Query 044539
Match_columns 217
No_of_seqs 194 out of 1299
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:56:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.8 3.8E-20 1.3E-24 161.8 2.2 95 12-114 361-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.5 4.2E-14 1.4E-18 133.3 9.7 92 11-112 361-452 (1249)
3 1vt4_I APAF-1 related killer D 99.4 1.3E-13 4.5E-18 126.1 7.0 85 11-106 352-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.2 2.3E-11 7.8E-16 106.9 9.5 88 12-109 362-449 (591)
5 3e6j_A Variable lymphocyte rec 98.4 7.2E-07 2.4E-11 68.9 8.0 85 128-217 64-151 (229)
6 2wfh_A SLIT homolog 2 protein 98.4 1.2E-06 4.1E-11 66.0 8.1 85 127-216 30-117 (193)
7 2r9u_A Variable lymphocyte rec 98.4 1.2E-06 4.1E-11 64.8 7.8 85 126-215 31-119 (174)
8 2ell_A Acidic leucine-rich nuc 98.4 1.2E-06 4.2E-11 64.0 7.7 82 129-215 50-134 (168)
9 2v9t_B SLIT homolog 2 protein 98.3 1.4E-06 4.9E-11 66.8 7.7 45 172-216 98-143 (220)
10 2je0_A Acidic leucine-rich nuc 98.3 6.5E-07 2.2E-11 64.2 5.5 86 127-217 41-129 (149)
11 4b8c_D Glucose-repressible alc 98.3 5.3E-07 1.8E-11 81.2 6.0 84 128-217 224-309 (727)
12 3e6j_A Variable lymphocyte rec 98.3 1.6E-06 5.5E-11 67.0 8.0 87 126-217 38-128 (229)
13 2r9u_A Variable lymphocyte rec 98.3 2E-06 7E-11 63.6 7.6 64 149-217 33-97 (174)
14 2o6r_A Variable lymphocyte rec 98.3 2.7E-06 9.2E-11 62.8 7.9 39 174-212 96-135 (177)
15 4g8a_A TOLL-like receptor 4; l 98.3 1.4E-06 4.7E-11 76.3 7.3 86 126-216 50-139 (635)
16 1a9n_A U2A', U2A'; complex (nu 98.3 1.3E-06 4.3E-11 64.6 6.0 84 129-217 43-129 (176)
17 3vq2_A TLR4, TOLL-like recepto 98.3 1.5E-06 5E-11 76.2 7.4 86 126-216 30-119 (606)
18 1w8a_A SLIT protein; signaling 98.3 1.9E-06 6.4E-11 64.7 6.8 81 129-214 30-115 (192)
19 3g39_A Variable lymphocyte rec 98.3 2.3E-06 8E-11 63.0 7.2 84 126-214 28-115 (170)
20 3g39_A Variable lymphocyte rec 98.3 2.9E-06 9.9E-11 62.5 7.6 65 148-217 29-94 (170)
21 2o6s_A Variable lymphocyte rec 98.3 3.1E-06 1.1E-10 64.1 7.9 84 128-216 52-139 (208)
22 2v70_A SLIT-2, SLIT homolog 2 98.2 3.2E-06 1.1E-10 64.9 7.9 83 129-216 58-144 (220)
23 2v9t_B SLIT homolog 2 protein 98.2 3.6E-06 1.2E-10 64.6 7.9 83 128-215 32-118 (220)
24 2v70_A SLIT-2, SLIT homolog 2 98.2 4.5E-06 1.5E-10 64.0 7.8 86 126-216 30-120 (220)
25 4ezg_A Putative uncharacterize 98.2 5.5E-06 1.9E-10 62.2 8.0 83 128-216 88-174 (197)
26 3rfs_A Internalin B, repeat mo 98.2 4.4E-06 1.5E-10 66.1 7.5 66 146-216 106-172 (272)
27 2z80_A TOLL-like receptor 2, v 98.2 3.3E-06 1.1E-10 69.2 7.0 85 127-216 51-139 (353)
28 3m19_A Variable lymphocyte rec 98.2 5.2E-06 1.8E-10 64.8 7.7 85 128-217 59-147 (251)
29 4ezg_A Putative uncharacterize 98.2 4.8E-06 1.6E-10 62.6 7.1 85 127-216 65-152 (197)
30 2o6s_A Variable lymphocyte rec 98.1 6.9E-06 2.4E-10 62.1 7.8 81 128-213 76-160 (208)
31 4fcg_A Uncharacterized protein 98.1 6.1E-06 2.1E-10 67.2 7.9 84 128-217 104-199 (328)
32 1dce_A Protein (RAB geranylger 98.1 3.8E-06 1.3E-10 73.5 7.1 82 128-216 463-548 (567)
33 3m19_A Variable lymphocyte rec 98.1 6.7E-06 2.3E-10 64.1 7.6 84 128-216 83-170 (251)
34 4fcg_A Uncharacterized protein 98.1 4.7E-06 1.6E-10 67.8 6.6 41 172-212 200-240 (328)
35 1xku_A Decorin; proteoglycan, 98.1 7.1E-06 2.4E-10 66.5 7.3 85 128-217 192-279 (330)
36 3zyi_A Leucine-rich repeat-con 98.1 7E-06 2.4E-10 69.6 7.3 86 126-216 73-162 (452)
37 2o6q_A Variable lymphocyte rec 98.1 1.3E-05 4.3E-10 63.3 8.2 65 147-216 83-148 (270)
38 2z63_A TOLL-like receptor 4, v 98.1 6.3E-06 2.1E-10 71.5 7.0 43 172-214 94-137 (570)
39 3v47_A TOLL-like receptor 5B a 98.1 6.7E-06 2.3E-10 69.4 7.0 85 126-214 28-116 (455)
40 1a9n_A U2A', U2A'; complex (nu 98.1 5.3E-06 1.8E-10 61.2 5.5 84 127-217 18-104 (176)
41 2z81_A CD282 antigen, TOLL-lik 98.1 7.7E-06 2.6E-10 70.7 7.3 84 127-215 25-112 (549)
42 2ell_A Acidic leucine-rich nuc 98.1 6.8E-06 2.3E-10 60.0 5.9 87 127-217 70-163 (168)
43 1ogq_A PGIP-2, polygalacturona 98.0 6.3E-06 2.2E-10 66.5 6.3 82 128-214 76-162 (313)
44 2xot_A Amphoterin-induced prot 98.0 1E-05 3.5E-10 66.6 7.6 85 128-217 88-179 (361)
45 1p9a_G Platelet glycoprotein I 98.0 1E-05 3.4E-10 64.7 7.3 67 146-217 97-164 (290)
46 2o6r_A Variable lymphocyte rec 98.0 1.3E-05 4.5E-10 59.0 7.4 87 126-217 26-116 (177)
47 1ziw_A TOLL-like receptor 3; i 98.0 7.2E-06 2.5E-10 72.8 7.0 84 127-215 24-111 (680)
48 2je0_A Acidic leucine-rich nuc 98.0 4.2E-06 1.4E-10 59.9 4.4 83 127-216 16-103 (149)
49 3o6n_A APL1; leucine-rich repe 98.0 1.1E-05 3.9E-10 66.8 7.6 42 173-214 112-154 (390)
50 1p9a_G Platelet glycoprotein I 98.0 1.3E-05 4.5E-10 64.0 7.7 85 128-217 100-188 (290)
51 3zyj_A Leucine-rich repeat-con 98.0 1.2E-05 4.2E-10 67.8 7.7 86 126-216 62-151 (440)
52 2ifg_A High affinity nerve gro 98.0 7.6E-06 2.6E-10 66.8 6.2 81 129-214 32-116 (347)
53 1w8a_A SLIT protein; signaling 98.0 9.8E-06 3.4E-10 60.7 6.3 83 127-214 53-139 (192)
54 2o6q_A Variable lymphocyte rec 98.0 1.7E-05 5.8E-10 62.5 7.9 66 146-216 130-196 (270)
55 1ozn_A Reticulon 4 receptor; N 98.0 1.8E-05 6.2E-10 62.7 8.0 66 146-216 102-168 (285)
56 1ozn_A Reticulon 4 receptor; N 98.0 1.5E-05 5.2E-10 63.1 7.5 85 128-216 56-144 (285)
57 2xwt_C Thyrotropin receptor; s 98.0 1.1E-05 3.7E-10 62.4 6.3 41 173-214 100-144 (239)
58 2xot_A Amphoterin-induced prot 98.0 1.1E-05 3.8E-10 66.4 6.8 84 129-217 65-152 (361)
59 4fmz_A Internalin; leucine ric 98.0 1.5E-05 5.1E-10 64.9 7.4 76 128-211 66-142 (347)
60 3o6n_A APL1; leucine-rich repe 98.0 8.8E-06 3E-10 67.5 6.2 86 127-217 44-133 (390)
61 3a79_B TLR6, VLRB.59, TOLL-lik 98.0 1.2E-05 4.2E-10 69.9 7.2 83 127-216 51-136 (562)
62 3oja_B Anopheles plasmodium-re 98.0 1.4E-05 4.8E-10 70.2 7.6 65 145-214 95-160 (597)
63 2wfh_A SLIT homolog 2 protein 98.0 1.8E-05 6.2E-10 59.4 7.2 83 127-214 53-139 (193)
64 4b8c_D Glucose-repressible alc 98.0 3.2E-06 1.1E-10 76.2 3.4 83 127-215 246-330 (727)
65 1ogq_A PGIP-2, polygalacturona 98.0 8.6E-06 3E-10 65.7 5.6 82 128-214 101-187 (313)
66 2ft3_A Biglycan; proteoglycan, 98.0 6.4E-06 2.2E-10 66.9 4.8 84 129-217 194-280 (332)
67 3j0a_A TOLL-like receptor 5; m 98.0 1.5E-05 5.2E-10 72.8 7.8 85 126-214 22-110 (844)
68 2id5_A Lingo-1, leucine rich r 98.0 1.4E-05 4.9E-10 67.9 7.0 83 127-214 31-117 (477)
69 3t6q_A CD180 antigen; protein- 98.0 1E-05 3.5E-10 70.8 6.2 85 126-215 31-119 (606)
70 2z7x_B TOLL-like receptor 1, v 98.0 9.3E-06 3.2E-10 69.8 5.8 80 128-214 21-103 (520)
71 2z62_A TOLL-like receptor 4, v 97.9 1.6E-05 5.4E-10 62.8 6.7 44 172-215 94-138 (276)
72 3a79_B TLR6, VLRB.59, TOLL-lik 97.9 1.3E-05 4.3E-10 69.8 6.6 81 131-217 34-116 (562)
73 1dce_A Protein (RAB geranylger 97.9 1.9E-05 6.5E-10 69.1 7.8 81 129-216 442-523 (567)
74 2z62_A TOLL-like receptor 4, v 97.9 1.8E-05 6.2E-10 62.4 7.0 84 128-216 76-164 (276)
75 2z7x_B TOLL-like receptor 1, v 97.9 9.8E-06 3.4E-10 69.7 5.8 64 149-217 21-85 (520)
76 1xku_A Decorin; proteoglycan, 97.9 1.8E-05 6.2E-10 64.0 7.0 83 127-216 51-136 (330)
77 3rfs_A Internalin B, repeat mo 97.9 2.3E-05 7.9E-10 61.8 7.4 84 128-216 109-196 (272)
78 1h6u_A Internalin H; cell adhe 97.9 2.1E-05 7.3E-10 63.3 7.2 82 127-216 62-144 (308)
79 3v47_A TOLL-like receptor 5B a 97.9 1.8E-05 6.2E-10 66.7 6.9 83 129-216 300-386 (455)
80 2ft3_A Biglycan; proteoglycan, 97.9 2.9E-05 9.8E-10 63.0 7.7 82 127-215 53-137 (332)
81 4g8a_A TOLL-like receptor 4; l 97.9 2.3E-05 7.8E-10 68.5 7.3 82 128-214 76-161 (635)
82 1h6t_A Internalin B; cell adhe 97.9 2.3E-05 7.9E-10 62.6 6.8 82 127-216 67-149 (291)
83 1o6v_A Internalin A; bacterial 97.9 2.7E-05 9.3E-10 66.2 7.4 79 128-214 68-147 (466)
84 3vq2_A TLR4, TOLL-like recepto 97.9 2.5E-05 8.7E-10 68.3 7.3 44 172-215 122-167 (606)
85 2z66_A Variable lymphocyte rec 97.9 1E-05 3.6E-10 64.7 4.3 85 127-214 27-114 (306)
86 1h6t_A Internalin B; cell adhe 97.8 4.2E-05 1.4E-09 61.1 7.4 42 173-215 151-192 (291)
87 2z63_A TOLL-like receptor 4, v 97.8 3.1E-05 1.1E-09 67.1 7.0 83 129-216 77-164 (570)
88 1h6u_A Internalin H; cell adhe 97.8 5.7E-05 1.9E-09 60.8 8.0 82 127-216 84-166 (308)
89 4fmz_A Internalin; leucine ric 97.8 3.3E-05 1.1E-09 62.8 6.4 42 172-214 305-346 (347)
90 2z66_A Variable lymphocyte rec 97.8 2.3E-05 7.8E-10 62.7 5.0 43 172-214 193-236 (306)
91 3oja_B Anopheles plasmodium-re 97.8 3.5E-05 1.2E-09 67.7 6.5 45 172-216 295-339 (597)
92 3o53_A Protein LRIM1, AGAP0063 97.7 4.5E-05 1.5E-09 61.5 6.3 41 174-214 210-250 (317)
93 2ifg_A High affinity nerve gro 97.7 6.8E-05 2.3E-09 61.1 7.3 71 142-217 24-96 (347)
94 1xeu_A Internalin C; cellular 97.7 0.00011 3.8E-09 57.7 8.0 79 128-215 85-164 (263)
95 3t6q_A CD180 antigen; protein- 97.7 5.8E-05 2E-09 66.0 6.6 83 128-215 57-143 (606)
96 1m9s_A Internalin B; cell inva 97.7 8E-05 2.7E-09 65.7 7.5 79 129-215 110-189 (605)
97 1xeu_A Internalin C; cellular 97.7 9.6E-05 3.3E-09 58.1 7.1 81 127-216 62-143 (263)
98 2xwt_C Thyrotropin receptor; s 97.7 6.9E-05 2.3E-09 57.8 6.1 43 174-216 123-171 (239)
99 2z80_A TOLL-like receptor 2, v 97.7 6.7E-05 2.3E-09 61.3 6.3 84 127-215 75-164 (353)
100 3zyj_A Leucine-rich repeat-con 97.6 9.3E-05 3.2E-09 62.4 7.0 67 145-216 203-270 (440)
101 4eco_A Uncharacterized protein 97.6 5.8E-05 2E-09 66.8 5.9 41 172-212 200-260 (636)
102 1o6v_A Internalin A; bacterial 97.6 6.4E-05 2.2E-09 63.9 6.0 81 128-216 46-127 (466)
103 2id5_A Lingo-1, leucine rich r 97.6 7.7E-05 2.6E-09 63.4 6.4 63 151-217 33-96 (477)
104 3zyi_A Leucine-rich repeat-con 97.6 0.00011 3.9E-09 62.1 7.3 67 145-216 214-281 (452)
105 3bz5_A Internalin-J, INLJ; leu 97.6 0.00012 4.2E-09 62.2 7.2 79 128-216 64-142 (457)
106 1ziw_A TOLL-like receptor 3; i 97.6 9.4E-05 3.2E-09 65.6 6.5 66 145-215 93-159 (680)
107 3o53_A Protein LRIM1, AGAP0063 97.6 0.00012 4E-09 59.1 6.4 42 176-217 189-230 (317)
108 1m9s_A Internalin B; cell inva 97.6 0.00015 5.2E-09 63.9 7.5 81 128-216 87-168 (605)
109 4eco_A Uncharacterized protein 97.6 7.8E-05 2.7E-09 66.0 5.6 87 127-217 248-347 (636)
110 2z81_A CD282 antigen, TOLL-lik 97.5 0.00011 3.7E-09 63.4 6.1 81 127-212 49-134 (549)
111 4ecn_A Leucine-rich repeat pro 97.5 8.7E-05 3E-09 68.1 5.5 87 127-217 490-589 (876)
112 3oja_A Leucine-rich immune mol 97.5 0.00014 4.7E-09 62.4 6.3 81 128-215 144-228 (487)
113 3rgz_A Protein brassinosteroid 97.5 0.00015 5.1E-09 65.6 6.6 82 128-214 632-717 (768)
114 3rgz_A Protein brassinosteroid 97.5 0.00023 8E-09 64.3 7.9 64 146-214 463-527 (768)
115 1wwl_A Monocyte differentiatio 97.5 7E-05 2.4E-09 60.2 4.0 81 127-213 94-185 (312)
116 3oja_A Leucine-rich immune mol 97.5 0.00016 5.6E-09 61.9 6.5 65 146-216 141-206 (487)
117 3j0a_A TOLL-like receptor 5; m 97.5 0.0002 6.9E-09 65.4 7.2 41 174-214 119-161 (844)
118 1ds9_A Outer arm dynein; leuci 97.5 2.1E-05 7.1E-10 59.1 0.5 66 144-216 43-108 (198)
119 3bz5_A Internalin-J, INLJ; leu 97.5 0.00027 9.3E-09 60.1 7.3 74 128-211 85-158 (457)
120 4glp_A Monocyte differentiatio 97.5 0.00032 1.1E-08 56.3 7.4 82 129-215 118-211 (310)
121 1wwl_A Monocyte differentiatio 97.4 0.0002 6.8E-09 57.6 6.1 84 127-215 120-215 (312)
122 4glp_A Monocyte differentiatio 97.4 4.2E-05 1.5E-09 61.4 1.2 44 174-217 220-267 (310)
123 4ecn_A Leucine-rich repeat pro 97.3 0.0004 1.4E-08 63.7 7.5 83 129-217 729-822 (876)
124 1ds9_A Outer arm dynein; leuci 97.3 2.8E-06 9.7E-11 63.9 -5.7 80 128-214 70-153 (198)
125 3g06_A SSPH2 (leucine-rich rep 97.3 0.00057 1.9E-08 60.4 8.0 77 126-216 59-136 (622)
126 1jl5_A Outer protein YOPM; leu 97.2 0.0007 2.4E-08 57.5 7.5 79 128-216 131-210 (454)
127 3rw6_A Nuclear RNA export fact 97.2 0.00034 1.2E-08 55.3 4.7 65 146-214 167-233 (267)
128 2ca6_A RAN GTPase-activating p 97.2 0.00025 8.7E-09 58.5 3.8 39 175-213 91-134 (386)
129 3cvr_A Invasion plasmid antige 97.1 0.00092 3.1E-08 58.5 7.1 74 129-216 121-195 (571)
130 2ast_B S-phase kinase-associat 97.1 0.00014 4.7E-09 58.8 1.7 83 127-214 92-182 (336)
131 1jl5_A Outer protein YOPM; leu 97.1 0.0011 3.7E-08 56.3 7.3 38 178-216 215-252 (454)
132 4ay9_X Follicle-stimulating ho 97.1 0.00093 3.2E-08 54.5 6.6 88 126-217 28-120 (350)
133 3g06_A SSPH2 (leucine-rich rep 97.1 0.002 6.7E-08 57.0 8.6 78 126-217 79-157 (622)
134 3cvr_A Invasion plasmid antige 97.0 0.0012 4.1E-08 57.8 6.7 34 181-214 210-243 (571)
135 2ca6_A RAN GTPase-activating p 96.9 0.00072 2.5E-08 55.8 4.2 43 172-214 238-287 (386)
136 2ast_B S-phase kinase-associat 96.9 0.00029 9.9E-09 56.8 1.6 83 127-212 117-206 (336)
137 4ay9_X Follicle-stimulating ho 96.5 0.0056 1.9E-07 49.8 7.1 24 172-195 196-219 (350)
138 3e4g_A ATP synthase subunit S, 96.4 0.0043 1.5E-07 45.7 5.1 83 128-214 61-153 (176)
139 1z7x_W Ribonuclease inhibitor; 96.3 0.0016 5.5E-08 54.7 2.3 35 179-213 86-125 (461)
140 3rw6_A Nuclear RNA export fact 96.2 0.0023 7.9E-08 50.5 2.9 43 174-216 166-211 (267)
141 3ogk_B Coronatine-insensitive 96.0 0.0025 8.6E-08 55.3 2.4 63 148-214 462-526 (592)
142 1z7x_W Ribonuclease inhibitor; 95.7 0.0024 8.2E-08 53.7 1.0 86 127-214 2-98 (461)
143 3e4g_A ATP synthase subunit S, 95.3 0.015 5.1E-07 42.9 3.9 62 148-214 60-128 (176)
144 3rfe_A Platelet glycoprotein I 95.0 0.023 7.8E-07 39.6 3.9 36 178-213 31-67 (130)
145 3un9_A NLR family member X1; l 95.0 0.0056 1.9E-07 50.6 0.7 43 172-214 205-252 (372)
146 3goz_A Leucine-rich repeat-con 94.9 0.017 5.8E-07 47.1 3.4 84 129-214 52-151 (362)
147 2ra8_A Uncharacterized protein 94.7 0.0071 2.4E-07 49.8 0.6 30 128-158 193-227 (362)
148 3un9_A NLR family member X1; l 94.4 0.0099 3.4E-07 49.0 0.9 85 128-214 126-224 (372)
149 2p1m_B Transport inhibitor res 94.3 0.018 6.2E-07 49.8 2.3 62 148-213 455-518 (594)
150 1io0_A Tropomodulin; LRR prote 94.2 0.013 4.4E-07 43.3 1.1 85 128-214 36-136 (185)
151 3goz_A Leucine-rich repeat-con 94.2 0.032 1.1E-06 45.4 3.6 73 143-216 15-95 (362)
152 2p1m_B Transport inhibitor res 94.0 0.021 7.1E-07 49.5 2.1 16 22-37 6-22 (594)
153 1io0_A Tropomodulin; LRR prote 93.8 0.021 7.2E-07 42.1 1.6 86 127-214 64-164 (185)
154 3ogk_B Coronatine-insensitive 93.5 0.12 4.1E-06 44.6 6.1 39 175-213 267-305 (592)
155 3sb4_A Hypothetical leucine ri 91.7 0.28 9.5E-06 39.2 5.6 82 128-216 226-312 (329)
156 2ra8_A Uncharacterized protein 89.8 0.36 1.2E-05 39.5 4.7 11 199-209 217-227 (362)
157 3rfe_A Platelet glycoprotein I 85.8 0.78 2.7E-05 31.6 3.7 35 181-217 11-47 (130)
158 3sb4_A Hypothetical leucine ri 84.9 0.96 3.3E-05 36.0 4.4 61 148-215 225-287 (329)
159 1pgv_A TMD-1, tropomodulin TMD 62.3 3.8 0.00013 30.4 2.0 63 147-211 68-136 (197)
160 2kzc_A Uncharacterized protein 61.7 12 0.00042 23.6 4.0 36 46-85 9-46 (85)
161 4fdw_A Leucine rich hypothetic 61.7 9.2 0.00031 31.4 4.5 38 172-209 174-211 (401)
162 4fdw_A Leucine rich hypothetic 56.3 20 0.00068 29.4 5.7 42 172-215 317-359 (401)
163 1w5s_A Origin recognition comp 55.4 14 0.00048 29.8 4.6 68 17-85 298-372 (412)
164 1hqc_A RUVB; extended AAA-ATPa 52.4 5.2 0.00018 31.4 1.4 70 14-83 234-324 (324)
165 1uhw_A Pleckstrin; three-helix 49.6 19 0.00064 23.9 3.6 39 46-86 39-77 (109)
166 2cso_A Pleckstrin; DEP domain, 48.1 23 0.00079 24.2 4.0 39 45-85 48-86 (127)
167 3lqv_P Splicing factor 3B subu 43.4 7.5 0.00026 20.6 0.7 9 37-45 30-38 (39)
168 1pgv_A TMD-1, tropomodulin TMD 39.1 18 0.00061 26.7 2.5 67 146-214 38-111 (197)
169 1v3f_A Pleckstrin 2; three-hel 34.1 48 0.0016 22.2 3.8 39 45-85 38-76 (120)
170 1fsh_A Dishevelled-1; three-he 32.1 89 0.003 20.3 4.8 39 46-86 52-91 (105)
171 4h09_A Hypothetical leucine ri 31.0 1.4E+02 0.0049 23.5 7.0 37 172-208 280-317 (379)
172 2ysr_A DEP domain-containing p 27.1 1.3E+02 0.0044 19.5 4.9 40 45-86 41-87 (105)
173 4gt6_A Cell surface protein; l 25.0 1.4E+02 0.0049 23.7 6.0 39 172-211 328-367 (394)
174 2ll0_A Uncharacterized protein 23.5 32 0.0011 22.6 1.3 36 45-84 27-64 (104)
175 1fnn_A CDC6P, cell division co 23.3 2.7E+02 0.0092 21.7 8.2 64 22-86 283-353 (389)
176 2fho_A Spliceosomal protein SF 20.6 32 0.0011 19.0 0.7 9 37-45 29-37 (47)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.77 E-value=3.8e-20 Score=161.84 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=80.3
Q ss_pred HHHHHHHHHccccchHhHHHHHH-----------HhhhcCCCCeecHHHHHHHHHHc--CCCCCC-----hHHHHHHHHH
Q 044539 12 DELRGLQVVAYCMLHFYLKLCCL-----------YLSVFLVYFEISTKQLYQLWIAE--GFIPDN-----NEAIAERYLE 73 (217)
Q Consensus 12 ~~i~~~l~lsY~~Lp~~lk~Cfl-----------~~s~Fp~~~~i~~~~Li~~Wiae--G~i~~~-----~e~~~~~~~~ 73 (217)
+++.+++++||++||.++|.||+ |||+||+|+.|+ +++|+|+ ||+... .+++|+ ||+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~ 435 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLK 435 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHH
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHH
Confidence 34667889999999999999999 999999999999 8999999 999753 788888 999
Q ss_pred HHHhCCCccceecCCCCCeeEEEeChhHHHHHHHhhcccce
Q 044539 74 QLINGGFVDVGKKSDRGRINTCSIPGRCSLALLTGAFEGEF 114 (217)
Q Consensus 74 ~L~~r~l~~~~~~~~~~~~~~~~mhdlv~dla~~i~~~e~~ 114 (217)
+|+++||+++...+ ....|+|||+||++|+.++.++++
T Consensus 436 ~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 436 RLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999987643 346799999999999999987654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.50 E-value=4.2e-14 Score=133.27 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=82.6
Q ss_pred HHHHHHHHHHccccchHhHHHHHHHhhhcCCCCeecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceecCCCC
Q 044539 11 LDELRGLQVVAYCMLHFYLKLCCLYLSVFLVYFEISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKKSDRG 90 (217)
Q Consensus 11 ~~~i~~~l~lsY~~Lp~~lk~Cfl~~s~Fp~~~~i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~~~~~ 90 (217)
.+.+..++.+||+.||.++|.||+|||+||+++.|+++.++++|.++ ++.++.++++|+++||++... .+
T Consensus 361 ~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~ 430 (1249)
T 3sfz_A 361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NG 430 (1249)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SS
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CC
Confidence 46799999999999999999999999999999999999999999776 577999999999999999764 34
Q ss_pred CeeEEEeChhHHHHHHHhhccc
Q 044539 91 RINTCSIPGRCSLALLTGAFEG 112 (217)
Q Consensus 91 ~~~~~~mhdlv~dla~~i~~~e 112 (217)
....|+||++||++|+..+.++
T Consensus 431 ~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 431 KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSEEEECCHHHHHHHHHHTGGG
T ss_pred CceEEEecHHHHHHHHhhhhHH
Confidence 4567999999999999987665
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.43 E-value=1.3e-13 Score=126.08 Aligned_cols=85 Identities=20% Similarity=0.104 Sum_probs=75.2
Q ss_pred HHHHHHHHHHccccchHhH-HHHHHHhhhcCCCCeecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceecCCC
Q 044539 11 LDELRGLQVVAYCMLHFYL-KLCCLYLSVFLVYFEISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKKSDR 89 (217)
Q Consensus 11 ~~~i~~~l~lsY~~Lp~~l-k~Cfl~~s~Fp~~~~i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~~~~ 89 (217)
.+.+..+|.+||+.||.+. |.||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||++..
