Query 044542
Match_columns 465
No_of_seqs 377 out of 1938
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02871 UDP-sulfoquinovose:DA 100.0 2.6E-44 5.6E-49 357.4 40.3 354 77-461 56-436 (465)
2 PRK10307 putative glycosyl tra 100.0 3E-44 6.5E-49 352.8 36.9 361 80-464 1-412 (412)
3 cd03796 GT1_PIG-A_like This fa 100.0 6.9E-44 1.5E-48 348.3 37.0 344 81-464 1-372 (398)
4 PRK00654 glgA glycogen synthas 100.0 5.3E-44 1.1E-48 354.5 32.3 369 80-462 1-465 (466)
5 PRK15427 colanic acid biosynth 100.0 1.9E-43 4E-48 343.8 34.5 339 80-460 1-406 (406)
6 PLN02316 synthase/transferase 100.0 4.9E-43 1.1E-47 359.8 38.1 349 77-461 585-1035(1036)
7 TIGR03088 stp2 sugar transfera 100.0 2.1E-43 4.6E-48 342.9 33.3 350 80-461 2-374 (374)
8 TIGR03449 mycothiol_MshA UDP-N 100.0 8.1E-43 1.8E-47 342.4 34.0 344 95-462 19-404 (405)
9 PLN02939 transferase, transfer 100.0 1.7E-42 3.6E-47 349.4 36.5 377 76-463 478-970 (977)
10 TIGR02472 sucr_P_syn_N sucrose 100.0 1.7E-42 3.7E-47 341.6 34.5 354 92-457 22-438 (439)
11 PRK14099 glycogen synthase; Pr 100.0 3.2E-42 7E-47 340.3 33.2 372 77-463 1-482 (485)
12 PRK15484 lipopolysaccharide 1, 100.0 7.2E-42 1.6E-46 330.8 34.6 334 81-461 4-379 (380)
13 TIGR02095 glgA glycogen/starch 100.0 2.5E-42 5.5E-47 344.1 31.9 368 80-460 1-473 (473)
14 PRK14098 glycogen synthase; Pr 100.0 1.2E-41 2.5E-46 336.7 32.6 371 77-462 3-488 (489)
15 TIGR02149 glgA_Coryne glycogen 100.0 3.8E-41 8.2E-46 328.9 33.8 349 80-461 1-388 (388)
16 cd04962 GT1_like_5 This family 100.0 3.4E-41 7.4E-46 327.3 32.3 340 80-460 1-371 (371)
17 cd03805 GT1_ALG2_like This fam 100.0 1.2E-40 2.6E-45 325.9 35.6 348 80-453 1-392 (392)
18 cd03818 GT1_ExpC_like This fam 100.0 1.1E-40 2.3E-45 325.8 34.4 347 81-455 1-396 (396)
19 TIGR02468 sucrsPsyn_pln sucros 100.0 8.6E-40 1.9E-44 334.9 37.6 373 76-462 166-673 (1050)
20 PRK10125 putative glycosyl tra 100.0 9.5E-40 2.1E-44 316.4 33.1 353 80-460 1-405 (405)
21 cd03825 GT1_wcfI_like This fam 100.0 1.8E-39 3.8E-44 314.4 34.2 347 80-460 1-365 (365)
22 PRK15179 Vi polysaccharide bio 100.0 7.8E-40 1.7E-44 330.1 32.4 350 78-458 279-692 (694)
23 cd03800 GT1_Sucrose_synthase T 100.0 2.1E-39 4.5E-44 317.8 34.2 341 93-454 18-397 (398)
24 TIGR03087 stp1 sugar transfera 100.0 3.3E-39 7.1E-44 315.3 31.9 352 82-458 1-395 (397)
25 cd03791 GT1_Glycogen_synthase_ 100.0 2E-39 4.2E-44 324.8 30.8 368 81-459 1-476 (476)
26 cd04951 GT1_WbdM_like This fam 100.0 4.2E-39 9E-44 311.2 31.7 336 81-458 1-359 (360)
27 TIGR02470 sucr_synth sucrose s 100.0 2.2E-38 4.8E-43 318.8 37.8 365 78-457 254-745 (784)
28 cd03813 GT1_like_3 This family 100.0 1E-38 2.3E-43 317.4 34.5 352 81-458 1-475 (475)
29 cd05844 GT1_like_7 Glycosyltra 100.0 4.7E-39 1E-43 311.8 31.2 334 81-456 1-367 (367)
30 PRK15490 Vi polysaccharide bio 100.0 1.1E-38 2.3E-43 307.0 32.1 226 227-459 338-575 (578)
31 cd03795 GT1_like_4 This family 100.0 1.9E-38 4E-43 306.3 34.1 332 81-450 1-357 (357)
32 cd03814 GT1_like_2 This family 100.0 1.6E-38 3.5E-43 307.2 33.1 345 81-458 1-364 (364)
33 cd03792 GT1_Trehalose_phosphor 100.0 4.9E-39 1.1E-43 311.7 28.4 338 81-460 1-372 (372)
34 cd03819 GT1_WavL_like This fam 100.0 7.7E-39 1.7E-43 308.8 29.5 318 94-449 8-355 (355)
35 cd03807 GT1_WbnK_like This fam 100.0 1.9E-38 4E-43 306.3 31.5 342 81-458 1-365 (365)
36 cd03821 GT1_Bme6_like This fam 100.0 4.2E-38 9.1E-43 305.0 33.9 345 81-454 1-374 (375)
37 cd03802 GT1_AviGT4_like This f 100.0 3E-38 6.5E-43 302.2 31.1 315 80-458 1-335 (335)
38 cd04955 GT1_like_6 This family 100.0 1.1E-37 2.4E-42 301.7 35.3 337 81-458 1-363 (363)
39 cd03809 GT1_mtfB_like This fam 100.0 2.9E-38 6.4E-43 305.6 29.4 345 81-454 1-364 (365)
40 cd03801 GT1_YqgM_like This fam 100.0 1.4E-37 3E-42 300.3 34.0 350 81-458 1-374 (374)
41 PLN02949 transferase, transfer 100.0 4.4E-37 9.5E-42 300.6 37.6 362 79-463 33-460 (463)
42 cd03799 GT1_amsK_like This is 100.0 4.4E-38 9.4E-43 303.5 29.5 327 81-452 1-354 (355)
43 cd03817 GT1_UGDG_like This fam 100.0 4.2E-37 9.1E-42 298.0 36.1 349 81-459 1-373 (374)
44 cd03816 GT1_ALG1_like This fam 100.0 1.9E-37 4.1E-42 303.3 33.4 346 79-452 3-409 (415)
45 cd03822 GT1_ecORF704_like This 100.0 5E-37 1.1E-41 297.1 35.7 335 81-458 1-366 (366)
46 cd03823 GT1_ExpE7_like This fa 100.0 4.6E-37 1E-41 296.3 33.7 326 81-458 1-358 (359)
47 KOG1111 N-acetylglucosaminyltr 100.0 1.8E-38 4E-43 280.5 21.3 343 80-464 1-371 (426)
48 cd03794 GT1_wbuB_like This fam 100.0 6.7E-37 1.4E-41 298.3 34.3 350 81-454 1-394 (394)
49 PRK09922 UDP-D-galactose:(gluc 100.0 1.8E-37 4E-42 298.8 28.6 329 80-462 1-358 (359)
50 cd03806 GT1_ALG11_like This fa 100.0 1.8E-36 3.9E-41 296.0 34.5 349 81-451 2-418 (419)
51 PLN00142 sucrose synthase 100.0 5.1E-37 1.1E-41 308.8 30.9 364 79-457 279-768 (815)
52 PLN02846 digalactosyldiacylgly 100.0 4.2E-36 9.2E-41 288.8 35.5 337 78-458 3-390 (462)
53 cd03812 GT1_CapH_like This fam 100.0 3.4E-37 7.4E-42 297.7 27.7 328 81-443 1-349 (358)
54 cd03820 GT1_amsD_like This fam 100.0 6.5E-36 1.4E-40 286.4 35.5 324 81-454 1-347 (348)
55 cd03798 GT1_wlbH_like This fam 100.0 3.4E-36 7.3E-41 291.3 33.7 344 82-460 1-377 (377)
56 cd03808 GT1_cap1E_like This fa 100.0 3.4E-35 7.3E-40 282.7 34.7 331 81-454 1-358 (359)
57 cd03811 GT1_WabH_like This fam 100.0 5.4E-35 1.2E-39 280.4 30.7 327 81-445 1-352 (353)
58 cd04946 GT1_AmsK_like This fam 100.0 2.9E-34 6.3E-39 280.1 34.1 216 224-454 179-406 (407)
59 cd03804 GT1_wbaZ_like This fam 100.0 1.3E-34 2.9E-39 278.7 30.1 332 81-453 1-350 (351)
60 PHA01630 putative group 1 glyc 100.0 2.8E-33 6.1E-38 263.1 32.0 290 99-459 13-330 (331)
61 TIGR02918 accessory Sec system 100.0 4.6E-33 9.9E-38 274.9 30.2 215 225-460 267-500 (500)
62 PHA01633 putative glycosyl tra 100.0 2.5E-32 5.4E-37 253.1 31.3 306 80-455 1-335 (335)
63 PLN02275 transferase, transfer 100.0 1.7E-32 3.6E-37 264.8 31.0 298 96-422 15-371 (371)
64 PLN02501 digalactosyldiacylgly 100.0 4.3E-31 9.3E-36 257.1 33.6 336 80-457 323-707 (794)
65 cd04949 GT1_gtfA_like This fam 100.0 1.7E-30 3.7E-35 252.2 24.7 263 154-453 98-372 (372)
66 COG0297 GlgA Glycogen synthase 100.0 5.4E-28 1.2E-32 232.7 28.9 373 80-463 1-481 (487)
67 PRK00726 murG undecaprenyldiph 100.0 5.3E-28 1.1E-32 233.1 27.6 316 80-458 2-356 (357)
68 PRK05749 3-deoxy-D-manno-octul 100.0 8.2E-27 1.8E-31 229.9 26.2 340 81-463 51-423 (425)
69 cd03793 GT1_Glycogen_synthase_ 100.0 2.7E-26 5.9E-31 221.6 26.6 299 153-462 146-589 (590)
70 cd04950 GT1_like_1 Glycosyltra 100.0 1.1E-25 2.4E-30 217.6 30.7 320 96-459 16-371 (373)
71 PRK13609 diacylglycerol glucos 100.0 3.4E-27 7.3E-32 229.3 19.1 324 78-459 3-371 (380)
72 cd03788 GT1_TPS Trehalose-6-Ph 100.0 3.4E-27 7.3E-32 232.5 19.2 272 155-456 131-458 (460)
73 cd03785 GT1_MurG MurG is an N- 99.9 7.5E-26 1.6E-30 217.8 27.0 306 81-451 1-349 (350)
74 TIGR02400 trehalose_OtsA alpha 99.9 3.1E-26 6.7E-31 223.6 22.9 271 155-457 127-454 (456)
75 PRK13608 diacylglycerol glucos 99.9 1.6E-26 3.4E-31 224.3 19.8 330 77-462 3-374 (391)
76 KOG0853 Glycosyltransferase [C 99.9 3.1E-25 6.7E-30 210.1 27.4 364 75-461 30-469 (495)
77 PLN02605 monogalactosyldiacylg 99.9 4.2E-26 9.1E-31 221.1 20.5 221 224-458 146-380 (382)
78 TIGR01133 murG undecaprenyldip 99.9 6.9E-25 1.5E-29 210.9 26.4 306 80-451 1-346 (348)
79 KOG1387 Glycosyltransferase [C 99.9 1E-23 2.3E-28 185.9 29.6 358 81-463 45-462 (465)
80 PF00534 Glycos_transf_1: Glyc 99.9 1.9E-25 4.2E-30 192.1 13.9 159 277-439 6-172 (172)
81 PLN03063 alpha,alpha-trehalose 99.9 9.4E-24 2E-28 218.6 22.1 275 157-462 149-480 (797)
82 PRK09814 beta-1,6-galactofuran 99.9 1.3E-22 2.8E-27 192.7 25.4 281 94-442 13-315 (333)
83 cd01635 Glycosyltransferase_GT 99.9 1.3E-22 2.8E-27 182.6 21.0 216 82-407 1-229 (229)
84 TIGR00236 wecB UDP-N-acetylglu 99.9 1.3E-22 2.9E-27 195.9 18.2 332 80-455 1-363 (365)
85 PRK14501 putative bifunctional 99.9 9.5E-23 2E-27 211.9 18.3 273 156-461 134-464 (726)
86 PRK00025 lpxB lipid-A-disaccha 99.9 1E-21 2.3E-26 191.0 17.0 307 79-442 1-358 (380)
87 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 1.3E-20 2.8E-25 182.3 21.6 306 81-432 1-344 (363)
88 TIGR02398 gluc_glyc_Psyn gluco 99.9 6.3E-20 1.4E-24 178.1 24.2 196 254-459 250-482 (487)
89 COG0438 RfaG Glycosyltransfera 99.8 5.2E-19 1.1E-23 169.6 24.9 221 228-462 150-379 (381)
90 KOG2941 Beta-1,4-mannosyltrans 99.8 1.6E-17 3.6E-22 147.2 28.4 334 99-455 26-437 (444)
91 PF13692 Glyco_trans_1_4: Glyc 99.8 2.5E-19 5.5E-24 147.3 11.0 131 288-424 3-135 (135)
92 PLN03064 alpha,alpha-trehalose 99.8 1.2E-17 2.5E-22 172.5 22.3 229 224-461 283-563 (934)
93 TIGR03713 acc_sec_asp1 accesso 99.8 6.8E-17 1.5E-21 159.9 21.8 210 224-457 268-519 (519)
94 TIGR02094 more_P_ylases alpha- 99.7 3.5E-15 7.7E-20 149.5 23.3 231 224-457 258-598 (601)
95 TIGR00215 lpxB lipid-A-disacch 99.7 1E-14 2.2E-19 140.9 21.6 306 81-439 7-365 (385)
96 PF13439 Glyco_transf_4: Glyco 99.6 7.8E-15 1.7E-19 126.3 15.0 159 82-267 1-177 (177)
97 COG0707 MurG UDP-N-acetylgluco 99.6 9.9E-13 2.2E-17 123.9 24.5 306 94-456 9-354 (357)
98 PF05693 Glycogen_syn: Glycoge 99.6 3.6E-13 7.8E-18 130.3 21.4 240 217-461 210-583 (633)
99 PRK12446 undecaprenyldiphospho 99.6 3.6E-12 7.7E-17 121.6 26.4 281 94-429 10-329 (352)
100 PRK10117 trehalose-6-phosphate 99.5 2.6E-12 5.6E-17 123.9 23.8 274 156-461 124-455 (474)
101 TIGR02919 accessory Sec system 99.5 1E-12 2.2E-17 127.2 19.2 185 227-440 238-426 (438)
102 PF13524 Glyco_trans_1_2: Glyc 99.5 1E-13 2.2E-18 105.3 9.5 92 360-455 1-92 (92)
103 PF00982 Glyco_transf_20: Glyc 99.5 3.7E-12 8.1E-17 124.5 21.3 275 154-458 140-473 (474)
104 COG1519 KdtA 3-deoxy-D-manno-o 99.4 9.9E-11 2.1E-15 108.9 23.6 320 97-458 60-416 (419)
105 PF13579 Glyco_trans_4_4: Glyc 99.4 2E-12 4.3E-17 109.2 11.0 141 96-260 1-160 (160)
106 cd04299 GT1_Glycogen_Phosphory 99.4 7E-11 1.5E-15 121.0 23.6 230 224-457 347-687 (778)
107 COG0380 OtsA Trehalose-6-phosp 99.4 7.4E-11 1.6E-15 113.3 21.7 273 156-459 148-479 (486)
108 PF13528 Glyco_trans_1_3: Glyc 99.4 5.1E-11 1.1E-15 113.0 18.7 280 80-421 1-317 (318)
109 PLN02205 alpha,alpha-trehalose 99.4 7.3E-11 1.6E-15 123.2 21.2 274 157-460 203-552 (854)
110 TIGR03568 NeuC_NnaA UDP-N-acet 99.3 2.4E-10 5.2E-15 109.6 22.6 323 80-456 1-364 (365)
111 TIGR03492 conserved hypothetic 99.3 4.2E-10 9.2E-15 109.0 24.1 207 226-455 158-394 (396)
112 COG3914 Spy Predicted O-linked 99.3 2.5E-10 5.4E-15 109.1 19.5 337 74-463 254-617 (620)
113 COG0381 WecB UDP-N-acetylgluco 99.3 1E-09 2.2E-14 101.4 22.1 338 77-458 1-373 (383)
114 TIGR03590 PseG pseudaminic aci 99.2 1.2E-09 2.5E-14 100.9 18.0 248 81-390 1-268 (279)
115 COG4641 Uncharacterized protei 99.2 3.4E-09 7.4E-14 97.1 18.9 327 94-460 12-362 (373)
116 PF09314 DUF1972: Domain of un 99.2 2.2E-09 4.7E-14 90.6 16.1 157 81-262 3-185 (185)
117 PF13844 Glyco_transf_41: Glyc 99.2 1.1E-09 2.4E-14 105.3 15.9 181 274-460 273-467 (468)
118 cd03784 GT1_Gtf_like This fami 99.2 3.5E-09 7.5E-14 103.9 20.0 151 285-453 238-398 (401)
119 COG0763 LpxB Lipid A disacchar 99.1 3.2E-09 7E-14 97.9 16.3 330 79-456 1-378 (381)
120 PF04007 DUF354: Protein of un 99.1 1.6E-08 3.4E-13 94.4 18.6 283 80-424 1-310 (335)
121 TIGR00661 MJ1255 conserved hyp 99.0 1.8E-07 3.8E-12 88.7 23.6 121 286-424 188-314 (321)
122 PF02350 Epimerase_2: UDP-N-ac 98.9 5.7E-09 1.2E-13 99.1 11.0 211 227-457 121-345 (346)
123 PHA03392 egt ecdysteroid UDP-g 98.9 3.7E-07 8E-12 91.2 23.7 135 288-438 298-445 (507)
124 COG1819 Glycosyl transferases, 98.9 7.6E-08 1.7E-12 93.4 17.7 163 282-459 233-401 (406)
125 PF02684 LpxB: Lipid-A-disacch 98.9 1.5E-07 3.3E-12 89.1 19.0 188 227-431 132-346 (373)
126 TIGR01426 MGT glycosyltransfer 98.7 4.5E-07 9.7E-12 88.6 15.5 160 285-457 224-390 (392)
127 PF04464 Glyphos_transf: CDP-G 98.6 1.3E-06 2.7E-11 84.7 16.7 193 224-429 130-340 (369)
128 PRK01021 lpxB lipid-A-disaccha 98.6 5.9E-06 1.3E-10 81.9 21.2 303 80-439 227-585 (608)
129 PRK02797 4-alpha-L-fucosyltran 98.6 1.1E-05 2.4E-10 72.7 19.7 211 224-464 94-321 (322)
130 PRK10017 colanic acid biosynth 98.6 9.2E-05 2E-09 72.1 27.8 196 224-430 172-397 (426)
131 COG4671 Predicted glycosyl tra 98.5 2E-05 4.4E-10 71.7 20.2 303 79-424 9-365 (400)
132 PF13477 Glyco_trans_4_2: Glyc 98.5 1.6E-06 3.5E-11 71.2 11.9 92 81-184 1-109 (139)
133 PF08323 Glyco_transf_5: Starc 98.5 2E-07 4.4E-12 84.2 5.9 43 81-123 1-43 (245)
134 PLN02448 UDP-glycosyltransfera 98.5 0.00039 8.5E-09 69.1 29.6 127 286-424 274-415 (459)
135 COG1817 Uncharacterized protei 98.5 3.3E-05 7.2E-10 69.1 19.1 283 80-424 1-314 (346)
136 PLN02208 glycosyltransferase f 98.4 0.0011 2.3E-08 65.3 30.1 224 225-457 190-437 (442)
137 COG3980 spsG Spore coat polysa 98.4 1.8E-05 3.8E-10 69.8 14.3 286 80-434 1-302 (318)
138 PF07429 Glyco_transf_56: 4-al 98.3 0.00016 3.6E-09 66.3 21.0 261 152-461 75-357 (360)
139 KOG3742 Glycogen synthase [Car 98.3 5.6E-06 1.2E-10 77.1 11.4 106 349-457 492-610 (692)
140 PLN03007 UDP-glucosyltransfera 98.3 0.0057 1.2E-07 61.3 33.3 116 337-458 344-479 (482)
141 PLN02410 UDP-glucoronosyl/UDP- 98.3 0.0048 1E-07 60.9 30.8 131 286-424 264-410 (451)
142 PRK14089 ipid-A-disaccharide s 98.2 2.5E-05 5.3E-10 73.8 12.1 131 226-388 125-260 (347)
143 PLN02210 UDP-glucosyl transfer 98.1 0.013 2.9E-07 58.0 32.4 161 286-455 269-451 (456)
144 PLN00414 glycosyltransferase f 97.9 0.025 5.5E-07 55.8 32.3 207 224-439 188-417 (446)
145 KOG4626 O-linked N-acetylgluco 97.9 0.00016 3.6E-09 70.4 13.1 181 275-461 748-942 (966)
146 PF11997 DUF3492: Domain of un 97.9 0.00039 8.4E-09 63.4 14.9 163 80-251 1-267 (268)
147 PF04101 Glyco_tran_28_C: Glyc 97.8 7.8E-07 1.7E-11 75.6 -5.4 107 321-435 35-154 (167)
148 PLN02173 UDP-glucosyl transfer 97.6 0.089 1.9E-06 51.9 32.9 130 286-424 264-408 (449)
149 TIGR02195 heptsyl_trn_II lipop 97.5 0.0043 9.4E-08 59.2 15.8 105 276-388 164-276 (334)
150 PLN02207 UDP-glycosyltransfera 97.5 0.021 4.5E-07 56.6 20.2 225 224-459 207-465 (468)
151 COG0859 RfaF ADP-heptose:LPS h 97.5 0.0074 1.6E-07 57.5 16.6 96 286-389 175-277 (334)
152 PLN02863 UDP-glucoronosyl/UDP- 97.4 0.16 3.4E-06 50.8 32.4 114 338-459 343-471 (477)
153 PF00201 UDPGT: UDP-glucoronos 97.4 0.00089 1.9E-08 67.8 9.8 130 285-429 275-413 (500)
154 PF12000 Glyco_trans_4_3: Gkyc 97.3 0.0018 3.9E-08 54.2 8.9 40 224-266 131-170 (171)
155 PLN02670 transferase, transfer 97.2 0.014 3.1E-07 57.8 15.7 117 339-461 340-467 (472)
156 PF06258 Mito_fiss_Elm1: Mitoc 97.2 0.049 1.1E-06 50.9 18.3 235 97-392 2-259 (311)
157 PLN02554 UDP-glycosyltransfera 97.2 0.035 7.6E-07 55.6 18.4 113 336-454 340-473 (481)
158 PRK10916 ADP-heptose:LPS hepto 97.1 0.021 4.5E-07 54.8 15.6 102 279-388 173-286 (348)
159 PLN02764 glycosyltransferase f 97.1 0.11 2.4E-06 51.3 20.6 230 224-462 195-448 (453)
