Query 044539
Match_columns 217
No_of_seqs 194 out of 1299
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:15:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1E-43 2.2E-48 321.5 13.8 204 8-217 391-611 (889)
2 PLN03210 Resistant to P. syrin 99.7 1E-16 2.2E-21 151.7 11.3 186 12-217 420-651 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.2 5.6E-12 1.2E-16 102.4 2.5 52 11-62 233-284 (287)
4 PF12799 LRR_4: Leucine Rich r 98.7 7.7E-09 1.7E-13 59.7 2.9 40 178-217 1-40 (44)
5 PF13855 LRR_8: Leucine rich r 98.5 2.2E-07 4.8E-12 57.5 4.0 59 151-213 2-61 (61)
6 PF13855 LRR_8: Leucine rich r 97.7 2.7E-05 5.9E-10 48.0 2.2 39 178-216 1-40 (61)
7 PLN03150 hypothetical protein; 97.7 8.6E-05 1.9E-09 66.9 6.0 80 130-214 420-503 (623)
8 KOG4658 Apoptotic ATPase [Sign 97.6 2.1E-05 4.5E-10 73.0 1.7 79 129-212 546-629 (889)
9 KOG0472 Leucine-rich repeat pr 97.6 2.7E-05 5.9E-10 65.0 1.8 50 168-217 242-291 (565)
10 PF14580 LRR_9: Leucine-rich r 97.6 6.5E-05 1.4E-09 56.6 3.3 82 128-215 42-127 (175)
11 PLN00113 leucine-rich repeat r 97.5 0.00018 3.9E-09 68.0 5.5 42 172-213 158-200 (968)
12 KOG0617 Ras suppressor protein 97.4 1.9E-05 4.1E-10 58.9 -1.3 49 168-217 141-189 (264)
13 KOG0444 Cytoskeletal regulator 97.4 1.7E-05 3.6E-10 69.8 -2.2 48 168-216 213-260 (1255)
14 PF00560 LRR_1: Leucine Rich R 97.4 6.4E-05 1.4E-09 36.4 0.7 22 179-200 1-22 (22)
15 KOG0617 Ras suppressor protein 97.3 2.5E-05 5.3E-10 58.2 -1.9 88 126-217 77-166 (264)
16 PLN00113 leucine-rich repeat r 97.3 0.00035 7.6E-09 66.1 5.2 42 172-213 206-248 (968)
17 PF14580 LRR_9: Leucine-rich r 97.1 0.00098 2.1E-08 50.2 5.2 83 127-216 18-103 (175)
18 PLN03210 Resistant to P. syrin 97.0 0.0016 3.5E-08 62.9 6.4 44 173-216 652-697 (1153)
19 PF12799 LRR_4: Leucine Rich r 97.0 0.0012 2.6E-08 37.8 3.4 39 151-194 2-40 (44)
20 KOG0444 Cytoskeletal regulator 96.9 0.0002 4.4E-09 63.2 -0.4 46 172-217 120-166 (1255)
21 PLN03150 hypothetical protein; 96.8 0.0019 4.2E-08 58.3 5.2 59 152-214 420-479 (623)
22 KOG0472 Leucine-rich repeat pr 96.7 0.00088 1.9E-08 56.3 2.2 43 172-214 499-541 (565)
23 PF13504 LRR_7: Leucine rich r 96.7 0.0011 2.3E-08 29.8 1.3 16 202-217 2-17 (17)
24 PF13504 LRR_7: Leucine rich r 96.5 0.0015 3.2E-08 29.4 1.2 17 178-194 1-17 (17)
25 KOG3665 ZYG-1-like serine/thre 96.5 0.0014 3E-08 59.7 2.0 62 145-211 144-205 (699)
26 PRK15370 E3 ubiquitin-protein 96.2 0.011 2.4E-07 54.5 5.9 37 179-217 263-299 (754)
27 PF00560 LRR_1: Leucine Rich R 95.7 0.0035 7.6E-08 30.1 0.3 16 202-217 1-16 (22)
28 PRK15370 E3 ubiquitin-protein 95.6 0.021 4.6E-07 52.6 5.3 82 126-217 197-278 (754)
29 PRK15387 E3 ubiquitin-protein 95.6 0.015 3.2E-07 53.7 4.2 37 178-214 422-458 (788)
30 KOG0618 Serine/threonine phosp 95.5 0.0038 8.2E-08 57.5 0.2 65 145-215 64-128 (1081)
31 smart00370 LRR Leucine-rich re 94.8 0.025 5.3E-07 28.2 1.9 18 200-217 1-18 (26)
32 smart00369 LRR_TYP Leucine-ric 94.8 0.025 5.3E-07 28.2 1.9 18 200-217 1-18 (26)
33 KOG0618 Serine/threonine phosp 94.8 0.0047 1E-07 56.8 -1.5 44 173-216 378-422 (1081)
34 KOG1259 Nischarin, modulator o 94.7 0.013 2.8E-07 47.7 1.1 45 172-216 368-414 (490)
35 cd00116 LRR_RI Leucine-rich re 94.6 0.023 5.1E-07 46.4 2.4 41 174-214 189-234 (319)
36 COG4886 Leucine-rich repeat (L 94.4 0.025 5.4E-07 48.0 2.1 38 179-216 141-178 (394)
37 smart00370 LRR Leucine-rich re 94.4 0.029 6.4E-07 27.9 1.6 22 177-198 1-22 (26)
38 smart00369 LRR_TYP Leucine-ric 94.4 0.029 6.4E-07 27.9 1.6 22 177-198 1-22 (26)
39 KOG1259 Nischarin, modulator o 94.3 0.0077 1.7E-07 49.0 -1.0 82 128-216 307-389 (490)
40 PRK15387 E3 ubiquitin-protein 94.1 0.11 2.4E-06 48.1 5.7 25 27-53 47-71 (788)
41 KOG3665 ZYG-1-like serine/thre 93.8 0.036 7.9E-07 50.7 2.1 85 127-214 147-263 (699)
42 cd00116 LRR_RI Leucine-rich re 93.8 0.039 8.5E-07 45.0 2.0 83 130-214 110-206 (319)
43 KOG2739 Leucine-rich acidic nu 93.6 0.072 1.6E-06 42.3 3.1 70 142-215 58-130 (260)
44 COG4886 Leucine-rich repeat (L 93.3 0.031 6.8E-07 47.4 0.8 62 151-217 141-202 (394)
45 KOG4579 Leucine-rich repeat (L 93.3 0.024 5.1E-07 41.1 0.0 80 132-217 57-139 (177)
46 KOG0531 Protein phosphatase 1, 93.2 0.049 1.1E-06 46.7 1.8 63 147-216 93-155 (414)
47 PRK15386 type III secretion pr 92.4 0.31 6.8E-06 41.8 5.4 78 126-215 70-170 (426)
48 KOG0532 Leucine-rich repeat (L 92.0 0.022 4.8E-07 50.1 -1.8 45 172-217 183-227 (722)
49 KOG4194 Membrane glycoprotein 91.6 0.12 2.6E-06 46.0 2.1 44 172-215 191-235 (873)
50 KOG4194 Membrane glycoprotein 91.2 0.3 6.6E-06 43.5 4.2 61 151-215 79-139 (873)
51 KOG0531 Protein phosphatase 1, 90.8 0.15 3.3E-06 43.7 2.1 82 127-216 94-177 (414)
52 KOG4237 Extracellular matrix p 90.5 0.14 3E-06 43.4 1.4 49 168-217 82-132 (498)
53 PRK15386 type III secretion pr 90.5 0.3 6.4E-06 41.9 3.4 64 128-199 52-116 (426)
54 KOG3207 Beta-tubulin folding c 90.4 0.099 2.2E-06 44.6 0.6 85 127-214 120-210 (505)
55 KOG0532 Leucine-rich repeat (L 90.0 0.21 4.6E-06 44.2 2.2 35 180-214 213-247 (722)
56 KOG1909 Ran GTPase-activating 89.4 0.38 8.3E-06 40.0 3.1 43 172-214 207-254 (382)
57 smart00365 LRR_SD22 Leucine-ri 89.0 0.31 6.7E-06 24.4 1.5 16 200-215 1-16 (26)
58 KOG4237 Extracellular matrix p 87.7 0.35 7.6E-06 41.0 1.9 36 181-216 70-106 (498)
59 KOG3207 Beta-tubulin folding c 87.4 0.17 3.7E-06 43.3 -0.1 32 128-160 197-232 (505)
60 KOG1644 U2-associated snRNP A' 86.8 1.1 2.3E-05 34.8 3.9 36 174-209 109-148 (233)
61 PF13516 LRR_6: Leucine Rich r 86.8 0.33 7.1E-06 23.4 0.8 14 201-214 2-15 (24)
62 KOG2739 Leucine-rich acidic nu 86.7 0.44 9.5E-06 38.0 1.9 44 172-215 59-105 (260)
63 smart00364 LRR_BAC Leucine-ric 86.2 0.49 1.1E-05 23.6 1.2 16 202-217 3-18 (26)
64 KOG0473 Leucine-rich repeat pr 84.4 0.12 2.7E-06 40.7 -2.1 45 168-213 79-123 (326)
65 KOG2982 Uncharacterized conser 83.0 0.68 1.5E-05 38.0 1.4 13 177-189 120-132 (418)
66 KOG4579 Leucine-rich repeat (L 81.9 0.31 6.7E-06 35.4 -0.7 43 172-214 71-113 (177)
67 KOG3864 Uncharacterized conser 80.9 0.67 1.5E-05 35.7 0.7 65 143-210 119-185 (221)
68 smart00368 LRR_RI Leucine rich 78.5 1.7 3.7E-05 21.9 1.5 14 201-214 2-15 (28)
69 KOG1859 Leucine-rich repeat pr 75.8 0.44 9.6E-06 43.6 -1.8 44 172-216 181-224 (1096)
70 KOG2982 Uncharacterized conser 74.1 3.3 7.1E-05 34.2 2.8 61 148-214 70-134 (418)
71 KOG1644 U2-associated snRNP A' 73.0 3.2 6.9E-05 32.2 2.4 69 142-215 57-127 (233)
72 KOG1859 Leucine-rich repeat pr 71.6 0.51 1.1E-05 43.2 -2.4 33 180-213 234-266 (1096)
73 KOG2123 Uncharacterized conser 69.1 0.51 1.1E-05 38.3 -2.7 39 172-210 57-97 (388)
74 cd04443 DEP_GPR155 DEP (Dishev 65.9 18 0.00039 23.6 4.6 39 46-86 32-70 (83)
75 KOG2120 SCF ubiquitin ligase, 63.5 1 2.2E-05 37.1 -2.1 34 21-57 97-131 (419)
76 PF00610 DEP: Domain found in 61.4 37 0.00079 21.1 5.5 42 44-87 17-60 (74)
77 cd04441 DEP_2_DEP6 DEP (Dishev 60.8 27 0.00059 22.9 4.7 38 47-86 35-72 (85)
78 cd04440 DEP_2_P-Rex DEP (Dishe 60.6 27 0.00058 23.4 4.7 38 47-86 40-77 (93)
79 smart00367 LRR_CC Leucine-rich 60.1 6.1 0.00013 19.3 1.2 14 201-214 2-16 (26)
80 PF14162 YozD: YozD-like prote 60.0 13 0.00028 21.8 2.6 28 56-83 23-52 (57)
81 cd04448 DEP_PIKfyve DEP (Dishe 59.7 29 0.00063 22.4 4.7 39 47-87 31-69 (81)
82 KOG1909 Ran GTPase-activating 55.1 2.5 5.3E-05 35.4 -1.2 44 144-189 208-252 (382)
83 cd04444 DEP_PLEK2 DEP (Disheve 51.4 25 0.00053 24.3 3.4 39 48-88 35-73 (109)
84 cd04439 DEP_1_P-Rex DEP (Dishe 50.6 54 0.0012 21.2 4.8 39 46-86 30-68 (81)
85 PRK04841 transcriptional regul 50.5 38 0.00082 32.1 5.7 82 13-109 250-332 (903)
86 smart00049 DEP Domain found in 48.9 57 0.0012 20.4 4.8 40 45-86 21-60 (77)
87 cd04442 DEP_1_DEP6 DEP (Dishev 48.5 50 0.0011 21.5 4.4 37 48-86 32-68 (82)
88 KOG2120 SCF ubiquitin ligase, 45.3 14 0.0003 30.7 1.7 38 173-210 333-372 (419)
89 smart00446 LRRcap occurring C- 37.1 13 0.00028 18.5 0.2 14 197-210 9-22 (26)
90 PF08362 TetR_C_3: YcdC-like p 33.9 70 0.0015 23.2 3.7 18 46-63 71-88 (143)
91 KOG0473 Leucine-rich repeat pr 33.8 4 8.7E-05 32.5 -2.9 66 146-217 39-104 (326)
92 PF15385 SARG: Specifically an 33.2 24 0.00053 31.2 1.4 16 21-36 7-22 (497)
93 KOG2123 Uncharacterized conser 31.2 3.2 6.9E-05 33.9 -3.9 15 173-187 83-97 (388)
94 KOG2297 Predicted translation 30.2 57 0.0012 27.2 2.9 41 23-63 126-166 (412)
95 PF13306 LRR_5: Leucine rich r 29.6 1.4E+02 0.003 20.2 4.6 74 129-210 36-112 (129)
96 COG3432 Predicted transcriptio 28.9 1.6E+02 0.0034 19.8 4.4 38 64-104 44-81 (95)
97 COG2909 MalT ATP-dependent tra 28.7 1.8E+02 0.004 27.7 6.2 75 22-111 266-340 (894)
98 cd04371 DEP DEP domain, named 28.4 1.5E+02 0.0033 18.4 4.7 40 45-86 29-68 (81)
99 PF13463 HTH_27: Winged helix 27.7 1.4E+02 0.003 17.7 4.3 32 65-96 32-63 (68)
100 cd04761 HTH_MerR-SF Helix-Turn 27.2 64 0.0014 17.8 2.1 14 49-62 15-28 (49)
101 PF04255 DUF433: Protein of un 27.1 89 0.0019 18.4 2.8 26 41-70 15-40 (56)
102 cd04449 DEP_DEPDC5-like DEP (D 25.1 1.9E+02 0.0042 18.5 4.3 39 47-86 32-70 (83)
103 PF09675 Chlamy_scaf: Chlamydi 24.5 37 0.00081 23.3 0.8 15 21-35 46-60 (114)
104 COG5626 Uncharacterized small 24.5 77 0.0017 20.8 2.2 16 51-66 53-68 (97)
105 PF11372 DUF3173: Domain of un 24.1 1.2E+02 0.0025 18.5 2.8 33 44-80 3-35 (59)
106 cd04438 DEP_dishevelled DEP (D 24.0 2.1E+02 0.0046 18.6 5.6 37 47-86 32-70 (84)