T Consensus 352 ~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d----- 420 (1221)
T 1vt4_I 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQ----- 420 (1221)
T ss_dssp CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBC-----
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEe-----
Confidence 3679999999999999998 99999999999999999999999999998 24588999999999999983
Q ss_pred CCeeEEEeChhHHHHHH
Q 044539 90 GRINTCSIPGRCSLALL 106 (217)
Q Consensus 90 ~~~~~~~mhdlv~dla~ 106 (217)
+....|+|||++++++.
T Consensus 421 ~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 421 PKESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSSEEBCCCHHHHHHH
T ss_pred CCCCEEEehHHHHHHhc
Confidence 12357999999999763
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.24 E-value=2.3e-11 Score=106.94 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=77.6
Q ss_pred HHHHHHHHHccccchHhHHHHHHHhhhcCCCCeecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceecCCCCC
Q 044539 12 DELRGLQVVAYCMLHFYLKLCCLYLSVFLVYFEISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKKSDRGR 91 (217)
Q Consensus 12 ~~i~~~l~lsY~~Lp~~lk~Cfl~~s~Fp~~~~i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~~~~~~ 91 (217)
..+..++..||+.||.+.|.||++||+||+|+.|+.+.++.+|.++ .+.++.++++|+++||++.... +.
T Consensus 362 ~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~ 431 (591)
T 1z6t_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GK 431 (591)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---TT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---CC
Confidence 5789999999999999999999999999999999999999999765 4568899999999999996542 34
Q ss_pred eeEEEeChhHHHHHHHhh
Q 044539 92 INTCSIPGRCSLALLTGA 109 (217)
Q Consensus 92 ~~~~~mhdlv~dla~~i~ 109 (217)
...|+||+++++++....
T Consensus 432 ~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 432 SFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEEEECCHHHHHHHHHHT
T ss_pred ccEEEEcHHHHHHHHhhh
Confidence 568999999999998873
No 5
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.42 E-value=7.2e-07 Score=68.94 Aligned_cols=85 Identities=22% Similarity=0.132 Sum_probs=55.6
Q ss_pred CceeEEEEeCCCCc-cc--cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCC
Q 044539 128 ENVKRFTAHGNLND-FE--FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLR 204 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~--~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lr 204 (217)
.+.+.|.+..+... ++ ....++ +|+.|.+.++.- ....+ ..+..++.|++|+|+++.+..+|..++.+.+|+
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l---~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLT-QLTVLDLGTNQL---TVLPS-AVFDRLVHLKELFMCCNKLTELPRGIERLTHLT 138 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC---CCCCT-TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCS
T ss_pred cCCcEEECCCCCCCCcChhhcccCC-CcCEEECCCCcC---CccCh-hHhCcchhhCeEeccCCcccccCcccccCCCCC
Confidence 34556666555443 11 134556 667776665542 22333 557778888888888888888888888888888
Q ss_pred EEeeCCCCcccCC
Q 044539 205 YLNLNIPSLKSLL 217 (217)
Q Consensus 205 yL~L~~t~i~~L~ 217 (217)
+|+|+++.++.++
T Consensus 139 ~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 139 HLALDQNQLKSIP 151 (229)
T ss_dssp EEECCSSCCCCCC
T ss_pred EEECCCCcCCccC
Confidence 8888888776653
No 6
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.38 E-value=1.2e-06 Score=65.96 Aligned_cols=85 Identities=18% Similarity=0.101 Sum_probs=52.0
Q ss_pred CCceeEEEEeCCCCc-c-ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-cccccccC
Q 044539 127 RENVKRFTAHGNLND-F-EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLFLL 203 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~-~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~L 203 (217)
+...+.+.+..+... + ..+..++ +|+.|.+.++.-. ...+ ..|..+++|+.|+|+++.+..+|. .++.|.+|
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~~~l~-~L~~L~Ls~N~i~---~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKELSNYK-HLTLIDLSNNRIS---TLSN-QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGCT-TCCEEECCSSCCC---CCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCcCchhHHHhhccc-CCCEEECCCCcCC---EeCH-hHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 445667776665544 2 2345566 7777777665432 2333 556677777777777777665553 46677777
Q ss_pred CEEeeCCCCcccC
Q 044539 204 RYLNLNIPSLKSL 216 (217)
Q Consensus 204 ryL~L~~t~i~~L 216 (217)
++|+|+++.|+.+
T Consensus 105 ~~L~L~~N~l~~~ 117 (193)
T 2wfh_A 105 RLLSLHGNDISVV 117 (193)
T ss_dssp CEEECCSSCCCBC
T ss_pred CEEECCCCCCCee
Confidence 7777777666654
No 7
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.37 E-value=1.2e-06 Score=64.84 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=66.9
Q ss_pred CCCceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccc
Q 044539 126 LRENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLF 201 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~ 201 (217)
.+...+.|.+..+... . ..+..++ +|+.|.+.++.-. .+.+ ..|.++++|++|+|+++.+..+|.. ++.|.
T Consensus 31 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~---~i~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 31 IPTDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLT---AIPT-GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLK 105 (174)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCC---CCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCC---ccCh-hHhCCcchhhEEECCCCccceeCHHHhcccc
Confidence 3467788888887765 2 2356788 9999999877532 3443 5678999999999999999999876 88999
Q ss_pred cCCEEeeCCCCccc
Q 044539 202 LLRYLNLNIPSLKS 215 (217)
Q Consensus 202 ~LryL~L~~t~i~~ 215 (217)
+|++|+|+++.+..
T Consensus 106 ~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 106 SLTHIYLYNNPWDC 119 (174)
T ss_dssp TCSEEECCSSCBCT
T ss_pred CCCEEEeCCCCccc
Confidence 99999999988753
No 8
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.36 E-value=1.2e-06 Score=64.03 Aligned_cols=82 Identities=15% Similarity=0.009 Sum_probs=40.1
Q ss_pred ceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCC--ccccccccCCE
Q 044539 129 NVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYP--SEVENLFLLRY 205 (217)
Q Consensus 129 ~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP--~~I~~L~~Lry 205 (217)
..+.+.+..+... ......++ +|+.|.+.++... ..++ ..+..+++|++|+|++|.+..+| ..++.+++|++
T Consensus 50 ~L~~L~l~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~---~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 50 NLEFLSLINVGLISVSNLPKLP-KLKKLELSENRIF---GGLD-MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GCCEEEEESSCCCCCSSCCCCS-SCCEEEEESCCCC---SCCC-HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred CCCEEeCcCCCCCChhhhccCC-CCCEEECcCCcCc---hHHH-HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 3455555544332 22334455 5555555544421 1133 44444555555555555555544 45555555555
Q ss_pred EeeCCCCccc
Q 044539 206 LNLNIPSLKS 215 (217)
Q Consensus 206 L~L~~t~i~~ 215 (217)
|+++++.+..
T Consensus 125 L~l~~N~l~~ 134 (168)
T 2ell_A 125 LDLFNCEVTN 134 (168)
T ss_dssp EECCSSGGGT
T ss_pred EEeeCCcCcc
Confidence 5555555443
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.33 E-value=1.4e-06 Score=66.84 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=26.4
Q ss_pred hhhcCCCceeEEEeCCCCCccC-CccccccccCCEEeeCCCCcccC
Q 044539 172 KICKMFNFLRVLDLGSLVLIRY-PSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~LryL~L~~t~i~~L 216 (217)
..|..+++|++|+|+++.+..+ |..++.+.+|++|+|+++.++.+
T Consensus 98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence 4455566666666666665544 34556666666666666665544
No 10
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.33 E-value=6.5e-07 Score=64.20 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=65.7
Q ss_pred CCceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCC--ccccccccC
Q 044539 127 RENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYP--SEVENLFLL 203 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP--~~I~~L~~L 203 (217)
....+.+.+..+... ......++ +|++|.+.++... ..++ ..+..+++|++|+|++|.+..+| ..++.+++|
T Consensus 41 l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~Ls~n~i~---~~~~-~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 41 FEELEFLSTINVGLTSIANLPKLN-KLKKLELSDNRVS---GGLE-VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCCEEECTTSCCCCCTTCCCCT-TCCEEECCSSCCC---SCTH-HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred cCCCcEEECcCCCCCCchhhhcCC-CCCEEECCCCccc---chHH-HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 356777777766544 34456678 8999988776542 2355 77778999999999999988765 889999999
Q ss_pred CEEeeCCCCcccCC
Q 044539 204 RYLNLNIPSLKSLL 217 (217)
Q Consensus 204 ryL~L~~t~i~~L~ 217 (217)
++|++++|.++.++
T Consensus 116 ~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 116 KSLDLFNCEVTNLN 129 (149)
T ss_dssp CEEECTTCGGGGST
T ss_pred CEEeCcCCcccchH
Confidence 99999999887653
No 11
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.33 E-value=5.3e-07 Score=81.24 Aligned_cols=84 Identities=21% Similarity=0.176 Sum_probs=51.1
Q ss_pred CceeEEEEeCCCCc-c-ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCE
Q 044539 128 ENVKRFTAHGNLND-F-EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRY 205 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~-~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lry 205 (217)
...+.|.+..+... + .....++ +|++|.+.++... .+| ..+.++++|++|+|++|.+..+|++|+.|.+|++
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~-~L~~L~Ls~N~l~----~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYD-FLTRLYLNGNSLT----ELP-AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCC-SCSCCBCTTSCCS----CCC-GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred CCCcEEECCCCCCCCCChhhcCCC-CCCEEEeeCCcCc----ccC-hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 44556666555433 1 2234566 6777766655431 344 5566677777777777776677777777777777
Q ss_pred EeeCCCCcccCC
Q 044539 206 LNLNIPSLKSLL 217 (217)
Q Consensus 206 L~L~~t~i~~L~ 217 (217)
|+|++|.++.+|
T Consensus 298 L~L~~N~l~~lp 309 (727)
T 4b8c_D 298 FYFFDNMVTTLP 309 (727)
T ss_dssp EECCSSCCCCCC
T ss_pred EECCCCCCCccC
Confidence 777776666554
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.33 E-value=1.6e-06 Score=66.95 Aligned_cols=87 Identities=23% Similarity=0.188 Sum_probs=69.8
Q ss_pred CCCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccc
Q 044539 126 LRENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLF 201 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~ 201 (217)
.+...+.+.+..+... ......++ +|+.|.+.++.- ..+.+ ..|..+++|++|+|+++.+..+|.. ++.+.
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l---~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQL---GALPV-GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC---CCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCC---CCcCh-hhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence 4577889999887765 22356788 999999987764 23344 6689999999999999999988866 58999
Q ss_pred cCCEEeeCCCCcccCC
Q 044539 202 LLRYLNLNIPSLKSLL 217 (217)
Q Consensus 202 ~LryL~L~~t~i~~L~ 217 (217)
+|++|+|++++++.+|
T Consensus 113 ~L~~L~Ls~N~l~~lp 128 (229)
T 3e6j_A 113 HLKELFMCCNKLTELP 128 (229)
T ss_dssp TCCEEECCSSCCCSCC
T ss_pred hhCeEeccCCcccccC
Confidence 9999999999998775
No 13
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.30 E-value=2e-06 Score=63.60 Aligned_cols=64 Identities=23% Similarity=0.101 Sum_probs=54.9
Q ss_pred CCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccc-cccccCCEEeeCCCCcccCC
Q 044539 149 DSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEV-ENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 149 ~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I-~~L~~LryL~L~~t~i~~L~ 217 (217)
+ .++.|.+.++.- ....+ ..|.++++|++|+|+++.+..+|..+ +.|.+|++|+|++++|+.+|
T Consensus 33 ~-~L~~L~Ls~N~l---~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~ 97 (174)
T 2r9u_A 33 T-DKQRLWLNNNQI---TKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97 (174)
T ss_dssp T-TCSEEECCSSCC---CCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred C-CCcEEEeCCCCc---cccCH-HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC
Confidence 6 899999887764 23445 78999999999999999999999875 89999999999999998765
No 14
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.28 E-value=2.7e-06 Score=62.79 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=18.3
Q ss_pred hcCCCceeEEEeCCCCCccCCccc-cccccCCEEeeCCCC
Q 044539 174 CKMFNFLRVLDLGSLVLIRYPSEV-ENLFLLRYLNLNIPS 212 (217)
Q Consensus 174 ~~~l~~LrvLdL~~~~i~~lP~~I-~~L~~LryL~L~~t~ 212 (217)
+..++.|++|+|+++.+..+|..+ +.+.+|++|+|+++.
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 444444555555444444444432 344455555554444
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.28 E-value=1.4e-06 Score=76.30 Aligned_cols=86 Identities=17% Similarity=-0.024 Sum_probs=53.6
Q ss_pred CCCceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-cccccc
Q 044539 126 LRENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLF 201 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~ 201 (217)
.|..+++|.+..+... + ..+..++ +||+|.+.++.- ..+.+ ..|.++++|++|+|++|+++.+|. .++.|.
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~i---~~i~~-~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEI---QTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCC---CEECT-TTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCcC---CCcCh-hHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 4567788888776654 2 2356677 788887766542 12233 456666777777777766666664 356666
Q ss_pred cCCEEeeCCCCcccC
Q 044539 202 LLRYLNLNIPSLKSL 216 (217)
Q Consensus 202 ~LryL~L~~t~i~~L 216 (217)
+|++|+|++++++.+
T Consensus 125 ~L~~L~Ls~N~l~~l 139 (635)
T 4g8a_A 125 SLQKLVAVETNLASL 139 (635)
T ss_dssp TCCEEECTTSCCCCS
T ss_pred CCCEEECCCCcCCCC
Confidence 666666666666554
No 16
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.27 E-value=1.3e-06 Score=64.62 Aligned_cols=84 Identities=14% Similarity=0.005 Sum_probs=57.8
Q ss_pred ceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc--cccccccCCE
Q 044539 129 NVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS--EVENLFLLRY 205 (217)
Q Consensus 129 ~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~--~I~~L~~Lry 205 (217)
..+.+.+..+... ......++ +|++|.+.++.-. ...+ ..+..+++|++|+|++|.+..+|. .++.+++|++
T Consensus 43 ~L~~L~Ls~N~l~~~~~l~~l~-~L~~L~Ls~N~l~---~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKLDGFPLLR-RLKTLLVNNNRIC---RIGE-GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117 (176)
T ss_dssp CCSEEECCSSCCCEECCCCCCS-SCCEEECCSSCCC---EECS-CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred CCCEEECCCCCCCcccccccCC-CCCEEECCCCccc---ccCc-chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCE
Confidence 5666766666544 34455677 8888877766532 2222 445778888888888888877776 7788888888
Q ss_pred EeeCCCCcccCC
Q 044539 206 LNLNIPSLKSLL 217 (217)
Q Consensus 206 L~L~~t~i~~L~ 217 (217)
|+++++.+..+|
T Consensus 118 L~l~~N~i~~~~ 129 (176)
T 1a9n_A 118 LCILRNPVTNKK 129 (176)
T ss_dssp EECCSSGGGGST
T ss_pred EEecCCCCCCcH
Confidence 888888776543
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.27 E-value=1.5e-06 Score=76.23 Aligned_cols=86 Identities=19% Similarity=0.066 Sum_probs=50.1
Q ss_pred CCCceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-Cccccccc
Q 044539 126 LRENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLF 201 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~ 201 (217)
.+...|++.+..+... . ..+.+++ +||+|.+.++.- ....+ ..|.++++||+|+|+++.+..+ |+.+++|.
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l---~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEI---ETIED-KAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCC---CEECT-TTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCc-cCcEEeCCCCcc---cccCH-HHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 3456677777666544 1 2345666 777776665532 22333 4566666666666666666554 55666666
Q ss_pred cCCEEeeCCCCcccC
Q 044539 202 LLRYLNLNIPSLKSL 216 (217)
Q Consensus 202 ~LryL~L~~t~i~~L 216 (217)
+|++|+|++|.++.+
T Consensus 105 ~L~~L~L~~n~l~~~ 119 (606)
T 3vq2_A 105 SLENLVAVETKLASL 119 (606)
T ss_dssp TCCEEECTTSCCCCS
T ss_pred cCCEEEccCCccccc
Confidence 666666666665543
No 18
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.26 E-value=1.9e-06 Score=64.72 Aligned_cols=81 Identities=14% Similarity=0.054 Sum_probs=41.3
Q ss_pred ceeEEEEeCCCCc-cc---cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-cccccccC
Q 044539 129 NVKRFTAHGNLND-FE---FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLFLL 203 (217)
Q Consensus 129 ~~r~ls~~~~~~~-~~---~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~L 203 (217)
..+.+.+..+... .+ ....++ +|++|.+.++.- ....+ ..|..+++|++|+|+++.+..+|. .++.|.+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l---~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQL---TGIEP-NAFEGASHIQELQLGENKIKEISNKMFLGLHQL 104 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCC---CCBCT-TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC
T ss_pred CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCC---CCcCH-hHcCCcccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 5555555555433 11 134555 666666655432 12223 455555556666666555554433 25555555
Q ss_pred CEEeeCCCCcc
Q 044539 204 RYLNLNIPSLK 214 (217)
Q Consensus 204 ryL~L~~t~i~ 214 (217)
++|+|++++++
T Consensus 105 ~~L~L~~N~l~ 115 (192)
T 1w8a_A 105 KTLNLYDNQIS 115 (192)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCcCC
Confidence 55555555554
No 19
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.26 E-value=2.3e-06 Score=62.96 Aligned_cols=84 Identities=15% Similarity=0.038 Sum_probs=65.9
Q ss_pred CCCceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccc
Q 044539 126 LRENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLF 201 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~ 201 (217)
.+...+.+.+..+... . ..+..++ +|+.|.+.++.- ....+ ..|.++++|++|+|+++.+..+|.. ++.|.
T Consensus 28 ~~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l---~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 102 (170)
T 3g39_A 28 IPTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQL---TVLPA-GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLK 102 (170)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCC---CCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCc---CccCh-hhccCCCCCCEEECCCCccCEeCHHHhcCCC
Confidence 3467788888887765 2 2356788 999999887753 23444 6688999999999999999988875 88999
Q ss_pred cCCEEeeCCCCcc
Q 044539 202 LLRYLNLNIPSLK 214 (217)
Q Consensus 202 ~LryL~L~~t~i~ 214 (217)
+|++|+|+++.+.
T Consensus 103 ~L~~L~L~~N~~~ 115 (170)
T 3g39_A 103 SLTHIWLLNNPWD 115 (170)
T ss_dssp TCCEEECCSSCBC
T ss_pred CCCEEEeCCCCCC
Confidence 9999999998764
No 20
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.26 E-value=2.9e-06 Score=62.47 Aligned_cols=65 Identities=25% Similarity=0.142 Sum_probs=54.6
Q ss_pred CCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccc-cccccCCEEeeCCCCcccCC
Q 044539 148 FDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEV-ENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 148 ~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I-~~L~~LryL~L~~t~i~~L~ 217 (217)
.+ .++.|.+.++.- ....+ ..|.++++|++|+|+++.+..+|..+ +.|.+|++|+|++++++.++
T Consensus 29 ~~-~l~~L~L~~N~i---~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 94 (170)
T 3g39_A 29 PT-TTQVLYLYDNQI---TKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94 (170)
T ss_dssp CT-TCSEEECCSSCC---CCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CC-CCcEEEcCCCcC---CccCh-hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC
Confidence 36 899999887654 23445 77899999999999999999998765 89999999999999998764
No 21
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.25 E-value=3.1e-06 Score=64.08 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=45.7
Q ss_pred CceeEEEEeCCCCc-cc--cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccccC
Q 044539 128 ENVKRFTAHGNLND-FE--FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~--~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~L 203 (217)
.+.+.+.+..+... .+ ....++ +|++|.+.++.- ....+ ..+..+++|++|+|+++.+..+|.. ++.+.+|
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l---~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQL---QSLPN-GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC---CCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcC---CccCH-hHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence 34455555544332 11 123455 666665554432 12222 4456666777777777666666554 4667777
Q ss_pred CEEeeCCCCcccC
Q 044539 204 RYLNLNIPSLKSL 216 (217)
Q Consensus 204 ryL~L~~t~i~~L 216 (217)
++|+++++.++.+
T Consensus 127 ~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 127 KDLRLYQNQLKSV 139 (208)
T ss_dssp CEEECCSSCCSCC
T ss_pred CEEECCCCcccee
Confidence 7777776666544
No 22
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.24 E-value=3.2e-06 Score=64.88 Aligned_cols=83 Identities=14% Similarity=0.095 Sum_probs=41.0
Q ss_pred ceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-CccccccccCC
Q 044539 129 NVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLFLLR 204 (217)
Q Consensus 129 ~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~Lr 204 (217)
..+.+.+..+... + ..+..++ +|+.|.+.++.- ....+ ..|..+++|++|+|+++.+..+ |..++.+.+|+
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l---~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRL---ENVQH-KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC---CCCCG-GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred CCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCcc---CccCH-hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 3445555444433 1 1234445 555555544432 12222 4455566666666666655544 44555566666
Q ss_pred EEeeCCCCcccC
Q 044539 205 YLNLNIPSLKSL 216 (217)
Q Consensus 205 yL~L~~t~i~~L 216 (217)
+|+|+++.++.+
T Consensus 133 ~L~L~~N~l~~~ 144 (220)
T 2v70_A 133 LLSLYDNQITTV 144 (220)
T ss_dssp EEECTTSCCCCB
T ss_pred EEECCCCcCCEE
Confidence 666665555443
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.23 E-value=3.6e-06 Score=64.58 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=39.0
Q ss_pred CceeEEEEeCCCCc-cc--cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccc-cccccC
Q 044539 128 ENVKRFTAHGNLND-FE--FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEV-ENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~--~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I-~~L~~L 203 (217)
...+.+.+..+... .+ .+..++ +|+.|.+.++.- ....+ ..|..+++|++|+|+++.+..+|..+ +.|.+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i---~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQI---SELAP-DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCC---CEECT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcC---CCcCH-HHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence 34455555444433 11 233444 555555544432 11223 44555555555555555555555442 445555
Q ss_pred CEEeeCCCCccc
Q 044539 204 RYLNLNIPSLKS 215 (217)
Q Consensus 204 ryL~L~~t~i~~ 215 (217)
++|+|+++.|+.