160 PLN02555 limonoid glucosyltran 97.1 0.14 2.9E-06 51.2 21.5 119 334-458 333-468 (480)
161 COG2327 WcaK Polysaccharide py 97.1 0.27 5.9E-06 46.7 26.0 306 80-431 1-357 (385)
162 PLN02562 UDP-glycosyltransfera 97.1 0.019 4.1E-07 56.9 15.4 132 288-431 275-419 (448)
163 COG3660 Predicted nucleoside-d 97.1 0.16 3.4E-06 45.0 18.6 254 80-393 1-276 (329)
164 PF04230 PS_pyruv_trans: Polys 97.1 0.12 2.6E-06 47.5 19.8 152 224-390 123-284 (286)
165 PLN02152 indole-3-acetate beta 97.0 0.02 4.2E-07 56.6 14.1 159 286-454 261-451 (455)
166 PLN00164 glucosyltransferase; 97.0 0.25 5.4E-06 49.5 22.0 81 338-424 339-431 (480)
167 PRK10422 lipopolysaccharide co 97.0 0.052 1.1E-06 52.2 16.8 95 287-389 184-288 (352)
168 PLN03004 UDP-glycosyltransfera 96.9 0.013 2.8E-07 57.8 12.4 80 338-424 334-424 (451)
169 PLN02167 UDP-glycosyltransfera 96.9 0.053 1.1E-06 54.2 16.6 156 287-455 281-468 (475)
170 PF11440 AGT: DNA alpha-glucos 96.9 0.064 1.4E-06 47.7 14.7 292 96-424 1-353 (355)
171 COG0058 GlgP Glucan phosphoryl 96.7 0.0097 2.1E-07 60.9 10.0 124 287-411 487-632 (750)
172 KOG1050 Trehalose-6-phosphate 96.7 0.021 4.5E-07 59.1 12.4 194 253-455 240-470 (732)
173 TIGR03609 S_layer_CsaB polysac 96.7 0.14 3.1E-06 47.9 17.1 146 224-389 123-276 (298)
174 PF10933 DUF2827: Protein of u 96.6 0.64 1.4E-05 43.5 20.4 306 94-446 16-350 (364)
175 PF01075 Glyco_transf_9: Glyco 95.9 0.067 1.5E-06 48.5 10.0 96 285-388 104-208 (247)
176 PRK14986 glycogen phosphorylas 95.9 0.045 9.7E-07 56.9 9.5 129 288-417 544-703 (815)
177 PRK10964 ADP-heptose:LPS hepto 95.9 0.27 5.9E-06 46.5 14.3 95 287-389 179-279 (322)
178 PF00343 Phosphorylase: Carboh 95.8 0.45 9.8E-06 49.0 16.1 188 226-415 329-602 (713)
179 PLN02992 coniferyl-alcohol glu 95.7 0.39 8.4E-06 47.9 15.1 97 338-440 338-448 (481)
180 TIGR02193 heptsyl_trn_I lipopo 95.7 0.17 3.7E-06 47.9 12.3 125 285-421 178-318 (319)
181 PF15024 Glyco_transf_18: Glyc 95.6 0.12 2.6E-06 51.2 10.8 148 293-459 283-455 (559)
182 PLN03015 UDP-glucosyl transfer 95.6 2.3 4.9E-05 42.4 19.8 109 340-454 337-463 (470)
183 TIGR00715 precor6x_red precorr 95.6 1.7 3.8E-05 39.4 18.8 117 289-422 132-255 (256)
184 PF12038 DUF3524: Domain of un 95.6 0.24 5.2E-06 40.9 10.6 129 80-245 1-136 (168)
185 cd03789 GT1_LPS_heptosyltransf 95.4 0.1 2.2E-06 48.3 9.3 95 288-390 123-225 (279)
186 cd04300 GT1_Glycogen_Phosphory 95.2 0.1 2.2E-06 54.4 9.3 128 288-416 531-689 (797)
187 PLN02534 UDP-glycosyltransfera 95.1 1.3 2.8E-05 44.4 16.5 114 338-457 344-484 (491)
188 PF05159 Capsule_synth: Capsul 95.0 0.32 7E-06 44.7 11.2 94 301-409 138-238 (269)
189 PF01975 SurE: Survival protei 94.9 0.097 2.1E-06 45.2 7.0 43 80-129 1-43 (196)
190 COG1887 TagB Putative glycosyl 94.6 1.5 3.2E-05 42.5 15.0 188 226-424 146-353 (388)
191 PRK14985 maltodextrin phosphor 94.4 0.077 1.7E-06 55.0 5.9 129 288-417 530-689 (798)
192 TIGR02093 P_ylase glycogen/sta 94.4 0.15 3.3E-06 53.0 7.9 128 288-417 528-687 (794)
193 PF03016 Exostosin: Exostosin 93.4 0.43 9.4E-06 44.6 8.8 70 349-419 228-300 (302)
194 KOG1192 UDP-glucuronosyl and U 93.3 2.2 4.9E-05 43.0 14.4 133 288-430 279-427 (496)
195 PF06925 MGDG_synth: Monogalac 92.6 0.3 6.5E-06 41.3 5.7 36 224-260 133-168 (169)
196 PF10093 DUF2331: Uncharacteri 92.5 0.57 1.2E-05 44.4 7.8 105 274-390 169-290 (374)
197 PF04413 Glycos_transf_N: 3-De 92.2 0.24 5.3E-06 42.5 4.8 148 81-259 22-179 (186)
198 COG4394 Uncharacterized protei 91.9 1.6 3.4E-05 39.3 9.3 112 338-460 238-368 (370)
199 PLN02166 dTDP-glucose 4,6-dehy 91.6 1.2 2.6E-05 44.1 9.5 44 69-122 110-153 (436)
200 PF00862 Sucrose_synth: Sucros 91.2 2.4 5.2E-05 41.7 10.6 149 81-241 274-481 (550)
201 TIGR02201 heptsyl_trn_III lipo 91.0 1.7 3.7E-05 41.5 9.8 94 287-388 182-285 (344)
202 PLN02206 UDP-glucuronate decar 90.1 1.9 4.1E-05 42.8 9.3 42 70-121 110-151 (442)
203 PRK13932 stationary phase surv 88.9 1.8 3.9E-05 39.0 7.4 43 78-128 4-46 (257)
204 COG0496 SurE Predicted acid ph 88.5 1.7 3.6E-05 38.9 6.8 41 80-128 1-41 (252)
205 TIGR03837 efp_adjacent_2 conse 88.5 2 4.4E-05 40.5 7.6 83 298-390 191-288 (371)
206 PF10087 DUF2325: Uncharacteri 87.0 1.1 2.4E-05 33.8 4.2 45 350-394 41-87 (97)
207 TIGR00087 surE 5'/3'-nucleotid 84.0 4.7 0.0001 36.2 7.4 41 80-128 1-41 (244)
208 PF02951 GSH-S_N: Prokaryotic 83.7 1.3 2.9E-05 34.6 3.3 43 80-125 1-43 (119)
209 PF03033 Glyco_transf_28: Glyc 82.9 1.9 4.2E-05 34.7 4.3 29 95-123 8-36 (139)
210 PRK00346 surE 5'(3')-nucleotid 82.7 6 0.00013 35.6 7.5 41 80-128 1-41 (250)
211 PF03358 FMN_red: NADPH-depend 82.7 4.4 9.6E-05 33.3 6.4 41 80-123 1-41 (152)
212 KOG3349 Predicted glycosyltran 80.4 14 0.00031 30.0 7.9 93 288-390 5-108 (170)
213 COG5017 Uncharacterized conser 78.8 18 0.00039 28.9 7.9 62 321-392 34-95 (161)
214 PRK00207 sulfur transfer compl 77.6 5.5 0.00012 31.8 5.0 42 80-124 1-43 (128)
215 PF12996 DUF3880: DUF based on 77.3 6.9 0.00015 28.1 5.1 45 224-271 14-58 (79)
216 KOG1021 Acetylglucosaminyltran 76.8 16 0.00035 36.5 9.1 93 349-445 335-431 (464)
217 COG2910 Putative NADH-flavin r 76.3 4.6 9.9E-05 34.2 4.3 37 80-126 1-37 (211)
218 PRK09739 hypothetical protein; 76.2 7.2 0.00016 33.9 5.9 42 78-123 2-44 (199)
219 PF01113 DapB_N: Dihydrodipico 76.0 2.8 6.1E-05 33.3 3.0 45 349-394 59-103 (124)
220 smart00672 CAP10 Putative lipo 75.6 27 0.00058 31.7 9.5 89 370-459 156-248 (256)
221 PRK09271 flavodoxin; Provision 74.9 6.6 0.00014 32.8 5.1 38 80-122 1-38 (160)
222 COG4635 HemG Flavodoxin [Energ 74.1 6.2 0.00013 32.3 4.4 39 80-123 1-39 (175)
223 PRK13935 stationary phase surv 72.6 14 0.00031 33.3 6.9 41 80-128 1-41 (253)
224 PRK13931 stationary phase surv 72.3 19 0.00041 32.8 7.6 43 80-129 1-46 (261)
225 PRK06756 flavodoxin; Provision 72.0 8.8 0.00019 31.4 5.1 38 80-122 2-39 (148)
226 COG4565 CitB Response regulato 72.0 22 0.00048 30.9 7.4 75 349-424 36-120 (224)
227 COG0569 TrkA K+ transport syst 71.7 22 0.00047 31.6 7.8 123 80-247 1-132 (225)
228 cd01020 TroA_b Metal binding p 71.2 50 0.0011 30.1 10.4 106 349-460 44-151 (264)
229 COG1692 Calcineurin-like phosp 71.0 28 0.00062 30.9 8.0 81 289-370 2-94 (266)
230 TIGR03609 S_layer_CsaB polysac 70.9 50 0.0011 30.7 10.6 96 289-391 3-108 (298)
231 PF05686 Glyco_transf_90: Glyc 70.5 13 0.00029 36.2 6.7 89 370-459 225-317 (395)
232 PF14386 DUF4417: Domain of un 70.2 13 0.00028 32.3 5.9 48 281-328 131-178 (200)
233 PF02441 Flavoprotein: Flavopr 69.8 7.5 0.00016 31.0 4.1 37 80-123 1-37 (129)
234 PF08660 Alg14: Oligosaccharid 69.6 8.3 0.00018 32.6 4.5 34 94-127 6-41 (170)
235 PRK06249 2-dehydropantoate 2-r 69.3 5.5 0.00012 37.5 3.8 38 75-123 1-38 (313)
236 PRK08305 spoVFB dipicolinate s 67.5 16 0.00034 31.6 5.7 38 79-124 5-44 (196)
237 COG4370 Uncharacterized protei 66.6 15 0.00033 33.7 5.6 203 227-453 177-407 (412)
238 COG0716 FldA Flavodoxins [Ener 65.5 14 0.00031 30.3 5.1 39 79-122 1-39 (151)
239 PRK05246 glutathione synthetas 62.1 15 0.00031 34.7 5.1 44 80-126 2-45 (316)
240 PRK06703 flavodoxin; Provision 61.4 17 0.00038 29.8 4.9 38 80-122 2-39 (151)
241 PTZ00408 NAD-dependent deacety 61.4 88 0.0019 28.2 9.6 55 338-392 151-209 (242)
242 PRK06015 keto-hydroxyglutarate 60.9 45 0.00098 29.0 7.4 75 305-386 42-121 (201)
243 cd01080 NAD_bind_m-THF_DH_Cycl 60.6 35 0.00077 28.7 6.6 61 306-367 32-97 (168)
244 PF00389 2-Hacid_dh: D-isomer 60.6 57 0.0012 26.0 7.7 92 339-438 20-117 (133)
245 TIGR01754 flav_RNR ribonucleot 59.8 18 0.0004 29.2 4.7 34 80-118 1-34 (140)
246 COG2099 CobK Precorrin-6x redu 59.3 1.4E+02 0.003 27.0 16.4 117 288-423 130-253 (257)
247 COG1553 DsrE Uncharacterized c 59.1 32 0.0007 27.0 5.5 43 80-125 1-44 (126)
248 PRK14138 NAD-dependent deacety 58.7 88 0.0019 28.2 9.2 79 338-420 155-239 (244)
249 TIGR01915 npdG NADPH-dependent 58.7 13 0.00029 32.8 4.0 33 80-122 1-33 (219)
250 PF00551 Formyl_trans_N: Formy 58.3 9.3 0.0002 32.6 2.8 95 80-183 1-109 (181)
251 COG1703 ArgK Putative periplas 58.1 23 0.00051 32.6 5.3 84 78-167 50-155 (323)
252 PLN00016 RNA-binding protein; 57.4 13 0.00028 36.0 4.0 40 79-124 52-91 (378)
253 PRK14569 D-alanyl-alanine synt 56.8 26 0.00055 32.7 5.7 42 78-121 2-43 (296)
254 PRK06849 hypothetical protein; 56.6 17 0.00038 35.3 4.7 36 78-123 3-38 (389)
255 PRK07308 flavodoxin; Validated 56.4 33 0.00072 27.9 5.7 29 94-122 11-39 (146)
256 COG0512 PabA Anthranilate/para 55.9 32 0.0007 29.4 5.5 34 79-122 1-34 (191)
257 TIGR01007 eps_fam capsular exo 55.7 29 0.00062 30.2 5.5 42 79-124 16-57 (204)
258 PF02571 CbiJ: Precorrin-6x re 55.5 1.6E+02 0.0035 26.6 17.6 56 338-394 173-231 (249)
259 PRK03767 NAD(P)H:quinone oxido 54.8 29 0.00063 30.1 5.4 39 80-123 2-41 (200)
260 PF12146 Hydrolase_4: Putative 54.8 72 0.0016 22.8 6.5 41 81-127 17-57 (79)
261 PF02514 CobN-Mg_chel: CobN/Ma 54.7 13 0.00028 41.4 3.7 49 68-117 239-293 (1098)
262 PF01531 Glyco_transf_11: Glyc 54.6 46 0.001 31.0 7.0 63 301-364 189-254 (298)
263 PRK13940 glutamyl-tRNA reducta 54.4 1.5E+02 0.0032 29.2 10.7 67 320-394 207-276 (414)
264 PF13277 YmdB: YmdB-like prote 54.4 39 0.00085 30.3 6.0 81 291-372 1-93 (253)
265 PRK05562 precorrin-2 dehydroge 54.3 1.6E+02 0.0034 26.2 13.2 117 318-442 48-179 (223)
266 PF01081 Aldolase: KDPG and KH 54.1 33 0.00071 29.7 5.4 75 305-386 46-125 (196)
267 PRK13933 stationary phase surv 54.0 19 0.00042 32.5 4.1 40 80-127 1-40 (253)
268 PRK05920 aromatic acid decarbo 53.9 32 0.00068 30.0 5.3 38 80-124 4-41 (204)
269 PRK01372 ddl D-alanine--D-alan 53.7 31 0.00067 32.1 5.8 42 79-122 4-45 (304)
270 PRK11104 hemG protoporphyrinog 53.7 23 0.00049 30.1 4.4 37 80-122 1-37 (177)
271 COG1154 Dxs Deoxyxylulose-5-ph 53.6 54 0.0012 33.4 7.4 83 339-424 534-624 (627)
272 PF02006 DUF137: Protein of un 53.4 64 0.0014 26.9 6.6 87 355-453 87-174 (178)
273 PRK07454 short chain dehydroge 53.2 22 0.00049 31.6 4.6 37 77-122 3-39 (241)
274 TIGR00288 conserved hypothetic 53.1 49 0.0011 27.5 6.0 65 299-364 88-155 (160)
275 COG1763 MobB Molybdopterin-gua 53.0 29 0.00063 28.9 4.8 42 79-125 1-42 (161)
276 COG1618 Predicted nucleotide k 52.9 1.4E+02 0.003 25.1 8.6 40 77-122 3-42 (179)
277 PRK05568 flavodoxin; Provision 52.7 46 0.00099 26.8 6.0 38 81-123 3-40 (142)
278 PLN02778 3,5-epimerase/4-reduc 52.4 25 0.00055 32.7 5.0 34 76-119 6-39 (298)
279 CHL00194 ycf39 Ycf39; Provisio 52.0 20 0.00044 33.7 4.3 34 80-123 1-34 (317)
280 PRK13934 stationary phase surv 51.6 22 0.00048 32.3 4.1 40 80-127 1-40 (266)
281 COG1519 KdtA 3-deoxy-D-manno-o 51.6 1.2E+02 0.0025 29.7 9.0 98 286-389 49-153 (419)
282 TIGR01380 glut_syn glutathione 51.5 15 0.00033 34.5 3.3 43 80-125 1-43 (312)
283 PRK00676 hemA glutamyl-tRNA re 51.0 2.3E+02 0.0049 27.0 12.3 130 318-460 174-319 (338)
284 PRK05723 flavodoxin; Provision 50.9 28 0.00061 28.7 4.4 36 80-120 1-36 (151)
285 PRK07313 phosphopantothenoylcy 50.7 36 0.00078 29.1 5.1 38 80-124 2-39 (182)
286 PLN02695 GDP-D-mannose-3',5'-e 50.5 25 0.00054 34.0 4.7 35 78-122 20-54 (370)
287 PRK05647 purN phosphoribosylgl 50.5 42 0.00091 29.2 5.6 96 79-183 1-110 (200)
288 PF02525 Flavodoxin_2: Flavodo 50.5 33 0.00072 29.6 5.1 43 80-124 1-44 (199)
289 PF09198 T4-Gluco-transf: Bact 50.3 48 0.001 19.0 5.5 38 80-117 1-38 (38)
290 COG0300 DltE Short-chain dehyd 49.9 39 0.00085 30.8 5.5 37 79-124 5-41 (265)
291 PF12046 DUF3529: Protein of u 49.2 91 0.002 26.2 6.9 59 19-118 4-62 (173)
292 PF00201 UDPGT: UDP-glucoronos 48.9 5.6 0.00012 40.3 -0.1 28 96-123 10-37 (500)
293 PRK10569 NAD(P)H-dependent FMN 48.8 49 0.0011 28.5 5.8 39 80-122 1-40 (191)
294 PRK00170 azoreductase; Reviewe 48.1 56 0.0012 28.2 6.2 41 79-123 1-45 (201)
295 PRK10017 colanic acid biosynth 47.8 1.3E+02 0.0027 29.8 9.1 100 292-391 5-157 (426)
296 KOG3040 Predicted sugar phosph 47.0 2E+02 0.0043 25.2 9.2 125 293-424 115-259 (262)
297 COG0223 Fmt Methionyl-tRNA for 46.8 54 0.0012 30.6 5.9 93 79-183 1-109 (307)
298 cd01017 AdcA Metal binding pro 46.7 2.2E+02 0.0048 26.2 10.2 107 349-460 44-169 (282)
299 PRK13761 hypothetical protein; 46.3 1.4E+02 0.003 26.4 7.7 92 355-458 148-240 (248)
300 COG2085 Predicted dinucleotide 46.3 28 0.00062 30.3 3.8 38 79-127 1-38 (211)
301 PF10649 DUF2478: Protein of u 46.2 35 0.00075 28.4 4.1 38 351-388 86-129 (159)
302 COG1087 GalE UDP-glucose 4-epi 46.1 28 0.0006 32.2 3.8 35 80-124 1-35 (329)
303 PRK05569 flavodoxin; Provision 46.0 67 0.0014 25.8 5.9 38 81-123 3-40 (141)
304 PRK10037 cell division protein 45.7 41 0.0009 30.3 5.1 39 80-124 1-41 (250)
305 cd03146 GAT1_Peptidase_E Type 45.4 1.3E+02 0.0028 26.3 8.0 90 301-392 16-124 (212)
306 PRK10427 putative PTS system f 45.1 60 0.0013 25.3 5.1 41 80-125 3-45 (114)
307 PF06564 YhjQ: YhjQ protein; 45.1 52 0.0011 29.6 5.4 41 80-124 1-41 (243)
308 PRK05472 redox-sensing transcr 45.0 2.1E+02 0.0046 25.0 10.6 41 348-389 135-177 (213)
309 PF03446 NAD_binding_2: NAD bi 44.9 41 0.0009 28.0 4.6 33 79-122 1-33 (163)
310 PRK05718 keto-hydroxyglutarate 44.3 1.7E+02 0.0036 25.8 8.4 77 306-387 54-133 (212)
311 TIGR03029 EpsG chain length de 44.2 51 0.0011 30.2 5.6 49 71-123 94-142 (274)
312 COG0803 LraI ABC-type metal io 43.8 2.2E+02 0.0047 26.7 9.7 108 350-461 74-190 (303)
313 PRK06718 precorrin-2 dehydroge 43.6 2.2E+02 0.0048 24.7 12.9 129 308-443 25-165 (202)
314 PLN03050 pyridoxine (pyridoxam 43.4 50 0.0011 29.8 5.1 34 81-121 62-95 (246)
315 PRK08105 flavodoxin; Provision 43.3 52 0.0011 27.0 4.9 28 94-121 11-38 (149)
316 PF04413 Glycos_transf_N: 3-De 42.9 2E+02 0.0043 24.6 8.6 97 288-389 23-125 (186)
317 TIGR02069 cyanophycinase cyano 42.9 1.5E+02 0.0033 26.8 8.2 92 301-393 12-127 (250)
318 PF02635 DrsE: DsrE/DsrF-like 42.5 59 0.0013 25.0 5.0 42 80-124 1-45 (122)
319 TIGR01470 cysG_Nterm siroheme 42.2 2.3E+02 0.0051 24.6 13.0 129 309-444 25-166 (205)
320 PRK09004 FMN-binding protein M 42.1 57 0.0012 26.6 4.9 35 81-120 3-37 (146)
321 PF03853 YjeF_N: YjeF-related 42.1 90 0.002 26.2 6.3 40 79-125 25-64 (169)
322 PRK13869 plasmid-partitioning 42.1 72 0.0016 31.3 6.4 44 77-124 118-161 (405)
323 cd01019 ZnuA Zinc binding prot 41.8 2.9E+02 0.0062 25.6 11.5 107 349-460 44-177 (286)
324 PRK06444 prephenate dehydrogen 41.8 28 0.0006 30.2 3.1 28 80-117 1-28 (197)
325 PRK06029 3-octaprenyl-4-hydrox 41.6 53 0.0011 28.1 4.7 38 80-124 2-40 (185)
326 TIGR00639 PurN phosphoribosylg 41.6 1.1E+02 0.0023 26.4 6.7 95 80-183 1-109 (190)
327 KOG0832 Mitochondrial/chloropl 41.4 1.5E+02 0.0032 26.2 7.2 39 338-388 164-202 (251)
328 COG0655 WrbA Multimeric flavod 40.6 70 0.0015 27.9 5.6 42 80-124 1-42 (207)
329 PF02374 ArsA_ATPase: Anion-tr 40.6 64 0.0014 30.2 5.6 40 80-126 1-42 (305)
330 PLN02896 cinnamyl-alcohol dehy 40.2 47 0.001 31.7 4.8 37 76-122 7-43 (353)
331 PRK14619 NAD(P)H-dependent gly 40.2 53 0.0012 30.8 5.1 35 78-123 3-37 (308)
332 PRK05653 fabG 3-ketoacyl-(acyl 40.2 49 0.0011 29.3 4.7 25 96-123 15-39 (246)
