Query 044538
Match_columns 158
No_of_seqs 243 out of 1665
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 06:55:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 6.4E-34 2.2E-38 218.6 13.5 144 12-158 5-207 (275)
2 3tui_C Methionine import ATP-b 100.0 6.8E-34 2.3E-38 225.4 11.2 144 12-157 22-226 (366)
3 3tif_A Uncharacterized ABC tra 100.0 2.9E-33 1E-37 210.5 11.2 141 15-156 2-207 (235)
4 2pcj_A ABC transporter, lipopr 100.0 4.9E-33 1.7E-37 207.9 11.1 140 13-156 3-201 (224)
5 3rlf_A Maltose/maltodextrin im 100.0 6.7E-33 2.3E-37 220.8 11.1 139 15-157 4-196 (381)
6 3fvq_A Fe(3+) IONS import ATP- 100.0 5.3E-33 1.8E-37 220.0 10.3 140 14-157 4-201 (359)
7 1z47_A CYSA, putative ABC-tran 100.0 1.3E-32 4.5E-37 217.6 12.1 142 12-157 12-208 (355)
8 1g6h_A High-affinity branched- 100.0 1.2E-32 4.1E-37 209.7 11.4 142 13-158 6-216 (257)
9 4g1u_C Hemin import ATP-bindin 100.0 1.3E-32 4.4E-37 210.4 10.9 141 13-157 10-210 (266)
10 2olj_A Amino acid ABC transpor 100.0 1E-32 3.5E-37 210.7 10.0 140 14-157 24-221 (263)
11 2it1_A 362AA long hypothetical 100.0 4.2E-32 1.4E-36 215.3 12.6 140 14-157 3-196 (362)
12 2nq2_C Hypothetical ABC transp 100.0 2.9E-32 1E-36 207.1 10.9 141 14-157 4-191 (253)
13 1b0u_A Histidine permease; ABC 100.0 1.5E-32 5.3E-37 209.6 9.4 141 13-157 5-215 (262)
14 2yyz_A Sugar ABC transporter, 100.0 3.5E-32 1.2E-36 215.6 11.3 140 14-157 3-196 (359)
15 1ji0_A ABC transporter; ATP bi 100.0 2.8E-32 9.6E-37 205.7 10.3 141 12-156 4-200 (240)
16 1sgw_A Putative ABC transporte 100.0 6.8E-32 2.3E-36 200.5 11.9 139 14-158 10-196 (214)
17 2ihy_A ABC transporter, ATP-bi 100.0 3.1E-32 1.1E-36 209.6 10.4 141 13-157 20-225 (279)
18 2yz2_A Putative ABC transporte 100.0 8.3E-32 2.8E-36 205.9 12.3 143 14-158 2-201 (266)
19 2zu0_C Probable ATP-dependent 100.0 1.5E-31 5.2E-36 204.6 13.4 144 11-157 17-226 (267)
20 3d31_A Sulfate/molybdate ABC t 100.0 5.3E-32 1.8E-36 213.8 11.0 138 15-157 2-190 (348)
21 1vpl_A ABC transporter, ATP-bi 100.0 5E-32 1.7E-36 206.2 10.1 140 13-156 14-207 (256)
22 1g29_1 MALK, maltose transport 100.0 3.9E-32 1.3E-36 216.3 9.8 140 14-157 3-202 (372)
23 1v43_A Sugar-binding transport 100.0 6.5E-32 2.2E-36 214.9 10.3 140 14-157 11-204 (372)
24 2onk_A Molybdate/tungstate ABC 100.0 1.3E-31 4.5E-36 202.1 11.1 135 15-156 2-188 (240)
25 1oxx_K GLCV, glucose, ABC tran 100.0 2.8E-32 9.4E-37 215.9 6.8 140 14-157 3-203 (353)
26 2d2e_A SUFC protein; ABC-ATPas 100.0 3E-31 1E-35 201.2 11.7 140 14-157 3-205 (250)
27 2ff7_A Alpha-hemolysin translo 100.0 6E-31 2E-35 199.3 11.2 141 16-157 9-206 (247)
28 2pjz_A Hypothetical protein ST 100.0 4.9E-31 1.7E-35 201.4 10.5 139 15-157 2-187 (263)
29 2cbz_A Multidrug resistance-as 100.0 1.3E-30 4.6E-35 196.2 12.0 143 14-157 3-191 (237)
30 3gd7_A Fusion complex of cysti 100.0 2.2E-30 7.5E-35 207.2 11.8 143 13-157 18-216 (390)
31 2ixe_A Antigen peptide transpo 100.0 1.8E-30 6.3E-35 199.0 10.8 142 13-156 15-218 (271)
32 2ghi_A Transport protein; mult 100.0 3.7E-30 1.2E-34 196.3 12.0 143 14-157 17-216 (260)
33 1mv5_A LMRA, multidrug resista 100.0 6.4E-31 2.2E-35 198.6 7.4 140 15-156 2-199 (243)
34 2qi9_C Vitamin B12 import ATP- 100.0 2.4E-30 8.2E-35 196.2 10.3 126 31-157 14-195 (249)
35 2pze_A Cystic fibrosis transme 100.0 2.4E-30 8E-35 194.0 10.1 142 14-156 6-191 (229)
36 3nh6_A ATP-binding cassette SU 100.0 5.7E-30 1.9E-34 199.1 8.1 140 14-156 53-250 (306)
37 3b5x_A Lipid A export ATP-bind 100.0 2.9E-28 9.9E-33 203.9 10.3 142 14-156 341-540 (582)
38 2iw3_A Elongation factor 3A; a 99.9 1.4E-28 4.8E-33 214.0 8.2 70 88-157 878-960 (986)
39 4a82_A Cystic fibrosis transme 99.9 7.4E-28 2.5E-32 201.3 11.5 143 14-157 339-538 (578)
40 3b60_A Lipid A export ATP-bind 99.9 8E-28 2.7E-32 201.2 11.5 143 14-157 341-541 (582)
41 3bk7_A ABC transporter ATP-bin 99.9 9.3E-28 3.2E-32 201.4 10.9 140 13-157 356-534 (607)
42 1yqt_A RNAse L inhibitor; ATP- 99.9 6.5E-28 2.2E-32 200.1 9.3 139 16-157 22-220 (538)
43 1yqt_A RNAse L inhibitor; ATP- 99.9 6.3E-28 2.2E-32 200.2 9.0 140 13-157 286-464 (538)
44 2bbs_A Cystic fibrosis transme 99.9 7.5E-28 2.6E-32 186.0 8.2 139 13-156 39-220 (290)
45 2yl4_A ATP-binding cassette SU 99.9 1.8E-27 6.1E-32 199.5 10.4 141 15-156 342-543 (595)
46 2iw3_A Elongation factor 3A; a 99.9 1E-27 3.5E-32 208.6 9.0 139 16-157 437-607 (986)
47 3ozx_A RNAse L inhibitor; ATP 99.9 9.7E-28 3.3E-32 199.0 7.8 140 13-157 268-448 (538)
48 3bk7_A ABC transporter ATP-bin 99.9 1.2E-27 4.2E-32 200.7 8.3 134 21-157 97-290 (607)
49 3qf4_A ABC transporter, ATP-bi 99.9 7.3E-27 2.5E-31 195.6 12.9 141 14-156 341-539 (587)
50 3qf4_B Uncharacterized ABC tra 99.9 7.1E-27 2.4E-31 196.0 11.1 142 14-157 354-552 (598)
51 3j16_B RLI1P; ribosome recycli 99.9 2.5E-27 8.4E-32 198.8 6.4 134 22-157 353-530 (608)
52 3j16_B RLI1P; ribosome recycli 99.9 1.2E-25 4E-30 188.6 11.4 134 21-157 83-283 (608)
53 3ux8_A Excinuclease ABC, A sub 99.9 7.2E-26 2.5E-30 192.0 9.3 69 89-157 522-608 (670)
54 3ux8_A Excinuclease ABC, A sub 99.9 3.8E-26 1.3E-30 193.7 6.4 64 93-156 185-265 (670)
55 4f4c_A Multidrug resistance pr 99.9 2.2E-25 7.5E-30 200.3 11.3 143 14-157 1076-1278(1321)
56 3g5u_A MCG1178, multidrug resi 99.9 1E-24 3.5E-29 195.5 10.9 142 15-157 1031-1232(1284)
57 4f4c_A Multidrug resistance pr 99.9 1.4E-24 4.6E-29 195.2 11.5 142 15-157 416-615 (1321)
58 3g5u_A MCG1178, multidrug resi 99.9 1.2E-24 4.2E-29 195.0 9.9 140 15-156 388-586 (1284)
59 3ozx_A RNAse L inhibitor; ATP 99.9 1.1E-24 3.9E-29 180.6 8.4 132 22-157 6-199 (538)
60 4gp7_A Metallophosphoesterase; 99.9 6.7E-23 2.3E-27 146.8 7.1 121 35-157 1-161 (171)
61 3pih_A Uvrabc system protein A 99.9 1.4E-22 4.9E-27 175.9 10.0 70 88-157 783-870 (916)
62 2r6f_A Excinuclease ABC subuni 99.8 1.4E-21 4.8E-26 169.5 7.3 68 90-157 825-910 (972)
63 2vf7_A UVRA2, excinuclease ABC 99.8 1.9E-21 6.3E-26 167.7 7.7 69 89-157 709-795 (842)
64 2npi_A Protein CLP1; CLP1-PCF1 99.8 9.5E-24 3.2E-28 172.1 -6.9 132 12-156 116-299 (460)
65 2ygr_A Uvrabc system protein A 99.8 2.6E-21 8.8E-26 168.3 7.4 68 90-157 843-928 (993)
66 4aby_A DNA repair protein RECN 99.8 3.2E-20 1.1E-24 148.9 6.9 46 111-156 296-357 (415)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 1.4E-18 4.8E-23 138.0 8.9 51 106-156 275-346 (365)
68 1ye8_A Protein THEP1, hypothet 99.7 7.1E-19 2.4E-23 126.8 3.5 108 45-153 2-138 (178)
69 3b85_A Phosphate starvation-in 99.7 1.1E-19 3.9E-24 134.0 -1.1 119 31-158 14-161 (208)
70 2obl_A ESCN; ATPase, hydrolase 99.7 1.9E-18 6.4E-23 136.4 1.8 139 14-156 45-229 (347)
71 1e69_A Chromosome segregation 99.7 1.8E-16 6.2E-21 123.7 12.6 51 106-156 215-283 (322)
72 1z6g_A Guanylate kinase; struc 99.7 5.1E-19 1.7E-23 131.2 -2.1 36 32-67 12-47 (218)
73 2v9p_A Replication protein E1; 99.7 3E-19 1E-23 138.6 -5.3 113 14-138 101-233 (305)
74 2dpy_A FLII, flagellum-specifi 99.7 8E-18 2.8E-22 136.5 2.4 140 13-156 130-318 (438)
75 3thx_B DNA mismatch repair pro 99.7 6.6E-18 2.3E-22 146.9 -0.2 122 30-157 660-798 (918)
76 1tq4_A IIGP1, interferon-induc 99.6 1.6E-17 5.6E-22 133.6 -1.1 123 31-156 37-236 (413)
77 3qkt_A DNA double-strand break 99.6 2.9E-15 9.8E-20 117.7 11.5 51 106-156 244-315 (339)
78 1tf7_A KAIC; homohexamer, hexa 99.6 1.8E-18 6.1E-23 143.1 -7.4 125 31-157 26-187 (525)
79 1tf7_A KAIC; homohexamer, hexa 99.6 2.7E-15 9.1E-20 124.1 8.8 115 37-155 275-417 (525)
80 1znw_A Guanylate kinase, GMP k 99.6 4.7E-17 1.6E-21 119.4 -2.0 36 30-67 9-44 (207)
81 2o8b_B DNA mismatch repair pro 99.6 1.1E-16 3.8E-21 140.8 -0.9 137 12-157 748-914 (1022)
82 2jeo_A Uridine-cytidine kinase 99.6 3.6E-17 1.2E-21 122.9 -3.6 119 29-154 11-164 (245)
83 3thx_A DNA mismatch repair pro 99.6 3.6E-16 1.2E-20 136.3 0.8 119 30-157 649-787 (934)
84 3b9q_A Chloroplast SRP recepto 99.5 7.4E-16 2.5E-20 119.5 1.0 34 33-66 90-123 (302)
85 2pt7_A CAG-ALFA; ATPase, prote 99.5 1.1E-15 3.8E-20 119.8 0.9 108 32-156 160-276 (330)
86 1ewq_A DNA mismatch repair pro 99.5 7.1E-15 2.4E-19 126.1 5.3 106 30-156 566-699 (765)
87 2og2_A Putative signal recogni 99.5 6.7E-15 2.3E-19 116.5 2.2 33 34-66 148-180 (359)
88 3aez_A Pantothenate kinase; tr 99.5 9.6E-16 3.3E-20 119.4 -3.8 86 40-127 87-193 (312)
89 3sop_A Neuronal-specific septi 99.4 1.1E-15 3.6E-20 116.9 -5.0 105 45-156 4-151 (270)
90 1wb9_A DNA mismatch repair pro 99.4 2E-14 6.8E-19 123.9 2.3 112 30-157 595-732 (800)
91 2o5v_A DNA replication and rep 99.4 4.2E-13 1.4E-17 106.2 8.7 48 107-154 261-330 (359)
92 1nlf_A Regulatory protein REPA 99.4 3E-12 1E-16 97.6 12.5 117 39-157 26-183 (279)
93 1cr0_A DNA primase/helicase; R 99.4 6.7E-13 2.3E-17 101.9 8.6 37 31-67 23-59 (296)
94 1zp6_A Hypothetical protein AT 99.4 2.4E-13 8.1E-18 97.7 4.3 115 39-153 5-158 (191)
95 3asz_A Uridine kinase; cytidin 99.4 2.1E-15 7.2E-20 110.3 -7.1 112 40-154 3-160 (211)
96 1rj9_A FTSY, signal recognitio 99.4 3.6E-12 1.2E-16 98.8 9.8 114 42-156 101-259 (304)
97 2ehv_A Hypothetical protein PH 99.4 5.6E-12 1.9E-16 93.8 10.4 26 39-64 26-51 (251)
98 2eyu_A Twitching motility prot 99.3 5.1E-13 1.7E-17 101.5 4.6 107 31-156 15-134 (261)
99 4a74_A DNA repair and recombin 99.3 5.4E-12 1.8E-16 92.7 7.8 28 39-66 21-48 (231)
100 1htw_A HI0065; nucleotide-bind 99.3 2.7E-13 9.4E-18 95.7 0.5 44 22-67 14-57 (158)
101 1pui_A ENGB, probable GTP-bind 99.3 6.2E-13 2.1E-17 96.6 2.1 47 14-66 3-49 (210)
102 1s96_A Guanylate kinase, GMP k 99.3 1.9E-12 6.6E-17 95.9 3.6 119 35-156 8-141 (219)
103 2rcn_A Probable GTPase ENGC; Y 99.3 2.5E-12 8.6E-17 101.6 4.2 91 32-125 205-328 (358)
104 2qnr_A Septin-2, protein NEDD5 99.2 3.4E-14 1.2E-18 110.0 -8.2 37 22-66 5-41 (301)
105 2w0m_A SSO2452; RECA, SSPF, un 99.2 1.1E-10 3.8E-15 85.5 10.3 120 31-155 10-168 (235)
106 1udx_A The GTP-binding protein 99.2 1.5E-12 5.3E-17 104.8 -0.4 34 33-66 147-180 (416)
107 2i3b_A HCR-ntpase, human cance 99.2 5.8E-13 2E-17 96.7 -3.0 25 43-67 1-25 (189)
108 3pih_A Uvrabc system protein A 99.1 3.3E-11 1.1E-15 105.0 4.9 66 92-157 446-528 (916)
109 3lnc_A Guanylate kinase, GMP k 99.1 2.1E-11 7.2E-16 90.4 2.9 37 31-67 15-52 (231)
110 3jvv_A Twitching mobility prot 99.1 1.6E-10 5.5E-15 91.3 7.7 47 22-68 95-148 (356)
111 1f2t_B RAD50 ABC-ATPase; DNA d 99.1 1.1E-10 3.7E-15 81.5 5.5 51 106-156 53-124 (148)
112 2r6f_A Excinuclease ABC subuni 99.0 1.2E-10 4E-15 101.6 5.0 65 93-157 487-568 (972)
113 3tr0_A Guanylate kinase, GMP k 99.0 7.7E-11 2.6E-15 85.2 3.4 30 37-66 1-30 (205)
114 2qag_B Septin-6, protein NEDD5 99.0 3.2E-11 1.1E-15 97.3 1.1 42 22-66 22-65 (427)
115 3euj_A Chromosome partition pr 99.0 1.3E-10 4.5E-15 95.0 4.6 34 31-65 18-51 (483)
116 2ygr_A Uvrabc system protein A 99.0 1.9E-10 6.4E-15 100.6 5.3 65 93-157 504-585 (993)
117 2cvh_A DNA repair and recombin 99.0 7.3E-10 2.5E-14 80.7 7.2 34 32-65 8-42 (220)
118 2vf7_A UVRA2, excinuclease ABC 99.0 2.8E-10 9.6E-15 98.5 5.2 64 93-156 362-442 (842)
119 1pzn_A RAD51, DNA repair and r 99.0 2.6E-10 8.8E-15 89.9 3.4 36 32-67 119-155 (349)
120 3nwj_A ATSK2; P loop, shikimat 99.0 4.5E-11 1.5E-15 90.2 -1.1 52 13-65 16-70 (250)
121 1in4_A RUVB, holliday junction 98.9 2.3E-11 8E-16 95.1 -3.8 44 22-67 25-75 (334)
122 2gza_A Type IV secretion syste 98.9 3.9E-11 1.3E-15 94.9 -3.6 35 33-67 165-199 (361)
123 3vaa_A Shikimate kinase, SK; s 98.9 7.7E-10 2.6E-14 80.2 3.2 37 30-66 12-48 (199)
124 3szr_A Interferon-induced GTP- 98.9 3E-10 1E-14 95.5 0.5 49 15-67 11-69 (608)
125 1sq5_A Pantothenate kinase; P- 98.9 6.6E-11 2.3E-15 91.7 -3.4 49 14-67 37-104 (308)
126 3kta_B Chromosome segregation 98.8 6.9E-09 2.4E-13 74.1 7.1 50 106-155 60-127 (173)
127 3lda_A DNA repair protein RAD5 98.8 3.5E-08 1.2E-12 79.1 11.2 26 39-64 174-199 (400)
128 3kta_A Chromosome segregation 98.8 1.7E-09 6E-14 76.9 3.2 31 34-65 18-48 (182)
129 2yhs_A FTSY, cell division pro 98.8 1.2E-09 3.9E-14 89.6 2.5 35 33-67 283-317 (503)
130 2qm8_A GTPase/ATPase; G protei 98.8 6.6E-10 2.3E-14 87.2 0.7 49 15-66 30-78 (337)
131 1vma_A Cell division protein F 98.8 3.9E-09 1.3E-13 81.8 4.9 86 35-127 96-185 (306)
132 1lvg_A Guanylate kinase, GMP k 98.8 1.8E-09 6.3E-14 78.3 2.6 27 41-67 2-28 (198)
133 3c8u_A Fructokinase; YP_612366 98.8 3E-09 1E-13 77.6 3.2 29 40-68 19-47 (208)
134 2j41_A Guanylate kinase; GMP, 98.7 4.1E-09 1.4E-13 76.1 3.2 30 38-67 1-30 (207)
135 3a00_A Guanylate kinase, GMP k 98.7 5.5E-09 1.9E-13 74.9 2.7 25 43-67 1-25 (186)
136 1lw7_A Transcriptional regulat 98.7 2.4E-09 8.4E-14 84.5 0.6 36 33-68 158-195 (365)
137 2qag_C Septin-7; cell cycle, c 98.7 5.9E-09 2E-13 84.0 2.8 46 13-67 10-55 (418)
138 1kgd_A CASK, peripheral plasma 98.6 1.2E-08 4.3E-13 72.7 3.2 27 41-67 3-29 (180)
139 3uie_A Adenylyl-sulfate kinase 98.6 3.8E-09 1.3E-13 76.5 0.3 37 31-67 13-49 (200)
140 4ad8_A DNA repair protein RECN 98.6 1.2E-08 4.3E-13 84.0 2.7 50 107-156 393-459 (517)
141 4eun_A Thermoresistant glucoki 98.6 1.9E-08 6.6E-13 72.7 3.2 31 36-66 22-52 (200)
142 1svm_A Large T antigen; AAA+ f 98.6 8.1E-09 2.8E-13 82.1 0.8 36 31-66 157-192 (377)
143 1jjv_A Dephospho-COA kinase; P 98.6 1.3E-07 4.4E-12 68.4 7.0 100 45-156 4-116 (206)
144 2oap_1 GSPE-2, type II secreti 98.6 4.6E-09 1.6E-13 86.6 -0.9 36 31-66 248-283 (511)
145 3ec2_A DNA replication protein 98.6 1.5E-08 5.3E-13 71.9 1.8 31 37-67 32-62 (180)
146 2x8a_A Nuclear valosin-contain 98.6 1.1E-08 3.7E-13 78.0 0.7 36 31-68 34-69 (274)
147 3tau_A Guanylate kinase, GMP k 98.5 4.1E-08 1.4E-12 71.6 3.2 27 41-67 6-32 (208)
148 2bdt_A BH3686; alpha-beta prot 98.5 2.6E-08 9E-13 71.1 2.1 23 43-65 2-24 (189)
149 2ewv_A Twitching motility prot 98.5 1.9E-08 6.4E-13 79.9 1.4 35 32-68 127-161 (372)
150 1f2t_A RAD50 ABC-ATPase; DNA d 98.5 4.9E-08 1.7E-12 67.9 3.2 31 34-65 15-45 (149)
151 3e70_C DPA, signal recognition 98.5 5.4E-08 1.8E-12 76.1 2.9 29 39-67 125-153 (328)
152 3hr8_A Protein RECA; alpha and 98.5 4.8E-08 1.6E-12 77.1 2.1 28 39-66 57-84 (356)
153 3ney_A 55 kDa erythrocyte memb 98.4 9E-08 3.1E-12 69.7 3.1 31 37-67 13-43 (197)
154 2bbw_A Adenylate kinase 4, AK4 98.4 8.7E-08 3E-12 71.4 3.2 23 42-64 26-48 (246)
155 2vp4_A Deoxynucleoside kinase; 98.4 3.2E-08 1.1E-12 73.2 0.6 31 36-66 13-43 (230)
156 2kjq_A DNAA-related protein; s 98.4 1.1E-07 3.7E-12 66.1 3.2 27 42-68 35-61 (149)
157 1ixz_A ATP-dependent metallopr 98.4 3.2E-08 1.1E-12 73.9 0.6 42 22-67 32-73 (254)
158 1p9r_A General secretion pathw 98.4 3.7E-08 1.3E-12 79.4 0.6 33 32-66 158-190 (418)
159 4e22_A Cytidylate kinase; P-lo 98.4 1.1E-07 3.6E-12 71.5 3.0 24 41-64 25-48 (252)
160 1u0l_A Probable GTPase ENGC; p 98.4 4.6E-08 1.6E-12 75.4 1.0 29 38-66 164-192 (301)
161 1knq_A Gluconate kinase; ALFA/ 98.4 1E-07 3.4E-12 67.2 2.6 26 41-66 6-31 (175)
162 1qhl_A Protein (cell division 98.4 5.6E-09 1.9E-13 77.6 -4.2 29 37-66 22-50 (227)
163 1iy2_A ATP-dependent metallopr 98.4 4.2E-08 1.4E-12 74.4 0.5 35 31-67 63-97 (278)
164 1n0w_A DNA repair protein RAD5 98.4 1.7E-07 5.7E-12 69.1 3.6 28 39-66 20-47 (243)
165 1w1w_A Structural maintenance 98.4 1.6E-07 5.6E-12 75.5 3.7 48 108-155 331-397 (430)
166 2yv5_A YJEQ protein; hydrolase 98.4 7.4E-08 2.5E-12 74.3 1.6 27 38-64 160-186 (302)
167 1kag_A SKI, shikimate kinase I 98.4 1.3E-07 4.4E-12 66.4 2.7 25 42-66 3-27 (173)
168 1ls1_A Signal recognition part 98.4 2.6E-06 8.9E-11 65.4 10.1 40 22-67 83-122 (295)
169 1sxj_E Activator 1 40 kDa subu 98.4 1E-06 3.6E-11 68.4 7.6 30 128-157 145-176 (354)
170 1t9h_A YLOQ, probable GTPase E 98.4 2.4E-08 8.4E-13 77.3 -1.7 28 38-65 168-195 (307)
171 1w1w_A Structural maintenance 98.3 8.4E-07 2.9E-11 71.4 7.0 28 38-65 21-48 (430)
172 3tqc_A Pantothenate kinase; bi 98.3 7.1E-08 2.4E-12 75.2 -0.1 46 20-67 65-116 (321)
173 3qks_A DNA double-strand break 98.3 3.2E-07 1.1E-11 66.8 3.2 30 34-64 15-44 (203)
174 1rz3_A Hypothetical protein rb 98.3 2.5E-07 8.7E-12 66.9 2.4 29 39-67 18-46 (201)
175 1zu4_A FTSY; GTPase, signal re 98.3 2.1E-07 7.3E-12 72.4 2.1 33 34-66 96-128 (320)
176 2qt1_A Nicotinamide riboside k 98.3 2.4E-07 8.3E-12 67.0 2.2 32 35-66 13-44 (207)
177 3auy_A DNA double-strand break 98.3 2.5E-06 8.4E-11 67.4 7.9 51 106-156 276-347 (371)
178 4a1f_A DNAB helicase, replicat 98.3 3.2E-06 1.1E-10 66.2 8.3 116 32-153 35-164 (338)
179 1y63_A LMAJ004144AAA protein; 98.3 4.1E-07 1.4E-11 64.9 2.9 32 35-66 2-33 (184)
180 3ice_A Transcription terminati 98.2 3.6E-07 1.2E-11 72.8 2.6 49 15-65 134-196 (422)
181 4eaq_A DTMP kinase, thymidylat 98.2 4.7E-07 1.6E-11 67.1 2.8 35 33-67 13-50 (229)
182 4ad8_A DNA repair protein RECN 98.2 2.2E-07 7.6E-12 76.5 0.1 33 32-65 50-82 (517)
183 2qor_A Guanylate kinase; phosp 98.2 8.1E-07 2.8E-11 64.3 2.7 29 38-66 7-35 (204)
184 1cke_A CK, MSSA, protein (cyti 98.2 9.5E-07 3.3E-11 64.5 3.1 23 43-65 5-27 (227)
185 2pez_A Bifunctional 3'-phospho 98.1 1.1E-06 3.6E-11 62.2 2.8 26 41-66 3-28 (179)
186 3cr8_A Sulfate adenylyltranfer 98.1 5.4E-07 1.9E-11 74.9 1.0 30 39-68 365-394 (552)
187 1nij_A Hypothetical protein YJ 98.1 1E-06 3.6E-11 68.3 2.5 46 110-155 141-189 (318)
188 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 1.1E-06 3.8E-11 70.1 2.6 27 39-65 16-42 (392)
189 2f1r_A Molybdopterin-guanine d 98.1 5.4E-07 1.8E-11 64.1 0.6 23 44-66 3-25 (171)
190 2r6a_A DNAB helicase, replicat 98.1 1.4E-05 5E-10 64.7 9.0 35 32-66 192-226 (454)
191 2p67_A LAO/AO transport system 98.1 4.8E-07 1.7E-11 70.8 0.2 36 31-66 44-79 (341)
192 1fnn_A CDC6P, cell division co 98.1 5.4E-05 1.8E-09 59.1 11.9 107 42-155 41-169 (389)
193 1oix_A RAS-related protein RAB 98.1 1.7E-06 5.8E-11 61.8 2.6 22 45-66 31-52 (191)
194 2dr3_A UPF0273 protein PH0284; 98.0 2.4E-06 8.2E-11 62.8 3.2 33 32-64 11-44 (247)
195 2if2_A Dephospho-COA kinase; a 98.0 1.8E-06 6.3E-11 62.1 2.5 21 45-65 3-23 (204)
196 2f9l_A RAB11B, member RAS onco 98.0 2.4E-06 8.1E-11 61.2 2.9 22 45-66 7-28 (199)
197 3bh0_A DNAB-like replicative h 98.0 9.7E-06 3.3E-10 62.7 6.4 116 32-153 57-189 (315)
198 2px0_A Flagellar biosynthesis 98.0 2.7E-06 9.2E-11 65.4 2.8 28 41-68 103-130 (296)
199 3auy_A DNA double-strand break 98.0 3.7E-06 1.3E-10 66.4 3.6 31 33-64 16-46 (371)
200 1odf_A YGR205W, hypothetical 3 98.0 3.3E-06 1.1E-10 64.8 2.8 27 41-67 29-55 (290)
201 3cm0_A Adenylate kinase; ATP-b 97.9 3.4E-06 1.2E-10 59.6 2.3 25 41-65 2-26 (186)
202 2yvu_A Probable adenylyl-sulfa 97.9 4E-06 1.4E-10 59.5 2.4 29 38-66 8-36 (186)
203 3t61_A Gluconokinase; PSI-biol 97.9 4.7E-06 1.6E-10 59.9 2.7 24 43-66 18-41 (202)
204 3m6a_A ATP-dependent protease 97.9 2.2E-06 7.4E-11 71.1 1.0 34 32-66 98-131 (543)
205 2ga8_A Hypothetical 39.9 kDa p 97.9 1.4E-06 4.8E-11 68.7 -0.2 35 32-66 11-47 (359)
206 3k1j_A LON protease, ATP-depen 97.9 1.3E-06 4.6E-11 73.2 -0.5 37 31-67 48-84 (604)
207 1m7g_A Adenylylsulfate kinase; 97.9 5.3E-06 1.8E-10 60.2 2.5 30 38-67 20-49 (211)
208 2dhr_A FTSH; AAA+ protein, hex 97.9 3E-06 1E-10 69.7 1.1 35 31-67 54-88 (499)
209 1q3t_A Cytidylate kinase; nucl 97.9 7.3E-06 2.5E-10 60.5 3.1 26 40-65 13-38 (236)
210 2gj8_A MNME, tRNA modification 97.9 5.6E-06 1.9E-10 58.0 2.3 25 42-66 3-27 (172)
211 2e87_A Hypothetical protein PH 97.8 3.7E-06 1.3E-10 66.0 1.3 107 42-156 166-293 (357)
212 1m2o_B GTP-binding protein SAR 97.8 7.1E-06 2.4E-10 58.4 2.6 33 32-65 13-45 (190)
213 2www_A Methylmalonic aciduria 97.8 7.7E-06 2.6E-10 64.2 3.0 26 41-66 72-97 (349)
214 1ega_A Protein (GTP-binding pr 97.8 4.7E-06 1.6E-10 64.1 1.6 25 42-66 7-31 (301)
215 3kb2_A SPBC2 prophage-derived 97.8 8.8E-06 3E-10 56.5 2.8 22 45-66 3-24 (173)
216 3t34_A Dynamin-related protein 97.8 6.6E-06 2.2E-10 64.6 2.2 33 31-66 25-57 (360)
217 1qhx_A CPT, protein (chloramph 97.8 1.1E-05 3.8E-10 56.6 3.2 25 42-66 2-26 (178)
218 1f6b_A SAR1; gtpases, N-termin 97.8 1.9E-06 6.4E-11 61.9 -1.1 42 22-65 6-47 (198)
219 1sxj_C Activator 1 40 kDa subu 97.8 2.4E-06 8.3E-11 66.4 -0.6 35 31-65 32-68 (340)
220 1lv7_A FTSH; alpha/beta domain 97.8 8.2E-06 2.8E-10 60.8 2.2 34 32-67 36-69 (257)
221 1j8m_F SRP54, signal recogniti 97.8 8.1E-06 2.8E-10 62.8 2.2 40 22-66 81-121 (297)
222 1kht_A Adenylate kinase; phosp 97.8 1.3E-05 4.6E-10 56.5 3.1 24 42-65 2-25 (192)
223 2wji_A Ferrous iron transport 97.7 1.5E-05 5E-10 55.3 2.7 22 45-66 5-26 (165)
224 2rhm_A Putative kinase; P-loop 97.7 1.2E-05 4.3E-10 56.9 2.4 25 41-65 3-27 (193)
225 1vht_A Dephospho-COA kinase; s 97.7 1.7E-05 5.7E-10 57.7 2.9 24 42-65 3-26 (218)
226 3lw7_A Adenylate kinase relate 97.7 1.6E-05 5.6E-10 55.0 2.7 19 45-63 3-21 (179)
227 3r20_A Cytidylate kinase; stru 97.7 1.7E-05 5.7E-10 59.1 2.8 24 43-66 9-32 (233)
228 2p5t_B PEZT; postsegregational 97.7 1.2E-05 4E-10 60.2 1.9 28 39-66 28-55 (253)
229 3iij_A Coilin-interacting nucl 97.7 1.2E-05 3.9E-10 56.8 1.8 25 41-65 9-33 (180)
230 2ffh_A Protein (FFH); SRP54, s 97.7 1.4E-05 5E-10 64.3 2.4 39 22-66 83-121 (425)
231 2v54_A DTMP kinase, thymidylat 97.7 2.1E-05 7.3E-10 56.2 3.1 26 41-66 2-27 (204)
232 1np6_A Molybdopterin-guanine d 97.7 2.2E-05 7.4E-10 55.8 3.0 23 44-66 7-29 (174)
233 1ex7_A Guanylate kinase; subst 97.7 2.7E-05 9.3E-10 56.0 3.3 22 45-66 3-24 (186)
234 3trf_A Shikimate kinase, SK; a 97.7 2.4E-05 8.1E-10 55.2 3.0 24 42-65 4-27 (185)
235 2ze6_A Isopentenyl transferase 97.6 2.1E-05 7.1E-10 59.0 2.5 21 45-65 3-23 (253)
236 1gvn_B Zeta; postsegregational 97.6 2.5E-05 8.7E-10 59.6 3.0 26 41-66 31-56 (287)
237 1via_A Shikimate kinase; struc 97.6 2.1E-05 7.2E-10 55.2 2.4 21 45-65 6-26 (175)
238 2xau_A PRE-mRNA-splicing facto 97.6 6.9E-05 2.4E-09 64.6 6.0 27 39-65 105-131 (773)
239 2jaq_A Deoxyguanosine kinase; 97.6 2.5E-05 8.7E-10 55.6 2.8 22 45-66 2-23 (205)
240 2wjg_A FEOB, ferrous iron tran 97.6 2.6E-05 8.8E-10 54.8 2.7 22 45-66 9-30 (188)
241 2vli_A Antibiotic resistance p 97.6 2.9E-05 1E-09 54.5 3.0 26 41-66 3-28 (183)
242 2zr9_A Protein RECA, recombina 97.6 3E-05 1E-09 60.9 3.2 28 39-66 57-84 (349)
243 2wwf_A Thymidilate kinase, put 97.6 2.9E-05 1E-09 55.8 2.9 25 41-65 8-32 (212)
244 2c95_A Adenylate kinase 1; tra 97.6 2.8E-05 9.7E-10 55.1 2.7 25 41-65 7-31 (196)
245 2zej_A Dardarin, leucine-rich 97.6 2.7E-05 9.1E-10 54.9 2.5 21 45-65 4-24 (184)
246 1uf9_A TT1252 protein; P-loop, 97.6 2.8E-05 9.7E-10 55.4 2.6 23 44-66 9-31 (203)
247 1ly1_A Polynucleotide kinase; 97.6 3.2E-05 1.1E-09 54.0 2.8 22 44-65 3-24 (181)
248 1nn5_A Similar to deoxythymidy 97.6 3.2E-05 1.1E-09 55.7 2.8 26 40-65 6-31 (215)