T Consensus 107 ~~L~L~~N~l~~ 118 (220)
T 2v9t_B 107 QLLLLNANKINC 118 (220)
T ss_dssp CEEECCSSCCCC
T ss_pred CEEECCCCCCCE
Confidence 555555555543
No 24
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.20 E-value=4.5e-06 Score=64.04 Aligned_cols=86 Identities=10% Similarity=-0.013 Sum_probs=68.0
Q ss_pred CCCceeEEEEeCCCCc-c-c--cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-cccc
Q 044539 126 LRENVKRFTAHGNLND-F-E--FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENL 200 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~-~-~--~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L 200 (217)
.+...+.+.+..+... . + .+..++ +|+.|.+.++.- ..+.+ ..|.++++|++|+|+++.+..+|.. ++.|
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i---~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKI---TDIEE-GAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCC---CEECT-TTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcC---CEECH-HHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 3456678888887765 2 1 256788 999999987653 23344 6799999999999999999887764 8899
Q ss_pred ccCCEEeeCCCCcccC
Q 044539 201 FLLRYLNLNIPSLKSL 216 (217)
Q Consensus 201 ~~LryL~L~~t~i~~L 216 (217)
.+|++|+|+++.++.+
T Consensus 105 ~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 105 ESLKTLMLRSNRITCV 120 (220)
T ss_dssp SSCCEEECTTSCCCCB
T ss_pred cCCCEEECCCCcCCeE
Confidence 9999999999998765
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.18 E-value=5.5e-06 Score=62.24 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=50.7
Q ss_pred CceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCC-CccCCccccccccC
Q 044539 128 ENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLV-LIRYPSEVENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~-i~~lP~~I~~L~~L 203 (217)
.+.+++.+..+... ......++ +|+.|.+.++.. ....+ ..+.++++|++|+|++|. +..+| .++.+++|
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~i---~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L 161 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLT-SLTLLDISHSAH---DDSIL-TKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL 161 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCT-TCCEEECCSSBC---BGGGH-HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC
T ss_pred CCCCEEEeECCccCcccChhhcCCC-CCCEEEecCCcc---CcHhH-HHHhhCCCCCEEEccCCCCccccH-hhcCCCCC
Confidence 44566666655443 23344556 666666655432 11223 566777777777777776 66666 57777777
Q ss_pred CEEeeCCCCcccC
Q 044539 204 RYLNLNIPSLKSL 216 (217)
Q Consensus 204 ryL~L~~t~i~~L 216 (217)
++|++++|.|+.+
T Consensus 162 ~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 162 KSLNIQFDGVHDY 174 (197)
T ss_dssp CEEECTTBCCCCC
T ss_pred CEEECCCCCCcCh
Confidence 7777777776654
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.17 E-value=4.4e-06 Score=66.06 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=37.5
Q ss_pred cCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccccCCEEeeCCCCcccC
Q 044539 146 DHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 146 ~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~LryL~L~~t~i~~L 216 (217)
..++ +|++|.+.++.- ....+ ..+..++.|++|+|++|.+..+|.. ++.+.+|++|++++|+++.+
T Consensus 106 ~~l~-~L~~L~L~~n~l---~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 106 DKLT-NLKELVLVENQL---QSLPD-GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTCT-TCCEEECTTSCC---CCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCc-CCCEEECCCCcC---CccCH-HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 3455 555555554432 12222 4456666666666666666655544 35666777777766666544
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.17 E-value=3.3e-06 Score=69.15 Aligned_cols=85 Identities=25% Similarity=0.169 Sum_probs=52.5
Q ss_pred CCceeEEEEeCCCCc-cc--cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-cccccc
Q 044539 127 RENVKRFTAHGNLND-FE--FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFL 202 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~--~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~ 202 (217)
+...+++.+..+... .+ ....++ +|++|.+.++.- ....+ ..+.++++|++|+|+++.+..+|.. ++++.+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l---~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGI---NTIEE-DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCC---CEECT-TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred cccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCcc---CccCH-hhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 346677777665544 21 355667 777777765532 22333 4566677777777777776666655 667777
Q ss_pred CCEEeeCCCCcccC
Q 044539 203 LRYLNLNIPSLKSL 216 (217)
Q Consensus 203 LryL~L~~t~i~~L 216 (217)
|++|+++++.++.+
T Consensus 126 L~~L~L~~n~l~~l 139 (353)
T 2z80_A 126 LTFLNLLGNPYKTL 139 (353)
T ss_dssp CSEEECTTCCCSSS
T ss_pred CCEEECCCCCCccc
Confidence 77777777666554
No 28
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.16 E-value=5.2e-06 Score=64.80 Aligned_cols=85 Identities=21% Similarity=0.156 Sum_probs=48.6
Q ss_pred CceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccccC
Q 044539 128 ENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~L 203 (217)
.+.+.+.+..+... . .....++ +|++|.+.++.- ....+ ..+..+++|++|+|+++.+..+|.. ++.+.+|
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l---~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQL---ASLPL-GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCC---CCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCcc---cccCh-hHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 34455555544332 1 1134455 666665554432 12333 5566777777777777777766655 4677777
Q ss_pred CEEeeCCCCcccCC
Q 044539 204 RYLNLNIPSLKSLL 217 (217)
Q Consensus 204 ryL~L~~t~i~~L~ 217 (217)
++|+|++++++.++
T Consensus 134 ~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 134 KELRLNTNQLQSIP 147 (251)
T ss_dssp CEEECCSSCCCCCC
T ss_pred cEEECcCCcCCccC
Confidence 77777777766543
No 29
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.15 E-value=4.8e-06 Score=62.59 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=62.0
Q ss_pred CCceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCc-cCCccccccccCC
Q 044539 127 RENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLI-RYPSEVENLFLLR 204 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~-~lP~~I~~L~~Lr 204 (217)
....+.+.+..+... +.....++ +|++|.+.++.-. ...+ ..+.++++|++|+|++|.+. ..|..++.+++|+
T Consensus 65 l~~L~~L~l~~n~~~~~~~l~~l~-~L~~L~l~~n~l~---~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNYNPISGLS-NLERLRIMGKDVT---SDKI-PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp CTTCSEEEEESCCCSCCGGGTTCT-TCCEEEEECTTCB---GGGS-CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred CCCCCEEEccCCCCCcchhhhcCC-CCCEEEeECCccC---cccC-hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 456777777776544 44566778 8888888775532 2233 66788888999999988876 4778888999999
Q ss_pred EEeeCCCC-cccC
Q 044539 205 YLNLNIPS-LKSL 216 (217)
Q Consensus 205 yL~L~~t~-i~~L 216 (217)
+|++++|. ++.+
T Consensus 140 ~L~L~~n~~i~~~ 152 (197)
T 4ezg_A 140 SIDLSYNGAITDI 152 (197)
T ss_dssp EEECCSCTBCCCC
T ss_pred EEEccCCCCcccc
Confidence 99998887 6654
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.14 E-value=6.9e-06 Score=62.12 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=43.3
Q ss_pred CceeEEEEeCCCCc-cc--cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccccC
Q 044539 128 ENVKRFTAHGNLND-FE--FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~--~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~L 203 (217)
.+.+.+.+..+... .+ ....++ +|+.|.+.++.- ....+ ..+.++++|++|+|+++.+..+|.. ++.+.+|
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l---~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLT-QLKELALNTNQL---QSLPD-GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC---CCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCcCEEECCCCcCCccCHhHhcCcc-CCCEEEcCCCcC---cccCH-hHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 34556665554433 11 134455 666666655432 12222 4456666666666666666655544 5566666
Q ss_pred CEEeeCCCCc
Q 044539 204 RYLNLNIPSL 213 (217)
Q Consensus 204 ryL~L~~t~i 213 (217)
++|+++++.+
T Consensus 151 ~~L~l~~N~~ 160 (208)
T 2o6s_A 151 QYIWLHDNPW 160 (208)
T ss_dssp CEEECCSCCB
T ss_pred cEEEecCCCe
Confidence 6666666543
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.14 E-value=6.1e-06 Score=67.15 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=46.9
Q ss_pred CceeEEEEeCCCCc-cc-cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCC-CccCCccccc-----
Q 044539 128 ENVKRFTAHGNLND-FE-FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLV-LIRYPSEVEN----- 199 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~-~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~-i~~lP~~I~~----- 199 (217)
...+++.+..+... ++ ....++ +|++|.+.++... .+| ..+.++++|++|+|++|. +..+|..++.
T Consensus 104 ~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~Ls~n~l~----~lp-~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 104 SHLQHMTIDAAGLMELPDTMQQFA-GLETLTLARNPLR----ALP-ASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp TTCSEEEEESSCCCCCCSCGGGGT-TCSEEEEESCCCC----CCC-GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred CCCCEEECCCCCccchhHHHhccC-CCCEEECCCCccc----cCc-HHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 34556666555443 22 244556 6666666655431 334 556666666666666654 4456665554
Q ss_pred ----cccCCEEeeCCCCcccCC
Q 044539 200 ----LFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 200 ----L~~LryL~L~~t~i~~L~ 217 (217)
+.+|++|+|+++.++.+|
T Consensus 178 ~~~~l~~L~~L~L~~n~l~~lp 199 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIRSLP 199 (328)
T ss_dssp CEEESTTCCEEEEEEECCCCCC
T ss_pred hhccCCCCCEEECcCCCcCcch
Confidence 666666666666665543
No 32
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=3.8e-06 Score=73.54 Aligned_cols=82 Identities=20% Similarity=-0.018 Sum_probs=54.2
Q ss_pred CceeEEEEeCCCCc-c-ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC--CccccccccC
Q 044539 128 ENVKRFTAHGNLND-F-EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY--PSEVENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~-~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l--P~~I~~L~~L 203 (217)
...+.|.+..+... + ..+..++ +|++|.+.++.-. .+ +.++++++|++|+|++|.+..+ |..++.|++|
T Consensus 463 ~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~Ls~N~l~----~l--p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 463 LLVTHLDLSHNRLRALPPALAALR-CLEVLQASDNALE----NV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp TTCCEEECCSSCCCCCCGGGGGCT-TCCEEECCSSCCC----CC--GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred ccCcEeecCcccccccchhhhcCC-CCCEEECCCCCCC----CC--cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence 34566666665543 2 2355566 7777777665432 13 3567777788888887777766 7778888888
Q ss_pred CEEeeCCCCcccC
Q 044539 204 RYLNLNIPSLKSL 216 (217)
Q Consensus 204 ryL~L~~t~i~~L 216 (217)
++|+|+++.++.+
T Consensus 536 ~~L~L~~N~l~~~ 548 (567)
T 1dce_A 536 VLLNLQGNSLCQE 548 (567)
T ss_dssp CEEECTTSGGGGS
T ss_pred CEEEecCCcCCCC
Confidence 8888887777654
No 33
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.13 E-value=6.7e-06 Score=64.14 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=44.0
Q ss_pred CceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-cccccccC
Q 044539 128 ENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~L 203 (217)
.+.+.+.+..+... . .....++ +|++|.+.++.-. ...+ ..+..++.|++|+|+++.+..+|. .++.+.+|
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~---~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLK---SLPS-GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCC---CCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCEEECCCCcccccChhHhcccC-CCCEEEcCCCcCC---CcCh-hHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 44566666555443 1 1234455 6666666554321 2222 345556666666666666555554 35556666
Q ss_pred CEEeeCCCCcccC
Q 044539 204 RYLNLNIPSLKSL 216 (217)
Q Consensus 204 ryL~L~~t~i~~L 216 (217)
++|+|+++.++.+
T Consensus 158 ~~L~L~~N~l~~~ 170 (251)
T 3m19_A 158 QTLSLSTNQLQSV 170 (251)
T ss_dssp CEEECCSSCCSCC
T ss_pred CEEECCCCcCCcc
Confidence 6666666555443
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.11 E-value=4.7e-06 Score=67.84 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=24.3
Q ss_pred hhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCC
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPS 212 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~ 212 (217)
..+.++++|++|+|++|.+..+|+.++.+.+|++|+|++|+
T Consensus 200 ~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCT
T ss_pred HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCc
Confidence 44555566666666666655566566666666666666544
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.09 E-value=7.1e-06 Score=66.51 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=63.2
Q ss_pred CceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCC
Q 044539 128 ENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLR 204 (217)
Q Consensus 128 ~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lr 204 (217)
...+.+.+..+... ......++ +|+.|.+.++.-. ...+ ..+..++.|+.|+|+++.+..+|..++.+.+|+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~---~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 266 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSIS---AVDN-GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 266 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCC---EECT-TTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCc---eeCh-hhccCCCCCCEEECCCCcCccCChhhccCCCcC
Confidence 44556666555443 22355677 8888888765532 2333 578889999999999999999999999999999
Q ss_pred EEeeCCCCcccCC
Q 044539 205 YLNLNIPSLKSLL 217 (217)
Q Consensus 205 yL~L~~t~i~~L~ 217 (217)
+|+++++.|+.++
T Consensus 267 ~L~l~~N~i~~~~ 279 (330)
T 1xku_A 267 VVYLHNNNISAIG 279 (330)
T ss_dssp EEECCSSCCCCCC
T ss_pred EEECCCCcCCccC
Confidence 9999999988753
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.08 E-value=7e-06 Score=69.58 Aligned_cols=86 Identities=21% Similarity=0.109 Sum_probs=62.3
Q ss_pred CCCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccc
Q 044539 126 LRENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLF 201 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~ 201 (217)
.+...+.|.+..+... ...+..++ +|+.|.+.++.. ....+ ..|.++++|++|+|+++.+..+|.. ++.|.
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i---~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSI---RQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC---CEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred CCCCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCcc---CCcCh-hhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 4567788888877655 23356778 888888877643 23344 6778888888888888888777754 77788
Q ss_pred cCCEEeeCCCCcccC
Q 044539 202 LLRYLNLNIPSLKSL 216 (217)
Q Consensus 202 ~LryL~L~~t~i~~L 216 (217)
+|++|+|+++.++.+
T Consensus 148 ~L~~L~L~~N~l~~~ 162 (452)
T 3zyi_A 148 KLRELWLRNNPIESI 162 (452)
T ss_dssp TCCEEECCSCCCCEE
T ss_pred CCCEEECCCCCccee
Confidence 888888888877654
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.07 E-value=1.3e-05 Score=63.27 Aligned_cols=65 Identities=23% Similarity=0.196 Sum_probs=38.5
Q ss_pred CCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-cccccccCCEEeeCCCCcccC
Q 044539 147 HFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 147 ~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~LryL~L~~t~i~~L 216 (217)
.++ +|++|.+.++.- ....+ ..+..+++|++|+|+++.+..+|. .++.+.+|++|+|+++.++.+
T Consensus 83 ~l~-~L~~L~l~~n~l---~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 83 ELK-NLETLWVTDNKL---QALPI-GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp SCT-TCCEEECCSSCC---CCCCT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCC-CCCEEECCCCcC---CcCCH-hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 344 555555544332 11222 456667777777777777665553 356777777777777776654
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.07 E-value=6.3e-06 Score=71.48 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=23.9
Q ss_pred hhhcCCCceeEEEeCCCCCccCCc-cccccccCCEEeeCCCCcc
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPS-EVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~LryL~L~~t~i~ 214 (217)
..|.++++|++|+|+++.+..+|. .+++|.+|++|+++++.++
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccc
Confidence 345555555555555555555543 4556666666666655554
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.07 E-value=6.7e-06 Score=69.41 Aligned_cols=85 Identities=15% Similarity=0.015 Sum_probs=56.0
Q ss_pred CCCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-Cccccccc
Q 044539 126 LRENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLF 201 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~ 201 (217)
.+...+++.+..+... ......++ +|++|.+.++... ..+.+ ..+.++++|++|+|+++.+..+ |..+++|.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~~~--~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPG--LVIRN-NTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCT-TCCEEECCCCSTT--CEECT-TTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccCcCChhHhccCc-cccEEECcCCccc--ceECc-ccccccccCCEEeCCCCccCccChhhccCcc
Confidence 3466778887776654 22356677 8888877765431 12223 5677777777777777776644 66777777
Q ss_pred cCCEEeeCCCCcc
Q 044539 202 LLRYLNLNIPSLK 214 (217)
Q Consensus 202 ~LryL~L~~t~i~ 214 (217)
+|++|+|++|.++
T Consensus 104 ~L~~L~L~~n~l~ 116 (455)
T 3v47_A 104 NLEVLTLTQCNLD 116 (455)
T ss_dssp TCCEEECTTSCCB
T ss_pred cCCEEeCCCCCCC
Confidence 7777777777665
No 40
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.06 E-value=5.3e-06 Score=61.21 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=64.8
Q ss_pred CCceeEEEEeCCCCc-ccccc-CCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccc-cccccC
Q 044539 127 RENVKRFTAHGNLND-FEFLD-HFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEV-ENLFLL 203 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~~~~-~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I-~~L~~L 203 (217)
+...+.+.+..+... ++... ..+ +|+.|.+.++.-. .+ ..+..+++|++|+|++|.+..+|+.+ +.+++|
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~-~L~~L~Ls~N~l~----~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIR----KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTT-CCSEEECCSSCCC----EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCC-CCCEEECCCCCCC----cc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 566788888776554 33233 345 8999998876542 12 46788999999999999999999776 899999
Q ss_pred CEEeeCCCCcccCC
Q 044539 204 RYLNLNIPSLKSLL 217 (217)
Q Consensus 204 ryL~L~~t~i~~L~ 217 (217)
++|+|+++.|+.+|
T Consensus 91 ~~L~L~~N~i~~~~ 104 (176)
T 1a9n_A 91 TELILTNNSLVELG 104 (176)
T ss_dssp CEEECCSCCCCCGG
T ss_pred CEEECCCCcCCcch
Confidence 99999999987653
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.06 E-value=7.7e-06 Score=70.70 Aligned_cols=84 Identities=20% Similarity=0.084 Sum_probs=52.9
Q ss_pred CCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-cccccc
Q 044539 127 RENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFL 202 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~ 202 (217)
+...+++.+..+... ......++ +||+|.+.++.. ....+ ..+.++++|++|+|+++.+..+|.. +++|.+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i---~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRI---NTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCC---CEECT-TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCCccEEECcCCccCccChhhhhcCC-cccEEECCCCCc---CccCh-hhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 356677777766544 12355667 777777766542 22333 5566777777777777776666654 777777
Q ss_pred CCEEeeCCCCccc
Q 044539 203 LRYLNLNIPSLKS 215 (217)
Q Consensus 203 LryL~L~~t~i~~ 215 (217)
|++|+++++.++.
T Consensus 100 L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 100 LKYLNLMGNPYQT 112 (549)
T ss_dssp CCEEECTTCCCSS
T ss_pred CcEEECCCCcccc
Confidence 7777777766653
No 42
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.05 E-value=6.8e-06 Score=59.98 Aligned_cols=87 Identities=16% Similarity=0.007 Sum_probs=68.6
Q ss_pred CCceeEEEEeCCCCc--ccccc-CCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc----cccc
Q 044539 127 RENVKRFTAHGNLND--FEFLD-HFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS----EVEN 199 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~--~~~~~-~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~----~I~~ 199 (217)
....+.+.+..+... .+... .++ +|+.|.+.++.-. ... .. ..+..++.|++|+|++|.+..+|. .++.
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~-~~~-~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLP-NLTHLNLSGNKLK-DIS-TL-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKL 145 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCT-TCCEEECBSSSCC-SSG-GG-GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCC-CCCEEeccCCccC-cch-hH-HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh
Confidence 456788999887765 33333 488 9999999887543 111 11 578899999999999999998887 8999
Q ss_pred cccCCEEeeCCCCcccCC
Q 044539 200 LFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 200 L~~LryL~L~~t~i~~L~ 217 (217)
+++|++|+++++.+.++|
T Consensus 146 l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 146 LPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CSSCCEETTEETTSCBCC
T ss_pred CccCcEecCCCCChhhcc
Confidence 999999999999988765
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.05 E-value=6.3e-06 Score=66.54 Aligned_cols=82 Identities=15% Similarity=0.065 Sum_probs=49.8
Q ss_pred CceeEEEEeC-CCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCc-cCCcccccccc
Q 044539 128 ENVKRFTAHG-NLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLI-RYPSEVENLFL 202 (217)
Q Consensus 128 ~~~r~ls~~~-~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~-~lP~~I~~L~~ 202 (217)
...+.+.+.. +... ...+..++ +|+.|.+.++.. ...+| ..+.++++|++|+|+++.+. .+|..++.+.+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l---~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNV---SGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECC---EEECC-GGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred CCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCee---CCcCC-HHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 4455555552 2221 22344556 666666655432 12344 56777777777777777766 67777777777
Q ss_pred CCEEeeCCCCcc
Q 044539 203 LRYLNLNIPSLK 214 (217)
Q Consensus 203 LryL~L~~t~i~ 214 (217)
|++|+++++.++
T Consensus 151 L~~L~L~~N~l~ 162 (313)
T 1ogq_A 151 LVGITFDGNRIS 162 (313)
T ss_dssp CCEEECCSSCCE
T ss_pred CCeEECcCCccc
Confidence 777777777765
No 44
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.05 E-value=1e-05 Score=66.63 Aligned_cols=85 Identities=21% Similarity=0.180 Sum_probs=54.0
Q ss_pred CceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccc----ccc
Q 044539 128 ENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEV----ENL 200 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I----~~L 200 (217)
.+.++|.+..+... . ..+..++ +|+.|.+.++.. ....+ ..|..+++|+.|+|+++.+..+|..+ +.+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i---~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQ-ALEVLLLYNNHI---VVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC---CEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----C
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCc-CCCEEECCCCcc---cEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccC
Confidence 34556666555443 1 1234556 667766665543 22334 56777888888888888888888766 568
Q ss_pred ccCCEEeeCCCCcccCC
Q 044539 201 FLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 201 ~~LryL~L~~t~i~~L~ 217 (217)
.+|++|+|+++.++.+|
T Consensus 163 ~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 163 PKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp TTCCEEECCSSCCCCCC
T ss_pred CcCCEEECCCCCCCccC
Confidence 88888888888877654
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.05 E-value=1e-05 Score=64.74 Aligned_cols=67 Identities=18% Similarity=-0.013 Sum_probs=40.5
Q ss_pred cCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccccCCEEeeCCCCcccCC
Q 044539 146 DHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 146 ~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~LryL~L~~t~i~~L~ 217 (217)
..++ +|+.|.+.++.- ....+ ..|..+++|+.|+|+++.+..+|.. ++.+.+|++|+|++++++.+|
T Consensus 97 ~~l~-~L~~L~l~~N~l---~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 97 QTLP-ALTVLDVSFNRL---TSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp TTCT-TCCEEECCSSCC---CCCCS-STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred ccCC-CCCEEECCCCcC---cccCH-HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 3455 566665554432 12333 4566777777777777777666654 356777777777777766553
No 46
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.04 E-value=1.3e-05 Score=59.00 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=68.2
Q ss_pred CCCceeEEEEeCCCCc-cc--cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccc
Q 044539 126 LRENVKRFTAHGNLND-FE--FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLF 201 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~-~~--~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~ 201 (217)
.+...+++.+..+... .+ ....++ +|++|.+.++.- ....+ ..+..+++|++|+|+++.+..+|.. ++.+.
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l---~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQI---QSLPD-GVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCC---CCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcc---eEeCh-hHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence 3467888998877654 22 245678 999999887653 23444 6688999999999999999988875 68999
Q ss_pred cCCEEeeCCCCcccCC
Q 044539 202 LLRYLNLNIPSLKSLL 217 (217)
Q Consensus 202 ~LryL~L~~t~i~~L~ 217 (217)
+|++|+++++.++.+|
T Consensus 101 ~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 101 QLKELALDTNQLKSVP 116 (177)
T ss_dssp TCCEEECCSSCCSCCC
T ss_pred ccCEEECcCCcceEeC
Confidence 9999999999988764
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.04 E-value=7.2e-06 Score=72.84 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=45.1
Q ss_pred CCceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-ccccccc
Q 044539 127 RENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLFL 202 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~ 202 (217)
+.+++++.+..+... . ..+..++ +|++|.+.++.- ....+ ..+.++++|++|+|+++.+..+|. .++++.+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l---~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYS-QLTSLDVGFNTI---SKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGT-TCSEEECCSSCC---CCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCC-cCcEEECCCCcc---CccCH-HHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 456777777665543 1 2245566 777776655432 12223 445555555555555555555554 3555555
Q ss_pred CCEEeeCCCCccc
Q 044539 203 LRYLNLNIPSLKS 215 (217)
Q Consensus 203 LryL~L~~t~i~~ 215 (217)
|++|+|+++.++.