333 PF11238 DUF3039: Protein of u 40.0 24 0.00053 23.4 1.8 16 373-388 15-30 (58)
334 TIGR01755 flav_wrbA NAD(P)H:qu 39.9 67 0.0015 27.8 5.3 39 80-123 1-40 (197)
335 PRK08309 short chain dehydroge 39.9 54 0.0012 27.8 4.6 21 102-122 12-32 (177)
336 PRK13845 putative glycerol-3-p 39.9 30 0.00066 33.6 3.3 39 77-120 92-130 (437)
337 PRK13849 putative crown gall t 39.8 84 0.0018 28.0 6.0 39 80-124 1-41 (231)
338 COG4088 Predicted nucleotide k 39.7 32 0.0007 29.9 3.1 37 81-122 2-38 (261)
339 PRK05579 bifunctional phosphop 39.6 64 0.0014 31.5 5.6 38 79-123 6-43 (399)
340 TIGR00460 fmt methionyl-tRNA f 39.4 63 0.0014 30.4 5.4 93 80-183 1-108 (313)
341 PRK13234 nifH nitrogenase redu 39.3 91 0.002 29.0 6.4 43 78-125 2-44 (295)
342 PRK05749 3-deoxy-D-manno-octul 39.2 3.4E+02 0.0073 26.6 10.9 97 288-389 52-154 (425)
343 PLN02240 UDP-glucose 4-epimera 38.9 43 0.00093 31.8 4.4 35 77-121 3-37 (352)
344 PRK09548 PTS system ascorbate- 38.9 2.4E+02 0.0052 29.2 9.4 43 76-123 503-545 (602)
345 KOG1495 Lactate dehydrogenase 38.9 3E+02 0.0066 25.2 9.0 101 285-388 88-203 (332)
346 PLN00198 anthocyanidin reducta 38.7 65 0.0014 30.5 5.5 23 101-123 21-43 (338)
347 PRK14494 putative molybdopteri 38.7 75 0.0016 28.3 5.4 38 80-122 1-38 (229)
348 PHA02957 hypothetical protein; 38.6 40 0.00086 27.0 3.2 41 20-62 14-54 (206)
349 TIGR02690 resist_ArsH arsenica 38.5 1E+02 0.0022 27.2 6.2 43 76-122 23-66 (219)
350 PRK09358 adenosine deaminase; 38.5 3.5E+02 0.0076 25.6 14.0 143 302-460 181-337 (340)
351 PRK10675 UDP-galactose-4-epime 38.2 38 0.00083 32.0 3.9 32 80-121 1-32 (338)
352 TIGR02026 BchE magnesium-proto 37.9 55 0.0012 33.1 5.0 42 81-122 1-46 (497)
353 PRK09273 hypothetical protein; 37.8 72 0.0016 27.8 4.9 40 80-123 1-40 (211)
354 TIGR02257 cobalto_cobN cobalto 37.7 37 0.00079 37.9 3.9 49 68-117 360-414 (1122)
355 TIGR01182 eda Entner-Doudoroff 37.7 2.8E+02 0.006 24.2 8.6 76 304-386 45-125 (204)
356 PLN03069 magnesiumprotoporphyr 37.6 38 0.00083 38.2 4.1 49 68-117 433-487 (1220)
357 TIGR02025 BchH magnesium chela 37.5 38 0.00083 38.1 4.0 49 68-117 406-460 (1216)
358 PLN00141 Tic62-NAD(P)-related 37.4 54 0.0012 29.5 4.5 35 79-123 17-51 (251)
359 COG0062 Uncharacterized conser 37.2 81 0.0018 27.4 5.2 42 79-127 49-90 (203)
360 PRK13405 bchH magnesium chelat 37.1 38 0.00082 38.1 3.9 49 68-117 428-482 (1209)
361 smart00115 CASc Caspase, inter 37.0 89 0.0019 28.1 5.8 49 75-123 3-53 (241)
362 TIGR02113 coaC_strep phosphopa 36.9 79 0.0017 26.9 5.1 26 99-124 13-38 (177)
363 KOG1838 Alpha/beta hydrolase [ 36.9 75 0.0016 30.9 5.4 40 81-124 126-165 (409)
364 PRK12493 magnesium chelatase s 36.7 39 0.00085 38.4 4.0 48 68-116 421-474 (1310)
365 PRK14571 D-alanyl-alanine synt 36.6 85 0.0018 29.2 5.8 41 80-122 1-41 (299)
366 cd01967 Nitrogenase_MoFe_alpha 36.6 4.1E+02 0.009 25.9 14.2 176 226-424 62-258 (406)
367 PRK06732 phosphopantothenate-- 36.6 68 0.0015 28.6 4.9 26 94-122 24-49 (229)
368 PRK06895 putative anthranilate 36.5 56 0.0012 28.1 4.2 34 80-123 2-35 (190)
369 PF13614 AAA_31: AAA domain; P 36.5 1E+02 0.0022 25.1 5.8 38 82-124 3-40 (157)
370 PRK05989 cobN cobaltochelatase 36.3 28 0.0006 39.4 2.8 49 68-117 363-417 (1244)
371 TIGR03453 partition_RepA plasm 36.3 1E+02 0.0022 29.9 6.5 45 76-124 100-144 (387)
372 PTZ00182 3-methyl-2-oxobutanat 36.1 2.1E+02 0.0046 27.5 8.4 75 287-382 235-311 (355)
373 cd03145 GAT1_cyanophycinase Ty 36.1 2.8E+02 0.0061 24.4 8.7 47 347-393 73-128 (217)
374 TIGR03371 cellulose_yhjQ cellu 36.0 81 0.0018 28.1 5.5 41 80-124 1-41 (246)
375 PRK12825 fabG 3-ketoacyl-(acyl 35.9 66 0.0014 28.4 4.9 34 80-123 7-40 (249)
376 TIGR03018 pepcterm_TyrKin exop 35.7 1.4E+02 0.003 25.9 6.7 43 78-124 33-76 (207)
377 COG0003 ArsA Predicted ATPase 35.5 71 0.0015 30.1 5.0 41 80-127 2-44 (322)
378 TIGR03682 arCOG04112 arCOG0411 35.2 1.4E+02 0.003 28.1 6.8 30 96-125 11-40 (308)
379 PRK09288 purT phosphoribosylgl 35.1 84 0.0018 30.6 5.8 38 76-124 9-46 (395)
380 PRK04155 chaperone protein Hch 34.9 1.7E+02 0.0037 27.1 7.3 45 79-123 49-100 (287)
381 PRK01355 azoreductase; Reviewe 34.9 1.3E+02 0.0028 26.0 6.3 41 79-123 1-46 (199)
382 PRK13398 3-deoxy-7-phosphohept 34.9 3.6E+02 0.0078 24.7 10.4 94 292-390 31-142 (266)
383 cd01410 SIRT7 SIRT7: Eukaryoti 34.8 1.3E+02 0.0029 26.2 6.3 55 338-392 132-192 (206)
384 PRK00211 sulfur relay protein 34.6 98 0.0021 24.3 4.9 41 80-124 2-43 (119)
385 PRK10360 DNA-binding transcrip 34.6 1.8E+02 0.0039 24.4 7.2 67 358-424 48-118 (196)
386 TIGR03012 sulf_tusD_dsrE sulfu 34.6 91 0.002 24.8 4.8 41 81-124 1-42 (127)
387 PRK05282 (alpha)-aspartyl dipe 34.3 2.3E+02 0.005 25.3 7.8 56 335-392 59-123 (233)
388 PF01297 TroA: Periplasmic sol 34.2 1.1E+02 0.0023 27.7 5.9 107 350-460 40-148 (256)
389 PRK13768 GTPase; Provisional 34.2 97 0.0021 28.1 5.6 39 80-123 2-40 (253)
390 PRK11780 isoprenoid biosynthes 34.2 81 0.0017 27.8 4.9 42 80-124 2-44 (217)
391 PRK11914 diacylglycerol kinase 34.1 1.2E+02 0.0025 28.4 6.3 42 79-123 8-49 (306)
392 CHL00175 minD septum-site dete 34.1 1E+02 0.0022 28.3 5.8 41 79-123 14-54 (281)
393 PF00852 Glyco_transf_10: Glyc 34.0 60 0.0013 31.1 4.4 122 288-432 177-305 (349)
394 PHA02519 plasmid partition pro 34.0 96 0.0021 30.2 5.8 44 76-123 102-146 (387)
395 KOG2585 Uncharacterized conser 34.0 95 0.0021 30.3 5.5 40 80-126 267-306 (453)
396 cd01018 ZntC Metal binding pro 33.9 3.7E+02 0.0079 24.5 10.3 106 349-460 43-168 (266)
397 cd01016 TroA Metal binding pro 33.8 3.8E+02 0.0082 24.6 10.9 107 349-459 42-156 (276)
398 PRK05557 fabG 3-ketoacyl-(acyl 33.6 75 0.0016 28.1 4.9 22 102-123 18-39 (248)
399 TIGR02690 resist_ArsH arsenica 33.6 3.4E+02 0.0074 24.0 8.6 91 288-387 28-133 (219)
400 PF02302 PTS_IIB: PTS system, 33.5 1.1E+02 0.0024 22.1 5.0 36 81-122 1-37 (90)
401 PHA00451 protein kinase 33.3 85 0.0019 28.4 4.7 39 381-424 205-243 (362)
402 PLN02657 3,8-divinyl protochlo 33.3 73 0.0016 31.1 4.9 37 77-123 58-94 (390)
403 KOG1429 dTDP-glucose 4-6-dehyd 33.2 78 0.0017 29.1 4.5 39 77-125 25-63 (350)
404 PF01936 NYN: NYN domain; Int 33.1 1.2E+02 0.0025 24.3 5.5 64 298-362 75-143 (146)
405 PF04321 RmlD_sub_bind: RmlD s 33.0 52 0.0011 30.4 3.7 33 80-122 1-33 (286)
406 PF00258 Flavodoxin_1: Flavodo 33.0 1.1E+02 0.0023 24.6 5.2 32 94-125 6-37 (143)
407 PRK09545 znuA high-affinity zi 32.9 4.2E+02 0.0091 24.9 10.9 53 405-460 147-201 (311)
408 PRK13556 azoreductase; Provisi 32.9 1.3E+02 0.0029 26.1 6.1 42 80-123 2-46 (208)
409 PF00185 OTCace: Aspartate/orn 32.8 87 0.0019 26.0 4.6 37 79-124 2-38 (158)
410 PF03721 UDPG_MGDP_dh_N: UDP-g 32.8 71 0.0015 27.3 4.2 33 80-123 1-33 (185)
411 TIGR00272 DPH2 diphthamide bio 32.7 1.6E+02 0.0034 29.8 7.2 41 79-127 51-95 (496)
412 PLN03049 pyridoxine (pyridoxam 32.7 77 0.0017 31.7 5.0 37 81-124 61-97 (462)
413 PLN02650 dihydroflavonol-4-red 32.5 90 0.0019 29.7 5.4 35 78-122 4-38 (351)
414 COG3414 SgaB Phosphotransferas 32.5 95 0.0021 23.1 4.3 35 79-118 1-35 (93)
415 PRK06924 short chain dehydroge 32.4 65 0.0014 28.8 4.2 24 96-122 11-34 (251)
416 cd03129 GAT1_Peptidase_E_like 32.3 2.6E+02 0.0056 24.3 7.8 47 347-393 70-125 (210)
417 KOG0780 Signal recognition par 32.3 82 0.0018 30.4 4.7 71 94-164 110-192 (483)
418 PRK10538 malonic semialdehyde 32.2 66 0.0014 28.7 4.3 33 80-122 1-33 (248)
419 PRK07023 short chain dehydroge 32.1 63 0.0014 28.7 4.1 33 80-122 2-34 (243)
420 PRK13011 formyltetrahydrofolat 31.9 90 0.002 28.9 5.0 99 76-183 86-195 (286)
421 COG2204 AtoC Response regulato 31.9 3.1E+02 0.0068 27.4 8.9 76 349-424 38-122 (464)
422 PRK05993 short chain dehydroge 31.9 72 0.0016 29.2 4.5 34 80-122 4-37 (277)
423 TIGR00421 ubiX_pad polyprenyl 31.8 95 0.0021 26.5 4.8 29 96-124 8-37 (181)
424 cd02040 NifH NifH gene encodes 31.6 1.2E+02 0.0026 27.5 5.9 30 96-125 12-41 (270)
425 TIGR00853 pts-lac PTS system, 31.5 1.5E+02 0.0033 22.1 5.3 39 79-123 3-41 (95)
426 PLN02683 pyruvate dehydrogenas 31.5 3.7E+02 0.0079 25.9 9.2 111 288-424 231-352 (356)
427 PRK03708 ppnK inorganic polyph 31.4 1E+02 0.0022 28.4 5.2 36 80-120 1-36 (277)
428 PRK13236 nitrogenase reductase 31.3 1.5E+02 0.0033 27.5 6.6 44 76-126 2-47 (296)
429 PLN02427 UDP-apiose/xylose syn 31.3 74 0.0016 30.8 4.7 37 76-122 11-48 (386)
430 COG0647 NagD Predicted sugar p 31.2 2.7E+02 0.0058 25.6 7.8 100 309-424 82-183 (269)
431 cd00032 CASc Caspase, interleu 31.1 1.4E+02 0.0031 26.8 6.1 45 79-123 8-55 (243)
432 PRK05447 1-deoxy-D-xylulose 5- 31.0 2.5E+02 0.0053 27.3 7.8 82 299-389 36-122 (385)
433 COG1091 RfbD dTDP-4-dehydrorha 31.0 38 0.00082 31.1 2.4 33 80-123 1-33 (281)
434 PRK05693 short chain dehydroge 30.9 65 0.0014 29.3 4.0 34 80-122 1-34 (274)
435 cd01409 SIRT4 SIRT4: Eukaryoti 30.9 1.6E+02 0.0035 26.8 6.5 56 338-393 181-242 (260)
436 PLN02662 cinnamyl-alcohol dehy 30.8 1.1E+02 0.0025 28.4 5.8 28 96-123 11-38 (322)
437 PRK08177 short chain dehydroge 30.8 76 0.0016 27.8 4.3 35 80-123 1-35 (225)
438 KOG1192 UDP-glucuronosyl and U 30.7 81 0.0018 31.7 5.0 39 80-125 7-45 (496)
439 PRK00005 fmt methionyl-tRNA fo 30.7 1.1E+02 0.0023 28.8 5.4 32 80-122 1-32 (309)
440 PRK01966 ddl D-alanyl-alanine 30.6 1.1E+02 0.0024 29.0 5.6 43 78-123 2-45 (333)
441 PRK00048 dihydrodipicolinate r 30.4 95 0.0021 28.2 4.9 44 349-393 52-95 (257)
442 PF10727 Rossmann-like: Rossma 30.3 1.2E+02 0.0026 24.1 4.8 35 78-123 9-43 (127)
443 PRK07231 fabG 3-ketoacyl-(acyl 30.2 85 0.0018 27.9 4.6 35 79-123 5-39 (251)
444 PLN03241 magnesium chelatase s 30.1 45 0.00097 38.0 3.1 49 68-117 501-555 (1353)
445 PTZ00409 Sir2 (Silent Informat 30.0 4.2E+02 0.0091 24.3 9.0 83 338-424 176-264 (271)
446 KOG3339 Predicted glycosyltran 30.0 3.6E+02 0.0077 23.1 7.8 28 78-112 37-64 (211)
447 PRK13396 3-deoxy-7-phosphohept 29.9 5.1E+02 0.011 24.9 12.1 94 292-390 105-216 (352)
448 PRK11199 tyrA bifunctional cho 29.8 62 0.0013 31.3 3.8 35 78-122 97-131 (374)
449 COG0429 Predicted hydrolase of 29.7 2E+02 0.0043 27.2 6.6 33 94-126 85-117 (345)
450 COG0451 WcaG Nucleoside-diphos 29.5 81 0.0017 29.2 4.5 26 101-126 12-37 (314)
451 PRK10446 ribosomal protein S6 29.4 71 0.0015 29.7 4.0 36 80-123 1-36 (300)
452 PRK06522 2-dehydropantoate 2-r 29.4 70 0.0015 29.7 4.0 33 80-123 1-33 (304)
453 PRK07236 hypothetical protein; 29.4 59 0.0013 31.5 3.6 37 76-123 3-39 (386)
454 PRK07060 short chain dehydroge 29.1 1E+02 0.0022 27.2 5.0 24 96-122 19-42 (245)
455 PRK13886 conjugal transfer pro 29.1 1.7E+02 0.0036 26.4 6.0 41 80-124 2-42 (241)
456 PLN02989 cinnamyl-alcohol dehy 29.0 1.2E+02 0.0026 28.5 5.5 23 101-123 17-39 (325)
457 PRK15181 Vi polysaccharide bio 28.9 79 0.0017 30.1 4.3 35 78-122 14-48 (348)
458 PF00070 Pyr_redox: Pyridine n 28.9 69 0.0015 22.7 3.1 26 101-126 10-35 (80)
459 COG0702 Predicted nucleoside-d 28.7 57 0.0012 29.5 3.3 37 80-126 1-37 (275)
460 PRK02122 glucosamine-6-phospha 28.6 1.3E+02 0.0028 31.7 6.0 44 76-125 366-409 (652)
461 PRK05708 2-dehydropantoate 2-r 28.5 52 0.0011 30.8 2.9 34 79-123 2-35 (305)
462 PRK09072 short chain dehydroge 28.5 98 0.0021 27.9 4.8 21 102-122 18-38 (263)
463 PLN02918 pyridoxine (pyridoxam 28.5 1.1E+02 0.0024 31.2 5.2 37 80-123 136-172 (544)
464 COG1618 Predicted nucleotide k 28.5 1.2E+02 0.0026 25.4 4.6 74 349-424 92-177 (179)
465 PRK07666 fabG 3-ketoacyl-(acyl 28.4 1E+02 0.0023 27.2 4.8 21 102-122 20-40 (239)
466 cd03116 MobB Molybdenum is an 28.4 1.9E+02 0.004 24.1 5.9 39 80-123 1-39 (159)
467 PRK12921 2-dehydropantoate 2-r 28.3 65 0.0014 30.0 3.6 31 80-121 1-31 (305)
468 TIGR01281 DPOR_bchL light-inde 28.2 1.2E+02 0.0025 27.6 5.2 37 80-124 1-39 (268)
469 PF09140 MipZ: ATPase MipZ; I 28.2 1.5E+02 0.0031 26.9 5.4 39 82-124 2-40 (261)
470 KOG0854 Alkyl hydroperoxide re 28.1 1.4E+02 0.0031 25.1 4.8 83 275-365 130-213 (224)
471 TIGR03466 HpnA hopanoid-associ 28.1 76 0.0016 29.6 4.1 34 80-123 1-34 (328)
472 PF01656 CbiA: CobQ/CobB/MinD/ 28.0 1.6E+02 0.0035 24.9 5.8 32 94-125 8-39 (195)
473 COG1429 CobN Cobalamin biosynt 28.0 68 0.0015 36.8 4.1 51 67-118 368-424 (1388)
474 CHL00072 chlL photochlorophyll 27.9 1.5E+02 0.0032 27.5 5.8 39 80-126 1-41 (290)
475 PF07085 DRTGG: DRTGG domain; 27.8 96 0.0021 23.5 3.8 26 338-363 63-89 (105)
476 TIGR00521 coaBC_dfp phosphopan 27.7 1.1E+02 0.0025 29.7 5.1 39 79-124 3-41 (390)
477 PRK08655 prephenate dehydrogen 27.7 71 0.0015 31.7 3.8 33 80-122 1-33 (437)
478 PLN02572 UDP-sulfoquinovose sy 27.6 1E+02 0.0023 30.6 5.0 32 79-120 47-78 (442)
479 PRK01911 ppnK inorganic polyph 27.4 1.2E+02 0.0026 28.2 5.0 36 80-120 1-36 (292)
480 COG2120 Uncharacterized protei 27.4 1.6E+02 0.0035 26.3 5.7 45 76-126 7-51 (237)
481 TIGR00651 pta phosphate acetyl 27.3 2.5E+02 0.0053 26.3 7.1 80 297-387 193-273 (303)
482 CHL00144 odpB pyruvate dehydro 27.3 5.4E+02 0.012 24.4 9.6 113 288-424 204-325 (327)
483 PRK06027 purU formyltetrahydro 27.0 84 0.0018 29.1 3.9 98 76-183 86-195 (286)
484 PRK14495 putative molybdopteri 27.0 1.2E+02 0.0027 29.9 5.1 40 80-124 1-40 (452)
485 PRK00094 gpsA NAD(P)H-dependen 26.9 86 0.0019 29.4 4.2 33 80-123 2-34 (325)
486 PRK14618 NAD(P)H-dependent gly 26.9 94 0.002 29.4 4.4 34 79-123 4-37 (328)
487 cd00862 ProRS_anticodon_zinc P 26.8 4.1E+02 0.009 23.0 8.0 91 349-442 33-127 (202)
488 TIGR02853 spore_dpaA dipicolin 26.8 5E+02 0.011 24.0 9.0 27 96-123 8-34 (287)
489 cd03147 GATase1_Ydr533c_like T 26.7 1.6E+02 0.0034 26.3 5.5 43 81-123 1-48 (231)
490 TIGR02852 spore_dpaB dipicolin 26.6 1.6E+02 0.0034 25.4 5.2 22 103-124 18-39 (187)
491 TIGR00337 PyrG CTP synthase. C 26.5 7E+02 0.015 25.4 19.4 41 80-123 1-41 (525)
492 PRK07114 keto-hydroxyglutarate 26.4 4.6E+02 0.0099 23.2 8.5 45 338-386 92-136 (222)
493 PRK06719 precorrin-2 dehydroge 26.4 63 0.0014 26.8 2.7 33 79-122 13-45 (157)
494 PRK12829 short chain dehydroge 26.4 84 0.0018 28.2 3.9 35 78-122 10-44 (264)
495 PRK13054 lipid kinase; Reviewe 26.4 1.7E+02 0.0036 27.3 5.9 39 79-123 3-41 (300)
496 PRK07326 short chain dehydroge 26.4 1.1E+02 0.0023 27.0 4.5 21 102-122 19-39 (237)
497 PRK10310 PTS system galactitol 26.3 1.7E+02 0.0037 21.7 4.8 36 81-122 4-40 (94)
498 PRK08057 cobalt-precorrin-6x r 26.3 1.4E+02 0.003 27.0 5.1 82 79-173 2-83 (248)
499 PRK11064 wecC UDP-N-acetyl-D-m 26.3 91 0.002 30.7 4.3 34 79-123 3-36 (415)
500 PLN02225 1-deoxy-D-xylulose-5- 26.2 2.8E+02 0.006 29.4 7.8 82 339-423 600-691 (701)
No 1
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=2.6e-44 Score=357.43 Aligned_cols=354 Identities=19% Similarity=0.247 Sum_probs=268.9
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEE--ee--cC---C----
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHF--AA--ND---H---- 145 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~--~~--~~---~---- 145 (465)
.++|||++++...|+ +..||++.++.+++++|.++||+|++++......... .+...+.. .. .. .