107 KOG1947 Leucine rich repeat pr 23.2 39 0.00084 29.0 1.0 36 177-212 268-306 (482)
108 cd04445 DEP_PLEK1 DEP (Disheve 22.9 2.1E+02 0.0047 19.3 4.2 41 45-87 32-72 (99)
109 smart00541 FYRN "FY-rich" doma 22.4 27 0.00058 19.7 -0.1 11 37-47 14-24 (44)
110 cd04437 DEP_Epac DEP (Dishevel 22.0 2.5E+02 0.0055 19.8 4.7 37 48-86 34-71 (125)
111 PF05402 PqqD: Coenzyme PQQ sy 21.3 1.5E+02 0.0033 17.8 3.2 37 45-82 30-68 (68)
112 PHA02126 hypothetical protein 21.2 33 0.00072 23.9 0.1 14 13-26 39-52 (153)
113 TIGR01837 PHA_granule_1 poly(h 20.2 87 0.0019 21.8 2.0 22 64-85 20-41 (118)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-43 Score=321.50 Aligned_cols=204 Identities=26% Similarity=0.328 Sum_probs=175.5
Q ss_pred hhhHHHHHHHHHHccccchHhHHHHHHHhhhcCCCCeecHHHHHHHHHHcCCCCCC-----hHHHHHHHHHHHHhCCCcc
Q 044539 8 KEVLDELRGLQVVAYCMLHFYLKLCCLYLSVFLVYFEISTKQLYQLWIAEGFIPDN-----NEAIAERYLEQLINGGFVD 82 (217)
Q Consensus 8 ~~~~~~i~~~l~lsY~~Lp~~lk~Cfl~~s~Fp~~~~i~~~~Li~~WiaeG~i~~~-----~e~~~~~~~~~L~~r~l~~ 82 (217)
.+..+.++++|++|||+||.++|.||+|||+||+||.|++++||.+||||||+.+. +++.|+.|+.+|++++|++
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 45578999999999999998899999999999999999999999999999999884 8999999999999999999
Q ss_pred ceecCCCCCeeEEEeChhHHHHHHHhhc-----ccceEeeecC-----CCCccCCCceeEEEEeCCCCc-cccccCCCCC
Q 044539 83 VGKKSDRGRINTCSIPGRCSLALLTGAF-----EGEFVISPIM-----DQEVKLRENVKRFTAHGNLND-FEFLDHFDSF 151 (217)
Q Consensus 83 ~~~~~~~~~~~~~~mhdlv~dla~~i~~-----~e~~~~~~~~-----~~~~~~~~~~r~ls~~~~~~~-~~~~~~~~~~ 151 (217)
..... +...+|+|||+|||+|.++|. +|+.+. ..+ ..+......+||++++.+... .......+ +
T Consensus 471 ~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv-~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~-~ 546 (889)
T KOG4658|consen 471 EERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIV-SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENP-K 546 (889)
T ss_pred hcccc--cceeEEEeeHHHHHHHHHHhccccccccceEE-ECCcCccccccccchhheeEEEEeccchhhccCCCCCC-c
Confidence 87654 566889999999999999999 777555 222 112224578899999998876 66677888 9
Q ss_pred eeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCC-CccCCccccccccCCEEeeCCCCcccCC
Q 044539 152 LHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLV-LIRYPSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 152 LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~-i~~lP~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
++||.+.++... ...... .+|..++.||||||++|. +.+||++||+|.|||||+|++|.|+.||
T Consensus 547 L~tLll~~n~~~-l~~is~-~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP 611 (889)
T KOG4658|consen 547 LRTLLLQRNSDW-LLEISG-EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP 611 (889)
T ss_pred cceEEEeecchh-hhhcCH-HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc
Confidence 999999987531 233444 789999999999999877 8899999999999999999999999887
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=1e-16 Score=151.71 Aligned_cols=186 Identities=15% Similarity=0.032 Sum_probs=124.6
Q ss_pred HHHHHHHHHccccchHh-HHHHHHHhhhcCCCCeecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceecCCCC
Q 044539 12 DELRGLQVVAYCMLHFY-LKLCCLYLSVFLVYFEISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKKSDRG 90 (217)
Q Consensus 12 ~~i~~~l~lsY~~Lp~~-lk~Cfl~~s~Fp~~~~i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~~~~~ 90 (217)
.+|.++|++||++|+++ .|.||++||+||.+..++ .+..|.|.+... ++..++.|+++||++...
T Consensus 420 ~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~----- 485 (1153)
T PLN03210 420 GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLKNLVDKSLIHVRE----- 485 (1153)
T ss_pred HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChHHHHhcCCEEEcC-----
Confidence 47999999999999875 999999999999997543 367788876553 334589999999998643
Q ss_pred CeeEEEeChhHHHHHHHhhcccc-------eEeeecCC-----CCccCCCceeEEEEeCCCCc-----cccccCCCCCee
Q 044539 91 RINTCSIPGRCSLALLTGAFEGE-------FVISPIMD-----QEVKLRENVKRFTAHGNLND-----FEFLDHFDSFLH 153 (217)
Q Consensus 91 ~~~~~~mhdlv~dla~~i~~~e~-------~~~~~~~~-----~~~~~~~~~r~ls~~~~~~~-----~~~~~~~~~~Lr 153 (217)
..++|||++|++|+.+++++. +.. ...+ ...+...+++.+++..+... ...+..++ +||
T Consensus 486 --~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~-~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~-~L~ 561 (1153)
T PLN03210 486 --DIVEMHSLLQEMGKEIVRAQSNEPGEREFLV-DAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR-NLL 561 (1153)
T ss_pred --CeEEhhhHHHHHHHHHHHhhcCCCCcceeEe-CHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc-ccc
Confidence 258999999999999987653 221 0000 00112345666666543322 11234455 566
Q ss_pred EEEEeCCCCC---------------------------CCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEE
Q 044539 154 SLLHLTLGSH---------------------------YLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYL 206 (217)
Q Consensus 154 sL~~~~~~~~---------------------------~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL 206 (217)
.|.+...... +....+| ..+ .+.+|+.|+|.++.++.+|+.++.|.+|++|
T Consensus 562 ~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP-~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L 639 (1153)
T PLN03210 562 FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP-SNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNI 639 (1153)
T ss_pred EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC-CcC-CccCCcEEECcCccccccccccccCCCCCEE
Confidence 5555332100 0011233 333 4678899999998899999999999999999
Q ss_pred eeCCCC-cccCC
Q 044539 207 NLNIPS-LKSLL 217 (217)
Q Consensus 207 ~L~~t~-i~~L~ 217 (217)
+|+++. ++++|
T Consensus 640 ~Ls~~~~l~~ip 651 (1153)
T PLN03210 640 DLRGSKNLKEIP 651 (1153)
T ss_pred ECCCCCCcCcCC
Confidence 998764 55543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.21 E-value=5.6e-12 Score=102.39 Aligned_cols=52 Identities=35% Similarity=0.540 Sum_probs=47.3
Q ss_pred HHHHHHHHHHccccchHhHHHHHHHhhhcCCCCeecHHHHHHHHHHcCCCCC
Q 044539 11 LDELRGLQVVAYCMLHFYLKLCCLYLSVFLVYFEISTKQLYQLWIAEGFIPD 62 (217)
Q Consensus 11 ~~~i~~~l~lsY~~Lp~~lk~Cfl~~s~Fp~~~~i~~~~Li~~WiaeG~i~~ 62 (217)
...+..++.+||+.||+++|.||+|||+||+++.|+++.||++|+|||||.+
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 5779999999999999999999999999999999999999999999999975
No 4
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.75 E-value=7.7e-09 Score=59.68 Aligned_cols=40 Identities=30% Similarity=0.353 Sum_probs=35.1
Q ss_pred CceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccCC
Q 044539 178 NFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 178 ~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
++|++|+|++++|+.+|..|++|++|++|++++++|+.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4789999999999999999999999999999999998763
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=2.2e-07 Score=57.55 Aligned_cols=59 Identities=29% Similarity=0.182 Sum_probs=49.2
Q ss_pred CeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-cccccccCCEEeeCCCCc
Q 044539 151 FLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLFLLRYLNLNIPSL 213 (217)
Q Consensus 151 ~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~LryL~L~~t~i 213 (217)
+|++|.+.++.- ..+.+ ..|..+++|++|+++++.+..+|+ .+..|++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l---~~i~~-~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKL---TEIPP-DSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTE---SEECT-TTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCC---CccCH-HHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 788888877643 33444 789999999999999999998875 678999999999999875
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.68 E-value=2.7e-05 Score=48.00 Aligned_cols=39 Identities=33% Similarity=0.353 Sum_probs=34.7
Q ss_pred CceeEEEeCCCCCccCCc-cccccccCCEEeeCCCCcccC
Q 044539 178 NFLRVLDLGSLVLIRYPS-EVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 178 ~~LrvLdL~~~~i~~lP~-~I~~L~~LryL~L~~t~i~~L 216 (217)
++|++|++++|.+..+|. .+..+.+|++|+++++.|+.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i 40 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI 40 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc
Confidence 468999999999999985 678999999999999998765
No 7
>PLN03150 hypothetical protein; Provisional
Probab=97.67 E-value=8.6e-05 Score=66.90 Aligned_cols=80 Identities=23% Similarity=0.125 Sum_probs=60.3
Q ss_pred eeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCc-cCCccccccccCCE
Q 044539 130 VKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLI-RYPSEVENLFLLRY 205 (217)
Q Consensus 130 ~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~-~lP~~I~~L~~Lry 205 (217)
++.|.+..+... ...+..++ +|+.|.+.++.. ...+| ..++.+++|++|+|++|.+. .+|+++++|.+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l---~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSI---RGNIP-PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcc---cCcCC-hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 344444443332 23355678 999998877653 23455 78899999999999999976 89999999999999
Q ss_pred EeeCCCCcc
Q 044539 206 LNLNIPSLK 214 (217)
Q Consensus 206 L~L~~t~i~ 214 (217)
|+|+++++.