T Consensus 99 L~~L~L~~n~l~~ 111 (680)
T 1ziw_A 99 LTELHLMSNSIQK 111 (680)
T ss_dssp CSEEECCSSCCCC
T ss_pred CCEEECCCCccCc
Confidence 5555555555443
No 48
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.04 E-value=4.2e-06 Score=59.90 Aligned_cols=83 Identities=23% Similarity=0.231 Sum_probs=64.7
Q ss_pred CCceeEEEEeCCCCc---cc-cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCcc-CCccccccc
Q 044539 127 RENVKRFTAHGNLND---FE-FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIR-YPSEVENLF 201 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~---~~-~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~-lP~~I~~L~ 201 (217)
+.+.+++.+..+... .+ ....++ +++.|.+.++.-. .. ..+..+++|++|+|++|.+.. +|..++.++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~---~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLT---SI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCC---CC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCC---Cc---hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 456777777766543 22 246778 9999999876542 12 467889999999999999887 888888899
Q ss_pred cCCEEeeCCCCcccC
Q 044539 202 LLRYLNLNIPSLKSL 216 (217)
Q Consensus 202 ~LryL~L~~t~i~~L 216 (217)
+|++|+++++.++.+
T Consensus 89 ~L~~L~ls~N~i~~~ 103 (149)
T 2je0_A 89 NLTHLNLSGNKIKDL 103 (149)
T ss_dssp TCCEEECTTSCCCSH
T ss_pred CCCEEECCCCcCCCh
Confidence 999999999998764
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.03 E-value=1.1e-05 Score=66.81 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=19.9
Q ss_pred hhcCCCceeEEEeCCCCCccCCccc-cccccCCEEeeCCCCcc
Q 044539 173 ICKMFNFLRVLDLGSLVLIRYPSEV-ENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 173 ~~~~l~~LrvLdL~~~~i~~lP~~I-~~L~~LryL~L~~t~i~ 214 (217)
.+.++++|++|+|+++.+..+|..+ +++++|++|+++++.++
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC
Confidence 3444445555555554444444442 44445555555444443
No 50
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.03 E-value=1.3e-05 Score=64.02 Aligned_cols=85 Identities=18% Similarity=0.020 Sum_probs=59.0
Q ss_pred CceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccc-cccccC
Q 044539 128 ENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEV-ENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I-~~L~~L 203 (217)
.+.+.+.+..+... . ..+..++ +|+.|.+.++.-. ...+ ..+..+++|+.|+|+++++..+|..+ ..|.+|
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~---~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNELK---TLPP-GLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCT-TCCEEECTTSCCC---CCCT-TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred CCCCEEECCCCcCcccCHHHHcCCC-CCCEEECCCCCCC---ccCh-hhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 45677777766554 2 2355677 8888888766432 2333 56777888888888888888887654 568888
Q ss_pred CEEeeCCCCcccCC
Q 044539 204 RYLNLNIPSLKSLL 217 (217)
Q Consensus 204 ryL~L~~t~i~~L~ 217 (217)
++|+|+++.++.+|
T Consensus 175 ~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 175 DTLLLQENSLYTIP 188 (290)
T ss_dssp CEEECCSSCCCCCC
T ss_pred CEEECCCCcCCccC
Confidence 88888888777654
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.02 E-value=1.2e-05 Score=67.80 Aligned_cols=86 Identities=19% Similarity=0.116 Sum_probs=62.2
Q ss_pred CCCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-cccccc
Q 044539 126 LRENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLF 201 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~ 201 (217)
.+...+.+.+..+... ...+..++ +|+.|.+.++.- ..+.+ ..|.++++|+.|+|+++.+..+|. .++.+.
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i---~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHI---RTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCC---CEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcC---CccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 4566788888777655 23456778 888888877653 22334 677888888888888888887775 577888
Q ss_pred cCCEEeeCCCCcccC
Q 044539 202 LLRYLNLNIPSLKSL 216 (217)
Q Consensus 202 ~LryL~L~~t~i~~L 216 (217)
+|++|+|+++.++.+
T Consensus 137 ~L~~L~L~~N~i~~~ 151 (440)
T 3zyj_A 137 KLKELWLRNNPIESI 151 (440)
T ss_dssp SCCEEECCSCCCCEE
T ss_pred cCceeeCCCCccccc
Confidence 888888888877654
No 52
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.02 E-value=7.6e-06 Score=66.77 Aligned_cols=81 Identities=16% Similarity=0.020 Sum_probs=47.9
Q ss_pred ceeEEEEeC-CCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCC
Q 044539 129 NVKRFTAHG-NLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLR 204 (217)
Q Consensus 129 ~~r~ls~~~-~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lr 204 (217)
+.+.|.+.. +... + ..+..++ +|+.|.+.++.- ....+ ..|.++++|+.|+|+++.+..+|..+.....|+
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l---~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGL---RFVAP-DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCC---CEECT-TGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCcc---ceeCH-HHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 456666653 4433 2 2245566 777776665542 22334 566677777777777777776766555444477
Q ss_pred EEeeCCCCcc
Q 044539 205 YLNLNIPSLK 214 (217)
Q Consensus 205 yL~L~~t~i~ 214 (217)
+|+|.++.+.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 7777766554
No 53
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.01 E-value=9.8e-06 Score=60.71 Aligned_cols=83 Identities=16% Similarity=0.071 Sum_probs=66.5
Q ss_pred CCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-Ccccccccc
Q 044539 127 RENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLFL 202 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~ 202 (217)
....+.|.+..+... ...+..++ +|+.|.+.++.- ....+ ..+..++.|++|+|+++.+..+ |..++.+.+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l---~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENKI---KEISN-KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCCC---CEECS-SSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECCCCcC---CccCH-HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC
Confidence 456788888887765 23466788 999999988764 23444 6688999999999999998854 788999999
Q ss_pred CCEEeeCCCCcc
Q 044539 203 LRYLNLNIPSLK 214 (217)
Q Consensus 203 LryL~L~~t~i~ 214 (217)
|++|+|+++.+.
T Consensus 128 L~~L~L~~N~l~ 139 (192)
T 1w8a_A 128 LTSLNLASNPFN 139 (192)
T ss_dssp CCEEECTTCCBC
T ss_pred CCEEEeCCCCcc
Confidence 999999998764
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.01 E-value=1.7e-05 Score=62.51 Aligned_cols=66 Identities=23% Similarity=0.135 Sum_probs=39.7
Q ss_pred cCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccccCCEEeeCCCCcccC
Q 044539 146 DHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 146 ~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~LryL~L~~t~i~~L 216 (217)
..++ +|++|.+.++.- ....+ ..+..++.|+.|+|+++.+..+|.. ++.+.+|++|+|+++.++.+
T Consensus 130 ~~l~-~L~~L~Ls~n~l---~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 130 DSLT-KLTYLSLGYNEL---QSLPK-GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp TTCT-TCCEEECCSSCC---CCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcCc-CCCEEECCCCcC---CccCH-hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 3445 555555554432 12222 4466677777777777776666643 66777777777777766654
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.00 E-value=1.8e-05 Score=62.71 Aligned_cols=66 Identities=21% Similarity=0.124 Sum_probs=38.4
Q ss_pred cCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccccCCEEeeCCCCcccC
Q 044539 146 DHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 146 ~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~LryL~L~~t~i~~L 216 (217)
..++ +|++|.+.++.. ....+ ..+.++++|++|+|+++.+..+|.. ++.+.+|++|+|+++.++.+
T Consensus 102 ~~l~-~L~~L~l~~n~l---~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 102 HGLG-RLHTLHLDRCGL---QELGP-GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp TTCT-TCCEEECTTSCC---CCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cCCc-CCCEEECCCCcC---CEECH-hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 3445 555555544332 12223 4566667777777777666666543 66677777777777666543
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.99 E-value=1.5e-05 Score=63.13 Aligned_cols=85 Identities=21% Similarity=0.170 Sum_probs=52.4
Q ss_pred CceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-CccccccccC
Q 044539 128 ENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~L 203 (217)
.+.+++.+..+... ......++ +|++|.+.++.. .....+ ..+..+++|+.|+|+++.+..+ |..++.+.+|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~--l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQ--LRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTT--CCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCC--ccccCH-HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 34556665554433 12244556 666666665531 112223 5677778888888888777655 4567778888
Q ss_pred CEEeeCCCCcccC
Q 044539 204 RYLNLNIPSLKSL 216 (217)
Q Consensus 204 ryL~L~~t~i~~L 216 (217)
++|+++++.++.+
T Consensus 132 ~~L~l~~n~l~~~ 144 (285)
T 1ozn_A 132 QYLYLQDNALQAL 144 (285)
T ss_dssp CEEECCSSCCCCC
T ss_pred CEEECCCCccccc
Confidence 8888888777654
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.99 E-value=1.1e-05 Score=62.41 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=20.6
Q ss_pred hhcCCCceeEEEeCCCCCccCCccccccccCC---EEeeCCC-Ccc
Q 044539 173 ICKMFNFLRVLDLGSLVLIRYPSEVENLFLLR---YLNLNIP-SLK 214 (217)
Q Consensus 173 ~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lr---yL~L~~t-~i~ 214 (217)
.|..+++|+.|+|+++.+..+|+ ++.+.+|+ +|+++++ .++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchh
Confidence 34445555555555555555554 44444444 5555555 443
No 58
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.99 E-value=1.1e-05 Score=66.39 Aligned_cols=84 Identities=15% Similarity=0.023 Sum_probs=48.4
Q ss_pred ceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-CccccccccCC
Q 044539 129 NVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLFLLR 204 (217)
Q Consensus 129 ~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~Lr 204 (217)
+.+.|.+..+... . ..+..++ +|+.|.+.++.- ....+ ..|..+.+|++|+|+++.+..+ |..++.|.+|+
T Consensus 65 ~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l---~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 65 NLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHL---HTLDE-FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC---CEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcC---CcCCH-HHhCCCcCCCEEECCCCcccEECHHHhCCcccCC
Confidence 3445555444433 1 1234455 666665555432 22233 4566777777777777776644 45677777777
Q ss_pred EEeeCCCCcccCC
Q 044539 205 YLNLNIPSLKSLL 217 (217)
Q Consensus 205 yL~L~~t~i~~L~ 217 (217)
+|+|+++.++.+|
T Consensus 140 ~L~L~~N~l~~l~ 152 (361)
T 2xot_A 140 KLYLSQNQISRFP 152 (361)
T ss_dssp EEECCSSCCCSCC
T ss_pred EEECCCCcCCeeC
Confidence 7777777776553
No 59
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.99 E-value=1.5e-05 Score=64.89 Aligned_cols=76 Identities=21% Similarity=0.137 Sum_probs=41.4
Q ss_pred CceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEE
Q 044539 128 ENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYL 206 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL 206 (217)
.+.+++.+..+... .+....++ +|++|.+.++... .+ ..+.++++|++|+|+++.+..+|. ++.+.+|++|
T Consensus 66 ~~L~~L~l~~n~i~~~~~~~~l~-~L~~L~L~~n~i~----~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISPLSNLV-KLTNLYIGTNKIT----DI--SALQNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCC----CC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred CCccEEEccCCccccchhhhcCC-cCCEEEccCCccc----Cc--hHHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 44555555554432 22344555 6666665554321 12 335566666666666666665555 6666666666
Q ss_pred eeCCC
Q 044539 207 NLNIP 211 (217)
Q Consensus 207 ~L~~t 211 (217)
++++|
T Consensus 138 ~l~~n 142 (347)
T 4fmz_A 138 NLGAN 142 (347)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 66665
No 60
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.99 E-value=8.8e-06 Score=67.49 Aligned_cols=86 Identities=22% Similarity=0.125 Sum_probs=68.3
Q ss_pred CCceeEEEEeCCCCc-ccc--ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCC-cccccccc
Q 044539 127 RENVKRFTAHGNLND-FEF--LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYP-SEVENLFL 202 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~~--~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP-~~I~~L~~ 202 (217)
....|++.+..+... ++. ...++ +|++|.+.++.- ....+ ..+..+++|++|+|+++.+..+| ..++.+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~-~L~~L~L~~n~i---~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQI---EEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCC-CCSEEECTTSCC---CEECT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccc-cCcEEECCCCcc---cccCh-hhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 467888998877654 332 45688 999999987653 23344 68899999999999999988775 55899999
Q ss_pred CCEEeeCCCCcccCC
Q 044539 203 LRYLNLNIPSLKSLL 217 (217)
Q Consensus 203 LryL~L~~t~i~~L~ 217 (217)
|++|+|+++.++.+|
T Consensus 119 L~~L~L~~n~l~~l~ 133 (390)
T 3o6n_A 119 LTVLVLERNDLSSLP 133 (390)
T ss_dssp CCEEECCSSCCCCCC
T ss_pred CCEEECCCCccCcCC
Confidence 999999999988765
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.98 E-value=1.2e-05 Score=69.92 Aligned_cols=83 Identities=16% Similarity=0.060 Sum_probs=49.8
Q ss_pred CCceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccC
Q 044539 127 RENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLL 203 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~L 203 (217)
+...+++.+..+... . ..+..++ +||+|.+.++.- ....+ ..|.++++|++|||+++.+..+|.. .|.+|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l---~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRI---RSLDF-HVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCC---CEECT-TTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCCcCEEECCCCCccccChhhhccCC-CccEEECCCCCC---CcCCH-HHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 356677777766544 1 2355667 777777766542 22333 5566666666666666666666655 56666
Q ss_pred CEEeeCCCCcccC
Q 044539 204 RYLNLNIPSLKSL 216 (217)
Q Consensus 204 ryL~L~~t~i~~L 216 (217)
++|+|+++.++.+
T Consensus 124 ~~L~Ls~N~l~~l 136 (562)
T 3a79_B 124 RHLDLSFNDFDVL 136 (562)
T ss_dssp SEEECCSSCCSBC
T ss_pred CEEECCCCCcccc
Confidence 6666666655543
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.98 E-value=1.4e-05 Score=70.17 Aligned_cols=65 Identities=17% Similarity=0.049 Sum_probs=29.3
Q ss_pred ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccc-cccccCCEEeeCCCCcc
Q 044539 145 LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEV-ENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 145 ~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I-~~L~~LryL~L~~t~i~ 214 (217)
+..++ +|++|.+.++.. ....+ ..|+.+++|++|+|++|.+..+|..+ +++.+|++|+|++|.++
T Consensus 95 ~~~l~-~L~~L~L~~n~l---~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 95 FAYAH-TIQKLYMGFNAI---RYLPP-HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp TTTCT-TCCEEECCSSCC---CCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hcCCC-CCCEEECCCCcC---CCCCH-HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence 33444 555555544332 11222 33444555555555555544444442 44555555555544443
No 63
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.98 E-value=1.8e-05 Score=59.38 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=66.3
Q ss_pred CCceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-cccccc
Q 044539 127 RENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFL 202 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~ 202 (217)
....+.|.+..+... . ..+..++ +|++|.+.++.- ....+ ..|..++.|++|+|+++.+..+|.. +..|.+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~l---~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILSYNRL---RCIPP-RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC---CBCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCC-CCCEEECCCCcc---CEeCH-HHhCCCCCCCEEECCCCCCCeeChhhhhcCcc
Confidence 456788888877665 2 2366788 999999987764 23444 6799999999999999999999874 789999
Q ss_pred CCEEeeCCCCcc
Q 044539 203 LRYLNLNIPSLK 214 (217)
Q Consensus 203 LryL~L~~t~i~ 214 (217)
|++|+|+++.+.
T Consensus 128 L~~L~L~~N~~~ 139 (193)
T 2wfh_A 128 LSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCEE
T ss_pred ccEEEeCCCCee
Confidence 999999998753
No 64
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.97 E-value=3.2e-06 Score=76.16 Aligned_cols=83 Identities=16% Similarity=0.082 Sum_probs=68.3
Q ss_pred CCceeEEEEeCCCCc-c-ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCC
Q 044539 127 RENVKRFTAHGNLND-F-EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLR 204 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~-~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lr 204 (217)
....+.|.+..+... + ..+..++ +|+.|.+.++.-. .+| ..+.++++|++|+|++|.+..+|.+|++|.+|+
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~Ls~N~l~----~lp-~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLS-NLRVLDLSHNRLT----SLP-AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQ 319 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGT-TCCEEECTTSCCS----SCC-SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCC
T ss_pred CCCCCEEEeeCCcCcccChhhhCCC-CCCEEeCcCCcCC----ccC-hhhcCCCCCCEEECCCCCCCccChhhhcCCCcc
Confidence 345677777766654 3 3366788 9999999887642 456 788999999999999999999999999999999
Q ss_pred EEeeCCCCccc
Q 044539 205 YLNLNIPSLKS 215 (217)
Q Consensus 205 yL~L~~t~i~~ 215 (217)
+|+|+++.++.
T Consensus 320 ~L~L~~N~l~~ 330 (727)
T 4b8c_D 320 FLGVEGNPLEK 330 (727)
T ss_dssp CEECTTSCCCS
T ss_pred EEeCCCCccCC
Confidence 99999999874
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.97 E-value=8.6e-06 Score=65.74 Aligned_cols=82 Identities=10% Similarity=0.029 Sum_probs=38.3
Q ss_pred CceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCc-cCCccccccc-c
Q 044539 128 ENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLI-RYPSEVENLF-L 202 (217)
Q Consensus 128 ~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~-~lP~~I~~L~-~ 202 (217)
...+++.+..+... ......++ +|++|.+.++.. ...+| ..+..+++|++|+|+++.+. .+|..++.+. +
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l---~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~ 175 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNAL---SGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGGGCT-TCCEEECCSSEE---ESCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred CCCCEEECcCCeeCCcCCHHHhCCC-CCCEEeCCCCcc---CCcCC-hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhc
Confidence 33445555444332 11233445 555555544321 11233 44555555555555555544 5555555554 5
Q ss_pred CCEEeeCCCCcc
Q 044539 203 LRYLNLNIPSLK 214 (217)
Q Consensus 203 LryL~L~~t~i~ 214 (217)
|++|+++++.++
T Consensus 176 L~~L~L~~N~l~ 187 (313)
T 1ogq_A 176 FTSMTISRNRLT 187 (313)
T ss_dssp CCEEECCSSEEE
T ss_pred CcEEECcCCeee
Confidence 555555555443
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.97 E-value=6.4e-06 Score=66.87 Aligned_cols=84 Identities=19% Similarity=0.101 Sum_probs=61.9
Q ss_pred ceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCE
Q 044539 129 NVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRY 205 (217)
Q Consensus 129 ~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lry 205 (217)
..+.+.+..+... ......++ +|+.|.+.++.- ....+ ..+..++.|+.|+|+++.+..+|..++.+++|++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~N~l---~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQI---RMIEN-GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 268 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCT-TCSCCBCCSSCC---CCCCT-TGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCE
T ss_pred CCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcC---CcCCh-hHhhCCCCCCEEECCCCcCeecChhhhcCccCCE
Confidence 4444555444333 12355667 788887776543 22333 5788999999999999999999999999999999
Q ss_pred EeeCCCCcccCC
Q 044539 206 LNLNIPSLKSLL 217 (217)
Q Consensus 206 L~L~~t~i~~L~ 217 (217)
|+++++.++.++
T Consensus 269 L~l~~N~l~~~~ 280 (332)
T 2ft3_A 269 VYLHTNNITKVG 280 (332)
T ss_dssp EECCSSCCCBCC
T ss_pred EECCCCCCCccC
Confidence 999999988653
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.97 E-value=1.5e-05 Score=72.81 Aligned_cols=85 Identities=21% Similarity=0.136 Sum_probs=52.3
Q ss_pred CCCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-Cccccccc
Q 044539 126 LRENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLF 201 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~ 201 (217)
.+...++|.+..+... ...+..++ +||+|.+.++.. ...+.+ ..|.++++||+|+|++|.+..+ |+.+++|.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~-~L~~LdLs~n~~--~~~i~~-~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYT--PLTIDK-EAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCC-SCSEEEECTTCC--CCEECT-TTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccc-cCeEEeCCCCCC--ccccCH-HHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 4567777777776654 22355677 777777766532 112223 5566667777777776665543 56666666
Q ss_pred cCCEEeeCCCCcc
Q 044539 202 LLRYLNLNIPSLK 214 (217)
Q Consensus 202 ~LryL~L~~t~i~ 214 (217)
+|++|+|++|.++
T Consensus 98 ~L~~L~Ls~n~l~ 110 (844)
T 3j0a_A 98 HLFELRLYFCGLS 110 (844)
T ss_dssp SCCCEECTTCCCS
T ss_pred ccCEeeCcCCCCC
Confidence 6666666666554
No 68
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.96 E-value=1.4e-05 Score=67.93 Aligned_cols=83 Identities=17% Similarity=0.015 Sum_probs=45.6
Q ss_pred CCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-cccccc
Q 044539 127 RENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFL 202 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~ 202 (217)
+...+.+.+..+... ...+..++ +|+.|.+.++.. ....+ ..|.++++|++|+|+++.+..+|.. ++++.+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i---~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIV---SAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCC---CEECT-TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCCcEEECCCCccceECHhHccCCC-CCCEEECCCCcc---CEeCh-hhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 455666666665543 12345566 677776655432 12223 4555666666666666665555543 455666
Q ss_pred CCEEeeCCCCcc
Q 044539 203 LRYLNLNIPSLK 214 (217)
Q Consensus 203 LryL~L~~t~i~ 214 (217)
|++|+|+++.++
T Consensus 106 L~~L~Ls~n~i~ 117 (477)
T 2id5_A 106 LTKLDISENKIV 117 (477)
T ss_dssp CCEEECTTSCCC
T ss_pred CCEEECCCCccc
Confidence 666666655544
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.95 E-value=1e-05 Score=70.79 Aligned_cols=85 Identities=14% Similarity=-0.090 Sum_probs=47.2
Q ss_pred CCCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCcc-CCccccccc
Q 044539 126 LRENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIR-YPSEVENLF 201 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~-lP~~I~~L~ 201 (217)
.+...+++.+..+... ...+..++ +||+|.+.++.- ....+ ..|.++++|++|+|+++.+.. .|..++.+.
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i---~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLI-NLTFLDLTRCQI---YWIHE-DTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCT-TCSEEECTTCCC---CEECT-TTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCc-cceEEECCCCcc---ceeCh-hhccCccccCeeeCCCCcccccChhhhcccc
Confidence 3456677777666544 12345666 777777665532 12333 455566666666666665543 245555566
Q ss_pred cCCEEeeCCCCccc
Q 044539 202 LLRYLNLNIPSLKS 215 (217)
Q Consensus 202 ~LryL~L~~t~i~~ 215 (217)
+|++|+++++.++.
T Consensus 106 ~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 106 ALKHLFFIQTGISS 119 (606)
T ss_dssp TCCEEECTTSCCSC
T ss_pred cccEeeccccCccc
Confidence 66666665555544
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.95 E-value=9.3e-06 Score=69.83 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=40.2
Q ss_pred CceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCC
Q 044539 128 ENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLR 204 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lr 204 (217)
.+.+++.+..+... . .....++ +||+|.+.++.- ....+ ..+.++++|++|+|+++.+..+|.. .+.+|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l---~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLS-KLRILIISHNRI---QYLDI-SVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCT-TCCEEECCSSCC---CEEEG-GGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred ccccEEECCCCcccccChhhccccc-cccEEecCCCcc---CCcCh-HHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 45556666555443 1 1244555 666666555432 12223 4555555555555555555555544 455555
Q ss_pred EEeeCCCCcc
Q 044539 205 YLNLNIPSLK 214 (217)
Q Consensus 205 yL~L~~t~i~ 214 (217)
+|+|+++.++
T Consensus 94 ~L~L~~N~l~ 103 (520)
T 2z7x_B 94 HLDLSFNAFD 103 (520)
T ss_dssp EEECCSSCCS
T ss_pred EEeccCCccc
Confidence 5555555444
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.95 E-value=1.6e-05 Score=62.78 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=26.7
Q ss_pred hhhcCCCceeEEEeCCCCCccCCc-cccccccCCEEeeCCCCccc
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPS-EVENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~LryL~L~~t~i~~ 215 (217)
..+.++++|++|+++++.+..++. .++.+++|++|+++++.++.