T Consensus 56 ~~~mrI~~~~~~~~~-~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~---~g~~v~~~~~~~~~~~~~~~~~~~ 131 (465)
T PLN02871 56 SRPRRIALFVEPSPF-SYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEF---HGAKVIGSWSFPCPFYQKVPLSLA 131 (465)
T ss_pred CCCceEEEEECCcCC-cccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccc---cCceeeccCCcCCccCCCceeecc
Confidence 668999999875544 5779999999999999999999999999865432111 01000000 00 00 0
Q ss_pred ---CccccCCCCCCcEEEecCCchhHH------hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhh
Q 044542 146 ---GSVNLNNDGAFDYVHTESVSLPHW------RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAM 216 (465)
Q Consensus 146 ---~~~~~~~~~~~DiI~~~~~~~~~~------~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (465)
......++.+||+||+|+.....+ ...++| +++++|+......... .+ ..+.+.+
T Consensus 132 ~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip-~V~~~h~~~~~~~~~~--------------~~-~~~~~~~ 195 (465)
T PLN02871 132 LSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVP-LVMSYHTHVPVYIPRY--------------TF-SWLVKPM 195 (465)
T ss_pred CCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCC-EEEEEecCchhhhhcc--------------cc-hhhHHHH
Confidence 001112678999999997642221 223567 8999997543211100 00 0111111
Q ss_pred HHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeecc
Q 044542 217 PRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRL 296 (465)
Q Consensus 217 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl 296 (465)
... ++.+++.+|.++++|+..++.+.+.+..+.+++.++|||+|.+.|.+.... ...+.++....++..+|+|+||+
T Consensus 196 ~~~--~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~-~~~~~~~~~~~~~~~~i~~vGrl 272 (465)
T PLN02871 196 WDI--IRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRS-EEMRARLSGGEPEKPLIVYVGRL 272 (465)
T ss_pred HHH--HHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCcccc-HHHHHHhcCCCCCCeEEEEeCCC
Confidence 111 235678899999999999999988544567899999999999888664321 23444443222233678899999
Q ss_pred ccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHH
Q 044542 297 VRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLT 374 (465)
Q Consensus 297 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~ 374 (465)
.+.||++.++++++++ ++++|+|+|+|++.+.++++. .+|.|+|+++++++.++|+.||++|+||.. |++|++
T Consensus 273 ~~~K~~~~li~a~~~~----~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~-E~~g~~ 347 (465)
T PLN02871 273 GAEKNLDFLKRVMERL----PGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSES-ETLGFV 347 (465)
T ss_pred chhhhHHHHHHHHHhC----CCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCcc-cccCcH
Confidence 9999999999999876 689999999999888887765 689999999999999999999999999975 999999
Q ss_pred HHHHHHcCCeEEecCCCCcceeeeee---CCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHH
Q 044542 375 LIEAMHCGRTVLTPNYPSIVRTVVVN---EELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMA 450 (465)
Q Consensus 375 ~~EAma~G~PvI~s~~gg~~~e~v~~---~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 450 (465)
++|||+||+|||+++.+|.. |++.+ +++|+++++ |+++++++|.+++++ ++.+++|+++++++++ +|+|+.++
T Consensus 348 vlEAmA~G~PVI~s~~gg~~-eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~-~fsw~~~a 424 (465)
T PLN02871 348 VLEAMASGVPVVAARAGGIP-DIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD-PELRERMGAAAREEVE-KWDWRAAT 424 (465)
T ss_pred HHHHHHcCCCEEEcCCCCcH-hhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH-hCCHHHHH
Confidence 99999999999999999998 88888 899999998 999999999999998 8999999999999986 59999999
Q ss_pred HHHHH-HHHHhc
Q 044542 451 SAYER-FFLRMK 461 (465)
Q Consensus 451 ~~~~~-~~~~~~ 461 (465)
+++++ .|++++
T Consensus 425 ~~l~~~~Y~~~~ 436 (465)
T PLN02871 425 RKLRNEQYSAAI 436 (465)
T ss_pred HHHHHHHHHHHH
Confidence 99998 798765
No 2
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=3e-44 Score=352.84 Aligned_cols=361 Identities=18% Similarity=0.222 Sum_probs=272.4
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCC-----------CcccCCcceEEEeecC----
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPH-----------NDVHQGNLHVHFAAND---- 144 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-----------~~~~~~~~~v~~~~~~---- 144 (465)
|||++++..|+ |..||.+.++.+++++|.+.||+|+|+|+.+..... ......+..+...+..
T Consensus 1 mkIlii~~~~~--P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~ 78 (412)
T PRK10307 1 MKILVYGINYA--PELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQ 78 (412)
T ss_pred CeEEEEecCCC--CCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCC
Confidence 79999998775 367999999999999999999999999976421110 0011123333332211
Q ss_pred CCcc----c-----------cC--CCCCCcEEEecCCchh-----HHhh--hcCCcEEEEecchhHHHHhhhhhhhhhhc
Q 044542 145 HGSV----N-----------LN--NDGAFDYVHTESVSLP-----HWRA--KMVPNVAVTWHGIWYEVMHSKLFGELFSN 200 (465)
Q Consensus 145 ~~~~----~-----------~~--~~~~~DiI~~~~~~~~-----~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~ 200 (465)
...+ . .. ...+||+||+|.+... .+++ .+.| +++++|+.+........ .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~-~v~~~~d~~~~~~~~~~---~--- 151 (412)
T PRK10307 79 PSGLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGAR-TWLHIQDYEVDAAFGLG---L--- 151 (412)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCC-EEEEeccCCHHHHHHhC---C---
Confidence 0000 0 00 1368999999875321 1222 2456 88889987653321110 0
Q ss_pred CCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCccc-Ccccccc
Q 044542 201 QNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEA-GVRFPEK 279 (465)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~-~~~~r~~ 279 (465)
.... .+...... .+...++++|.++++|+..++.+.+ ++++..++.+||||+|.+.|.+.... ...++++
T Consensus 152 ---~~~~---~~~~~~~~--~~~~~~~~ad~ii~~S~~~~~~~~~-~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~ 222 (412)
T PRK10307 152 ---LKGG---KVARLATA--FERSLLRRFDNVSTISRSMMNKARE-KGVAAEKVIFFPNWSEVARFQPVADADVDALRAQ 222 (412)
T ss_pred ---ccCc---HHHHHHHH--HHHHHHhhCCEEEecCHHHHHHHHH-cCCCcccEEEECCCcCHhhcCCCCccchHHHHHH
Confidence 0000 11111111 1336688999999999999999987 57788899999999999887654321 2357778
Q ss_pred cCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh----c-CCeEEcCCCChhHHHHH
Q 044542 280 LGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL----G-QNVKVLGALEAHQLSEF 354 (465)
Q Consensus 280 ~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l----~-~~V~~~g~v~~~~~~~~ 354 (465)
++++++. ++++|+|++.+.||++.+++|++.+.+ .++++|+|+|+|+..+.++++ + ++|.|+|+++++++.++
T Consensus 223 ~~~~~~~-~~i~~~G~l~~~kg~~~li~a~~~l~~-~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~ 300 (412)
T PRK10307 223 LGLPDGK-KIVLYSGNIGEKQGLELVIDAARRLRD-RPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPAL 300 (412)
T ss_pred cCCCCCC-EEEEEcCccccccCHHHHHHHHHHhcc-CCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHH
Confidence 8887665 788899999999999999999998854 478999999999887766543 2 68999999999999999
Q ss_pred HHhcCeEEecccCCCC----CcHHHHHHHHcCCeEEecCCCCcc-eeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHH
Q 044542 355 YNALDVFVNPTLRPQG----LDLTLIEAMHCGRTVLTPNYPSIV-RTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKV 428 (465)
Q Consensus 355 ~~~aDv~v~ps~~~eg----~~~~~~EAma~G~PvI~s~~gg~~-~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~ 428 (465)
|++||++++||.. |+ +|.+++|||+||+|||+|+.+|.. .+++. ++|+++++ |+++++++|.+++++ ++.
T Consensus 301 ~~~aDi~v~ps~~-e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~-~~~ 376 (412)
T PRK10307 301 LKMADCHLLPQKA-GAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQ-ALL 376 (412)
T ss_pred HHhcCEeEEeecc-CcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhC-HHH
Confidence 9999999999975 77 688999999999999999987631 25555 58999998 999999999999998 899
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCC
Q 044542 429 LQRKGLACKEHALSMFTATKMASAYERFFLRMKNPY 464 (465)
Q Consensus 429 ~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 464 (465)
+++|+++++++++++|||+.++++|.++|++++.++
T Consensus 377 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 412 (412)
T PRK10307 377 RPKLGTVAREYAERTLDKENVLRQFIADIRGLVAER 412 (412)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999988763
No 3
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=6.9e-44 Score=348.32 Aligned_cols=344 Identities=22% Similarity=0.292 Sum_probs=261.2
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCC-----cc-------
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHG-----SV------- 148 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------- 148 (465)
||+++++.|+ |..||.++++..++++|.++||+|+|++.........+....+..+...+.... ..
T Consensus 1 kI~~v~~~~~--p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~ 78 (398)
T cd03796 1 RICMVSDFFY--PNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFP 78 (398)
T ss_pred CeeEEeeccc--cccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHH
Confidence 7999999775 478999999999999999999999999976433221111122223333222110 00
Q ss_pred ---ccCCCCCCcEEEecCCchh----HHh---hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHH
Q 044542 149 ---NLNNDGAFDYVHTESVSLP----HWR---AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPR 218 (465)
Q Consensus 149 ---~~~~~~~~DiI~~~~~~~~----~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (465)
....+.+||+||+|+.... .++ ..++| ++++.|+..... +.. ......
T Consensus 79 ~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~-~v~t~h~~~~~~---~~~---------------~~~~~~--- 136 (398)
T cd03796 79 LLRNILIRERITIVHGHQAFSALAHEALLHARTMGLK-TVFTDHSLFGFA---DAS---------------SIHTNK--- 136 (398)
T ss_pred HHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCc-EEEEeccccccc---chh---------------hHHhhH---
Confidence 0115679999999975311 111 23457 899999853210 000 001111
Q ss_pred HHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeecccc
Q 044542 219 LVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVR 298 (465)
Q Consensus 219 ~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~ 298 (465)
. ....++++|.++++|+...+.+....+++.+++.+||||+|.+.|.+.... .+ ++.++++++||+.+
T Consensus 137 ~--~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~---------~~-~~~~~i~~~grl~~ 204 (398)
T cd03796 137 L--LRFSLADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK---------RD-NDKITIVVISRLVY 204 (398)
T ss_pred H--HHHhhccCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc---------CC-CCceEEEEEeccch
Confidence 1 124568999999999999987665567788999999999998877654321 12 23488889999999
Q ss_pred ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh----c--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCc
Q 044542 299 DKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL----G--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLD 372 (465)
Q Consensus 299 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l----~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~ 372 (465)
.||++.+++|++.+.++.++++|+++|+|+..+.++++ + ++|.|+|+++.+++..+|+.||++++||.. |++|
T Consensus 205 ~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~-E~~g 283 (398)
T cd03796 205 RKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLT-EAFC 283 (398)
T ss_pred hcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChh-hccC
Confidence 99999999999999888899999999999876655543 2 779999999999999999999999999975 9999
Q ss_pred HHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 044542 373 LTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASA 452 (465)
Q Consensus 373 ~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 452 (465)
++++|||+||+|||+++.||.+ |++.++ .++++++|+++++++|.+++++ ......+++++++.++++|||+.++++
T Consensus 284 ~~~~EAma~G~PVI~s~~gg~~-e~i~~~-~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~fs~~~~~~~ 360 (398)
T cd03796 284 IAIVEAASCGLLVVSTRVGGIP-EVLPPD-MILLAEPDVESIVRKLEEAISI-LRTGKHDPWSFHNRVKKMYSWEDVAKR 360 (398)
T ss_pred HHHHHHHHcCCCEEECCCCCch-hheeCC-ceeecCCCHHHHHHHHHHHHhC-hhhhhhHHHHHHHHHHhhCCHHHHHHH
Confidence 9999999999999999999998 787765 4555555999999999999998 555557788999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 044542 453 YERFFLRMKNPY 464 (465)
Q Consensus 453 ~~~~~~~~~~~~ 464 (465)
+.++|++++..+
T Consensus 361 ~~~~y~~l~~~~ 372 (398)
T cd03796 361 TEKVYDRILQTP 372 (398)
T ss_pred HHHHHHHHhcCC
Confidence 999999987653
No 4
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=5.3e-44 Score=354.45 Aligned_cols=369 Identities=20% Similarity=0.278 Sum_probs=262.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC--c------c----------cCCcceEEEe
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN--D------V----------HQGNLHVHFA 141 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~------~----------~~~~~~v~~~ 141 (465)
|||++++.++.+....||.+.++..|+++|++.||+|+|+++........ . . ...+..+.+.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 79999999864446799999999999999999999999999875432211 0 0 1123334433
Q ss_pred ecC-----CCccccC-------------------CCCCCcEEEecCCc--h-hHHhh-------hcCCcEEEEecchhHH
Q 044542 142 AND-----HGSVNLN-------------------NDGAFDYVHTESVS--L-PHWRA-------KMVPNVAVTWHGIWYE 187 (465)
Q Consensus 142 ~~~-----~~~~~~~-------------------~~~~~DiI~~~~~~--~-~~~~~-------~~~p~~v~~~h~~~~~ 187 (465)
... .....+. ...+|||||+|.+. + +.+++ .++| ++.++|+..+.
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~-~v~TiH~~~~~ 159 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIK-TVFTIHNLAYQ 159 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCC-EEEEcCCCcCC
Confidence 211 1111100 23589999999863 2 22222 1457 99999997532
Q ss_pred HHh-hhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHH---------hCCCCCCEEEe
Q 044542 188 VMH-SKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKI---------YQLPQRNVHVI 257 (465)
Q Consensus 188 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~---------~~~~~~ki~vi 257 (465)
... .+..... .. +........+. ........+..++.+|.++++|+..++.+.+. ++.+..|+.+|
T Consensus 160 g~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI 235 (466)
T PRK00654 160 GLFPAEILGEL-GL--PAEAFHLEGLE-FYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGI 235 (466)
T ss_pred CcCCHHHHHHc-CC--ChHHcCchhhh-cCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEe
Confidence 100 0000000 00 00000000000 00001111245789999999999999888652 23456899999
Q ss_pred cCCCCCCCccCCccc-----------------CcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeE
Q 044542 258 LNGVDETKFVHDPEA-----------------GVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVY 320 (465)
Q Consensus 258 ~ngvd~~~~~~~~~~-----------------~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~ 320 (465)
+||+|.+.|.+.... +..+++++|+++++.++++++||+.++||++.+++|++++.++ +++
T Consensus 236 ~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~ 313 (466)
T PRK00654 236 LNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQ 313 (466)
T ss_pred cCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCE
Confidence 999999988774321 2357888999864457888999999999999999999999764 789
Q ss_pred EEEEeCCcc--hhHHHHh----cCCeEE-cCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCc
Q 044542 321 LLVAGTGPW--GRRYAEL----GQNVKV-LGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSI 393 (465)
Q Consensus 321 l~ivG~g~~--~~~~~~l----~~~V~~-~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~ 393 (465)
|+|+|+|+. .+.++++ +.++.+ .|+ +.+.+..+|++||++++||.+ |+||++++|||+||+|+|++++||+
T Consensus 314 lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~-E~~gl~~lEAma~G~p~V~~~~gG~ 391 (466)
T PRK00654 314 LVLLGTGDPELEEAFRALAARYPGKVGVQIGY-DEALAHRIYAGADMFLMPSRF-EPCGLTQLYALRYGTLPIVRRTGGL 391 (466)
T ss_pred EEEEecCcHHHHHHHHHHHHHCCCcEEEEEeC-CHHHHHHHHhhCCEEEeCCCC-CCchHHHHHHHHCCCCEEEeCCCCc
Confidence 999998853 3444443 356665 555 556678999999999999986 9999999999999999999999999
Q ss_pred ceeeeeeC------CceEEeCC-CHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcC
Q 044542 394 VRTVVVNE------ELGYTFSP-NVKSFVEALELVIR---DGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRMKN 462 (465)
Q Consensus 394 ~~e~v~~~------~~G~l~~~-d~~~la~~i~~ll~---~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 462 (465)
. |++.++ .+|+++++ |+++|+++|.++++ + ++.+.++++++. +++|||+.++++|.++|+++++
T Consensus 392 ~-e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~-~~~~~~~~~~~~---~~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 392 A-DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQ-PPLWRALQRQAM---AQDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred c-ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHh---ccCCChHHHHHHHHHHHHHHhh
Confidence 8 888887 89999999 99999999999886 5 566777877764 3679999999999999998864
No 5
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=1.9e-43 Score=343.77 Aligned_cols=339 Identities=18% Similarity=0.248 Sum_probs=262.7
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCc--cc--CCcceEEEeecCC----------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHND--VH--QGNLHVHFAANDH---------- 145 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~--~~~~~v~~~~~~~---------- 145 (465)
|||+++...|| .-.++++.+-+.+|.++||+|++++.......... .. .....+++.+...
T Consensus 1 m~ia~~~~~~P-----~~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (406)
T PRK15427 1 MKVGFFLLKFP-----LSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHR 75 (406)
T ss_pred CeEEEEeccCC-----ccchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhh
Confidence 79999999997 33489999999999999999999997765432110 01 1111222221000
Q ss_pred -----------------Ccccc----------------CCCCCCcEEEecCCchh---HHhhh----cCCcEEEEecchh
Q 044542 146 -----------------GSVNL----------------NNDGAFDYVHTESVSLP---HWRAK----MVPNVAVTWHGIW 185 (465)
Q Consensus 146 -----------------~~~~~----------------~~~~~~DiI~~~~~~~~---~~~~~----~~p~~v~~~h~~~ 185 (465)
..... .++.+||+||+|..... ..++. ..+ .+.++|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~~~~~~~-~~~t~Hg~d 154 (406)
T PRK15427 76 ASQTLRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLRELGVLRGK-IATIFHGID 154 (406)
T ss_pred hhhHhhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHhCCCCCC-eEEEEcccc
Confidence 00000 04678999999975322 22221 124 788999853
Q ss_pred HHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCC
Q 044542 186 YEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETK 265 (465)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~ 265 (465)
.... .. ...... . ....++++|.++++|+..++.+.+ +|++.+++.++|||+|.+.
T Consensus 155 ~~~~--~~---------------~~~~~~----~--~~~~~~~ad~vv~~S~~~~~~l~~-~g~~~~ki~vi~nGvd~~~ 210 (406)
T PRK15427 155 ISSR--EV---------------LNHYTP----E--YQQLFRRGDLMLPISDLWAGRLQK-MGCPPEKIAVSRMGVDMTR 210 (406)
T ss_pred cccc--hh---------------hhhhhH----H--HHHHHHhCCEEEECCHHHHHHHHH-cCCCHHHEEEcCCCCCHHH
Confidence 2100 00 000000 1 124568999999999999999987 6888899999999999988
Q ss_pred ccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh----c--CC
Q 044542 266 FVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL----G--QN 339 (465)
Q Consensus 266 ~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l----~--~~ 339 (465)
|.+.... ..++++.++++||+.+.||++.+++|++.+.+++++++++|+|+|+..+.++++ + ++
T Consensus 211 f~~~~~~----------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~ 280 (406)
T PRK15427 211 FSPRPVK----------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDV 280 (406)
T ss_pred cCCCccc----------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCe
Confidence 7653221 112347888999999999999999999999988889999999999887666543 3 78
Q ss_pred eEEcCCCChhHHHHHHHhcCeEEecccC-----CCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHH
Q 044542 340 VKVLGALEAHQLSEFYNALDVFVNPTLR-----PQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKS 413 (465)
Q Consensus 340 V~~~g~v~~~~~~~~~~~aDv~v~ps~~-----~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~ 413 (465)
|.|+|+++++++.++|+.||++++||.. .||+|++++|||+||+|||+|+.+|++ |++.++.+|+++++ |+++
T Consensus 281 V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~-E~v~~~~~G~lv~~~d~~~ 359 (406)
T PRK15427 281 VEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIP-ELVEADKSGWLVPENDAQA 359 (406)
T ss_pred EEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCch-hhhcCCCceEEeCCCCHHH
Confidence 9999999999999999999999999963 299999999999999999999999998 89999999999999 9999
Q ss_pred HHHHHHHHHh-CChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 414 FVEALELVIR-DGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 414 la~~i~~ll~-~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
++++|.++++ + ++.+++|+++++++++++|+|+.+++++.++|+++
T Consensus 360 la~ai~~l~~~d-~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 360 LAQRLAAFSQLD-TDELAPVVKRAREKVETDFNQQVINRELASLLQAL 406 (406)
T ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 9999999999 7 89999999999999999999999999999999763
No 6
>PLN02316 synthase/transferase
Probab=100.00 E-value=4.9e-43 Score=359.84 Aligned_cols=349 Identities=16% Similarity=0.204 Sum_probs=265.0
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC---cc------------------cCCc
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN---DV------------------HQGN 135 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---~~------------------~~~~ 135 (465)
..+|||++|+.++++-...||...++..|.++|++.||+|+|+++........ .. ...+
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 664 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEG 664 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECC
Confidence 45699999998876556799999999999999999999999999986532110 00 0112
Q ss_pred ceEEEeecCCCc------cccC-------------------CCCCCcEEEecCCc--hhHHh-h--------hcCCcEEE
Q 044542 136 LHVHFAANDHGS------VNLN-------------------NDGAFDYVHTESVS--LPHWR-A--------KMVPNVAV 179 (465)
Q Consensus 136 ~~v~~~~~~~~~------~~~~-------------------~~~~~DiI~~~~~~--~~~~~-~--------~~~p~~v~ 179 (465)
..+.++...... +.+. ...+|||||+|.+. +..++ . .++| +|.