T Consensus 495 L~Ls~N~l~ 503 (623)
T PLN03150 495 LNLNGNSLS 503 (623)
T ss_pred EECcCCccc
Confidence 999998765
No 8
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.64 E-value=2.1e-05 Score=73.03 Aligned_cols=79 Identities=23% Similarity=0.232 Sum_probs=66.0
Q ss_pred ceeEEEEeCCCC---cccc--ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccC
Q 044539 129 NVKRFTAHGNLN---DFEF--LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLL 203 (217)
Q Consensus 129 ~~r~ls~~~~~~---~~~~--~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~L 203 (217)
+.|.+.+..+.. .... +..++ .||+|.+.++.. ...+| ..++++-+||+|+|+++.+..+|.++++|+.|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~-~LrVLDLs~~~~---l~~LP-~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLP-LLRVLDLSGNSS---LSKLP-SSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCc-ceEEEECCCCCc---cCcCC-hHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 578888887642 2222 67799 999999997543 34677 99999999999999999999999999999999
Q ss_pred CEEeeCCCC
Q 044539 204 RYLNLNIPS 212 (217)
Q Consensus 204 ryL~L~~t~ 212 (217)
.||++..|.
T Consensus 621 ~~Lnl~~~~ 629 (889)
T KOG4658|consen 621 IYLNLEVTG 629 (889)
T ss_pred heecccccc
Confidence 999999765
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.61 E-value=2.7e-05 Score=65.02 Aligned_cols=50 Identities=32% Similarity=0.240 Sum_probs=45.1
Q ss_pred ccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccCC
Q 044539 168 NYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 168 ~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
.+|.+..+.+.+|.||||+.++++++|++|+.|..|.|||++++.|+.||
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCC
Confidence 34436778999999999999999999999999999999999999999886
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.57 E-value=6.5e-05 Score=56.58 Aligned_cols=82 Identities=17% Similarity=0.059 Sum_probs=33.6
Q ss_pred CceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhh-cCCCceeEEEeCCCCCccCC--ccccccccC
Q 044539 128 ENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKIC-KMFNFLRVLDLGSLVLIRYP--SEVENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~-~~l~~LrvLdL~~~~i~~lP--~~I~~L~~L 203 (217)
.+.+.+.+..+... +.....++ +|++|.+.++.-. .++ ..+ ..+++|+.|+|+++.|..+- ..+..+++|
T Consensus 42 ~~L~~L~Ls~N~I~~l~~l~~L~-~L~~L~L~~N~I~----~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L 115 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEGLPGLP-RLKTLDLSNNRIS----SIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKL 115 (175)
T ss_dssp TT--EEE-TTS--S--TT----T-T--EEE--SS-------S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT-
T ss_pred cCCCEEECCCCCCccccCccChh-hhhhcccCCCCCC----ccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCc
Confidence 45567777666654 45566677 8888877766543 122 222 45788888888888876432 456677888
Q ss_pred CEEeeCCCCccc
Q 044539 204 RYLNLNIPSLKS 215 (217)
Q Consensus 204 ryL~L~~t~i~~ 215 (217)
++|+|.++.|.+
T Consensus 116 ~~L~L~~NPv~~ 127 (175)
T PF14580_consen 116 RVLSLEGNPVCE 127 (175)
T ss_dssp -EEE-TT-GGGG
T ss_pred ceeeccCCcccc
Confidence 888888887754
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.46 E-value=0.00018 Score=67.98 Aligned_cols=42 Identities=38% Similarity=0.563 Sum_probs=21.3
Q ss_pred hhhcCCCceeEEEeCCCCCc-cCCccccccccCCEEeeCCCCc
Q 044539 172 KICKMFNFLRVLDLGSLVLI-RYPSEVENLFLLRYLNLNIPSL 213 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~-~lP~~I~~L~~LryL~L~~t~i 213 (217)
..++.+++||+|+|++|.+. .+|..+++|.+|++|+|++|.+
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence 44455555555555555532 4555555555555555554443
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.42 E-value=1.9e-05 Score=58.86 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=28.3
Q ss_pred ccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccCC
Q 044539 168 NYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 168 ~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
++| ..++++++|++|.+..+.+-.+|.+||.|..||-|.+.+++++-||
T Consensus 141 ~lp-~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 141 ILP-PDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cCC-hhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 344 5555666666666666555556666666666666666655555443
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.38 E-value=1.7e-05 Score=69.82 Aligned_cols=48 Identities=29% Similarity=0.196 Sum_probs=43.8
Q ss_pred ccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccC
Q 044539 168 NYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 168 ~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L 216 (217)
.+| ..+..+.+|+-+||+.+.+..+|+.+-+|.+||-|+|+++.|++|
T Consensus 213 N~P-tsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 213 NIP-TSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred cCC-CchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee
Confidence 455 788899999999999999999999999999999999999999886
No 14
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.38 E-value=6.4e-05 Score=36.37 Aligned_cols=22 Identities=41% Similarity=0.442 Sum_probs=18.4
Q ss_pred ceeEEEeCCCCCccCCcccccc
Q 044539 179 FLRVLDLGSLVLIRYPSEVENL 200 (217)
Q Consensus 179 ~LrvLdL~~~~i~~lP~~I~~L 200 (217)
+|++|||++|.++.+|+++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887764
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.29 E-value=2.5e-05 Score=58.25 Aligned_cols=88 Identities=20% Similarity=0.064 Sum_probs=68.5
Q ss_pred CCCceeEEEEeCCCCc--cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccC
Q 044539 126 LRENVKRFTAHGNLND--FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLL 203 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~--~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~L 203 (217)
...+.|++-+.-+... ...+..++ .+..|.+..++- ....+| ..|-.++-||.|.|+.+.++-+|.++|+|++|
T Consensus 77 sl~klr~lnvgmnrl~~lprgfgs~p-~levldltynnl--~e~~lp-gnff~m~tlralyl~dndfe~lp~dvg~lt~l 152 (264)
T KOG0617|consen 77 SLPKLRILNVGMNRLNILPRGFGSFP-ALEVLDLTYNNL--NENSLP-GNFFYMTTLRALYLGDNDFEILPPDVGKLTNL 152 (264)
T ss_pred hchhhhheecchhhhhcCccccCCCc-hhhhhhcccccc--ccccCC-cchhHHHHHHHHHhcCCCcccCChhhhhhcce
Confidence 3456777766544433 34567788 888888876654 344566 66677899999999999999999999999999
Q ss_pred CEEeeCCCCcccCC
Q 044539 204 RYLNLNIPSLKSLL 217 (217)
Q Consensus 204 ryL~L~~t~i~~L~ 217 (217)
+.|+++.+++-+||
T Consensus 153 qil~lrdndll~lp 166 (264)
T KOG0617|consen 153 QILSLRDNDLLSLP 166 (264)
T ss_pred eEEeeccCchhhCc
Confidence 99999999887775
No 16
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.29 E-value=0.00035 Score=66.08 Aligned_cols=42 Identities=26% Similarity=0.244 Sum_probs=22.7
Q ss_pred hhhcCCCceeEEEeCCCCCc-cCCccccccccCCEEeeCCCCc
Q 044539 172 KICKMFNFLRVLDLGSLVLI-RYPSEVENLFLLRYLNLNIPSL 213 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~-~lP~~I~~L~~LryL~L~~t~i 213 (217)
..++++++|+.|+|+++.+. .+|..+++|.+|++|++++|.+
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 44455555555555555543 4555555555555555555544
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.13 E-value=0.00098 Score=50.23 Aligned_cols=83 Identities=20% Similarity=0.158 Sum_probs=25.8
Q ss_pred CCceeEEEEeCCCCc-ccccc-CCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcccc-ccccC
Q 044539 127 RENVKRFTAHGNLND-FEFLD-HFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVE-NLFLL 203 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~~~~-~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~-~L~~L 203 (217)
+.+.|.+.+.++... +.... .+. ++++|.+.++.-. .+ ..+..++.|+.|+++++.|+.+++.+. .+++|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~-~L~~L~Ls~N~I~----~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLD-KLEVLDLSNNQIT----KL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ------------------S--TT-T-T--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccchhhhhc-CCCEEECCCCCCc----cc--cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 345577777776655 33333 356 7888877766543 22 456678888888888888887766553 57888
Q ss_pred CEEeeCCCCcccC
Q 044539 204 RYLNLNIPSLKSL 216 (217)
Q Consensus 204 ryL~L~~t~i~~L 216 (217)
+.|.|++++|+++
T Consensus 91 ~~L~L~~N~I~~l 103 (175)
T PF14580_consen 91 QELYLSNNKISDL 103 (175)
T ss_dssp -EEE-TTS---SC
T ss_pred CEEECcCCcCCCh
Confidence 8888888877654
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.98 E-value=0.0016 Score=62.85 Aligned_cols=44 Identities=27% Similarity=0.301 Sum_probs=31.5
Q ss_pred hhcCCCceeEEEeCCCC-CccCCccccccccCCEEeeCCC-CcccC
Q 044539 173 ICKMFNFLRVLDLGSLV-LIRYPSEVENLFLLRYLNLNIP-SLKSL 216 (217)
Q Consensus 173 ~~~~l~~LrvLdL~~~~-i~~lP~~I~~L~~LryL~L~~t-~i~~L 216 (217)
.++.+++|+.|+|++|. +..+|.+|++|.+|++|++++| .++.+
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 35667777888887776 6678888888888888888775 34444
No 19
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.97 E-value=0.0012 Score=37.80 Aligned_cols=39 Identities=13% Similarity=-0.052 Sum_probs=30.3
Q ss_pred CeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCC
Q 044539 151 FLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYP 194 (217)
Q Consensus 151 ~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP 194 (217)
+|+.|.+.++.-. .++ ..++++++|++|+++++.++.+|
T Consensus 2 ~L~~L~l~~N~i~----~l~-~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQIT----DLP-PELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-S----SHG-GHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCc----ccC-chHhCCCCCCEEEecCCCCCCCc
Confidence 7888988877643 355 66999999999999999988665
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.89 E-value=0.0002 Score=63.25 Aligned_cols=46 Identities=24% Similarity=0.158 Sum_probs=23.8
Q ss_pred hhhcCCCceeEEEeCCCCCccCCcccc-ccccCCEEeeCCCCcccCC
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPSEVE-NLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~~I~-~L~~LryL~L~~t~i~~L~ 217 (217)
..+..-+++-||.|++++|+.+|.++. +|.-|=||||+++++..||
T Consensus 120 ~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP 166 (1255)
T KOG0444|consen 120 TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP 166 (1255)
T ss_pred hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence 334444455555555555555555444 5555555555555555544
No 21
>PLN03150 hypothetical protein; Provisional
Probab=96.82 E-value=0.0019 Score=58.31 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=47.6
Q ss_pred eeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCc-cCCccccccccCCEEeeCCCCcc
Q 044539 152 LHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLI-RYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 152 LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~-~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
++.|.+.++. ....+| ..+.++++|+.|+|+++.+. .+|++++.|.+|++|+|+++++.
