BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044542
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 12/139 (8%)
Query: 259 NGVDETKFV-HDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHP 317
+GVD +F PE +KLG + + V+ RLV KG L +A + P
Sbjct: 170 SGVDVKRFTPATPEDKSATRKKLGF-TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARP 228
Query: 318 GVYLLVAGTGPWG---RRYA-ELGQNVKVLGALEAHQLSEFYNALDVFVNPT------LR 367
LL+ G+G + RR A ++ QNVK LG LE + A D+F P L
Sbjct: 229 DAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD 288
Query: 368 PQGLDLTLIEAMHCGRTVL 386
+GL + +EA CG V+
Sbjct: 289 VEGLGIVYLEAQACGVPVI 307
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 12/139 (8%)
Query: 259 NGVDETKFV-HDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHP 317
+GVD +F PE +KLG + + V+ RLV KG L +A + P
Sbjct: 170 SGVDVKRFTPATPEDKSATRKKLGF-TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARP 228
Query: 318 GVYLLVAGTGPWG---RRYA-ELGQNVKVLGALEAHQLSEFYNALDVFVNPT------LR 367
LL+ G+G + RR A ++ QNVK LG LE + A D+F P L
Sbjct: 229 DAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD 288
Query: 368 PQGLDLTLIEAMHCGRTVL 386
+GL + +EA CG V+
Sbjct: 289 VEGLGIVYLEAQACGVPVI 307
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 338 QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTV 397
NVK LG++ +L + Y+ + T + + LT IEA G+ V+ N TV
Sbjct: 78 DNVKFLGSVSEEELIDLYSRCKGLL-CTAKDEDFGLTPIEAXASGKPVIAVNEGGFKETV 136
Query: 398 VVNEELGYTFSPNVKSFVEALELVIRDGPK 427
+ NE+ GY + +V ++A + V ++ K
Sbjct: 137 I-NEKTGYLVNADVNEIIDAXKKVSKNPDK 165
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 300 KGHPLLYEAFSSITRDHPGVYLLVAGTGPWGR---RYAELGQNVKVLGALEAHQLSEFYN 356
KG +L A + P V +L+ G G + +L +++ LG ++ +
Sbjct: 222 KGMAVLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMR 281
Query: 357 ALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELG 404
+ DV+ P L + + L+EAM G V+ + + R V+ + + G
Sbjct: 282 SADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAF-RRVLADGDAG 328
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 80/395 (20%), Positives = 162/395 (41%), Gaps = 43/395 (10%)
Query: 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVH 139
+KL + +P + GG + L LA RGHEIH T+ + N V+ N++ H
Sbjct: 34 MKLKIGITCYP---SVGGSGVVGTELGKQLAERGHEIHFITSGLPFRL-NKVYP-NIYFH 88
Query: 140 FAANDHGSVNLNNDGAFDYVHTESVSLPHWRAKMVPNVAVTWHGIWYEVMHS-------K 192
V +N F Y + ++L A++ + + Y + H+ +
Sbjct: 89 -------EVTVNQYSVFQYPPYD-LALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQ 140
Query: 193 LFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQL--P 250
+ GE L G+ + + P L + IRF Q ++ + ++ + ++L P
Sbjct: 141 MIGERIKIVT-TLHGTDITVLGSDPSLNNLIRF--GIEQSDVVTAVSHSLINETHELVKP 197
Query: 251 QRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAG----RLVRDKGHPLLY 306
+++ + N +DE V+ + ++ G+ + +++ ++ + V+D +
Sbjct: 198 NKDIQTVYNFIDER--VYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQD-----VV 250
Query: 307 EAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNV----KVLGALEAHQLSEFYNALDVFV 362
+AF+ I + LLV G GP +L +N+ +VL + ++E D+ +
Sbjct: 251 QAFAKIVTEVDAKLLLV-GDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLML 309
Query: 363 NPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVI 422
+ + L L+EAM CG + I V+ + + GY + V + +
Sbjct: 310 LLS-EKESFGLVLLEAMACGVPCIGTRVGGIPE-VIQHGDTGYLCEVGDTTGVADQAIQL 367
Query: 423 RDGPKVLQRKGLACKEHALSMFTATKMASAYERFF 457
++ + G +E F + K+ S YE +
Sbjct: 368 LKDEELHRNMGERARESVYEQFRSEKIVSQYETIY 402
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 80/395 (20%), Positives = 162/395 (41%), Gaps = 43/395 (10%)
Query: 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVH 139
+KL + +P + GG + L LA RGHEIH T+ + N V+ N++ H