T Consensus 665 V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p-~V~ 743 (1036)
T PLN02316 665 LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKAR-VVF 743 (1036)
T ss_pred cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCC-EEE
Confidence 223333221111 1000 34689999999862 22222 1 1246 999
Q ss_pred EecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCC--CCCEEEe
Q 044542 180 TWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLP--QRNVHVI 257 (465)
Q Consensus 180 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~--~~ki~vi 257 (465)
++|+..+.. . .+. ..+..+|.|+++|+.+++.+...+.+. ..|+.+|
T Consensus 744 TiHnl~~~~----------------------n---~lk------~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI 792 (1036)
T PLN02316 744 TIHNLEFGA----------------------N---HIG------KAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGI 792 (1036)
T ss_pred EeCCcccch----------------------h---HHH------HHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEE
Confidence 999853110 0 011 345789999999999999988754443 4799999
Q ss_pred cCCCCCCCccCCcc------------------cCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCe
Q 044542 258 LNGVDETKFVHDPE------------------AGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGV 319 (465)
Q Consensus 258 ~ngvd~~~~~~~~~------------------~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~ 319 (465)
+||||.+.|.|..+ .+..+++++|++..+..+++++||+.++||++.+++|+..+.+ .++
T Consensus 793 ~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~ 870 (1036)
T PLN02316 793 LNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNG 870 (1036)
T ss_pred ECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCc
Confidence 99999988866421 1234788899985344788899999999999999999999875 478
Q ss_pred EEEEEeCCcch---hHHHH----h----cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEec
Q 044542 320 YLLVAGTGPWG---RRYAE----L----GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTP 388 (465)
Q Consensus 320 ~l~ivG~g~~~---~~~~~----l----~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s 388 (465)
+|+|+|+|+.. +.+++ + .++|.|.|..+......+|+.||++|+||.+ |+||++++|||+||+|+|++
T Consensus 871 qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~-EP~GLvqLEAMa~GtppVvs 949 (1036)
T PLN02316 871 QVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIF-EPCGLTQLTAMRYGSIPVVR 949 (1036)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcc-cCccHHHHHHHHcCCCeEEE
Confidence 99999998653 23332 2 2579998887644456899999999999986 99999999999999999999
Q ss_pred CCCCcceeeeeeC-------------CceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 044542 389 NYPSIVRTVVVNE-------------ELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYE 454 (465)
Q Consensus 389 ~~gg~~~e~v~~~-------------~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 454 (465)
++||++ ++|.++ .+|+++++ |+++|+.+|.+++.+.++....+++.+++.+.++|||+.++++|+
T Consensus 950 ~vGGL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~ 1028 (1036)
T PLN02316 950 KTGGLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYM 1028 (1036)
T ss_pred cCCCcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 999999 787763 68999999 999999999999987456667788899999999999999999999
Q ss_pred HHHHHhc
Q 044542 455 RFFLRMK 461 (465)
Q Consensus 455 ~~~~~~~ 461 (465)
++|+++.
T Consensus 1029 ~LY~~a~ 1035 (1036)
T PLN02316 1029 ELYHSAR 1035 (1036)
T ss_pred HHHHHHh
Confidence 9999875
No 7
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=2.1e-43 Score=342.91 Aligned_cols=350 Identities=22% Similarity=0.286 Sum_probs=263.1
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCC-cc-------ccC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHG-SV-------NLN 151 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-------~~~ 151 (465)
.||+++...+ ..||+++++..++++|.+.|+++++++....+....+....+..+........ .+ +..
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l 77 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLL 77 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHH
Confidence 4899999885 67999999999999999999999898865433222222233333333322211 11 112
Q ss_pred CCCCCcEEEecCCchh--HHh--hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhc
Q 044542 152 NDGAFDYVHTESVSLP--HWR--AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFS 227 (465)
Q Consensus 152 ~~~~~DiI~~~~~~~~--~~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (465)
++.+||+||+|+.... .+. ..+.|..+.+.|+......+. ..+.+.++.+ ...+
T Consensus 78 ~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-----------------~~~~~~~~~~-----~~~~ 135 (374)
T TIGR03088 78 RQLRPDIVHTRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDG-----------------SNWKYRWLRR-----LYRP 135 (374)
T ss_pred HHhCCCEEEEcchhHHHHHHHHHhcCCCeEEEeecCcccccchh-----------------hHHHHHHHHH-----HHHh
Confidence 6789999999975321 111 123453345555432110000 0011122222 2345
Q ss_pred ccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHHH
Q 044542 228 SYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYE 307 (465)
Q Consensus 228 ~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~ 307 (465)
.+|.++++|+..++.+.+.++++..++.+||||+|.+.|.+........+++...+++ +++++++||+.++||++.+++
T Consensus 136 ~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~vGrl~~~Kg~~~li~ 214 (374)
T TIGR03088 136 LIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADE-SVVVGTVGRLQAVKDQPTLVR 214 (374)
T ss_pred cCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCC-CeEEEEEecCCcccCHHHHHH
Confidence 6899999999999999988888889999999999998876654322222223333333 488889999999999999999
Q ss_pred HHHHhhhcCC----CeEEEEEeCCcchhHHHHh----c--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHH
Q 044542 308 AFSSITRDHP----GVYLLVAGTGPWGRRYAEL----G--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIE 377 (465)
Q Consensus 308 a~~~l~~~~~----~~~l~ivG~g~~~~~~~~l----~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~E 377 (465)
|+..+.++.+ +++|+++|+|+..+.++++ + ++|.|.|+. +++.++|++||++++||.. ||+|++++|
T Consensus 215 a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~pS~~-Eg~~~~~lE 291 (374)
T TIGR03088 215 AFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGER--DDVPALMQALDLFVLPSLA-EGISNTILE 291 (374)
T ss_pred HHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCc--CCHHHHHHhcCEEEecccc-ccCchHHHH
Confidence 9999877654 7899999999876655543 2 678999975 7999999999999999975 999999999
Q ss_pred HHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 044542 378 AMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERF 456 (465)
Q Consensus 378 Ama~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 456 (465)
||+||+|||+|+.||.+ |++.++.+|+++++ |+++++++|.+++++ ++.+.++++++++++.++|||+.++++|.++
T Consensus 292 Ama~G~Pvv~s~~~g~~-e~i~~~~~g~~~~~~d~~~la~~i~~l~~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 369 (374)
T TIGR03088 292 AMASGLPVIATAVGGNP-ELVQHGVTGALVPPGDAVALARALQPYVSD-PAARRAHGAAGRARAEQQFSINAMVAAYAGL 369 (374)
T ss_pred HHHcCCCEEEcCCCCcH-HHhcCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999998 89999999999998 999999999999998 8889999999999999999999999999999
Q ss_pred HHHhc
Q 044542 457 FLRMK 461 (465)
Q Consensus 457 ~~~~~ 461 (465)
|++++
T Consensus 370 y~~~~ 374 (374)
T TIGR03088 370 YDQLL 374 (374)
T ss_pred HHHhC
Confidence 98763
No 8
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=8.1e-43 Score=342.41 Aligned_cols=344 Identities=22% Similarity=0.321 Sum_probs=261.2
Q ss_pred CChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC--cccCCcceEEEeecCC-C-c----------------c-ccC--
Q 044542 95 PGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN--DVHQGNLHVHFAANDH-G-S----------------V-NLN-- 151 (465)
Q Consensus 95 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~~~~~~~~v~~~~~~~-~-~----------------~-~~~-- 151 (465)
.||+++++.+|+++|.++||+|+|+|......... +.. .+..+....... . . + ...
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVA-PGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARH 97 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccC-CCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 59999999999999999999999999764322211 112 233333221110 0 0 0 001
Q ss_pred CCCCCcEEEecCCc--hhHHh---hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhh
Q 044542 152 NDGAFDYVHTESVS--LPHWR---AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFF 226 (465)
Q Consensus 152 ~~~~~DiI~~~~~~--~~~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (465)
...+||+||+|.+. ...++ ..++| ++.++|+..... ...... .. ...... ....+...+
T Consensus 98 ~~~~~Diih~h~~~~~~~~~~~~~~~~~p-~v~t~h~~~~~~--~~~~~~----~~----~~~~~~-----~~~~e~~~~ 161 (405)
T TIGR03449 98 EPGYYDLIHSHYWLSGQVGWLLRDRWGVP-LVHTAHTLAAVK--NAALAD----GD----TPEPEA-----RRIGEQQLV 161 (405)
T ss_pred cCCCCCeEEechHHHHHHHHHHHHhcCCC-EEEeccchHHHH--HHhccC----CC----CCchHH-----HHHHHHHHH
Confidence 23579999999742 12222 23567 999999875321 100000 00 000011 111233567
Q ss_pred cccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHH
Q 044542 227 SSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLY 306 (465)
Q Consensus 227 ~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll 306 (465)
+++|.++++|+...+.+.+.++.+.+++.+||||+|.+.|.+.+ ....++++++++++ .+++++|++.+.||++.++
T Consensus 162 ~~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~--~~~~~~~~~~~~~~-~~i~~~G~l~~~K~~~~li 238 (405)
T TIGR03449 162 DNADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGD--RATERARLGLPLDT-KVVAFVGRIQPLKAPDVLL 238 (405)
T ss_pred HhcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCc--HHHHHHhcCCCCCC-cEEEEecCCCcccCHHHHH
Confidence 89999999999999988887888889999999999998876542 34567778887665 6777999999999999999
Q ss_pred HHHHHhhhcCCC--eEEEEEeCC-----cchhHHHH----hc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcH
Q 044542 307 EAFSSITRDHPG--VYLLVAGTG-----PWGRRYAE----LG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDL 373 (465)
Q Consensus 307 ~a~~~l~~~~~~--~~l~ivG~g-----~~~~~~~~----l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~ 373 (465)
+|++.+.+++++ ++|+++|.+ +..+.+++ ++ ++|.|+|+++.+++.++|+.||++++||.. |++|+
T Consensus 239 ~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~-E~~g~ 317 (405)
T TIGR03449 239 RAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYN-ESFGL 317 (405)
T ss_pred HHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCC-CCcCh
Confidence 999999887776 999999952 23333433 23 689999999999999999999999999975 99999
Q ss_pred HHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 044542 374 TLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASA 452 (465)
Q Consensus 374 ~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 452 (465)
+++|||++|+|||+++.|+.+ +++.++.+|+++++ |+++++++|.+++++ ++.++++++++++.++ +|||+.++++
T Consensus 318 ~~lEAma~G~Pvi~~~~~~~~-e~i~~~~~g~~~~~~d~~~la~~i~~~l~~-~~~~~~~~~~~~~~~~-~fsw~~~~~~ 394 (405)
T TIGR03449 318 VAMEAQACGTPVVAARVGGLP-VAVADGETGLLVDGHDPADWADALARLLDD-PRTRIRMGAAAVEHAA-GFSWAATADG 394 (405)
T ss_pred HHHHHHHcCCCEEEecCCCcH-hhhccCCceEECCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH-hCCHHHHHHH
Confidence 999999999999999999998 88899999999998 999999999999998 8899999999999875 5999999999
Q ss_pred HHHHHHHhcC
Q 044542 453 YERFFLRMKN 462 (465)
Q Consensus 453 ~~~~~~~~~~ 462 (465)
+.++|.+++.
T Consensus 395 ~~~~y~~~~~ 404 (405)
T TIGR03449 395 LLSSYRDALA 404 (405)
T ss_pred HHHHHHHHhh
Confidence 9999998763
No 9
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.7e-42 Score=349.44 Aligned_cols=377 Identities=19% Similarity=0.228 Sum_probs=269.1
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCc--------------c----------
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHND--------------V---------- 131 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--------------~---------- 131 (465)
...+|||++|+.+..|-...||.+.++..|.++|++.||+|.|+++......... .
T Consensus 478 ~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 557 (977)
T PLN02939 478 TSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIW 557 (977)
T ss_pred CCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEE
Confidence 4567999999998755578999999999999999999999999999775432110 0
Q ss_pred --cCCcceEEEeecC-C-------CccccC-------------------CCCCCcEEEecCCchh---H-Hhh-------
Q 044542 132 --HQGNLHVHFAAND-H-------GSVNLN-------------------NDGAFDYVHTESVSLP---H-WRA------- 171 (465)
Q Consensus 132 --~~~~~~v~~~~~~-~-------~~~~~~-------------------~~~~~DiI~~~~~~~~---~-~~~------- 171 (465)
...+..++++... + ..+.+. ...+|||||+|.|... . +..
T Consensus 558 ~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~ 637 (977)
T PLN02939 558 TGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGF 637 (977)
T ss_pred EEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccC
Confidence 0011223333211 0 111111 2479999999998422 1 111
Q ss_pred hcCCcEEEEecchhHHHHhh-hhhhhhhhcCCCCCCC-chhhhh-hhhHHHHHHHHhhcccCEEEEeChhHHHHHHHH--
Q 044542 172 KMVPNVAVTWHGIWYEVMHS-KLFGELFSNQNGVLPG-SMTELQ-EAMPRLVDEIRFFSSYNQHICISNSAAEVLVKI-- 246 (465)
Q Consensus 172 ~~~p~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~-- 246 (465)
...+ .++++|+..+..... .....+ .- +.... ....+. ....++-..+..+-.+|.|+++|+..++.+...
T Consensus 638 ~~~k-tVfTIHNl~yQG~f~~~~l~~l-GL--~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G 713 (977)
T PLN02939 638 NSAR-ICFTCHNFEYQGTAPASDLASC-GL--DVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGG 713 (977)
T ss_pred CCCc-EEEEeCCCcCCCcCCHHHHHHc-CC--CHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhc
Confidence 1235 999999986432111 011100 00 00000 000000 000000001123446899999999999988753
Q ss_pred ------hCCCCCCEEEecCCCCCCCccCCcc-----------------cCcccccccCCCCC--CcEEEEEeeccccccC
Q 044542 247 ------YQLPQRNVHVILNGVDETKFVHDPE-----------------AGVRFPEKLGVPAN--VSLVMGVAGRLVRDKG 301 (465)
Q Consensus 247 ------~~~~~~ki~vi~ngvd~~~~~~~~~-----------------~~~~~r~~~g~~~~--~~~~l~~~Grl~~~Kg 301 (465)
++....++.+|+||||.+.|.|..+ .+..+++++|++.+ +..+|+++||+.++||
T Consensus 714 ~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKG 793 (977)
T PLN02939 714 RGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKG 793 (977)
T ss_pred cchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccC
Confidence 2446789999999999999987643 24568899999853 3477889999999999
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEEeCCcch---hHHHHh----c--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCc
Q 044542 302 HPLLYEAFSSITRDHPGVYLLVAGTGPWG---RRYAEL----G--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLD 372 (465)
Q Consensus 302 ~~~ll~a~~~l~~~~~~~~l~ivG~g~~~---~~~~~l----~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~ 372 (465)
++.+++|+..+.+ ++++|+|+|+|+.. +.++++ + ++|.|+|.++......+|+.||++|+||.+ |+||
T Consensus 794 iDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~-EPfG 870 (977)
T PLN02939 794 VHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMF-EPCG 870 (977)
T ss_pred hHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCc-cCCc
Confidence 9999999998865 47899999999653 333332 2 689999999877788999999999999986 9999
Q ss_pred HHHHHHHHcCCeEEecCCCCcceeeeee---------CCceEEeCC-CHHHHHHHHHHHHh---CChHHHHHHHHHHHHH
Q 044542 373 LTLIEAMHCGRTVLTPNYPSIVRTVVVN---------EELGYTFSP-NVKSFVEALELVIR---DGPKVLQRKGLACKEH 439 (465)
Q Consensus 373 ~~~~EAma~G~PvI~s~~gg~~~e~v~~---------~~~G~l~~~-d~~~la~~i~~ll~---~~~~~~~~~~~~~~~~ 439 (465)
++++|||+||+|+|++++||.. ++|.+ +.+|+++++ |+++++++|.+++. ++++.+++|++++.
T Consensus 871 LvqLEAMAyGtPPVVs~vGGL~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am-- 947 (977)
T PLN02939 871 LTQMIAMRYGSVPIVRKTGGLN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDM-- 947 (977)
T ss_pred HHHHHHHHCCCCEEEecCCCCc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHH--
Confidence 9999999999999999999998 77765 478999999 99999999998875 23888888887653
Q ss_pred HHhhCCHHHHHHHHHHHHHHhcCC
Q 044542 440 ALSMFTATKMASAYERFFLRMKNP 463 (465)
Q Consensus 440 ~~~~fs~~~~~~~~~~~~~~~~~~ 463 (465)
.++|||+.++++|+++|++++..
T Consensus 948 -~~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 948 -NIDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred -HhcCCHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999988653
No 10
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.7e-42 Score=341.56 Aligned_cols=354 Identities=18% Similarity=0.151 Sum_probs=246.4
Q ss_pred CCCCChHHHHHHHHHHHHHhCCc--EEEEEeCCCCCC----C---CCcccCCcceEEEeecCCCcc-------cc-----
Q 044542 92 GAAPGGMERHASTLYHALAARGH--EIHVFTAPSDRK----P---HNDVHQGNLHVHFAANDHGSV-------NL----- 150 (465)
Q Consensus 92 ~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~----~---~~~~~~~~~~v~~~~~~~~~~-------~~----- 150 (465)
+|..||+++++.+|+++|+++|| +|+|+|...... . ..+....+..+...+.....+ .+
T Consensus 22 ~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~ 101 (439)
T TIGR02472 22 DADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELA 101 (439)
T ss_pred CCCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHH
Confidence 36789999999999999999997 999999653221 0 111112333444443222111 01
Q ss_pred ------CC--CCCCcEEEecCCc--hhHH-h--hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhH
Q 044542 151 ------NN--DGAFDYVHTESVS--LPHW-R--AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMP 217 (465)
Q Consensus 151 ------~~--~~~~DiI~~~~~~--~~~~-~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (465)
.+ ..+|||||+|++. +... + ..++| ++.+.|+...... . ..... ......+ ...+....
T Consensus 102 ~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p-~V~t~H~~~~~~~-~----~~~~~-~~~~~~~-~~~~~~~~ 173 (439)
T TIGR02472 102 DNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVP-LIFTGHSLGREKR-R----RLLAA-GLKPQQI-EKQYNISR 173 (439)
T ss_pred HHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCC-EEEecccccchhh-h----hcccC-CCChhhh-hhhcchHH
Confidence 02 2479999999752 1111 1 23568 9999998532110 0 00000 0000000 01111222
Q ss_pred HHHHHHHhhcccCEEEEeChhHHH-HHHHHhCCCCCCEEEecCCCCCCCccCCcccCc--cc---ccccCCCCCCcEEEE
Q 044542 218 RLVDEIRFFSSYNQHICISNSAAE-VLVKIYQLPQRNVHVILNGVDETKFVHDPEAGV--RF---PEKLGVPANVSLVMG 291 (465)
Q Consensus 218 ~~~~~~~~~~~~d~ii~~S~~~~~-~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~--~~---r~~~g~~~~~~~~l~ 291 (465)
+...+...++.+|.++++|+.... .+....+++++|+.+||||+|.+.|.+...... .. +++++..+++ .+++
T Consensus 174 ~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 252 (439)
T TIGR02472 174 RIEAEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEK-PPIL 252 (439)
T ss_pred HHHHHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCC-cEEE
Confidence 222345678999999999876443 333333678899999999999998876432111 11 1234444454 5777
Q ss_pred EeeccccccCHHHHHHHHHHhhhcCCCeEE-EEEeCCcchhH---------------HHHh--cCCeEEcCCCChhHHHH
Q 044542 292 VAGRLVRDKGHPLLYEAFSSITRDHPGVYL-LVAGTGPWGRR---------------YAEL--GQNVKVLGALEAHQLSE 353 (465)
Q Consensus 292 ~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l-~ivG~g~~~~~---------------~~~l--~~~V~~~g~v~~~~~~~ 353 (465)
++||+.+.||++.+++|++.+.+..++.++ +++|+|+..+. .+++ .++|+|+|+++.+++.+
T Consensus 253 ~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~ 332 (439)
T TIGR02472 253 AISRPDRRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPE 332 (439)
T ss_pred EEcCCcccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHH
Confidence 999999999999999999875321122333 35787654211 1222 27899999999999999
Q ss_pred HHHhc----CeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHH
Q 044542 354 FYNAL----DVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKV 428 (465)
Q Consensus 354 ~~~~a----Dv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~ 428 (465)
+|+.| |++++||.+ |+||++++|||+||+|||+|+.||.+ |++.++.+|+++++ |+++++++|.+++++ ++.