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 445566666666666666555543 46666666666666666554
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.95 E-value=1.3e-05 Score=69.83 Aligned_cols=81 Identities=12% Similarity=-0.097 Sum_probs=62.7
Q ss_pred eEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-CccccccccCCEEee
Q 044539 131 KRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLFLLRYLNL 208 (217)
Q Consensus 131 r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~LryL~L 208 (217)
+++.+...... ++.. -.+ .++.|.+.++.- ....+ ..+.++++|++|+|+++.+..+ |+.++.|.+|++|+|
T Consensus 34 ~~l~ls~~~L~~ip~~-~~~-~L~~L~Ls~N~i---~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKD-LPP-RTKALSLSQNSI---SELRM-PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCSCCTT-SCT-TCCEEECCSSCC---CCCCG-GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCccCCCC-CCC-CcCEEECCCCCc---cccCh-hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 56666655443 3321 236 999999988764 23444 7899999999999999998866 678999999999999
Q ss_pred CCCCcccCC
Q 044539 209 NIPSLKSLL 217 (217)
Q Consensus 209 ~~t~i~~L~ 217 (217)
+++.++++|
T Consensus 108 s~N~l~~lp 116 (562)
T 3a79_B 108 SHNRLQNIS 116 (562)
T ss_dssp TTSCCCEEC
T ss_pred CCCcCCccC
Confidence 999998775
No 73
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=1.9e-05 Score=69.10 Aligned_cols=81 Identities=17% Similarity=0.044 Sum_probs=67.9
Q ss_pred ceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEe
Q 044539 129 NVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLN 207 (217)
Q Consensus 129 ~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~ 207 (217)
..+.|.+..+... ++.+..++ +|+.|.+.++.-. .+| ..++.+++|++|+|++|.++.+| .++.|++|++|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~-~L~~L~Ls~N~l~----~lp-~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLL-LVTHLDLSHNRLR----ALP-PALAALRCLEVLQASDNALENVD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGT-TCCEEECCSSCCC----CCC-GGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred CceEEEecCCCCCCCcCccccc-cCcEeecCccccc----ccc-hhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence 4667777776554 45577888 9999999887642 466 78999999999999999999999 899999999999
Q ss_pred eCCCCcccC
Q 044539 208 LNIPSLKSL 216 (217)
Q Consensus 208 L~~t~i~~L 216 (217)
|+++.++.+
T Consensus 515 Ls~N~l~~~ 523 (567)
T 1dce_A 515 LCNNRLQQS 523 (567)
T ss_dssp CCSSCCCSS
T ss_pred CCCCCCCCC
Confidence 999999876
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.94 E-value=1.8e-05 Score=62.39 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=58.0
Q ss_pred CceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCcc--CCcccccccc
Q 044539 128 ENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIR--YPSEVENLFL 202 (217)
Q Consensus 128 ~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~--lP~~I~~L~~ 202 (217)
.+.+.+.+..+... ......++ +|++|.+.++... ...+ ..+..+++|++|+|+++.+.. +|..++.+.+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~---~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLA---SLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTSCCC---CSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred cCCCEEECCCCccCccChhhhcCCc-cccEEECCCCCcc---ccCc-hhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence 45566666655443 12345566 7777776655432 2222 457888899999999988775 7888999999
Q ss_pred CCEEeeCCCCcccC
Q 044539 203 LRYLNLNIPSLKSL 216 (217)
Q Consensus 203 LryL~L~~t~i~~L 216 (217)
|++|+++++.++.+
T Consensus 151 L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 151 LEHLDLSSNKIQSI 164 (276)
T ss_dssp CCEEECCSSCCCEE
T ss_pred CCEEECCCCCCCcC
Confidence 99999998887654
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.94 E-value=9.8e-06 Score=69.67 Aligned_cols=64 Identities=16% Similarity=-0.029 Sum_probs=55.0
Q ss_pred CCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-CccccccccCCEEeeCCCCcccCC
Q 044539 149 DSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 149 ~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
+ +++.|.+.++.- ....+ ..+.++++|++|+|+++.+..+ |+.+++|.+|++|+|+++.++++|
T Consensus 21 ~-~L~~L~Ls~n~i---~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 85 (520)
T 2z7x_B 21 Q-KTTILNISQNYI---SELWT-SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85 (520)
T ss_dssp T-TCSEEECCSSCC---CCCCH-HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEE
T ss_pred c-cccEEECCCCcc---cccCh-hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecC
Confidence 6 999999988764 23444 6899999999999999998876 789999999999999999998764
No 76
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.94 E-value=1.8e-05 Score=64.04 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=56.8
Q ss_pred CCceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccC
Q 044539 127 RENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLL 203 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~L 203 (217)
+...+.+.+..+... . .....++ +|++|.+.++.- ....+ ..+..+++|++|+|+++.+..+|..+. .+|
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l---~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKI---SKISP-GAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCC---CCBCT-TTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcC---CeeCH-HHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 456677777666544 2 1355677 888887766543 22334 667788888888888888878887766 688
Q ss_pred CEEeeCCCCcccC
Q 044539 204 RYLNLNIPSLKSL 216 (217)
Q Consensus 204 ryL~L~~t~i~~L 216 (217)
++|+++++.++.+
T Consensus 124 ~~L~l~~n~l~~~ 136 (330)
T 1xku_A 124 QELRVHENEITKV 136 (330)
T ss_dssp CEEECCSSCCCBB
T ss_pred cEEECCCCccccc
Confidence 8888888777654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.93 E-value=2.3e-05 Score=61.83 Aligned_cols=84 Identities=23% Similarity=0.165 Sum_probs=56.1
Q ss_pred CceeEEEEeCCCCc-cc--cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCcc-ccccccC
Q 044539 128 ENVKRFTAHGNLND-FE--FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSE-VENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~--~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~-I~~L~~L 203 (217)
.+.+.+.+..+... .+ ....++ +|++|.+.++.- ....+ ..+..++.|+.|+|++|.+..+|.. ++.+.+|
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l---~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQL---QSLPK-GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCC---CCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCccCHHHhccCC-CCCEEECCCCcc---CccCH-HHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 45666776665544 22 145667 888887776643 22333 5567788888888888887766654 4778888
Q ss_pred CEEeeCCCCcccC
Q 044539 204 RYLNLNIPSLKSL 216 (217)
Q Consensus 204 ryL~L~~t~i~~L 216 (217)
++|+++++.++.+
T Consensus 184 ~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 184 KDLRLYQNQLKSV 196 (272)
T ss_dssp CEEECCSSCCSCC
T ss_pred CEEECCCCcCCcc
Confidence 8888888777654
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.92 E-value=2.1e-05 Score=63.29 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=60.8
Q ss_pred CCceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCE
Q 044539 127 RENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRY 205 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lry 205 (217)
....+.+.+..+... .+....++ +|+.|.+.++.-. .+ ..+..+++|+.|+|+++.+..+|. ++.+.+|++
T Consensus 62 l~~L~~L~L~~n~i~~~~~~~~l~-~L~~L~L~~n~l~----~~--~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAPLKNLT-KITELELSGNPLK----NV--SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV 133 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCC-SCCEEECCSCCCS----CC--GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred cCCCCEEEccCCcCCCChhHccCC-CCCEEEccCCcCC----Cc--hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCE
Confidence 456777777766554 33366777 8888888776542 12 457788889999999888888775 888899999
Q ss_pred EeeCCCCcccC
Q 044539 206 LNLNIPSLKSL 216 (217)
Q Consensus 206 L~L~~t~i~~L 216 (217)
|+++++.++.+
T Consensus 134 L~l~~n~l~~~ 144 (308)
T 1h6u_A 134 LYLDLNQITNI 144 (308)
T ss_dssp EECCSSCCCCC
T ss_pred EECCCCccCcC
Confidence 99988887654
No 79
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.91 E-value=1.8e-05 Score=66.73 Aligned_cols=83 Identities=19% Similarity=0.084 Sum_probs=45.1
Q ss_pred ceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-CccccccccCC
Q 044539 129 NVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLFLLR 204 (217)
Q Consensus 129 ~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~Lr 204 (217)
..+.+.+..+... ......++ +|++|.+.++.- ....+ ..+..++.|++|+|++|.+..+ |..++.+.+|+
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l---~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFL---GSIDS-RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCC---CEECG-GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCcccccChhHhcCcc-cCCEEECCCCcc---CCcCh-hHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 4455555444433 11234455 666666655432 22333 5556666666666666665544 55666666666
Q ss_pred EEeeCCCCcccC
Q 044539 205 YLNLNIPSLKSL 216 (217)
Q Consensus 205 yL~L~~t~i~~L 216 (217)
+|+|++++++.+
T Consensus 375 ~L~L~~N~l~~~ 386 (455)
T 3v47_A 375 ELALDTNQLKSV 386 (455)
T ss_dssp EEECCSSCCSCC
T ss_pred EEECCCCccccC
Confidence 666666666554
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.91 E-value=2.9e-05 Score=62.97 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=48.3
Q ss_pred CCceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccC
Q 044539 127 RENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLL 203 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~L 203 (217)
+...+.+.+..+... . .....++ +|++|.+.++.- ....+ ..+.++++|++|+|+++.+..+|..+. .+|
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l---~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKI---SKIHE-KAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC---CEECG-GGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCcc---CccCH-hHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 345677777665543 2 2355667 777777765542 22334 566777777777777776666665554 455
Q ss_pred CEEeeCCCCccc
Q 044539 204 RYLNLNIPSLKS 215 (217)
Q Consensus 204 ryL~L~~t~i~~ 215 (217)
++|+++++.++.
T Consensus 126 ~~L~l~~n~i~~ 137 (332)
T 2ft3_A 126 VELRIHDNRIRK 137 (332)
T ss_dssp CEEECCSSCCCC
T ss_pred CEEECCCCccCc
Confidence 555555555443
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.89 E-value=2.3e-05 Score=68.53 Aligned_cols=82 Identities=11% Similarity=0.007 Sum_probs=40.4
Q ss_pred CceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-cccccccC
Q 044539 128 ENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~L 203 (217)
.+.+.|.+..+... + ..+..++ +|++|.+.++.- ....+ ..|.++++|++|+|+++.+..+|+ .+++|++|
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~-~L~~L~Ls~N~l---~~l~~-~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPI---QSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCC---CEECG-GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCC-CCCEEEccCCcC---CCCCH-HHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 34556666555433 1 1244556 666666655432 11222 345555555555555555554443 24555555
Q ss_pred CEEeeCCCCcc
Q 044539 204 RYLNLNIPSLK 214 (217)
Q Consensus 204 ryL~L~~t~i~ 214 (217)
++|+|+++.++
T Consensus 151 ~~L~Ls~N~l~ 161 (635)
T 4g8a_A 151 KELNVAHNLIQ 161 (635)
T ss_dssp CEEECCSSCCC
T ss_pred CeeccccCccc
Confidence 55555555443
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.89 E-value=2.3e-05 Score=62.60 Aligned_cols=82 Identities=18% Similarity=0.106 Sum_probs=62.7
Q ss_pred CCceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCE
Q 044539 127 RENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRY 205 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lry 205 (217)
....+.+.+..+... ......++ +|+.|.+.++.-. .+ ..+..+++|+.|+|++|.+..+| .++.+.+|++
T Consensus 67 l~~L~~L~L~~n~l~~~~~l~~l~-~L~~L~l~~n~l~----~~--~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~ 138 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKPLANLK-NLGWLFLDENKVK----DL--SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLES 138 (291)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCC----CG--GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCE
T ss_pred CCCCCEEEccCCccCCCcccccCC-CCCEEECCCCcCC----CC--hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCE
Confidence 466788888776654 33467788 8899888776542 23 45888999999999999988874 6889999999
Q ss_pred EeeCCCCcccC
Q 044539 206 LNLNIPSLKSL 216 (217)
Q Consensus 206 L~L~~t~i~~L 216 (217)
|+++++.++.+
T Consensus 139 L~l~~n~l~~~ 149 (291)
T 1h6t_A 139 LYLGNNKITDI 149 (291)
T ss_dssp EECCSSCCCCC
T ss_pred EEccCCcCCcc
Confidence 99999887654
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.88 E-value=2.7e-05 Score=66.19 Aligned_cols=79 Identities=16% Similarity=0.099 Sum_probs=38.0
Q ss_pred CceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEE
Q 044539 128 ENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYL 206 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL 206 (217)
...+.+.+..+... .+....++ +|+.|.+.++... .++ . +.++++|++|+|++|.+..+|. ++++++|++|
T Consensus 68 ~~L~~L~Ls~n~l~~~~~~~~l~-~L~~L~l~~n~l~----~~~-~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITPLKNLT-KLVDILMNNNQIA----DIT-P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCC----CCG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred cCCCEEECCCCccCCchhhhccc-cCCEEECCCCccc----cCh-h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 34444444444332 22244445 5555555443321 121 2 5555556666665555555544 5555666666
Q ss_pred eeCCCCcc
Q 044539 207 NLNIPSLK 214 (217)
Q Consensus 207 ~L~~t~i~ 214 (217)
+++++.++
T Consensus 140 ~l~~n~l~ 147 (466)
T 1o6v_A 140 ELSSNTIS 147 (466)
T ss_dssp EEEEEEEC
T ss_pred ECCCCccC
Confidence 65555444
No 84
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.87 E-value=2.5e-05 Score=68.31 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=28.7
Q ss_pred hhhcCCCceeEEEeCCCCCc--cCCccccccccCCEEeeCCCCccc
Q 044539 172 KICKMFNFLRVLDLGSLVLI--RYPSEVENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~--~lP~~I~~L~~LryL~L~~t~i~~ 215 (217)
..++++++|++|+|+++.+. .+|..+++|++|++|+++++.++.
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 34566666666666666655 466667777777777777766654
No 85
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.86 E-value=1e-05 Score=64.73 Aligned_cols=85 Identities=20% Similarity=0.138 Sum_probs=43.5
Q ss_pred CCceeEEEEeCCCCc-ccc--ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccC
Q 044539 127 RENVKRFTAHGNLND-FEF--LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLL 203 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~~--~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~L 203 (217)
+...+++.+..+... .+. ...++ +|+.|.+.++.-. .....+ ..+..+++|++|+|+++.+..+|..++.+.+|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~-~~~~~~-~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLS-FKGCCS-QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCC-EEEEEE-HHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccC-cccCcc-cccccccccCEEECCCCccccChhhcCCCCCC
Confidence 456667776665543 221 34566 7777776654421 001112 33344555555555555555555555555555
Q ss_pred CEEeeCCCCcc
Q 044539 204 RYLNLNIPSLK 214 (217)
Q Consensus 204 ryL~L~~t~i~ 214 (217)
++|+++++.++
T Consensus 104 ~~L~l~~n~l~ 114 (306)
T 2z66_A 104 EHLDFQHSNLK 114 (306)
T ss_dssp CEEECTTSEEE
T ss_pred CEEECCCCccc
Confidence 55555555443
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.83 E-value=4.2e-05 Score=61.09 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=23.3
Q ss_pred hhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCccc
Q 044539 173 ICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 173 ~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~ 215 (217)
.+.++++|+.|+|++|.+..+|. ++.+.+|++|+++++.++.
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC
Confidence 34555555555555555555544 5555555555555555544
No 87
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.83 E-value=3.1e-05 Score=67.07 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=51.1
Q ss_pred ceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCcc--CCccccccccC
Q 044539 129 NVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIR--YPSEVENLFLL 203 (217)
Q Consensus 129 ~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~--lP~~I~~L~~L 203 (217)
+.|.+.+..+... . ..+..++ +|++|.+.++.-. ...+ ..++++++|++|+|+++.+.. +|+.+++|++|
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~---~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 77 HLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLA---SLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTSCCC---CSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred hCCEEeCcCCcCCccCHhhhcCcc-ccccccccccccc---cCCC-ccccccccccEEecCCCccceecChhhhcccCCC
Confidence 3445554444332 1 1234455 5555555444321 1222 357788888888888888764 68888888888
Q ss_pred CEEeeCCCCcccC
Q 044539 204 RYLNLNIPSLKSL 216 (217)
Q Consensus 204 ryL~L~~t~i~~L 216 (217)
++|+++++.++.+
T Consensus 152 ~~L~l~~n~l~~~ 164 (570)
T 2z63_A 152 EHLDLSSNKIQSI 164 (570)
T ss_dssp CEEECTTSCCCEE
T ss_pred CEEeCcCCcccee
Confidence 8888888877654
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.82 E-value=5.7e-05 Score=60.77 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=64.9
Q ss_pred CCceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCE
Q 044539 127 RENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRY 205 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lry 205 (217)
..+.+.+.+..+... .+....++ +|+.|.+.++.-. .+ ..+..+++|+.|+|+++.+..+|. ++.+.+|++
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~l~~n~l~----~~--~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 155 (308)
T 1h6u_A 84 LTKITELELSGNPLKNVSAIAGLQ-SIKTLDLTSTQIT----DV--TPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQY 155 (308)
T ss_dssp CCSCCEEECCSCCCSCCGGGTTCT-TCCEEECTTSCCC----CC--GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred CCCCCEEEccCCcCCCchhhcCCC-CCCEEECCCCCCC----Cc--hhhcCCCCCCEEECCCCccCcCcc-ccCCCCccE
Confidence 456788888877654 45567788 9999988876542 23 348899999999999999888876 899999999
Q ss_pred EeeCCCCcccC
Q 044539 206 LNLNIPSLKSL 216 (217)
Q Consensus 206 L~L~~t~i~~L 216 (217)
|++++|.++.+
T Consensus 156 L~l~~n~l~~~ 166 (308)
T 1h6u_A 156 LSIGNAQVSDL 166 (308)
T ss_dssp EECCSSCCCCC
T ss_pred EEccCCcCCCC
Confidence 99999988765
No 89
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.80 E-value=3.3e-05 Score=62.78 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=23.8
Q ss_pred hhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcc
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
..+.+++.|+.|+|++|.+..+|. ++.+.+|++|++++|.|+
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 445556666666666666555554 566666666666666554
No 90
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.78 E-value=2.3e-05 Score=62.72 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=20.0
Q ss_pred hhhcCCCceeEEEeCCCCCccCCc-cccccccCCEEeeCCCCcc
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPS-EVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~LryL~L~~t~i~ 214 (217)
..+..++.|+.|+|+++.+..+|. .++.+.+|++|+|+++.++
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 334444445555555544443332 3444455555555554443
No 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.78 E-value=3.5e-05 Score=67.69 Aligned_cols=45 Identities=24% Similarity=0.211 Sum_probs=27.5
Q ss_pred hhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccC
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L 216 (217)
..+..++.|++|+|++|.+..+|..++.+.+|++|+|++|.+..+
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc
Confidence 344455666666666666666666666666666666666665543
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.74 E-value=4.5e-05 Score=61.51 Aligned_cols=41 Identities=10% Similarity=-0.026 Sum_probs=22.6
Q ss_pred hcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcc
Q 044539 174 CKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 174 ~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
+..+++|+.|+|+++.+..+|..++.+.+|++|+++++.+.
T Consensus 210 ~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 44555555555555555555555555555555555555543
No 93
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.74 E-value=6.8e-05 Score=61.09 Aligned_cols=71 Identities=21% Similarity=0.057 Sum_probs=57.0
Q ss_pred cccccCCCCCeeEEEEeC-CCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-cccccccCCEEeeCCCCcccCC
Q 044539 142 FEFLDHFDSFLHSLLHLT-LGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 142 ~~~~~~~~~~LrsL~~~~-~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~LryL~L~~t~i~~L~ 217 (217)
++.+..++ +|+.|.+.+ +. .....+ ..|..+.+|+.|+|+++.+..+|. .+++|.+|++|+|++++++.+|
T Consensus 24 ip~l~~~~-~L~~L~l~~~n~---l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 24 LHHLPGAE-NLTELYIENQQH---LQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp TTTSCSCS-CCSEEECCSCSS---CCEECG-GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred cCCCCCCC-CeeEEEccCCCC---CCCcCh-hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 34455667 899999975 43 233444 779999999999999999987664 6799999999999999998775
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.71 E-value=0.00011 Score=57.74 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=46.9
Q ss_pred CceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEE
Q 044539 128 ENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYL 206 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL 206 (217)
...+.+.+..+... .+.... + +|+.|.+.++.-. .+ ..+.++++|++|+|+++.+..+| .++.+.+|++|
T Consensus 85 ~~L~~L~L~~N~l~~l~~~~~-~-~L~~L~L~~N~l~----~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L 155 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNGIPS-A-CLSRLFLDNNELR----DT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVL 155 (263)
T ss_dssp SSCCEEECCSSCCSCCTTCCC-S-SCCEEECCSSCCS----BS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEE
T ss_pred CCCCEEECCCCccCCcCcccc-C-cccEEEccCCccC----CC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEE
Confidence 34455555544433 222222 4 5666655554322 12 34677777888888877777775 57777778888
Q ss_pred eeCCCCccc
Q 044539 207 NLNIPSLKS 215 (217)
Q Consensus 207 ~L~~t~i~~ 215 (217)
+++++.++.
T Consensus 156 ~L~~N~i~~ 164 (263)
T 1xeu_A 156 DLHGNEITN 164 (263)
T ss_dssp ECTTSCCCB
T ss_pred ECCCCcCcc
Confidence 877777654
No 95
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.69 E-value=5.8e-05 Score=66.00 Aligned_cols=83 Identities=12% Similarity=-0.144 Sum_probs=48.9
Q ss_pred CceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-CccccccccC
Q 044539 128 ENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~L 203 (217)
.+.+.+.+..+... ...+..++ +|++|.+.++.- ....+ ..+.++++|++|+|+++.+..+ |..++++.+|
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l---~~~~~-~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQH-RLDTLVLTANPL---IFMAE-TALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCC---SEECT-TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred ccceEEECCCCccceeChhhccCcc-ccCeeeCCCCcc---cccCh-hhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 45666666665443 22345666 777777765542 12333 5566666666666666666654 4556666666
Q ss_pred CEEeeCCCCccc
Q 044539 204 RYLNLNIPSLKS 215 (217)
Q Consensus 204 ryL~L~~t~i~~ 215 (217)
++|+++++.++.
T Consensus 132 ~~L~L~~n~l~~ 143 (606)
T 3t6q_A 132 ESLYLGSNHISS 143 (606)
T ss_dssp CEEECCSSCCCC
T ss_pred cEEECCCCcccc
Confidence 666666666554
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.69 E-value=8e-05 Score=65.66 Aligned_cols=79 Identities=18% Similarity=0.110 Sum_probs=37.3
Q ss_pred ceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEe
Q 044539 129 NVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLN 207 (217)
Q Consensus 129 ~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~ 207 (217)
..++|.+..+... ++....++ +|+.|.+.++... .+ ..+..+++|+.|+|++|.+..+|. ++.|.+|++|+
T Consensus 110 ~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N~l~----~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~ 181 (605)
T 1m9s_A 110 KLKSLSLEHNGISDINGLVHLP-QLESLYLGNNKIT----DI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 181 (605)
T ss_dssp TCCEEECTTSCCCCCGGGGGCT-TCSEEECCSSCCC----CC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred CCCEEEecCCCCCCCccccCCC-ccCEEECCCCccC----Cc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEE
Confidence 3444444443332 22344445 5555555443321 11 334555555555555555554444 55555555555
Q ss_pred eCCCCccc
Q 044539 208 LNIPSLKS 215 (217)
Q Consensus 208 L~~t~i~~ 215 (217)
|++|.|+.
