BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044541
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M4U5|HDT2_MAIZE Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1
Length = 303
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 75/100 (75%), Gaps = 4/100 (4%)
Query: 138 TPKKAESSKKRPVESASKTYVPDKKAKFVTP--QKTEEKKGVSHIATPHPSKKSAKTPAN 195
TPKK E+ KKR E+A KT + DKKAK TP QKT KKG +H+ATPHP+K KTPAN
Sbjct: 205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPAN 262
Query: 196 NDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
ND+ ++ KSGGS PCKSC+++F +E LQ+H+KAKHGA
Sbjct: 263 NDKLTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 302
>sp|Q6V9I6|HDT1_SOLCH Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1
Length = 269
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 69/98 (70%), Gaps = 11/98 (11%)
Query: 138 TPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANND 197
TPKKAE +K+R +SA+KT V DKKAK TPQKT+ KKG H+ATPHPSK+++KTP
Sbjct: 181 TPKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKTP---- 236
Query: 198 QTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
KS GS CK CNRSF +EG L SH+KAKH A
Sbjct: 237 -------KSAGSHHCKPCNRSFGSEGALDSHSKAKHSA 267
>sp|Q8LJS2|HDT1_SOYBN Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1
Length = 295
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 124/223 (55%), Gaps = 33/223 (14%)
Query: 14 ATDDDDNSDSDEDKMDIRLVSNGKPELQAKPLSEKPIAVEPSASTAKQNKKDVKPKLKAD 73
A+D D+S+ DE+ + + NGKPEL+A E +PS S PK+ A
Sbjct: 104 ASDFSDSSEEDEE-LALEGQDNGKPELKA----EGAKVTKPSKSI---------PKIGAP 149
Query: 74 GSDSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEGTDESESDD 133
++D + DD++ + + D + ++ SG DE DDD + E ESD
Sbjct: 150 ----------AKAADPKKDEDDDSDDESDDDLAGEDESGSSDEMDDDSNSE----EESDG 195
Query: 134 EDEETP-KKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKT 192
+DEETP KK + KKRP ESA+KT + KKAK TP+KT+ KK V H+ATPHPSKK KT
Sbjct: 196 DDEETPAKKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKT 254
Query: 193 PANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
P + TK Q S G C SC +SFT E GLQ H KAKHG
Sbjct: 255 P---NSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHGG 294
>sp|O24591|HDT1_MAIZE Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1
Length = 307
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 72/105 (68%), Gaps = 9/105 (8%)
Query: 138 TPKKAESSKKRPVESAS-KTYVPDKKAKFVTP--QKTEEKKGVS-HIATPHPSKKSAKTP 193
TPKK E KKRP ES+ KT + DKKAK TP QKT KKG + H+ATPHP+K KT
Sbjct: 199 TPKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTI 256
Query: 194 ANNDQTKQQPH---KSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
NND++ + P KSGGS PCK C++SF +E LQ+H++AK GA
Sbjct: 257 VNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETALQAHSRAKMGA 301
>sp|Q9LZR5|HDT3_ARATH Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2
Length = 294
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Query: 160 DKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANND----QTKQQPHKSGGSFPCKSC 215
+KKAKFVTPQKT+ KK H+ATPHPSK++ K +QQ KS G+F CKSC
Sbjct: 213 NKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSC 272
Query: 216 NRSFTTEGGLQSHTKAKHGAPA 237
R+FT+E GLQSHTKAKH A A
Sbjct: 273 TRTFTSEMGLQSHTKAKHSAAA 294
>sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2
Length = 306
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 49/77 (63%), Gaps = 10/77 (12%)
Query: 138 TPKKAE-SSKKRPVESASKTYVPDKKAKFV-----TPQKTEEKKGVSHIATPHPSKKSAK 191
TPKK E +KKRP ES SKT V KKAK TPQKTEEKK H ATPHP+KK K
Sbjct: 199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGK 258
Query: 192 TPANNDQTKQQPHKSGG 208
+P N +Q+ KSGG
Sbjct: 259 SPVNANQSP----KSGG 271
>sp|Q9FVE6|HDT1_ARATH Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1
Length = 245
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 47/99 (47%), Gaps = 20/99 (20%)
Query: 138 TPKKAESSKKRPVESASKTYVPDKKAKF-VTPQKTEEKKGVSHIATPHPSKKSAKTPANN 196
TPKK SSKKR E+ K V KKAK VTPQKT+EKK
Sbjct: 164 TPKKPASSKKRANETTPKAPVSAKKAKVAVTPQKTDEKK-------------------KG 204
Query: 197 DQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
+ Q KS C SC ++F + L+SH KAKH A
Sbjct: 205 GKAANQSPKSASQVSCGSCKKTFNSGNALESHNKAKHAA 243
>sp|Q6GNP2|Z652A_XENLA Zinc finger protein 652-A OS=Xenopus laevis GN=znf652-a PE=2 SV=1
Length = 625
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 22/184 (11%)
Query: 74 GSDSDDSDLNTSS--------SDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEG 125
G D S + TSS DD ++ +DE N + DG ++ G D+ ++ D G
Sbjct: 154 GVAQDSSHIKTSSDDEEGDSGEDDQDSHEDEENNPLPLDGQTNMQHGNQDQKTENSDMVG 213
Query: 126 TDESESDDEDEETPKKAESSKKR---PVESAS----------KTYVPDKKAK-FVTPQKT 171
D + + +E K E+ K++ P E S +T DK + F T
Sbjct: 214 GDGTIPANSTKELGKGGEAPKRKKKTPKEPKSPSDKAKSEEKETLTCDKCPRVFNTRWYL 273
Query: 172 EEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKA 231
E+ V+H K K ++ + + C +CN++F L H K
Sbjct: 274 EKHMNVTHRRMQICDKCGKKFVLESELSLHLQTDCEKNIQCITCNKTFKKLWSLHEHIKI 333
Query: 232 KHGA 235
HG
Sbjct: 334 VHGY 337
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.298 0.119 0.324
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,051,495
Number of Sequences: 539616
Number of extensions: 4658194
Number of successful extensions: 105262
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2533
Number of HSP's successfully gapped in prelim test: 3081
Number of HSP's that attempted gapping in prelim test: 35065
Number of HSP's gapped (non-prelim): 28430
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 59 (27.3 bits)