249 2plr_A DTMP kinase, probable t 97.6 3.3E-05 1.1E-09 55.4 2.8 25 42-66 3-27 (213)
250 1ypw_A Transitional endoplasmi 97.6 2.3E-05 7.8E-10 67.9 2.1 31 37-67 232-262 (806)
251 1tev_A UMP-CMP kinase; ploop, 97.5 3.7E-05 1.3E-09 54.3 2.7 23 43-65 3-25 (196)
252 3cf0_A Transitional endoplasmi 97.5 3E-05 1E-09 59.4 2.1 29 37-65 43-71 (301)
253 2bwj_A Adenylate kinase 5; pho 97.5 1.4E-05 4.7E-10 56.9 0.1 27 39-65 8-34 (199)
254 1nks_A Adenylate kinase; therm 97.5 4.7E-05 1.6E-09 53.7 2.5 22 45-66 3-24 (194)
255 2q6t_A DNAB replication FORK h 97.5 0.001 3.5E-08 53.6 10.7 116 32-153 189-318 (444)
256 1gtv_A TMK, thymidylate kinase 97.5 1.6E-05 5.6E-10 57.2 0.1 22 45-66 2-23 (214)
257 2dy1_A Elongation factor G; tr 97.5 3.5E-05 1.2E-09 65.4 1.9 30 37-66 3-32 (665)
258 2z0h_A DTMP kinase, thymidylat 97.5 5.6E-05 1.9E-09 53.6 2.7 22 45-66 2-23 (197)
259 1aky_A Adenylate kinase; ATP:A 97.5 6.8E-05 2.3E-09 54.5 3.2 24 42-65 3-26 (220)
260 3llm_A ATP-dependent RNA helic 97.5 4.1E-05 1.4E-09 56.4 2.0 27 39-65 72-98 (235)
261 3ake_A Cytidylate kinase; CMP 97.4 5.9E-05 2E-09 53.9 2.7 21 45-65 4-24 (208)
262 1a7j_A Phosphoribulokinase; tr 97.4 6.2E-05 2.1E-09 57.6 2.9 24 42-65 4-27 (290)
263 1zd8_A GTP:AMP phosphotransfer 97.4 7.2E-05 2.5E-09 54.7 2.8 25 41-65 5-29 (227)
264 2cdn_A Adenylate kinase; phosp 97.4 9E-05 3.1E-09 53.1 3.2 24 42-65 19-42 (201)
265 3lxx_A GTPase IMAP family memb 97.4 7.5E-05 2.6E-09 55.0 2.7 22 45-66 31-52 (239)
266 3fb4_A Adenylate kinase; psych 97.4 7.9E-05 2.7E-09 53.9 2.7 21 45-65 2-22 (216)
267 1zak_A Adenylate kinase; ATP:A 97.4 7E-05 2.4E-09 54.5 2.4 24 42-65 4-27 (222)
268 1xjc_A MOBB protein homolog; s 97.4 8.8E-05 3E-09 52.5 2.8 23 44-66 5-27 (169)
269 2ce7_A Cell division protein F 97.4 3.7E-05 1.3E-09 62.8 0.9 34 32-67 40-73 (476)
270 2iyv_A Shikimate kinase, SK; t 97.4 7.8E-05 2.7E-09 52.5 2.4 22 44-65 3-24 (184)
271 2ohf_A Protein OLA1, GTP-bindi 97.4 7.1E-05 2.4E-09 59.8 2.4 28 39-66 18-45 (396)
272 2qag_A Septin-2, protein NEDD5 97.4 4.8E-05 1.7E-09 59.9 1.4 42 15-65 18-59 (361)
273 2pbr_A DTMP kinase, thymidylat 97.4 9.2E-05 3.1E-09 52.2 2.8 22 45-66 2-23 (195)
274 3k53_A Ferrous iron transport 97.4 7.4E-05 2.5E-09 56.2 2.4 22 45-66 5-26 (271)
275 1e6c_A Shikimate kinase; phosp 97.3 8.5E-05 2.9E-09 51.6 2.5 22 44-65 3-24 (173)
276 1ukz_A Uridylate kinase; trans 97.3 8.9E-05 3.1E-09 53.0 2.6 24 42-65 14-37 (203)
277 1mky_A Probable GTP-binding pr 97.3 8.4E-05 2.9E-09 59.9 2.7 22 45-66 182-203 (439)
278 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 9.6E-05 3.3E-09 55.4 2.8 25 42-66 3-27 (260)
279 3dl0_A Adenylate kinase; phosp 97.3 9.7E-05 3.3E-09 53.4 2.7 21 45-65 2-22 (216)
280 1v5w_A DMC1, meiotic recombina 97.3 0.0001 3.5E-09 57.6 2.9 28 39-66 118-145 (343)
281 2pt5_A Shikimate kinase, SK; a 97.3 0.00011 3.8E-09 50.8 2.9 21 45-65 2-22 (168)
282 1zuh_A Shikimate kinase; alpha 97.3 0.00012 4E-09 50.9 2.9 22 44-65 8-29 (168)
283 1qf9_A UMP/CMP kinase, protein 97.3 9.8E-05 3.3E-09 52.0 2.4 23 43-65 6-28 (194)
284 2grj_A Dephospho-COA kinase; T 97.3 0.00011 3.8E-09 52.9 2.7 23 44-66 13-35 (192)
285 1uj2_A Uridine-cytidine kinase 97.3 0.00011 3.9E-09 54.6 2.7 22 44-65 23-44 (252)
286 3bos_A Putative DNA replicatio 97.3 0.00014 4.8E-09 52.7 3.2 24 42-65 51-74 (242)
287 2qtf_A Protein HFLX, GTP-bindi 97.3 0.0001 3.5E-09 58.2 2.5 21 45-65 181-201 (364)
288 3tlx_A Adenylate kinase 2; str 97.3 0.00012 4.3E-09 54.3 2.8 24 42-65 28-51 (243)
289 2ius_A DNA translocase FTSK; n 97.3 0.00013 4.4E-09 60.1 3.0 31 35-65 159-189 (512)
290 4ag6_A VIRB4 ATPase, type IV s 97.3 0.00017 5.8E-09 57.1 3.6 23 42-64 34-56 (392)
291 2z43_A DNA repair and recombin 97.2 0.00017 5.7E-09 55.9 3.2 28 39-66 103-130 (324)
292 3v9p_A DTMP kinase, thymidylat 97.2 0.00018 6.2E-09 53.2 3.1 26 41-66 23-48 (227)
293 2xb4_A Adenylate kinase; ATP-b 97.2 0.00017 5.7E-09 52.8 2.8 21 45-65 2-22 (223)
294 2f6r_A COA synthase, bifunctio 97.2 0.00014 4.9E-09 55.2 2.5 22 43-64 75-96 (281)
295 3b9p_A CG5977-PA, isoform A; A 97.2 0.00019 6.4E-09 54.4 3.2 25 42-66 53-77 (297)
296 2ged_A SR-beta, signal recogni 97.2 0.00017 5.9E-09 50.7 2.8 24 44-67 49-72 (193)
297 2qby_A CDC6 homolog 1, cell di 97.2 0.00014 4.7E-09 56.4 2.5 27 41-67 43-69 (386)
298 3kl4_A SRP54, signal recogniti 97.2 0.00014 4.7E-09 58.7 2.4 25 42-66 96-120 (433)
299 3be4_A Adenylate kinase; malar 97.2 0.00019 6.5E-09 52.1 2.6 24 42-65 4-27 (217)
300 3b1v_A Ferrous iron uptake tra 97.1 0.00019 6.3E-09 54.4 2.6 22 45-66 5-26 (272)
301 1z2a_A RAS-related protein RAB 97.1 0.00022 7.5E-09 48.7 2.7 21 45-65 7-27 (168)
302 2w58_A DNAI, primosome compone 97.1 0.00025 8.7E-09 50.6 3.0 24 44-67 55-78 (202)
303 2dyk_A GTP-binding protein; GT 97.1 0.00026 8.8E-09 48.1 2.8 22 45-66 3-24 (161)
304 1e4v_A Adenylate kinase; trans 97.1 0.00021 7.3E-09 51.7 2.4 21 45-65 2-22 (214)
305 1kao_A RAP2A; GTP-binding prot 97.1 0.00026 9E-09 48.1 2.8 21 45-65 5-25 (167)
306 3umf_A Adenylate kinase; rossm 97.1 0.00021 7.2E-09 52.5 2.4 29 37-65 23-51 (217)
307 4fcw_A Chaperone protein CLPB; 97.1 0.00023 8E-09 54.0 2.7 24 44-67 48-71 (311)
308 2ce2_X GTPase HRAS; signaling 97.1 0.00024 8.1E-09 48.2 2.4 21 45-65 5-25 (166)
309 1fzq_A ADP-ribosylation factor 97.1 0.00022 7.4E-09 50.1 2.3 22 45-66 18-39 (181)
310 1jbk_A CLPB protein; beta barr 97.1 0.00032 1.1E-08 48.7 3.2 25 42-66 42-66 (195)
311 2nzj_A GTP-binding protein REM 97.1 0.00028 9.7E-09 48.5 2.8 21 45-65 6-26 (175)
312 1z08_A RAS-related protein RAB 97.1 0.00029 1E-08 48.2 2.8 21 45-65 8-28 (170)
313 2lkc_A Translation initiation 97.1 0.00035 1.2E-08 48.2 3.3 24 42-65 7-30 (178)
314 1u8z_A RAS-related protein RAL 97.1 0.00028 9.7E-09 47.9 2.7 21 45-65 6-26 (168)
315 1ko7_A HPR kinase/phosphatase; 97.1 0.00037 1.3E-08 54.0 3.6 34 31-65 133-166 (314)
316 1ky3_A GTP-binding protein YPT 97.1 0.00029 1E-08 48.7 2.8 21 45-65 10-30 (182)
317 2erx_A GTP-binding protein DI- 97.1 0.0003 1E-08 48.1 2.8 21 45-65 5-25 (172)
318 1ltq_A Polynucleotide kinase; 97.1 0.00027 9.4E-09 53.6 2.8 22 44-65 3-24 (301)
319 1c1y_A RAS-related protein RAP 97.1 0.0003 1E-08 47.9 2.7 21 45-65 5-25 (167)
320 3h4m_A Proteasome-activating n 97.0 0.00032 1.1E-08 52.7 3.1 26 40-65 48-73 (285)
321 3q85_A GTP-binding protein REM 97.0 0.00031 1E-08 48.1 2.7 20 45-64 4-23 (169)
322 1ak2_A Adenylate kinase isoenz 97.0 0.00035 1.2E-08 51.3 3.2 24 42-65 15-38 (233)
323 3zvl_A Bifunctional polynucleo 97.0 0.00028 9.6E-09 56.5 2.9 28 38-65 253-280 (416)
324 1ek0_A Protein (GTP-binding pr 97.0 0.00028 9.6E-09 48.1 2.5 21 45-65 5-25 (170)
325 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00032 1.1E-08 48.4 2.8 21 45-65 9-29 (177)
326 4edh_A DTMP kinase, thymidylat 97.0 0.00031 1.1E-08 51.3 2.7 25 41-65 4-28 (213)
327 1z0j_A RAB-22, RAS-related pro 97.0 0.00033 1.1E-08 47.8 2.8 22 45-66 8-29 (170)
328 3q72_A GTP-binding protein RAD 97.0 0.00027 9.3E-09 48.2 2.3 21 45-65 4-24 (166)
329 2h92_A Cytidylate kinase; ross 97.0 0.00031 1.1E-08 50.8 2.6 23 43-65 3-25 (219)
330 3tw8_B RAS-related protein RAB 97.0 0.00034 1.2E-08 48.3 2.7 21 45-65 11-31 (181)
331 1g16_A RAS-related protein SEC 97.0 0.00031 1.1E-08 48.0 2.4 21 45-65 5-25 (170)
332 3lv8_A DTMP kinase, thymidylat 97.0 0.00036 1.2E-08 51.9 2.9 24 42-65 26-49 (236)
333 3d3q_A TRNA delta(2)-isopenten 97.0 0.00033 1.1E-08 54.9 2.7 22 44-65 8-29 (340)
334 1moz_A ARL1, ADP-ribosylation 97.0 0.00019 6.6E-09 49.9 1.3 21 44-64 19-39 (183)
335 2i1q_A DNA repair and recombin 97.0 0.00034 1.2E-08 53.9 2.8 27 39-65 94-120 (322)
336 1sky_E F1-ATPase, F1-ATP synth 97.0 0.00036 1.2E-08 56.8 3.0 34 32-66 141-174 (473)
337 1l8q_A Chromosomal replication 97.0 0.00031 1.1E-08 53.9 2.5 26 42-67 36-61 (324)
338 2fn4_A P23, RAS-related protei 97.0 0.00034 1.2E-08 48.3 2.5 21 45-65 11-31 (181)
339 2qmh_A HPR kinase/phosphorylas 97.0 0.00065 2.2E-08 49.4 4.0 32 32-64 24-55 (205)
340 1upt_A ARL1, ADP-ribosylation 97.0 0.00038 1.3E-08 47.6 2.7 21 45-65 9-29 (171)
341 3ihw_A Centg3; RAS, centaurin, 97.0 0.00039 1.3E-08 48.9 2.8 21 45-65 22-42 (184)
342 1svi_A GTP-binding protein YSX 97.0 0.0003 1E-08 49.4 2.2 23 44-66 24-46 (195)
343 3pqc_A Probable GTP-binding pr 97.0 0.00031 1.1E-08 49.2 2.2 22 45-66 25-46 (195)
344 1r2q_A RAS-related protein RAB 97.0 0.0004 1.4E-08 47.4 2.7 21 45-65 8-28 (170)
345 3bc1_A RAS-related protein RAB 97.0 0.00039 1.3E-08 48.5 2.7 21 45-65 13-33 (195)
346 3lxw_A GTPase IMAP family memb 97.0 0.00037 1.3E-08 51.8 2.7 22 45-66 23-44 (247)
347 4dsu_A GTPase KRAS, isoform 2B 97.0 0.00041 1.4E-08 48.3 2.8 21 45-65 6-26 (189)
348 2oil_A CATX-8, RAS-related pro 97.0 0.0004 1.4E-08 48.8 2.8 21 45-65 27-47 (193)
349 1r8s_A ADP-ribosylation factor 96.9 0.00043 1.5E-08 47.1 2.7 21 45-65 2-22 (164)
350 4tmk_A Protein (thymidylate ki 96.9 0.00044 1.5E-08 50.5 2.9 24 42-65 2-25 (213)
351 2hxs_A RAB-26, RAS-related pro 96.9 0.00044 1.5E-08 47.7 2.8 21 45-65 8-28 (178)
352 3exa_A TRNA delta(2)-isopenten 96.9 0.00042 1.4E-08 53.7 2.8 23 43-65 3-25 (322)
353 2cxx_A Probable GTP-binding pr 96.9 0.00035 1.2E-08 48.8 2.2 21 45-65 3-23 (190)
354 2a9k_A RAS-related protein RAL 96.9 0.00044 1.5E-08 48.0 2.7 21 45-65 20-40 (187)
355 1njg_A DNA polymerase III subu 96.9 0.00053 1.8E-08 49.2 3.2 22 45-66 47-68 (250)
356 2y8e_A RAB-protein 6, GH09086P 96.9 0.0004 1.4E-08 47.8 2.4 21 45-65 16-36 (179)
357 3con_A GTPase NRAS; structural 96.9 0.00046 1.6E-08 48.4 2.7 21 45-65 23-43 (190)
358 2zts_A Putative uncharacterize 96.9 0.0006 2.1E-08 49.8 3.5 25 40-64 27-51 (251)
359 3clv_A RAB5 protein, putative; 96.9 0.00047 1.6E-08 48.4 2.8 22 45-66 9-30 (208)
360 3t1o_A Gliding protein MGLA; G 96.9 0.00048 1.7E-08 48.2 2.9 22 45-66 16-37 (198)
361 3a8t_A Adenylate isopentenyltr 96.9 0.00043 1.5E-08 54.1 2.8 24 42-65 39-62 (339)
362 3crm_A TRNA delta(2)-isopenten 96.9 0.00045 1.5E-08 53.7 2.8 22 44-65 6-27 (323)
363 3kkq_A RAS-related protein M-R 96.9 0.00047 1.6E-08 47.9 2.7 21 45-65 20-40 (183)
364 2p65_A Hypothetical protein PF 96.9 0.00039 1.3E-08 48.2 2.3 25 42-66 42-66 (187)
365 2g6b_A RAS-related protein RAB 96.9 0.00048 1.6E-08 47.6 2.7 21 45-65 12-32 (180)
366 1z0f_A RAB14, member RAS oncog 96.9 0.00049 1.7E-08 47.4 2.7 21 45-65 17-37 (179)
367 1nrj_B SR-beta, signal recogni 96.9 0.00048 1.6E-08 49.5 2.7 22 45-66 14-35 (218)
368 2efe_B Small GTP-binding prote 96.9 0.00053 1.8E-08 47.5 2.8 21 45-65 14-34 (181)
369 3tmk_A Thymidylate kinase; pho 96.9 0.00051 1.7E-08 50.4 2.8 27 41-67 3-29 (216)
370 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.00057 2E-08 50.5 3.1 27 40-66 36-62 (262)
371 1ypw_A Transitional endoplasmi 96.9 0.00017 5.7E-09 62.5 0.2 31 36-66 504-534 (806)
372 2dby_A GTP-binding protein; GD 96.9 0.00044 1.5E-08 54.7 2.5 22 45-66 3-24 (368)
373 1m7b_A RND3/RHOE small GTP-bin 96.9 0.00047 1.6E-08 48.2 2.4 21 45-65 9-29 (184)
374 2wsm_A Hydrogenase expression/ 96.9 0.00048 1.7E-08 49.6 2.5 23 44-66 31-53 (221)
375 3iby_A Ferrous iron transport 96.9 0.00045 1.5E-08 51.7 2.4 22 45-66 3-24 (256)
376 2bov_A RAla, RAS-related prote 96.9 0.00054 1.9E-08 48.5 2.7 21 45-65 16-36 (206)
377 1jal_A YCHF protein; nucleotid 96.9 0.0006 2E-08 53.8 3.2 23 43-65 2-24 (363)
378 3ld9_A DTMP kinase, thymidylat 96.9 0.00054 1.8E-08 50.5 2.8 26 41-66 19-44 (223)
379 2bme_A RAB4A, RAS-related prot 96.8 0.0005 1.7E-08 47.9 2.4 21 45-65 12-32 (186)
380 2ocp_A DGK, deoxyguanosine kin 96.8 0.00049 1.7E-08 50.7 2.5 24 43-66 2-25 (241)
381 3tkl_A RAS-related protein RAB 96.8 0.00057 1.9E-08 48.0 2.7 21 45-65 18-38 (196)
382 1mh1_A RAC1; GTP-binding, GTPa 96.8 0.00058 2E-08 47.4 2.7 21 45-65 7-27 (186)
383 1wf3_A GTP-binding protein; GT 96.8 0.00052 1.8E-08 52.6 2.7 22 45-66 9-30 (301)
384 1u94_A RECA protein, recombina 96.8 0.0007 2.4E-08 53.2 3.5 26 40-65 60-85 (356)
385 3t5g_A GTP-binding protein RHE 96.8 0.00052 1.8E-08 47.6 2.4 21 45-65 8-28 (181)
386 1vg8_A RAS-related protein RAB 96.8 0.0006 2E-08 48.4 2.8 21 45-65 10-30 (207)
387 3cbq_A GTP-binding protein REM 96.8 0.00044 1.5E-08 49.2 2.1 20 45-64 25-44 (195)
388 2r62_A Cell division protease 96.8 0.00013 4.5E-09 54.4 -0.8 31 33-65 36-66 (268)
389 2gf9_A RAS-related protein RAB 96.8 0.00062 2.1E-08 47.8 2.7 21 45-65 24-44 (189)
390 2cjw_A GTP-binding protein GEM 96.8 0.00064 2.2E-08 48.2 2.7 21 45-65 8-28 (192)
391 2fg5_A RAB-22B, RAS-related pr 96.8 0.00059 2E-08 48.1 2.5 21 45-65 25-45 (192)
392 1sxj_D Activator 1 41 kDa subu 96.8 0.00023 8E-09 54.8 0.4 35 32-66 45-81 (353)
393 2gf0_A GTP-binding protein DI- 96.8 0.00054 1.8E-08 48.2 2.3 21 45-65 10-30 (199)
394 3a1s_A Iron(II) transport prot 96.8 0.00064 2.2E-08 50.9 2.7 21 45-65 7-27 (258)
395 1z06_A RAS-related protein RAB 96.8 0.00069 2.3E-08 47.5 2.8 21 45-65 22-42 (189)
396 3sr0_A Adenylate kinase; phosp 96.8 0.00066 2.3E-08 49.3 2.7 21 45-65 2-22 (206)
397 2a5j_A RAS-related protein RAB 96.8 0.00068 2.3E-08 47.7 2.8 21 45-65 23-43 (191)
398 1ksh_A ARF-like protein 2; sma 96.8 0.00059 2E-08 47.6 2.4 22 44-65 19-40 (186)
399 3t5d_A Septin-7; GTP-binding p 96.8 0.00055 1.9E-08 51.5 2.3 20 45-64 10-29 (274)
400 3bwd_D RAC-like GTP-binding pr 96.8 0.00083 2.8E-08 46.5 3.1 21 45-65 10-30 (182)
401 2ew1_A RAS-related protein RAB 96.8 0.00062 2.1E-08 48.8 2.4 21 45-65 28-48 (201)
402 2z4s_A Chromosomal replication 96.8 0.00057 1.9E-08 55.1 2.5 25 43-67 130-154 (440)
403 3iev_A GTP-binding protein ERA 96.8 0.00067 2.3E-08 52.1 2.7 23 44-66 11-33 (308)
404 3foz_A TRNA delta(2)-isopenten 96.8 0.00072 2.5E-08 52.3 2.9 23 43-65 10-32 (316)
405 2xtp_A GTPase IMAP family memb 96.8 0.00065 2.2E-08 50.4 2.5 22 45-66 24-45 (260)
406 3oes_A GTPase rhebl1; small GT 96.7 0.00065 2.2E-08 48.3 2.4 21 45-65 26-46 (201)
407 1zbd_A Rabphilin-3A; G protein 96.7 0.00074 2.5E-08 47.8 2.7 21 45-65 10-30 (203)
408 3reg_A RHO-like small GTPase; 96.7 0.00077 2.6E-08 47.5 2.7 21 45-65 25-45 (194)
409 1zj6_A ADP-ribosylation factor 96.7 0.00068 2.3E-08 47.5 2.4 21 45-65 18-38 (187)
410 3dz8_A RAS-related protein RAB 96.7 0.00068 2.3E-08 47.7 2.4 22 45-66 25-46 (191)
411 2v3c_C SRP54, signal recogniti 96.7 0.00066 2.2E-08 54.8 2.6 29 38-66 92-122 (432)
412 2atv_A RERG, RAS-like estrogen 96.7 0.0008 2.7E-08 47.5 2.8 21 45-65 30-50 (196)
413 3i8s_A Ferrous iron transport 96.7 0.00066 2.3E-08 51.2 2.5 22 45-66 5-26 (274)
414 1zd9_A ADP-ribosylation factor 96.7 0.00079 2.7E-08 47.3 2.7 21 45-65 24-44 (188)
415 1p5z_B DCK, deoxycytidine kina 96.7 0.00037 1.3E-08 52.1 1.0 26 41-66 22-47 (263)
416 2o52_A RAS-related protein RAB 96.7 0.0007 2.4E-08 48.1 2.4 21 45-65 27-47 (200)
417 1x3s_A RAS-related protein RAB 96.7 0.00082 2.8E-08 47.0 2.7 21 45-65 17-37 (195)
418 2fu5_C RAS-related protein RAB 96.7 0.00058 2E-08 47.5 1.9 21 45-65 10-30 (183)
419 2p5s_A RAS and EF-hand domain 96.7 0.00084 2.9E-08 47.6 2.8 21 45-65 30-50 (199)
420 2hf9_A Probable hydrogenase ni 96.7 0.00073 2.5E-08 48.8 2.4 23 44-66 39-61 (226)
421 2il1_A RAB12; G-protein, GDP, 96.7 0.00079 2.7E-08 47.5 2.6 21 45-65 28-48 (192)
422 2iwr_A Centaurin gamma 1; ANK 96.7 0.00062 2.1E-08 47.1 1.9 21 45-65 9-29 (178)
423 4bas_A ADP-ribosylation factor 96.7 0.00086 2.9E-08 47.1 2.7 21 45-65 19-39 (199)
424 3cph_A RAS-related protein SEC 96.7 0.00087 3E-08 47.7 2.7 21 45-65 22-42 (213)
425 3c5c_A RAS-like protein 12; GD 96.7 0.00091 3.1E-08 47.0 2.8 21 45-65 23-43 (187)
426 2fh5_B SR-beta, signal recogni 96.7 0.00088 3E-08 47.9 2.7 21 45-65 9-29 (214)
427 2bcg_Y Protein YP2, GTP-bindin 96.7 0.00079 2.7E-08 47.9 2.4 21 45-65 10-30 (206)
428 1gwn_A RHO-related GTP-binding 96.7 0.00079 2.7E-08 48.3 2.4 21 45-65 30-50 (205)
429 2f7s_A C25KG, RAS-related prot 96.7 0.00094 3.2E-08 47.8 2.8 21 45-65 27-47 (217)
430 2qu8_A Putative nucleolar GTP- 96.7 0.00081 2.8E-08 48.9 2.4 22 45-66 31-52 (228)
431 2q3h_A RAS homolog gene family 96.6 0.00096 3.3E-08 47.2 2.7 21 45-65 22-42 (201)
432 2fv8_A H6, RHO-related GTP-bin 96.6 0.00086 2.9E-08 47.9 2.5 21 45-65 27-47 (207)
433 2h57_A ADP-ribosylation factor 96.6 0.00066 2.3E-08 47.6 1.8 22 45-66 23-44 (190)
434 2h17_A ADP-ribosylation factor 96.6 0.00072 2.5E-08 47.1 2.0 22 45-66 23-44 (181)
435 2j1l_A RHO-related GTP-binding 96.6 0.00088 3E-08 48.2 2.5 21 45-65 36-56 (214)
436 3n70_A Transport activator; si 96.6 0.00099 3.4E-08 45.3 2.6 25 42-66 23-47 (145)
437 3bgw_A DNAB-like replicative h 96.6 0.0023 7.9E-08 51.7 5.1 33 33-65 187-219 (444)
438 2orw_A Thymidine kinase; TMTK, 96.6 0.0011 3.7E-08 47.2 2.8 22 42-63 2-24 (184)
439 2v1u_A Cell division control p 96.6 0.00079 2.7E-08 52.2 2.3 26 41-66 42-67 (387)
440 2gco_A H9, RHO-related GTP-bin 96.6 0.00099 3.4E-08 47.3 2.4 21 45-65 27-47 (201)
441 2b6h_A ADP-ribosylation factor 96.6 0.00094 3.2E-08 47.2 2.3 21 45-65 31-51 (192)
442 3syl_A Protein CBBX; photosynt 96.6 0.0012 4E-08 50.1 2.9 25 41-65 65-89 (309)
443 3llu_A RAS-related GTP-binding 96.6 0.001 3.6E-08 47.0 2.4 21 45-65 22-42 (196)
444 2atx_A Small GTP binding prote 96.6 0.0011 3.7E-08 46.6 2.5 21 45-65 20-40 (194)
445 1jwy_B Dynamin A GTPase domain 96.5 0.001 3.4E-08 50.7 2.4 23 45-67 26-48 (315)
446 3eph_A TRNA isopentenyltransfe 96.5 0.001 3.5E-08 53.2 2.5 22 44-65 3-24 (409)
447 2chg_A Replication factor C sm 96.5 0.0011 3.9E-08 46.9 2.5 21 45-65 40-60 (226)
448 3tqf_A HPR(Ser) kinase; transf 96.5 0.0018 6.1E-08 46.1 3.3 31 33-64 7-37 (181)
449 4dhe_A Probable GTP-binding pr 96.5 0.00042 1.4E-08 49.9 0.1 23 44-66 30-52 (223)
450 4hlc_A DTMP kinase, thymidylat 96.5 0.0013 4.4E-08 47.7 2.7 23 43-65 2-24 (205)
451 2g3y_A GTP-binding protein GEM 96.5 0.0014 4.6E-08 47.6 2.8 21 45-65 39-59 (211)
452 4gzl_A RAS-related C3 botulinu 96.5 0.0012 4E-08 47.2 2.4 21 45-65 32-52 (204)
453 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0013 4.4E-08 51.2 2.7 29 38-66 118-146 (331)
454 3dm5_A SRP54, signal recogniti 96.5 0.0013 4.5E-08 53.2 2.8 24 42-65 99-122 (443)
455 3gmt_A Adenylate kinase; ssgci 96.5 0.0015 5.1E-08 48.4 2.8 22 44-65 9-30 (230)
456 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0016 5.5E-08 50.2 3.1 27 41-67 43-69 (322)
457 3def_A T7I23.11 protein; chlor 96.5 0.0013 4.4E-08 49.1 2.5 22 45-66 38-59 (262)
458 2hup_A RAS-related protein RAB 96.5 0.0013 4.6E-08 46.7 2.5 21 45-65 31-51 (201)
459 1h65_A Chloroplast outer envel 96.4 0.0013 4.5E-08 49.3 2.4 22 45-66 41-62 (270)
460 2yc2_C IFT27, small RAB-relate 96.4 0.00068 2.3E-08 47.9 0.8 22 45-66 22-43 (208)
461 3hws_A ATP-dependent CLP prote 96.4 0.0015 5.1E-08 51.0 2.7 24 42-65 50-73 (363)
462 3cpj_B GTP-binding protein YPT 96.4 0.0015 5.1E-08 47.2 2.6 21 45-65 15-35 (223)
463 3t15_A Ribulose bisphosphate c 96.4 0.0017 5.7E-08 49.5 2.9 25 43-67 36-60 (293)
464 2x77_A ADP-ribosylation factor 96.4 0.0009 3.1E-08 46.9 1.3 20 45-64 24-43 (189)
465 3q3j_B RHO-related GTP-binding 96.4 0.0017 5.7E-08 46.8 2.7 21 45-65 29-49 (214)
466 2aka_B Dynamin-1; fusion prote 96.4 0.0013 4.5E-08 49.5 2.2 23 45-67 28-50 (299)
467 3uk6_A RUVB-like 2; hexameric 96.4 0.0017 5.7E-08 50.5 2.8 27 41-67 68-94 (368)
468 1ofh_A ATP-dependent HSL prote 96.4 0.0017 5.8E-08 49.0 2.7 24 43-66 50-73 (310)
469 2qgz_A Helicase loader, putati 96.4 0.002 6.8E-08 49.5 3.1 25 43-67 152-176 (308)
470 3cnl_A YLQF, putative uncharac 96.4 0.0015 5.3E-08 49.0 2.4 22 44-65 100-121 (262)
471 2j0v_A RAC-like GTP-binding pr 96.4 0.0016 5.6E-08 46.4 2.4 21 45-65 11-31 (212)
472 1d2n_A N-ethylmaleimide-sensit 96.3 0.0015 5.2E-08 48.8 2.3 25 42-66 63-87 (272)
473 3eie_A Vacuolar protein sortin 96.3 0.0021 7.3E-08 49.4 3.1 24 42-65 50-73 (322)
474 3p32_A Probable GTPase RV1496/ 96.3 0.0018 6.3E-08 50.6 2.8 24 42-65 78-101 (355)
475 3d8b_A Fidgetin-like protein 1 96.3 0.0022 7.5E-08 50.1 3.1 26 41-66 115-140 (357)
476 1xp8_A RECA protein, recombina 96.3 0.0022 7.6E-08 50.6 3.2 27 39-65 70-96 (366)
477 4dcu_A GTP-binding protein ENG 96.3 0.0017 5.8E-08 52.5 2.5 22 45-66 25-46 (456)
478 3pvs_A Replication-associated 96.3 0.0011 3.9E-08 53.6 1.5 31 35-65 40-72 (447)
479 2qby_B CDC6 homolog 3, cell di 96.3 0.0021 7.2E-08 50.0 2.9 24 43-66 45-68 (384)
480 4djt_A GTP-binding nuclear pro 96.3 0.0014 4.6E-08 47.0 1.5 21 45-65 13-33 (218)
481 1g8f_A Sulfate adenylyltransfe 96.2 0.0019 6.6E-08 53.1 2.4 28 41-68 393-420 (511)
482 1x6v_B Bifunctional 3'-phospho 96.2 0.0022 7.6E-08 54.0 2.7 25 42-66 51-75 (630)
483 2qen_A Walker-type ATPase; unk 96.2 0.0029 9.8E-08 48.3 3.1 24 43-66 31-54 (350)
484 1m8p_A Sulfate adenylyltransfe 96.1 0.0023 8E-08 53.3 2.6 25 42-66 395-419 (573)
485 3gj0_A GTP-binding nuclear pro 96.1 0.0016 5.6E-08 46.8 1.5 19 45-63 17-35 (221)
486 3l0i_B RAS-related protein RAB 96.1 0.0015 5.1E-08 46.3 1.2 20 45-64 35-54 (199)
487 3pfi_A Holliday junction ATP-d 96.1 0.0027 9.1E-08 48.8 2.6 23 44-66 56-78 (338)
488 1um8_A ATP-dependent CLP prote 96.1 0.0028 9.4E-08 49.7 2.7 24 43-66 72-95 (376)
489 3th5_A RAS-related C3 botulinu 95.1 0.00092 3.2E-08 47.5 0.0 21 45-65 32-52 (204)
490 1hqc_A RUVB; extended AAA-ATPa 96.1 0.0025 8.7E-08 48.5 2.4 23 43-65 38-60 (324)
491 1tue_A Replication protein E1; 96.1 0.0025 8.4E-08 46.6 2.2 27 40-66 55-81 (212)
492 2qp9_X Vacuolar protein sortin 96.1 0.0029 9.9E-08 49.5 2.7 26 41-66 82-107 (355)
493 3l0o_A Transcription terminati 96.0 0.003 1E-07 50.5 2.5 31 35-65 167-197 (427)
494 3r7w_A Gtpase1, GTP-binding pr 96.0 0.0029 9.9E-08 48.4 2.3 22 44-65 4-25 (307)
495 2bjv_A PSP operon transcriptio 96.0 0.0035 1.2E-07 46.5 2.7 24 43-66 29-52 (265)
496 4i1u_A Dephospho-COA kinase; s 96.0 0.0037 1.3E-07 45.6 2.6 20 45-64 11-30 (210)
497 3co5_A Putative two-component 95.9 0.0015 5.1E-08 44.3 0.5 25 42-66 26-50 (143)
498 2b8t_A Thymidine kinase; deoxy 95.9 0.0044 1.5E-07 45.6 2.8 24 41-64 10-33 (223)
499 2j37_W Signal recognition part 95.9 0.0035 1.2E-07 51.5 2.4 25 41-65 99-123 (504)
500 2zan_A Vacuolar protein sortin 95.9 0.0048 1.6E-07 49.7 3.1 26 41-66 165-190 (444)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.4e-34 Score=218.58 Aligned_cols=144 Identities=24% Similarity=0.349 Sum_probs=110.7
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
.+++++.++ +++|++.. .+|+|+||+|++||+++|+||||||||||+++|++....