T Consensus 182 Ls~N~i~~ 189 (605)
T 1m9s_A 182 LSKNHISD 189 (605)
T ss_dssp CCSSCCCB
T ss_pred CcCCCCCC
Confidence 55555443
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.68 E-value=9.6e-05 Score=58.10 Aligned_cols=81 Identities=21% Similarity=0.075 Sum_probs=58.5
Q ss_pred CCceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCE
Q 044539 127 RENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRY 205 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lry 205 (217)
....+.+.+..+... .+....++ +|+.|.+.++.-. .++ . +.. ..|+.|+|++|.+..+| .++.+.+|++
T Consensus 62 l~~L~~L~L~~N~i~~~~~l~~l~-~L~~L~L~~N~l~----~l~-~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~ 132 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSPLKDLT-KLEELSVNRNRLK----NLN-G-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEI 132 (263)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCS-SCCEEECCSSCCS----CCT-T-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCE
T ss_pred CCCCCEEECCCCccCCChhhccCC-CCCEEECCCCccC----CcC-c-ccc-CcccEEEccCCccCCCh-hhcCcccccE
Confidence 456777777776554 33366778 8888888776542 122 2 223 88899999998888876 5889999999
Q ss_pred EeeCCCCcccC
Q 044539 206 LNLNIPSLKSL 216 (217)
Q Consensus 206 L~L~~t~i~~L 216 (217)
|+|++++++.+
T Consensus 133 L~Ls~N~i~~~ 143 (263)
T 1xeu_A 133 LSIRNNKLKSI 143 (263)
T ss_dssp EECTTSCCCBC
T ss_pred EECCCCcCCCC
Confidence 99999988765
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.68 E-value=6.9e-05 Score=57.79 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=23.8
Q ss_pred hcCCCcee---EEEeCCC-CCccCCcc-ccccccCC-EEeeCCCCcccC
Q 044539 174 CKMFNFLR---VLDLGSL-VLIRYPSE-VENLFLLR-YLNLNIPSLKSL 216 (217)
Q Consensus 174 ~~~l~~Lr---vLdL~~~-~i~~lP~~-I~~L~~Lr-yL~L~~t~i~~L 216 (217)
+..++.|+ +|+++++ .+..+|.. ++.+.+|+ +|++++++++.+
T Consensus 123 ~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 44444444 6666666 55555532 55666666 666666655543
No 99
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.67 E-value=6.7e-05 Score=61.32 Aligned_cols=84 Identities=13% Similarity=-0.017 Sum_probs=59.7
Q ss_pred CCceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc--cccccc
Q 044539 127 RENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS--EVENLF 201 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~--~I~~L~ 201 (217)
..+.+.+.+..+... . .....++ +|++|.+.++.-. ...+ ..+.++++|++|+|+++.+..+|. .++.++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~---~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLS---NLSS-SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCS---SCCH-HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCC---cCCH-hHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 456788888776554 2 2356678 8889888776532 2333 557888888888888888888886 678888
Q ss_pred cCCEEeeCCCC-ccc
Q 044539 202 LLRYLNLNIPS-LKS 215 (217)
Q Consensus 202 ~LryL~L~~t~-i~~ 215 (217)
+|++|++++++ ++.
T Consensus 150 ~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 150 KLQILRVGNMDTFTK 164 (353)
T ss_dssp TCCEEEEEESSSCCE
T ss_pred CCcEEECCCCccccc
Confidence 88888888773 443
No 100
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.64 E-value=9.3e-05 Score=62.37 Aligned_cols=67 Identities=18% Similarity=-0.033 Sum_probs=35.4
Q ss_pred ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-CccccccccCCEEeeCCCCcccC
Q 044539 145 LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 145 ~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~LryL~L~~t~i~~L 216 (217)
...++ +|+.|.+.++.- ....+ ..|..+++|+.|+|+++.+..+ |..++.+.+|++|+|++++++.+
T Consensus 203 ~~~l~-~L~~L~Ls~N~l---~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 203 LTPLI-KLDELDLSGNHL---SAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp CTTCS-SCCEEECTTSCC---CEECT-TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred cCCCc-ccCEEECCCCcc---CccCh-hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 33444 555555544321 12223 4555666666666666665533 34555666666666666665544
No 101
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.64 E-value=5.8e-05 Score=66.84 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=25.5
Q ss_pred hhhcCCCceeEEEeCCCCCcc------------------CCcccc--ccccCCEEeeCCCC
Q 044539 172 KICKMFNFLRVLDLGSLVLIR------------------YPSEVE--NLFLLRYLNLNIPS 212 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~------------------lP~~I~--~L~~LryL~L~~t~ 212 (217)
..++++++|++|+|+++.+.. +|++++ +|.+|++|+|++|.
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 456666666666666666555 666666 66666666666654
No 102
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.64 E-value=6.4e-05 Score=63.85 Aligned_cols=81 Identities=12% Similarity=0.038 Sum_probs=58.2
Q ss_pred CceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEE
Q 044539 128 ENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYL 206 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL 206 (217)
...|.+.+...... ++....++ +||+|.+.++... .++ . +.++++|++|+|+++.+..+|. ++++.+|++|
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~-~L~~L~Ls~n~l~----~~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLN-NLTQINFSNNQLT----DIT-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCT-TCCEEECCSSCCC----CCG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCCCccCcchhhhc-CCCEEECCCCccC----Cch-h-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 45677777665443 44556677 8888888766532 233 3 7788888888888888887776 8888888888
Q ss_pred eeCCCCcccC
Q 044539 207 NLNIPSLKSL 216 (217)
Q Consensus 207 ~L~~t~i~~L 216 (217)
++++|.++.+
T Consensus 118 ~L~~n~l~~~ 127 (466)
T 1o6v_A 118 TLFNNQITDI 127 (466)
T ss_dssp ECCSSCCCCC
T ss_pred ECCCCCCCCC
Confidence 8888877654
No 103
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.63 E-value=7.7e-05 Score=63.38 Aligned_cols=63 Identities=24% Similarity=0.147 Sum_probs=53.2
Q ss_pred CeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-CccccccccCCEEeeCCCCcccCC
Q 044539 151 FLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 151 ~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
.++.|.+.++.- ....+ ..|.++++|++|+|+++.+..+ |..+++|.+|++|+|+++.++.+|
T Consensus 33 ~l~~L~L~~n~l---~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 33 ETRLLDLGKNRI---KTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp TCSEEECCSSCC---CEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCcEEECCCCcc---ceECH-hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC
Confidence 899999887653 23444 7899999999999999998865 789999999999999999988764
No 104
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.62 E-value=0.00011 Score=62.07 Aligned_cols=67 Identities=19% Similarity=-0.029 Sum_probs=37.7
Q ss_pred ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccC-CccccccccCCEEeeCCCCcccC
Q 044539 145 LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRY-PSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 145 ~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~l-P~~I~~L~~LryL~L~~t~i~~L 216 (217)
...++ +|+.|.+.++.. ....+ ..+.+++.|+.|+|+++.+..+ |..++.+.+|++|+|++++++.+
T Consensus 214 ~~~l~-~L~~L~Ls~N~l---~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 214 LTPLV-GLEELEMSGNHF---PEIRP-GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp CTTCT-TCCEEECTTSCC---SEECG-GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ccccc-cccEEECcCCcC---cccCc-ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 33444 555555544332 12333 5566666666666666665533 45566667777777776666554
No 105
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.60 E-value=0.00012 Score=62.18 Aligned_cols=79 Identities=19% Similarity=0.079 Sum_probs=49.3
Q ss_pred CceeEEEEeCCCCccccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEe
Q 044539 128 ENVKRFTAHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLN 207 (217)
Q Consensus 128 ~~~r~ls~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~ 207 (217)
...+++.+..+.........++ +|+.|.+.++.-. . ..++++++|++|+|+++.+..+| ++.+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~~~~~l~-~L~~L~Ls~N~l~----~---~~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLDLSQNT-NLTYLACDSNKLT----N---LDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTCT-TCSEEECCSSCCS----C---CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCeEccccCC-CCCEEECcCCCCc----e---eecCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 4556666665554422355566 6666666654432 1 12566777777777777777665 77777777777
Q ss_pred eCCCCcccC
Q 044539 208 LNIPSLKSL 216 (217)
Q Consensus 208 L~~t~i~~L 216 (217)
++++.++.+
T Consensus 134 l~~N~l~~l 142 (457)
T 3bz5_A 134 CARNTLTEI 142 (457)
T ss_dssp CTTSCCSCC
T ss_pred CCCCcccee
Confidence 777776654
No 106
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.59 E-value=9.4e-05 Score=65.64 Aligned_cols=66 Identities=17% Similarity=-0.019 Sum_probs=34.4
Q ss_pred ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCcc-CCccccccccCCEEeeCCCCccc
Q 044539 145 LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIR-YPSEVENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 145 ~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~-lP~~I~~L~~LryL~L~~t~i~~ 215 (217)
+..++ +|++|.+.++.. ....+ ..+.++++|++|+|+++.+.. .|..++++.+|++|+++++.++.
T Consensus 93 ~~~l~-~L~~L~L~~n~l---~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 93 FAFCT-NLTELHLMSNSI---QKIKN-NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp TTTCT-TCSEEECCSSCC---CCCCS-CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred hccCC-CCCEEECCCCcc---CccCh-hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 33455 555555544432 12222 445566666666666665443 33455566666666666655543
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.58 E-value=0.00012 Score=59.09 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=33.7
Q ss_pred CCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccCC
Q 044539 176 MFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 176 ~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
.++.|+.|+|+++.+..+|..++.+.+|++|+|+++.++.+|
T Consensus 189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh
Confidence 477788888888888888888888888888888888877654
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.57 E-value=0.00015 Score=63.91 Aligned_cols=81 Identities=19% Similarity=0.125 Sum_probs=54.4
Q ss_pred CceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEE
Q 044539 128 ENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYL 206 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL 206 (217)
...++|.+..+... ++....++ +|+.|.+.++... .+ ..+..+++|+.|+|++|.+..+ +.++.|.+|++|
T Consensus 87 ~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N~l~----~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L 158 (605)
T 1m9s_A 87 KNLGWLFLDENKIKDLSSLKDLK-KLKSLSLEHNGIS----DI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL 158 (605)
T ss_dssp TTCCEEECCSSCCCCCTTSTTCT-TCCEEECTTSCCC----CC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEE
T ss_pred CCCCEEECcCCCCCCChhhccCC-CCCEEEecCCCCC----CC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEE
Confidence 45566666655443 34455666 7777776655432 12 4567778888888888887776 568888888888
Q ss_pred eeCCCCcccC
Q 044539 207 NLNIPSLKSL 216 (217)
Q Consensus 207 ~L~~t~i~~L 216 (217)
+|++|.+..+
T Consensus 159 ~Ls~N~l~~~ 168 (605)
T 1m9s_A 159 SLEDNQISDI 168 (605)
T ss_dssp ECCSSCCCCC
T ss_pred ECcCCcCCCc
Confidence 8888877654
No 109
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.56 E-value=7.8e-05 Score=65.99 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=59.8
Q ss_pred CCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCc-ccchhhhcCC------CceeEEEeCCCCCccCCc-
Q 044539 127 RENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDP-NYCEKICKMF------NFLRVLDLGSLVLIRYPS- 195 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~-~l~~~~~~~l------~~LrvLdL~~~~i~~lP~- 195 (217)
..+.+.+.+..+... .....+++ +|++|.+.++.. ... .+| ..+.++ ++|++|+|+++.+..+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~--l~~~~lp-~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACNRG--ISGEQLK-DDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCS-SCCEEECTTCTT--SCHHHHH-HHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCC-CCCEEECcCCCC--Cccccch-HHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 456778888876533 33466788 888888877651 111 244 455554 788888888888778887
Q ss_pred -cccccccCCEEeeCCCCcc-cCC
Q 044539 196 -EVENLFLLRYLNLNIPSLK-SLL 217 (217)
Q Consensus 196 -~I~~L~~LryL~L~~t~i~-~L~ 217 (217)
.++++.+|++|+++++.++ .+|
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC
T ss_pred hhhccCCCCCEEeCcCCcCccchh
Confidence 7888888888888887776 543
No 110
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.54 E-value=0.00011 Score=63.42 Aligned_cols=81 Identities=14% Similarity=-0.005 Sum_probs=55.5
Q ss_pred CCceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCc--cCCccccccc
Q 044539 127 RENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLI--RYPSEVENLF 201 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~--~lP~~I~~L~ 201 (217)
..+.|++.+..+... . ..+..++ +|++|.+.++.- ....+ ..++++++|++|+|+++.+. ..|..++++.
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l---~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSDNHL---SSLSS-SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCC---CSCCH-HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCcccEEECCCCCcCccChhhccccc-cCCEEECCCCcc---CccCH-HHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 456777777766554 1 2356677 888888776643 22333 55778888888888888776 3466778888
Q ss_pred cCCEEeeCCCC
Q 044539 202 LLRYLNLNIPS 212 (217)
Q Consensus 202 ~LryL~L~~t~ 212 (217)
+|++|+++++.
T Consensus 124 ~L~~L~L~~n~ 134 (549)
T 2z81_A 124 NLQTLRIGNVE 134 (549)
T ss_dssp TCCEEEEEESS
T ss_pred CccEEECCCCc
Confidence 88888887765
No 111
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=8.7e-05 Score=68.10 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCC-CCCCCcccchhhhcCC-------CceeEEEeCCCCCccCCc
Q 044539 127 RENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLG-SHYLDPNYCEKICKMF-------NFLRVLDLGSLVLIRYPS 195 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~-~~~~~~~l~~~~~~~l-------~~LrvLdL~~~~i~~lP~ 195 (217)
....+.|.+..+... +..+..++ +|+.|.+.++. .. ...+| ..+.++ ++|++|+|++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~ls--g~~iP-~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGIS--AAQLK-ADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSC--HHHHH-HHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred CCCCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcc--cccch-HHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 456788888876532 33466788 88888887764 21 00233 333333 377777777777667776
Q ss_pred --cccccccCCEEeeCCCCcccCC
Q 044539 196 --EVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 196 --~I~~L~~LryL~L~~t~i~~L~ 217 (217)
.+++|.+|++|+|+++.++.+|
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~~lp 589 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVRHLE 589 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCCBCC
T ss_pred hhhhhcCCCCCEEECCCCCcccch
Confidence 7777777777777777666553
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.51 E-value=0.00014 Score=62.42 Aligned_cols=81 Identities=23% Similarity=0.096 Sum_probs=39.4
Q ss_pred CceeEEEEeCCCCc---ccccc-CCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccC
Q 044539 128 ENVKRFTAHGNLND---FEFLD-HFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~---~~~~~-~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~L 203 (217)
...+.|.+..+... +.... .++ .|++|.+.++.-. .+ .....++.|+.|+|++|.+..+|+.++.+.+|
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~l~----~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L 216 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIY----DV--KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCC----EE--ECCCCCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCccc----cc--cccccCCCCCEEECCCCCCCCCCHhHcCCCCc
Confidence 45666666665543 11222 456 6666666554421 11 11223445555555555555555445555555
Q ss_pred CEEeeCCCCccc
Q 044539 204 RYLNLNIPSLKS 215 (217)
Q Consensus 204 ryL~L~~t~i~~ 215 (217)
++|+|+++.++.
T Consensus 217 ~~L~Ls~N~l~~ 228 (487)
T 3oja_A 217 TWISLRNNKLVL 228 (487)
T ss_dssp SEEECTTSCCCE
T ss_pred cEEEecCCcCcc
Confidence 555555554443
No 113
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.50 E-value=0.00015 Score=65.57 Aligned_cols=82 Identities=18% Similarity=0.114 Sum_probs=59.4
Q ss_pred CceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCc-cCCccccccccC
Q 044539 128 ENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLI-RYPSEVENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~-~lP~~I~~L~~L 203 (217)
...+.+.+..+... ...+..++ .|++|.+.++.- ...+| ..++.++.|++|||++|.+. .+|+.++.|..|
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l---~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHNDI---SGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCT-TCCEEECCSSCC---CSCCC-GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred ccccEEECcCCcccccCCHHHhccc-cCCEEeCcCCcc---CCCCC-hHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 34556666655543 23466677 888888877653 23455 78888888888888888876 788888888888
Q ss_pred CEEeeCCCCcc
Q 044539 204 RYLNLNIPSLK 214 (217)
Q Consensus 204 ryL~L~~t~i~ 214 (217)
++|+|+++++.
T Consensus 707 ~~L~ls~N~l~ 717 (768)
T 3rgz_A 707 TEIDLSNNNLS 717 (768)
T ss_dssp SEEECCSSEEE
T ss_pred CEEECcCCccc
Confidence 88888887654
No 114
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.50 E-value=0.00023 Score=64.27 Aligned_cols=64 Identities=17% Similarity=0.010 Sum_probs=33.4
Q ss_pred cCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCc-cCCccccccccCCEEeeCCCCcc
Q 044539 146 DHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLI-RYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 146 ~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~-~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
..++ .|++|.+.++.. ...+| ..+.+++.|++|+|++|.+. .+|..++.+.+|++|+|++|.+.
T Consensus 463 ~~l~-~L~~L~L~~N~l---~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 463 MYVK-TLETLILDFNDL---TGEIP-SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp GGCT-TCCEEECCSSCC---CSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred cCCC-CceEEEecCCcc---cCcCC-HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 3445 555555544432 11233 45555555666666655544 55555555555555555555543
No 115
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.49 E-value=7e-05 Score=60.24 Aligned_cols=81 Identities=14% Similarity=-0.005 Sum_probs=62.8
Q ss_pred CCceeEEEEeCCCCc--ccc-c--cCCCCCeeEEEEeCCCCCCCCcccchhhhcCC-----CceeEEEeCCCCCccCC-c
Q 044539 127 RENVKRFTAHGNLND--FEF-L--DHFDSFLHSLLHLTLGSHYLDPNYCEKICKMF-----NFLRVLDLGSLVLIRYP-S 195 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~--~~~-~--~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l-----~~LrvLdL~~~~i~~lP-~ 195 (217)
..+.+++.+..+... .+. . ..++ +|+.|.+.++.-. .. + ..+..+ +.|++|+|+++.+..+| +
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~---~~-~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGP-DLNILNLRNVSWA---TR-D-AWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSC-CCSEEEEESCBCS---SS-S-SHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCC-CccEEEccCCCCc---ch-h-HHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 467888888877654 222 2 6788 9999999887643 12 4 555555 89999999999988777 8
Q ss_pred cccccccCCEEeeCCCCc
Q 044539 196 EVENLFLLRYLNLNIPSL 213 (217)
Q Consensus 196 ~I~~L~~LryL~L~~t~i 213 (217)
.++.+++|++|+|+++.+
T Consensus 168 ~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp TCCCCSSCCEEECCSCTT
T ss_pred HhccCCCCCEEECCCCCc
Confidence 899999999999999874
No 116
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.49 E-value=0.00016 Score=61.92 Aligned_cols=65 Identities=12% Similarity=-0.068 Sum_probs=34.2
Q ss_pred cCCCCCeeEEEEeCCCCCCCCcccchhhh-cCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccC
Q 044539 146 DHFDSFLHSLLHLTLGSHYLDPNYCEKIC-KMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 146 ~~~~~~LrsL~~~~~~~~~~~~~l~~~~~-~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L 216 (217)
..++ .|++|.+.++... ...+ ..+ ..++.|++|+|++|.+..+|. ...+.+|++|+|+++.++.+
T Consensus 141 ~~l~-~L~~L~Ls~N~l~---~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 141 GCRS-RVQYLDLKLNEID---TVNF-AELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp GGGS-SEEEEECTTSCCC---EEEG-GGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEE
T ss_pred cCCC-CCCEEECCCCCCC---CcCh-HHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCC
Confidence 3445 5555555544321 1222 222 356666666666666655543 33466666666666666544
No 117
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.48 E-value=0.0002 Score=65.40 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=25.7
Q ss_pred hcCCCceeEEEeCCCCCccC--CccccccccCCEEeeCCCCcc
Q 044539 174 CKMFNFLRVLDLGSLVLIRY--PSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 174 ~~~l~~LrvLdL~~~~i~~l--P~~I~~L~~LryL~L~~t~i~ 214 (217)
+.++++|+.|+|++|.+..+ |+.+++|++|++|+|+++.++
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 56666666666666665543 245666666666666666554
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.47 E-value=2.1e-05 Score=59.10 Aligned_cols=66 Identities=18% Similarity=0.093 Sum_probs=52.0
Q ss_pred cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccC
Q 044539 144 FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 144 ~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L 216 (217)
....++ +|+.|.+.++.-. .+ +.+.++++|+.|+|++|.+..+|..++.+++|++|+++++.++.+
T Consensus 43 ~~~~l~-~L~~L~ls~n~l~----~l--~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 43 TLSTLK-ACKHLALSTNNIE----KI--SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp HHHHTT-TCSEEECSEEEES----CC--CCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH
T ss_pred HHhcCC-CCCEEECCCCCCc----cc--cccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC
Confidence 355678 8999988765432 13 356778899999999999889998888889999999998887654
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.45 E-value=0.00027 Score=60.05 Aligned_cols=74 Identities=15% Similarity=-0.011 Sum_probs=41.5
Q ss_pred CceeEEEEeCCCCccccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEe
Q 044539 128 ENVKRFTAHGNLNDFEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLN 207 (217)
Q Consensus 128 ~~~r~ls~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~ 207 (217)
.+.+.+.+..+.........++ +|+.|.+.++.-. .+ .++.+++|++|+++++.+..+| ++.+.+|++|+
T Consensus 85 ~~L~~L~Ls~N~l~~~~~~~l~-~L~~L~L~~N~l~----~l---~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 85 TNLTYLACDSNKLTNLDVTPLT-KLTYLNCDTNKLT----KL---DVSQNPLLTYLNCARNTLTEID--VSHNTQLTELD 154 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTCT-TCCEEECCSSCCS----CC---CCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE
T ss_pred CCCCEEECcCCCCceeecCCCC-cCCEEECCCCcCC----ee---cCCCCCcCCEEECCCCccceec--cccCCcCCEEE
Confidence 4455565555544322345556 6666666554322 11 1556666666666666666553 66666666666
Q ss_pred eCCC
Q 044539 208 LNIP 211 (217)
Q Consensus 208 L~~t 211 (217)
++++
T Consensus 155 l~~n 158 (457)
T 3bz5_A 155 CHLN 158 (457)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6665
No 120
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.45 E-value=0.00032 Score=56.26 Aligned_cols=82 Identities=13% Similarity=-0.021 Sum_probs=47.0
Q ss_pred ceeEEEEeCCCCcc-------ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCcc---CC--cc
Q 044539 129 NVKRFTAHGNLNDF-------EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIR---YP--SE 196 (217)
Q Consensus 129 ~~r~ls~~~~~~~~-------~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~---lP--~~ 196 (217)
+.+.+.+..+.... .....++ +|+.|.+.++.- ....+ ..++.+++|++|+|++|.+.. +| ..
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l---~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKP-GLKVLSIAQAHS---PAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCS-CCCEEEEECCSS---CCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred CCCEEEeecccccchhhhhHHHHhhhcc-CCCEEEeeCCCc---chhhH-HHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 44555555554331 1123466 777777665543 22333 566677777777777776432 32 23
Q ss_pred ccccccCCEEeeCCCCccc
Q 044539 197 VENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 197 I~~L~~LryL~L~~t~i~~ 215 (217)
++.+++|++|+|++|+++.
T Consensus 193 ~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp TTSSCCCCSCBCCSSCCCC
T ss_pred hhcCCCCCEEECCCCCCCc
Confidence 3577777777777777654
No 121
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.45 E-value=0.0002 Score=57.56 Aligned_cols=84 Identities=17% Similarity=0.132 Sum_probs=64.2
Q ss_pred CCceeEEEEeCCCCc-cc-cccCC-----CCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCcc---CCcc
Q 044539 127 RENVKRFTAHGNLND-FE-FLDHF-----DSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIR---YPSE 196 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-~~-~~~~~-----~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~---lP~~ 196 (217)
..+.+++.+..+... .+ ....+ + +|+.|.+.++.- ....+ ..+.++++|++|+|+++.+.. +|..