T Consensus 420 v~~L~L~~n~---L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls 479 (623)
T PLN03150 420 IDGLGLDNQG---LRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479 (623)
T ss_pred EEEEECCCCC---ccccCC-HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC
Confidence 4555554433 223456 78899999999999999986 89999999999999999999876
No 22
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.73 E-value=0.00088 Score=56.26 Aligned_cols=43 Identities=28% Similarity=0.252 Sum_probs=40.8
Q ss_pred hhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcc
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
..++.|.+|..|||.++.+..+|+.+|++.+|+.|.|.|+.++
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 4589999999999999999999999999999999999999887
No 23
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.67 E-value=0.0011 Score=29.83 Aligned_cols=16 Identities=44% Similarity=0.397 Sum_probs=6.8
Q ss_pred cCCEEeeCCCCcccCC
Q 044539 202 LLRYLNLNIPSLKSLL 217 (217)
Q Consensus 202 ~LryL~L~~t~i~~L~ 217 (217)
+||.|+|++|++++||
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555554
No 24
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.51 E-value=0.0015 Score=29.40 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=11.4
Q ss_pred CceeEEEeCCCCCccCC
Q 044539 178 NFLRVLDLGSLVLIRYP 194 (217)
Q Consensus 178 ~~LrvLdL~~~~i~~lP 194 (217)
++||+|+|++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47899999999998877
No 25
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.49 E-value=0.0014 Score=59.67 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=37.9
Q ss_pred ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCC
Q 044539 145 LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIP 211 (217)
Q Consensus 145 ~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t 211 (217)
...+| .||+|.+.+.... .. .+. ..+.+|++|+.||++++.+..+ ..|++|+||+.|.+++-
T Consensus 144 g~~LP-sL~sL~i~~~~~~-~~-dF~-~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 144 GTMLP-SLRSLVISGRQFD-ND-DFS-QLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL 205 (699)
T ss_pred hhhCc-ccceEEecCceec-ch-hHH-HHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCC
Confidence 34567 7888877765432 11 122 5667777777777777776655 55666666666555543
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.16 E-value=0.011 Score=54.46 Aligned_cols=37 Identities=30% Similarity=0.316 Sum_probs=20.6
Q ss_pred ceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccCC
Q 044539 179 FLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 179 ~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
.|+.|+|+++.+..+|+.+. .+|++|+|++|+++.+|
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLP 299 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCCccccCc
Confidence 45555555555555555443 35666666666665543
No 27
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0035 Score=30.12 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=14.1
Q ss_pred cCCEEeeCCCCcccCC
Q 044539 202 LLRYLNLNIPSLKSLL 217 (217)
Q Consensus 202 ~LryL~L~~t~i~~L~ 217 (217)
+||+|+|++|+++++|
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 6899999999998765
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.63 E-value=0.021 Score=52.63 Aligned_cols=82 Identities=11% Similarity=0.036 Sum_probs=55.0
Q ss_pred CCCceeEEEEeCCCCccccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCE
Q 044539 126 LRENVKRFTAHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRY 205 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lry 205 (217)
.+...+.+.+..+..........+ +|++|.+.++.-. .+| ..+ ...|+.|+|++|.+..+|.++. .+|++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~~-nL~~L~Ls~N~Lt----sLP-~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~ 266 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQG-NIKTLYANSNQLT----SIP-ATL--PDTIQEMELSINRITELPERLP--SALQS 266 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhcc-CCCEEECCCCccc----cCC-hhh--hccccEEECcCCccCcCChhHh--CCCCE
Confidence 345677888877765422222346 8888888765432 233 322 2468888999888888888775 47889
Q ss_pred EeeCCCCcccCC
Q 044539 206 LNLNIPSLKSLL 217 (217)
Q Consensus 206 L~L~~t~i~~L~ 217 (217)
|++++++++.+|
T Consensus 267 L~Ls~N~L~~LP 278 (754)
T PRK15370 267 LDLFHNKISCLP 278 (754)
T ss_pred EECcCCccCccc
Confidence 999888887664
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.59 E-value=0.015 Score=53.70 Aligned_cols=37 Identities=24% Similarity=0.131 Sum_probs=33.2
Q ss_pred CceeEEEeCCCCCccCCccccccccCCEEeeCCCCcc
Q 044539 178 NFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 178 ~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
..|+.|+|+++++..+|+++++|.+|++|+|+++.+.
T Consensus 422 ~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 422 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 4678899999999999999999999999999999875
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.54 E-value=0.0038 Score=57.46 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=51.8
Q ss_pred ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCccc
Q 044539 145 LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 145 ~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~ 215 (217)
+-.++ +|+.|.+..+.. ..+| ...+++++|.+|.|.++.++.+|.++.+|++|+||+++++...-
T Consensus 64 it~l~-~L~~ln~s~n~i----~~vp-~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~ 128 (1081)
T KOG0618|consen 64 ITLLS-HLRQLNLSRNYI----RSVP-SSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGP 128 (1081)
T ss_pred hhhHH-HHhhcccchhhH----hhCc-hhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCC
Confidence 44456 777776554432 2456 88899999999999999999999999999999999999887644
No 31
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.79 E-value=0.025 Score=28.16 Aligned_cols=18 Identities=44% Similarity=0.349 Sum_probs=11.1
Q ss_pred cccCCEEeeCCCCcccCC
Q 044539 200 LFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 200 L~~LryL~L~~t~i~~L~ 217 (217)
|.+|++|+|++++|+.+|
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 345666666666666554
No 32
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.79 E-value=0.025 Score=28.16 Aligned_cols=18 Identities=44% Similarity=0.349 Sum_probs=11.1
Q ss_pred cccCCEEeeCCCCcccCC
Q 044539 200 LFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 200 L~~LryL~L~~t~i~~L~ 217 (217)
|.+|++|+|++++|+.+|
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 345666666666666554
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.77 E-value=0.0047 Score=56.84 Aligned_cols=44 Identities=32% Similarity=0.398 Sum_probs=19.7
Q ss_pred hhcCCCceeEEEeCCCCCccCCc-cccccccCCEEeeCCCCcccC
Q 044539 173 ICKMFNFLRVLDLGSLVLIRYPS-EVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 173 ~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~LryL~L~~t~i~~L 216 (217)
.+.++++||||+|+++.+..+|+ ...+|..|+-|+|+|+.++.|
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh
Confidence 34444444444444444444442 233444444444444444433
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.75 E-value=0.013 Score=47.73 Aligned_cols=45 Identities=24% Similarity=0.135 Sum_probs=29.4
Q ss_pred hhhcCCCceeEEEeCCCCCccCC--ccccccccCCEEeeCCCCcccC
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYP--SEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP--~~I~~L~~LryL~L~~t~i~~L 216 (217)
..+.++..|..||+++++|+.+- .+||+|+.|+.|.|.++.+..+
T Consensus 368 SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 44566667777777777766443 4677777777777777666544
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.63 E-value=0.023 Score=46.38 Aligned_cols=41 Identities=32% Similarity=0.236 Sum_probs=20.6
Q ss_pred hcCCCceeEEEeCCCCCc-----cCCccccccccCCEEeeCCCCcc
Q 044539 174 CKMFNFLRVLDLGSLVLI-----RYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 174 ~~~l~~LrvLdL~~~~i~-----~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
+..++.|++|+|++|.+. .++..+..+++|++|++++|.++
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 334445555555555543 23334445555555555555443
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.40 E-value=0.025 Score=48.02 Aligned_cols=38 Identities=34% Similarity=0.427 Sum_probs=19.0
Q ss_pred ceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccC
Q 044539 179 FLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 179 ~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L 216 (217)
+|+.|+++++.+..+|..++.+++|+.|+++.+++.++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l 178 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL 178 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhh
Confidence 45555555555555544455555555555555444433
No 37
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.39 E-value=0.029 Score=27.87 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=18.9
Q ss_pred CCceeEEEeCCCCCccCCcccc
Q 044539 177 FNFLRVLDLGSLVLIRYPSEVE 198 (217)
Q Consensus 177 l~~LrvLdL~~~~i~~lP~~I~ 198 (217)
+++|+.|+|++++++.+|..+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678999999999999998754
No 38
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.39 E-value=0.029 Score=27.87 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=18.9
Q ss_pred CCceeEEEeCCCCCccCCcccc
Q 044539 177 FNFLRVLDLGSLVLIRYPSEVE 198 (217)
Q Consensus 177 l~~LrvLdL~~~~i~~lP~~I~ 198 (217)
+++|+.|+|++++++.+|..+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4678999999999999998754
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.34 E-value=0.0077 Score=49.02 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=58.9
Q ss_pred CceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEE
Q 044539 128 ENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYL 206 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL 206 (217)
.++|++-+..+... ......++ +|.-|.+.++.-. ... ..-.++.+++.|.|.++.++.+ +.+++|..|.||
T Consensus 307 Pkir~L~lS~N~i~~v~nLa~L~-~L~~LDLS~N~Ls----~~~-Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnL 379 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTVQNLAELP-QLQLLDLSGNLLA----ECV-GWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNL 379 (490)
T ss_pred cceeEEeccccceeeehhhhhcc-cceEeecccchhH----hhh-hhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheec
Confidence 44577777666554 34455677 7777777765432 111 3335788899999999998876 579999999999
Q ss_pred eeCCCCcccC
Q 044539 207 NLNIPSLKSL 216 (217)
Q Consensus 207 ~L~~t~i~~L 216 (217)
|+++++|.+|
T Consensus 380 Dl~~N~Ie~l 389 (490)
T KOG1259|consen 380 DLSSNQIEEL 389 (490)
T ss_pred cccccchhhH
Confidence 9999998764
No 40
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.11 E-value=0.11 Score=48.10 Aligned_cols=25 Identities=4% Similarity=-0.150 Sum_probs=17.3
Q ss_pred HhHHHHHHHhhhcCCCCeecHHHHHHH
Q 044539 27 FYLKLCCLYLSVFLVYFEISTKQLYQL 53 (217)
Q Consensus 27 ~~lk~Cfl~~s~Fp~~~~i~~~~Li~~ 53 (217)
.+..+|..+++--|.+. .++++...
T Consensus 47 ~~a~~c~~~~~~~~~~~--~~~~~~~~ 71 (788)
T PRK15387 47 TEALECIWTICHPPAGT--TREDVINR 71 (788)
T ss_pred HHHHHHHHHHhCCCCCC--CHHHHHHH
Confidence 34788999988888765 46665543
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.81 E-value=0.036 Score=50.67 Aligned_cols=85 Identities=19% Similarity=0.112 Sum_probs=48.5
Q ss_pred CCceeEEEEeCCCCc---c-ccccCCCCCeeEEEEeCCCCCC-------------------CC--cccchhhhcCCCcee
Q 044539 127 RENVKRFTAHGNLND---F-EFLDHFDSFLHSLLHLTLGSHY-------------------LD--PNYCEKICKMFNFLR 181 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~---~-~~~~~~~~~LrsL~~~~~~~~~-------------------~~--~~l~~~~~~~l~~Lr 181 (217)
.+..|+|.+.+-... + .--..+| +|++|.+.+.+-.. .. ..+ ..+-++++||
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFp-NL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l--~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFP-NLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDL--IDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccC-ccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhH--HHHhcccCCC
Confidence 355678887764432 1 2234577 78888777654321 00 111 2345677788
Q ss_pred EEEeCCCCCccCCc-------cccccccCCEEeeCCCCcc
Q 044539 182 VLDLGSLVLIRYPS-------EVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 182 vLdL~~~~i~~lP~-------~I~~L~~LryL~L~~t~i~ 214 (217)
|||++...-..-|. .=..|++||+||.++|.+.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88887655333331 2234778888888887764
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=93.75 E-value=0.039 Score=45.04 Aligned_cols=83 Identities=16% Similarity=0.026 Sum_probs=51.0
Q ss_pred eeEEEEeCCCCc-------cccccCC-CCCeeEEEEeCCCCCC-CCcccchhhhcCCCceeEEEeCCCCCc-----cCCc
Q 044539 130 VKRFTAHGNLND-------FEFLDHF-DSFLHSLLHLTLGSHY-LDPNYCEKICKMFNFLRVLDLGSLVLI-----RYPS 195 (217)
Q Consensus 130 ~r~ls~~~~~~~-------~~~~~~~-~~~LrsL~~~~~~~~~-~~~~l~~~~~~~l~~LrvLdL~~~~i~-----~lP~ 195 (217)
.+++.+..+... ....... + +++.|.+.++.... ....+. ..+..+..|+.|+|+++.+. .++.
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPP-ALEKLVLGRNRLEGASCEALA-KALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCC-CceEEEcCCCcCCchHHHHHH-HHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 667777665433 1123344 6 78888877665321 001122 45667778888888888765 3445
Q ss_pred cccccccCCEEeeCCCCcc
Q 044539 196 EVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 196 ~I~~L~~LryL~L~~t~i~ 214 (217)
.+..+.+|++|++++|.+.
T Consensus 188 ~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHhCCCCCEEeccCCccC
Confidence 5556678888888888764
No 43
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.58 E-value=0.072 Score=42.31 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=46.9
Q ss_pred cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccc---cccccCCEEeeCCCCccc
Q 044539 142 FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEV---ENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 142 ~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I---~~L~~LryL~L~~t~i~~ 215 (217)
+.....++ +|+.|.++.+... ...-++ ....+.++|++|.|+++++.. ++++ -+|.+|..|++..|.++.