T Consensus 333 ~~~~a~~~~Dv~v~pS~~-E~fg~~~lEAma~G~PvV~s~~gg~~-eiv~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~ 409 (439)
T TIGR02472 333 LYRLAARSRGIFVNPALT-EPFGLTLLEAAACGLPIVATDDGGPR-DIIANCRNGLLVDVLDLEAIASALEDALSD-SSQ 409 (439)
T ss_pred HHHHHhhcCCEEeccccc-CCcccHHHHHHHhCCCEEEeCCCCcH-HHhcCCCcEEEeCCCCHHHHHHHHHHHHhC-HHH
Confidence 99987 999999986 99999999999999999999999998 89999999999999 999999999999998 889
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 044542 429 LQRKGLACKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 429 ~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
+++|++++++++.++|||+.++++|.+++
T Consensus 410 ~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 410 WQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999999886
No 11
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3.2e-42 Score=340.28 Aligned_cols=372 Identities=19% Similarity=0.225 Sum_probs=263.6
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC--------ccc---C----------Cc
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN--------DVH---Q----------GN 135 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--------~~~---~----------~~ 135 (465)
|++|||++++.+.-+-...||...++..|.++|++.||+|.|+.+........ ... . .+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGG 80 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCC
Confidence 35799999998764447999999999999999999999999999976443210 010 0 11
Q ss_pred ceEEEeec-----CCC-cc------ccC---------------------CCCCCcEEEecCCc--h-hHHhh----hcCC
Q 044542 136 LHVHFAAN-----DHG-SV------NLN---------------------NDGAFDYVHTESVS--L-PHWRA----KMVP 175 (465)
Q Consensus 136 ~~v~~~~~-----~~~-~~------~~~---------------------~~~~~DiI~~~~~~--~-~~~~~----~~~p 175 (465)
..+.++.. +.+ .. .+. ...+|||||+|++. + +.++. .++|
T Consensus 81 v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~~~~~~ 160 (485)
T PRK14099 81 LDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSGRPAPG 160 (485)
T ss_pred ceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCCCCCCC
Confidence 22222211 111 11 011 14689999999863 2 22222 1346
Q ss_pred cEEEEecchhHHHHh-hhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHh-------
Q 044542 176 NVAVTWHGIWYEVMH-SKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIY------- 247 (465)
Q Consensus 176 ~~v~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~------- 247 (465)
.|.|+|+..+.... ......+... +...... .. .+.......+..+..+|.|+++|+..++.+++.+
T Consensus 161 -~V~TiHn~~~qg~~~~~~~~~~~~~--~~~~~~~-~~-~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~ 235 (485)
T PRK14099 161 -TVFTIHNLAFQGQFPRELLGALGLP--PSAFSLD-GV-EYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDG 235 (485)
T ss_pred -EEEeCCCCCCCCcCCHHHHHHcCCC--hHHcCch-hh-hhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHH
Confidence 99999997532110 0111000000 0000000 00 0000001122567899999999999999887532
Q ss_pred --CCCCCCEEEecCCCCCCCccCCccc-----------------CcccccccCCCCC-CcEEEEEeeccccccCHHHHHH
Q 044542 248 --QLPQRNVHVILNGVDETKFVHDPEA-----------------GVRFPEKLGVPAN-VSLVMGVAGRLVRDKGHPLLYE 307 (465)
Q Consensus 248 --~~~~~ki~vi~ngvd~~~~~~~~~~-----------------~~~~r~~~g~~~~-~~~~l~~~Grl~~~Kg~~~ll~ 307 (465)
+.+.+++.+|+||||.+.|.+.... +..+++++|++.+ ..++++++||+.++||++.+++
T Consensus 236 ~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~ 315 (485)
T PRK14099 236 LLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLE 315 (485)
T ss_pred HHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHH
Confidence 1246899999999999988775431 2457788999753 3477889999999999999999
Q ss_pred HHHHhhhcCCCeEEEEEeCCcc--hhHHHHh----cCCe-EEcCCCChhHHHHHH-HhcCeEEecccCCCCCcHHHHHHH
Q 044542 308 AFSSITRDHPGVYLLVAGTGPW--GRRYAEL----GQNV-KVLGALEAHQLSEFY-NALDVFVNPTLRPQGLDLTLIEAM 379 (465)
Q Consensus 308 a~~~l~~~~~~~~l~ivG~g~~--~~~~~~l----~~~V-~~~g~v~~~~~~~~~-~~aDv~v~ps~~~eg~~~~~~EAm 379 (465)
|+..+.+ .+++|+|+|+|+. ++.++++ ..++ .++|+ ++++..+| +.||++++||.+ |+||++++|||
T Consensus 316 A~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~--~~~l~~~~~a~aDifv~PS~~-E~fGl~~lEAm 390 (485)
T PRK14099 316 ALPTLLG--EGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGY--DEALAHLIQAGADALLVPSRF-EPCGLTQLCAL 390 (485)
T ss_pred HHHHHHh--cCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC--CHHHHHHHHhcCCEEEECCcc-CCCcHHHHHHH
Confidence 9999875 3789999999863 4455544 3455 68998 48888887 569999999986 99999999999
Q ss_pred HcCCeEEecCCCCcceeeeeeC---------CceEEeCC-CHHHHHHHHHH---HHhCChHHHHHHHHHHHHHHHhhCCH
Q 044542 380 HCGRTVLTPNYPSIVRTVVVNE---------ELGYTFSP-NVKSFVEALEL---VIRDGPKVLQRKGLACKEHALSMFTA 446 (465)
Q Consensus 380 a~G~PvI~s~~gg~~~e~v~~~---------~~G~l~~~-d~~~la~~i~~---ll~~~~~~~~~~~~~~~~~~~~~fs~ 446 (465)
+||+|+|++++||.+ |++.++ .+|+++++ |+++|+++|.+ ++++ ++.+++|+++++ .++|||
T Consensus 391 a~G~ppVvs~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d-~~~~~~l~~~~~---~~~fSw 465 (485)
T PRK14099 391 RYGAVPVVARVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFAD-PVAWRRLQRNGM---TTDVSW 465 (485)
T ss_pred HCCCCcEEeCCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHhh---hhcCCh
Confidence 999988889999998 777665 58999999 99999999997 6667 888999998886 367999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 044542 447 TKMASAYERFFLRMKNP 463 (465)
Q Consensus 447 ~~~~~~~~~~~~~~~~~ 463 (465)
++++++|+++|++++++
T Consensus 466 ~~~a~~y~~lY~~l~~~ 482 (485)
T PRK14099 466 RNPAQHYAALYRSLVAE 482 (485)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998754
No 12
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=7.2e-42 Score=330.79 Aligned_cols=334 Identities=16% Similarity=0.274 Sum_probs=259.8
Q ss_pred eEEEEe-CCCCCCC-CCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC------Cccc---
Q 044542 81 KLAVFS-KTWPIGA-APGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH------GSVN--- 149 (465)
Q Consensus 81 kIl~v~-~~~p~~~-~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~--- 149 (465)
||++++ +.+|.++ ..||+|+++..+++.|+. +|++++....+....+....+..+++..... +.|.
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLD 80 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccC
Confidence 666655 5676533 478999999999999943 9999999887644443444444454442211 1111
Q ss_pred ---cC----------CCCCCcEEEecCCchh-HHhhhcCC--cEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhh
Q 044542 150 ---LN----------NDGAFDYVHTESVSLP-HWRAKMVP--NVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQ 213 (465)
Q Consensus 150 ---~~----------~~~~~DiI~~~~~~~~-~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (465)
+. ...++|+||+|+.... ..+....| +++.++|+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~v~~~h~~~~~-------------------------- 134 (380)
T PRK15484 81 PLPYSQRILNIAHKFTITKDSVIVIHNSMKLYRQIRERAPQAKLVMHMHNAFEP-------------------------- 134 (380)
T ss_pred chhHHHHHHHHHHhcCCCCCcEEEEeCcHHhHHHHHhhCCCCCEEEEEecccCh--------------------------
Confidence 00 3467999999985422 22222222 388999963210
Q ss_pred hhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEe
Q 044542 214 EAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVA 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~ 293 (465)
..+.+++.++++|++.++.+.+. .+..++.+||||+|.+.|.+... ..++++++++.+. .+++++
T Consensus 135 ----------~~~~~~~~ii~~S~~~~~~~~~~--~~~~~i~vIpngvd~~~~~~~~~--~~~~~~~~~~~~~-~~il~~ 199 (380)
T PRK15484 135 ----------ELLDKNAKIIVPSQFLKKFYEER--LPNADISIVPNGFCLETYQSNPQ--PNLRQQLNISPDE-TVLLYA 199 (380)
T ss_pred ----------hHhccCCEEEEcCHHHHHHHHhh--CCCCCEEEecCCCCHHHcCCcch--HHHHHHhCCCCCC-eEEEEe
Confidence 22346789999999999998874 35678999999999887765432 3456778877665 677899
Q ss_pred eccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcch---------hHHH----HhcCCeEEcCCCChhHHHHHHHhcCe
Q 044542 294 GRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWG---------RRYA----ELGQNVKVLGALEAHQLSEFYNALDV 360 (465)
Q Consensus 294 Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~---------~~~~----~l~~~V~~~g~v~~~~~~~~~~~aDv 360 (465)
||+.+.||++.+++|++.+.+++|+++|+|+|+|+.. +.++ +++.+|.|+|+++++++..+|++||+
T Consensus 200 Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv 279 (380)
T PRK15484 200 GRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADL 279 (380)
T ss_pred ccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCE
Confidence 9999999999999999999988899999999987531 1222 33478999999999999999999999
Q ss_pred EEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceE-EeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 044542 361 FVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGY-TFSP-NVKSFVEALELVIRDGPKVLQRKGLACKE 438 (465)
Q Consensus 361 ~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~-l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~ 438 (465)
+++||.+.|+||++++|||+||+|||+++.||.+ |++.++.+|+ ++++ |+++++++|.+++++ ++. .++++++++
T Consensus 280 ~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~-Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d-~~~-~~~~~~ar~ 356 (380)
T PRK15484 280 VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGIT-EFVLEGITGYHLAEPMTSDSIISDINRTLAD-PEL-TQIAEQAKD 356 (380)
T ss_pred EEeCCCCccccccHHHHHHHcCCCEEEeCCCCcH-hhcccCCceEEEeCCCCHHHHHHHHHHHHcC-HHH-HHHHHHHHH
Confidence 9999976699999999999999999999999998 8999999998 4566 999999999999998 664 789999999
Q ss_pred HHHhhCCHHHHHHHHHHHHHHhc
Q 044542 439 HALSMFTATKMASAYERFFLRMK 461 (465)
Q Consensus 439 ~~~~~fs~~~~~~~~~~~~~~~~ 461 (465)
.+.++|+|++++++++++|++..
T Consensus 357 ~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 357 FVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred HHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998754
No 13
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=2.5e-42 Score=344.12 Aligned_cols=368 Identities=22% Similarity=0.257 Sum_probs=265.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCc-------------------------ccCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHND-------------------------VHQG 134 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------------------------~~~~ 134 (465)
|||++++.++++....||.+.++..|.++|+++||+|+|+++......... ....
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 799999998654467999999999999999999999999998765432210 0111
Q ss_pred cceEEEeecCC-----C-ccc--cC-------------------CCCCCcEEEecCCc--h-hHHhhh--c---CCcEEE
Q 044542 135 NLHVHFAANDH-----G-SVN--LN-------------------NDGAFDYVHTESVS--L-PHWRAK--M---VPNVAV 179 (465)
Q Consensus 135 ~~~v~~~~~~~-----~-~~~--~~-------------------~~~~~DiI~~~~~~--~-~~~~~~--~---~p~~v~ 179 (465)
+..+.+..... + .+. +. ...+|||||+|.+. + +.+++. + +| ++.
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~~~~~-~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRPNPIK-TVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccCCCCC-EEE
Confidence 22333322110 1 111 11 34689999999863 2 222222 1 56 999
Q ss_pred EecchhHHHHh-hhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHH-hC--------C
Q 044542 180 TWHGIWYEVMH-SKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKI-YQ--------L 249 (465)
Q Consensus 180 ~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~-~~--------~ 249 (465)
++|+..+.... ....... .. +... +.........+....+..+..+|.++++|+..++.+.+. ++ .
T Consensus 160 TiH~~~~~g~~~~~~~~~~-~~--~~~~-~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~ 235 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSEL-GL--PPEY-FHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKA 235 (473)
T ss_pred EcCCCccCCcCCHHHHHHc-CC--ChHH-cCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHh
Confidence 99987532100 0000000 00 0000 000000000011112356789999999999998887642 22 2
Q ss_pred CCCCEEEecCCCCCCCccCCcc-----------------cCcccccccCCCCC-CcEEEEEeeccccccCHHHHHHHHHH
Q 044542 250 PQRNVHVILNGVDETKFVHDPE-----------------AGVRFPEKLGVPAN-VSLVMGVAGRLVRDKGHPLLYEAFSS 311 (465)
Q Consensus 250 ~~~ki~vi~ngvd~~~~~~~~~-----------------~~~~~r~~~g~~~~-~~~~l~~~Grl~~~Kg~~~ll~a~~~ 311 (465)
++.++.+|+||+|.+.|.|..+ .+..+++++|++.+ +.++++++||+.++||++.+++|+.+
T Consensus 236 ~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 315 (473)
T TIGR02095 236 RSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPE 315 (473)
T ss_pred cCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHH
Confidence 3579999999999998876432 12347888898762 34778899999999999999999999
Q ss_pred hhhcCCCeEEEEEeCCc--chhHHHHhc----CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeE
Q 044542 312 ITRDHPGVYLLVAGTGP--WGRRYAELG----QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTV 385 (465)
Q Consensus 312 l~~~~~~~~l~ivG~g~--~~~~~~~l~----~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~Pv 385 (465)
+.++ +++|+|+|+|+ ..+.++++. .++.+.+..+.+++..+|++||++++||.+ |+||++++|||+||+||
T Consensus 316 l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~-E~~gl~~lEAma~G~pv 392 (473)
T TIGR02095 316 LLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRF-EPCGLTQLYAMRYGTVP 392 (473)
T ss_pred HHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCc-CCcHHHHHHHHHCCCCe
Confidence 9764 59999999984 344454443 678888888888899999999999999986 99999999999999999
Q ss_pred EecCCCCcceeeeeeC------CceEEeCC-CHHHHHHHHHHHHh----CChHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 044542 386 LTPNYPSIVRTVVVNE------ELGYTFSP-NVKSFVEALELVIR----DGPKVLQRKGLACKEHALSMFTATKMASAYE 454 (465)
Q Consensus 386 I~s~~gg~~~e~v~~~------~~G~l~~~-d~~~la~~i~~ll~----~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 454 (465)
|+++.||.. +++.++ .+|+++++ |+++++++|.+++. + ++.+++|++++. +++|||++++++|.
T Consensus 393 I~s~~gg~~-e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~-~~~~~~~~~~~~---~~~fsw~~~a~~~~ 467 (473)
T TIGR02095 393 IVRRTGGLA-DTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQD-PSLWEALQKNAM---SQDFSWDKSAKQYV 467 (473)
T ss_pred EEccCCCcc-ceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHh---ccCCCcHHHHHHHH
Confidence 999999998 888887 89999999 99999999999888 6 888888888775 46799999999999
Q ss_pred HHHHHh
Q 044542 455 RFFLRM 460 (465)
Q Consensus 455 ~~~~~~ 460 (465)
++|+++
T Consensus 468 ~~Y~~l 473 (473)
T TIGR02095 468 ELYRSL 473 (473)
T ss_pred HHHHhC
Confidence 999864
No 14
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.2e-41 Score=336.68 Aligned_cols=371 Identities=17% Similarity=0.211 Sum_probs=263.6
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC-----------cc--cCC---------
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN-----------DV--HQG--------- 134 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-----------~~--~~~--------- 134 (465)
.++|||++++.+.-+-...||...++..|.++|++.||+|.|+.+........ .. ...
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVK 82 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEE
Confidence 34599999998764347999999999999999999999999999976433210 00 000
Q ss_pred -------cceEEEee-----cCCCccc-------cC-------------------CCCCCcEEEecCCc---hhHHhh--
Q 044542 135 -------NLHVHFAA-----NDHGSVN-------LN-------------------NDGAFDYVHTESVS---LPHWRA-- 171 (465)
Q Consensus 135 -------~~~v~~~~-----~~~~~~~-------~~-------------------~~~~~DiI~~~~~~---~~~~~~-- 171 (465)
...+.++. .+.+.+. +. ...+|||||+|++. ++.++.
T Consensus 83 ~~~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~~ 162 (489)
T PRK14098 83 VTALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKTV 162 (489)
T ss_pred EecccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHH
Confidence 01111111 0001111 11 24689999999863 222232
Q ss_pred -------hcCCcEEEEecchhHHHHh-hhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHH
Q 044542 172 -------KMVPNVAVTWHGIWYEVMH-SKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVL 243 (465)
Q Consensus 172 -------~~~p~~v~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~ 243 (465)
.++| +|.++|+....... ...+... . +. .............-..+..+..+|.|+++|+..++.+
T Consensus 163 ~~~~~~~~~~~-~V~TiHn~~~qg~~~~~~~~~~--~--~~--~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei 235 (489)
T PRK14098 163 YADHEFFKDIK-TVLTIHNVYRQGVLPFKVFQKL--L--PE--EVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEI 235 (489)
T ss_pred hhhccccCCCC-EEEEcCCCcccCCCCHHHHHHh--C--CH--HhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHh
Confidence 1467 99999986432100 0000000 0 00 0000000000001112255688999999999999988
Q ss_pred HHH----hCCC------CCCEEEecCCCCCCCccCCccc-----------------CcccccccCCCCC-CcEEEEEeec
Q 044542 244 VKI----YQLP------QRNVHVILNGVDETKFVHDPEA-----------------GVRFPEKLGVPAN-VSLVMGVAGR 295 (465)
Q Consensus 244 ~~~----~~~~------~~ki~vi~ngvd~~~~~~~~~~-----------------~~~~r~~~g~~~~-~~~~l~~~Gr 295 (465)
++. +|++ ..++.+|+||||.+.|.|.... +..+++++|++.+ +.++++++||
T Consensus 236 ~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgR 315 (489)
T PRK14098 236 AGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIIN 315 (489)
T ss_pred CcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEecc
Confidence 752 3443 6799999999999998875421 2345667788643 3478889999
Q ss_pred cccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcc--hhHHHHh----cCCeEEcCCCChhHHHHHHHhcCeEEecccCCC
Q 044542 296 LVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPW--GRRYAEL----GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQ 369 (465)
Q Consensus 296 l~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~~~~l----~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~e 369 (465)
+.++||++.+++|+.++.+ ++++|+|+|+|+. ++.++++ .++|.+.|.++++++..+|++||++++||.. |
T Consensus 316 l~~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~-E 392 (489)
T PRK14098 316 FDDFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMPGKI-E 392 (489)
T ss_pred ccccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeCCCC-C
Confidence 9999999999999999976 4799999999874 3445443 4789999999999999999999999999976 9
Q ss_pred CCcHHHHHHHHcCCeEEecCCCCcceeeeee----CCceEEeCC-CHHHHHHHHHHHH---hCChHHHHHHHHHHHHHHH
Q 044542 370 GLDLTLIEAMHCGRTVLTPNYPSIVRTVVVN----EELGYTFSP-NVKSFVEALELVI---RDGPKVLQRKGLACKEHAL 441 (465)
Q Consensus 370 g~~~~~~EAma~G~PvI~s~~gg~~~e~v~~----~~~G~l~~~-d~~~la~~i~~ll---~~~~~~~~~~~~~~~~~~~ 441 (465)
+||++.+|||+||+|+|++++||.. |.+.+ +.+|+++++ |+++++++|.+++ ++ ++.++++++++ ++
T Consensus 393 ~~Gl~~lEAma~G~ppVv~~~GGl~-d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~-~~~~~~~~~~~---~~ 467 (489)
T PRK14098 393 SCGMLQMFAMSYGTIPVAYAGGGIV-ETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHD-EERWEELVLEA---ME 467 (489)
T ss_pred CchHHHHHHHhCCCCeEEecCCCCc-eeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHHH---hc
Confidence 9999999999999999999999998 66654 679999999 9999999999865 45 67777776654 45
Q ss_pred hhCCHHHHHHHHHHHHHHhcC
Q 044542 442 SMFTATKMASAYERFFLRMKN 462 (465)
Q Consensus 442 ~~fs~~~~~~~~~~~~~~~~~ 462 (465)
++|||++++++|+++|+++++
T Consensus 468 ~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 468 RDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred CCCChHHHHHHHHHHHHHHhc
Confidence 779999999999999998864
No 15
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=3.8e-41 Score=328.94 Aligned_cols=349 Identities=24% Similarity=0.336 Sum_probs=262.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCc--c-cc------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGS--V-NL------ 150 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~-~~------ 150 (465)
|||++++..||+ ...||.++++.+++++|.+. ++|+|++....... ..+..+......... . ..
T Consensus 1 mkI~~i~~~~~p-~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (388)
T TIGR02149 1 MKVTVLTREYPP-NVYGGAGVHVEELTRELARL-MDVDVRCFGDQRFD-----SEGLTVKGYRPWSELKEANKALGTFSV 73 (388)
T ss_pred CeeEEEecccCc-cccccHhHHHHHHHHHHHHh-cCeeEEcCCCchhc-----CCCeEEEEecChhhccchhhhhhhhhH
Confidence 799999999874 34599999999999999987 77777776543211 112222211111000 0 00
Q ss_pred -----CCCCCCcEEEecCCch--hHHh---hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHH
Q 044542 151 -----NNDGAFDYVHTESVSL--PHWR---AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLV 220 (465)
Q Consensus 151 -----~~~~~~DiI~~~~~~~--~~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (465)
....++|+||+|++.. ..++ ..++| ++.++|+...... +.... .... ..+..++
T Consensus 74 ~~~~~~~~~~~divh~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~---~~~~~------~~~~--~~~~~~~---- 137 (388)
T TIGR02149 74 DLAMANDPVDADVVHSHTWYTFLAGHLAKKLYDKP-LVVTAHSLEPLRP---WKEEQ------LGGG--YKLSSWA---- 137 (388)
T ss_pred HHHHhhCCCCCCeEeecchhhhhHHHHHHHhcCCC-EEEEeeccccccc---ccccc------cccc--hhHHHHH----
Confidence 0345799999997532 2222 23567 9999998642110 00000 0000 0111222
Q ss_pred HHHHhhcccCEEEEeChhHHHHHHHHh-CCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccc
Q 044542 221 DEIRFFSSYNQHICISNSAAEVLVKIY-QLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRD 299 (465)
Q Consensus 221 ~~~~~~~~~d~ii~~S~~~~~~~~~~~-~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~ 299 (465)
+...++.+|.++++|+.+++.+.+.+ +++..++.++|||+|.+.+.+.. ....+++++++++. .+++++||+.+.
T Consensus 138 -~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~--~~~~~~~~~~~~~~-~~i~~~Grl~~~ 213 (388)
T TIGR02149 138 -EKTAIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDD--GNVVLDRYGIDRSR-PYILFVGRITRQ 213 (388)
T ss_pred -HHHHHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCc--hHHHHHHhCCCCCc-eEEEEEcccccc
Confidence 23667899999999999999998877 67778999999999998876542 24567788887665 677899999999
Q ss_pred cCHHHHHHHHHHhhhcCCCeEEEEEeCCcch----hHHHH----hc---CCeEEc-CCCChhHHHHHHHhcCeEEecccC
Q 044542 300 KGHPLLYEAFSSITRDHPGVYLLVAGTGPWG----RRYAE----LG---QNVKVL-GALEAHQLSEFYNALDVFVNPTLR 367 (465)
Q Consensus 300 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~----~~~~~----l~---~~V~~~-g~v~~~~~~~~~~~aDv~v~ps~~ 367 (465)
||++.+++|++++. ++++++++|+|+.. +.+++ +. ++|.+. |.++.+++..+|+.||++++||.+
T Consensus 214 Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~ 290 (388)
T TIGR02149 214 KGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIY 290 (388)
T ss_pred cCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCcc
Confidence 99999999999985 36789998876542 22222 22 346664 678999999999999999999976
Q ss_pred CCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CH------HHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 044542 368 PQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NV------KSFVEALELVIRDGPKVLQRKGLACKEHA 440 (465)
Q Consensus 368 ~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~------~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 440 (465)
|++|++++|||++|+|||+++.|+.+ |++.++.+|+++++ |+ ++++++|.+++++ ++.+++|++++++.+
T Consensus 291 -e~~g~~~lEA~a~G~PvI~s~~~~~~-e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~a~~~~ 367 (388)
T TIGR02149 291 -EPLGIVNLEAMACGTPVVASATGGIP-EVVVDGETGFLVPPDNSDADGFQAELAKAINILLAD-PELAKKMGIAGRKRA 367 (388)
T ss_pred -CCCChHHHHHHHcCCCEEEeCCCCHH-HHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 89999999999998 87 9999999999998 899999999999999
Q ss_pred HhhCCHHHHHHHHHHHHHHhc
Q 044542 441 LSMFTATKMASAYERFFLRMK 461 (465)
Q Consensus 441 ~~~fs~~~~~~~~~~~~~~~~ 461 (465)
.++|||+.+++++.++|++++
T Consensus 368 ~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 368 EEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHhCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999764
No 16
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.4e-41 Score=327.30 Aligned_cols=340 Identities=23% Similarity=0.347 Sum_probs=260.4
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecC------CCc------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAAND------HGS------ 147 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~------ 147 (465)
|||++++. +..||+++++.+++++|.+.||+|+|++.......... .....+...... ...