Sbjct: 14 MKLKIGITCYP---SVGGSGVVGTELGKQLAERGHEIHFITSGLPFRL-NKVYP-NIYFH 68
Query: 140 FAANDHGSVNLNNDGAFDYVHTESVSLPHWRAKMVPNVAVTWHGIWYEVMHS-------K 192
V +N F Y + ++L A++ + + Y + H+ +
Sbjct: 69 -------EVTVNQYSVFQYPPYD-LALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQ 120
Query: 193 LFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQL--P 250
+ GE L G+ + + P L + IRF Q ++ + ++ + ++L P
Sbjct: 121 MIGERIKIVT-TLHGTDITVLGSDPSLNNLIRF--GIEQSDVVTAVSHSLINETHELVKP 177
Query: 251 QRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAG----RLVRDKGHPLLY 306
+++ + N +DE V+ + ++ G+ + +++ ++ + V+D +
Sbjct: 178 NKDIQTVYNFIDER--VYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQD-----VV 230
Query: 307 EAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNV----KVLGALEAHQLSEFYNALDVFV 362
+AF+ I + LLV G GP +L +N+ +VL + ++E D+ +
Sbjct: 231 QAFAKIVTEVDAKLLLV-GDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLML 289
Query: 363 NPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVI 422
+ + L L+EAM CG + I V+ + + GY + V + +
Sbjct: 290 LLS-EKESFGLVLLEAMACGVPCIGTRVGGIPE-VIQHGDTGYLCEVGDTTGVADQAIQL 347
Query: 423 RDGPKVLQRKGLACKEHALSMFTATKMASAYERFF 457
++ + G +E F + K+ S YE +
Sbjct: 348 LKDEELHRNMGERARESVYEQFRSEKIVSQYETIY 382
>pdb|2P5I|A Chain A, Crystal Structure Of Protein Bh3822 From Bacillus
Halodurans, A Member Of The BiotinLIPOATE AB PROTEIN
Ligase Family
Length = 288
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 232 HICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVH---DPEAGVRFPEKLGVPANVSL 288
++C+S S AE I + V TKFV+ PE E LG P NVS
Sbjct: 180 YLCVSGSGAERAKXIRTFYDKAV-----AGQPTKFVYPRIKPETXASLSELLGQPHNVSD 234
Query: 289 VMGVAGRLVRDKGHPLLYEAFSS 311
V+ A ++ G LL E+ S+
Sbjct: 235 VLLKALXTLQQHGASLLTESLSA 257
>pdb|2A22|A Chain A, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
pdb|2A22|B Chain B, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
Length = 215
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 214 EAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAG 273
+ +P E+ N +C N ++ V++ + +NV+++ +D F DPE+
Sbjct: 41 KELPSNFRELLATDKINYVLCTGNVCSQEYVEMLKNITKNVYIVSGDLDSAIFNPDPESN 100
Query: 274 VRFPE 278
FPE
Sbjct: 101 GVFPE 105
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
Query: 337 GQNVKVLGAL-----EAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVL 386
G+ ++V+G + E+ QL + YNA+ + RPQG LT+ A+H G V+
Sbjct: 4 GRIIQVMGPVVDIQFESGQLPDIYNAITIE-----RPQGGTLTVEAAVHLGDNVV 53
>pdb|2R4R|H Chain H, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|2R4S|H Chain H, Crystal Structure Of The Human Beta2 Adrenoceptor
pdb|3KJ6|H Chain H, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 217
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 296 LVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGR 331
L DK Y SS+T + VY V G G WG+
Sbjct: 70 LTADKSSSTAYMQLSSLTSEDSAVYFCVRGFGYWGQ 105
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 30/150 (20%)
Query: 198 FSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVI 257
F +GV G+ AM ++ +++ +++QH+C N LVK + P V +
Sbjct: 17 FQMMDGVEGGT------AMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSL 70
Query: 258 LNGVDE----------TKFVHDPEAGV--RFPEKLGVPANVSLVMGVAGRLVRDKGHPL- 304
+ D+ + DPE G K G+PA S L+ D+ H L
Sbjct: 71 VRRFDQPQKYKPFVSRCTVIGDPEIGSLREVNVKSGLPATTST---ERLELLDDEEHILG 127
Query: 305 --------LYEAFSSITRDHPGVYLLVAGT 326
+ +SSI HP + AGT
Sbjct: 128 IKIIGGDHRLKNYSSILTVHPEIIEGRAGT 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,061,517
Number of Sequences: 62578
Number of extensions: 613045
Number of successful extensions: 1275
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1267
Number of HSP's gapped (non-prelim): 15
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)