T Consensus 58 ~~~~P~Lp-~LkkL~lsdn~~~-~~~~l~-vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 58 LTNFPKLP-KLKKLELSDNYRR-VSGGLE-VLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cccCCCcc-hhhhhcccCCccc-ccccce-ehhhhCCceeEEeecCCcccc-ccccchhhhhcchhhhhcccCCccc
Confidence 44566777 8888888776332 112233 445666899999999988653 4444 466678888888887764
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.34 E-value=0.031 Score=47.41 Aligned_cols=62 Identities=23% Similarity=0.099 Sum_probs=45.9
Q ss_pred CeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccCC
Q 044539 151 FLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 151 ~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
+++.|.+.++... .++ ..+..++.|+.|+++.+++.++|...+.+..|+.|+++++++..+|
T Consensus 141 nL~~L~l~~N~i~----~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~ 202 (394)
T COG4886 141 NLKELDLSDNKIE----SLP-SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202 (394)
T ss_pred hcccccccccchh----hhh-hhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCc
Confidence 5666666554432 222 3577888888888888888888888888888888888888887765
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.32 E-value=0.024 Score=41.06 Aligned_cols=80 Identities=16% Similarity=0.033 Sum_probs=55.9
Q ss_pred EEEEeCCCCc-ccc--ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEee
Q 044539 132 RFTAHGNLND-FEF--LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNL 208 (217)
Q Consensus 132 ~ls~~~~~~~-~~~--~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L 208 (217)
.+++..+... ++. ...++ .+.+|.+.++.- ..+| ..+..++.||.|.++.+.+...|.-|..|++|-||+.
T Consensus 57 ~i~ls~N~fk~fp~kft~kf~-t~t~lNl~~nei----sdvP-eE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 57 KISLSDNGFKKFPKKFTIKFP-TATTLNLANNEI----SDVP-EELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred EEecccchhhhCCHHHhhccc-hhhhhhcchhhh----hhch-HHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 3455555443 222 33455 566666555433 2355 5588999999999999999999999999999999999
Q ss_pred CCCCcccCC
Q 044539 209 NIPSLKSLL 217 (217)
Q Consensus 209 ~~t~i~~L~ 217 (217)
.++.+.+++
T Consensus 131 ~~na~~eid 139 (177)
T KOG4579|consen 131 PENARAEID 139 (177)
T ss_pred CCCccccCc
Confidence 888776653
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.23 E-value=0.049 Score=46.75 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=40.7
Q ss_pred CCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccC
Q 044539 147 HFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 147 ~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L 216 (217)
.+. .+..+.+.++... . +. ..+..+.+|++|+|+++.|..+. .+..|..|+.|+++++.|+.+
T Consensus 93 ~~~-~l~~l~l~~n~i~---~-i~-~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~ 155 (414)
T KOG0531|consen 93 KLK-SLEALDLYDNKIE---K-IE-NLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDI 155 (414)
T ss_pred ccc-ceeeeeccccchh---h-cc-cchhhhhcchheecccccccccc-chhhccchhhheeccCcchhc
Confidence 344 5555555554321 1 11 22667888888888888877664 577777788888888877653
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.36 E-value=0.31 Score=41.76 Aligned_cols=78 Identities=17% Similarity=0.062 Sum_probs=41.2
Q ss_pred CCCceeEEEEeCCCCc--cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCC---CccCCcccccc
Q 044539 126 LRENVKRFTAHGNLND--FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLV---LIRYPSEVENL 200 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~--~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~---i~~lP~~I~~L 200 (217)
.|..++.|.+...... .+.. -.+ .|+.|.+.++.. . ..+| ..|+.|++.++. +..+|+++..|
T Consensus 70 LP~sLtsL~Lsnc~nLtsLP~~-LP~-nLe~L~Ls~Cs~--L-~sLP-------~sLe~L~L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 70 LPNELTEITIENCNNLTTLPGS-IPE-GLEKLTVCHCPE--I-SGLP-------ESVRSLEIKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred CCCCCcEEEccCCCCcccCCch-hhh-hhhheEccCccc--c-cccc-------cccceEEeCCCCCcccccCcchHhhe
Confidence 3455666666543221 1111 123 666666655422 1 1122 235556665544 56788777766
Q ss_pred c------------------cCCEEeeCCCCccc
Q 044539 201 F------------------LLRYLNLNIPSLKS 215 (217)
Q Consensus 201 ~------------------~LryL~L~~t~i~~ 215 (217)
. .|++|++++|....
T Consensus 138 ~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 138 SINSYNPENQARIDNLISPSLKTLSLTGCSNII 170 (426)
T ss_pred eccccccccccccccccCCcccEEEecCCCccc
Confidence 3 68888888776543
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.04 E-value=0.022 Score=50.07 Aligned_cols=45 Identities=22% Similarity=0.196 Sum_probs=29.8
Q ss_pred hhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccCC
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
..+..+..||.|.+..+++..+|++++.| -|..||+++++|..||
T Consensus 183 sql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iP 227 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLP 227 (722)
T ss_pred HHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecc
Confidence 55666666666666666666677766644 4666777777776665
No 49
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=91.57 E-value=0.12 Score=45.99 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=36.1
Q ss_pred hhhcCCCceeEEEeCCCCCccCCccccc-cccCCEEeeCCCCccc
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPSEVEN-LFLLRYLNLNIPSLKS 215 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~~I~~-L~~LryL~L~~t~i~~ 215 (217)
..|.++..|-+|.|+.++++.+|..+.+ |.+|+.|+|..+.|+.
T Consensus 191 ~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 191 GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 6677888888899998888888876665 9999999998887753
No 50
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=91.21 E-value=0.3 Score=43.53 Aligned_cols=61 Identities=16% Similarity=-0.019 Sum_probs=39.7
Q ss_pred CeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCccc
Q 044539 151 FLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 151 ~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~ 215 (217)
..++|.+.++.-. ++-. .+|-++.+|+.+.+..+.++.+|.-++..-||+.|+|+++.|++
T Consensus 79 ~t~~LdlsnNkl~---~id~-~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s 139 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS---HIDF-EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISS 139 (873)
T ss_pred ceeeeeccccccc---cCcH-HHHhcCCcceeeeeccchhhhcccccccccceeEEeeecccccc
Confidence 6677777665432 1222 56677777777777777777777766666677777777766654
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.81 E-value=0.15 Score=43.72 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=59.2
Q ss_pred CCceeEEEEeCCCCc-ccc-ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCC
Q 044539 127 RENVKRFTAHGNLND-FEF-LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLR 204 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~~-~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lr 204 (217)
......+.+..+... +.. ...++ +|+.|.+.++... .+ ..+..+..|+.|++++|.|..++ .+..|+.|+
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~-~L~~L~ls~N~I~----~i--~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLV-NLQVLDLSFNKIT----KL--EGLSTLTLLKELNLSGNLISDIS-GLESLKSLK 165 (414)
T ss_pred ccceeeeeccccchhhcccchhhhh-cchheeccccccc----cc--cchhhccchhhheeccCcchhcc-CCccchhhh
Confidence 455666777666655 444 56688 9999988876543 11 55677777999999999987665 455689999
Q ss_pred EEeeCCCCcccC
Q 044539 205 YLNLNIPSLKSL 216 (217)
Q Consensus 205 yL~L~~t~i~~L 216 (217)
+|+++++.|+.+
T Consensus 166 ~l~l~~n~i~~i 177 (414)
T KOG0531|consen 166 LLDLSYNRIVDI 177 (414)
T ss_pred cccCCcchhhhh
Confidence 999999887654
No 52
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=90.48 E-value=0.14 Score=43.38 Aligned_cols=49 Identities=24% Similarity=0.107 Sum_probs=31.2
Q ss_pred ccchhhhcCCCceeEEEeCCCCCc-cCCccccccccCCEEeeCC-CCcccCC
Q 044539 168 NYCEKICKMFNFLRVLDLGSLVLI-RYPSEVENLFLLRYLNLNI-PSLKSLL 217 (217)
Q Consensus 168 ~l~~~~~~~l~~LrvLdL~~~~i~-~lP~~I~~L~~LryL~L~~-t~i~~L~ 217 (217)
+.+ ..|+.++.||.|||+.+.|+ --|+.+..|..|-.|-+-+ ++|++||
T Consensus 82 iP~-~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 82 IPP-GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCh-hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 444 77777777777777777766 3355566666555555544 6666654
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.47 E-value=0.3 Score=41.88 Aligned_cols=64 Identities=11% Similarity=-0.043 Sum_probs=39.6
Q ss_pred CceeEEEEeCCCCccccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCC-CCccCCccccc
Q 044539 128 ENVKRFTAHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSL-VLIRYPSEVEN 199 (217)
Q Consensus 128 ~~~r~ls~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~-~i~~lP~~I~~ 199 (217)
...++|.+...... ....+|..|++|.+.++.. ...+| ..+ ...|+.|++++| .+..+|+++..
T Consensus 52 ~~l~~L~Is~c~L~--sLP~LP~sLtsL~Lsnc~n---LtsLP-~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~ 116 (426)
T PRK15386 52 RASGRLYIKDCDIE--SLPVLPNELTEITIENCNN---LTTLP-GSI--PEGLEKLTVCHCPEISGLPESVRS 116 (426)
T ss_pred cCCCEEEeCCCCCc--ccCCCCCCCcEEEccCCCC---cccCC-chh--hhhhhheEccCcccccccccccce
Confidence 34567777765332 2224554799998877544 12333 333 257899999998 58888876433
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=0.099 Score=44.63 Aligned_cols=85 Identities=19% Similarity=0.038 Sum_probs=57.8
Q ss_pred CCceeEEEEeCCCCccc----cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc--cccc
Q 044539 127 RENVKRFTAHGNLNDFE----FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE--VENL 200 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~~~----~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~--I~~L 200 (217)
.++.|.+++........ -...++ ++|.|.+..+-.. ....+. .+...+++|+.|.|+.+.+...-++ -+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~-~v~~LdLS~NL~~-nw~~v~-~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILP-NVRDLDLSRNLFH-NWFPVL-KIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCC-cceeecchhhhHH-hHHHHH-HHHHhcccchhcccccccccCCccccchhhh
Confidence 34556666655544321 356788 9999988776543 222334 7888999999999999886522222 2367
Q ss_pred ccCCEEeeCCCCcc
Q 044539 201 FLLRYLNLNIPSLK 214 (217)
Q Consensus 201 ~~LryL~L~~t~i~ 214 (217)
.||+.|.|+.|++.
T Consensus 197 ~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLS 210 (505)
T ss_pred hhhheEEeccCCCC
Confidence 89999999999875
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=89.99 E-value=0.21 Score=44.21 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=22.4
Q ss_pred eeEEEeCCCCCccCCccccccccCCEEeeCCCCcc
Q 044539 180 LRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 180 LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
|.-||++++++..+|-++.+|.||+||-|.++.+.