T Consensus 1 mki~~~~~-----p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (371)
T cd04962 1 MKIGIVCY-----PTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY--SPNIFFHEVEVPQYPLFQYPPYDLALA 73 (371)
T ss_pred CceeEEEE-----eCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh--ccCeEEEEecccccchhhcchhHHHHH
Confidence 79999984 36799999999999999999999999997643211111 111111111100 000
Q ss_pred ---cccCCCCCCcEEEecCCc---hhHHhh------hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhh
Q 044542 148 ---VNLNNDGAFDYVHTESVS---LPHWRA------KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEA 215 (465)
Q Consensus 148 ---~~~~~~~~~DiI~~~~~~---~~~~~~------~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (465)
.+..++.+||+||+|.+. ...++. .++| +++++|+........ . .....
T Consensus 74 ~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~----------~--------~~~~~ 134 (371)
T cd04962 74 SKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLP-VVTTLHGTDITLVGQ----------D--------PSFQP 134 (371)
T ss_pred HHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCc-EEEEEcCCccccccc----------c--------ccchH
Confidence 011167799999998642 122222 1567 899999753211000 0 00111
Q ss_pred hHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeec
Q 044542 216 MPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGR 295 (465)
Q Consensus 216 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Gr 295 (465)
+ .+..++++|.++++|+..++.+.+.++ ...++.++|||+|...+.+... ...+++++++++. .+++++|+
T Consensus 135 ~-----~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~~i~vi~n~~~~~~~~~~~~--~~~~~~~~~~~~~-~~il~~g~ 205 (371)
T cd04962 135 A-----TRFSIEKSDGVTAVSESLRQETYELFD-ITKEIEVIPNFVDEDRFRPKPD--EALKRRLGAPEGE-KVLIHISN 205 (371)
T ss_pred H-----HHHHHhhCCEEEEcCHHHHHHHHHhcC-CcCCEEEecCCcCHhhcCCCch--HHHHHhcCCCCCC-eEEEEecc
Confidence 1 125568899999999999999988654 4678999999999877655432 3345667777666 67789999
Q ss_pred cccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh----c--CCeEEcCCCChhHHHHHHHhcCeEEecccCCC
Q 044542 296 LVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL----G--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQ 369 (465)
Q Consensus 296 l~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l----~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~e 369 (465)
+.+.||++.+++|+..+.++ ++++++++|.|+..+.++++ + ++|.|.|+. +++.++|+.||++++||.. |
T Consensus 206 l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~v~ps~~-E 281 (371)
T cd04962 206 FRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQ--DHVEELLSIADLFLLPSEK-E 281 (371)
T ss_pred cccccCHHHHHHHHHHHHhc-CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCc--ccHHHHHHhcCEEEeCCCc-C
Confidence 99999999999999998766 56899999999876655443 2 689999987 6899999999999999975 9
Q ss_pred CCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHH
Q 044542 370 GLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATK 448 (465)
Q Consensus 370 g~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~ 448 (465)
++|++++|||++|+|||+++.|+.+ +++.++.+|+++++ |+++++++|.+++++ ++.+.+|++++++.+.++|+|+.
T Consensus 282 ~~~~~~~EAma~g~PvI~s~~~~~~-e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~fs~~~ 359 (371)
T cd04962 282 SFGLAALEAMACGVPVVASNAGGIP-EVVKHGETGFLVDVGDVEAMAEYALSLLED-DELWQEFSRAARNRAAERFDSER 359 (371)
T ss_pred CCccHHHHHHHcCCCEEEeCCCCch-hhhcCCCceEEcCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999998 89999999999999 999999999999998 89999999999999888899999
Q ss_pred HHHHHHHHHHHh
Q 044542 449 MASAYERFFLRM 460 (465)
Q Consensus 449 ~~~~~~~~~~~~ 460 (465)
++++|.++|+++
T Consensus 360 ~~~~~~~~y~~~ 371 (371)
T cd04962 360 IVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHHHhC
Confidence 999999999864
No 17
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1.2e-40 Score=325.92 Aligned_cols=348 Identities=21% Similarity=0.227 Sum_probs=256.7
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCC-CcccCCcceEEEeec--CCCccc-------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPH-NDVHQGNLHVHFAAN--DHGSVN------- 149 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-~~~~~~~~~v~~~~~--~~~~~~------- 149 (465)
|||+++++.+ ..||+++++..|+++|.++||+|+++|........ .+...+...++.... ....+.
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 76 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCA 76 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHH
Confidence 7999999875 57999999999999999999999999975432211 122222233333211 111110
Q ss_pred ------------cCCCCCCcEEEecCCchhHHhh---hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhh
Q 044542 150 ------------LNNDGAFDYVHTESVSLPHWRA---KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQE 214 (465)
Q Consensus 150 ------------~~~~~~~DiI~~~~~~~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (465)
.....++|+||+++......+. ...| +++..|...... .. ...+...++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~--~~------------~~~~~~~~~~ 141 (392)
T cd03805 77 YLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLLKLFSPSK-ILFYCHFPDQLL--AQ------------RGSLLKRLYR 141 (392)
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHHHHhcCCc-EEEEEecChHHh--cC------------CCcHHHHHHH
Confidence 1256789999998754332221 1234 888888432110 00 0001111111
Q ss_pred hhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCC-CEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEe
Q 044542 215 AMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQR-NVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVA 293 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~-ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~ 293 (465)
...+ ..+...++.+|.++++|+..++.+.+.++.... ++.+|+||+|.+.+.+..... .++....+++. ++++++
T Consensus 142 ~~~~-~~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~--~~~~~~~~~~~-~~i~~~ 217 (392)
T cd03805 142 KPFD-WLEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDP--DPGLLIPKSGK-KTFLSI 217 (392)
T ss_pred HHHH-HHHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccc--cccccccCCCc-eEEEEE
Confidence 1111 123467899999999999999999887754333 346999999998776543321 22333334444 788899
Q ss_pred eccccccCHHHHHHHHHHhhhcC---CCeEEEEEeCCcch--------hHH----HH-h--cCCeEEcCCCChhHHHHHH
Q 044542 294 GRLVRDKGHPLLYEAFSSITRDH---PGVYLLVAGTGPWG--------RRY----AE-L--GQNVKVLGALEAHQLSEFY 355 (465)
Q Consensus 294 Grl~~~Kg~~~ll~a~~~l~~~~---~~~~l~ivG~g~~~--------~~~----~~-l--~~~V~~~g~v~~~~~~~~~ 355 (465)
||+.+.||++.+++|++++.+++ ++++|+++|+|+.+ +.+ ++ + .++|.|+|+++.+++..+|
T Consensus 218 grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l 297 (392)
T cd03805 218 NRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLL 297 (392)
T ss_pred eeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHH
Confidence 99999999999999999998886 79999999987542 222 23 2 3789999999999999999
Q ss_pred HhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHH
Q 044542 356 NALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLA 435 (465)
Q Consensus 356 ~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~ 435 (465)
+.||++++||.. |+||++++|||+||+|||+++.||.. +++.++.+|+++++|+++++++|.+++++ ++.+++++++
T Consensus 298 ~~ad~~l~~s~~-E~~g~~~lEAma~G~PvI~s~~~~~~-e~i~~~~~g~~~~~~~~~~a~~i~~l~~~-~~~~~~~~~~ 374 (392)
T cd03805 298 SSARALLYTPSN-EHFGIVPLEAMYAGKPVIACNSGGPL-ETVVDGETGFLCEPTPEEFAEAMLKLAND-PDLADRMGAA 374 (392)
T ss_pred hhCeEEEECCCc-CCCCchHHHHHHcCCCEEEECCCCcH-HHhccCCceEEeCCCHHHHHHHHHHHHhC-hHHHHHHHHH
Confidence 999999999975 99999999999999999999999988 88889899999977999999999999999 8889999999
Q ss_pred HHHHHHhhCCHHHHHHHH
Q 044542 436 CKEHALSMFTATKMASAY 453 (465)
Q Consensus 436 ~~~~~~~~fs~~~~~~~~ 453 (465)
++++++++|||+.+++++
T Consensus 375 a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 375 GRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHhcCHHHHhhhC
Confidence 999999999999998764
No 18
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.1e-40 Score=325.77 Aligned_cols=347 Identities=19% Similarity=0.252 Sum_probs=249.8
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC---CccccC------
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH---GSVNLN------ 151 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~------ 151 (465)
|||+|+.+||. ....|+++|.++||+|+++|......... +...+++..... +.+.+.
T Consensus 1 ~il~~~~~~p~---------~~~~la~~L~~~G~~v~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (396)
T cd03818 1 RILFVHQNFPG---------QFRHLAPALAAQGHEVVFLTEPNAAPPPG----GVRVVRYRPPRGPTSGTHPYLREFEEA 67 (396)
T ss_pred CEEEECCCCch---------hHHHHHHHHHHCCCEEEEEecCCCCCCCC----CeeEEEecCCCCCCCCCCccchhHHHH
Confidence 69999999972 15679999999999999999887644322 222222222111 111111
Q ss_pred ----------------CCCCCcEEEecCCch-hHHhhh---cCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhh
Q 044542 152 ----------------NDGAFDYVHTESVSL-PHWRAK---MVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTE 211 (465)
Q Consensus 152 ----------------~~~~~DiI~~~~~~~-~~~~~~---~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (465)
+..+||+||+|.... ...+.. ..| ++...|-.... ...+.. . . . ...... ..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~-~v~~~~~~~~~-~~~~~~--~-~-~-~~~~~~-~~ 139 (396)
T cd03818 68 VLRGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAP-LIGYFEFYYRA-EGADVG--F-D-P-EFPPSL-DD 139 (396)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCC-EEEEEeeeecC-CCCCCC--C-C-C-CCCCch-hH
Confidence 456899999997532 222222 345 55554421100 000000 0 0 0 000000 00
Q ss_pred hhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEE
Q 044542 212 LQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMG 291 (465)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~ 291 (465)
..+...+.......++.+|.+|++|++.++.+.+.+ .+++.+||||+|.+.|.+.+......+...++.++. .+++
T Consensus 140 ~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~---~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~-~~i~ 215 (396)
T cd03818 140 ALRLRNRNALILLALAQADAGVSPTRWQRSTFPAEL---RSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGD-EVIT 215 (396)
T ss_pred HHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcHhh---ccceEEeCCCccccccCCCchhhhcccccccCCCCC-eEEE
Confidence 011111111122568899999999999999887755 379999999999998877654333333333344444 6777
Q ss_pred Eeec-cccccCHHHHHHHHHHhhhcCCCeEEEEEeCCc------------ch-hHHHHhc-----CCeEEcCCCChhHHH
Q 044542 292 VAGR-LVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGP------------WG-RRYAELG-----QNVKVLGALEAHQLS 352 (465)
Q Consensus 292 ~~Gr-l~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~------------~~-~~~~~l~-----~~V~~~g~v~~~~~~ 352 (465)
|+|| +.+.||++.+++|++.+.++.|+++|+|+|++. +. +.+++++ ++|+|+|+++++++.
T Consensus 216 ~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~ 295 (396)
T cd03818 216 FVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYL 295 (396)
T ss_pred EECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHH
Confidence 9997 999999999999999998888999999999732 11 1233332 689999999999999
Q ss_pred HHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHH
Q 044542 353 EFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQR 431 (465)
Q Consensus 353 ~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~ 431 (465)
.+|+.||++++||. .|++|++++||||||+|||+++.|+.. |++.++.+|+++++ |+++++++|.+++++ ++.+++
T Consensus 296 ~~l~~adv~v~~s~-~e~~~~~llEAmA~G~PVIas~~~g~~-e~i~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~ 372 (396)
T cd03818 296 ALLQVSDVHVYLTY-PFVLSWSLLEAMACGCLVVGSDTAPVR-EVITDGENGLLVDFFDPDALAAAVIELLDD-PARRAR 372 (396)
T ss_pred HHHHhCcEEEEcCc-ccccchHHHHHHHCCCCEEEcCCCCch-hhcccCCceEEcCCCCHHHHHHHHHHHHhC-HHHHHH
Confidence 99999999999997 499999999999999999999999998 89999999999998 999999999999999 899999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHH
Q 044542 432 KGLACKEHALSMFTATKMASAYER 455 (465)
Q Consensus 432 ~~~~~~~~~~~~fs~~~~~~~~~~ 455 (465)
|+++++++++++|||+.++++|++
T Consensus 373 l~~~ar~~~~~~fs~~~~~~~~~~ 396 (396)
T cd03818 373 LRRAARRTALRYDLLSVCLPRQLA 396 (396)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhC
Confidence 999999999999999999998863
No 19
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=8.6e-40 Score=334.94 Aligned_cols=373 Identities=14% Similarity=0.119 Sum_probs=264.6
Q ss_pred CCCceeEEEEeC-CCC--------CCCCCChHHHHHHHHHHHHHhCC--cEEEEEeCCCCCCCC-------Cc-c-----
Q 044542 76 TFEKLKLAVFSK-TWP--------IGAAPGGMERHASTLYHALAARG--HEIHVFTAPSDRKPH-------ND-V----- 131 (465)
Q Consensus 76 ~~~~mkIl~v~~-~~p--------~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~-------~~-~----- 131 (465)
..++|.|++|+. .++ -++..||...|+.+|+++|++.| |+|+++|........ .+ +
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~ 245 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSS 245 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccc
Confidence 456789999984 332 13577999999999999999998 899999987653210 00 0
Q ss_pred --------cCCcceEEEee-cCCC-------ccccC-----------CC--------------CCCcEEEecCCc--hhH
Q 044542 132 --------HQGNLHVHFAA-NDHG-------SVNLN-----------ND--------------GAFDYVHTESVS--LPH 168 (465)
Q Consensus 132 --------~~~~~~v~~~~-~~~~-------~~~~~-----------~~--------------~~~DiI~~~~~~--~~~ 168 (465)
...+..+..++ .... .|.+. .+ ..||+||+|.+. ...
T Consensus 246 ~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa 325 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSA 325 (1050)
T ss_pred ccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHH
Confidence 11133332222 2211 12111 11 149999999762 222
Q ss_pred H-h--hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHH
Q 044542 169 W-R--AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVK 245 (465)
Q Consensus 169 ~-~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~ 245 (465)
+ + ..++| +|.+.|....... ..+..... ....-....+....++..|...+..||.||+.|...++.+..
T Consensus 326 ~~L~~~lgVP-~V~T~HSLgr~K~-----~~ll~~g~-~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~ 398 (1050)
T TIGR02468 326 ALLSGALNVP-MVLTGHSLGRDKL-----EQLLKQGR-MSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWG 398 (1050)
T ss_pred HHHHHhhCCC-EEEECccchhhhh-----hhhccccc-ccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHH
Confidence 2 2 23679 9999997532111 00000000 000000011223344445668899999999999999987666
Q ss_pred HhC-CC---------------------CCCEEEecCCCCCCCccCCcccCc-------------------ccccccCCCC
Q 044542 246 IYQ-LP---------------------QRNVHVILNGVDETKFVHDPEAGV-------------------RFPEKLGVPA 284 (465)
Q Consensus 246 ~~~-~~---------------------~~ki~vi~ngvd~~~~~~~~~~~~-------------------~~r~~~g~~~ 284 (465)
.|+ .+ ..++.|||||+|++.|.+...... .++ ++..++
T Consensus 399 lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~-r~~~~p 477 (1050)
T TIGR02468 399 LYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIM-RFFTNP 477 (1050)
T ss_pred HhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHH-hhcccC
Confidence 664 12 349999999999999987432110 111 122334
Q ss_pred CCcEEEEEeeccccccCHHHHHHHHHHhhhc--CCCeEEEEEeCCcchh-----------HH----HHhc--CCeEEcCC
Q 044542 285 NVSLVMGVAGRLVRDKGHPLLYEAFSSITRD--HPGVYLLVAGTGPWGR-----------RY----AELG--QNVKVLGA 345 (465)
Q Consensus 285 ~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~--~~~~~l~ivG~g~~~~-----------~~----~~l~--~~V~~~g~ 345 (465)
+. .+|+++||+.+.||++.+++|+..+.+. .+++. +|+|.++..+ .+ ++++ ++|.|.|+
T Consensus 478 dk-pvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~ 555 (1050)
T TIGR02468 478 RK-PMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKH 555 (1050)
T ss_pred CC-cEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCC
Confidence 44 5677999999999999999999998753 24665 4678764321 12 2222 88999999
Q ss_pred CChhHHHHHHHhc----CeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHH
Q 044542 346 LEAHQLSEFYNAL----DVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALEL 420 (465)
Q Consensus 346 v~~~~~~~~~~~a----Dv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ 420 (465)
++.+++..+|+.| |++|+||.+ |+||++++||||||+|||+|+.||.. +++.++.+|+++++ |+++|+++|.+
T Consensus 556 v~~edvp~lYr~Ad~s~DVFV~PS~~-EgFGLvlLEAMAcGlPVVASdvGG~~-EII~~g~nGlLVdP~D~eaLA~AL~~ 633 (1050)
T TIGR02468 556 HKQSDVPDIYRLAAKTKGVFINPAFI-EPFGLTLIEAAAHGLPMVATKNGGPV-DIHRVLDNGLLVDPHDQQAIADALLK 633 (1050)
T ss_pred CCHHHHHHHHHHhhhcCCeeeCCccc-CCCCHHHHHHHHhCCCEEEeCCCCcH-HHhccCCcEEEECCCCHHHHHHHHHH
Confidence 9999999999988 699999986 99999999999999999999999998 89999999999999 99999999999
Q ss_pred HHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcC
Q 044542 421 VIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRMKN 462 (465)
Q Consensus 421 ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 462 (465)
++.+ ++.+++|++++++.+++ |+|+.++++|++.+..+..
T Consensus 634 LL~D-pelr~~m~~~gr~~v~~-FSWe~ia~~yl~~i~~~~~ 673 (1050)
T TIGR02468 634 LVAD-KQLWAECRQNGLKNIHL-FSWPEHCKTYLSRIASCRP 673 (1050)
T ss_pred HhhC-HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHhc
Confidence 9998 89999999999999865 9999999999999987653
No 20
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=9.5e-40 Score=316.44 Aligned_cols=353 Identities=17% Similarity=0.126 Sum_probs=242.4
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC--------------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH-------------- 145 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------- 145 (465)
||||+|...+ ..||+|+.+.+|++.|.++||+|.++..........+.......+.......
T Consensus 1 mkil~i~~~l----~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (405)
T PRK10125 1 MNILQFNVRL----AEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNR 76 (405)
T ss_pred CeEEEEEeee----cCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcch
Confidence 8999999864 7799999999999999999999999998865544332222211111111000
Q ss_pred -Cc------cccC-CCCCCcEEEecCCc-----hhH---------HhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCC-
Q 044542 146 -GS------VNLN-NDGAFDYVHTESVS-----LPH---------WRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQN- 202 (465)
Q Consensus 146 -~~------~~~~-~~~~~DiI~~~~~~-----~~~---------~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~- 202 (465)
+. .+.. +..+|||||+|... +.. ....++| +|+|+||+|..+.+..+...+.+...
T Consensus 77 ~~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~p-iV~TlHd~~~~tg~c~~~~~C~~~~~~ 155 (405)
T PRK10125 77 DLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVT-LVWTLHDHWSVTGRCAFTDGCEGWKTG 155 (405)
T ss_pred hhcchHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCC-EEEecccccccCCCcCCCccccccccc
Confidence 00 0111 57799999999642 211 1112457 99999999977655554333322111
Q ss_pred -CCCCC---c-------hhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcc
Q 044542 203 -GVLPG---S-------MTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPE 271 (465)
Q Consensus 203 -~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~ 271 (465)
...+. + .........+.. ...++.++.+|++|+++++.+.+.++ ..++.+||||+|++.+.+.+.
T Consensus 156 c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~--~~~~~~~~~iV~~S~~l~~~~~~~~~--~~~i~vI~NGid~~~~~~~~~ 231 (405)
T PRK10125 156 CQKCPTLNNYPPVKVDRAHQLVAGKRQLF--REMLALGCQFISPSQHVADAFNSLYG--PGRCRIINNGIDMATEAILAE 231 (405)
T ss_pred CCCCCCccCCCCCccchHHHHHHHHHHHH--HHHhhcCcEEEEcCHHHHHHHHHHcC--CCCEEEeCCCcCccccccccc
Confidence 11111 1 111111111111 13345678999999999999887655 479999999999754322211
Q ss_pred cCcccccccCCCCCCcEEEEEeecc--ccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCC-Ch
Q 044542 272 AGVRFPEKLGVPANVSLVMGVAGRL--VRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGAL-EA 348 (465)
Q Consensus 272 ~~~~~r~~~g~~~~~~~~l~~~Grl--~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v-~~ 348 (465)
. ...+. ++++ .+++++|+. .+.||++.+++|+..+. ++++|+++|.|+... .++|.++|+. +.
T Consensus 232 ~-~~~~~----~~~~-~~il~v~~~~~~~~Kg~~~li~A~~~l~---~~~~L~ivG~g~~~~-----~~~v~~~g~~~~~ 297 (405)
T PRK10125 232 L-PPVRE----TQGK-PKIAVVAHDLRYDGKTDQQLVREMMALG---DKIELHTFGKFSPFT-----AGNVVNHGFETDK 297 (405)
T ss_pred c-ccccc----CCCC-CEEEEEEeccccCCccHHHHHHHHHhCC---CCeEEEEEcCCCccc-----ccceEEecCcCCH
Confidence 1 11111 2233 567789984 36899999999999873 479999999875422 3678999987 56
Q ss_pred hHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChH
Q 044542 349 HQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPK 427 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~ 427 (465)
+++.++|++||++|+||.+ ||||++++||||||+|||+|++||++ |++.++ +|+++++ |+++|++.+...+.+ .