T Consensus 5 ~~~l~i~~l-s~~y~~~~-~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~ 82 (275)
T 3gfo_A 5 DYILKVEEL-NYNYSDGT-HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL 82 (275)
T ss_dssp CEEEEEEEE-EEECTTSC-EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHH
T ss_pred CcEEEEEEE-EEEECCCC-eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHH
Confidence 356777776 99997543 489999999999999999999999999999999863211
Q ss_pred ceeeeccccchh---------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 70 KLRIGRHSRHLE---------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 70 ~~~~~~~~~~~~---------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
+..+++.+|... +.+ ...+++.++++.+++.+... +++.+|||||||||+||+|++.
T Consensus 83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~iAraL~~~ 161 (275)
T 3gfo_A 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-KPTHCLSFGQKKRVAIAGVLVME 161 (275)
T ss_dssp HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHHHHHHHHHHHHcC
Confidence 112455554321 110 11346778999999987654 5679999999999999998875
Q ss_pred -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRLI 158 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~ 158 (158)
+||+.++..+++.++++ +.|||+||||++++
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 69999999888887653 57999999999763
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.8e-34 Score=225.36 Aligned_cols=144 Identities=23% Similarity=0.338 Sum_probs=110.5
Q ss_pred chhhhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------
Q 044538 12 SPMLQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------- 69 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------- 69 (158)
.+|+++.++ +++|+.+ ...+|+||||+|++||+++|+||||||||||+++|++...+
T Consensus 22 ~~mi~v~~l-s~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 22 KHMIKLSNI-TKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp -CCEEEEEE-EEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CceEEEEeE-EEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 457777776 9999643 23589999999999999999999999999999999964211
Q ss_pred ---ceeeeccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 70 ---KLRIGRHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 70 ---~~~~~~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
+..+|+.+|.+ . +.. ...+++.++++.+|+.+..+ +++.+|||||||||+||+|++
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-CCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHh
Confidence 11355555432 1 111 11356788999999987655 567999999999999999977
Q ss_pred h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
. +||+.+...+++.++++ +.|||+||||+++
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~ 226 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 226 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 5 69999999998888654 6799999999754
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.9e-33 Score=210.53 Aligned_cols=141 Identities=25% Similarity=0.325 Sum_probs=105.9
Q ss_pred hhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------
Q 044538 15 LQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------- 69 (158)
Q Consensus 15 l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------- 69 (158)
+++.++ +++|+... ..+|+|+||+|++||+++|+||||||||||+++|++...+
T Consensus 2 l~~~~l-~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 2 VKLKNV-TKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEE-EEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEE-EEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 455555 88886432 3589999999999999999999999999999999863211
Q ss_pred -ceeeeccccch--------hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538 70 -KLRIGRHSRHL--------EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS 125 (158)
Q Consensus 70 -~~~~~~~~~~~--------~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~ 125 (158)
+..+++.+|.. .+.. ...+++.++++.+++.+...++++.+|||||||||+||+|+
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 01245544421 1110 11245677899999976443467799999999999999998
Q ss_pred hh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538 126 MY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR 156 (158)
Q Consensus 126 l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~ 156 (158)
+. +||+.+...+++.++++ +.|||+||||++
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 75 69999999999888654 679999999975
No 4
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.9e-33 Score=207.94 Aligned_cols=140 Identities=20% Similarity=0.273 Sum_probs=107.0
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------- 69 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------- 69 (158)
+|+++.++ +++|+. .++|+|+||+|++|++++|+||||||||||+++|++...+
T Consensus 3 ~~l~~~~l-~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 3 EILRAENI-KKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp EEEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHH
T ss_pred cEEEEEeE-EEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHH
Confidence 36676666 999965 3589999999999999999999999999999999863210
Q ss_pred -ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 70 -KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 70 -~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
...+++.+|.. .+.+ ...+++.++++.+++.+..+ +++.+|||||||||+||++++.
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-RKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHHHHHHTTTC
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHcC
Confidence 01244444321 0110 11245678899999987655 5779999999999999998775
Q ss_pred -----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+||+.+...+.+.++++ +.|||+||||++
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~ 201 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 69999999998888654 579999999964
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=6.7e-33 Score=220.82 Aligned_cols=139 Identities=22% Similarity=0.305 Sum_probs=107.3
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH 76 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~ 76 (158)
+++.++ +++|+. ..+|+|+||+|++||+++|+||||||||||+++|++.... ...+++.
T Consensus 4 l~~~~l-~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 4 VQLQNV-TKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp EEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEEeE-EEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence 555565 889964 3589999999999999999999999999999999974321 1235555
Q ss_pred ccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538 77 SRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------- 127 (158)
Q Consensus 77 ~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------- 127 (158)
+|.. . +++ ...+++.++++.+++.+... +++.+|||||||||+||+|++.
T Consensus 81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-CCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4431 1 111 11356788999999987655 5679999999999999999875
Q ss_pred ---CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ---HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+..+++.++++ +.|+|+||||+++
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 79999988888777554 6899999999753
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.3e-33 Score=219.99 Aligned_cols=140 Identities=24% Similarity=0.270 Sum_probs=106.7
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------ce
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KL 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~ 71 (158)
++.+.++ +++|++ ..+|+|+||+|++||+++|+||||||||||+++|++.... ..
T Consensus 4 ~l~i~~l-s~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHL-SKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeE-EEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 5666666 999964 3589999999999999999999999999999999964211 11
Q ss_pred eeeccccch--hhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 72 RIGRHSRHL--EDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 72 ~~~~~~~~~--~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
.+++.+|.. .+.+ ...+++.++++.+++.+..+ +++.+|||||||||+||+|++.
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRValArAL~~~P~l 159 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-RYPHELSGGQQQRAALARALAPDPEL 159 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 244444431 1111 12356788999999987655 5679999999999999999875
Q ss_pred --------CCCHHHHHHHHHHH----hhcCCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTL----DEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l----~~~~~tvi~vtHd~~~ 157 (158)
+||+..+..+++.+ ++.+.|+|+||||+++
T Consensus 160 LLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~e 201 (359)
T 3fvq_A 160 ILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREE 201 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 79999988887654 3446899999999753
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.98 E-value=1.3e-32 Score=217.63 Aligned_cols=142 Identities=25% Similarity=0.313 Sum_probs=109.2
Q ss_pred chhhhhheeeeEEc-CCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------cee
Q 044538 12 SPMLQLIEVISFSY-PNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLR 72 (158)
Q Consensus 12 ~~~l~~~~~~~~~~-~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~ 72 (158)
++++++.++ +++| +. ..+|+|+||+|++||+++|+||||||||||+++|++.... +..
T Consensus 12 ~~~l~~~~l-~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 12 SMTIEFVGV-EKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CEEEEEEEE-EECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred CceEEEEEE-EEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence 457777776 9988 43 3589999999999999999999999999999999964321 112
Q ss_pred eeccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 73 IGRHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 73 ~~~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
+++.+|.. . +.. ...+++.++++.+++.+..+ +++.+|||||||||+||+|++.
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-RFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 45544431 1 111 01346778999999987655 5679999999999999999875
Q ss_pred -------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+..+++.++++ +.|+|+||||+++
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 208 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE 208 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 79999999888877653 6799999999753
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.98 E-value=1.2e-32 Score=209.66 Aligned_cols=142 Identities=20% Similarity=0.209 Sum_probs=108.5
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~ 71 (158)
+|+++.++ +++|++ .++|+|+||+|++||+++|+||||||||||+++|++...+ +.
T Consensus 6 ~~l~i~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 6 EILRTENI-VKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp EEEEEEEE-EEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred cEEEEeee-EEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 46777776 999964 3589999999999999999999999999999999863210 01
Q ss_pred eeeccccch--h------h-------H---------------h---hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHH
Q 044538 72 RIGRHSRHL--E------D-------L---------------L---TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVR 118 (158)
Q Consensus 72 ~~~~~~~~~--~------~-------~---------------~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 118 (158)
.+++.+|.. . + . . ...+++.++++.+++.+... +++.+||||||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkQr 161 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-RKAGELSGGQMKL 161 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHH
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC-CCchhCCHHHHHH
Confidence 244443321 0 0 0 0 01245778899999976554 5679999999999
Q ss_pred HHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538 119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI 158 (158)
Q Consensus 119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~ 158 (158)
|+||++++. +||+.++..+++.++++ +.|||+||||++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 999998775 79999999999888665 57999999998764
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.98 E-value=1.3e-32 Score=210.44 Aligned_cols=141 Identities=23% Similarity=0.264 Sum_probs=107.3
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR 72 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~ 72 (158)
+++++.++ ++.|+. .++|+|+||+|++||+++|+||||||||||+++|++.... ...
T Consensus 10 ~~l~~~~l-~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 10 ALLEASHL-HYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CEEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred ceEEEEeE-EEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 56777676 888864 3589999999999999999999999999999999864211 001
Q ss_pred eeccccch--------hhHh----------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 73 IGRHSRHL--------EDLL----------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 73 ~~~~~~~~--------~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
+++.++.. .+.+ ...+++.++++.+++.+..+ +++.+|||||||||+||++++.
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-RDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-SBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 33333211 1111 12456788999999987655 5678999999999999999874
Q ss_pred -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+++.++++ +.|||+||||+++
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNL 210 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHH
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHH
Confidence 49999999999888664 3599999999754
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.98 E-value=1e-32 Score=210.65 Aligned_cols=140 Identities=23% Similarity=0.342 Sum_probs=106.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------ce
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KL 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~ 71 (158)
|+++.++ +++|++ ..+|+|+||+|++||+++|+||||||||||+++|++...+ +.
T Consensus 24 ~l~i~~l-~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQL-KKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeE-EEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5666666 888864 3589999999999999999999999999999999864211 01
Q ss_pred eeeccccch--------hhHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 72 RIGRHSRHL--------EDLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 72 ~~~~~~~~~--------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
.+++.+|.. .+.+ ...+++.++++.+++.+..+ +++.+|||||||||+||++++.
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~lAraL~~~p~ 179 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-AYPDSLSGGQAQRVAIARALAMEPK 179 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHCCCC
Confidence 244444321 0110 01245678899999976554 5779999999999999998775
Q ss_pred ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+++.++++ +.|||+||||+++
T Consensus 180 lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 221 (263)
T 2olj_A 180 IMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF 221 (263)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 69999999999888664 5799999999753
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.98 E-value=4.2e-32 Score=215.29 Aligned_cols=140 Identities=22% Similarity=0.277 Sum_probs=107.0
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeec
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGR 75 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~ 75 (158)
++++.++ +++|+. ..+|+|+||++++||+++|+||||||||||+++|++.... ...+++
T Consensus 3 ~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENI-VKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp CEEEEEE-EEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEeE-EEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence 3555565 888964 3589999999999999999999999999999999964321 112454
Q ss_pred cccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538 76 HSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------- 127 (158)
Q Consensus 76 ~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------- 127 (158)
.+|.. . +.. ...+++.++++.+++.+..+ +++.+|||||||||+||+|++.
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-RYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhh-CChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 44421 1 111 01246778999999987655 5679999999999999999775
Q ss_pred ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+..+.+.++++ +.|+|+||||+++
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 79999999888887654 6799999999753
No 12
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=2.9e-32 Score=207.12 Aligned_cols=141 Identities=22% Similarity=0.294 Sum_probs=107.8
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------eeeeccccch------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------LRIGRHSRHL------ 80 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------~~~~~~~~~~------ 80 (158)
|+.+.++ ++.|+.. .++|+++||+|++|++++|+||||||||||+++|++...+. ..+++.+|..
T Consensus 4 ~l~i~~l-~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~ 81 (253)
T 2nq2_C 4 ALSVENL-GFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81 (253)
T ss_dssp EEEEEEE-EEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred eEEEeeE-EEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence 5666666 8999622 35899999999999999999999999999999999754321 1244443321
Q ss_pred --hhH----------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538 81 --EDL----------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLD 130 (158)
Q Consensus 81 --~~~----------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD 130 (158)
.+. ....+++.++++.+++.+..+ +++.+|||||||||+||++++. +||
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 160 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-REFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSC
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 000 011355778999999986554 5679999999999999998875 699
Q ss_pred HHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 131 TQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 131 ~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+.++..+.+.++++ +.|||++|||+++
T Consensus 161 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 99999999888664 5799999999753
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=1.5e-32 Score=209.62 Aligned_cols=141 Identities=21% Similarity=0.327 Sum_probs=107.0
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------- 69 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------- 69 (158)
+|+++.++ +++|+. .++|+|+||+|++|++++|+||||||||||+++|++...+
T Consensus 5 ~~l~i~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 5 NKLHVIDL-HKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp CCEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred ceEEEeeE-EEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence 46777676 999964 3589999999999999999999999999999999863211
Q ss_pred ----------ceeeeccccch--------hhHh-------------hHHHHHHHHHHHcCCCCC-CCCCCCCCCChHHHH
Q 044538 70 ----------KLRIGRHSRHL--------EDLL-------------TMEEAVHAKLRKFGLPGH-NHLTPIANLSGGQKV 117 (158)
Q Consensus 70 ----------~~~~~~~~~~~--------~~~~-------------~~~~~~~~~l~~~~l~~~-~~~~~~~~LSgGqkq 117 (158)
+..+++.+|.. .+.+ ...+++.++++.+++.+. .. +++.+|||||||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~~LSgGq~q 160 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-KYPVHLSGGQQQ 160 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-SCGGGSCHHHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-CCcccCCHHHHH
Confidence 01144443321 0110 012456788999999765 44 567999999999
Q ss_pred HHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 118 RVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 118 rv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
||+||+|++. +||+.++..+++.++++ +.|||+||||+++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 215 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9999998875 69999999999888654 5799999999753
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=3.5e-32 Score=215.59 Aligned_cols=140 Identities=21% Similarity=0.265 Sum_probs=106.7
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeec
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGR 75 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~ 75 (158)
++.+.++ +++|+. ..+|+++||++++||+++|+||||||||||+++|++.... ...+++
T Consensus 3 ~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNL-KKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEE-EEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence 3555565 888864 3589999999999999999999999999999999964321 112454
Q ss_pred cccch--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538 76 HSRHL--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------- 127 (158)
Q Consensus 76 ~~~~~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------- 127 (158)
.+|.. .+.++ ..+++.++++.+++.+..+ +++.+|||||||||+||+|++.
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD-RKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 44421 11100 1246788999999987655 5679999999999999999875
Q ss_pred ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+..+.+.++++ +.|+|+||||+++
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 79999999888887654 6799999999753
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=2.8e-32 Score=205.74 Aligned_cols=141 Identities=17% Similarity=0.224 Sum_probs=106.7
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------c
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------K 70 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~ 70 (158)
.+|+.+.++ +++|+. .++|+++||+|++||+++|+||||||||||+++|++...+ +
T Consensus 4 ~~~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 80 (240)
T 1ji0_A 4 DIVLEVQSL-HVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CceEEEEeE-EEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 457777776 999965 3589999999999999999999999999999999864210 0
Q ss_pred eeeeccccch--------hhHh-----------hHHHHHHHHHHHcC-CCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 71 LRIGRHSRHL--------EDLL-----------TMEEAVHAKLRKFG-LPGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 71 ~~~~~~~~~~--------~~~~-----------~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
..+++.+|.. .+.+ ...+.+.++++.++ +.+... +++.+|||||||||+||++++.
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK-QLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT-SBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhc-CChhhCCHHHHHHHHHHHHHHcCCC
Confidence 1245444321 0110 11245667888884 876554 5679999999999999998875
Q ss_pred ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+||+.++..+++.++++ +.|||+||||++
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 79999999999888664 579999999974
No 16
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.97 E-value=6.8e-32 Score=200.49 Aligned_cols=139 Identities=23% Similarity=0.301 Sum_probs=107.2
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------ceeeecccc
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------KLRIGRHSR 78 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------~~~~~~~~~ 78 (158)
++++.++ +++|++ ++|+++||+|++||+++|+||||||||||+++|++...+ +..+++.+|
T Consensus 10 ~l~~~~l-s~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 10 KLEIRDL-SVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp EEEEEEE-EEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred eEEEEEE-EEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 5677776 999964 589999999999999999999999999999999864321 112444443
Q ss_pred ch--------hhHhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538 79 HL--------EDLLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H 128 (158)
Q Consensus 79 ~~--------~~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~ 128 (158)
.. .+.+. ..+++.++++.++++.. .+++.+||||||||++||++++. +
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~ 163 (214)
T 1sgw_A 86 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 163 (214)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence 21 11110 12457788999999876 46779999999999999988765 6
Q ss_pred CCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538 129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI 158 (158)
Q Consensus 129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~ 158 (158)
||+.++..+++.++++ +.|||++|||++++
T Consensus 164 LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 164 IDEDSKHKVLKSILEILKEKGIVIISSREELSY 196 (214)
T ss_dssp SCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTT
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999999888888665 47999999998764
No 17
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=3.1e-32 Score=209.63 Aligned_cols=141 Identities=25% Similarity=0.296 Sum_probs=107.0
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------c
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------K 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~ 70 (158)
+++.+.++ ++.|++ .++|+|+||+|++||+++|+||||||||||+++|++.... +
T Consensus 20 ~~l~~~~l-~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQI-GRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeE-EEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 46777666 999965 3589999999999999999999999999999999864211 0
Q ss_pred eeeeccccchh----------hHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 044538 71 LRIGRHSRHLE----------DLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV 124 (158)
Q Consensus 71 ~~~~~~~~~~~----------~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~ 124 (158)
..+++.+|... +.+ ...+++.++++.+++.+... +++.+|||||||||+||+|
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-QYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHH
Confidence 12444333210 000 01235677899999976554 5679999999999999998
Q ss_pred Hhh------------CCCHHHHHHHHHHHhhc---CCeE--EEEeecCCC
Q 044538 125 SMY------------HLDTQSIVAVAVTLDEF---AGGV--VLVSHDSRL 157 (158)
Q Consensus 125 ~l~------------~lD~~~~~~l~~~l~~~---~~tv--i~vtHd~~~ 157 (158)
++. +||+.++..+++.++++ +.|| |+||||+++
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~ 225 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE 225 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH
Confidence 875 69999999999888665 5789 999999865
No 18
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=8.3e-32 Score=205.95 Aligned_cols=143 Identities=24% Similarity=0.326 Sum_probs=107.7
Q ss_pred hhhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------ceee
Q 044538 14 MLQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------~~~~ 73 (158)
|+.+.++ +++|+... .++|+++||+|++|++++|+||||||||||+++|++.... +..+
T Consensus 2 ~l~~~~l-~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i 80 (266)
T 2yz2_A 2 RIEVVNV-SHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI 80 (266)
T ss_dssp CEEEEEE-EEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGE
T ss_pred EEEEEEE-EEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhE
Confidence 3555565 89996222 3589999999999999999999999999999999864211 1124
Q ss_pred eccccch---------hhHh--------h---HHHHHHHHHHHcCCC--CCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 74 GRHSRHL---------EDLL--------T---MEEAVHAKLRKFGLP--GHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 74 ~~~~~~~---------~~~~--------~---~~~~~~~~l~~~~l~--~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
++.+|.. .+.+ . ..+++.++++.+++. +..+ +++.+|||||||||+||++++.
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-CCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccccc-CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 5544431 0110 0 124577899999997 6554 5679999999999999998775
Q ss_pred --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI 158 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~ 158 (158)
+||+.+...+++.++++ +.|||+||||++++
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 69999999999888664 57999999998763
No 19
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.97 E-value=1.5e-31 Score=204.60 Aligned_cols=144 Identities=23% Similarity=0.343 Sum_probs=105.6
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--h---cce--------------
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--R---QKL-------------- 71 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--~---~~~-------------- 71 (158)
..+|+.+.++ ++.|++ .++|+|+||+|++|++++|+||||||||||+++|++.. . ..+
T Consensus 17 ~~~~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 93 (267)
T 2zu0_C 17 GSHMLSIKDL-HVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED 93 (267)
T ss_dssp ---CEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHH
T ss_pred CCceEEEEeE-EEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 3457777776 999964 35899999999999999999999999999999999852 1 000
Q ss_pred ----eeeccccch--------hh-------Hh------------hHHHHHHHHHHHcCCCCCCCCCCCC-CCChHHHHHH
Q 044538 72 ----RIGRHSRHL--------ED-------LL------------TMEEAVHAKLRKFGLPGHNHLTPIA-NLSGGQKVRV 119 (158)
Q Consensus 72 ----~~~~~~~~~--------~~-------~~------------~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv 119 (158)
.+++.+|.. .+ .. ...+++.++++.+++.....++++. +|||||||||
T Consensus 94 ~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv 173 (267)
T 2zu0_C 94 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 173 (267)
T ss_dssp HHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH
T ss_pred HhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 133333321 00 00 0123567889999996433335555 5999999999
Q ss_pred HHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 120 MFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 120 ~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+|++. +||+.++..+++.++++ +.|||+||||+++
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence 99998875 69999999999998776 4699999999864
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=5.3e-32 Score=213.82 Aligned_cols=138 Identities=20% Similarity=0.257 Sum_probs=105.3
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH 76 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~ 76 (158)
+.+.++ +++|+. . +|+++||++++||+++|+||||||||||+++|++.... +..+++.
T Consensus 2 l~~~~l-~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 2 IEIESL-SRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp EEEEEE-EEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEE-EEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 455555 888864 3 89999999999999999999999999999999974321 0124444
Q ss_pred ccch--hhHhhH---------------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538 77 SRHL--EDLLTM---------------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 77 ~~~~--~~~~~~---------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------ 127 (158)
+|.. .+.+++ .+++.++++.+++.+..+ +++.+|||||||||+||+|++.
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-RNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 4421 111110 156778999999987665 5679999999999999998765
Q ss_pred CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+..+.+.++++ +.|+|+||||+++
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 79999999888887654 5799999999753
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=5e-32 Score=206.15 Aligned_cols=140 Identities=17% Similarity=0.234 Sum_probs=106.7
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceee
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRI 73 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~ 73 (158)
+++++.++ ++.|+. ..+|+++||+|++||+++|+||||||||||+++|++...+ +..+
T Consensus 14 ~~l~i~~l-~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDL-RKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CCEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CeEEEEEE-EEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 35677666 999964 3589999999999999999999999999999999864211 0124
Q ss_pred eccccch--------hhHh---------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 74 GRHSRHL--------EDLL---------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 74 ~~~~~~~--------~~~~---------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
++.+|.. .+.+ . ..+++.++++.+++.+... +++.+|||||||||+||++++.
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~lll 169 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRVSTYSKGMVRKLLIARALMVNPRLAI 169 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-SBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 4444321 1111 0 1245678899999986554 5679999999999999998775
Q ss_pred ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+||+.++..+++.++++ +.|||++|||++
T Consensus 170 LDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 170 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207 (256)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred EeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 79999999999888664 579999999965
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=3.9e-32 Score=216.29 Aligned_cols=140 Identities=19% Similarity=0.279 Sum_probs=106.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------ 69 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------ 69 (158)
++++.++ +++|+. ..+|+|+||+|++||+++|+||||||||||+++|++....
T Consensus 3 ~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDV-WKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeE-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 3555565 888864 3589999999999999999999999999999999964211
Q ss_pred ceeeeccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 70 KLRIGRHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 70 ~~~~~~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
...+++.+|.. . +.. ...+++.++++.+++.+..+ +++.+|||||||||+||+|++.
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-RKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-CCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CCcccCCHHHHHHHHHHHHHhcCC
Confidence 11244444421 1 111 01246778999999987655 5679999999999999999775
Q ss_pred ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+..+.+.++++ +.|+|+||||+++
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 79999999888877654 6799999999753
No 23
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=6.5e-32 Score=214.91 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=106.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeec
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGR 75 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~ 75 (158)
++.+.++ +++|+. ..+|+++||+|++||+++|+||||||||||+++|++.... ...+++
T Consensus 11 ~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENL-TKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEE-EEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEE-EEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 3566666 888864 3589999999999999999999999999999999964321 112444
Q ss_pred cccch--hh------Hh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538 76 HSRHL--ED------LL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------- 127 (158)
Q Consensus 76 ~~~~~--~~------~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------- 127 (158)
.+|.. .+ .. ...+++.++++.+++.+..+ +++.+|||||||||+||+|++.
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLD 166 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSGGQRQRVAVARAIVVEPDVLLMD 166 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-SCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 44431 11 10 11246788999999987655 5679999999999999999775
Q ss_pred ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+..+.+.++++ +.|+|+||||+++
T Consensus 167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 204 (372)
T 1v43_A 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204 (372)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 79999999888887654 6799999999753
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=1.3e-31 Score=202.09 Aligned_cols=135 Identities=21% Similarity=0.234 Sum_probs=103.0
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH 76 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~ 76 (158)
+++.++ +++|+. +|+|+||++++ ++++|+||||||||||+++|++...+ +..+++.
T Consensus 2 l~~~~l-~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRA-EKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEEEE-EEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEE-EEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 455555 888853 49999999999 99999999999999999999964321 1124444
Q ss_pred ccch--h------hHh----------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 77 SRHL--E------DLL----------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 77 ~~~~--~------~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
+|.. . +.. ...+++.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 4321 0 110 11356778999999987654 5779999999999999998775
Q ss_pred -CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538 128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR 156 (158)
Q Consensus 128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~ 156 (158)
+||+.++..+++.++++ +.|||++|||++
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 69999999999888654 579999999975
No 25
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=2.8e-32 Score=215.92 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=106.2
Q ss_pred hhhhheeeeEEcCCCCCc--ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 14 MLQLIEVISFSYPNLQDI--RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~--~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
|+.+.++ +++|+. .. +|+|+||+|++||+++|+||||||||||+++|++....