T Consensus 213 Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 44566666666666666666666666666665543
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=89.38 E-value=0.38 Score=39.98 Aligned_cols=43 Identities=26% Similarity=0.204 Sum_probs=32.5
Q ss_pred hhhcCCCceeEEEeCCCCCc-----cCCccccccccCCEEeeCCCCcc
Q 044539 172 KICKMFNFLRVLDLGSLVLI-----RYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~-----~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
..+..+++||||||..+.++ .+-+-++.++|||-|+++.|.++
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 66788888888888887754 34455667788888888888765
No 57
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.97 E-value=0.31 Score=24.37 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=9.2
Q ss_pred cccCCEEeeCCCCccc
Q 044539 200 LFLLRYLNLNIPSLKS 215 (217)
Q Consensus 200 L~~LryL~L~~t~i~~ 215 (217)
|.+|+.|+|+++.|+.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3456666666665554
No 58
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=87.71 E-value=0.35 Score=41.01 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=31.0
Q ss_pred eEEEeCCCCCccCCc-cccccccCCEEeeCCCCcccC
Q 044539 181 RVLDLGSLVLIRYPS-EVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 181 rvLdL~~~~i~~lP~-~I~~L~~LryL~L~~t~i~~L 216 (217)
.-++|+.++|+.+|+ .++.|++||-||||.++|+.+
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I 106 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI 106 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhc
Confidence 457899999999995 667999999999999999764
No 59
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=87.36 E-value=0.17 Score=43.26 Aligned_cols=32 Identities=16% Similarity=-0.006 Sum_probs=15.7
Q ss_pred CceeEEEEeCCCCc----cccccCCCCCeeEEEEeCC
Q 044539 128 ENVKRFTAHGNLND----FEFLDHFDSFLHSLLHLTL 160 (217)
Q Consensus 128 ~~~r~ls~~~~~~~----~~~~~~~~~~LrsL~~~~~ 160 (217)
....+|.+.+.... ......+| .+..|.+.++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fP-sl~~L~L~~N 232 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFP-SLEVLYLEAN 232 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCC-cHHHhhhhcc
Confidence 34556666555443 11233455 5555555554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=86.82 E-value=1.1 Score=34.75 Aligned_cols=36 Identities=19% Similarity=0.038 Sum_probs=15.4
Q ss_pred hcCCCceeEEEeCCCCCccCCc----cccccccCCEEeeC
Q 044539 174 CKMFNFLRVLDLGSLVLIRYPS----EVENLFLLRYLNLN 209 (217)
Q Consensus 174 ~~~l~~LrvLdL~~~~i~~lP~----~I~~L~~LryL~L~ 209 (217)
+..++.|+.|.+-++.+++.+. -|.++++||.||.+
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 3334444444444444332221 23444555555543
No 61
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.81 E-value=0.33 Score=23.44 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=8.3
Q ss_pred ccCCEEeeCCCCcc
Q 044539 201 FLLRYLNLNIPSLK 214 (217)
Q Consensus 201 ~~LryL~L~~t~i~ 214 (217)
++|++|+|++|.|.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56777777777664
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.66 E-value=0.44 Score=37.95 Aligned_cols=44 Identities=20% Similarity=0.113 Sum_probs=35.3
Q ss_pred hhhcCCCceeEEEeCCC--CCc-cCCccccccccCCEEeeCCCCccc
Q 044539 172 KICKMFNFLRVLDLGSL--VLI-RYPSEVENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~--~i~-~lP~~I~~L~~LryL~L~~t~i~~ 215 (217)
..+..+++|+.|+++.+ ++. .++-...++++|++|++++++|+-
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 45667889999999998 433 666666677999999999999873
No 63
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.19 E-value=0.49 Score=23.64 Aligned_cols=16 Identities=38% Similarity=0.353 Sum_probs=9.4
Q ss_pred cCCEEeeCCCCcccCC
Q 044539 202 LLRYLNLNIPSLKSLL 217 (217)
Q Consensus 202 ~LryL~L~~t~i~~L~ 217 (217)
+|++|+++++++++||
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 4556666666665554
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.45 E-value=0.12 Score=40.69 Aligned_cols=45 Identities=7% Similarity=-0.251 Sum_probs=40.4
Q ss_pred ccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCc
Q 044539 168 NYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSL 213 (217)
Q Consensus 168 ~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i 213 (217)
++| ..+++...++-+++..+..+.+|.|.++++|+||+++.+|.+
T Consensus 79 ~~~-~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 79 FLP-KDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hCh-hhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 566 778888899999999999999999999999999999998864
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.98 E-value=0.68 Score=38.01 Aligned_cols=13 Identities=38% Similarity=0.337 Sum_probs=6.6
Q ss_pred CCceeEEEeCCCC
Q 044539 177 FNFLRVLDLGSLV 189 (217)
Q Consensus 177 l~~LrvLdL~~~~ 189 (217)
.++||+|-|.|+.
T Consensus 120 ~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 120 LKNLRVLVLNGTG 132 (418)
T ss_pred ccceEEEEEcCCC
Confidence 3455555555544
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=81.93 E-value=0.31 Score=35.43 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=23.3
Q ss_pred hhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcc
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
.+..++.-+..|.|+++.|.++|.++..+.-||.|+++.+.+.
T Consensus 71 kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 71 KFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred HHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc
Confidence 3444444555555555555555555555555555555555443
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.88 E-value=0.67 Score=35.72 Aligned_cols=65 Identities=22% Similarity=0.063 Sum_probs=40.8
Q ss_pred ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCC-Ccc-CCccccccccCCEEeeCC
Q 044539 143 EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLV-LIR-YPSEVENLFLLRYLNLNI 210 (217)
Q Consensus 143 ~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~-i~~-lP~~I~~L~~LryL~L~~ 210 (217)
....+++ .+++|.+.++..- ....+. ..-.-..+|+.|+|++|. |++ =...+.+|++||-|.|++
T Consensus 119 e~L~~l~-~i~~l~l~~ck~~-dD~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 119 EHLRDLR-SIKSLSLANCKYF-DDWCLE-RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhccc-hhhhheeccccch-hhHHHH-HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3455666 6777766655431 111122 222356789999999998 662 235678889999988875
No 68
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.45 E-value=1.7 Score=21.90 Aligned_cols=14 Identities=36% Similarity=0.252 Sum_probs=8.6
Q ss_pred ccCCEEeeCCCCcc
Q 044539 201 FLLRYLNLNIPSLK 214 (217)
Q Consensus 201 ~~LryL~L~~t~i~ 214 (217)
++|++|+|+++.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666777666553
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=75.85 E-value=0.44 Score=43.62 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=25.1
Q ss_pred hhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccC
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L 216 (217)
..+.-++.|+.|+|+.|++.+.- .|..|.+|++|||+.+.++.+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~v 224 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHV 224 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccc
Confidence 44555556666666666655443 555666666666665554443
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.12 E-value=3.3 Score=34.17 Aligned_cols=61 Identities=23% Similarity=0.037 Sum_probs=40.3
Q ss_pred CCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCc----cCCccccccccCCEEeeCCCCcc
Q 044539 148 FDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLI----RYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 148 ~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~----~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
+. +++-+.+-++..+ -+..+. .++.+++.|++|.|+.+++. .+| -.+++||.|-|.||.+.
T Consensus 70 ~~-~v~elDL~~N~iS-dWseI~-~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 70 VT-DVKELDLTGNLIS-DWSEIG-AILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hh-hhhhhhcccchhc-cHHHHH-HHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCC
Confidence 44 6666666554432 122233 67888999999999888743 444 46678899888887653
No 71
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=72.98 E-value=3.2 Score=32.20 Aligned_cols=69 Identities=19% Similarity=0.120 Sum_probs=49.0
Q ss_pred cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCC--ccccccccCCEEeeCCCCccc
Q 044539 142 FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYP--SEVENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 142 ~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP--~~I~~L~~LryL~L~~t~i~~ 215 (217)
...+..++ .|.||.+.++.... +-| ..-..+.+|.+|.|.+++|.++- +-+..++.|+||.+-++.+..
T Consensus 57 l~~lp~l~-rL~tLll~nNrIt~---I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 57 LDNLPHLP-RLHTLLLNNNRITR---IDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred cccCCCcc-ccceEEecCCccee---ecc-chhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 44567788 99999887776532 222 33345667999999999977543 345577899999999888764
No 72
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=71.65 E-value=0.51 Score=43.25 Aligned_cols=33 Identities=33% Similarity=0.352 Sum_probs=20.9
Q ss_pred eeEEEeCCCCCccCCccccccccCCEEeeCCCCc
Q 044539 180 LRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSL 213 (217)
Q Consensus 180 LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i 213 (217)
|.+|.|++|.++.|- .|.+|++|+.||++.+-+
T Consensus 234 L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred heeeeecccHHHhhh-hHHhhhhhhccchhHhhh
Confidence 566666666655543 467777777777776543
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.09 E-value=0.51 Score=38.34 Aligned_cols=39 Identities=23% Similarity=0.089 Sum_probs=19.5
Q ss_pred hhhcCCCceeEEEeCCCCCccCC--ccccccccCCEEeeCC
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYP--SEVENLFLLRYLNLNI 210 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP--~~I~~L~~LryL~L~~ 210 (217)
..+..++.|+-|.|..+.|..+- .-+.+|+.||.|+|..
T Consensus 57 ~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 57 APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 33444555555555554444332 2334556667776654
No 74
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=65.86 E-value=18 Score=23.58 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 46 STKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 46 ~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
.=.++|.+.+..|.+.. .+.|-.+-+.|++.|+|..+..
T Consensus 32 ~GselVdWL~~~~~~~s--R~eAv~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 32 CGCDLVSWLIEVGLAQD--RGEAVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred cHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCC
Confidence 45678997777787766 5678888999999999998764
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=63.48 E-value=1 Score=37.08 Aligned_cols=34 Identities=9% Similarity=-0.132 Sum_probs=18.3
Q ss_pred ccccchHh-HHHHHHHhhhcCCCCeecHHHHHHHHHHc
Q 044539 21 AYCMLHFY-LKLCCLYLSVFLVYFEISTKQLYQLWIAE 57 (217)
Q Consensus 21 sY~~Lp~~-lk~Cfl~~s~Fp~~~~i~~~~Li~~Wiae 57 (217)
+++.||++ +-..| ++.|+......--+-++|-..
T Consensus 97 ~~~slpDEill~IF---s~L~kk~LL~~~~VC~Rfyr~ 131 (419)
T KOG2120|consen 97 SWDSLPDEILLGIF---SCLCKKELLKVSGVCKRFYRL 131 (419)
T ss_pred CcccCCHHHHHHHH---HhccHHHHHHHHHHHHHHhhc
Confidence 57888888 55555 334444434444444555443
No 76
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=61.45 E-value=37 Score=21.09 Aligned_cols=42 Identities=19% Similarity=0.357 Sum_probs=32.7
Q ss_pred eecHHHHHHHHHH--cCCCCCChHHHHHHHHHHHHhCCCccceecC
Q 044539 44 EISTKQLYQLWIA--EGFIPDNNEAIAERYLEQLINGGFVDVGKKS 87 (217)
Q Consensus 44 ~i~~~~Li~~Wia--eG~i~~~~e~~~~~~~~~L~~r~l~~~~~~~ 87 (217)
.|.=.++|.+-+. +|++.. .+.|...-++|++.++|+.+...
T Consensus 17 ~F~G~e~v~WL~~~~~~~~~~--r~eA~~l~q~Ll~~g~i~~v~~~ 60 (74)
T PF00610_consen 17 CFTGSEAVDWLMDNFEGFVRD--REEAVQLGQELLDHGFIEHVSDK 60 (74)
T ss_dssp EEEHHHHHHHHHHTSCTSTSS--HHHHHHHHHHHHHCTSEEESSSS
T ss_pred EeEhHHHHHHHHHhccccccC--HHHHHHHHHHHHHCCCEEECCCC
Confidence 3566778887776 676766 77788888999999999987653
No 77
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=60.84 E-value=27 Score=22.91 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 47 TKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 47 ~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
=.++|.|.+..|.+.. .+.|-.+-+.|++.++|+.+..
T Consensus 35 GsElVdWL~~~~~~~s--R~eAv~lgq~Ll~~gii~HV~~ 72 (85)
T cd04441 35 GSEFIDWLLQEGEAES--RREAVQLCRRLLEHGIIQHVSN 72 (85)
T ss_pred chHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCC
Confidence 3578888888886655 6778889999999999998764
No 78
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=60.57 E-value=27 Score=23.37 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 47 TKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 47 ~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
-.+||.|.++.|-+.+ .+.|..+-+.|++.|+++-+..
T Consensus 40 GsElVdWLi~~g~~~t--R~eAv~~gq~Ll~~gii~HV~~ 77 (93)
T cd04440 40 ASKLVDWLLAQGDCRT--REEAVILGVGLCNNGFMHHVLE 77 (93)
T ss_pred hhHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCEEecCC
Confidence 3578999999988776 6778889999999999998764
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.10 E-value=6.1 Score=19.26 Aligned_cols=14 Identities=29% Similarity=0.171 Sum_probs=10.5
Q ss_pred ccCCEEeeCCCC-cc
Q 044539 201 FLLRYLNLNIPS-LK 214 (217)
Q Consensus 201 ~~LryL~L~~t~-i~ 214 (217)
++|++|+|++|. |+
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 578889998874 53
No 80
>PF14162 YozD: YozD-like protein
Probab=59.96 E-value=13 Score=21.76 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=19.5
Q ss_pred HcCCCCCC--hHHHHHHHHHHHHhCCCccc
Q 044539 56 AEGFIPDN--NEAIAERYLEQLINGGFVDV 83 (217)
Q Consensus 56 aeG~i~~~--~e~~~~~~~~~L~~r~l~~~ 83 (217)
.-||++.. .++.|.--|+-|+.+|++..
T Consensus 23 kRGyvP~e~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 23 KRGYVPTEEELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HccCCCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34777766 66777777777777777653
No 81
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=59.66 E-value=29 Score=22.44 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceecC
Q 044539 47 TKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKKS 87 (217)
Q Consensus 47 ~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~~ 87 (217)
=.++|.+-+..|-+.. .+.|..+-+.|++.++|+++...