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~-~L~~L~L~~N~l---~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKP-GLKVLSIAQAHS---LNFSC-EQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCT-TCCEEEEESCSC---CCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcC-CCcEEEeeCCCC---ccchH-HHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 467889999887654 21 12223 7 999999988764 23455 778999999999999998642 5666
Q ss_pred c--cccccCCEEeeCCCCccc
Q 044539 197 V--ENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 197 I--~~L~~LryL~L~~t~i~~ 215 (217)
+ +.+.+|++|+|+++.++.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~ 215 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMET 215 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCC
T ss_pred HHhccCCCCCEEECCCCcCcc
Confidence 6 899999999999999874
No 122
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.36 E-value=4.2e-05 Score=61.43 Aligned_cols=44 Identities=20% Similarity=0.082 Sum_probs=33.1
Q ss_pred hcCCCceeEEEeCCCCCccC-Ccccccc---ccCCEEeeCCCCcccCC
Q 044539 174 CKMFNFLRVLDLGSLVLIRY-PSEVENL---FLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 174 ~~~l~~LrvLdL~~~~i~~l-P~~I~~L---~~LryL~L~~t~i~~L~ 217 (217)
+..++.|++|||+++.+... |+.++.+ .+|++|+|++++++.+|
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence 46677888888888887755 7777776 58888888888777664
No 123
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=0.0004 Score=63.75 Aligned_cols=83 Identities=8% Similarity=0.012 Sum_probs=50.7
Q ss_pred ceeEEEEeCCCCc-ccc-cc--CCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCC------CC-CccCCccc
Q 044539 129 NVKRFTAHGNLND-FEF-LD--HFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGS------LV-LIRYPSEV 197 (217)
Q Consensus 129 ~~r~ls~~~~~~~-~~~-~~--~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~------~~-i~~lP~~I 197 (217)
..+.|.+..+... ++. .. .++ +|+.|.+.++.-. . +| ..+..+++|+.|+|++ +. ...+|..+
T Consensus 729 ~L~~L~Ls~N~L~~lp~~l~~~~l~-~L~~L~Ls~N~L~---~-lp-~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSDDFRATTLP-YLSNMDVSYNCFS---S-FP-TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp GCCEEECCSSCCCCCCGGGSTTTCT-TCCEEECCSSCCS---S-CC-CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred CccEEECCCCCCccchHHhhhccCC-CcCEEEeCCCCCC---c-cc-hhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 5666666655443 222 22 566 7777777665432 1 34 5566777777777755 33 33667777
Q ss_pred cccccCCEEeeCCCCcccCC
Q 044539 198 ENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 198 ~~L~~LryL~L~~t~i~~L~ 217 (217)
++|++|++|+|++|.+..+|
T Consensus 803 ~~L~~L~~L~Ls~N~L~~Ip 822 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDIRKVD 822 (876)
T ss_dssp GGCSSCCEEECCSSCCCBCC
T ss_pred hcCCCCCEEECCCCCCCccC
Confidence 77777777777777776554
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.34 E-value=2.8e-06 Score=63.93 Aligned_cols=80 Identities=21% Similarity=0.079 Sum_probs=46.2
Q ss_pred CceeEEEEeCCCCc-ccc-ccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc--cccccccC
Q 044539 128 ENVKRFTAHGNLND-FEF-LDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS--EVENLFLL 203 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~~-~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~--~I~~L~~L 203 (217)
...+.+.+..+... ++. ...++ +|+.|.+.++.-. .+ ..+..+++|++|+|+++.+..+|. .++.+.+|
T Consensus 70 ~~L~~L~l~~n~l~~l~~~~~~~~-~L~~L~L~~N~l~----~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L 142 (198)
T 1ds9_A 70 ENLRILSLGRNLIKKIENLDAVAD-TLEELWISYNQIA----SL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142 (198)
T ss_dssp TTCCEEEEEEEEECSCSSHHHHHH-HCSEEEEEEEECC----CH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC
T ss_pred CCCCEEECCCCCcccccchhhcCC-cCCEEECcCCcCC----cC--CccccCCCCCEEECCCCcCCchhHHHHHhcCCCC
Confidence 34455555544332 221 22235 6666666654321 12 346667777777777777766554 67777777
Q ss_pred CEEeeCCCCcc
Q 044539 204 RYLNLNIPSLK 214 (217)
Q Consensus 204 ryL~L~~t~i~ 214 (217)
++|+++++.+.
T Consensus 143 ~~L~l~~N~l~ 153 (198)
T 1ds9_A 143 EDLLLAGNPLY 153 (198)
T ss_dssp SEEEECSCHHH
T ss_pred CEEEecCCccc
Confidence 77777777653
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.32 E-value=0.00057 Score=60.43 Aligned_cols=77 Identities=18% Similarity=-0.069 Sum_probs=52.2
Q ss_pred CCCceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCC
Q 044539 126 LRENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLR 204 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lr 204 (217)
.+.+.+.|.+..+... ++. .++ +|++|.+.++.-. .+| . .+++|++|+|++|.+..+|. .+.+|+
T Consensus 59 l~~~L~~L~L~~N~l~~lp~--~l~-~L~~L~Ls~N~l~----~lp-~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~ 124 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPA--LPP-ELRTLEVSGNQLT----SLP-V---LPPGLLELSIFSNPLTHLPA---LPSGLC 124 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCC--CCT-TCCEEEECSCCCS----CCC-C---CCTTCCEEEECSCCCCCCCC---CCTTCC
T ss_pred hCCCCcEEEecCCCCCCCCC--cCC-CCCEEEcCCCcCC----cCC-C---CCCCCCEEECcCCcCCCCCC---CCCCcC
Confidence 3467888888877655 333 567 9999998876542 233 3 67888999999888887776 445555
Q ss_pred EEeeCCCCcccC
Q 044539 205 YLNLNIPSLKSL 216 (217)
Q Consensus 205 yL~L~~t~i~~L 216 (217)
+|++++++++.+
T Consensus 125 ~L~L~~N~l~~l 136 (622)
T 3g06_A 125 KLWIFGNQLTSL 136 (622)
T ss_dssp EEECCSSCCSCC
T ss_pred EEECCCCCCCcC
Confidence 555555555444
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.25 E-value=0.0007 Score=57.47 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=45.8
Q ss_pred CceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEE
Q 044539 128 ENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYL 206 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL 206 (217)
...+.+.+..+... ++....++ +|+.|.+.++.-. .+| . ....|++|+|+++.+..+| +++.+.+|++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~-~L~~L~l~~N~l~----~lp-~---~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSS-FLKIIDVDNNSLK----KLP-D---LPPSLEFIAAGNNQLEELP-ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCT-TCCEEECCSSCCS----CCC-C---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred CCCCEEECcCCCCCCCcccCCCC-CCCEEECCCCcCc----ccC-C---CcccccEEECcCCcCCcCc-cccCCCCCCEE
Confidence 34555555554432 33455556 6666666554321 122 1 1246677777777766666 57777777777
Q ss_pred eeCCCCcccC
Q 044539 207 NLNIPSLKSL 216 (217)
Q Consensus 207 ~L~~t~i~~L 216 (217)
+++++.++.+
T Consensus 201 ~l~~N~l~~l 210 (454)
T 1jl5_A 201 YADNNSLKKL 210 (454)
T ss_dssp ECCSSCCSSC
T ss_pred ECCCCcCCcC
Confidence 7777776654
No 127
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.21 E-value=0.00034 Score=55.31 Aligned_cols=65 Identities=22% Similarity=0.075 Sum_probs=49.9
Q ss_pred cCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccc--cCCEEeeCCCCcc
Q 044539 146 DHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLF--LLRYLNLNIPSLK 214 (217)
Q Consensus 146 ~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~--~LryL~L~~t~i~ 214 (217)
.+++ +|++|.+.++.-. ....++ ..+.++++|+.|+|+++.+..+ ++++.|. +|++|+|+++.+.
T Consensus 167 ~~l~-~L~~L~Ls~N~l~-~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIP-ELLSLNLSNNRLY-RLDDMS-SIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCT-TCCEEECTTSCCC-CCGGGT-THHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCC-CCCEEECCCCCCC-CCccch-hHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 3578 9999998887653 222344 5667899999999999998876 4567776 9999999998875
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.16 E-value=0.00025 Score=58.54 Aligned_cols=39 Identities=15% Similarity=-0.021 Sum_probs=18.9
Q ss_pred cCCCceeEEEeCCCCCcc-----CCccccccccCCEEeeCCCCc
Q 044539 175 KMFNFLRVLDLGSLVLIR-----YPSEVENLFLLRYLNLNIPSL 213 (217)
Q Consensus 175 ~~l~~LrvLdL~~~~i~~-----lP~~I~~L~~LryL~L~~t~i 213 (217)
.++++|++|+|+++.+.. +|..++.+++|++|+|++|.+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 444555555555544432 444444555555555554444
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.13 E-value=0.00092 Score=58.50 Aligned_cols=74 Identities=18% Similarity=0.084 Sum_probs=35.3
Q ss_pred ceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCCEEe
Q 044539 129 NVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLN 207 (217)
Q Consensus 129 ~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~ 207 (217)
+.+.|.+..+... ++. .++ +|+.|.+.++.-. .+| . .+++|++|+|++|.+..+|. ++ .+|++|+
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~-~L~~L~Ls~N~l~----~lp-~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPA-LLEYINADNNQLT----MLP-E---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALD 186 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCT-TCCEEECCSSCCS----CCC-C---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEE
T ss_pred CCCEEECCCCcCCCCCC--cCc-cccEEeCCCCccC----cCC-C---cCCCcCEEECCCCCCCCcch-hh--CCCCEEE
Confidence 4444444444332 222 344 5555555544321 122 2 34455555555555555555 44 5555555
Q ss_pred eCCCCcccC
Q 044539 208 LNIPSLKSL 216 (217)
Q Consensus 208 L~~t~i~~L 216 (217)
|++|+|+.+
T Consensus 187 Ls~N~L~~l 195 (571)
T 3cvr_A 187 VSTNLLESL 195 (571)
T ss_dssp CCSSCCSSC
T ss_pred CcCCCCCch
Confidence 555555544
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.12 E-value=0.00014 Score=58.78 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=61.5
Q ss_pred CCceeEEEEeCCCCc---c-ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCC-CCc--cCCccccc
Q 044539 127 RENVKRFTAHGNLND---F-EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSL-VLI--RYPSEVEN 199 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~---~-~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~-~i~--~lP~~I~~ 199 (217)
..+.+++.+..+... . .....++ +|++|.+.++.. ....+ ..+.++++|++|+|++| .+. .+|..++.
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l---~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRL---SDPIV-NTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBC---CHHHH-HHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCccc---CHHHH-HHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 356777777766533 2 2355678 999998877642 22344 67788999999999999 576 47888889
Q ss_pred cccCCEEeeCCC-Ccc
Q 044539 200 LFLLRYLNLNIP-SLK 214 (217)
Q Consensus 200 L~~LryL~L~~t-~i~ 214 (217)
+++|++|++++| .++
T Consensus 167 ~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 167 CSRLDELNLSWCFDFT 182 (336)
T ss_dssp CTTCCEEECCCCTTCC
T ss_pred CCCCCEEcCCCCCCcC
Confidence 999999999998 775
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.11 E-value=0.0011 Score=56.30 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=25.9
Q ss_pred CceeEEEeCCCCCccCCccccccccCCEEeeCCCCcccC
Q 044539 178 NFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 178 ~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~~L 216 (217)
..|+.|+++++.+..+| .++.+.+|++|+++++.++.+
T Consensus 215 ~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 215 LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSC
T ss_pred CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcc
Confidence 35666666666666666 377777777777777766654
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.11 E-value=0.00093 Score=54.52 Aligned_cols=88 Identities=15% Similarity=0.032 Sum_probs=58.2
Q ss_pred CCCceeEEEEeCCCCc-cc--cccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCcee-EEEeCCCCCccCC-cccccc
Q 044539 126 LRENVKRFTAHGNLND-FE--FLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLR-VLDLGSLVLIRYP-SEVENL 200 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~-~~--~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~Lr-vLdL~~~~i~~lP-~~I~~L 200 (217)
.+...++|.+..+... ++ .+.+++ +|+.|.+.++... ..++...|.+++.|+ ++.+.++.+..+| +.++.|
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~---~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVL---EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTC---CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCC---CccChhHhhcchhhhhhhcccCCcccccCchhhhhc
Confidence 3567888888887765 32 256788 9999998876531 122214566666655 4566666777664 556778
Q ss_pred ccCCEEeeCCCCcccCC
Q 044539 201 FLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 201 ~~LryL~L~~t~i~~L~ 217 (217)
.+|++|++++++++.++
T Consensus 104 ~~L~~L~l~~n~l~~~~ 120 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLP 120 (350)
T ss_dssp TTCCEEEEEEECCSSCC
T ss_pred cccccccccccccccCC
Confidence 88888888887776543
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.06 E-value=0.002 Score=56.98 Aligned_cols=78 Identities=18% Similarity=-0.004 Sum_probs=57.2
Q ss_pred CCCceeEEEEeCCCCc-cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCccccccccCC
Q 044539 126 LRENVKRFTAHGNLND-FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPSEVENLFLLR 204 (217)
Q Consensus 126 ~~~~~r~ls~~~~~~~-~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~Lr 204 (217)
...+.+.|.+..+... ++. .++ +|+.|.+.++.-. .++ . .+++|+.|+|++|.+..+|.. +++|+
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~--~l~-~L~~L~Ls~N~l~----~l~-~---~l~~L~~L~L~~N~l~~lp~~---l~~L~ 144 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV--LPP-GLLELSIFSNPLT----HLP-A---LPSGLCKLWIFGNQLTSLPVL---PPGLQ 144 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC--CCT-TCCEEEECSCCCC----CCC-C---CCTTCCEEECCSSCCSCCCCC---CTTCC
T ss_pred cCCCCCEEEcCCCcCCcCCC--CCC-CCCEEECcCCcCC----CCC-C---CCCCcCEEECCCCCCCcCCCC---CCCCC
Confidence 3567888888887654 333 678 9999999876542 233 2 567888899998888888874 47888
Q ss_pred EEeeCCCCcccCC
Q 044539 205 YLNLNIPSLKSLL 217 (217)
Q Consensus 205 yL~L~~t~i~~L~ 217 (217)
+|+|++|.++.+|
T Consensus 145 ~L~Ls~N~l~~l~ 157 (622)
T 3g06_A 145 ELSVSDNQLASLP 157 (622)
T ss_dssp EEECCSSCCSCCC
T ss_pred EEECcCCcCCCcC
Confidence 8888888877654
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.00 E-value=0.0012 Score=57.76 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=29.1
Q ss_pred eEEEeCCCCCccCCccccccccCCEEeeCCCCcc
Q 044539 181 RVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 181 rvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
+.|+|++|.+..+|..+++|++|++|+|++|.++
T Consensus 210 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 210 IFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp EEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred eEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 8888888888888888888888888888888775
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.90 E-value=0.00072 Score=55.78 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=22.3
Q ss_pred hhhcCCCceeEEEeCCCCCcc-----CCccc--cccccCCEEeeCCCCcc
Q 044539 172 KICKMFNFLRVLDLGSLVLIR-----YPSEV--ENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~-----lP~~I--~~L~~LryL~L~~t~i~ 214 (217)
..+.+++.|+.|+|++|.+.. +|+.+ +++++|++|+|++|.++
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 444555555555555555442 34444 33555555555555554
No 136
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.88 E-value=0.00029 Score=56.83 Aligned_cols=83 Identities=13% Similarity=0.009 Sum_probs=58.9
Q ss_pred CCceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCC-CCcc--CCcccccc
Q 044539 127 RENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSL-VLIR--YPSEVENL 200 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~-~i~~--lP~~I~~L 200 (217)
..+.+++.+..+... ......++ +|++|.+.++..- ....++ ..+.++++|+.|+|++| .+.. +|..++.+
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~-~L~~L~L~~~~~l-~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGF-SEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCT-TCSEEECTTCBSC-CHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCC-CCCEEECCCCCCC-CHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 356778887766543 23355678 8999988876321 111244 66788889999999998 7763 67788888
Q ss_pred c-cCCEEeeCCCC
Q 044539 201 F-LLRYLNLNIPS 212 (217)
Q Consensus 201 ~-~LryL~L~~t~ 212 (217)
+ +|++|+|++|.
T Consensus 194 ~~~L~~L~l~~~~ 206 (336)
T 2ast_B 194 SETITQLNLSGYR 206 (336)
T ss_dssp CTTCCEEECCSCG
T ss_pred ccCCCEEEeCCCc
Confidence 8 99999998883
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.55 E-value=0.0056 Score=49.82 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=12.6
Q ss_pred hhhcCCCceeEEEeCCCCCccCCc
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPS 195 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~ 195 (217)
..|..+++|++|||+++.++.+|.
T Consensus 196 ~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 196 DVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp TTTTTEECCSEEECTTSCCCCCCS
T ss_pred HHhccCcccchhhcCCCCcCccCh
Confidence 344555555555555555555553
No 138
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.42 E-value=0.0043 Score=45.75 Aligned_cols=83 Identities=11% Similarity=0.080 Sum_probs=58.2
Q ss_pred CceeEEEEeCCCCc---cccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCC----CceeEEEeCCCC-Ccc-CCcccc
Q 044539 128 ENVKRFTAHGNLND---FEFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMF----NFLRVLDLGSLV-LIR-YPSEVE 198 (217)
Q Consensus 128 ~~~r~ls~~~~~~~---~~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l----~~LrvLdL~~~~-i~~-lP~~I~ 198 (217)
....++-+...... +.....++ +|++|.+.++..- ....+ ..+..+ +.|+.|+|++|. |+. =-..+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~I-tD~gL--~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYI-EDGCL--ERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTC-CHHHH--HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCcc-CHHHH--HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 45778888766543 44466899 9999999988642 11122 445554 479999999997 662 114577
Q ss_pred ccccCCEEeeCCCC-cc
Q 044539 199 NLFLLRYLNLNIPS-LK 214 (217)
Q Consensus 199 ~L~~LryL~L~~t~-i~ 214 (217)
.+++|++|+|++|. |+
T Consensus 137 ~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GCTTCCEEEEESCTTCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 89999999999985 54
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.26 E-value=0.0016 Score=54.73 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=16.4
Q ss_pred ceeEEEeCCCCCc-----cCCccccccccCCEEeeCCCCc
Q 044539 179 FLRVLDLGSLVLI-----RYPSEVENLFLLRYLNLNIPSL 213 (217)
Q Consensus 179 ~LrvLdL~~~~i~-----~lP~~I~~L~~LryL~L~~t~i 213 (217)
.|+.|+|++|.+. .+|+.++.+++|++|+|+++.+
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 3455555554443 2344444444555555544443
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.23 E-value=0.0023 Score=50.47 Aligned_cols=43 Identities=33% Similarity=0.199 Sum_probs=36.6
Q ss_pred hcCCCceeEEEeCCCCCccC---CccccccccCCEEeeCCCCcccC
Q 044539 174 CKMFNFLRVLDLGSLVLIRY---PSEVENLFLLRYLNLNIPSLKSL 216 (217)
Q Consensus 174 ~~~l~~LrvLdL~~~~i~~l---P~~I~~L~~LryL~L~~t~i~~L 216 (217)
..+++.|+.|+|+++.+..+ |..++.+++|++|+|+++.|+.+
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 35788999999999997754 46778999999999999998754
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.04 E-value=0.0025 Score=55.30 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=43.4
Q ss_pred CCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCc--cCCccccccccCCEEeeCCCCcc
Q 044539 148 FDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLI--RYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 148 ~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~--~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
++ +|+.|.+..+.. ....++ ..+..+++|++|+|++|.+. .+|..+..+++||+|+|++|+++
T Consensus 462 ~~-~L~~L~L~~n~l--~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SP-NVRWMLLGYVGE--SDEGLM-EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CT-TCCEEEECSCCS--SHHHHH-HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred Cc-cceEeeccCCCC--CHHHHH-HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 55 677776655432 111333 55677888999999888865 35556678889999999888775
No 142
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.75 E-value=0.0024 Score=53.65 Aligned_cols=86 Identities=14% Similarity=-0.023 Sum_probs=59.4
Q ss_pred CCceeEEEEeCCCCc---ccc-ccCCCCCeeEEEEeCCCCCC-CCcccchhhhcCCCceeEEEeCCCCCcc-CCcccc-c
Q 044539 127 RENVKRFTAHGNLND---FEF-LDHFDSFLHSLLHLTLGSHY-LDPNYCEKICKMFNFLRVLDLGSLVLIR-YPSEVE-N 199 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~---~~~-~~~~~~~LrsL~~~~~~~~~-~~~~l~~~~~~~l~~LrvLdL~~~~i~~-lP~~I~-~ 199 (217)
+...+++.+..+... ... ...++ ++++|.+.++.-.. ....++ ..+..+++|++|+|+++.+.. -+..+. .
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQ-QCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHT-TCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcC-CccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 345677888766654 222 55688 99999998876420 001344 678888999999999998763 333444 3
Q ss_pred cc----cCCEEeeCCCCcc
Q 044539 200 LF----LLRYLNLNIPSLK 214 (217)
Q Consensus 200 L~----~LryL~L~~t~i~ 214 (217)
+. +|++|+|++|.++
T Consensus 80 l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp TCSTTCCCCEEECTTSCCB
T ss_pred HhhCCCceeEEEccCCCCC
Confidence 55 6999999999886
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.34 E-value=0.015 Score=42.85 Aligned_cols=62 Identities=3% Similarity=-0.024 Sum_probs=45.4
Q ss_pred CCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCC-Ccc-CCcccccc----ccCCEEeeCCCC-cc
Q 044539 148 FDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLV-LIR-YPSEVENL----FLLRYLNLNIPS-LK 214 (217)
Q Consensus 148 ~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~-i~~-lP~~I~~L----~~LryL~L~~t~-i~ 214 (217)
-. +|+.|.+.++.. ....+ ..+.++++|+.|+|++|. ++. =-..|+.+ .+|++|+|++|. |+
T Consensus 60 ~~-~L~~LDLs~~~I--td~GL--~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 60 KY-KIQAIDATDSCI--MSIGF--DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CC-CEEEEEEESCCC--CGGGG--GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred Cc-eEeEEeCcCCCc--cHHHH--HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 34 799999998763 22334 567899999999999997 652 22446665 379999999985 65
No 144
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.00 E-value=0.023 Score=39.56 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=29.3
Q ss_pred CceeEEEeCCCCCccCCccc-cccccCCEEeeCCCCc
Q 044539 178 NFLRVLDLGSLVLIRYPSEV-ENLFLLRYLNLNIPSL 213 (217)
Q Consensus 178 ~~LrvLdL~~~~i~~lP~~I-~~L~~LryL~L~~t~i 213 (217)
..|+.|+|+++.|+.+|... ..|.+|++|+|+++..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 35889999999999888654 6788999999988754
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.98 E-value=0.0056 Score=50.57 Aligned_cols=43 Identities=14% Similarity=-0.017 Sum_probs=23.8
Q ss_pred hhhcCCCceeEEEeCCCCCc-----cCCccccccccCCEEeeCCCCcc
Q 044539 172 KICKMFNFLRVLDLGSLVLI-----RYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~-----~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
..+...+.|+.|+|++|.+. .+++.+...+.|++|+|++|.|.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 33445556666666666654 23344445566666666666553
No 146
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=94.88 E-value=0.017 Score=47.13 Aligned_cols=84 Identities=26% Similarity=0.174 Sum_probs=51.9
Q ss_pred ceeEEEEeCCCCcc---ccccCC-----CCCeeEEEEeCCCCCC-CCcccchhhhcCC-CceeEEEeCCCCCccCCc-cc
Q 044539 129 NVKRFTAHGNLNDF---EFLDHF-----DSFLHSLLHLTLGSHY-LDPNYCEKICKMF-NFLRVLDLGSLVLIRYPS-EV 197 (217)
Q Consensus 129 ~~r~ls~~~~~~~~---~~~~~~-----~~~LrsL~~~~~~~~~-~~~~l~~~~~~~l-~~LrvLdL~~~~i~~lP~-~I 197 (217)
+.+.+.+..+.... .....+ + .|++|.+.++.-.. ....+. ..+..+ +.|+.|+|++|.+...+. .+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 129 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSSDELV-KTLAAIPFTITVLDLGWNDFSSKSSSEF 129 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCHHHHH-HHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCC-CccEEECcCCcCChHHHHHHH-HHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence 67778887765441 112222 6 88888887765321 001111 235555 789999999988775553 33
Q ss_pred c----cc-ccCCEEeeCCCCcc
Q 044539 198 E----NL-FLLRYLNLNIPSLK 214 (217)
Q Consensus 198 ~----~L-~~LryL~L~~t~i~ 214 (217)
+ .+ .+|++|+|++|.++
T Consensus 130 ~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 130 KQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCceeEEEccCCcCC
Confidence 3 32 58999999988876
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.66 E-value=0.0071 Score=49.79 Aligned_cols=30 Identities=17% Similarity=0.025 Sum_probs=14.7
Q ss_pred CceeEEEEeCCCCc---ccc--ccCCCCCeeEEEEe
Q 044539 128 ENVKRFTAHGNLND---FEF--LDHFDSFLHSLLHL 158 (217)
Q Consensus 128 ~~~r~ls~~~~~~~---~~~--~~~~~~~LrsL~~~ 158 (217)
.+.++|.+..+... ... ...++ .|+.|.+.