T Consensus 3 ~l~i~~l-~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNV-SKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEE-EEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeE-EEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 4555565 888864 35 89999999999999999999999999999999964211
Q ss_pred -ceeeeccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 70 -KLRIGRHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 70 -~~~~~~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
+..+++.+|.. . +.. ...+++.++++.+++.+..+ +++.+|||||||||+||+|++.
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHhC
Confidence 11244444321 1 110 11356788999999987655 5679999999999999999875
Q ss_pred -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+..+.+.++++ +.|+|+||||+++
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999988888877654 6799999999753
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=3e-31 Score=201.21 Aligned_cols=140 Identities=21% Similarity=0.283 Sum_probs=100.5
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh--hhc---ce-----------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR--RRQ---KL----------------- 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~--~~~---~~----------------- 71 (158)
|+.+.++ +++|+. ..+|+|+||+|++||+++|+||||||||||+++|++. ..+ .+
T Consensus 3 ~l~~~~l-~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDL-WASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeE-EEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 4566666 888864 3589999999999999999999999999999999985 210 00
Q ss_pred -eeeccccch--------hhHh---------------hHHHHHHHHHHHcCCC-CCCCCCCCCC-CChHHHHHHHHHHHH
Q 044538 72 -RIGRHSRHL--------EDLL---------------TMEEAVHAKLRKFGLP-GHNHLTPIAN-LSGGQKVRVMFTLVS 125 (158)
Q Consensus 72 -~~~~~~~~~--------~~~~---------------~~~~~~~~~l~~~~l~-~~~~~~~~~~-LSgGqkqrv~ia~~~ 125 (158)
.+++.+|.. .+.. ...+++.++++.++++ ... ++++.+ |||||||||+||+++
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~~LSgGqkQrv~iAraL 158 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-SRYLNEGFSGGEKKRNEILQLL 158 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-GSBTTCC----HHHHHHHHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-cCCcccCCCHHHHHHHHHHHHH
Confidence 123333221 0100 0123566788999995 444 356788 999999999999987
Q ss_pred hh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 126 MY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 126 l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+. +||+.++..+++.++++ +.|||+||||+++
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI 205 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 75 79999999999988765 4699999999864
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.97 E-value=6e-31 Score=199.26 Aligned_cols=141 Identities=22% Similarity=0.296 Sum_probs=100.9
Q ss_pred hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538 16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR 75 (158)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~ 75 (158)
.+.++ +++|+++...+|+++||+|++||+++|+||||||||||+++|++.... +..+++
T Consensus 9 ~~~~l-~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~ 87 (247)
T 2ff7_A 9 TFRNI-RFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87 (247)
T ss_dssp EEEEE-EEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEE-EEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE
Confidence 45555 999942224689999999999999999999999999999999864211 012444
Q ss_pred cccch-------hhHhh------HHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 76 HSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 76 ~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
.+|.. .+.+. ..+++.++++.+++.+... .+++.+|||||||||+||++++.
T Consensus 88 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp ECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 44321 11110 1234556666666643211 13458999999999999999875
Q ss_pred -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+++.++++ +.|||+||||+++
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~ 206 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST 206 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 69999999999988765 5799999999764
No 28
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=4.9e-31 Score=201.37 Aligned_cols=139 Identities=22% Similarity=0.340 Sum_probs=106.8
Q ss_pred hhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-----------------eeee-
Q 044538 15 LQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-----------------LRIG- 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-----------------~~~~- 74 (158)
+.+.++ +++|++. ..++|+++||+++ |++++|+||||||||||+++|++.. +. ..++
T Consensus 2 l~~~~l-~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 2 IQLKNV-GITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp EEEEEE-EEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred EEEEEE-EEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 445555 8888641 1358999999999 9999999999999999999999753 21 1245
Q ss_pred ccccchh------hHhh--------HHHHHHHHHHHcCCC-CCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538 75 RHSRHLE------DLLT--------MEEAVHAKLRKFGLP-GHNHLTPIANLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 75 ~~~~~~~------~~~~--------~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~ia~~~l~------------ 127 (158)
+.+|... +.+. ..+++.++++.+++. +... +++.+||||||||++||++++.
T Consensus 79 ~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 157 (263)
T 2pjz_A 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157 (263)
T ss_dssp CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG-SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred EeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 5544321 1111 124567889999997 6544 5679999999999999998775
Q ss_pred CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 128 HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 ~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++..|||++|||+++
T Consensus 158 ~LD~~~~~~l~~~L~~~~~tviivtHd~~~ 187 (263)
T 2pjz_A 158 NVDAARRHVISRYIKEYGKEGILVTHELDM 187 (263)
T ss_dssp TCCHHHHHHHHHHHHHSCSEEEEEESCGGG
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 699999999999998876699999999764
No 29
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=196.23 Aligned_cols=143 Identities=19% Similarity=0.237 Sum_probs=99.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce----eeeccccch------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL----RIGRHSRHL------ 80 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~----~~~~~~~~~------ 80 (158)
++.+.++ ++.|+....++|+++||+|++|++++|+||||||||||+++|++...+ .+ .+++.+|..
T Consensus 3 ~l~~~~l-~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 3 SITVRNA-TFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS 81 (237)
T ss_dssp CEEEEEE-EEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred eEEEEEE-EEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence 3556566 999974334689999999999999999999999999999999976432 11 244444431
Q ss_pred -hhHhhH-----HHHHHHHHHHc------CCCCC----CCCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538 81 -EDLLTM-----EEAVHAKLRKF------GLPGH----NHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ 132 (158)
Q Consensus 81 -~~~~~~-----~~~~~~~l~~~------~l~~~----~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~ 132 (158)
.+.+.. .+...++++.+ ++.+. ...+++.+||||||||++||++++. +||+.
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 111100 11222333333 32211 0124678999999999999998875 69999
Q ss_pred HHHHHHHHHh---hc--CCeEEEEeecCCC
Q 044538 133 SIVAVAVTLD---EF--AGGVVLVSHDSRL 157 (158)
Q Consensus 133 ~~~~l~~~l~---~~--~~tvi~vtHd~~~ 157 (158)
+...+++.+. +. +.|||+||||+++
T Consensus 162 ~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 162 VGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp HHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 9999999884 32 5799999999875
No 30
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=207.21 Aligned_cols=143 Identities=18% Similarity=0.231 Sum_probs=108.4
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceee
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRI 73 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~ 73 (158)
..+.+.++ +++|+.+...+|+++||+|++||+++|+||||||||||+++|++.... +..+
T Consensus 18 ~~i~~~~l-~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDL-TAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEE-EEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEE-EEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence 35677666 999964445689999999999999999999999999999999974321 0123
Q ss_pred eccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCCCCCCCC-----------CChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNHLTPIAN-----------LSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqrv~ia~~~l~--- 127 (158)
++.+|.. .+.+. ..+++.++++.+++.+... +++.+ |||||||||+||||++.
T Consensus 97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~-~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIE-QFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHT-TSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHh-hcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 4444321 11111 1356778899999976554 34466 99999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+..+..+.+.+++. +.|+|+||||++.
T Consensus 176 lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~ 216 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEA 216 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGG
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHH
Confidence 69999999999999775 4699999999753
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=1.8e-30 Score=198.99 Aligned_cols=142 Identities=24% Similarity=0.358 Sum_probs=102.4
Q ss_pred hhhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ce
Q 044538 13 PMLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KL 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~ 71 (158)
+++.+.++ ++.|+.. ...+|+++||+|++|++++|+||||||||||+++|++...+ +.
T Consensus 15 ~~l~~~~l-~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 15 GLVKFQDV-SFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCEEEEEE-EECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred ceEEEEEE-EEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 46777666 8888651 24589999999999999999999999999999999864211 01
Q ss_pred eeeccccch-------hhHhh-----------HH-----HHHHHHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 72 RIGRHSRHL-------EDLLT-----------ME-----EAVHAKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 72 ~~~~~~~~~-------~~~~~-----------~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
.+++.+|.. .+.+. .. ..+.++++.+ ++..... +++.+|||||||||+||++++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG-ETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC-GGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhc-CCcCCCCHHHHHHHHHHHHHh
Confidence 244443321 01100 00 1123456666 5655444 567899999999999999987
Q ss_pred h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR 156 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~ 156 (158)
. +||+.+...+++.++++ +.|||+||||++
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 5 69999999999998765 469999999975
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=3.7e-30 Score=196.26 Aligned_cols=143 Identities=21% Similarity=0.300 Sum_probs=102.3
Q ss_pred hhhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------------eee
Q 044538 14 MLQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------------LRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------------~~~ 73 (158)
++.+.++ ++.|+... .++|+++||+|++|++++|+||||||||||+++|++..... ..+
T Consensus 17 ~l~i~~l-~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDV-NFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEE-EECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEE-EEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccE
Confidence 5666666 88886532 35899999999999999999999999999999998643210 113
Q ss_pred eccccch-------hhHh------hHHHHHHHHHHHcCCCCCC----------CCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRHL-------EDLL------TMEEAVHAKLRKFGLPGHN----------HLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~------~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
++.+|.. .+.+ ...+++.++++.+++.+.. ..+++.+|||||||||+||++++.
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 4433321 1111 0123455666666653210 113568999999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+++.++++ +.|||+||||+++
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~ 216 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST 216 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 69999999999888765 4699999999864
No 33
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=6.4e-31 Score=198.59 Aligned_cols=140 Identities=22% Similarity=0.291 Sum_probs=101.3
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~ 74 (158)
+.+.++ +++|++ ..++|+++||+|++|++++|+||||||||||+++|++.... +..++
T Consensus 2 l~~~~l-~~~y~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHV-DFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEE-EECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEE-EEEeCC-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 445555 888842 24589999999999999999999999999999999864211 01133
Q ss_pred ccccch-------hhHh-------hHHHHHHHHHHHcCCCCCCCC----------CCCCCCChHHHHHHHHHHHHhh---
Q 044538 75 RHSRHL-------EDLL-------TMEEAVHAKLRKFGLPGHNHL----------TPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~-------~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
+.+|.. .+.+ ...+++.++++.+++.+.... +++.+||||||||++||++++.
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 433321 1111 013456778888888664432 2457999999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
+||+.+...+++.++++ +.|||+||||++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~ 199 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLS 199 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 69998888888877654 579999999975
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=2.4e-30 Score=196.16 Aligned_cols=126 Identities=26% Similarity=0.299 Sum_probs=96.5
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--e-----------------eeeccccch--------hhH
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--L-----------------RIGRHSRHL--------EDL 83 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--~-----------------~~~~~~~~~--------~~~ 83 (158)
.+|+++||+|++||+++|+||||||||||+++|++..... + .+++.+|.. .+.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 4799999999999999999999999999999999753211 1 133333321 011
Q ss_pred hh-------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------------------CCCHHHHHHH
Q 044538 84 LT-------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------------------HLDTQSIVAV 137 (158)
Q Consensus 84 ~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------------------~lD~~~~~~l 137 (158)
+. ..+++.++++.+++.+..+ +++.+||||||||++||++++. +||+.++..+
T Consensus 94 l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l 172 (249)
T 2qi9_C 94 LTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172 (249)
T ss_dssp HHTTCSSTTCHHHHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred HHHhhccCCcHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence 10 1356778999999987655 5679999999999999988764 5899999999
Q ss_pred HHHHhhc---CCeEEEEeecCCC
Q 044538 138 AVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 138 ~~~l~~~---~~tvi~vtHd~~~ 157 (158)
.+.++++ +.|||++|||+++
T Consensus 173 ~~~l~~l~~~g~tviivtHd~~~ 195 (249)
T 2qi9_C 173 DKILSALSQQGLAIVMSSHDLNH 195 (249)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHHH
Confidence 9888665 5799999999753
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.97 E-value=2.4e-30 Score=193.96 Aligned_cols=142 Identities=17% Similarity=0.203 Sum_probs=98.5
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e----eeeccccch------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L----RIGRHSRHL------ 80 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~----~~~~~~~~~------ 80 (158)
++.+.++ ++.|+.+..++|+++||+|++|++++|+||||||||||+++|++...+. + .+++.+|..
T Consensus 6 ~l~~~~l-~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~t 84 (229)
T 2pze_A 6 EVVMENV-TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGT 84 (229)
T ss_dssp EEEEEEE-EECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBC
T ss_pred eEEEEEE-EEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCC
Confidence 5666666 8888643346899999999999999999999999999999999764321 1 244444421
Q ss_pred -hhHhhH-----HHHHHHHHHHcCCCCCC----------CCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538 81 -EDLLTM-----EEAVHAKLRKFGLPGHN----------HLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ 132 (158)
Q Consensus 81 -~~~~~~-----~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~ 132 (158)
.+.+.. .....+.++.+++.... ..+++.+||||||||++||++++. +||+.
T Consensus 85 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~ 164 (229)
T 2pze_A 85 IKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 164 (229)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHH
T ss_pred HHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHH
Confidence 111100 11223344444442110 112457999999999999998775 69999
Q ss_pred HHHHHHHH-Hhhc--CCeEEEEeecCC
Q 044538 133 SIVAVAVT-LDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 133 ~~~~l~~~-l~~~--~~tvi~vtHd~~ 156 (158)
+...+++. +++. +.|||++|||++
T Consensus 165 ~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 165 TEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp HHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 99999986 4443 479999999964
No 36
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=5.7e-30 Score=199.13 Aligned_cols=140 Identities=26% Similarity=0.338 Sum_probs=100.8
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+.+.++ +|+|+.. .++|+|+||+|++|++++|+||||||||||+++|++.... +..+
T Consensus 53 ~i~~~~v-s~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 53 RIEFENV-HFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CEEEEEE-EEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred eEEEEEE-EEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 4666666 9999754 3589999999999999999999999999999999864211 1124
Q ss_pred eccccch-------hhHhh------HHHHHHHHHHHcCCC-----------CCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLP-----------GHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~-----------~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
++.+|.. .+++. ..+++.++++.+++. .... ++..+||||||||++||||++.
T Consensus 131 ~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p 209 (306)
T 3nh6_A 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAP 209 (306)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCC
Confidence 4444431 11110 123444555554442 2222 3457999999999999999875
Q ss_pred ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
+||+.+...+.+.+++. +.|+|+||||++
T Consensus 210 ~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 210 GIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp SEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 69999999999988765 479999999975
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.95 E-value=2.9e-28 Score=203.86 Aligned_cols=142 Identities=26% Similarity=0.350 Sum_probs=104.1
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
++++.++ +++|++...++|+|+||++++||+++|+||||||||||++++++...+ +..+
T Consensus 341 ~i~~~~v-~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 341 EVDVKDV-TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred eEEEEEE-EEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 5666666 999975334689999999999999999999999999999999864211 1124
Q ss_pred eccccch-------hhHh-------hHHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh--
Q 044538 74 GRHSRHL-------EDLL-------TMEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~-------~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
++.+|.. .++. ..++++.++++.+++.+... ..+..+||||||||++||||++.
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p 499 (582)
T 3b5x_A 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA 499 (582)
T ss_pred EEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 4444431 1111 11345667777776643221 12357899999999999999875
Q ss_pred ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
+||+.+...+.+.+++. +.|+|+||||++
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 500 PVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 69999999999988775 479999999975
No 38
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=1.4e-28 Score=213.96 Aligned_cols=70 Identities=30% Similarity=0.522 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCCCC-CCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeec
Q 044538 88 EAVHAKLRKFGLPGHN-HLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHD 154 (158)
Q Consensus 88 ~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd 154 (158)
++++++++.+|+.... ..+++.+|||||||||+||++++. +||+.+...+.+.+++++.|||+||||
T Consensus 878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD 957 (986)
T 2iw3_A 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS 957 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSC
T ss_pred HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECC
Confidence 4567889999997432 235779999999999999988775 799999999999999998999999999
Q ss_pred CCC
Q 044538 155 SRL 157 (158)
Q Consensus 155 ~~~ 157 (158)
+++
T Consensus 958 ~e~ 960 (986)
T 2iw3_A 958 AEF 960 (986)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.95 E-value=7.4e-28 Score=201.26 Aligned_cols=143 Identities=24% Similarity=0.296 Sum_probs=102.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+++.++ +++|+....++|+|+||++++||+++|+||||||||||++++++...+ +..+
T Consensus 339 ~i~~~~v-~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 339 RIDIDHV-SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CEEEEEE-EECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred eEEEEEE-EEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 3566666 999976555789999999999999999999999999999999864221 1124
Q ss_pred eccccch-------hhHhh------HHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
++.+|.. .++.. .++++.++++..++.+... ..+..+||||||||++||||++.
T Consensus 418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 4444431 11111 1244555666655432111 12346899999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|+|+||||++.
T Consensus 498 illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 498 ILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 69999999999888765 4799999999864
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.95 E-value=8e-28 Score=201.19 Aligned_cols=143 Identities=24% Similarity=0.327 Sum_probs=103.9
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
++++.++ +++|++...++|+|+||++++||+++|+||||||||||++++++...+ +..+
T Consensus 341 ~i~~~~v-~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 341 DLEFRNV-TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CEEEEEE-EECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred cEEEEEE-EEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 5666666 899974324689999999999999999999999999999999864221 0124
Q ss_pred eccccch-------hhHh-------hHHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh--
Q 044538 74 GRHSRHL-------EDLL-------TMEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~-------~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
++.+|.. .++. ..++++.++++.+++.+... ..+..+||||||||++|||+++.
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p 499 (582)
T 3b60_A 420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_dssp EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred eEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 4444421 1111 11345666777776542111 12457999999999999999875
Q ss_pred ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|+|+||||++.
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b60_A 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_dssp SEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 69999999999888765 5799999999864
No 41
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=9.3e-28 Score=201.42 Aligned_cols=140 Identities=22% Similarity=0.343 Sum_probs=107.1
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccch-----
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHL----- 80 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~----- 80 (158)
+++.+.++ ++.|++ ..|+++||+|.+||+++|+||||||||||+++|++.... ...+++.+|..
T Consensus 356 ~~l~~~~l-~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~ 431 (607)
T 3bk7_A 356 TLVEYPRL-VKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431 (607)
T ss_dssp EEEEECCE-EEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEece-EEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCC
Confidence 46666666 888864 258999999999999999999999999999999975432 12355554431
Q ss_pred ---hhHh--------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538 81 ---EDLL--------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV 137 (158)
Q Consensus 81 ---~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l 137 (158)
.+.. ...+.+.++++.+++.+... +++.+|||||||||+||++++. +||+.++..+
T Consensus 432 ~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l 510 (607)
T 3bk7_A 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYD-RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510 (607)
T ss_dssp SBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTT-SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHH
Confidence 1111 01234667899999986554 6779999999999999988775 7999999999
Q ss_pred HHHHhhc----CCeEEEEeecCCC
Q 044538 138 AVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 138 ~~~l~~~----~~tvi~vtHd~~~ 157 (158)
.+.++++ +.|||+||||+++
T Consensus 511 ~~~l~~l~~~~g~tvi~vsHd~~~ 534 (607)
T 3bk7_A 511 SRAIRHLMEKNEKTALVVEHDVLM 534 (607)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9888764 5799999999754
No 42
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=6.5e-28 Score=200.11 Aligned_cols=139 Identities=24% Similarity=0.283 Sum_probs=101.2
Q ss_pred hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----------------------
Q 044538 16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K---------------------- 70 (158)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~---------------------- 70 (158)
++.+.++++|+.. ..+++++| +|++||+++|+||||||||||+++|++...+ .
T Consensus 22 ~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 22 QLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp --CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 4444459999653 24799999 9999999999999999999999999974311 0
Q ss_pred ------eeeeccccchh--hH---hhH---------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 71 ------LRIGRHSRHLE--DL---LTM---------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 71 ------~~~~~~~~~~~--~~---~~~---------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
..+++..+... +. .+. .+++.++++.+|+....+ +++.+|||||||||+||++++.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~-~~~~~LSgGekQRv~iAraL~~~P~ 178 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLE-REIQHLSGGELQRVAIAAALLRNAT 178 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTT-SBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhh-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 01111111110 00 011 134678899999986554 6789999999999999998775
Q ss_pred ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++.++.+.++++ +.|||+||||+++
T Consensus 179 lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~ 220 (538)
T 1yqt_A 179 FYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAV 220 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 79999999888888665 6899999999754
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=6.3e-28 Score=200.19 Aligned_cols=140 Identities=23% Similarity=0.332 Sum_probs=105.9
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccch-----
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHL----- 80 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~----- 80 (158)
+++.+.++ ++.|++ ..|+++||+|++||+++|+||||||||||+++|++.... ...+++.+|..
T Consensus 286 ~~l~~~~l-~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~ 361 (538)
T 1yqt_A 286 TLVTYPRL-VKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE 361 (538)
T ss_dssp EEEEECCE-EEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEeeE-EEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCC
Confidence 45666665 778854 358999999999999999999999999999999985432 12355554432
Q ss_pred ---hhHh--------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538 81 ---EDLL--------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV 137 (158)
Q Consensus 81 ---~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l 137 (158)
.+.. ...+.+.++++.+++.+.. ++++.+|||||||||+||++++. +||+.++..+
T Consensus 362 ~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i 440 (538)
T 1yqt_A 362 GTVYELLSKIDASKLNSNFYKTELLKPLGIIDLY-DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 440 (538)
T ss_dssp SBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGT-TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 1111 0123456778888987544 46789999999999999988765 7999999999
Q ss_pred HHHHhhc----CCeEEEEeecCCC
Q 044538 138 AVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 138 ~~~l~~~----~~tvi~vtHd~~~ 157 (158)
.+.++++ +.|||+||||+++
T Consensus 441 ~~~l~~l~~~~g~tvi~vsHd~~~ 464 (538)
T 1yqt_A 441 SRAIRHLMEKNEKTALVVEHDVLM 464 (538)
T ss_dssp HHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9888754 6799999999764
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.94 E-value=7.5e-28 Score=186.04 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=87.6
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce----eeeccccch-----
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL----RIGRHSRHL----- 80 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~----~~~~~~~~~----- 80 (158)
+++.+.++ ++. + ..+|+++||+|++|++++|+||||||||||+++|++.... .+ .+++.+|..
T Consensus 39 ~~l~~~~l-~~~--~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 113 (290)
T 2bbs_A 39 DSLSFSNF-SLL--G--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPG 113 (290)
T ss_dssp --------------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSS
T ss_pred ceEEEEEE-EEc--C--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcc
Confidence 35666555 553 2 3589999999999999999999999999999999976432 11 244444421
Q ss_pred --hhHhh----HHHHHHHHHHHcCCCCCC----------CCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538 81 --EDLLT----MEEAVHAKLRKFGLPGHN----------HLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ 132 (158)
Q Consensus 81 --~~~~~----~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~ 132 (158)
.+.+. ......+.++.+++.... ..+++.+||||||||++||++++. +||+.
T Consensus 114 tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~ 193 (290)
T 2bbs_A 114 TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 193 (290)
T ss_dssp BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHH
Confidence 11110 011223344445543211 112347999999999999998775 79999
Q ss_pred HHHHHHHHH-hhc--CCeEEEEeecCC
Q 044538 133 SIVAVAVTL-DEF--AGGVVLVSHDSR 156 (158)
Q Consensus 133 ~~~~l~~~l-~~~--~~tvi~vtHd~~ 156 (158)
++..+++.+ ++. +.|||+||||++
T Consensus 194 ~~~~i~~~ll~~~~~~~tviivtHd~~ 220 (290)
T 2bbs_A 194 TEKEIFESCVCKLMANKTRILVTSKME 220 (290)
T ss_dssp HHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 999999864 343 579999999964
No 45
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.94 E-value=1.8e-27 Score=199.53 Aligned_cols=141 Identities=24% Similarity=0.337 Sum_probs=103.1
Q ss_pred hhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 15 LQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 15 l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
+++.++ +++|++. ..++|+|+||++++||+++|+||||||||||+++|++...+ +..+
T Consensus 342 i~~~~v-~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 342 LEFKNV-HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp EEEEEE-EEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSE
T ss_pred EEEEEE-EEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhce
Confidence 566666 9999753 24689999999999999999999999999999999864211 0124
Q ss_pred eccccch-------hhHh---------hHHHHHHHHHHHcCCCCCC-------C---CCCCCCCChHHHHHHHHHHHHhh
Q 044538 74 GRHSRHL-------EDLL---------TMEEAVHAKLRKFGLPGHN-------H---LTPIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~---------~~~~~~~~~l~~~~l~~~~-------~---~~~~~~LSgGqkqrv~ia~~~l~ 127 (158)
++.+|.. .++. ..++++.++++.+++.+.. + ..+..+||||||||++||||++.
T Consensus 421 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 421 GTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc
Confidence 4444421 1111 1235667788887763211 1 12347999999999999999875
Q ss_pred ------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 ------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
+||+.+...+.+.+++. +.|+|+||||++
T Consensus 501 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 543 (595)
T 2yl4_A 501 NPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLS 543 (595)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 69999999999988765 579999999964
No 46
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=1e-27 Score=208.60 Aligned_cols=139 Identities=27% Similarity=0.382 Sum_probs=104.5
Q ss_pred hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh-hh-----cceeeeccccch---h-----
Q 044538 16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR-RR-----QKLRIGRHSRHL---E----- 81 (158)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~-~~-----~~~~~~~~~~~~---~----- 81 (158)
...++ ++.|++ ..+|+++||+|++|++++|+||||||||||+++|++. .. ....+++.++.. .
T Consensus 437 ~~~~l-s~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 437 CNCEF-SLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEE-EEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBH
T ss_pred EEeeE-EEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcH
Confidence 33344 788864 3589999999999999999999999999999999842 10 112234433221 1
Q ss_pred -hHhh-----HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhh
Q 044538 82 -DLLT-----MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDE 143 (158)
Q Consensus 82 -~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~ 143 (158)
+... ..+++.++++.+|+.....++++.+||||||||++||++++. +||+.++.++.+.|++
T Consensus 514 ~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 514 LDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh
Confidence 1110 045677899999995322346789999999999999998775 7999999999999988
Q ss_pred cCCeEEEEeecCCC
Q 044538 144 FAGGVVLVSHDSRL 157 (158)
Q Consensus 144 ~~~tvi~vtHd~~~ 157 (158)
.+.|||+||||+++
T Consensus 594 ~g~tvIivSHdl~~ 607 (986)
T 2iw3_A 594 CGITSITISHDSVF 607 (986)
T ss_dssp SCSEEEEECSCHHH
T ss_pred CCCEEEEEECCHHH
Confidence 67899999999754
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=9.7e-28 Score=198.96 Aligned_cols=140 Identities=15% Similarity=0.227 Sum_probs=102.7
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------eeeeccccchh---
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------LRIGRHSRHLE--- 81 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------~~~~~~~~~~~--- 81 (158)
+++.+.++ ++.|++ ..++.+||+|++||+++|+||||||||||+++|++..... ..+++.++...
T Consensus 268 ~~l~~~~l-~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 268 TKMKWTKI-IKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY 343 (538)
T ss_dssp EEEEECCE-EEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCC
T ss_pred ceEEEcce-EEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhccccc
Confidence 34555555 777764 3578889999999999999999999999999999754321 12333333211
Q ss_pred -----hHhh---------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHH
Q 044538 82 -----DLLT---------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIV 135 (158)
Q Consensus 82 -----~~~~---------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~ 135 (158)
+.+. ....+.++++.+++.+... +++.+|||||||||+||++++. +||+.++.
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 422 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERY 422 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTT-SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 1110 1134567788888876554 6779999999999999998775 79999999
Q ss_pred HHHHHHhhc----CCeEEEEeecCCC
Q 044538 136 AVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 136 ~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
.+.+.++++ +.|||+||||+++
T Consensus 423 ~i~~~l~~l~~~~g~tvi~vsHdl~~ 448 (538)
T 3ozx_A 423 IVAKAIKRVTRERKAVTFIIDHDLSI 448 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 988888654 5799999999764
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=1.2e-27 Score=200.69 Aligned_cols=134 Identities=22% Similarity=0.277 Sum_probs=99.7
Q ss_pred eeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c---------------------------
Q 044538 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K--------------------------- 70 (158)
Q Consensus 21 ~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~--------------------------- 70 (158)
++++|+... .+++++| ++++||+++|+||||||||||+++|++...+ .
T Consensus 97 ls~~yg~~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 174 (607)
T 3bk7_A 97 CVHRYGVNA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174 (607)
T ss_dssp EEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHT
T ss_pred eEEEECCCC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhh
Confidence 488886532 4799999 9999999999999999999999999864311 0
Q ss_pred -eeeeccccchh--hH---hhH---------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538 71 -LRIGRHSRHLE--DL---LTM---------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------- 127 (158)
Q Consensus 71 -~~~~~~~~~~~--~~---~~~---------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------- 127 (158)
..+++.++... .. .+. .+++.++++.+|+....+ +++.+|||||||||+||++++.
T Consensus 175 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~-~~~~~LSGGekQRvaIAraL~~~P~lLlLD 253 (607)
T 3bk7_A 175 EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLD-RELHQLSGGELQRVAIAAALLRKAHFYFFD 253 (607)
T ss_dssp SCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGG-SBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred hcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhC-CChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 01111111110 00 011 134678899999987554 6789999999999999998775
Q ss_pred ----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.|+++ +.|||+||||+++
T Consensus 254 EPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~ 290 (607)
T 3bk7_A 254 EPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV 290 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence 79999999888888765 6799999999753
No 49
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=7.3e-27 Score=195.57 Aligned_cols=141 Identities=20% Similarity=0.273 Sum_probs=101.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+++.++ +++|+....++|+|+||++++||+++|+||||||||||++++++...+ +..+
T Consensus 341 ~i~~~~v-~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 341 SVSFENV-EFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CEEEEEE-EECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred cEEEEEE-EEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 4666666 999976555789999999999999999999999999999999864221 1124
Q ss_pred eccccch-------hhHhh------HHHHHHHHHHHcCC-----------CCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGL-----------PGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
++.+|.. .++.. ..+++.+.++..++ +.... ++..+||||||||++||||++.
T Consensus 420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p 498 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKP 498 (587)
T ss_dssp EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCC
T ss_pred EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCC
Confidence 4444431 11111 12334444444433 22222 3557999999999999999875
Q ss_pred ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
+||+.+...+.+.+++. +.|+|+||||++
T Consensus 499 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 539 (587)
T 3qf4_A 499 KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539 (587)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChH
Confidence 69999999999988765 479999999974
No 50
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=7.1e-27 Score=196.01 Aligned_cols=142 Identities=20% Similarity=0.267 Sum_probs=99.9
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+++.++ +++|+.. .++|+|+||++++||+++|+||||||||||++++++...+ +..+
T Consensus 354 ~i~~~~v-~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 354 EIEFKNV-WFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CEEEEEE-ECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred eEEEEEE-EEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 3566665 8888653 3589999999999999999999999999999999864321 1124
Q ss_pred eccccch-------hhHhh------HHHHHHHHHHHcCCCCCCCCC----------CCCCCChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNHLT----------PIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
++.+|.. .++.. .++++.++++.+++.+..... +..+||||||||++||||++.
T Consensus 432 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~ 511 (598)
T 3qf4_B 432 GIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPK 511 (598)
T ss_dssp EEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCS
T ss_pred EEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4444431 11110 113445555555543221111 126899999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|+|+||||++.
T Consensus 512 illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 552 (598)
T 3qf4_B 512 ILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT 552 (598)
T ss_dssp EEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 69999999999888765 5799999999863
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.5e-27 Score=198.77 Aligned_cols=134 Identities=23% Similarity=0.386 Sum_probs=100.4
Q ss_pred eEEcCCCCCcceeeeeEEeeCC-----CEEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccch--------h
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMG-----TCVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHL--------E 81 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G-----~~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~--------~ 81 (158)
.+.|+... .+++++||++.+| |+++|+||||||||||+++|++.... ...+++.++.. .