T Consensus 31 GselVdWL~~~~~~~~--R~eAv~~gq~Ll~~g~i~hV~~~ 69 (81)
T cd04448 31 GKELVNWLIRQGKAAT--RVQAIAIGQALLDAGWIECVSDD 69 (81)
T ss_pred hHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCCC
Confidence 3578888888877655 56788888999999999998643
No 82
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=55.15 E-value=2.5 Score=35.38 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=22.1
Q ss_pred cccCCCCCeeEEEEeCCCCCCC-CcccchhhhcCCCceeEEEeCCCC
Q 044539 144 FLDHFDSFLHSLLHLTLGSHYL-DPNYCEKICKMFNFLRVLDLGSLV 189 (217)
Q Consensus 144 ~~~~~~~~LrsL~~~~~~~~~~-~~~l~~~~~~~l~~LrvLdL~~~~ 189 (217)
....++ +|+.|.+.++-.... ...+. ..++.+++||+|.++.|-
T Consensus 208 al~~~~-~LevLdl~DNtft~egs~~La-kaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 208 ALEHCP-HLEVLDLRDNTFTLEGSVALA-KALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHhCC-cceeeecccchhhhHHHHHHH-HHhcccchheeecccccc
Confidence 355667 777777665433200 01222 445555555665555554
No 83
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=51.42 E-value=25 Score=24.30 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceecCC
Q 044539 48 KQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKKSD 88 (217)
Q Consensus 48 ~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~~~ 88 (217)
..+|.|.|.++.... .+.|..+=+.|++.++|+++....
T Consensus 35 se~VDWLv~~~~~i~--R~EAv~l~q~Lmd~gli~hV~~~s 73 (109)
T cd04444 35 SALVDWLISNSFAAS--RLEAVTLASMLMEENFLRPVGVRS 73 (109)
T ss_pred hHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCchhhHHHHh
Confidence 467888888888775 566777889999999999987543
No 84
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=50.55 E-value=54 Score=21.22 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 46 STKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 46 ~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
.=.++|.+-+..|.+.. .+.|-.+-+.|++.|+|..+..
T Consensus 30 ~GselVdWL~~~~~~~~--r~eAv~lg~~Ll~~G~i~HV~~ 68 (81)
T cd04439 30 LGNEFVSWLLEIGEISK--PEEGVNLGQALLENGIIHHVSD 68 (81)
T ss_pred EhHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEecCC
Confidence 45678887777777765 4567888899999999998764
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=50.53 E-value=38 Score=32.10 Aligned_cols=82 Identities=16% Similarity=0.018 Sum_probs=54.5
Q ss_pred HHHHHHHHc-cccchHhHHHHHHHhhhcCCCCeecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceecCCCCC
Q 044539 13 ELRGLQVVA-YCMLHFYLKLCCLYLSVFLVYFEISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKKSDRGR 91 (217)
Q Consensus 13 ~i~~~l~ls-Y~~Lp~~lk~Cfl~~s~Fp~~~~i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~~~~~~ 91 (217)
.+...+.-. ++.||.+.+..++..|+++ .++.+ +...-. | .+.+...+++|.+.+++..... +.
T Consensus 250 ~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~~l~--~------~~~~~~~L~~l~~~~l~~~~~~---~~ 314 (903)
T PRK04841 250 HLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIVRVT--G------EENGQMRLEELERQGLFIQRMD---DS 314 (903)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHHHHc--C------CCcHHHHHHHHHHCCCeeEeec---CC
Confidence 344444333 7899999999999999987 34433 222111 2 1235788999999999753221 11
Q ss_pred eeEEEeChhHHHHHHHhh
Q 044539 92 INTCSIPGRCSLALLTGA 109 (217)
Q Consensus 92 ~~~~~mhdlv~dla~~i~ 109 (217)
...|+.|++++++.....
T Consensus 315 ~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 315 GEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCEEehhHHHHHHHHHHH
Confidence 136889999999998764
No 86
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=48.90 E-value=57 Score=20.36 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=31.8
Q ss_pred ecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 45 ISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 45 i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
|.-.++|.+-+..+.+.. .+.|..+-+.|++.++|.++..
T Consensus 21 F~G~e~v~wL~~~~~~~~--r~eA~~l~~~ll~~g~i~~v~~ 60 (77)
T smart00049 21 FTGSELVDWLMDNLEIID--REEAVHLGQLLLDEGLIHHVNG 60 (77)
T ss_pred eEcHHHHHHHHHcCCcCC--HHHHHHHHHHHHHCCCEEEeCC
Confidence 456678887777777655 6778888899999999999874
No 87
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=48.51 E-value=50 Score=21.50 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 48 KQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 48 ~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
.++|.+-+..|.+.+ .+.|..+-+.|++.++|+.+..
T Consensus 32 selVdWL~~~~~~~s--R~eAv~lgq~Ll~~gvi~HV~~ 68 (82)
T cd04442 32 KELIDWLIEHKEASD--RETAIKIMQKLLDHSIIHHVCD 68 (82)
T ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCEEeccC
Confidence 468888888887654 6678889999999999998753
No 88
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=45.27 E-value=14 Score=30.66 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=16.6
Q ss_pred hhcCCCceeEEEeCCCC-Cc-cCCccccccccCCEEeeCC
Q 044539 173 ICKMFNFLRVLDLGSLV-LI-RYPSEVENLFLLRYLNLNI 210 (217)
Q Consensus 173 ~~~~l~~LrvLdL~~~~-i~-~lP~~I~~L~~LryL~L~~ 210 (217)
.|-+|++|..|.|+.|- |. +---.++..+.|.||++.|
T Consensus 333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence 34445555555555444 11 1111233444555555544
No 89
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=37.06 E-value=13 Score=18.52 Aligned_cols=14 Identities=29% Similarity=0.240 Sum_probs=9.6
Q ss_pred ccccccCCEEeeCC
Q 044539 197 VENLFLLRYLNLNI 210 (217)
Q Consensus 197 I~~L~~LryL~L~~ 210 (217)
|..|++|++||...
T Consensus 9 i~~LPqL~~LD~~~ 22 (26)
T smart00446 9 IRLLPQLRKLDXXX 22 (26)
T ss_pred HHHCCccceecccc
Confidence 45677888887654
No 90
>PF08362 TetR_C_3: YcdC-like protein, C-terminal region; InterPro: IPR013573 This entry represents the C-terminal domain found in the hypothetical transcriptional regulators RutR and YcdC (P75899 from SWISSPROT) from Escherichia coli. Both of these proteins are member of the TetR (tetracycline resistance) transcriptional regulator family of proteins. RutR negatively controls the transcription of the rut operon involved in pyrimidine utilization. The C-terminal domains of RutR, YsiA and TetR share a multi-helical, interlocking structure. These proteins also contain helix-turn-helix (HTH) DNA-binding domains.; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 3LOC_B.
Probab=33.95 E-value=70 Score=23.20 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHcCCCCCC
Q 044539 46 STKQLYQLWIAEGFIPDN 63 (217)
Q Consensus 46 ~~~~Li~~WiaeG~i~~~ 63 (217)
.+-.+|+.|+++|-+.+.
T Consensus 71 ~~~~~I~~Wi~~G~i~~v 88 (143)
T PF08362_consen 71 RKVAVIERWIAQGKIAPV 88 (143)
T ss_dssp HHHHHHHHHHHTTSS-S-
T ss_pred HHHHHHHHHHHCCCCCCC
Confidence 567899999999999765
No 91
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=33.78 E-value=4 Score=32.48 Aligned_cols=66 Identities=14% Similarity=-0.031 Sum_probs=46.2
Q ss_pred cCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccCC
Q 044539 146 DHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 146 ~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
..+. ....|.+..+... .+. ..|+.++.|.-||++.+.+..+|++.+++..++.+++..+..+.+|
T Consensus 39 ~~~k-r~tvld~~s~r~v----n~~-~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 39 ASFK-RVTVLDLSSNRLV----NLG-KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP 104 (326)
T ss_pred hccc-eeeeehhhhhHHH----hhc-cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC
Confidence 3344 5555555443321 233 5567778888899998889999999999999999888777665544
No 92
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=33.18 E-value=24 Score=31.15 Aligned_cols=16 Identities=31% Similarity=0.359 Sum_probs=14.9
Q ss_pred ccccchHhHHHHHHHh
Q 044539 21 AYCMLHFYLKLCCLYL 36 (217)
Q Consensus 21 sY~~Lp~~lk~Cfl~~ 36 (217)
||+.|..+.|.|+||+
T Consensus 7 Sl~~LS~EEkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSAEEKECLLFL 22 (497)
T ss_pred cccccchhhHHHHHHH
Confidence 8999999999999985
No 93
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.18 E-value=3.2 Score=33.91 Aligned_cols=15 Identities=33% Similarity=0.200 Sum_probs=7.4
Q ss_pred hhcCCCceeEEEeCC
Q 044539 173 ICKMFNFLRVLDLGS 187 (217)
Q Consensus 173 ~~~~l~~LrvLdL~~ 187 (217)
-+++++.||+|=|..
T Consensus 83 YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhcCchhhhHhhcc
Confidence 344555555554443
No 94
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=30.20 E-value=57 Score=27.16 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=34.9
Q ss_pred ccchHhHHHHHHHhhhcCCCCeecHHHHHHHHHHcCCCCCC
Q 044539 23 CMLHFYLKLCCLYLSVFLVYFEISTKQLYQLWIAEGFIPDN 63 (217)
Q Consensus 23 ~~Lp~~lk~Cfl~~s~Fp~~~~i~~~~Li~~WiaeG~i~~~ 63 (217)
.++.+..|.-+++.-.|-+.-...-..+...|.++|..++.
T Consensus 126 K~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~nGt~~~t 166 (412)
T KOG2297|consen 126 KNFENEMRKFLLFLKLFEENERKKLAMLTALLLSNGTLPAT 166 (412)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34567799999999999999888888888999999999664
No 95
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=29.56 E-value=1.4e+02 Score=20.23 Aligned_cols=74 Identities=16% Similarity=0.099 Sum_probs=34.7
Q ss_pred ceeEEEEeCCCCcc--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-cccccccCCE
Q 044539 129 NVKRFTAHGNLNDF--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLFLLRY 205 (217)
Q Consensus 129 ~~r~ls~~~~~~~~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~Lry 205 (217)
..+.+.+......+ .....++ .++.+.+.+... ..-+ ..|...+.|+.+++... +..+++ .+.+. +|+.
T Consensus 36 ~l~~i~~~~~~~~i~~~~F~~~~-~l~~i~~~~~~~----~i~~-~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~ 107 (129)
T PF13306_consen 36 SLKSINFPNNLTSIGDNAFSNCK-SLESITFPNNLK----SIGD-NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE 107 (129)
T ss_dssp T-SEEEESSTTSCE-TTTTTT-T-T-EEEEETSTT-----EE-T-TTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred ccccccccccccccceeeeeccc-cccccccccccc----cccc-ccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence 45666665543332 2355566 677777744221 1222 56777778888888653 444443 33444 6677
Q ss_pred EeeCC
Q 044539 206 LNLNI 210 (217)
Q Consensus 206 L~L~~ 210 (217)
+.+..
T Consensus 108 i~~~~ 112 (129)
T PF13306_consen 108 INIPS 112 (129)
T ss_dssp EE-TT
T ss_pred EEECC
Confidence 66653
No 96
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=28.86 E-value=1.6e+02 Score=19.81 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHhCCCccceecCCCCCeeEEEeChhHHHH
Q 044539 64 NEAIAERYLEQLINGGFVDVGKKSDRGRINTCSIPGRCSLA 104 (217)
Q Consensus 64 ~e~~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~mhdlv~dl 104 (217)
-...|..|+++|+++|++...+.+ +-+.|..=+-=.+|
T Consensus 44 ny~~~~~yi~~L~~~Gli~~~~~~---~~~~y~lT~KG~~f 81 (95)
T COG3432 44 NYKRAQKYIEMLVEKGLIIKQDNG---RRKVYELTEKGKRF 81 (95)
T ss_pred CHHHHHHHHHHHHhCCCEEeccCC---ccceEEEChhHHHH
Confidence 678999999999999977765543 22345554443333
No 97
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=28.73 E-value=1.8e+02 Score=27.74 Aligned_cols=75 Identities=16% Similarity=-0.020 Sum_probs=55.6
Q ss_pred cccchHhHHHHHHHhhhcCCCCeecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceecCCCCCeeEEEeChhH
Q 044539 22 YCMLHFYLKLCCLYLSVFLVYFEISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKKSDRGRINTCSIPGRC 101 (217)
Q Consensus 22 Y~~Lp~~lk~Cfl~~s~Fp~~~~i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~mhdlv 101 (217)
.|.||+++|.-++-||+++.=. +.|+..-.++ +-|...+++|-++++|-..-. +....|+.|.+.
