BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044541
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 187 KKSAKTPANNDQTKQQPHKSGGS--FPCKSCNRSFTTEGGLQSHTKAKHG 234
K + + +DQ K+ + G F CK+C R F+ L++HT+ G
Sbjct: 42 KDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTG 91
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 184 HPSKKSAKT-PANNDQTKQQPHKSG-GSFPCKSCNRSFTTEGGLQSHTKAKH 233
+P + K P +TK + H +G + C +C +SF + SH K+ H
Sbjct: 51 YPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 180 IATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKH 233
IA + K A ++ K P + S+ C CN F+T L H ++ H
Sbjct: 69 IAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 122
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 180 IATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKH 233
IA + K A ++ K P + S+ C CN F+T L H ++ H
Sbjct: 87 IAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>pdb|2GQJ|A Chain A, Solution Structure Of The Two Zf-C2h2 Like
Domains(493-575) Of Human Zinc Finger Protein Kiaa1196
Length = 98
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 209 SFPCKSCNRSFTTEGGLQSHTKAKHGA 235
+ C+ C + F ++ GL HT A+H A
Sbjct: 54 ALKCQHCRKQFKSKAGLNYHTMAEHSA 80
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 210 FPCKSCNRSFTTEGGLQSHTKAK 232
+ C CN SF T+G L H K+K
Sbjct: 3 YHCSYCNFSFKTKGNLTKHMKSK 25
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 210 FPCKSCNRSFTTEGGLQSHTKAK 232
+ C CN SF T+G L H K+K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSK 52
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 210 FPCKSCNRSFTTEGGL----QSHTKAKHGAPA 237
+ C C ++FT + GL QSHT +H P+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.306 0.122 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,772,294
Number of Sequences: 62578
Number of extensions: 145430
Number of successful extensions: 331
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 23
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 50 (23.9 bits)