T Consensus 353 ~~~y~~~~-~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~ 431 (608)
T 3j16_B 353 AFSYPSLK-KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVR 431 (608)
T ss_dssp CCEECCEE-EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHH
T ss_pred eEEecCcc-cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHH
Confidence 66776432 3688999999999 88999999999999999999975432 12244433321 1
Q ss_pred hHh--------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHH
Q 044538 82 DLL--------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141 (158)
Q Consensus 82 ~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l 141 (158)
+.+ ...+.+.++++.+++.+..+ +++.+|||||||||+||++++. +||+.++..+.+.+
T Consensus 432 e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll 510 (608)
T 3j16_B 432 QLFFKKIRGQFLNPQFQTDVVKPLRIDDIID-QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510 (608)
T ss_dssp HHHHHHCSSTTTSHHHHHHTHHHHTSTTTSS-SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccccHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 111 01244667889999987655 6779999999999999988764 79999999888887
Q ss_pred hhc----CCeEEEEeecCCC
Q 044538 142 DEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 142 ~~~----~~tvi~vtHd~~~ 157 (158)
+++ +.|||+||||+++
T Consensus 511 ~~l~~~~g~tviivtHdl~~ 530 (608)
T 3j16_B 511 RRFILHNKKTAFIVEHDFIM 530 (608)
T ss_dssp HHHHHHHTCEEEEECSCHHH
T ss_pred HHHHHhCCCEEEEEeCCHHH
Confidence 654 6799999999764
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-25 Score=188.62 Aligned_cols=134 Identities=24% Similarity=0.379 Sum_probs=97.5
Q ss_pred eeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce-ee--------------ec----------
Q 044538 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL-RI--------------GR---------- 75 (158)
Q Consensus 21 ~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~-~~--------------~~---------- 75 (158)
++++|+... ..+++++ .+.+||+++|+||||||||||+++|++...+.. .+ +.
T Consensus 83 ~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 83 VTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp EEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred eEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 488887543 3566666 689999999999999999999999996432110 00 00
Q ss_pred --------cccchh--------------hHhh-----HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 76 --------HSRHLE--------------DLLT-----MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 76 --------~~~~~~--------------~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
.++... ..+. ..+++.++++.+++....+ +++.+|||||||||+||++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGe~Qrv~iAraL~~~ 239 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK-RDIEKLSGGELQRFAIGMSCVQE 239 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGG-SCTTTCCHHHHHHHHHHHHHHSC
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhC-CChHHCCHHHHHHHHHHHHHHhC
Confidence 000000 0000 1256788999999987654 6789999999999999998765
Q ss_pred -----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||+||||+++
T Consensus 240 p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~ 283 (608)
T 3j16_B 240 ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV 283 (608)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 69999999888888765 4799999999754
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=7.2e-26 Score=192.01 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEE
Q 044538 89 AVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVL 150 (158)
Q Consensus 89 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~ 150 (158)
+..+.+..+++.....++++.+|||||||||+||++++. +||+.....+++.++++ +.|||+
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 455678888886544446789999999999999998842 69999999888887654 579999
Q ss_pred EeecCCC
Q 044538 151 VSHDSRL 157 (158)
Q Consensus 151 vtHd~~~ 157 (158)
||||+++
T Consensus 602 vtHd~~~ 608 (670)
T 3ux8_A 602 IEHNLDV 608 (670)
T ss_dssp ECCCHHH
T ss_pred EeCCHHH
Confidence 9999753
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=3.8e-26 Score=193.70 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=52.6
Q ss_pred HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhc---CCeEEEEeecC
Q 044538 93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDS 155 (158)
Q Consensus 93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~ 155 (158)
+++.+|+.+...++++.+|||||||||+||+|++. +||+..+.++++.++++ +.|||+||||+
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 47888997654446789999999999999998864 68999888888877654 57999999997
Q ss_pred C
Q 044538 156 R 156 (158)
Q Consensus 156 ~ 156 (158)
+
T Consensus 265 ~ 265 (670)
T 3ux8_A 265 D 265 (670)
T ss_dssp H
T ss_pred H
Confidence 5
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.92 E-value=2.2e-25 Score=200.27 Aligned_cols=143 Identities=24% Similarity=0.308 Sum_probs=104.9
Q ss_pred hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538 14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~ 72 (158)
-+++.++ +|+|+.. ..++|+|+||+|++||.+||+||||||||||+++|.+.... +..
T Consensus 1076 ~I~f~nV-sf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1076 KVIFKNV-RFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CEEEEEE-EECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred eEEEEEE-EEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 3666666 9999754 34689999999999999999999999999999999843210 112
Q ss_pred eeccccch-------hhHh--------hHHHHHHHHHHHcCCCCCC------CCC----CCCCCChHHHHHHHHHHHHhh
Q 044538 73 IGRHSRHL-------EDLL--------TMEEAVHAKLRKFGLPGHN------HLT----PIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 73 ~~~~~~~~-------~~~~--------~~~~~~~~~l~~~~l~~~~------~~~----~~~~LSgGqkqrv~ia~~~l~ 127 (158)
+++.+|+. .++. ..++++.++++..++.+.. .+. ...+||||||||+|||||++.
T Consensus 1155 i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr 1234 (1321)
T 4f4c_A 1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR 1234 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS
T ss_pred eEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh
Confidence 44444432 1111 1245677777777663211 111 235799999999999999875
Q ss_pred ------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+++...+.+.+++. ++|+|+|+|.+..
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsT 1278 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNT 1278 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSST
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence 69999999999999875 4799999999864
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=1e-24 Score=195.51 Aligned_cols=142 Identities=23% Similarity=0.302 Sum_probs=100.0
Q ss_pred hhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 15 LQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 15 l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
+++.++ +++|+.. ..++|+|+||+|++||++||+||||||||||+++|.+.... +..+
T Consensus 1031 i~~~~v-~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A 1031 VQFSGV-VFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp EEEEEE-EBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred EEEEEE-EEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence 556565 8888753 23589999999999999999999999999999999864211 1124
Q ss_pred eccccch-------hhHh--------hHHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh-
Q 044538 74 GRHSRHL-------EDLL--------TMEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~--------~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
++.+|+. .+++ ...+++.+.++..++.+... .....+||||||||++|||+++.
T Consensus 1110 ~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A 1110 GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp EEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred EEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence 4444432 1111 01234444555444322111 12346899999999999999875
Q ss_pred -----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|+|+||||++.
T Consensus 1190 p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST 1232 (1284)
T ss_dssp CSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTG
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHH
Confidence 69999999999998765 4699999999875
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.91 E-value=1.4e-24 Score=195.16 Aligned_cols=142 Identities=23% Similarity=0.300 Sum_probs=102.8
Q ss_pred hhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 15 LQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 15 l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
+++.++ +|+|+.. ..++|+|+||+|++|+.++|+||||||||||+++|.+.... +..+
T Consensus 416 I~~~nv-sF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 416 ITVENV-HFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp EEEEEE-EECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred EEEEEe-eeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 566666 9999753 35789999999999999999999999999999999864221 1124
Q ss_pred eccccch-------hhHh------hHHHHHHHHHHHcCCCCC------CCC----CCCCCCChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRHL-------EDLL------TMEEAVHAKLRKFGLPGH------NHL----TPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~------~~~~~~~~~l~~~~l~~~------~~~----~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
++.+|.. .++. ..++++.++++..++.+. -.+ .....||||||||++||||++.
T Consensus 495 ~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~ 574 (1321)
T 4f4c_A 495 AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574 (1321)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCS
T ss_pred cccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCC
Confidence 5555432 1111 113556666666554221 111 1346899999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+++...+.+.+.+. +.|+|+|||++..
T Consensus 575 IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 575 ILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence 69999888888888775 5799999999865
No 58
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=1.2e-24 Score=195.01 Aligned_cols=140 Identities=24% Similarity=0.335 Sum_probs=98.4
Q ss_pred hhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 15 LQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 15 l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
+++.++ +|+|+.. ..++|+|+||++++||+++|+||||||||||+++|.+.... +..+
T Consensus 388 i~~~~v-~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 388 LEFKNI-HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp EEEEEE-EECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEE-EEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 566666 9999754 34689999999999999999999999999999999864211 1124
Q ss_pred eccccch-------hhHhh------HHHHHHHHHHHcCC-----------CCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGL-----------PGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
++.+|.. .++.. ..+++.+.++..++ +.... .+..+||||||||++||||++.
T Consensus 467 ~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~-~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG-ERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp EEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCS-SSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccc-CCCCccCHHHHHHHHHHHHHhcCC
Confidence 5544432 11111 12334444443332 22222 2456899999999999999875
Q ss_pred ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
+||+++...+.+.+++. +.|+|+|||+++
T Consensus 546 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 586 (1284)
T 3g5u_A 546 KILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586 (1284)
T ss_dssp SEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 69999998888888653 579999999974
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.91 E-value=1.1e-24 Score=180.60 Aligned_cols=132 Identities=19% Similarity=0.223 Sum_probs=94.4
Q ss_pred eEEcCCCCCcceeeeeEEee-CCCEEEEECCCCCCcchHHHHHHhhhhcc---e--------------------------
Q 044538 22 SFSYPNLQDIRLSNVDMGID-MGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L-------------------------- 71 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~-~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~-------------------------- 71 (158)
..+|+.+. ++-..+.+. +||++||+||||||||||+++|++...+. .
T Consensus 6 ~~~~~~~~---f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 6 IHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp EEESSTTS---CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred ceecCCCc---eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 67887543 555566664 99999999999999999999999643211 0
Q ss_pred ----eeeccccchh-----------hHhh---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 72 ----RIGRHSRHLE-----------DLLT---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 72 ----~~~~~~~~~~-----------~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
.+....+... +... ..+++.++++.+++....+ +++.+|||||||||+||+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN-KDANILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0000000000 0000 0124677899999976554 6789999999999999998775
Q ss_pred ------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.++.++.+.++++ +.|||+||||+++
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~ 199 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIV 199 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHH
Confidence 69999999998888776 5799999999754
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.88 E-value=6.7e-23 Score=146.77 Aligned_cols=121 Identities=10% Similarity=0.018 Sum_probs=74.1
Q ss_pred eeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ceeeeccccch----hhH--hhHHHHHHHHHHHcCCCCCCCC
Q 044538 35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLRIGRHSRHL----EDL--LTMEEAVHAKLRKFGLPGHNHL 105 (158)
Q Consensus 35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~~~~~~~~~----~~~--~~~~~~~~~~l~~~~l~~~~~~ 105 (158)
|+||++++||+++|+||||||||||++++...... ....++..+.. ... ..............+......
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 79 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVD- 79 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEE-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEE-
Confidence 68999999999999999999999999965421100 00001111111 000 000111112223345443322
Q ss_pred CCCCCCChHHHHHHHHHHHHhh------------CCCHH----------------HHHHHHHHHhh---cCCeEEEEeec
Q 044538 106 TPIANLSGGQKVRVMFTLVSMY------------HLDTQ----------------SIVAVAVTLDE---FAGGVVLVSHD 154 (158)
Q Consensus 106 ~~~~~LSgGqkqrv~ia~~~l~------------~lD~~----------------~~~~l~~~l~~---~~~tvi~vtHd 154 (158)
.....|||||||++||+++.. +||+. ....+.+.+++ .+.|+|+||||
T Consensus 80 -~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~ 158 (171)
T 4gp7_A 80 -ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNS 158 (171)
T ss_dssp -SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECS
T ss_pred -CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCC
Confidence 235679999999999988764 57777 44677777543 36799999999
Q ss_pred CCC
Q 044538 155 SRL 157 (158)
Q Consensus 155 ~~~ 157 (158)
+++
T Consensus 159 ~~~ 161 (171)
T 4gp7_A 159 PEE 161 (171)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=1.4e-22 Score=175.86 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEE
Q 044538 88 EAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVV 149 (158)
Q Consensus 88 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi 149 (158)
.+..+.++.+|+......+++.+|||||||||+||++++. +||+.....+++.|+++ +.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 3456788999997544446789999999999999998852 69999999988888654 67999
Q ss_pred EEeecCCC
Q 044538 150 LVSHDSRL 157 (158)
Q Consensus 150 ~vtHd~~~ 157 (158)
+||||+++
T Consensus 863 vI~HdL~~ 870 (916)
T 3pih_A 863 VIEHNLDV 870 (916)
T ss_dssp EECCCHHH
T ss_pred EEeCCHHH
Confidence 99999753
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.84 E-value=1.4e-21 Score=169.46 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=55.6
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEEE
Q 044538 90 VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVLV 151 (158)
Q Consensus 90 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~v 151 (158)
..++++.+++......+++.+|||||||||+||++++. +||+.....+++.|+++ +.|||+|
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 904 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 904 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45788999997633346789999999999999988872 59999999888887654 5799999
Q ss_pred eecCCC
Q 044538 152 SHDSRL 157 (158)
Q Consensus 152 tHd~~~ 157 (158)
|||+++
T Consensus 905 sHdl~~ 910 (972)
T 2r6f_A 905 EHNLDV 910 (972)
T ss_dssp CCCHHH
T ss_pred cCCHHH
Confidence 999753
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.84 E-value=1.9e-21 Score=167.74 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEE
Q 044538 89 AVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVL 150 (158)
Q Consensus 89 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~ 150 (158)
++.++++.+++......+++.+|||||||||+||++++. +||+.....+++.++++ +.|||+
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 456788999997643346789999999999999988764 48999998888877654 679999
Q ss_pred EeecCCC
Q 044538 151 VSHDSRL 157 (158)
Q Consensus 151 vtHd~~~ 157 (158)
||||+++
T Consensus 789 isHdl~~ 795 (842)
T 2vf7_A 789 VEHKMQV 795 (842)
T ss_dssp ECCCHHH
T ss_pred EcCCHHH
Confidence 9999764
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.5e-24 Score=172.14 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=92.5
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---c-c-ee--------eecccc
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---Q-K-LR--------IGRHSR 78 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~-~-~~--------~~~~~~ 78 (158)
.+|+.+.++ ++.|+ ++||++++|++++|+||||||||||+|+|++... . . +. +++.++
T Consensus 116 ~~mi~~~nl-~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq 186 (460)
T 2npi_A 116 HTMKYIYNL-HFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPG 186 (460)
T ss_dssp CTHHHHHHH-HHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSS
T ss_pred cchhhhhhh-hehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeecc
Confidence 467887777 77764 7999999999999999999999999999997532 2 2 21 223322
Q ss_pred ch-----hhHhhHH---------------HHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH--Hhh---------
Q 044538 79 HL-----EDLLTME---------------EAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV--SMY--------- 127 (158)
Q Consensus 79 ~~-----~~~~~~~---------------~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~--~l~--------- 127 (158)
.. ...++.. +++.++++.+|+..... +.+||||||||+++|++ ++.
T Consensus 187 ~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~~p~i~~sGL 263 (460)
T 2npi_A 187 CISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHLDPQVRRSGC 263 (460)
T ss_dssp CCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred chhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence 21 0000110 12334455666654332 57899999999999988 432
Q ss_pred --------CCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538 128 --------HLDTQSIVAVAVTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~ 156 (158)
+||+. ...+.+.+++++.|+|+||||.+
T Consensus 264 lLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~ 299 (460)
T 2npi_A 264 IVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSET 299 (460)
T ss_dssp EEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSS
T ss_pred EEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCc
Confidence 47777 77788888888889999999976
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.84 E-value=2.6e-21 Score=168.28 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=55.1
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEEE
Q 044538 90 VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVLV 151 (158)
Q Consensus 90 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~v 151 (158)
..++++.+++......+++.+|||||||||+||++++. +||+.....+++.|+++ +.|||+|
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 922 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVI 922 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45678899997633346789999999999999988873 59999999888887654 6799999
Q ss_pred eecCCC
Q 044538 152 SHDSRL 157 (158)
Q Consensus 152 tHd~~~ 157 (158)
|||+++
T Consensus 923 sHdl~~ 928 (993)
T 2ygr_A 923 EHNLDV 928 (993)
T ss_dssp CCCHHH
T ss_pred cCCHHH
Confidence 999753
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.80 E-value=3.2e-20 Score=148.85 Aligned_cols=46 Identities=30% Similarity=0.475 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538 111 LSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR 156 (158)
Q Consensus 111 LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~ 156 (158)
||||||||++||++++. +||+.....+.+.|+++. .+||+||||++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~ 357 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ 357 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 69999999999987654 688999999999998874 79999999964
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.76 E-value=1.4e-18 Score=137.95 Aligned_cols=51 Identities=29% Similarity=0.476 Sum_probs=43.6
Q ss_pred CCCCCCChHHHHHHHHHHHHh------h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 106 TPIANLSGGQKVRVMFTLVSM------Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 106 ~~~~~LSgGqkqrv~ia~~~l------~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+++.+||||||||++||++++ . +||+.....+++.++++ +.|||+||||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~ 346 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE 346 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 466899999999999998876 1 69999999999888765 479999999975
No 68
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.74 E-value=7.1e-19 Score=126.81 Aligned_cols=108 Identities=13% Similarity=0.023 Sum_probs=65.7
Q ss_pred EEEEECCCCCCcchHHHHHHhhhhcceeeeccccchhh-Hhh--------HHHHHHHHHHHcCCCC-CCCCCCCCCCChH
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLED-LLT--------MEEAVHAKLRKFGLPG-HNHLTPIANLSGG 114 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG 114 (158)
+++|+||||||||||+++|++...-.+ .|+..+.... ... .....+.++..++... ....+++.+||||
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~-~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG 80 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA-IGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE-EEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC-CCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHH
Confidence 689999999999999999997653111 1111100000 000 0000000011122211 0122456789999
Q ss_pred HHHHHHHHHH-----Hhh--------------CCCHHHHHHHHHHHhhcCCeEEEEee
Q 044538 115 QKVRVMFTLV-----SMY--------------HLDTQSIVAVAVTLDEFAGGVVLVSH 153 (158)
Q Consensus 115 qkqrv~ia~~-----~l~--------------~lD~~~~~~l~~~l~~~~~tvi~vtH 153 (158)
||||++||++ ++. ++|+.....+.+.+++.+.|+|++||
T Consensus 81 ~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred HHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9999999986 433 58889999999999887777999996
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.73 E-value=1.1e-19 Score=134.04 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=65.4
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-----------------eeeeccccchhhHh-hHHHHHHH
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-----------------LRIGRHSRHLEDLL-TMEEAVHA 92 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-----------------~~~~~~~~~~~~~~-~~~~~~~~ 92 (158)
.+|+++ ++|++++|+||||||||||+++|++. ... ..+++.++...+.+ ........
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~ 88 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHD 88 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHH
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHH
Confidence 478885 89999999999999999999999976 321 11333333321111 10000000
Q ss_pred HHHHcCCCCCC-CCCCCCCCChHHHHHHHHHHHHhhC-----CCHH---HHHHHHHHHhhc--CCeEEEEeecCCCC
Q 044538 93 KLRKFGLPGHN-HLTPIANLSGGQKVRVMFTLVSMYH-----LDTQ---SIVAVAVTLDEF--AGGVVLVSHDSRLI 158 (158)
Q Consensus 93 ~l~~~~l~~~~-~~~~~~~LSgGqkqrv~ia~~~l~~-----lD~~---~~~~l~~~l~~~--~~tvi~vtHd~~~~ 158 (158)
.+. ...... ....... +.|||||++||++++.+ ||.. +...+.+.++++ +.||| +|||++++
T Consensus 89 ~~~--~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l~~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 89 ALR--DMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRLGFGSKMV-VTGDITQV 161 (208)
T ss_dssp HHT--TTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTBCTTCEEE-EEEC----
T ss_pred HHH--HhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHhcCCCEEE-EECCHHHH
Confidence 010 100000 0000111 33999999999887764 3321 566777777765 46888 99998753
No 70
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.70 E-value=1.9e-18 Score=136.44 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=86.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhccee-eeccccc---h-------h-
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLR-IGRHSRH---L-------E- 81 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~-~~~~~~~---~-------~- 81 (158)
+++..++ ++.|+.+ ..+++++ |+|.+|++++|+||||||||||+++|++....... +...... . .
T Consensus 45 ~i~~~~l-~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVI-DQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCC-CSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred Ceeeccc-ceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 5666666 8888633 3589999 99999999999999999999999999975432211 1100000 0 0
Q ss_pred ------------hHhhHHHHHHHH------HHHcCCCCC---CCCCCCCCCChHHHHHHHHHHH---HhhCCCHHHHHHH
Q 044538 82 ------------DLLTMEEAVHAK------LRKFGLPGH---NHLTPIANLSGGQKVRVMFTLV---SMYHLDTQSIVAV 137 (158)
Q Consensus 82 ------------~~~~~~~~~~~~------l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~---~l~~lD~~~~~~l 137 (158)
......+++... .+.+.-... .....+..||+|| ||+++|.. ...++|+.....+
T Consensus 122 ~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~lal~~p~~t~Gldp~~~~~l 200 (347)
T 2obl_A 122 STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLASGEPDVRGGFPPSVFSSL 200 (347)
T ss_dssp HHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHHTTCCCCBTTBCHHHHHHH
T ss_pred hhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHHcCCCCcccCCCHHHHHHH
Confidence 000011111111 111110000 0002457899999 89999610 0247999999999
Q ss_pred HHHHhhc-----CC-----eEEEEeecCC
Q 044538 138 AVTLDEF-----AG-----GVVLVSHDSR 156 (158)
Q Consensus 138 ~~~l~~~-----~~-----tvi~vtHd~~ 156 (158)
.+.+++. +. ||+++|||++
T Consensus 201 ~~ller~~~~~~GsiT~~~tVl~~thdl~ 229 (347)
T 2obl_A 201 PKLLERAGPAPKGSITAIYTVLLESDNVN 229 (347)
T ss_dssp HHHHTTCEECSSSEEEEEEEEECCSSCCC
T ss_pred HHHHHHHhCCCCCCeeeEEEEEEeCCCCC
Confidence 9998764 23 7999999986
No 71
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.70 E-value=1.8e-16 Score=123.68 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=43.2
Q ss_pred CCCCCCChHHHHHHHHHHHHh----h------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 106 TPIANLSGGQKVRVMFTLVSM----Y------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 106 ~~~~~LSgGqkqrv~ia~~~l----~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
.++.+||||||||++||++++ . +||+.....+.+.+++. +.++|+|||+.+
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~ 283 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI 283 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH
Confidence 456899999999999998764 2 59999999999998876 468999999964
No 72
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.70 E-value=5.1e-19 Score=131.16 Aligned_cols=36 Identities=19% Similarity=0.078 Sum_probs=24.7
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.|+|+||++++|++++|+||||||||||+++|++..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999999999999999999765
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.68 E-value=3e-19 Score=138.63 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=75.3
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeeccccc--hh-----h-Hh-
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRH--LE-----D-LL- 84 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~--~~-----~-~~- 84 (158)
++.+.++ ++.|+ .++|+++||+|++|++++|+||||||||||+++|++.....+ +++.++. +. + .+
T Consensus 101 ~i~~~~v-s~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I-~~~v~q~~~lf~~ti~~~ni~ 175 (305)
T 2v9p_A 101 FFNYQNI-ELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV-LSFANHKSHFWLASLADTRAA 175 (305)
T ss_dssp HHHHTTC-CHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE-ECGGGTTSGGGGGGGTTCSCE
T ss_pred eEEEEEE-EEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE-EEEecCccccccccHHHHhhc
Confidence 4666666 88886 358999999999999999999999999999999997652222 1222211 00 0 00
Q ss_pred ---hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------CCCHHHHHHHH
Q 044538 85 ---TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------HLDTQSIVAVA 138 (158)
Q Consensus 85 ---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------~lD~~~~~~l~ 138 (158)
...+.+.+.++.+ ++...+ ...|||||||| ||+++. +||+.+...+.
T Consensus 176 ~~~~~~~~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~ 233 (305)
T 2v9p_A 176 LVDDATHACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYL 233 (305)
T ss_dssp EEEEECHHHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGG
T ss_pred cCccccHHHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHH
Confidence 0012345556654 433222 57899999999 676553 68877766654
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.68 E-value=8e-18 Score=136.47 Aligned_cols=140 Identities=11% Similarity=0.089 Sum_probs=89.3
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc----------------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---------------------- 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---------------------- 70 (158)
+++...++ ++.|..+ ..+++++ |++.+|++++|+||||||||||+++|++.....
T Consensus 130 ~~l~~~~v-~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPI-EHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCC-CSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEecc-ceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 35666666 8888633 3589999 999999999999999999999999998643211
Q ss_pred ------eeeeccccc---hhhHhhHHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHHH---HhhCCCHHHHH
Q 044538 71 ------LRIGRHSRH---LEDLLTMEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTLV---SMYHLDTQSIV 135 (158)
Q Consensus 71 ------~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~---~l~~lD~~~~~ 135 (158)
..+++.++. ....++..+.+....+.+..... .....+..||+|| ||++||.. +..++|+....
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslAl~~p~~t~glD~~~~~ 285 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALAIGEPPATKGYPPSVFA 285 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHHTTCCCCSSSCCTTHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHHhCCCcccccCCHHHHH
Confidence 012222221 11222222322222222221110 0001246899999 99999711 12379999999
Q ss_pred HHHHHHhhcC------C------eEEEEeecCC
Q 044538 136 AVAVTLDEFA------G------GVVLVSHDSR 156 (158)
Q Consensus 136 ~l~~~l~~~~------~------tvi~vtHd~~ 156 (158)
.+.+.+.+.. . ||+++|||++
T Consensus 286 ~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~ 318 (438)
T 2dpy_A 286 KLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ 318 (438)
T ss_dssp HHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred HHHHHHHHHHhccCCCCcccceeEEEEeCCCcc
Confidence 9999887642 2 8999999985
No 75
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.66 E-value=6.6e-18 Score=146.89 Aligned_cols=122 Identities=18% Similarity=0.185 Sum_probs=74.1
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCC
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPI 108 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 108 (158)
..+++|+||++++|++++|+||||||||||+|++++..... ..| +.+..... .. .+..++..+++.+... ...
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~g~~vpa~~~~-i~---~~d~i~~~ig~~d~l~-~~~ 733 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QIGSYVPAEEAT-IG---IVDGIFTRMGAADNIY-KGR 733 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HHTCCBSSSEEE-EE---CCSEEEEEC-----------
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hcCccccchhhh-hh---HHHHHHHhCChHHHHH-HhH
Confidence 46889999999999999999999999999999987432100 000 00000000 00 0011233444444333 345
Q ss_pred CCCChHHHHHHHHHHHHh-----------hCCCHHHHHHHH-HHHh----hcCCeEEEEeecCCC
Q 044538 109 ANLSGGQKVRVMFTLVSM-----------YHLDTQSIVAVA-VTLD----EFAGGVVLVSHDSRL 157 (158)
Q Consensus 109 ~~LSgGqkqrv~ia~~~l-----------~~lD~~~~~~l~-~~l~----~~~~tvi~vtHd~~~ 157 (158)
+++|+||+|++.+++++. .++|+.....+. ..++ +.+.++|++|||+++
T Consensus 734 stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 734 STFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence 889999999999976632 279987766554 3332 246899999999764
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.63 E-value=1.6e-17 Score=133.61 Aligned_cols=123 Identities=17% Similarity=0.106 Sum_probs=83.4
Q ss_pred cceeeeeEEeeCCC--------------------EEEEECCCCCCcchHHHHHHhhhhc---ceee--------eccccc
Q 044538 31 IRLSNVDMGIDMGT--------------------CVAIVGPNDTGKSPLPNLLAVRRRQ---KLRI--------GRHSRH 79 (158)
Q Consensus 31 ~~l~~isl~i~~G~--------------------~~~liG~nGsGKSTLl~~i~~~~~~---~~~~--------~~~~~~ 79 (158)
.+++++||++++|+ +++|+||||||||||+|+|++.... ...+ ++.++.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence 47999999999999 9999999999999999999974211 1000 111111
Q ss_pred h-------hhH---hhHHHHHHHHHHHcCCCCCCCCCCCCCCChH--HHHHHHHHHHHhh--------------------
Q 044538 80 L-------EDL---LTMEEAVHAKLRKFGLPGHNHLTPIANLSGG--QKVRVMFTLVSMY-------------------- 127 (158)
Q Consensus 80 ~-------~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkqrv~ia~~~l~-------------------- 127 (158)
. .+. ......+.++++.+++.+.. ..+. ||+| |+||++||+++..
T Consensus 117 ~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~--~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEP 193 (413)
T 1tq4_A 117 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD--FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEA 193 (413)
T ss_dssp SSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS--EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHH
T ss_pred cccCCeeehHhhcccchHHHHHHHHHHcCCCccC--CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcc
Confidence 0 000 01123567889999986542 2233 9999 9999999988754
Q ss_pred --CCCHHHHHHHHHHHhhc------------CCeEEEEeecCC
Q 044538 128 --HLDTQSIVAVAVTLDEF------------AGGVVLVSHDSR 156 (158)
Q Consensus 128 --~lD~~~~~~l~~~l~~~------------~~tvi~vtHd~~ 156 (158)
+||+..+..+++.++++ ..+++++||+++
T Consensus 194 tsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~ 236 (413)
T 1tq4_A 194 DGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVC 236 (413)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCC
Confidence 46766666666555443 145888999875
No 77
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.62 E-value=2.9e-15 Score=117.69 Aligned_cols=51 Identities=25% Similarity=0.436 Sum_probs=39.4
Q ss_pred CCCCCCChHHHHHHHHHHH------Hhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 106 TPIANLSGGQKVRVMFTLV------SMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 106 ~~~~~LSgGqkqrv~ia~~------~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+++.+||||||||++||++ ++. +||+..+..+.+.++++ +.+||+||||.+
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~ 315 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 315 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH
Confidence 4678999999997665533 221 79999999999888664 358999999964
No 78
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.62 E-value=1.8e-18 Score=143.06 Aligned_cols=125 Identities=11% Similarity=0.107 Sum_probs=76.1
Q ss_pred cceeeeeE-EeeCCCEEEEECCCCCCcchHHHH--HHhhhh-cc--eeeeccccchhhHhh-------HHHHHHH-----
Q 044538 31 IRLSNVDM-GIDMGTCVAIVGPNDTGKSPLPNL--LAVRRR-QK--LRIGRHSRHLEDLLT-------MEEAVHA----- 92 (158)
Q Consensus 31 ~~l~~isl-~i~~G~~~~liG~nGsGKSTLl~~--i~~~~~-~~--~~~~~~~~~~~~~~~-------~~~~~~~----- 92 (158)
++|++++| .+++|++++|+||||||||||+++ +++... .. +.+..... ...... ..+....
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~~~l~ 104 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDEGKLF 104 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHTTSEE
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhccCcEE
Confidence 58999999 999999999999999999999999 455443 11 11111110 000000 0000000
Q ss_pred ------------HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh----hCCCHHHHHHHHHHHhh---cCCeEEEEee
Q 044538 93 ------------KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM----YHLDTQSIVAVAVTLDE---FAGGVVLVSH 153 (158)
Q Consensus 93 ------------~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l----~~lD~~~~~~l~~~l~~---~~~tvi~vtH 153 (158)
+++.+++.... ++.+.+|||||+|||.|+.... .++|+..+..+.+.+++ .+.|+|++||
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH 183 (525)
T 1tf7_A 105 ILDASPDPEGQEVVGGFDLSALI-ERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTE 183 (525)
T ss_dssp EEECCCCSSCCSCCSSHHHHHHH-HHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred EEecCcccchhhhhcccCHHHHH-HHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 00011111110 1234579999999998864432 25788888777776654 4689999999
Q ss_pred cCCC
Q 044538 154 DSRL 157 (158)
Q Consensus 154 d~~~ 157 (158)
+++.
T Consensus 184 ~~~~ 187 (525)
T 1tf7_A 184 RIEE 187 (525)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 9875
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.59 E-value=2.7e-15 Score=124.08 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=73.0
Q ss_pred eEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce--eeeccccchhhHhhHHHH-------HHHHHHHcCCCCCCCCCC
Q 044538 37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL--RIGRHSRHLEDLLTMEEA-------VHAKLRKFGLPGHNHLTP 107 (158)
Q Consensus 37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~~~~~~ 107 (158)
+..+++|++++|+||||||||||++.+++...... .+.+..+.....+ ..+ +.+ +..+|+..... .+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l--~~~~~~~g~~~~~-~~~~g~~~~~~-~~ 350 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQL--LRNAYSWGMDFEE-MERQNLLKIVC-AY 350 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHH--HHHHHTTSCCHHH-HHHTTSEEECC-CC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHH--HHHHHHcCCCHHH-HHhCCCEEEEE-ec
Confidence 55899999999999999999999999987543221 1122222211111 111 111 22334333333 35
Q ss_pred CCCCChHHHHHHHHHHHHhh-----------CCCHH-----HHHHHHHH---HhhcCCeEEEEeecC
Q 044538 108 IANLSGGQKVRVMFTLVSMY-----------HLDTQ-----SIVAVAVT---LDEFAGGVVLVSHDS 155 (158)
Q Consensus 108 ~~~LSgGqkqrv~ia~~~l~-----------~lD~~-----~~~~l~~~---l~~~~~tvi~vtHd~ 155 (158)
+.+|||||+||+++|+++.. +||.. .+..+.+. +++.+.|+|++|||.