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp-~L~~L~L~ 227 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLP-NLEKLVLY 227 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCT-TCCEEEEE
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCC-CCcEEEEe
Confidence 44556666544332 111 12566 67776654
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.42 E-value=0.0099 Score=49.03 Aligned_cols=85 Identities=11% Similarity=-0.152 Sum_probs=58.7
Q ss_pred CceeEEEEeCCCCcc------cc-c-cCCCCCeeEEEEeCCCCCC-CCcccchhhhcCCCceeEEEeCCCCCc-----cC
Q 044539 128 ENVKRFTAHGNLNDF------EF-L-DHFDSFLHSLLHLTLGSHY-LDPNYCEKICKMFNFLRVLDLGSLVLI-----RY 193 (217)
Q Consensus 128 ~~~r~ls~~~~~~~~------~~-~-~~~~~~LrsL~~~~~~~~~-~~~~l~~~~~~~l~~LrvLdL~~~~i~-----~l 193 (217)
.+.+++.+..+.... .. . ...+ .|++|.+.++.-.. ....+. ..+...+.|++|+|++|.+. .+
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~-~~L~~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQC-QITTLRLSNNPLTAAGVAVLM-EGLAGNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTC-CCCEEECCSSCCHHHHHHHHH-HHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCC-ccceeeCCCCCCChHHHHHHH-HHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence 356778877776541 11 1 2356 89999988765320 011233 45678889999999999876 45
Q ss_pred CccccccccCCEEeeCCCCcc
Q 044539 194 PSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 194 P~~I~~L~~LryL~L~~t~i~ 214 (217)
++.+....+|++|+|++|.|+
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHhcCCCcCeEECCCCCCC
Confidence 677788889999999999886
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.27 E-value=0.018 Score=49.80 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=38.0
Q ss_pred CCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCc--cCCccccccccCCEEeeCCCCc
Q 044539 148 FDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLI--RYPSEVENLFLLRYLNLNIPSL 213 (217)
Q Consensus 148 ~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~--~lP~~I~~L~~LryL~L~~t~i 213 (217)
++ +|+.|.+.++... ...+. .....+++|+.|+|++|.+. .++.-+..+++|++|++++|.+
T Consensus 455 ~~-~L~~L~L~~~~i~--~~~~~-~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AK-KMEMLSVAFAGDS--DLGMH-HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CT-TCCEEEEESCCSS--HHHHH-HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ch-hccEeeccCCCCc--HHHHH-HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 45 6666666554321 11222 23366788888888888864 2223445678888888888876
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.24 E-value=0.013 Score=43.28 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=58.0
Q ss_pred CceeEEEEeCC-CCc-------cccccCCCCCeeEEEEeCCCCCC-CCcccchhhhcCCCceeEEEeCCCCCc-----cC
Q 044539 128 ENVKRFTAHGN-LND-------FEFLDHFDSFLHSLLHLTLGSHY-LDPNYCEKICKMFNFLRVLDLGSLVLI-----RY 193 (217)
Q Consensus 128 ~~~r~ls~~~~-~~~-------~~~~~~~~~~LrsL~~~~~~~~~-~~~~l~~~~~~~l~~LrvLdL~~~~i~-----~l 193 (217)
...+++.+..+ ... .......+ .|++|.+.++.-.. ....+. ..+...+.|+.|+|++|.+. .+
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~-~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALA-EMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHH-HHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHH-HHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 45667777765 443 12244567 89999887765421 011233 55667788999999999876 36
Q ss_pred CccccccccCCEEee--CCCCcc
Q 044539 194 PSEVENLFLLRYLNL--NIPSLK 214 (217)
Q Consensus 194 P~~I~~L~~LryL~L--~~t~i~ 214 (217)
.+.+.....|++|+| +++.|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHhCCCceEEEecCCCCCCC
Confidence 777888889999999 778775
No 151
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=94.21 E-value=0.032 Score=45.43 Aligned_cols=73 Identities=15% Similarity=-0.055 Sum_probs=51.6
Q ss_pred ccccCCCCCeeEEEEeCCCCCCCC-cccchhhhcCCC-ceeEEEeCCCCCccC-Ccccccc-----ccCCEEeeCCCCcc
Q 044539 143 EFLDHFDSFLHSLLHLTLGSHYLD-PNYCEKICKMFN-FLRVLDLGSLVLIRY-PSEVENL-----FLLRYLNLNIPSLK 214 (217)
Q Consensus 143 ~~~~~~~~~LrsL~~~~~~~~~~~-~~l~~~~~~~l~-~LrvLdL~~~~i~~l-P~~I~~L-----~~LryL~L~~t~i~ 214 (217)
+.....+..++.|.+.++.-.... ..+. ..+.+++ .|+.|+|++|.+... |..++.+ .+|++|+|++|.++
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELI-QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHH-HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHH-HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 334444426999999876642110 1122 4567787 899999999998754 6777776 99999999999987
Q ss_pred cC
Q 044539 215 SL 216 (217)
Q Consensus 215 ~L 216 (217)
..
T Consensus 94 ~~ 95 (362)
T 3goz_A 94 YK 95 (362)
T ss_dssp GS
T ss_pred hH
Confidence 53
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=93.96 E-value=0.021 Score=49.45 Aligned_cols=16 Identities=6% Similarity=-0.045 Sum_probs=7.2
Q ss_pred cccchHh-HHHHHHHhh
Q 044539 22 YCMLHFY-LKLCCLYLS 37 (217)
Q Consensus 22 Y~~Lp~~-lk~Cfl~~s 37 (217)
.+.||++ +-..|-|+.
T Consensus 6 ~~~LPdevL~~If~~L~ 22 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQ 22 (594)
T ss_dssp ----CHHHHHHHHHTCC
T ss_pred hhhCCHHHHHHHHhhcC
Confidence 3567776 566665543
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.85 E-value=0.021 Score=42.11 Aligned_cols=86 Identities=17% Similarity=0.007 Sum_probs=60.0
Q ss_pred CCceeEEEEeCCCCc-------cccccCCCCCeeEEEEeCCCCCC-CCcccchhhhcCCCceeEEEe--CCCCCc-----
Q 044539 127 RENVKRFTAHGNLND-------FEFLDHFDSFLHSLLHLTLGSHY-LDPNYCEKICKMFNFLRVLDL--GSLVLI----- 191 (217)
Q Consensus 127 ~~~~r~ls~~~~~~~-------~~~~~~~~~~LrsL~~~~~~~~~-~~~~l~~~~~~~l~~LrvLdL--~~~~i~----- 191 (217)
....+.|.+..+... .......+ .|++|.+.++.... ....+. ..+...+.|+.|+| +++.+.
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g~~~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSGILALV-EALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHHHHH-HGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHHHHHHH-HHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 356788888877754 12234557 89999988765421 011233 56778889999999 778876
Q ss_pred cCCccccccccCCEEeeCCCCcc
Q 044539 192 RYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 192 ~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
.+.+.+.....|++|+|++|.|.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 35566667789999999998864
No 154
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.48 E-value=0.12 Score=44.60 Aligned_cols=39 Identities=21% Similarity=0.025 Sum_probs=20.2
Q ss_pred cCCCceeEEEeCCCCCccCCccccccccCCEEeeCCCCc
Q 044539 175 KMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLNIPSL 213 (217)
Q Consensus 175 ~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~~t~i 213 (217)
..+++|+.|+++++....+|..+..+++|++|+|++|.+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 334444444444443444555555566666666665553
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=91.67 E-value=0.28 Score=39.21 Aligned_cols=82 Identities=11% Similarity=0.010 Sum_probs=47.0
Q ss_pred CceeEEEEeCCCCc-c--ccccCCCCCeeEEEEeCCCCCCCCcccchhhhcCCCcee-EEEeCCCCCccCC-cccccccc
Q 044539 128 ENVKRFTAHGNLND-F--EFLDHFDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLR-VLDLGSLVLIRYP-SEVENLFL 202 (217)
Q Consensus 128 ~~~r~ls~~~~~~~-~--~~~~~~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~Lr-vLdL~~~~i~~lP-~~I~~L~~ 202 (217)
.+.+.+.+..+... + ..+..++ +|+++.+.++- ..+.+ ..|..+..|+ .|+|.+ .++.++ ..+..+.+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~-~L~~l~l~~ni----~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKK-YLLKIKLPHNL----KTIGQ-RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCT-TCCEEECCTTC----CEECT-TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred CCCeEEECCCCCcceecHhhhhCCC-CCCEEECCccc----ceehH-HHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 34455555443222 1 2355566 77777665532 12333 6677777777 777766 555554 45667777
Q ss_pred CCEEeeCCCCcccC
Q 044539 203 LRYLNLNIPSLKSL 216 (217)
Q Consensus 203 LryL~L~~t~i~~L 216 (217)
|+.|++++++|+.+
T Consensus 299 L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 299 LRYVLATGDKITTL 312 (329)
T ss_dssp EEEEEECSSCCCEE
T ss_pred CCEEEeCCCccCcc
Confidence 77777776666544
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=89.84 E-value=0.36 Score=39.52 Aligned_cols=11 Identities=36% Similarity=0.187 Sum_probs=5.9
Q ss_pred ccccCCEEeeC
Q 044539 199 NLFLLRYLNLN 209 (217)
Q Consensus 199 ~L~~LryL~L~ 209 (217)
.+++|++|+|+
T Consensus 217 ~lp~L~~L~L~ 227 (362)
T 2ra8_A 217 DLPNLEKLVLY 227 (362)
T ss_dssp BCTTCCEEEEE
T ss_pred cCCCCcEEEEe
Confidence 45555555553
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=85.75 E-value=0.78 Score=31.56 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=28.7
Q ss_pred eEEEeCCCCCc--cCCccccccccCCEEeeCCCCcccCC
Q 044539 181 RVLDLGSLVLI--RYPSEVENLFLLRYLNLNIPSLKSLL 217 (217)
Q Consensus 181 rvLdL~~~~i~--~lP~~I~~L~~LryL~L~~t~i~~L~ 217 (217)
.+++.++.+++ .+|..|. .+|++|+|++++|+.|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~ 47 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALP 47 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccC
Confidence 37789998888 8997544 47999999999998875
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=84.86 E-value=0.96 Score=36.00 Aligned_cols=61 Identities=18% Similarity=-0.025 Sum_probs=44.6
Q ss_pred CCCCeeEEEEeCCCCCCCCcccchhhhcCCCceeEEEeCCCCCccCCc-cccccccCC-EEeeCCCCccc
Q 044539 148 FDSFLHSLLHLTLGSHYLDPNYCEKICKMFNFLRVLDLGSLVLIRYPS-EVENLFLLR-YLNLNIPSLKS 215 (217)
Q Consensus 148 ~~~~LrsL~~~~~~~~~~~~~l~~~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~Lr-yL~L~~t~i~~ 215 (217)
++ .|+++.+.++.- ..+.+ ..|..+.+|+.|+|.++ ++.+++ .+..+.+|+ .+.+.. +++.
T Consensus 225 ~~-~L~~l~L~~n~i---~~I~~-~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~ 287 (329)
T 3sb4_A 225 MP-NLVSLDISKTNA---TTIPD-FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA 287 (329)
T ss_dssp CT-TCCEEECTTBCC---CEECT-TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred cC-CCeEEECCCCCc---ceecH-hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE
Confidence 67 888888775432 22333 77899999999999886 776664 467888999 999976 5544
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=62.32 E-value=3.8 Score=30.44 Aligned_cols=63 Identities=11% Similarity=-0.006 Sum_probs=37.5
Q ss_pred CCCCCeeEEEEeCCCCCC-CCcccchhhhcCCCceeEEEeCCCCCc-----cCCccccccccCCEEeeCCC
Q 044539 147 HFDSFLHSLLHLTLGSHY-LDPNYCEKICKMFNFLRVLDLGSLVLI-----RYPSEVENLFLLRYLNLNIP 211 (217)
Q Consensus 147 ~~~~~LrsL~~~~~~~~~-~~~~l~~~~~~~l~~LrvLdL~~~~i~-----~lP~~I~~L~~LryL~L~~t 211 (217)
.-. .|+.|.+.++.... ....+- ..+..-+.|+.|+|+++.|. .+-+.+..=..|++|+|+++
T Consensus 68 ~N~-~L~~L~L~~n~igd~ga~alA-~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 68 NSK-HIEKFSLANTAISDSEARGLI-ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TCS-CCCEEECTTSCCBHHHHTTHH-HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hCC-CcCEEEccCCCCChHHHHHHH-HHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 445 77888776654321 011233 55666677888888888765 23334444456888888654
No 160
>2kzc_A Uncharacterized protein; DUF1476, JCSG, structutral genomics, PSI-biology, protein ST initiative, structural genomics; NMR {Jannaschia SP}
Probab=61.75 E-value=12 Score=23.62 Aligned_cols=36 Identities=28% Similarity=0.576 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHc--CCCCCChHHHHHHHHHHHHhCCCcccee
Q 044539 46 STKQLYQLWIAE--GFIPDNNEAIAERYLEQLINGGFVDVGK 85 (217)
Q Consensus 46 ~~~~Li~~Wiae--G~i~~~~e~~~~~~~~~L~~r~l~~~~~ 85 (217)
.+++|+-+|.|+ |.- .+.++.|..+++...|-++.+
T Consensus 9 RRNklLglWAAe~lGlt----g~~aeaYa~~vv~adfee~gd 46 (85)
T 2kzc_A 9 RRNKLMGLWVAEVLGKS----GDEANAYAAEVVKADFEEAGH 46 (85)
T ss_dssp HHHHHHHHHHHHHHTCC----HHHHHHHHHHGGGSSSSSSSS
T ss_pred HHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHhcccCCH
Confidence 588999999998 554 678999999999998877643
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=61.67 E-value=9.2 Score=31.45 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=25.1
Q ss_pred hhhcCCCceeEEEeCCCCCccCCccccccccCCEEeeC
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPSEVENLFLLRYLNLN 209 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~~I~~L~~LryL~L~ 209 (217)
..|..+++|+.++|.++.++.+|.......+|+.+.|.
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 66778888888888877666666544444555555554
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=56.26 E-value=20 Score=29.39 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=20.8
Q ss_pred hhhcCCCceeEEEeCCCCCccCC-ccccccccCCEEeeCCCCccc
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYP-SEVENLFLLRYLNLNIPSLKS 215 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP-~~I~~L~~LryL~L~~t~i~~ 215 (217)
..|..+..|+.+.|.. .++.++ ..+.++ +|+.+.+.++.+..
T Consensus 317 ~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred hhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 3444555555555533 233332 233445 66777766655443
No 163
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=55.36 E-value=14 Score=29.82 Aligned_cols=68 Identities=16% Similarity=0.044 Sum_probs=44.7
Q ss_pred HHHHccccchHhHHHHHHHhhhcC--CCCeecHHHHHHHHH--H---cCCCCCChHHHHHHHHHHHHhCCCcccee
Q 044539 17 LQVVAYCMLHFYLKLCCLYLSVFL--VYFEISTKQLYQLWI--A---EGFIPDNNEAIAERYLEQLINGGFVDVGK 85 (217)
Q Consensus 17 ~l~lsY~~Lp~~lk~Cfl~~s~Fp--~~~~i~~~~Li~~Wi--a---eG~i~~~~e~~~~~~~~~L~~r~l~~~~~ 85 (217)
.+.-++..||.+.+.++..++.+. .+..++..++...+. + .|. .+........++++|.+.+++....
T Consensus 298 ~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 298 IQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp --CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred hHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 344566889999999999888764 334566666665542 2 232 1112455678899999999998754
No 164
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=52.37 E-value=5.2 Score=31.39 Aligned_cols=70 Identities=13% Similarity=-0.051 Sum_probs=35.3
Q ss_pred HHHHHHHccccchHhHHHHHHHhhhcCCCC-----------eecHHHHHH----HHHHcCCCCCC-----hHHHHHHHHH
Q 044539 14 LRGLQVVAYCMLHFYLKLCCLYLSVFLVYF-----------EISTKQLYQ----LWIAEGFIPDN-----NEAIAERYLE 73 (217)
Q Consensus 14 i~~~l~lsY~~Lp~~lk~Cfl~~s~Fp~~~-----------~i~~~~Li~----~WiaeG~i~~~-----~e~~~~~~~~ 73 (217)
+...+..++..++..-+..+....-.-.+- .+++..|.+ +-+..|+|... ..+.|.+||+
T Consensus 234 ~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~ 313 (324)
T 1hqc_A 234 ALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLG 313 (324)
T ss_dssp HHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTT
T ss_pred HHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHh
Confidence 333444455556655555555444222222 144444333 34567888543 6788888887
Q ss_pred -HHHhCCCccc
Q 044539 74 -QLINGGFVDV 83 (217)
Q Consensus 74 -~L~~r~l~~~ 83 (217)
++.+|+++||
T Consensus 314 ~~~~~~~~~~~ 324 (324)
T 1hqc_A 314 YPPPVGPLLEP 324 (324)
T ss_dssp CCCCC------
T ss_pred cCCCCCCCCCC
Confidence 8888888875
No 165
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=49.56 E-value=19 Score=23.92 Aligned_cols=39 Identities=5% Similarity=0.180 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 46 STKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 46 ~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
.=.+||.|.+..+.+.. .+.|..+-+.|++.++|+++..
T Consensus 39 ~GselVdWLi~~~~~~~--R~EAv~lgq~Ll~~G~i~hV~d 77 (109)
T 1uhw_A 39 TGSGVIDWLVSNKLVRN--RQEGLMISASLLSEGYLQPAGD 77 (109)
T ss_dssp CHHHHHHHHHHHTSSSS--HHHHHHHHHHHHHHTSSEECSS
T ss_pred cchHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCeEEeCcc
Confidence 45688998888887766 5678888899999999999854
No 166
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=48.08 E-value=23 Score=24.17 Aligned_cols=39 Identities=8% Similarity=0.172 Sum_probs=31.4
Q ss_pred ecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCcccee
Q 044539 45 ISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGK 85 (217)
Q Consensus 45 i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~ 85 (217)
|.=.++|.|.+..+.+.. .+.|..+-+.|++.|+|+++.
T Consensus 48 F~GsdlVdWLl~~~~~~s--R~EAv~lg~~Ll~~G~i~hV~ 86 (127)
T 2cso_A 48 FTGNCVIDWLVSNQSVRN--RQEGLMIASSLLNEGYLQPAG 86 (127)
T ss_dssp EEHHHHHHHHHHTTSCSS--HHHHHHHHHHHHHHTSSEEES
T ss_pred eechHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCeEEeCc
Confidence 345688998888887666 567888889999999999984
No 167
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=43.40 E-value=7.5 Score=20.55 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=7.5
Q ss_pred hhcCCCCee
Q 044539 37 SVFLVYFEI 45 (217)
Q Consensus 37 s~Fp~~~~i 45 (217)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 789999876
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=39.14 E-value=18 Score=26.70 Aligned_cols=67 Identities=12% Similarity=-0.012 Sum_probs=46.2
Q ss_pred cCCCCCeeEEEEeCC-CCCC-CCcccchhhhcCCCceeEEEeCCCCCc-----cCCccccccccCCEEeeCCCCcc
Q 044539 146 DHFDSFLHSLLHLTL-GSHY-LDPNYCEKICKMFNFLRVLDLGSLVLI-----RYPSEVENLFLLRYLNLNIPSLK 214 (217)
Q Consensus 146 ~~~~~~LrsL~~~~~-~~~~-~~~~l~~~~~~~l~~LrvLdL~~~~i~-----~lP~~I~~L~~LryL~L~~t~i~ 214 (217)
..-+ .|+.|.+.+. .... ....+. ..++.-+.|+.|+|++|.+. .+-+.+..=..|++|+|+++.|.
T Consensus 38 ~~n~-~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDT-DLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCS-SCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCC-CccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3455 8899988654 2110 111233 66788899999999999976 34444555578999999998875
No 169
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=34.10 E-value=48 Score=22.20 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=31.4
Q ss_pred ecHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCcccee
Q 044539 45 ISTKQLYQLWIAEGFIPDNNEAIAERYLEQLINGGFVDVGK 85 (217)
Q Consensus 45 i~~~~Li~~WiaeG~i~~~~e~~~~~~~~~L~~r~l~~~~~ 85 (217)
|.=.++|.|.+..+.+.. .+.|..+-+.|++.++|+++.
T Consensus 38 F~GsdlVdWL~~~~~~~s--R~eAv~lgq~Ll~~G~i~hV~ 76 (120)
T 1v3f_A 38 FLGSSLVDWLISSNFAAS--RLEAVTLASMLMEENFLRPVG 76 (120)
T ss_dssp EEHHHHHHHHHHTTSCSS--HHHHHHHHHHHHHHTSEEECS
T ss_pred eehHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCeEEcc
Confidence 456788888888877655 666788889999999999986
No 170
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=32.10 E-value=89 Score=20.27 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHcC-CCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 46 STKQLYQLWIAEG-FIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 46 ~~~~Li~~WiaeG-~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
.=.++|.|.+..+ -+.. .+.|..+-+.|++.|+|+.+..
T Consensus 52 ~G~dlVdWL~~~~~~~~~--r~eAv~lg~~Ll~~G~I~hv~~ 91 (105)
T 1fsh_A 52 IGADVVDWLYTHVEGFKE--RREARKYASSMLKHGFLRHTVN 91 (105)
T ss_dssp HHHHHHHHHHHHCCCCSS--HHHHHHHHHHHHHTTTEECSSS
T ss_pred EcHHHHHHHHHhCcCCCC--HHHHHHHHHHHHHCCcEEEcCC
Confidence 4467888888875 3444 6678888899999999998754
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=31.01 E-value=1.4e+02 Score=23.46 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=17.8
Q ss_pred hhhcCCCceeEEEeCCCCCccCCc-cccccccCCEEee
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPS-EVENLFLLRYLNL 208 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~LryL~L 208 (217)
..|..+.+|+.+.+.++.++.+++ .+.++.+|+.+.|
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 345555556666655544443332 2234444555544
No 172
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.13 E-value=1.3e+02 Score=19.48 Aligned_cols=40 Identities=8% Similarity=0.037 Sum_probs=31.3
Q ss_pred ecHHHHHHHHHHc-------CCCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 45 ISTKQLYQLWIAE-------GFIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 45 i~~~~Li~~Wiae-------G~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
|.=.++|.+-+.. |.+.+ .+.|-.+-+.|++.++|+++..
T Consensus 41 F~GsE~VdWL~~~l~~~~~fg~~~s--R~eAv~lgq~Ll~~gvi~hV~~ 87 (105)
T 2ysr_A 41 FTAGEAVDWLYDLLRNNSNFGPEVT--RQQTIQLLRKFLKNHVIEDIKG 87 (105)
T ss_dssp EEHHHHHHHHHHHHHHSSSSTTTCC--HHHHHHHHHHHHHTTSSEESSC
T ss_pred ccchHHHHHHHHhcccccccCccCC--HHHHHHHHHHHHHCCCeEeccC
Confidence 3456778888877 66554 6778889999999999999864
No 173
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=25.01 E-value=1.4e+02 Score=23.73 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=22.6
Q ss_pred hhhcCCCceeEEEeCCCCCccCCc-cccccccCCEEeeCCC
Q 044539 172 KICKMFNFLRVLDLGSLVLIRYPS-EVENLFLLRYLNLNIP 211 (217)
Q Consensus 172 ~~~~~l~~LrvLdL~~~~i~~lP~-~I~~L~~LryL~L~~t 211 (217)
..|..+.+|+.+.|-. .++.+++ .+.++.+|+.+.+.++
T Consensus 328 ~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred hHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence 5566666666666643 2444442 3446677777777654
No 174
>2ll0_A Uncharacterized protein; structural genomics, joint center for structural genomics, J unknown function; NMR {Paracoccus denitrificans}
Probab=23.53 E-value=32 Score=22.59 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=27.6
Q ss_pred ecHHHHHHHHHHc--CCCCCChHHHHHHHHHHHHhCCCccce
Q 044539 45 ISTKQLYQLWIAE--GFIPDNNEAIAERYLEQLINGGFVDVG 84 (217)
Q Consensus 45 i~~~~Li~~Wiae--G~i~~~~e~~~~~~~~~L~~r~l~~~~ 84 (217)
-.+++|+-+|.|+ |.- .+.++.|..++|...|-++.
T Consensus 27 aRRNklLg~WAAe~lGlt----g~~a~aYa~~vV~adfee~g 64 (104)
T 2ll0_A 27 ARRNRLLGEWAAGLLGKT----GDDARAYALTVVTSDFDEPG 64 (104)
T ss_dssp HHHHHHHHHHHHHHHTCC----TTHHHHHHTTSSSCCTTCCC
T ss_pred HHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhccccCC
Confidence 3688999999998 444 45688899998888776653
No 175
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=23.28 E-value=2.7e+02 Score=21.73 Aligned_cols=64 Identities=20% Similarity=0.105 Sum_probs=42.3
Q ss_pred cccchHhHHHHHHHhhhcC---CCCeecHHHHHHHHHH----cCCCCCChHHHHHHHHHHHHhCCCccceec
Q 044539 22 YCMLHFYLKLCCLYLSVFL---VYFEISTKQLYQLWIA----EGFIPDNNEAIAERYLEQLINGGFVDVGKK 86 (217)
Q Consensus 22 Y~~Lp~~lk~Cfl~~s~Fp---~~~~i~~~~Li~~Wia----eG~i~~~~e~~~~~~~~~L~~r~l~~~~~~ 86 (217)
+..||.+.|..+..++.+. .+..++.+.+...+-. .|... .-......++++|.+++++.....
T Consensus 283 l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 283 LIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP-RVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC-CCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhCCCeEEeee
Confidence 4567888887777777665 3325677777665543 34221 124456689999999999998654
No 176
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.56 E-value=32 Score=19.00 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=7.1
Q ss_pred hhcCCCCee
Q 044539 37 SVFLVYFEI 45 (217)
Q Consensus 37 s~Fp~~~~i 45 (217)
++||+||.|
T Consensus 29 ~~LP~GY~i 37 (47)
T 2fho_A 29 AMFPEGYKV 37 (47)
T ss_dssp HHSCTTEEE
T ss_pred HhCCCCCee
Confidence 678888875
Done!