T Consensus 266 ld~Lp~~l~~FLl~~svl~~f~----~eL~~~Ltg~--------~ng~amLe~L~~~gLFl~~Ld---d~~~WfryH~LF 330 (894)
T COG2909 266 LDRLPPELRDFLLQTSVLSRFN----DELCNALTGE--------ENGQAMLEELERRGLFLQRLD---DEGQWFRYHHLF 330 (894)
T ss_pred HhcCCHHHHHHHHHHHhHHHhh----HHHHHHHhcC--------CcHHHHHHHHHhCCCceeeec---CCCceeehhHHH
Confidence 5789999999999999997732 4556554443 448889999999999864221 122579999999
Q ss_pred HHHHHHhhcc
Q 044539 102 SLALLTGAFE 111 (217)
Q Consensus 102 ~dla~~i~~~ 111 (217)
.||.+.--+.
T Consensus 331 aeFL~~r~~~ 340 (894)
T COG2909 331 AEFLRQRLQR 340 (894)
T ss_pred HHHHHhhhcc
Confidence 9998765444
No 98
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=28.39 E-value=1.5e+02 Score=18.41 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=30.5
Q ss_pred ecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 45 ISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 45 i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
|.=.+++.+-+..+-... .+.|..+-+.|++.++|+.+..
T Consensus 29 F~G~e~v~WL~~~~~~~~--r~ea~~~~~~ll~~g~i~~v~~ 68 (81)
T cd04371 29 FTGSELVDWLLDNLEAIT--REEAVELGQALLKHGLIHHVSD 68 (81)
T ss_pred eEcHHHHHHHHHhCCCCC--HHHHHHHHHHHHHCCCEEEeCC
Confidence 455677777777665544 6778888899999999998864
No 99
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=27.69 E-value=1.4e+02 Score=17.73 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCccceecCCCCCeeEEE
Q 044539 65 EAIAERYLEQLINGGFVDVGKKSDRGRINTCS 96 (217)
Q Consensus 65 e~~~~~~~~~L~~r~l~~~~~~~~~~~~~~~~ 96 (217)
...+...++.|+++++++-.....+++...++
T Consensus 32 ~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~ 63 (68)
T PF13463_consen 32 KSTVSRIIKKLEEKGLVEKERDPHDKRSKRYR 63 (68)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCCCCcCCeeEEE
Confidence 34566889999999999877666666655554
No 100
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.23 E-value=64 Score=17.83 Aligned_cols=14 Identities=7% Similarity=0.230 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCCCC
Q 044539 49 QLYQLWIAEGFIPD 62 (217)
Q Consensus 49 ~Li~~WiaeG~i~~ 62 (217)
.-++.|+.+|++++
T Consensus 15 ~tlr~~~~~g~l~~ 28 (49)
T cd04761 15 STLRYYERIGLLSP 28 (49)
T ss_pred HHHHHHHHCCCCCC
Confidence 35789999999864
No 101
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=27.12 E-value=89 Score=18.44 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=17.5
Q ss_pred CCCeecHHHHHHHHHHcCCCCCChHHHHHH
Q 044539 41 VYFEISTKQLYQLWIAEGFIPDNNEAIAER 70 (217)
Q Consensus 41 ~~~~i~~~~Li~~WiaeG~i~~~~e~~~~~ 70 (217)
+|..|+.+.++.++ +.|.- .++++++
T Consensus 15 ~GTRI~v~~i~~~~-~~G~s---~eeI~~~ 40 (56)
T PF04255_consen 15 RGTRIPVRDILDLL-AAGES---PEEIAED 40 (56)
T ss_dssp TTSS-BHHHHHHHH-HTT-----HHHHHHH
T ss_pred cCceecHHHHHHHH-HcCCC---HHHHHHH
Confidence 67889999999988 88876 4555554
No 102
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=25.07 E-value=1.9e+02 Score=18.54 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 47 TKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 47 ~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
-.++|. |+.+.+-.....+.|-.+.+.|++.++|+.+..
T Consensus 32 G~e~Vd-WL~~~~~~~~~r~eAv~lgq~Ll~~g~I~hv~~ 70 (83)
T cd04449 32 GSEAVS-WLINNFEDVDTREEAVELGQELMNEGLIEHVSG 70 (83)
T ss_pred hHHHHH-HHHHhCCCCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 456777 554433211136778889999999999998764
No 103
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=24.54 E-value=37 Score=23.33 Aligned_cols=15 Identities=13% Similarity=-0.086 Sum_probs=13.1
Q ss_pred ccccchHhHHHHHHH
Q 044539 21 AYCMLHFYLKLCCLY 35 (217)
Q Consensus 21 sY~~Lp~~lk~Cfl~ 35 (217)
-||.||.+.|.||--
T Consensus 46 aFd~LPa~iRe~F~N 60 (114)
T PF09675_consen 46 AFDELPAHIRERFNN 60 (114)
T ss_pred HHHHchHHHHHHhCC
Confidence 689999999999853
No 104
>COG5626 Uncharacterized small conserved protein [Function unknown]
Probab=24.52 E-value=77 Score=20.81 Aligned_cols=16 Identities=38% Similarity=0.765 Sum_probs=12.4
Q ss_pred HHHHHHcCCCCCChHH
Q 044539 51 YQLWIAEGFIPDNNEA 66 (217)
Q Consensus 51 i~~WiaeG~i~~~~e~ 66 (217)
++.||.||+|...-|+
T Consensus 53 V~~Wise~lisKp~e~ 68 (97)
T COG5626 53 VAAWISEGLISKPGED 68 (97)
T ss_pred HHHHHhccCcCCCCHH
Confidence 6789999999775333
No 105
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.07 E-value=1.2e+02 Score=18.45 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=20.2
Q ss_pred eecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCC
Q 044539 44 EISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGF 80 (217)
Q Consensus 44 ~i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l 80 (217)
.|++++||.+ ||-+.++.++-.+-=.-|+++|+
T Consensus 3 tv~k~dLi~l----Gf~~~tA~~IIrqAK~~lV~~G~ 35 (59)
T PF11372_consen 3 TVTKKDLIEL----GFSESTARDIIRQAKALLVQKGF 35 (59)
T ss_pred ccCHHHHHHc----CCCHHHHHHHHHHHHHHHHHcCC
Confidence 4677887765 88754444444444455777654
No 106
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=24.01 E-value=2.1e+02 Score=18.56 Aligned_cols=37 Identities=19% Similarity=0.445 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCC--CCCChHHHHHHHHHHHHhCCCccceec
Q 044539 47 TKQLYQLWIAEGF--IPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 47 ~~~Li~~WiaeG~--i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
=.+||. |+.+.+ +.. .+.|..+-+.|++.|+|..+..
T Consensus 32 GsdlVd-WL~~~~~~~~~--R~eAv~~g~~Ll~~G~i~HV~~ 70 (84)
T cd04438 32 GSDLVD-WLLSHVEGLTD--RREARKYASSLLKLGYIRHTVN 70 (84)
T ss_pred chHHHH-HHHHhCCCCCC--HHHHHHHHHHHHHCCcEEecCC
Confidence 346777 555533 444 5678899999999999998754
No 107
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=23.24 E-value=39 Score=28.99 Aligned_cols=36 Identities=28% Similarity=0.121 Sum_probs=16.0
Q ss_pred CCceeEEEeCCCC-Cc--cCCccccccccCCEEeeCCCC
Q 044539 177 FNFLRVLDLGSLV-LI--RYPSEVENLFLLRYLNLNIPS 212 (217)
Q Consensus 177 l~~LrvLdL~~~~-i~--~lP~~I~~L~~LryL~L~~t~ 212 (217)
++.|+.|.+.+|. ++ .+-.-...+++||+|+|++|.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4455555555444 32 111112234456666665543
No 108
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=22.95 E-value=2.1e+02 Score=19.30 Aligned_cols=41 Identities=7% Similarity=0.180 Sum_probs=33.1
Q ss_pred ecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceecC
Q 044539 45 ISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKKS 87 (217)
Q Consensus 45 i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~~ 87 (217)
|.-..+|.|.+...++.. ++.|-..=..|++.|+++|+...
T Consensus 32 ftGsdVVdWLv~~~~v~~--r~EAl~las~Ll~eGyL~P~gd~ 72 (99)
T cd04445 32 FTGSCVIDWLVSNQSVRN--RQEGLMLASSLLNEGYLQPAGDT 72 (99)
T ss_pred ecccHHHHHHHHhhcccc--hHHHHHHHHHHHHcCCeeecCcc
Confidence 466789999999988865 56677777899999999998653
No 109
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=22.45 E-value=27 Score=19.74 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=8.1
Q ss_pred hhcCCCCeecH
Q 044539 37 SVFLVYFEIST 47 (217)
Q Consensus 37 s~Fp~~~~i~~ 47 (217)
++||.||.-.|
T Consensus 14 ~IyP~Gy~s~R 24 (44)
T smart00541 14 AIFPVGYKSTR 24 (44)
T ss_pred EEecCCEEEEE
Confidence 68898887554
No 110
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=22.04 E-value=2.5e+02 Score=19.85 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCC-CCCChHHHHHHHHHHHHhCCCccceec
Q 044539 48 KQLYQLWIAEGF-IPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 48 ~~Li~~WiaeG~-i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
.++|.|.+..|- +.+ .+.|-.+-+.|++.++|+.+..
T Consensus 34 sElVdWLl~~~~~v~s--R~eAv~lgq~Ll~~gvi~HV~~ 71 (125)
T cd04437 34 TELVDWLLQQSPCVQS--RSQAVGMWQVLLEEGVLLHVDQ 71 (125)
T ss_pred HHHHHHHHHcCCCCCC--HHHHHHHHHHHHhCCCeEEeCC
Confidence 467888888874 334 5678889999999999998764
No 111
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=21.29 E-value=1.5e+02 Score=17.77 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=21.7
Q ss_pred ecHHHHHHHHHHcCCCCCC--hHHHHHHHHHHHHhCCCcc
Q 044539 45 ISTKQLYQLWIAEGFIPDN--NEAIAERYLEQLINGGFVD 82 (217)
Q Consensus 45 i~~~~Li~~WiaeG~i~~~--~e~~~~~~~~~L~~r~l~~ 82 (217)
.+.+.+++...++ |=.+. ++.....++++|.++++++
T Consensus 30 ~t~~ei~~~l~~~-y~~~~~~~~~dv~~fl~~L~~~glIe 68 (68)
T PF05402_consen 30 RTVEEIVDALAEE-YDVDPEEAEEDVEEFLEQLREKGLIE 68 (68)
T ss_dssp S-HHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCcCcC
Confidence 5677777766555 31111 5666778899999998875
No 112
>PHA02126 hypothetical protein
Probab=21.21 E-value=33 Score=23.91 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=10.7
Q ss_pred HHHHHHHHccccch
Q 044539 13 ELRGLQVVAYCMLH 26 (217)
Q Consensus 13 ~i~~~l~lsY~~Lp 26 (217)
..-++=++|||.||
T Consensus 39 t~~~~hklsydqlp 52 (153)
T PHA02126 39 TTVKLHKLSYDQLP 52 (153)
T ss_pred HHHHHhhcccccCC
Confidence 44566789999996
No 113
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=20.21 E-value=87 Score=21.84 Aligned_cols=22 Identities=9% Similarity=0.315 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHhCCCcccee
Q 044539 64 NEAIAERYLEQLINGGFVDVGK 85 (217)
Q Consensus 64 ~e~~~~~~~~~L~~r~l~~~~~ 85 (217)
..+.|+.+|++||.+|=+...+
T Consensus 20 ~~ek~~k~~~~LVkkGe~~~ee 41 (118)
T TIGR01837 20 VQEEGSKFFNRLVKEGELAEKR 41 (118)
T ss_pred HHHHHHHHHHHHHHhccccHHH
Confidence 5677889999999988776543
Done!