T Consensus 351 p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 351 PESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 57899999999999877654 35555 55554444 455578999999997
No 80
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.58 E-value=4.7e-17 Score=119.36 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=24.7
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.++++| .++++|++++|+||||||||||+++|++..
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356777 799999999999999999999999999764
No 81
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.58 E-value=1.1e-16 Score=140.80 Aligned_cols=137 Identities=19% Similarity=0.173 Sum_probs=77.8
Q ss_pred chhhhhhe-----eeeEEcCCCCCcceeeeeEEeeC-------CCEEEEECCCCCCcchHHHHHHhhhhcceeee-cccc
Q 044538 12 SPMLQLIE-----VISFSYPNLQDIRLSNVDMGIDM-------GTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSR 78 (158)
Q Consensus 12 ~~~l~~~~-----~~~~~~~~~~~~~l~~isl~i~~-------G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~ 78 (158)
.+++.+.+ + .+.|.+. ..+++|++|++++ |++++|+||||||||||+|.+ +.......+| ++++
T Consensus 748 ~~~l~i~~~rHP~l-~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq 824 (1022)
T 2o8b_B 748 PPFLELKGSRHPCI-TKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPA 824 (1022)
T ss_dssp CCCEEEEEECCCC-------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEES
T ss_pred CceEEEEeccccEE-EEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEecc
Confidence 34666666 4 6667332 3589999999987 999999999999999999999 5433222233 3333
Q ss_pred chhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH-H---HHHHHHh
Q 044538 79 HLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI-V---AVAVTLD 142 (158)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~-~---~l~~~l~ 142 (158)
... .++..+ .++..+|+.+... ...+++|+++++ +++|++.+. ++|+... . .+++.+.
T Consensus 825 ~~~-~l~v~d---~I~~rig~~d~~~-~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~ 898 (1022)
T 2o8b_B 825 EVC-RLTPID---RVFTRLGASDRIM-SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELA 898 (1022)
T ss_dssp SEE-EECCCS---BEEEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CcC-CCCHHH---HHHHHcCCHHHHh-hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHH
Confidence 211 011100 1123445544332 344678888776 777666543 6887653 3 3444444
Q ss_pred hc-CCeEEEEeecCCC
Q 044538 143 EF-AGGVVLVSHDSRL 157 (158)
Q Consensus 143 ~~-~~tvi~vtHd~~~ 157 (158)
+. +.++|++|||.++
T Consensus 899 ~~~g~~vl~~TH~~el 914 (1022)
T 2o8b_B 899 ETIKCRTLFSTHYHSL 914 (1022)
T ss_dssp HTSCCEEEEECCCHHH
T ss_pred hcCCCEEEEEeCCHHH
Confidence 43 6799999999653
No 82
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.57 E-value=3.6e-17 Score=122.95 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=60.8
Q ss_pred CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc------eeeeccccc-hhhHhhH---------------
Q 044538 29 QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK------LRIGRHSRH-LEDLLTM--------------- 86 (158)
Q Consensus 29 ~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~------~~~~~~~~~-~~~~~~~--------------- 86 (158)
...+|+++||++++|+++||+||||||||||+++|++..... ..+++.++. +...++.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~ 90 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDH 90 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTS
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCC
Confidence 446899999999999999999999999999999998743211 112222211 0000000
Q ss_pred -----HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------CCCHHHHHHHHHHHhhcCCeEEEEee
Q 044538 87 -----EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------HLDTQSIVAVAVTLDEFAGGVVLVSH 153 (158)
Q Consensus 87 -----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------~lD~~~~~~l~~~l~~~~~tvi~vtH 153 (158)
.+.+.+.++.+ ..... .++..||+||+||+++ ++++. ++|......+.+ ..+.+|+++||
T Consensus 91 ~~~~~~~~~~~~L~~l--~~~~~-~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~---~~~~~i~v~th 163 (245)
T 2jeo_A 91 PDAFDNDLMHRTLKNI--VEGKT-VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRD---MFHLRLFVDTD 163 (245)
T ss_dssp GGGBCHHHHHHHHHHH--HTTCC-EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHT---TCSEEEEEECC
T ss_pred cccccHHHHHHHHHHH--HCCCC-eecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHH---hcCeEEEEECC
Confidence 12233444433 12222 3567899999999977 33222 344332222222 13568999999
Q ss_pred c
Q 044538 154 D 154 (158)
Q Consensus 154 d 154 (158)
+
T Consensus 164 ~ 164 (245)
T 2jeo_A 164 S 164 (245)
T ss_dssp H
T ss_pred H
Confidence 6
No 83
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.56 E-value=3.6e-16 Score=136.31 Aligned_cols=119 Identities=16% Similarity=0.091 Sum_probs=68.6
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCC
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPI 108 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 108 (158)
..+++|++|++.+|++++|+|||||||||++|+++...... ..| +.+..... . ..+..++..+|+.+.. .
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~a-q~G~~vpa~~~~-~---~~~d~i~~~ig~~d~l----~ 719 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMA-QIGCFVPCESAE-V---SIVDCILARVGAGDSQ----L 719 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHH-HHTCCBSEEEEE-E---ECCSEEEEECC----------
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHH-hcCCcccccccc-c---hHHHHHHHhcCchhhH----H
Confidence 35789999999999999999999999999999985321000 000 11100000 0 0011233444544322 2
Q ss_pred CCCChHHHHHHHHHHHH--hh------------CCCHHHHHHH----HHHHhh-cCCeEEEEeecCCC
Q 044538 109 ANLSGGQKVRVMFTLVS--MY------------HLDTQSIVAV----AVTLDE-FAGGVVLVSHDSRL 157 (158)
Q Consensus 109 ~~LSgGqkqrv~ia~~~--l~------------~lD~~~~~~l----~~~l~~-~~~tvi~vtHd~~~ 157 (158)
..+|+|++++..+|+++ +. ++|+.....+ ++.+.+ .+.++|++|||.++
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el 787 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL 787 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH
Confidence 45777777777776554 22 6898766554 344443 46899999999764
No 84
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.54 E-value=7.4e-16 Score=119.48 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=31.2
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++++||++++|++++|+|||||||||+++.|++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999864
No 85
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.53 E-value=1.1e-15 Score=119.83 Aligned_cols=108 Identities=15% Similarity=0.093 Sum_probs=67.2
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeeccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANL 111 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 111 (158)
+++++||.+++|++++|+||||||||||+++|++........-..... +. +.+... ...+.-+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~--~e-------------~~~~~~--~~~i~~~ 222 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT--EE-------------IVFKHH--KNYTQLF 222 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS--CC-------------CCCSSC--SSEEEEE
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe--ec-------------cccccc--hhEEEEE
Confidence 688999999999999999999999999999999765432111110000 00 011100 0111111
Q ss_pred C-hHHHHHHHHHHHHhhCCC-----H---HHHHHHHHHHhhcCCeEEEEeecCC
Q 044538 112 S-GGQKVRVMFTLVSMYHLD-----T---QSIVAVAVTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 112 S-gGqkqrv~ia~~~l~~lD-----~---~~~~~l~~~l~~~~~tvi~vtHd~~ 156 (158)
+ |||+||++||+++..++| . ....++++.+..-+.|+|+++|+.+
T Consensus 223 ~ggg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 223 FGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGS 276 (330)
T ss_dssp CBTTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSS
T ss_pred eCCChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccH
Confidence 2 899999999988876544 1 1222333444332347999999875
No 86
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.52 E-value=7.1e-15 Score=126.09 Aligned_cols=106 Identities=22% Similarity=0.174 Sum_probs=72.0
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--cc--------eeeeccccchhhHhhHHHHHHHHHHHcCC
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--QK--------LRIGRHSRHLEDLLTMEEAVHAKLRKFGL 99 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 99 (158)
..+++|+||+ |++++|+||||||||||+|++++... .. ..+++..+ ++..++.
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~--------------i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG--------------IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE--------------EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH--------------hhccCCH
Confidence 4678999999 99999999999999999999987532 11 11222111 1112222
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHH--hh---------------CCCHHHH-HHHHHHHhhcCCeEEEEeecCC
Q 044538 100 PGHNHLTPIANLSGGQKVRVMFTLVS--MY---------------HLDTQSI-VAVAVTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 100 ~~~~~~~~~~~LSgGqkqrv~ia~~~--l~---------------~lD~~~~-~~l~~~l~~~~~tvi~vtHd~~ 156 (158)
.+. ....+|+|+++++.+|+++ +. ++|..+. ..+.+.+.+.+.++|++|||.+
T Consensus 629 ~d~----l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 629 SDD----LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 699 (765)
T ss_dssp ----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred HHH----HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 221 1235899999999998765 22 3576665 4688888777789999999864
No 87
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.48 E-value=6.7e-15 Score=116.49 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=30.5
Q ss_pred eeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++||++++|++++|+||||||||||++.|++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 468999999999999999999999999999864
No 88
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.46 E-value=9.6e-16 Score=119.35 Aligned_cols=86 Identities=10% Similarity=-0.059 Sum_probs=57.8
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHHhhhhcc---eeeeccccch--hhH----------------hhHHHHHHHHHHHcC
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LRIGRHSRHL--EDL----------------LTMEEAVHAKLRKFG 98 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~~~~~~~~~--~~~----------------~~~~~~~~~~l~~~~ 98 (158)
+++|+++||+||||||||||+++|++..... ..+++.++.. .+. ....+.+.+.++.++
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999764321 2233332221 000 001245667777777
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538 99 LPGHNHLTPIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 99 l~~~~~~~~~~~LSgGqkqrv~ia~~~l~ 127 (158)
..... .++.+|||||+||+++|++++.
T Consensus 167 -~~~~~-~~~~~lS~G~~qRv~~a~al~~ 193 (312)
T 3aez_A 167 -SGSDY-ACAPVYSHLHYDIIPGAEQVVR 193 (312)
T ss_dssp -TTCSC-EEEEEEETTTTEEEEEEEEEEC
T ss_pred -CCccc-CCcccCChhhhhhhhhHHHhcc
Confidence 43332 3457999999999999766554
No 89
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.44 E-value=1.1e-15 Score=116.88 Aligned_cols=105 Identities=18% Similarity=0.110 Sum_probs=61.1
Q ss_pred EEEEECCCCCCcchHHHHHHhhhhc-----------------ceeeeccccchh--hHh---------------hHHHHH
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVRRRQ-----------------KLRIGRHSRHLE--DLL---------------TMEEAV 90 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~~~~-----------------~~~~~~~~~~~~--~~~---------------~~~~~~ 90 (158)
.++|+||||||||||+++|++.... ...+++.++... ..+ ..++.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4799999999999999999864311 012333322110 000 001223
Q ss_pred HHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------CCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538 91 HAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------HLDTQSIVAVAVTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 91 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~ 156 (158)
.+++. ... .++.+.+|||||+||+++|++.+. ++|+.. ..+++.+.+. .++|+|.|..+
T Consensus 84 ~~~~~----~~~-~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 84 EKYIN----EQY-EKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHH----HHH-HHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHTT-SEEEEEETTGG
T ss_pred HHHHH----HHH-HhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHhc-CcEEEEEeccc
Confidence 33322 111 123457899999999999876432 577766 4455566555 78888877543
No 90
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.44 E-value=2e-14 Score=123.87 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=65.7
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------ceeeeccccchhhHhhHHHHHHHHHHHcCC
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------KLRIGRHSRHLEDLLTMEEAVHAKLRKFGL 99 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 99 (158)
..+++|++|+ ++|++++|+||||||||||+|++++.... ...++...+ ++..++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~--------------i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR--------------IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE--------------EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH--------------HHhhCCH
Confidence 3579999999 99999999999999999999999864311 011222111 1112222
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHhh-----------CCC---HHHH-HHHHHHHhh-cCCeEEEEeecCCC
Q 044538 100 PGHNHLTPIANLSGGQKVRVMFTLVSMY-----------HLD---TQSI-VAVAVTLDE-FAGGVVLVSHDSRL 157 (158)
Q Consensus 100 ~~~~~~~~~~~LSgGqkqrv~ia~~~l~-----------~lD---~~~~-~~l~~~l~~-~~~tvi~vtHd~~~ 157 (158)
.+... ...+.+|+++++...++..+.. ++| .... ..+++.+.+ .+.++|++|||.++
T Consensus 660 ~d~l~-~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el 732 (800)
T 1wb9_A 660 ADDLA-SGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 732 (800)
T ss_dssp -----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHHH-hhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHH
Confidence 22211 2335688888776555332111 344 3333 455666655 47899999999764
No 91
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.42 E-value=4.2e-13 Score=106.22 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=41.9
Q ss_pred CCC-CCChHHHHHHHHHHHHh---------h------------CCCHHHHHHHHHHHhhcCCeEEEEeec
Q 044538 107 PIA-NLSGGQKVRVMFTLVSM---------Y------------HLDTQSIVAVAVTLDEFAGGVVLVSHD 154 (158)
Q Consensus 107 ~~~-~LSgGqkqrv~ia~~~l---------~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd 154 (158)
++. .||||||||++||++++ . +||+..+..+++.+.+...|+|++||+
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~ 330 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL 330 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec
Confidence 445 79999999999998877 2 699999999999998877899999994
No 92
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.41 E-value=3e-12 Score=97.57 Aligned_cols=117 Identities=15% Similarity=0.058 Sum_probs=68.0
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------ceeeeccccc-hhhHh--hH--------HHHHHHHHHH
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------KLRIGRHSRH-LEDLL--TM--------EEAVHAKLRK 96 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------~~~~~~~~~~-~~~~~--~~--------~~~~~~~l~~ 96 (158)
.+++|++++|+||||||||||++.+++.... ...+.+.... ....+ .. ......+++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 4789999999999999999999998853321 1112221110 00110 00 1223345677
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHH------------HhhCCCHH---HHHHHHHHH----hhcCCeEEEEeecCCC
Q 044538 97 FGLPGHNHLTPIANLSGGQKVRVMFTLV------------SMYHLDTQ---SIVAVAVTL----DEFAGGVVLVSHDSRL 157 (158)
Q Consensus 97 ~~l~~~~~~~~~~~LSgGqkqrv~ia~~------------~l~~lD~~---~~~~l~~~l----~~~~~tvi~vtHd~~~ 157 (158)
+.+.+... +++..||+||+|++.- .+ .+..+|.. ....+++.| ++.+.|||+++|+...
T Consensus 106 l~l~~~~~-~~~~~ls~g~~~~i~~-l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 106 LLIQPLIG-SLPNIMAPEWFDGLKR-AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp EEECCCTT-SCCCTTSHHHHHHHHH-HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred eEEeecCC-CCcccCCHHHHHHHHH-hcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 77765443 4678999999988742 11 00145642 234444444 3457899999998753
No 93
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.41 E-value=6.7e-13 Score=101.90 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=34.2
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+|+++++.+++|++++|+||||||||||++.+++..
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999999999999999998654
No 94
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.38 E-value=2.4e-13 Score=97.69 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=65.6
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-ee---------------eeccccchhhHhhHHHHHHHHH---HHcC-
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LR---------------IGRHSRHLEDLLTMEEAVHAKL---RKFG- 98 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~l---~~~~- 98 (158)
.+++|++++|+||||||||||+++|++..... +. .++.++......+..+.+.... ..-+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 84 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY 84 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCC
Confidence 47899999999999999999999998642110 01 1122221111112222221111 1111
Q ss_pred ---CCC---------CCC-CCCCCCCChHHHHHHHHHHHHhhC----CCHHHHHHHHHHHhhcC--CeEEEEee
Q 044538 99 ---LPG---------HNH-LTPIANLSGGQKVRVMFTLVSMYH----LDTQSIVAVAVTLDEFA--GGVVLVSH 153 (158)
Q Consensus 99 ---l~~---------~~~-~~~~~~LSgGqkqrv~ia~~~l~~----lD~~~~~~l~~~l~~~~--~tvi~vtH 153 (158)
++. ... ..++..+|+|++|+++++|++..+ +|+.....+.+.+..+. ..+++.|+
T Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 85 FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVS 158 (191)
T ss_dssp EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCCGGGGGGEEECT
T ss_pred eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCcccccEEECC
Confidence 010 000 124467999999999998887663 47888888888776543 23445454
No 95
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.37 E-value=2.1e-15 Score=110.33 Aligned_cols=112 Identities=12% Similarity=0.037 Sum_probs=70.0
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeeccccc--hh--------h---------HhhHHHHHHHHHHHcCCC
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRH--LE--------D---------LLTMEEAVHAKLRKFGLP 100 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~--~~--------~---------~~~~~~~~~~~l~~~~l~ 100 (158)
.++|++++|+||||||||||+++|++..... +++.++. +. . .....+.+.+.++.+++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~--i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGER--VALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRG 80 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGG--EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCC--eEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC
Confidence 5789999999999999999999999864321 1211111 00 0 001124566777888776
Q ss_pred CCCCCCCCCCCChHHH----HHHHHHHHHhh------------C-------CCHHHHHHHHHHHhh----cCCeEEEEee
Q 044538 101 GHNHLTPIANLSGGQK----VRVMFTLVSMY------------H-------LDTQSIVAVAVTLDE----FAGGVVLVSH 153 (158)
Q Consensus 101 ~~~~~~~~~~LSgGqk----qrv~ia~~~l~------------~-------lD~~~~~~l~~~l~~----~~~tvi~vtH 153 (158)
.... +|+.++|+||+ ||+++|++++. + ||+.....+.+.+.+ .+.|++.++|
T Consensus 81 ~~~~-~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 81 LPVE-MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CCEE-ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCcC-CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6544 46789999974 67776544322 2 565555556665544 2568888888
Q ss_pred c
Q 044538 154 D 154 (158)
Q Consensus 154 d 154 (158)
+
T Consensus 160 ~ 160 (211)
T 3asz_A 160 Q 160 (211)
T ss_dssp H
T ss_pred H
Confidence 6
No 96
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.35 E-value=3.6e-12 Score=98.79 Aligned_cols=114 Identities=19% Similarity=0.103 Sum_probs=63.0
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------------eeeccccch--hhHhhHHHHHHHH
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL-----------------------RIGRHSRHL--EDLLTMEEAVHAK 93 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~-----------------------~~~~~~~~~--~~~~~~~~~~~~~ 93 (158)
+|++++|+||||||||||++.|++.... .. .+++.++.. .+..+..+.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999864321 11 112222211 1111222222221
Q ss_pred HH-Hc-----CCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------CCCHHHHHHHHHHHh----hcCCeEEEEeecCC
Q 044538 94 LR-KF-----GLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSR 156 (158)
Q Consensus 94 l~-~~-----~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~ 156 (158)
.. .. +.....+ .....++..++||++||+++.. .||+.+...+++.++ ..+.|+|++||+.+
T Consensus 181 ~~~~~d~~llDt~G~~~-~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLH-TKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHTCSEEEECCCCCCT-TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HhCCCCEEEecCCCCCC-chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 11 11 1111111 1112355666999999988665 466554444444433 34679999999854
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.35 E-value=5.6e-12 Score=93.75 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=25.3
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
.|++|++++|+||||||||||+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 78999999999999999999999998
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.35 E-value=5.1e-13 Score=101.52 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=64.6
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--eeeeccccchhhHhhHHHHHHHHH--HHcCCCCCCCCC
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--LRIGRHSRHLEDLLTMEEAVHAKL--RKFGLPGHNHLT 106 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l--~~~~l~~~~~~~ 106 (158)
++|+++| +++|++++|+||||||||||++++++..... ..+-........... .. ..+. ..++++.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~--~~-~~~v~q~~~gl~~----- 84 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK--HK-KSIVNQREVGEDT----- 84 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC--CS-SSEEEEEEBTTTB-----
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecC--Cc-ceeeeHHHhCCCH-----
Confidence 3789999 9999999999999999999999999754321 111111000000000 00 0000 0122210
Q ss_pred CCCCCChHHHHHHHHHHHHhhCC---------CHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538 107 PIANLSGGQKVRVMFTLVSMYHL---------DTQSIVAVAVTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 107 ~~~~LSgGqkqrv~ia~~~l~~l---------D~~~~~~l~~~l~~~~~tvi~vtHd~~ 156 (158)
..| |++||+++..++ |+++...+++.. +.+.+|+++||+.+
T Consensus 85 --~~l------~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~-~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 85 --KSF------ADALRAALREDPDVIFVGEMRDLETVETALRAA-ETGHLVFGTLHTNT 134 (261)
T ss_dssp --SCH------HHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH-HTTCEEEEEECCSS
T ss_pred --HHH------HHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH-ccCCEEEEEeCcch
Confidence 122 899988877643 777776666654 34789999999965
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.30 E-value=5.4e-12 Score=92.74 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=26.4
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-+++|++++|+||||||||||++++++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999999999874
No 100
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.30 E-value=2.7e-13 Score=95.75 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=37.6
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
++.|+. ..+++++||++++|++++|+||||||||||+++|++..
T Consensus 14 ~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 14 MLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445542 35789999999999999999999999999999999754
No 101
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.29 E-value=6.2e-13 Score=96.57 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=33.6
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++++.++ ++.|+. .++++ |++.+|..++|+|+||||||||++.+++.
T Consensus 3 ~l~~~~~-~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 3 NLNYQQT-HFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp ---------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred chhhhhh-hheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4556565 888862 46777 99999999999999999999999988753
No 102
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.27 E-value=1.9e-12 Score=95.93 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=58.4
Q ss_pred eeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-cee--eec---cccc----hhhH-hhHHHHHHHHHHHcCCCCCC
Q 044538 35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-KLR--IGR---HSRH----LEDL-LTMEEAVHAKLRKFGLPGHN 103 (158)
Q Consensus 35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-~~~--~~~---~~~~----~~~~-~~~~~~~~~~l~~~~l~~~~ 103 (158)
.-.-..++|++++|+||||||||||+++|++.... ... +.. .+.. .... ....+........-.+....
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 33557899999999999999999999999986542 111 110 0000 0000 00011111111110000000
Q ss_pred CCCCCCCCChHHHHHHHHHH----HHhhCCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538 104 HLTPIANLSGGQKVRVMFTL----VSMYHLDTQSIVAVAVTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 104 ~~~~~~~LSgGqkqrv~ia~----~~l~~lD~~~~~~l~~~l~~~~~tvi~vtHd~~ 156 (158)
. ....+.|-.++++.=+. .++.++|+.+...+.+.+.+ +.+|+++|||++
T Consensus 88 ~--~~~~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~-~~tI~i~th~~~ 141 (219)
T 1s96_A 88 E--VFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPH-ARSIFILPPSKI 141 (219)
T ss_dssp E--ETTEEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTT-CEEEEEECSSHH
T ss_pred H--HHhccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccC-CEEEEEECCCHH
Confidence 0 00111121233322111 12347999999999999873 679999999965
No 103
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.26 E-value=2.5e-12 Score=101.64 Aligned_cols=91 Identities=16% Similarity=0.104 Sum_probs=60.0
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-cc---e--------------eeeccccc--hhhH--------
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-QK---L--------------RIGRHSRH--LEDL-------- 83 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-~~---~--------------~~~~~~~~--~~~~-------- 83 (158)
-++++++. .+|++++|+||||||||||+++|++... .. + .+++.++. +.+.
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 46777775 4799999999999999999999987443 11 0 12222221 0110
Q ss_pred --hh---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538 84 --LT---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS 125 (158)
Q Consensus 84 --~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~ 125 (158)
.. ..+.+.++++.+++....+ .++.+|| ||+||++||++.
T Consensus 284 ~~l~~~e~~~~~~e~l~~~gl~~f~~-~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 284 WHLEPEQITQGFVEFHDYLGHCKYRD-CKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCCHHHHHHTSGGGGGGTTCSSSTT-CCSSSCT-TCHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhcC-CCcccCC-HHHHHHHHHhcC
Confidence 01 1233456778888876655 4568999 999999997654
No 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.22 E-value=3.4e-14 Score=109.98 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=21.7
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++.|+. +.++++++|+| +|+||||||||||++.|.+.
T Consensus 5 ~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 5 PNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ---------------CEEE------EEEEETTSSHHHHHHHHHC-
T ss_pred cceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCC
Confidence 666654 35899999998 99999999999999998753
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.20 E-value=1.1e-10 Score=85.51 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=67.9
Q ss_pred cceeeeeE-EeeCCCEEEEECCCCCCcchHHHHHHhhhhc-ceeeeccccchhhHhhHHHHHHHHHHHcCCCCCCC----
Q 044538 31 IRLSNVDM-GIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-KLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNH---- 104 (158)
Q Consensus 31 ~~l~~isl-~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 104 (158)
+.|+++.. .+++|++++|+||||||||||++.+++.... ...+.+..... . .+.+...+..++......
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~ 84 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE----S-RDSIIRQAKQFNWDFEEYIEKK 84 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS----C-HHHHHHHHHHTTCCCGGGBTTT
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc----C-HHHHHHHHHHhcchHHHHhhCC
Confidence 36888887 8999999999999999999999999854321 11111111110 0 011112222333321100
Q ss_pred -------------CCCCCCCChHHHHHHHHHHHHhh--------------CC--CHHHHHHHHHHHh----hcCCeEEEE
Q 044538 105 -------------LTPIANLSGGQKVRVMFTLVSMY--------------HL--DTQSIVAVAVTLD----EFAGGVVLV 151 (158)
Q Consensus 105 -------------~~~~~~LSgGqkqrv~ia~~~l~--------------~l--D~~~~~~l~~~l~----~~~~tvi~v 151 (158)
.......|.++.++...+.+... .+ |+.....+++.++ +.+.|||++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~ 164 (235)
T 2w0m_A 85 LIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYAT 164 (235)
T ss_dssp EEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 00113458899887766433211 13 7666666665554 346799999
Q ss_pred eecC
Q 044538 152 SHDS 155 (158)
Q Consensus 152 tHd~ 155 (158)
||+.
T Consensus 165 ~h~~ 168 (235)
T 2w0m_A 165 SQYA 168 (235)
T ss_dssp EC--
T ss_pred eccC
Confidence 9997
No 106
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.19 E-value=1.5e-12 Score=104.81 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=31.9
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-++++|+++.|+.++|+|+||||||||++.+++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999999999999999864
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.18 E-value=5.8e-13 Score=96.68 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCcchHHHHHHhhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
|++++|+||||||||||++++++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999999754
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.12 E-value=3.3e-11 Score=105.03 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=53.0
Q ss_pred HHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhc---CCeEEEEeec
Q 044538 92 AKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEF---AGGVVLVSHD 154 (158)
Q Consensus 92 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd 154 (158)
+.+..+|+.....++++.+|||||+|||+||+++.. +||+....++++.++++ +.|||+||||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456678887554446789999999999999998763 68999988888888765 4699999999
Q ss_pred CCC
Q 044538 155 SRL 157 (158)
Q Consensus 155 ~~~ 157 (158)
+++
T Consensus 526 ~~~ 528 (916)
T 3pih_A 526 EEV 528 (916)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 109
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.12 E-value=2.1e-11 Score=90.36 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=22.8
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHH-hhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA-VRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~-~~~ 67 (158)
+..+++||++++|++++|+||||||||||+++|+ +..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3578999999999999999999999999999998 653
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.11 E-value=1.6e-10 Score=91.33 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=34.9
Q ss_pred eEEcCCCCCcceeeeeE-------EeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 22 SFSYPNLQDIRLSNVDM-------GIDMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl-------~i~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
+++|.....+.|+++.+ ...+|++++|+||||||||||++++++...
T Consensus 95 ~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 95 VFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 44443333345666665 678899999999999999999999987543
No 111
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.09 E-value=1.1e-10 Score=81.49 Aligned_cols=51 Identities=27% Similarity=0.455 Sum_probs=41.7
Q ss_pred CCCCCCChHHHHHHHHH------HHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 106 TPIANLSGGQKVRVMFT------LVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 106 ~~~~~LSgGqkqrv~ia------~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+++.+||||||||++|| ++++. +||+.....+.+.+.++ +.|||+||||.+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 124 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence 46789999999999886 34332 69999999999988765 469999999974
No 112
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.05 E-value=1.2e-10 Score=101.62 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=52.2
Q ss_pred HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhh---cCCeEEEEeecC
Q 044538 93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDE---FAGGVVLVSHDS 155 (158)
Q Consensus 93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~---~~~tvi~vtHd~ 155 (158)
.+..+|+.....++++.+|||||+|||+||+++.. +||+....++++.|++ .+.|||+||||+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 47889997654457789999999999999988653 5888888888877654 467999999997
Q ss_pred CC
Q 044538 156 RL 157 (158)
Q Consensus 156 ~~ 157 (158)
++
T Consensus 567 ~~ 568 (972)
T 2r6f_A 567 DT 568 (972)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 113
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.05 E-value=7.7e-11 Score=85.25 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=24.8
Q ss_pred eEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
|+++++|++++|+||||||||||+++|++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 578889999999999999999999999875
No 114
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=3.2e-11 Score=97.28 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=34.7
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCE--EEEECCCCCCcchHHHHHHhh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTC--VAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~--~~liG~nGsGKSTLl~~i~~~ 66 (158)
++.|++ .+ ++++||++++|++ ++|+||||||||||+++|++.
T Consensus 22 ~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 22 HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 566654 34 9999999999999 999999999999999999864
No 115
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.04 E-value=1.3e-10 Score=95.02 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=32.2
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+|+++||+|++ ++++|+||||||||||+++|++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence 369999999999 9999999999999999999985
No 116
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.02 E-value=1.9e-10 Score=100.60 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=52.2
Q ss_pred HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhh---cCCeEEEEeecC
Q 044538 93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDE---FAGGVVLVSHDS 155 (158)
Q Consensus 93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~---~~~tvi~vtHd~ 155 (158)
.+..+|+.....++++.+|||||+|||+||+++.. +||+....++++.|++ .+.|||+||||+
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 47788987543456789999999999999988653 6899998888877654 468999999997
Q ss_pred CC
Q 044538 156 RL 157 (158)
Q Consensus 156 ~~ 157 (158)
++
T Consensus 584 ~~ 585 (993)
T 2ygr_A 584 DT 585 (993)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 117
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.01 E-value=7.3e-10 Score=80.74 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.0
Q ss_pred ceeeeeE-EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 32 RLSNVDM-GIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 32 ~l~~isl-~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.|+++.. -+++|++++|+||||||||||++.+++
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4666655 689999999999999999999999988
No 118
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.00 E-value=2.8e-10 Score=98.47 Aligned_cols=64 Identities=20% Similarity=0.172 Sum_probs=51.4
Q ss_pred HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHh---hcCCeEEEEeecC
Q 044538 93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLD---EFAGGVVLVSHDS 155 (158)
Q Consensus 93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~---~~~~tvi~vtHd~ 155 (158)
.+..+|+.....++++.+|||||+|||+||+++.. +||+....++++.++ +.+.|||+||||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 57889998653457789999999999999988654 688888877777654 4568999999997
Q ss_pred C
Q 044538 156 R 156 (158)
Q Consensus 156 ~ 156 (158)
+
T Consensus 442 ~ 442 (842)
T 2vf7_A 442 D 442 (842)
T ss_dssp H
T ss_pred H
Confidence 5
No 119
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.96 E-value=2.6e-10 Score=89.88 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=31.9
Q ss_pred ceeee-eEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 32 RLSNV-DMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 32 ~l~~i-sl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.|+++ ++.+++|++++|+||||||||||++.+++..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46665 7899999999999999999999999998764
No 120
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.95 E-value=4.5e-11 Score=90.23 Aligned_cols=52 Identities=15% Similarity=0.285 Sum_probs=34.0
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeC---CCEEEEECCCCCCcchHHHHHHh
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDM---GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~---G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++.+.++++++|.. ...+|+++||+|.+ |++++|+|++||||||+.++++.
T Consensus 16 ~~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 16 ALLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred CceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 456655433777732 34689999999999 99999999999999999999985
No 121
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.92 E-value=2.3e-11 Score=95.06 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=35.8
Q ss_pred eEEcCCCCCcceeeeeEEeeCC-------CEEEEECCCCCCcchHHHHHHhhh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMG-------TCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G-------~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+..|+. ..+++++++.+.+| +.++|+||||+|||||++++++..
T Consensus 25 ~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 444443 34788999999877 899999999999999999998653
No 122
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.89 E-value=3.9e-11 Score=94.94 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=32.4
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
++++||.+++|++++|+||||||||||+++|++..
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 38999999999999999999999999999998643
No 123
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=7.7e-10 Score=80.15 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=23.5
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
..+++|+||++.+|++++|+|++||||||+.+.++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999999999999999853
No 124
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.86 E-value=3e-10 Score=95.49 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=28.4
Q ss_pred hhhheeeeEEcCCCCCcceeee----------eEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 15 LQLIEVISFSYPNLQDIRLSNV----------DMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~i----------sl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+.+.++ +..|+....++++.+ +++++. ++|+||||||||||+++|+|..
T Consensus 11 i~~~~l-~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 11 VAENNL-CSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC
T ss_pred hhhhhh-hHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCC
Confidence 444444 777754322333333 466664 8999999999999999999753
No 125
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.86 E-value=6.6e-11 Score=91.66 Aligned_cols=49 Identities=24% Similarity=0.199 Sum_probs=40.1
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEe-------------------eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGI-------------------DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i-------------------~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
++.+.++ ++.|. ++++++++.+ .+|+++||+||||||||||+++|++..
T Consensus 37 ~i~~~~v-~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 37 DLSLEEV-AEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp TCCHHHH-HHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccchHhH-HHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555 66662 4789999988 999999999999999999999998754
No 126
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.84 E-value=6.9e-09 Score=74.11 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=42.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhcC--CeEEEEeecC
Q 044538 106 TPIANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDS 155 (158)
Q Consensus 106 ~~~~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~ 155 (158)
+++..||||||||++||++++. +||+.+...+.+.+++.. .++|+|||+.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~ 127 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRD 127 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 4568999999999999988752 699999999999998764 5899999984
No 127
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.82 E-value=3.5e-08 Score=79.06 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=24.0
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
-|++|++++|+||||||||||++.++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 58999999999999999999999665
No 128
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.82 E-value=1.7e-09 Score=76.86 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=28.8
Q ss_pred eeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++++++.+| +++|+||||||||||+++|..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 6889999999 999999999999999999974
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.82 E-value=1.2e-09 Score=89.58 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=31.9
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
-+++||++.+|++++|+|+||||||||++.|++..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 36899999999999999999999999999998643
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.80 E-value=6.6e-10 Score=87.15 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=39.3
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++..++ ++.|.. ..+++++||++.+|++++|+||||||||||++.+++.
T Consensus 30 ie~~~~-~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 30 AESRRA-DHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HTCSSH-HHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HeeCCc-ccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 333333 555643 2478999999999999999999999999999999853
No 131
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.80 E-value=3.9e-09 Score=81.79 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=54.2
Q ss_pred eeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-ceeeeccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCCh
Q 044538 35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-KLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSG 113 (158)
Q Consensus 35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 113 (158)
+++++..+|++++|+|||||||||++..+++.... ...+.....+.... ...+.+..+.+.++++. +...|+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~-~a~eqL~~~~~~~gl~~------~~~~s~ 168 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA-AAIEQLKIWGERVGATV------ISHSEG 168 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH-HHHHHHHHHHHHHTCEE------ECCSTT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH-HHHHHHHHHHHHcCCcE------EecCCc
Confidence 45677889999999999999999999999865432 11222211111111 11234455666777642 235789
Q ss_pred HHHHHH---HHHHHHhh
Q 044538 114 GQKVRV---MFTLVSMY 127 (158)
Q Consensus 114 Gqkqrv---~ia~~~l~ 127 (158)
|+.+++ +++++...
T Consensus 169 ~~~~~v~~~al~~a~~~ 185 (306)
T 1vma_A 169 ADPAAVAFDAVAHALAR 185 (306)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 999999 66555443
No 132
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.79 E-value=1.8e-09 Score=78.32 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
++|++++|+||||||||||+++|++..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999998753
No 133
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.77 E-value=3e-09 Score=77.60 Aligned_cols=29 Identities=34% Similarity=0.324 Sum_probs=26.3
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
.++|++++|+||||||||||+++|++...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999999997654
No 134
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.74 E-value=4.1e-09 Score=76.10 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=25.1
Q ss_pred EEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+++++|++++|+|||||||||++++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999999998654
No 135
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.70 E-value=5.5e-09 Score=74.88 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCcchHHHHHHhhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
|++++|+||||||||||+++|++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6789999999999999999998654
No 136
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.69 E-value=2.4e-09 Score=84.52 Aligned_cols=36 Identities=31% Similarity=0.264 Sum_probs=32.4
Q ss_pred eeeeeEEeeC--CCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 33 LSNVDMGIDM--GTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 33 l~~isl~i~~--G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
.+.|+++|.+ |+.++|+||||||||||+++|++...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4569999999 99999999999999999999997543
No 137
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.69 E-value=5.9e-09 Score=83.97 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=33.9
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.++.+.++ ++.|+. ..+++++||+| +|+||||||||||++++++..
T Consensus 10 ~~l~~~~l-~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 10 GYVGFANL-PNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp -----CCC-CCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCC
T ss_pred CcEEEEec-ceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCC
Confidence 45666666 888864 35899999998 999999999999999998653
No 138
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.64 E-value=1.2e-08 Score=72.68 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+|++++|+||||||||||++.|++..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999998754
No 139
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.64 E-value=3.8e-09 Score=76.51 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=32.9
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+.+..++..++|++++|+|||||||||+.+.++...
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567888888999999999999999999999998654
No 140
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.61 E-value=1.2e-08 Score=83.99 Aligned_cols=50 Identities=28% Similarity=0.536 Sum_probs=41.4
Q ss_pred CCCCC-ChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 107 PIANL-SGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 107 ~~~~L-SgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
++.+| ||||+|||+||++++. +||+.....+.+.++++ +.+||+||||++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~ 459 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ 459 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 45777 9999999999987764 47888888888887665 579999999965
No 141
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.60 E-value=1.9e-08 Score=72.74 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=23.6
Q ss_pred eeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 36 isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
..++.++|++++|+|||||||||++++|++.
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3466788999999999999999999999864
No 142
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.58 E-value=8.1e-09 Score=82.14 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=33.4
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+++++++.+++|++++|+||||||||||++++++.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 468899999999999999999999999999999864
No 143
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.58 E-value=1.3e-07 Score=68.41 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=50.2
Q ss_pred EEEEECCCCCCcchHHHHHHhhhhcceeeeccccchhhHh--hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLL--TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia 122 (158)
+++|+|||||||||+.++++... ...+. ........ .....+.++.+.+|... ..+.|+.+|..++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~lg--~~~id--~d~~~~~~~~~~~~~~~~i~~~~g~~~--------~~~~g~~~r~~l~ 71 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDLG--VPLVD--ADVVAREVVAKDSPLLSKIVEHFGAQI--------LTEQGELNRAALR 71 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTT--CCEEE--HHHHHHHTTCSSCHHHHHHHHHHCTTC--------C------CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC--Ccccc--hHHHHHHHccCChHHHHHHHHHhCHHH--------hccCccccHHHHH
Confidence 68999999999999999998621 10000 00000000 00123445566666432 1356788888876
Q ss_pred HHHhhC----------CCHHHHHHHHHHHhhc-CCeEEEEeecCC
Q 044538 123 LVSMYH----------LDTQSIVAVAVTLDEF-AGGVVLVSHDSR 156 (158)
Q Consensus 123 ~~~l~~----------lD~~~~~~l~~~l~~~-~~tvi~vtHd~~ 156 (158)
...+.+ +++.....+.+.+... +.++|+.+|.+.
T Consensus 72 ~~~f~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~ 116 (206)
T 1jjv_A 72 ERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLI 116 (206)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTT
T ss_pred HHHhCCHHHHHHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhh
Confidence 554432 2233344444445433 346777788653
No 144
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.57 E-value=4.6e-09 Score=86.58 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=32.9
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+++++++.+++|+.++|+||||||||||++++++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 357889999999999999999999999999999864
No 145
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.56 E-value=1.5e-08 Score=71.89 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=27.8
Q ss_pred eEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+|++.+|+.++|+||||||||||++.+++..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5677889999999999999999999998755
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.55 E-value=1.1e-08 Score=77.95 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=32.5
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
.+++++++++++| ++|+||||||||||++++++...
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence 4789999999999 89999999999999999997543
No 147
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.53 E-value=4.1e-08 Score=71.59 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
++|++++|+||||||||||++.|+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999999998643
No 148
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.53 E-value=2.6e-08 Score=71.14 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCcchHHHHHHh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
|++++|+||||||||||+++|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67999999999999999999985
No 149
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.52 E-value=1.9e-08 Score=79.88 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=29.3
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
+|++++ +++|++++|+||||||||||++++++...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 355544 78999999999999999999999987543
No 150
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.51 E-value=4.9e-08 Score=67.85 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=25.5
Q ss_pred eeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+.++++.+| +.+|+|||||||||++++|..
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4556666655 899999999999999999873
No 151
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.48 E-value=5.4e-08 Score=76.05 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=25.8
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
..++|++++|+|||||||||+++.|++..
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44789999999999999999999998643
No 152
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.45 E-value=4.8e-08 Score=77.12 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=25.0
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-+++|+++.|.||||||||||+..++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999888753
No 153
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.44 E-value=9e-08 Score=69.67 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=25.1
Q ss_pred eEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
|+...+|++++|+||||||||||++.|....
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4556689999999999999999999998543
No 154
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.44 E-value=8.7e-08 Score=71.40 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCcchHHHHHH
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
++++++|+||||||||||+++|+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999999998
No 155
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.43 E-value=3.2e-08 Score=73.20 Aligned_cols=31 Identities=19% Similarity=0.029 Sum_probs=27.5
Q ss_pred eeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 36 isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-+...++|++++|.|+|||||||++++|++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4556689999999999999999999999875
No 156
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.43 E-value=1.1e-07 Score=66.07 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
+|+.++|+||||||||||++++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999987553
No 157
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.43 E-value=3.2e-08 Score=73.94 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=34.5
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
...|.. ..+++++++++++| ++|+||||||||||++++++..
T Consensus 32 ~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 32 VEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 444533 24689999999999 8999999999999999998654
No 158
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.42 E-value=3.7e-08 Score=79.37 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=27.7
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+|+++ + ..+|++++|+||||||||||++++++.
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 45555 4 378999999999999999999999853
No 159
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.41 E-value=1.1e-07 Score=71.48 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCCcchHHHHHH
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
++|++++|+|||||||||++++++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999999998
No 160
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.41 E-value=4.6e-08 Score=75.42 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=26.4
Q ss_pred EEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
|++.+|++++|+||||||||||+++|++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccc
Confidence 56778999999999999999999999864
No 161
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.41 E-value=1e-07 Score=67.21 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+|++++|+|||||||||+.+.++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46899999999999999999999854
No 162
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.40 E-value=5.6e-09 Score=77.65 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=25.8
Q ss_pred eEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+|+|.+ ++++|+||||||||||+++|++.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcc
Confidence 677777 89999999999999999999854
No 163
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.40 E-value=4.2e-08 Score=74.39 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=31.5
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++++++++| ++|+||||||||||++++++..
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 4688999999999 8999999999999999998654
No 164
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.40 E-value=1.7e-07 Score=69.08 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=25.8
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-+++|++++|+||||||||||++.+++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999999999873
No 165
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.39 E-value=1.6e-07 Score=75.52 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=40.7
Q ss_pred CCCCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhcC---CeEEEEeecC
Q 044538 108 IANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEFA---GGVVLVSHDS 155 (158)
Q Consensus 108 ~~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~~---~tvi~vtHd~ 155 (158)
+..||||||||++||++++. +||+.....+.+.+++.. .++|+|||+.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~ 397 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN 397 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH
Confidence 34699999999999988761 699999999999998763 5899999985
No 166
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.38 E-value=7.4e-08 Score=74.32 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=24.7
Q ss_pred EEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 38 MGIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 38 l~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
+++.+|++++|+||||||||||+|+|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999999997
No 167
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.38 E-value=1.3e-07 Score=66.39 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.|++++|+|||||||||+.++++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999864
No 168
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.38 E-value=2.6e-06 Score=65.44 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=32.6
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+.|+.. .++++|+ +|++++++|+||+||||++..+++..
T Consensus 83 ~~~~~~~----~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 83 KEALGGE----ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp HHHTTSS----CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred HHHHCCC----CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5666432 1678888 99999999999999999999998754
No 169
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=1e-06 Score=68.44 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 128 HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 128 ~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
.+|......+.+.+.+.. .++|++||+.+.
T Consensus 145 ~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 145 SLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp SSCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred ccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 588999999999998763 579999998753
No 170
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.36 E-value=2.4e-08 Score=77.34 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=26.1
Q ss_pred EEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 38 MGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 38 l~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++.+|++++|+||||||||||+|+|++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 6788999999999999999999999975
No 171
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.35 E-value=8.4e-07 Score=71.37 Aligned_cols=28 Identities=29% Similarity=0.616 Sum_probs=25.6
Q ss_pred EEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 38 MGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 38 l~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++.+|++++|+||||||||||+++|++
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 6678899999999999999999999974
No 172
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.31 E-value=7.1e-08 Score=75.17 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=36.2
Q ss_pred eeeEEcCCCCCcceeeeeEEeeCCC------EEEEECCCCCCcchHHHHHHhhh
Q 044538 20 VISFSYPNLQDIRLSNVDMGIDMGT------CVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 20 ~~~~~~~~~~~~~l~~isl~i~~G~------~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
++++.|+.. ..+.+++..+.+++ ++||+||||||||||+++|.+..
T Consensus 65 ll~~~~~~~--~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 65 LLSFYVTAR--QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhhcch--HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 334555443 36788888888887 99999999999999999998653
No 173
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.30 E-value=3.2e-07 Score=66.78 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=24.8
Q ss_pred eeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
.+.++++.+ .+.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 345666666 489999999999999999886
No 174
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.29 E-value=2.5e-07 Score=66.93 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=25.4
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
...+|++++|+|+|||||||+++.++...
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999998643
No 175
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.28 E-value=2.1e-07 Score=72.42 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=30.3
Q ss_pred eeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++++|++.+|++++++|+||+||||++..|++.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999999999999988753
No 176
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.28 E-value=2.4e-07 Score=67.05 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=27.1
Q ss_pred eeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++--++++|.+++|+|++||||||+.+.|+..
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34456788999999999999999999999864
No 177
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.27 E-value=2.5e-06 Score=67.44 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=40.0
Q ss_pred CCCCCCChHHHHHHHHH------HHHhh-------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538 106 TPIANLSGGQKVRVMFT------LVSMY-------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR 156 (158)
Q Consensus 106 ~~~~~LSgGqkqrv~ia------~~~l~-------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~ 156 (158)
.++..|||||+||+++| +++.. +||+.....+.+.+.+.. .+||+||||.+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~ 347 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE 347 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH
Confidence 35678999999999664 33221 599999999999998764 48999999964
No 178
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.26 E-value=3.2e-06 Score=66.25 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=66.3
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-cceeeeccccchhhHhhHHHHHHHHHHH-cCCCCCCCCCCCC
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-QKLRIGRHSRHLEDLLTMEEAVHAKLRK-FGLPGHNHLTPIA 109 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~ 109 (158)
.|+.+.--+.+|+++.|.|++|+|||||+.-++.... ....+.++.- .++..+...+++.. .+++.... +. .
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl----Ems~~ql~~Rlls~~~~v~~~~l-~~-g 108 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL----EMSAEQLALRALSDLTSINMHDL-ES-G 108 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES----SSCHHHHHHHHHHHHHCCCHHHH-HH-T
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC----CCCHHHHHHHHHHHhhCCCHHHH-hc-C
Confidence 4666666799999999999999999999877764322 1122222211 11222323333322 23322111 12 5
Q ss_pred CCChHHHHHHHHHHHHhh----------CCCHHHHHHHHHHHh-hc-CCeEEEEee
Q 044538 110 NLSGGQKVRVMFTLVSMY----------HLDTQSIVAVAVTLD-EF-AGGVVLVSH 153 (158)
Q Consensus 110 ~LSgGqkqrv~ia~~~l~----------~lD~~~~~~l~~~l~-~~-~~tvi~vtH 153 (158)
.||.++.+|+..|...+. .+.........+.+. +. +..+|+|-|
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 799999999998765543 234444444444343 34 467787765
No 179
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.26 E-value=4.1e-07 Score=64.88 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=26.2
Q ss_pred eeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++|++..+|..++|+|++||||||+.+.++..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999999999999754
No 180
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.25 E-value=3.6e-07 Score=72.85 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=41.8
Q ss_pred hhhheeeeEEcCCCCCccee--------------eeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 15 LQLIEVISFSYPNLQDIRLS--------------NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~--------------~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+.+.++ ++.|+..+ ..++ |+++.+.+|+.++|+||+|||||||++.|+.
T Consensus 134 i~Fe~l-tp~yP~er-~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 134 ILFENL-TPLHANSR-LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp CCTTTS-CEESCCSB-CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred ceeccc-cccCCCCc-cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 445566 88998754 4688 8999999999999999999999999998874
No 181
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.23 E-value=4.7e-07 Score=67.11 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=25.2
Q ss_pred eeeeeEEee---CCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 33 LSNVDMGID---MGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 33 l~~isl~i~---~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
|.++|+.+. +|.+++|.|++||||||+++.++...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 667777776 99999999999999999999998543
No 182
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.18 E-value=2.2e-07 Score=76.52 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=30.1
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+++++|++.+| +.+|+|+||||||||+.+|..
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 477899999999 999999999999999999863
No 183
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.16 E-value=8.1e-07 Score=64.26 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.5
Q ss_pred EEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-...+|.+++|+|||||||||+.+.|+..
T Consensus 7 ~~~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 7 HHMARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp --CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999998754
No 184
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.16 E-value=9.5e-07 Score=64.50 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCcchHHHHHHh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+.+++|+||+||||||+.++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
No 185
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.13 E-value=1.1e-06 Score=62.20 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+|++++|+|++||||||+.+.++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999864
No 186
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.11 E-value=5.4e-07 Score=74.89 Aligned_cols=30 Identities=33% Similarity=0.331 Sum_probs=27.0
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
.+.+|++++|+|+||||||||+++|++...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 578999999999999999999999987543
No 187
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.10 E-value=1e-06 Score=68.28 Aligned_cols=46 Identities=13% Similarity=0.056 Sum_probs=31.1
Q ss_pred CCChHHHHHHHHHHHHhhCCCHHHH-HHHHHHHhhc--CCeEEEEeecC
Q 044538 110 NLSGGQKVRVMFTLVSMYHLDTQSI-VAVAVTLDEF--AGGVVLVSHDS 155 (158)
Q Consensus 110 ~LSgGqkqrv~ia~~~l~~lD~~~~-~~l~~~l~~~--~~tvi~vtHd~ 155 (158)
++|+||+||+..+++++.+.|.... ..+.+.+++. +.+|+++||+.
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~de~~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTCSCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred hchHHHHHHHhCCEEEEECcccCCHHHHHHHHHHHhCCCCeEEEecccC
Confidence 7899999999776555565552211 4555555544 46899999964
No 188
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.09 E-value=1.1e-06 Score=70.14 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=25.1
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+.+|..++|+|+||||||||+++|++
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 557899999999999999999999987
No 189
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.09 E-value=5.4e-07 Score=64.06 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCcchHHHHHHhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++++|+|+||||||||++.|++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 190
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.08 E-value=1.4e-05 Score=64.66 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=31.1
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.|+++..-+++|+++.|.|++|+|||||+..++..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 57888888999999999999999999998887753
No 191
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.08 E-value=4.8e-07 Score=70.81 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=32.6
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+++++++++.+|.+++|+|+||+|||||++.+++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999999999999753
No 192
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.08 E-value=5.4e-05 Score=59.09 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=59.3
Q ss_pred CCC--EEEEECCCCCCcchHHHHHHhhhhcc--eeeeccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHH
Q 044538 42 MGT--CVAIVGPNDTGKSPLPNLLAVRRRQK--LRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKV 117 (158)
Q Consensus 42 ~G~--~~~liG~nGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 117 (158)
.+. .+.|.||+|+|||||++.++...... ..+.+... ....+.......++..++... +....+.++..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~ 113 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING--FIYRNFTAIIGEIARSLNIPF-----PRRGLSRDEFL 113 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET--TTCCSHHHHHHHHHHHTTCCC-----CSSCCCHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC--ccCCCHHHHHHHHHHHhCccC-----CCCCCCHHHHH
Confidence 346 89999999999999999998654322 22222111 111122233445566665431 11234444433
Q ss_pred HHHHHHHH------h------hCCCHHHHHHHHHHHhh------cCCeEEEEeecC
Q 044538 118 RVMFTLVS------M------YHLDTQSIVAVAVTLDE------FAGGVVLVSHDS 155 (158)
Q Consensus 118 rv~ia~~~------l------~~lD~~~~~~l~~~l~~------~~~tvi~vtHd~ 155 (158)
........ + ..+|......+.+.+.+ .+..+|++||+.
T Consensus 114 ~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 114 ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 32221110 0 14677878888888754 245789999976
No 193
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.05 E-value=1.7e-06 Score=61.77 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|+||||||||++.+++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 194
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.04 E-value=2.4e-06 Score=62.84 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=27.5
Q ss_pred ceeee-eEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 32 RLSNV-DMGIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 32 ~l~~i-sl~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
.|+.+ .--+++|++++|.||||||||||+..++
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 46665 6678999999999999999999966554
No 195
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.03 E-value=1.8e-06 Score=62.08 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++|+|+|||||||+.+.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999986
No 196
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.02 E-value=2.4e-06 Score=61.20 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|+||||||||++.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 197
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.01 E-value=9.7e-06 Score=62.69 Aligned_cols=116 Identities=12% Similarity=0.122 Sum_probs=64.6
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-ceeeeccccchhhHhhHHHHHHHHHHH-cCCCCCCCCCCCC
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-KLRIGRHSRHLEDLLTMEEAVHAKLRK-FGLPGHNHLTPIA 109 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~ 109 (158)
.|+++.--+++|+++.|.|++|+|||||+.-++..... ...+.+..-. .+..+...+++.. .+++.... +. .
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE----~s~~~l~~R~~~~~~~i~~~~l-~~-~ 130 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE----MGKKENIKRLIVTAGSINAQKI-KA-A 130 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS----SCHHHHHHHHHHHHTTCCHHHH-HS-C
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC----CCHHHHHHHHHHHHcCCCHHHH-hc-C
Confidence 47777766999999999999999999998777643211 1122221111 1222323333322 23321111 11 2
Q ss_pred C--CChHHHHHHHHHHHHhh----------CCCHHHHHHHHHH-HhhcCCe--EEEEee
Q 044538 110 N--LSGGQKVRVMFTLVSMY----------HLDTQSIVAVAVT-LDEFAGG--VVLVSH 153 (158)
Q Consensus 110 ~--LSgGqkqrv~ia~~~l~----------~lD~~~~~~l~~~-l~~~~~t--vi~vtH 153 (158)
. ||.++++|+..|...+. .++.......++. .++.+.. +|+|-|
T Consensus 131 ~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 131 RRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3 99999999988765443 1334443333333 3344556 888765
No 198
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.99 E-value=2.7e-06 Score=65.45 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.8
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
.+|++++++|||||||||++..+++...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999986543
No 199
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.98 E-value=3.7e-06 Score=66.39 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=27.3
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
+++..+++.+ .+.+|+|||||||||++..|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 5677888877 489999999999999999986
No 200
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.96 E-value=3.3e-06 Score=64.76 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.++.+++|.||+|||||||.+.|....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999987543
No 201
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.93 E-value=3.4e-06 Score=59.64 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=21.9
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+|.+++|+|++||||||+.+.++.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999999974
No 202
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.91 E-value=4e-06 Score=59.51 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.0
Q ss_pred EEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+...+|.+++|+|++||||||+.+.++..
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 44467899999999999999999999754
No 203
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.91 E-value=4.7e-06 Score=59.92 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCcchHHHHHHhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
..+++|+|++||||||+.+.|+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
No 204
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.90 E-value=2.2e-06 Score=71.14 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=30.1
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++.++++++ +|+.++|+||||||||||+++++..
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 467778888 8999999999999999999999854
No 205
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.90 E-value=1.4e-06 Score=68.67 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=31.1
Q ss_pred ceeeeeEEeeCCCE--EEEECCCCCCcchHHHHHHhh
Q 044538 32 RLSNVDMGIDMGTC--VAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 32 ~l~~isl~i~~G~~--~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++.+++.+++|++ ++|+|++||||||+.++++..
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 56788888999999 999999999999999998753
No 206
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.89 E-value=1.3e-06 Score=73.16 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=34.3
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++++.+.+|+.++|+||||||||||+++|++..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4789999999999999999999999999999998754
No 207
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.87 E-value=5.3e-06 Score=60.21 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=26.2
Q ss_pred EEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+.+.+|.+++|+|++||||||+.+.++...
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 556789999999999999999999997643
No 208
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.86 E-value=3e-06 Score=69.67 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=31.0
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
..++++++++++| +.|+||||+|||||++++++..
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence 3678899999999 8999999999999999998643
No 209
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.86 E-value=7.3e-06 Score=60.54 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.7
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
-.+|.+++|+|++||||||+.+.++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999874
No 210
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.86 E-value=5.6e-06 Score=58.05 Aligned_cols=25 Identities=48% Similarity=0.555 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+|..++|+|++|+|||||++.+++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5778999999999999999999864
No 211
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.84 E-value=3.7e-06 Score=66.03 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=57.3
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhhhhcceeeecccc---ch-hhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHH
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSR---HL-EDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKV 117 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 117 (158)
..-.++++|+||+|||||++.+++.... .+..+. .. ...... . ...+..++.++... .+...+|+|++|
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~---~~~~~~~t~~~~~~~~~~-~--~~~~~l~Dt~G~~~-~~~~~~~~~~~~ 238 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE---IASYPFTTRGINVGQFED-G--YFRYQIIDTPGLLD-RPISERNEIEKQ 238 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE---EECCTTCSSCEEEEEEEE-T--TEEEEEEECTTTSS-SCSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc---cCCCCCeeeceeEEEEEe-c--CceEEEEeCCCccc-cchhhhhHHHHH
Confidence 3457899999999999999999864311 110000 00 000000 0 00112223333322 355789999998
Q ss_pred HHHHHHHHhh-------------CCCHHHHHHHHHHHhhc--CCeEEEEe--ecCC
Q 044538 118 RVMFTLVSMY-------------HLDTQSIVAVAVTLDEF--AGGVVLVS--HDSR 156 (158)
Q Consensus 118 rv~ia~~~l~-------------~lD~~~~~~l~~~l~~~--~~tvi~vt--Hd~~ 156 (158)
++. +.+... ++|......+++.+.+. +..+|+|. ||+.
T Consensus 239 ~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 239 AIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp HHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred HHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 775 222111 23666666666666542 46777777 7763
No 212
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.84 E-value=7.1e-06 Score=58.36 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=19.9
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++++++..++. .++++|++|+|||||++.+..
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 578999998887 569999999999999999875
No 213
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.83 E-value=7.7e-06 Score=64.23 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++.+++|+|++|||||||++.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999863
No 214
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.83 E-value=4.7e-06 Score=64.10 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++.+++|+|++|+|||||++.+.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999864
No 215
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.82 E-value=8.8e-06 Score=56.53 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++|+|++||||||+.+.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
No 216
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.81 E-value=6.6e-06 Score=64.62 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=26.6
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+|++++++++ .++|+|++|||||||++.+.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999 8999999999999999999974
No 217
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.81 E-value=1.1e-05 Score=56.56 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.|.++.|+|++||||||+.+.++..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999753
No 218
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.79 E-value=1.9e-06 Score=61.87 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=29.9
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
++.|++.. .+++++|+..++.+ ++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------C-HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHH-HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 45566543 47889999888875 68999999999999998864
No 219
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=2.4e-06 Score=66.41 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.9
Q ss_pred cceeeeeEEeeCCCE--EEEECCCCCCcchHHHHHHh
Q 044538 31 IRLSNVDMGIDMGTC--VAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 31 ~~l~~isl~i~~G~~--~~liG~nGsGKSTLl~~i~~ 65 (158)
.+++.++..+..|++ +.+.||+|+||||++++++.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 467889999999998 99999999999999999874
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.78 E-value=8.2e-06 Score=60.82 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=24.1
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.++++++.++.| +.|.||+|+|||||++.++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 355666666665 8899999999999999998654
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.77 E-value=8.1e-06 Score=62.80 Aligned_cols=40 Identities=23% Similarity=0.111 Sum_probs=31.5
Q ss_pred eEEcCCCCCcceee-eeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 22 SFSYPNLQDIRLSN-VDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 22 ~~~~~~~~~~~l~~-isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
...|+... ++ ++|+.+ |++++++|+||+||||++..++..
T Consensus 81 ~~~~~~~~----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 81 SNLFGGDK----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp HHHTTCSC----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred HHHhcccc----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 45565432 46 788876 999999999999999999988754
No 222
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.77 E-value=1.3e-05 Score=56.54 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+|.+++|.|++||||||+.+.++.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999875
No 223
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.73 E-value=1.5e-05 Score=55.29 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 224
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.72 E-value=1.2e-05 Score=56.88 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++.++.|+|++||||||+.+.++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999999874
No 225
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.71 E-value=1.7e-05 Score=57.69 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+-+++|+|++||||||+.+.++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 226
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.70 E-value=1.6e-05 Score=54.96 Aligned_cols=19 Identities=37% Similarity=0.586 Sum_probs=18.1
Q ss_pred EEEEECCCCCCcchHHHHH
Q 044538 45 CVAIVGPNDTGKSPLPNLL 63 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i 63 (158)
+++|+||+||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999998
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.70 E-value=1.7e-05 Score=59.05 Aligned_cols=24 Identities=42% Similarity=0.500 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCcchHHHHHHhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.-+++|.||+||||||+.+.++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999743
No 228
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.70 E-value=1.2e-05 Score=60.17 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=24.6
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
...++.++.|+|++||||||+.+.++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5667889999999999999999999754
No 229
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.69 E-value=1.2e-05 Score=56.75 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
..+.++.|+|++||||||+.+.++.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4678899999999999999999873
No 230
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.69 E-value=1.4e-05 Score=64.34 Aligned_cols=39 Identities=15% Similarity=0.038 Sum_probs=31.3
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
...|+... ++++|+ +|++++++|+|||||||++..+++.
T Consensus 83 ~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 83 KEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp HHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 55565431 577887 8999999999999999999988854
No 231
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.68 E-value=2.1e-05 Score=56.21 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+|.+++|+|+.||||||+.+.++..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999754
No 232
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.67 E-value=2.2e-05 Score=55.84 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCcchHHHHHHhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+++|+|++|||||||++.+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999999988754
No 233
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.66 E-value=2.7e-05 Score=55.96 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+.|+||||||||||++.+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999988643
No 234
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.66 E-value=2.4e-05 Score=55.23 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+..+.|+|++||||||+.+.++.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999873
No 235
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.64 E-value=2.1e-05 Score=58.96 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.2
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++|+||||||||||.+.|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999874
No 236
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.63 E-value=2.5e-05 Score=59.62 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
..+.++.|.||+||||||+.+.++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998743
No 237
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.63 E-value=2.1e-05 Score=55.17 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|++||||||+.+.|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 238
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.63 E-value=6.9e-05 Score=64.58 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.1
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+..|+.+.|+||+||||||++.++..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998877754
No 239
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.63 E-value=2.5e-05 Score=55.64 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++|.|++||||||+.+.++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999853
No 240
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.62 E-value=2.6e-05 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999863
No 241
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.62 E-value=2.9e-05 Score=54.52 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=17.5
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++.++.|.|++||||||+.+.++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999743
No 242
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.60 E-value=3e-05 Score=60.87 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=24.6
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-+++|+++.|.||||||||||+..++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998777643
No 243
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.60 E-value=2.9e-05 Score=55.80 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+|.+++|.|+.||||||+.+.++.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999974
No 244
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.60 E-value=2.8e-05 Score=55.12 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++.+++|+|+.||||||+.+.++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999874
No 245
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.59 E-value=2.7e-05 Score=54.92 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|++|+|||||++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999976
No 246
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.59 E-value=2.8e-05 Score=55.45 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCcchHHHHHHhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+++|+|++||||||+.+.++..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999754
No 247
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.58 E-value=3.2e-05 Score=54.02 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++.|.|++||||||+.+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 248
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.58 E-value=3.2e-05 Score=55.65 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.9
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
..+|.+++|+|+.||||||+.+.++.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999999974
No 249
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.58 E-value=3.3e-05 Score=55.39 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+|.+++|.|+.||||||+.+.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999753
No 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.57 E-value=2.3e-05 Score=67.86 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=27.5
Q ss_pred eEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+|.+.+|+.+.|+||||||||||++++++..
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4568899999999999999999999998653
No 251
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=3.7e-05 Score=54.29 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCcchHHHHHHh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+.+++|+|++||||||+.+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998863
No 252
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.52 E-value=3e-05 Score=59.36 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=25.3
Q ss_pred eEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
++.+.++..+.|.||+|+|||||.+.++.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 34567889999999999999999999974
No 253
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.52 E-value=1.4e-05 Score=56.92 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.3
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++.+.+++|+|+.||||||+.+.++.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999999874
No 254
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.49 E-value=4.7e-05 Score=53.68 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.6
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++|.|++||||||+.+.++..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 255
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.48 E-value=0.001 Score=53.61 Aligned_cols=116 Identities=12% Similarity=0.121 Sum_probs=64.3
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--ceeeeccccchhhHhhHHHHHHHHH-HHcCCCCCCCCCCC
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--KLRIGRHSRHLEDLLTMEEAVHAKL-RKFGLPGHNHLTPI 108 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~ 108 (158)
.|+.+.--+++|+++.|.|++|+|||||+.-++..... ...+.+..-. .+..+...+++ ...+++.... + -
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE----~~~~~l~~R~~~~~~~i~~~~l-~-~ 262 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE----MPAAQLTLRMMCSEARIDMNRV-R-L 262 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS----SCHHHHHHHHHHHHTTCCTTTC-C-G
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC----CCHHHHHHHHHHHHcCCCHHHH-h-C
Confidence 35555555899999999999999999998777643221 1122221111 11222233333 2345543222 2 2
Q ss_pred CCCChHHHHHHHHHHHHhh----------CCCHHHHHHHH-HHHhhcCCeEEEEee
Q 044538 109 ANLSGGQKVRVMFTLVSMY----------HLDTQSIVAVA-VTLDEFAGGVVLVSH 153 (158)
Q Consensus 109 ~~LSgGqkqrv~ia~~~l~----------~lD~~~~~~l~-~~l~~~~~tvi~vtH 153 (158)
..||..+.+|+.-|...+. .++........ +..++.+..+|+|-+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5799999999877544332 23444433333 333345566777643
No 256
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.48 E-value=1.6e-05 Score=57.24 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.6
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++|.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998743
No 257
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.46 E-value=3.5e-05 Score=65.35 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=24.9
Q ss_pred eEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
|+++.++..++|+|+||+|||||++.+.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 467788999999999999999999999854
No 258
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.46 E-value=5.6e-05 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++|.|+.||||||+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 259
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.46 E-value=6.8e-05 Score=54.52 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+|.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999874
No 260
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.46 E-value=4.1e-05 Score=56.41 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=22.9
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+.+|+.+++.||+||||||++..+..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 456799999999999999998876653
No 261
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.45 E-value=5.9e-05 Score=53.94 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.7
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++|.|++||||||+.+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999975
No 262
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.44 E-value=6.2e-05 Score=57.58 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=18.1
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
++-+++|.||+||||||+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998875
No 263
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.41 E-value=7.2e-05 Score=54.70 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=20.9
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++.+++|+|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999874
No 264
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.40 E-value=9e-05 Score=53.07 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+.+++|+|+.||||||+.+.++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999874
No 265
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.39 E-value=7.5e-05 Score=54.96 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|++|+|||||++.+.+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4799999999999999999863
No 266
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.38 E-value=7.9e-05 Score=53.85 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.7
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+||.||||||+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999863
No 267
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.37 E-value=7e-05 Score=54.52 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+.++.|+|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999874
No 268
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.37 E-value=8.8e-05 Score=52.48 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCcchHHHHHHhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+++|+|++|||||||+..+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999887753
No 269
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.37 E-value=3.7e-05 Score=62.84 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=29.3
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.++++++.+++| +.|+||+|+|||||.+.+++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 567788888887 7899999999999999998754
No 270
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.36 E-value=7.8e-05 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+++|+|+.||||||+.+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 271
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.36 E-value=7.1e-05 Score=59.77 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=23.8
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+..|..++|+|+||+|||||++.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567788999999999999999999753
No 272
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.36 E-value=4.8e-05 Score=59.91 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=28.8
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+.+.++ ...|.. +.++++++|.| +|+|+||+|||||++.|.+
T Consensus 18 v~~~~l-~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 18 VGFANL-PNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ---CCH-HHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTT
T ss_pred EEeccc-hHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhC
Confidence 444443 444432 24577888876 9999999999999999864
No 273
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.36 E-value=9.2e-05 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.6
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++|.|+.||||||+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 274
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.36 E-value=7.4e-05 Score=56.22 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|++|||||||++.+++.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999854
No 275
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.35 E-value=8.5e-05 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+++|+|+.||||||+.+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 276
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.35 E-value=8.9e-05 Score=53.04 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
...+++|+|+.||||||+.+.++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998873
No 277
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.34 E-value=8.4e-05 Score=59.88 Aligned_cols=22 Identities=45% Similarity=0.522 Sum_probs=20.4
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|+||||||||++.+.+.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 278
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.34 E-value=9.6e-05 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++.++.|+|++||||||+.+.++..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999998753
No 279
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.34 E-value=9.7e-05 Score=53.42 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=18.7
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+||.||||||+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999863
No 280
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.33 E-value=0.0001 Score=57.62 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=25.3
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999888754
No 281
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.32 E-value=0.00011 Score=50.80 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++|.|+.||||||+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999975
No 282
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.32 E-value=0.00012 Score=50.88 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
++++|+|+.||||||+.+.++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999974
No 283
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.31 E-value=9.8e-05 Score=52.00 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCcchHHHHHHh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
..+++|+|+.||||||+.+.++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 284
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.31 E-value=0.00011 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCcchHHHHHHhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-+++|+|+.||||||+.+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999753
No 285
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.29 E-value=0.00011 Score=54.61 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
-+++|.|+.||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 286
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.29 E-value=0.00014 Score=52.73 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+..+.|.||+|+|||||++.++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999998874
No 287
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.29 E-value=0.0001 Score=58.20 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++|+|++|||||||++.+++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 389999999999999999985
No 288
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.27 E-value=0.00012 Score=54.27 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
++-+++|+||.||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999999873
No 289
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.26 E-value=0.00013 Score=60.12 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=28.2
Q ss_pred eeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+++++.++..+.|.|++||||||+++.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999999998753
No 290
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.26 E-value=0.00017 Score=57.05 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCcchHHHHHH
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
.+..++|+||+||||||+++.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHH
Confidence 57788999999999999999886
No 291
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.23 E-value=0.00017 Score=55.86 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=25.2
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-+++|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888753
No 292
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.21 E-value=0.00018 Score=53.18 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=20.2
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+|.++++.|++||||||+.+.+...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999988743
No 293
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.21 E-value=0.00017 Score=52.77 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++|.|++||||||+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999874
No 294
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.21 E-value=0.00014 Score=55.19 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCcchHHHHHH
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~ 64 (158)
..+++|+|+.||||||+.+.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999987
No 295
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.21 E-value=0.00019 Score=54.36 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++..+.|.||+|+||||+.+.++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00017 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCcchHHHHHHhhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
-.++++|+.|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999997643
No 297
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.20 E-value=0.00014 Score=56.45 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
..+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999988643
No 298
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.19 E-value=0.00014 Score=58.75 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++.+++++|||||||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999888743
No 299
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.15 E-value=0.00019 Score=52.13 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+|-.++|+|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999974
No 300
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.15 E-value=0.00019 Score=54.42 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|++|||||||++.+++.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999863
No 301
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.14 E-value=0.00022 Score=48.68 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999875
No 302
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.12 E-value=0.00025 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCcchHHHHHHhhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
..+.|.||+|+|||||++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999987543
No 303
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.11 E-value=0.00026 Score=48.05 Aligned_cols=22 Identities=45% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++++|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988753
No 304
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.10 E-value=0.00021 Score=51.66 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|.|+.||||||+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 305
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.10 E-value=0.00026 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999998874
No 306
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.10 E-value=0.00021 Score=52.50 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=23.6
Q ss_pred eEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 37 DMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 37 sl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+-.+.+..++.|+||.||||+|..+.|+.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456678899999999999999998873
No 307
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.09 E-value=0.00023 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCcchHHHHHHhhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
..+.|.||+|+||||+.+.++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 578999999999999999998543
No 308
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.09 E-value=0.00024 Score=48.18 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999874
No 309
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.09 E-value=0.00022 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++++|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998743
No 310
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.08 E-value=0.00032 Score=48.68 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+..+.|.||.|+||||+++.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988754
No 311
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.07 E-value=0.00028 Score=48.51 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 479999999999999999874
No 312
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.07 E-value=0.00029 Score=48.20 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999999874
No 313
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.07 E-value=0.00035 Score=48.25 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+.-.++++|+.|+|||||++.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999874
No 314
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.07 E-value=0.00028 Score=47.95 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999875
No 315
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.07 E-value=0.00037 Score=53.96 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=28.5
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
..+++..+.+ .|.-++|+|+||+||||+...+..
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 3577777887 788899999999999999887763
No 316
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.06 E-value=0.00029 Score=48.68 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999998874
No 317
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.0003 Score=48.12 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999875
No 318
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.06 E-value=0.00027 Score=53.57 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++.|+|++||||||+.+.++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 319
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.05 E-value=0.0003 Score=47.90 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 379999999999999999874
No 320
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.05 E-value=0.00032 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.6
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+.++..+.|.||+|+|||||.+.++.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45667799999999999999999974
No 321
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.05 E-value=0.00031 Score=48.12 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=18.2
Q ss_pred EEEEECCCCCCcchHHHHHH
Q 044538 45 CVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~ 64 (158)
.++++|+.|+|||||++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999886
No 322
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.05 E-value=0.00035 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+..+.|+|+.||||||+.+.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
No 323
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.04 E-value=0.00028 Score=56.51 Aligned_cols=28 Identities=25% Similarity=0.126 Sum_probs=23.6
Q ss_pred EEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 38 MGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 38 l~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+.-.+..++.|+|++||||||+.+.++.
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3345678999999999999999998864
No 324
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.04 E-value=0.00028 Score=48.15 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998874
No 325
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.03 E-value=0.00032 Score=48.37 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 379999999999999999874
No 326
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.03 E-value=0.00031 Score=51.34 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=21.9
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+|.++++.|+.||||||+.+.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999998864
No 327
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.03 E-value=0.00033 Score=47.84 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.3
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++++|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3799999999999999998753
No 328
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.02 E-value=0.00027 Score=48.25 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.7
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998863
No 329
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.01 E-value=0.00031 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCcchHHHHHHh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+.+++|+|+.||||||+.+.++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998873
No 330
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.01 E-value=0.00034 Score=48.29 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999864
No 331
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.00 E-value=0.00031 Score=47.98 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 379999999999999999874
No 332
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.00 E-value=0.00036 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+|.++++.|++||||||+.+.+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998874
No 333
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.00 E-value=0.00033 Score=54.86 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+++|+||+|||||||.+.|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3789999999999999988874
No 334
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.99 E-value=0.00019 Score=49.89 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCcchHHHHHH
Q 044538 44 TCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~ 64 (158)
-.++++|++|+|||||++.+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999886
No 335
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.99 E-value=0.00034 Score=53.85 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=24.4
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
-+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999887764
No 336
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.99 E-value=0.00036 Score=56.84 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=28.4
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++.+ +.+-+|+..+|+|++|+|||||++.++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 44444 67789999999999999999999988743
No 337
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.98 E-value=0.00031 Score=53.92 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+..+.|.||+|+|||||++.++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34678999999999999999998643
No 338
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.98 E-value=0.00034 Score=48.30 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999875
No 339
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.98 E-value=0.00065 Score=49.36 Aligned_cols=32 Identities=31% Similarity=0.344 Sum_probs=25.8
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
.+...-+.+ .|..+.|+||+|+|||||...++
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHH
Confidence 456655554 57889999999999999988876
No 340
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.98 E-value=0.00038 Score=47.64 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999874
No 341
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.98 E-value=0.00039 Score=48.93 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=18.2
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|++|+|||||++.+..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999987763
No 342
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.98 E-value=0.0003 Score=49.44 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCcchHHHHHHhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-.++|+|+.|+|||||++.+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998753
No 343
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.97 E-value=0.00031 Score=49.19 Aligned_cols=22 Identities=50% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|+.|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998754
No 344
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.97 E-value=0.0004 Score=47.38 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999874
No 345
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.97 E-value=0.00039 Score=48.52 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999974
No 346
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.96 E-value=0.00037 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.6
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4799999999999999999753
No 347
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.96 E-value=0.00041 Score=48.30 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999974
No 348
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.96 E-value=0.0004 Score=48.84 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 469999999999999999875
No 349
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.95 E-value=0.00043 Score=47.15 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999999874
No 350
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.94 E-value=0.00044 Score=50.54 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+|.++++-|++||||||+.+.+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998874
No 351
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.94 E-value=0.00044 Score=47.71 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 379999999999999999874
No 352
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.93 E-value=0.00042 Score=53.74 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCcchHHHHHHh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+.+++|+||+|||||||...++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 45789999999999999988874
No 353
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.93 E-value=0.00035 Score=48.77 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 368999999999999999875
No 354
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.93 E-value=0.00044 Score=47.98 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 479999999999999999874
No 355
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.92 E-value=0.00053 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+.|.||.|+|||||++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988753
No 356
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.92 E-value=0.0004 Score=47.83 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999874
No 357
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.92 E-value=0.00046 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999999974
No 358
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.0006 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.5
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHH
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
+++|+++.|.|+.|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999976554
No 359
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.92 E-value=0.00047 Score=48.36 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++++|+.|+|||||++.+.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 360
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.91 E-value=0.00048 Score=48.21 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.2
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|+.|+|||||++.+.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4699999999999999988753
No 361
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.91 E-value=0.00043 Score=54.14 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
++.+++|+||.|||||||...|+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998874
No 362
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.91 E-value=0.00045 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+++|+||+|||||||.+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998874
No 363
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.91 E-value=0.00047 Score=47.93 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999874
No 364
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.90 E-value=0.00039 Score=48.24 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+..+.|.||.|+||||+++.++..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999988754
No 365
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.90 E-value=0.00048 Score=47.62 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 479999999999999999874
No 366
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.90 E-value=0.00049 Score=47.39 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999975
No 367
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.89 E-value=0.00048 Score=49.47 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=19.6
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++++|+.|+|||||++.+...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999998753
No 368
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.89 E-value=0.00053 Score=47.45 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999999874
No 369
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.89 E-value=0.00051 Score=50.37 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+|.++.+-|+.||||||+.+.+....
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987543
No 370
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.88 E-value=0.00057 Score=50.45 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=22.2
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+....-+.|.||.|+||||+.+.++..
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344566889999999999999999753
No 371
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.88 E-value=0.00017 Score=62.49 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=27.4
Q ss_pred eeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 36 isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++.+.+++.+.|.||+|||||||.+.++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 3667889999999999999999999999853
No 372
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.87 E-value=0.00044 Score=54.69 Aligned_cols=22 Identities=45% Similarity=0.520 Sum_probs=19.5
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|++|+|||||++.+++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3699999999999999999853
No 373
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.86 E-value=0.00047 Score=48.23 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 469999999999999999875
No 374
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.86 E-value=0.00048 Score=49.61 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCcchHHHHHHhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-.++++|+.|+|||||++.++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999988754
No 375
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.86 E-value=0.00045 Score=51.75 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|+.|||||||++.+.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999864
No 376
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.86 E-value=0.00054 Score=48.47 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999874
No 377
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.85 E-value=0.0006 Score=53.83 Aligned_cols=23 Identities=43% Similarity=0.478 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCcchHHHHHHh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
|-.++|+|.+|+|||||++.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35689999999999999999985
No 378
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.85 E-value=0.00054 Score=50.50 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+|.++++.|+.||||||+.+.+...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999988743
No 379
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.85 E-value=0.0005 Score=47.86 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999874
No 380
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.84 E-value=0.00049 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCcchHHHHHHhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
|.+++|.|+.||||||+.+.++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 381
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.84 E-value=0.00057 Score=47.97 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999999874
No 382
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.84 E-value=0.00058 Score=47.39 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999998874
No 383
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.84 E-value=0.00052 Score=52.64 Aligned_cols=22 Identities=50% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999853
No 384
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.84 E-value=0.0007 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=23.7
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++|+++.|.|++|+|||||...++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999877764
No 385
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.84 E-value=0.00052 Score=47.64 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999998873
No 386
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.83 E-value=0.0006 Score=48.36 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999999874
No 387
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.83 E-value=0.00044 Score=49.19 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=18.4
Q ss_pred EEEEECCCCCCcchHHHHHH
Q 044538 45 CVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~ 64 (158)
.++|+|++|+|||||++.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999885
No 388
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.82 E-value=0.00013 Score=54.41 Aligned_cols=31 Identities=39% Similarity=0.556 Sum_probs=23.4
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+.++.+..+.| +.|.||+|+|||||.+.++.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHH
Confidence 33444455555 77999999999999999973
No 389
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.81 E-value=0.00062 Score=47.77 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+.+
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999874
No 390
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.80 E-value=0.00064 Score=48.19 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998875
No 391
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.80 E-value=0.00059 Score=48.13 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 479999999999999999874
No 392
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=0.00023 Score=54.82 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=27.0
Q ss_pred ceeeeeEEeeCC--CEEEEECCCCCCcchHHHHHHhh
Q 044538 32 RLSNVDMGIDMG--TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 32 ~l~~isl~i~~G--~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++.+.-.+..| ..+.|.||+|+||||+++.++..
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 455555556666 44899999999999999998754
No 393
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.79 E-value=0.00054 Score=48.22 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 479999999999999999975
No 394
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.79 E-value=0.00064 Score=50.94 Aligned_cols=21 Identities=38% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|||||||++.+++
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 479999999999999999985
No 395
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.79 E-value=0.00069 Score=47.53 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 469999999999999999874
No 396
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.78 E-value=0.00066 Score=49.33 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.7
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
++.|+||.||||+|..+.|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998873
No 397
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.78 E-value=0.00068 Score=47.68 Aligned_cols=21 Identities=29% Similarity=0.233 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 479999999999999999874
No 398
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.78 E-value=0.00059 Score=47.61 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
=.++++|+.|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3579999999999999999874
No 399
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.78 E-value=0.00055 Score=51.52 Aligned_cols=20 Identities=40% Similarity=0.497 Sum_probs=18.1
Q ss_pred EEEEECCCCCCcchHHHHHH
Q 044538 45 CVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~ 64 (158)
.++|+|++|+|||||++.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37999999999999999875
No 400
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.78 E-value=0.00083 Score=46.48 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999998874
No 401
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.77 E-value=0.00062 Score=48.80 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.7
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|++|+|||||++.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 479999999999999998864
No 402
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.76 E-value=0.00057 Score=55.12 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCcchHHHHHHhhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+..+.|.||+|+|||||++.++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998543
No 403
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.75 E-value=0.00067 Score=52.10 Aligned_cols=23 Identities=48% Similarity=0.476 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCcchHHHHHHhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+++|+|+.|+|||||++.+.+.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999853
No 404
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.75 E-value=0.00072 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCcchHHHHHHh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
..+++|+||+|||||||...++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 35789999999999999988874
No 405
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.75 E-value=0.00065 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999753
No 406
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.75 E-value=0.00065 Score=48.25 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999999874
No 407
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.74 E-value=0.00074 Score=47.83 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999874
No 408
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.74 E-value=0.00077 Score=47.48 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 479999999999999999874
No 409
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.74 E-value=0.00068 Score=47.46 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999874
No 410
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.00068 Score=47.69 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.4
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|+.|+|||||++.+...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4699999999999999998753
No 411
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.73 E-value=0.00066 Score=54.77 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=23.0
Q ss_pred EEeeCC--CEEEEECCCCCCcchHHHHHHhh
Q 044538 38 MGIDMG--TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 38 l~i~~G--~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
|.+.++ .+++++|++|+||||+...++..
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444434 58999999999999999888753
No 412
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.0008 Score=47.52 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999875
No 413
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.72 E-value=0.00066 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|+.|||||||++.+.+.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999853
No 414
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.72 E-value=0.00079 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999975
No 415
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.72 E-value=0.00037 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++.+++|.|+.||||||+.+.|+..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999988744
No 416
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.72 E-value=0.0007 Score=48.14 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 479999999999999998863
No 417
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.00082 Score=47.02 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 579999999999999999874
No 418
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.71 E-value=0.00058 Score=47.47 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=9.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999998863
No 419
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.70 E-value=0.00084 Score=47.59 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 579999999999999999874
No 420
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.70 E-value=0.00073 Score=48.82 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCcchHHHHHHhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-.++|+|+.|+|||||++-++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999888753
No 421
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.70 E-value=0.00079 Score=47.51 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999874
No 422
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.69 E-value=0.00062 Score=47.10 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999998875
No 423
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.68 E-value=0.00086 Score=47.15 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999874
No 424
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.68 E-value=0.00087 Score=47.69 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+.+
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999874
No 425
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.68 E-value=0.00091 Score=47.02 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.7
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 479999999999999988874
No 426
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.68 E-value=0.00088 Score=47.90 Aligned_cols=21 Identities=38% Similarity=0.373 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999998875
No 427
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.68 E-value=0.00079 Score=47.88 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999874
No 428
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.67 E-value=0.00079 Score=48.32 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.1
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999975
No 429
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.66 E-value=0.00094 Score=47.85 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 469999999999999999874
No 430
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.65 E-value=0.00081 Score=48.88 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|+.|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999998753
No 431
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.65 E-value=0.00096 Score=47.17 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999998873
No 432
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.00086 Score=47.88 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999874
No 433
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.64 E-value=0.00066 Score=47.64 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++++|+.|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999998754
No 434
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.64 E-value=0.00072 Score=47.13 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++++|+.|+|||||++.+...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4699999999999999999753
No 435
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.63 E-value=0.00088 Score=48.19 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 479999999999999998874
No 436
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.63 E-value=0.00099 Score=45.28 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+.-+.|.||.|+|||++.+.+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3455799999999999999999753
No 437
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.63 E-value=0.0023 Score=51.71 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=26.8
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
|+.+.--+.+|+.+.|.|++|+|||||+.-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 444443589999999999999999999776654
No 438
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.62 E-value=0.0011 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.0
Q ss_pred CCCEEEEECCCCCCcchHH-HHH
Q 044538 42 MGTCVAIVGPNDTGKSPLP-NLL 63 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl-~~i 63 (158)
+|.++.+.||.||||||++ +++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 4889999999999999997 444
No 439
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.62 E-value=0.00079 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
..+..+.|.||.|+||||+++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988754
No 440
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.58 E-value=0.00099 Score=47.33 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999874
No 441
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.58 E-value=0.00094 Score=47.23 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998863
No 442
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.57 E-value=0.0012 Score=50.09 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.2
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++..+.|.||.|+||||+.+.++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999998874
No 443
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.57 E-value=0.001 Score=47.04 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=18.6
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999997764
No 444
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0011 Score=46.64 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999874
No 445
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.55 E-value=0.001 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEECCCCCCcchHHHHHHhhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.++|+|+.|+|||||++.+.+..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998643
No 446
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.54 E-value=0.001 Score=53.24 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+++|.||+|||||||...++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4789999999999999988874
No 447
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.54 E-value=0.0011 Score=46.95 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+.|.||.|+||||+++.++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998874
No 448
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.52 E-value=0.0018 Score=46.06 Aligned_cols=31 Identities=26% Similarity=0.105 Sum_probs=23.4
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
++..-+. -.|.-+.|.|+||+|||||...+.
T Consensus 7 lHas~v~-v~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 7 WHANFLV-IDKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp EESEEEE-ETTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHH
Confidence 4443444 457789999999999999987665
No 449
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.52 E-value=0.00042 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCcchHHHHHHhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
-.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 450
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.52 E-value=0.0013 Score=47.67 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCcchHHHHHHh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
|.++++=|+-||||||+++.+..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 56889999999999999998874
No 451
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0014 Score=47.65 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.0
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|++|+|||||++.+.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998874
No 452
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.51 E-value=0.0012 Score=47.15 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.7
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 579999999999999988874
No 453
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.49 E-value=0.0013 Score=51.21 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.1
Q ss_pred EEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
--+++|..+.|.||.|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 45788899999999999999999888754
No 454
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.48 E-value=0.0013 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
++.+++++|++|+||||++.-++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999887764
No 455
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.47 E-value=0.0015 Score=48.39 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
-.+||+|+.||||||+.+.|+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 3579999999999999998864
No 456
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.46 E-value=0.0016 Score=50.25 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999998543
No 457
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.46 E-value=0.0013 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++++|+.|+|||||++.+.+.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999854
No 458
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.46 E-value=0.0013 Score=46.74 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.8
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 479999999999999998874
No 459
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.44 E-value=0.0013 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++++|+.|+|||||++.+.+.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999853
No 460
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.43 E-value=0.00068 Score=47.94 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=4.2
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|+.|+|||||++.+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999988643
No 461
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.43 E-value=0.0015 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
++..+.|.||+|+||||+.+.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999974
No 462
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0015 Score=47.22 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 479999999999999999874
No 463
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.42 E-value=0.0017 Score=49.47 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCcchHHHHHHhhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
...+.|.||.|+|||+|.+.++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788999999999999998543
No 464
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.42 E-value=0.0009 Score=46.85 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=18.4
Q ss_pred EEEEECCCCCCcchHHHHHH
Q 044538 45 CVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~ 64 (158)
.++++|+.|+|||||++.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
No 465
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.40 E-value=0.0017 Score=46.79 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 479999999999999998874
No 466
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.40 E-value=0.0013 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEECCCCCCcchHHHHHHhhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999998654
No 467
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.39 E-value=0.0017 Score=50.45 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+|..+.|.||.|+||||+.+.++...
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998544
No 468
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.38 E-value=0.0017 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCcchHHHHHHhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+..+.|.||.|+||||+.+.++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999743
No 469
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.37 E-value=0.002 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCcchHHHHHHhhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+..+.|.||.|+|||+|+..++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999987543
No 470
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.37 E-value=0.0015 Score=49.05 Aligned_cols=22 Identities=45% Similarity=0.469 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
-.++++|.+|+|||||++.+.+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 471
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.36 E-value=0.0016 Score=46.39 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=18.9
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999998874
No 472
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.34 E-value=0.0015 Score=48.80 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+...+.|.||.|+||||+.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999754
No 473
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.34 E-value=0.0021 Score=49.38 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+..-+.|.||.|+|||+|.+.++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 455689999999999999999974
No 474
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.33 E-value=0.0018 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCcchHHHHHHh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
..-+++|+|+.|+|||||++.++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 475
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.32 E-value=0.0022 Score=50.14 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+...+.|.||.|+|||||.+.++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35667999999999999999999743
No 476
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.32 E-value=0.0022 Score=50.58 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=23.6
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
-+++|+++.|.||.|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 378999999999999999999876653
No 477
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.31 E-value=0.0017 Score=52.47 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.++|+|++|+|||||++.+.+.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999753
No 478
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.31 E-value=0.0011 Score=53.56 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=24.4
Q ss_pred eeeEEeeCCCE--EEEECCCCCCcchHHHHHHh
Q 044538 35 NVDMGIDMGTC--VAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 35 ~isl~i~~G~~--~~liG~nGsGKSTLl~~i~~ 65 (158)
.+.-.+..|.+ +.|.||+|+||||+.+.++.
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHH
Confidence 44445555665 89999999999999999974
No 479
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.0021 Score=49.98 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCcchHHHHHHhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+..+.|.||.|+|||||++.++..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 557999999999999999988754
No 480
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.25 E-value=0.0014 Score=47.05 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.5
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++|+|+.|+|||||++.+.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999988763
No 481
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.21 E-value=0.0019 Score=53.13 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
+.|.++.|+|.+||||||+-+.++....
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999986543
No 482
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.20 E-value=0.0022 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+|.++.|+|.+||||||+.+.++..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998753
No 483
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.17 E-value=0.0029 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCcchHHHHHHhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
|..+.|.||.|+|||||++.+...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 589999999999999999988643
No 484
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.15 E-value=0.0023 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.|.++.|+|.+||||||+.+.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998754
No 485
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.14 E-value=0.0016 Score=46.83 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.9
Q ss_pred EEEEECCCCCCcchHHHHH
Q 044538 45 CVAIVGPNDTGKSPLPNLL 63 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i 63 (158)
.++++|+.|+|||||++.+
T Consensus 17 ki~v~G~~~~GKSsli~~~ 35 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRH 35 (221)
T ss_dssp EEEEEECTTSSHHHHHTTB
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999999974
No 486
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.13 E-value=0.0015 Score=46.26 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=17.9
Q ss_pred EEEEECCCCCCcchHHHHHH
Q 044538 45 CVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~ 64 (158)
.++|+|+.|+|||||++.+.
T Consensus 35 ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSB
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999998775
No 487
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.12 E-value=0.0027 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCcchHHHHHHhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
..+.|.||.|+||||+.+.++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999743
No 488
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.11 E-value=0.0028 Score=49.67 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCcchHHHHHHhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
...+.|.||.|+||||+.+.++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999743
No 489
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.11 E-value=0.00092 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.4
Q ss_pred EEEEECCCCCCcchHHHHHHh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~ 65 (158)
.++++|+.|+|||||++.+..
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 479999999999999987763
No 490
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.10 E-value=0.0025 Score=48.45 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCcchHHHHHHh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
...+.|.||.|+||||+.+.++.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999874
No 491
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.09 E-value=0.0025 Score=46.56 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.6
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++...+.+.||.|+||||+...++..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 566667999999999999998888754
No 492
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.09 E-value=0.0029 Score=49.46 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=21.3
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+..-+.|.||.|+|||||.+.++..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 34455889999999999999999743
No 493
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.02 E-value=0.003 Score=50.46 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=27.2
Q ss_pred eeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
|.=+.+.+|+..+|+|++|+|||||+..|+.
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHH
Confidence 5557789999999999999999999987763
No 494
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.99 E-value=0.0029 Score=48.45 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCcchHHHHHHh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~ 65 (158)
-.++|+|+.|+|||||++.+..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998763
No 495
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.99 E-value=0.0035 Score=46.53 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCcchHHHHHHhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+..+.|.||.|+|||++.+.+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 456789999999999999999753
No 496
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.95 E-value=0.0037 Score=45.60 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=18.5
Q ss_pred EEEEECCCCCCcchHHHHHH
Q 044538 45 CVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~ 64 (158)
.+||+|.-||||||+.+++.
T Consensus 11 ~iglTGgigsGKStv~~~l~ 30 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFA 30 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999986
No 497
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.95 E-value=0.0015 Score=44.28 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+.-+.|.||.|+|||++.+.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3455889999999999999988643
No 498
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.89 E-value=0.0044 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=19.6
Q ss_pred eCCCEEEEECCCCCCcchHHHHHH
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
.+|.++.+.||.|+||||++--++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHH
Confidence 468899999999999999765444
No 499
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.89 E-value=0.0035 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=20.3
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+..+++++|++||||||++..|+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999988874
No 500
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.86 E-value=0.0048 Score=49.70 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+..-+.|.||.|+|||||.+.++..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35567899999999999999999854
Done!