T Consensus 298 ~~l~~~y~~aDvfV~pS~~-Egfp~vilEAmA~G~PVVat~~gG~~-Eiv~~~-~G~lv~~~d~~~La~~~~~~~~~-~- 372 (405)
T PRK10125 298 RKLMSALNQMDALVFSSRV-DNYPLILCEALSIGVPVIATHSDAAR-EVLQKS-GGKTVSEEEVLQLAQLSKPEIAQ-A- 372 (405)
T ss_pred HHHHHHHHhCCEEEECCcc-ccCcCHHHHHHHcCCCEEEeCCCChH-HhEeCC-cEEEECCCCHHHHHhccCHHHHH-H-
Confidence 7899999999999999986 99999999999999999999999998 777664 8999999 999999864322221 1
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 428 VLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 428 ~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
...++.+++++++.+.||++.++++|+++|+++
T Consensus 373 ~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 373 VFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred hhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 011123568888889999999999999999864
No 21
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=1.8e-39 Score=314.44 Aligned_cols=347 Identities=23% Similarity=0.270 Sum_probs=263.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCccccCCCCCCcEE
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSVNLNNDGAFDYV 159 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~DiI 159 (465)
|||++++.. ...||.++++..++++|.++||+|++++.... .........+||+|
T Consensus 1 MkIl~~~~~----~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~---------------------~~~~~~~~~~~dii 55 (365)
T cd03825 1 MKVLHLNTS----DISGGAARAAYRLHRALQAAGVDSTMLVQEKK---------------------ALISKIEIINADIV 55 (365)
T ss_pred CeEEEEecC----CCCCcHHHHHHHHHHHHHhcCCceeEEEeecc---------------------hhhhChhcccCCEE
Confidence 899999875 36699999999999999999999999997754 11222257789999
Q ss_pred EecCCc-----hhHHhh--hcCCcEEEEecchhHHHHhhhhhhhhhh---cCC--CCCCCchh-hhhhhhHHHHHHHHhh
Q 044542 160 HTESVS-----LPHWRA--KMVPNVAVTWHGIWYEVMHSKLFGELFS---NQN--GVLPGSMT-ELQEAMPRLVDEIRFF 226 (465)
Q Consensus 160 ~~~~~~-----~~~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~-~~~~~~~~~~~~~~~~ 226 (465)
|+|... ...+.. .++| .++++|+.+.............. ... +....... .+.....+... ....
T Consensus 56 h~~~~~~~~~~~~~~~~~~~~~~-~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 133 (365)
T cd03825 56 HLHWIHGGFLSIEDLSKLLDRKP-VVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKR-KAWA 133 (365)
T ss_pred EEEccccCccCHHHHHHHHcCCC-EEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHH-HHhc
Confidence 998632 111112 2677 99999997654332111111000 000 00000000 11111111111 0122
Q ss_pred cccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeecccc--ccCHHH
Q 044542 227 SSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVR--DKGHPL 304 (465)
Q Consensus 227 ~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~--~Kg~~~ 304 (465)
..++.++++|++.++.+.+.++++..++.++|||+|.+.+.+.. ....++.++++.+. .++++.|+... .||++.
T Consensus 134 ~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~--~~~~~~~~~~~~~~-~~i~~~~~~~~~~~K~~~~ 210 (365)
T cd03825 134 DLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRD--KREARKRLGLPADK-KIILFGAVGGTDPRKGFDE 210 (365)
T ss_pred cCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCc--HHHHHHHhCCCCCC-eEEEEEecCCCccccCHHH
Confidence 56778999999999999887667889999999999998775533 23456777777665 55556666654 899999
Q ss_pred HHHHHHHhhhc-CCCeEEEEEeCCcchhHHHHhcCCeEEcCCCC-hhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcC
Q 044542 305 LYEAFSSITRD-HPGVYLLVAGTGPWGRRYAELGQNVKVLGALE-AHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCG 382 (465)
Q Consensus 305 ll~a~~~l~~~-~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~-~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G 382 (465)
+++|++.+.++ .++++++++|+++..... .+..+|.++|+++ ++++..+|+.||++++||.. |++|++++|||++|
T Consensus 211 ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~-e~~g~~~~Eam~~g 288 (365)
T cd03825 211 LIEALKRLAERWKDDIELVVFGASDPEIPP-DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQ-ENFPNTAIEALACG 288 (365)
T ss_pred HHHHHHHhhhccCCCeEEEEeCCCchhhhc-cCCCceEecCCcCCHHHHHHHHHhCCEEEecccc-ccccHHHHHHHhcC
Confidence 99999998775 578999999987654432 3458899999998 78999999999999999975 99999999999999
Q ss_pred CeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 383 RTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 383 ~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
+|||+++.++.. +++.++.+|++++. |+++++++|.+++++ ++.+.++++++++.++++|||+.++++|.++|+++
T Consensus 289 ~PvI~~~~~~~~-e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 289 TPVVAFDVGGIP-DIVDHGVTGYLAKPGDPEDLAEGIEWLLAD-PDEREELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred CCEEEecCCCCh-hheeCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 999999999998 88888889999998 999999999999998 88899999999999999999999999999999864
No 22
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=7.8e-40 Score=330.08 Aligned_cols=350 Identities=16% Similarity=0.142 Sum_probs=250.1
Q ss_pred Cce-eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCc--------------EEEEEeCCCCCC---CCCcccCCcceEE
Q 044542 78 EKL-KLAVFSKTWPIGAAPGGMERHASTLYHALAARGH--------------EIHVFTAPSDRK---PHNDVHQGNLHVH 139 (465)
Q Consensus 78 ~~m-kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--------------~V~v~~~~~~~~---~~~~~~~~~~~v~ 139 (465)
++. ||+++.+.. ..||+|+++.+|+.+|.+.++ +|.+++...... ....+...+..+.
T Consensus 279 ~~~~rIl~vi~sl----~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~ 354 (694)
T PRK15179 279 SFVGPVLMINGSL----GAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVS 354 (694)
T ss_pred CCcceEEEEeCCC----CCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEE
Confidence 345 899999874 679999999999999999854 454443322111 1112333444454
Q ss_pred EeecCCCc--c----------------------------ccCCCCCCcEEEecCCch--hHHh---hhcCCcEEEEecch
Q 044542 140 FAANDHGS--V----------------------------NLNNDGAFDYVHTESVSL--PHWR---AKMVPNVAVTWHGI 184 (465)
Q Consensus 140 ~~~~~~~~--~----------------------------~~~~~~~~DiI~~~~~~~--~~~~---~~~~p~~v~~~h~~ 184 (465)
........ . ...++.+|||||+|.... ...+ ..++|.++.+.|+.
T Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvPvIv~t~h~~ 434 (694)
T PRK15179 355 VYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVPRIVLSVRTM 434 (694)
T ss_pred EeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 44332110 0 011677899999997532 2122 23567334466764
Q ss_pred hHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCC
Q 044542 185 WYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDET 264 (465)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~ 264 (465)
..... ... ....+..+.+.+ .....+.++++|+..++.+.+.++++.+++.|||||+|..
T Consensus 435 ~~~~~-~~~---------------~~~~~~~l~~~l----~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~ 494 (694)
T PRK15179 435 PPVDR-PDR---------------YRVEYDIIYSEL----LKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPL 494 (694)
T ss_pred ccccc-hhH---------------HHHHHHHHHHHH----HhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHH
Confidence 32100 000 001111111111 1123456677788888888887899999999999999988
Q ss_pred CccCCcccCcccccc--cCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh----c-
Q 044542 265 KFVHDPEAGVRFPEK--LGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL----G- 337 (465)
Q Consensus 265 ~~~~~~~~~~~~r~~--~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l----~- 337 (465)
.|.+.+.... .+.+ ...+ ++.++|+++||+.+.||++.+++|++++.+++|+++|+|+|+|+..+.++++ +
T Consensus 495 ~f~~~~~~~~-~~~~~~~~~~-~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL 572 (694)
T PRK15179 495 KSVQDDACTA-MMAQFDARTS-DARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGM 572 (694)
T ss_pred hcCCCchhhH-HHHhhccccC-CCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCC
Confidence 7764332111 1111 1123 3337888999999999999999999999888899999999999877666543 3
Q ss_pred -CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-C--HHH
Q 044542 338 -QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-N--VKS 413 (465)
Q Consensus 338 -~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d--~~~ 413 (465)
++|+|+|+. +++..+|+.+|++++||.+ ||||++++|||+||+|||+|+.||.+ |++.++.+|+++++ | +++
T Consensus 573 ~~~V~flG~~--~dv~~ll~aaDv~VlpS~~-Egfp~vlLEAMA~G~PVVat~~gG~~-EiV~dg~~GlLv~~~d~~~~~ 648 (694)
T PRK15179 573 GERILFTGLS--RRVGYWLTQFNAFLLLSRF-EGLPNVLIEAQFSGVPVVTTLAGGAG-EAVQEGVTGLTLPADTVTAPD 648 (694)
T ss_pred CCcEEEcCCc--chHHHHHHhcCEEEecccc-ccchHHHHHHHHcCCeEEEECCCChH-HHccCCCCEEEeCCCCCChHH
Confidence 899999997 5899999999999999976 99999999999999999999999998 89999999999986 5 569
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 044542 414 FVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFL 458 (465)
Q Consensus 414 la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 458 (465)
++++|.+++.+ ......++++++++++++|||+.+++++.++|+
T Consensus 649 La~aL~~ll~~-l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 649 VAEALARIHDM-CAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHHHHhC-hhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999998887 555567889999999999999999999999995
No 23
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=2.1e-39 Score=317.82 Aligned_cols=341 Identities=24% Similarity=0.284 Sum_probs=254.0
Q ss_pred CCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC-cccCCcceEEEeecCCC-------cccc-----------CCC
Q 044542 93 AAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN-DVHQGNLHVHFAANDHG-------SVNL-----------NND 153 (465)
Q Consensus 93 ~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~v~~~~~~~~-------~~~~-----------~~~ 153 (465)
+..||+++++.+++++|++.||+|+|++......... ........+........ .+.. .+.
T Consensus 18 ~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (398)
T cd03800 18 ADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRR 97 (398)
T ss_pred CCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999765433221 11122222322221110 0100 033
Q ss_pred C--CCcEEEecCCch--hHH---hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhh
Q 044542 154 G--AFDYVHTESVSL--PHW---RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFF 226 (465)
Q Consensus 154 ~--~~DiI~~~~~~~--~~~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (465)
. +||+||+|.... ... ...++| ++.+.|+...... ... .. ............+...+
T Consensus 98 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~-----~~~------~~----~~~~~~~~~~~~~~~~~ 161 (398)
T cd03800 98 EGGRPDLIHAHYWDSGLVALLLARRLGIP-LVHTFHSLGAVKR-----RHL------GA----ADTYEPARRIEAEERLL 161 (398)
T ss_pred cCCCccEEEEecCccchHHHHHHhhcCCc-eEEEeecccccCC-----ccc------cc----ccccchhhhhhHHHHHH
Confidence 3 899999986421 111 123557 8889997532100 000 00 00001111222344678
Q ss_pred cccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHH
Q 044542 227 SSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLY 306 (465)
Q Consensus 227 ~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll 306 (465)
+.+|.++++|+..++.+.+.++.+..++.+||||+|.+.+.+..... ..++.++.+.+. ++++++||+.+.||++.++
T Consensus 162 ~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~-~~~~~~~~~~~~-~~i~~~gr~~~~k~~~~ll 239 (398)
T cd03800 162 RAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAE-ARRARLLRDPDK-PRILAVGRLDPRKGIDTLI 239 (398)
T ss_pred hhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchh-hHHHhhccCCCC-cEEEEEcccccccCHHHHH
Confidence 89999999999999999987776667799999999988776543321 114444555444 7788999999999999999
Q ss_pred HHHHHhhhcCCCeEEEEEeCCcch------h----HHHHhc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHH
Q 044542 307 EAFSSITRDHPGVYLLVAGTGPWG------R----RYAELG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLT 374 (465)
Q Consensus 307 ~a~~~l~~~~~~~~l~ivG~g~~~------~----~~~~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~ 374 (465)
+|+..+.+++++++|+++|++... . ..++++ ++|.|+|+++.+++..+|+.||++++||.. |++|++
T Consensus 240 ~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~-e~~~~~ 318 (398)
T cd03800 240 RAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALY-EPFGLT 318 (398)
T ss_pred HHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccc-cccCcH
Confidence 999999888889999999986542 1 112222 789999999999999999999999999976 999999
Q ss_pred HHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 044542 375 LIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAY 453 (465)
Q Consensus 375 ~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 453 (465)
++|||++|+|||+++.++.. +++.++++|+++++ |+++++++|.+++++ ++.+++++++++++++++|||+.++++|
T Consensus 319 l~Ea~a~G~Pvi~s~~~~~~-e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 396 (398)
T cd03800 319 ALEAMACGLPVVATAVGGPR-DIVVDGVTGLLVDPRDPEALAAALRRLLTD-PALRRRLSRAGLRRARARYTWERVAARL 396 (398)
T ss_pred HHHHHhcCCCEEECCCCCHH-HHccCCCCeEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998 88899999999998 999999999999998 8999999999999998999999999998
Q ss_pred H
Q 044542 454 E 454 (465)
Q Consensus 454 ~ 454 (465)
+
T Consensus 397 ~ 397 (398)
T cd03800 397 L 397 (398)
T ss_pred h
Confidence 6
No 24
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=3.3e-39 Score=315.26 Aligned_cols=352 Identities=16% Similarity=0.196 Sum_probs=254.6
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCc---ccCCcceEEEeecCC-------------
Q 044542 82 LAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHND---VHQGNLHVHFAANDH------------- 145 (465)
Q Consensus 82 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---~~~~~~~v~~~~~~~------------- 145 (465)
||++++.+|.++..|| ...+++++++|++. |+|++++.......... +......+...+...
T Consensus 1 iL~~~~~~P~P~~~G~-~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGD-KIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLT 78 (397)
T ss_pred CeeecCCCCCCCCCCC-cEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcC
Confidence 6899999988666555 88899999999886 99999998754332211 111111111111100
Q ss_pred ---CccccC-------------CCCCCcEEEecCCchhHHhh---hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCC
Q 044542 146 ---GSVNLN-------------NDGAFDYVHTESVSLPHWRA---KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLP 206 (465)
Q Consensus 146 ---~~~~~~-------------~~~~~DiI~~~~~~~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 206 (465)
....+. ++.++|+||+++..+..++. .++| .+++.|+.....+. .......
T Consensus 79 ~~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~p-~i~~~~d~~~~~~~-----~~~~~~~---- 148 (397)
T TIGR03087 79 GEPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYVTPHVRGVP-RIVDFVDVDSDKWL-----QYARTKR---- 148 (397)
T ss_pred CCCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceeccccccCCC-eEeehhhHHHHHHH-----HHHhccC----
Confidence 000000 55799999999865544433 3567 88899986543221 1111100
Q ss_pred CchhhhhhhhHH--HHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCC
Q 044542 207 GSMTELQEAMPR--LVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPA 284 (465)
Q Consensus 207 ~~~~~~~~~~~~--~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~ 284 (465)
...++++....+ ...|+..++++|.++++|+..++.+.+.++....++.+||||+|.+.|.+...... ..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~------~~~~ 222 (397)
T TIGR03087 149 WPLRWIYRREGRLLLAYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPN------PYPP 222 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccC------CCCC
Confidence 001122211111 12355788999999999999999998865556789999999999988865432111 1122
Q ss_pred CCcEEEEEeeccccccCHHHHH----HHHHHhhhcCCCeEEEEEeCCcchhHHHHhc--CCeEEcCCCChhHHHHHHHhc
Q 044542 285 NVSLVMGVAGRLVRDKGHPLLY----EAFSSITRDHPGVYLLVAGTGPWGRRYAELG--QNVKVLGALEAHQLSEFYNAL 358 (465)
Q Consensus 285 ~~~~~l~~~Grl~~~Kg~~~ll----~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~--~~V~~~g~v~~~~~~~~~~~a 358 (465)
+. .+++|+|++.+.||++.++ +++..+.++.|+++|+|+|+|+.. .++++. ++|+|+|+++ ++..+|+.|
T Consensus 223 ~~-~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~~-~~~~l~~~~~V~~~G~v~--~~~~~~~~a 298 (397)
T TIGR03087 223 GK-RVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPSP-AVRALAALPGVTVTGSVA--DVRPYLAHA 298 (397)
T ss_pred CC-cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCChH-HHHHhccCCCeEEeeecC--CHHHHHHhC
Confidence 33 5677999999999999887 556667777799999999998764 455554 7899999995 789999999
Q ss_pred CeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 044542 359 DVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKE 438 (465)
Q Consensus 359 Dv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~ 438 (465)
|++|+||...||+|++++|||+||+|||+|+.++. .+...+++|++++.|+++++++|.+++++ ++.+++|++++++
T Consensus 299 dv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~--~i~~~~~~g~lv~~~~~~la~ai~~ll~~-~~~~~~~~~~ar~ 375 (397)
T TIGR03087 299 AVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAE--GIDALPGAELLVAADPADFAAAILALLAN-PAEREELGQAARR 375 (397)
T ss_pred CEEEecccccCCcccHHHHHHHcCCCEEecCcccc--cccccCCcceEeCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHH
Confidence 99999997569999999999999999999997542 33444567888866999999999999998 8899999999999
Q ss_pred HHHhhCCHHHHHHHHHHHHH
Q 044542 439 HALSMFTATKMASAYERFFL 458 (465)
Q Consensus 439 ~~~~~fs~~~~~~~~~~~~~ 458 (465)
+++++|||+.+++++.++|+
T Consensus 376 ~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 376 RVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHhCCHHHHHHHHHHHhc
Confidence 99999999999999999985
No 25
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=2e-39 Score=324.75 Aligned_cols=368 Identities=20% Similarity=0.230 Sum_probs=258.4
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCc-------------------------ccCCc
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHND-------------------------VHQGN 135 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------------------------~~~~~ 135 (465)
||++++.++.+....||.+.++..|+++|++.||+|+|+++......... ....+
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 69999998654468999999999999999999999999998765432210 01122
Q ss_pred ceEEEeecCC---Cc-------cccC-------------------CCCCCcEEEecCCch---hHHhh--------hcCC
Q 044542 136 LHVHFAANDH---GS-------VNLN-------------------NDGAFDYVHTESVSL---PHWRA--------KMVP 175 (465)
Q Consensus 136 ~~v~~~~~~~---~~-------~~~~-------------------~~~~~DiI~~~~~~~---~~~~~--------~~~p 175 (465)
..+.+..... .. ..+. ...+|||||+|.+.. +..+. .+.|
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~ 160 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIK 160 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCC
Confidence 3333332211 00 0000 247999999998631 22222 1456
Q ss_pred cEEEEecchhHHHHhh-hhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHH---------
Q 044542 176 NVAVTWHGIWYEVMHS-KLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVK--------- 245 (465)
Q Consensus 176 ~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~--------- 245 (465)
+++++|+..+..... ........ ...................++..+..+|.++++|+..++.+.+
T Consensus 161 -~v~tiH~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~ 236 (476)
T cd03791 161 -TVFTIHNLAYQGVFPLEALEDLGL---PWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDG 236 (476)
T ss_pred -EEEEeCCCCCCCCCCHHHHHHcCC---CccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHH
Confidence 999999975321100 00000000 0000000000000001111235678999999999999988763
Q ss_pred HhCCCCCCEEEecCCCCCCCccCCccc-----------------CcccccccCCC-CCCcEEEEEeeccccccCHHHHHH
Q 044542 246 IYQLPQRNVHVILNGVDETKFVHDPEA-----------------GVRFPEKLGVP-ANVSLVMGVAGRLVRDKGHPLLYE 307 (465)
Q Consensus 246 ~~~~~~~ki~vi~ngvd~~~~~~~~~~-----------------~~~~r~~~g~~-~~~~~~l~~~Grl~~~Kg~~~ll~ 307 (465)
.+.....++.+|+||+|.+.|.+.... +..+++++|++ +++.++++++||+.++||++.+++
T Consensus 237 ~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~ 316 (476)
T cd03791 237 LLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLE 316 (476)
T ss_pred HHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHH
Confidence 223346899999999999988775432 23467888886 233477889999999999999999
Q ss_pred HHHHhhhcCCCeEEEEEeCCcc--hhHHHHh----cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHc
Q 044542 308 AFSSITRDHPGVYLLVAGTGPW--GRRYAEL----GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHC 381 (465)
Q Consensus 308 a~~~l~~~~~~~~l~ivG~g~~--~~~~~~l----~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~ 381 (465)
|+..+.++ +++|+++|+|+. .+.++++ .+++.+.+..+.+++..+|+.||++++||.+ |+||++++|||+|
T Consensus 317 a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~-E~~gl~~lEAma~ 393 (476)
T cd03791 317 ALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRF-EPCGLTQMYAMRY 393 (476)
T ss_pred HHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCC-CCCcHHHHHHhhC
Confidence 99999875 489999998853 2344433 3688877666778888999999999999986 9999999999999
Q ss_pred CCeEEecCCCCcceeeeeeCC------ceEEeCC-CHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 044542 382 GRTVLTPNYPSIVRTVVVNEE------LGYTFSP-NVKSFVEALELVIRD--GPKVLQRKGLACKEHALSMFTATKMASA 452 (465)
Q Consensus 382 G~PvI~s~~gg~~~e~v~~~~------~G~l~~~-d~~~la~~i~~ll~~--~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 452 (465)
|+|||+++.||.. |++.++. +|+++++ |+++++++|.++++. .++.+.++++++. ++.|||+.++++
T Consensus 394 G~pvI~~~~gg~~-e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~---~~~fsw~~~a~~ 469 (476)
T cd03791 394 GTVPIVRATGGLA-DTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAM---AQDFSWDRSAKE 469 (476)
T ss_pred CCCCEECcCCCcc-ceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHh---ccCCChHHHHHH
Confidence 9999999999998 8888887 9999999 999999999998862 2566666666654 456999999999
Q ss_pred HHHHHHH
Q 044542 453 YERFFLR 459 (465)
Q Consensus 453 ~~~~~~~ 459 (465)
|+++|++
T Consensus 470 ~~~~y~~ 476 (476)
T cd03791 470 YLELYRS 476 (476)
T ss_pred HHHHHhC
Confidence 9999963
No 26
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=4.2e-39 Score=311.22 Aligned_cols=336 Identities=21% Similarity=0.319 Sum_probs=255.8
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCcc----------cc
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSV----------NL 150 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~ 150 (465)
||+++++.+ ..||+++.+.+++++|.+.||+|++++.......... . ..............+ ..
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPP-I-DATIILNLNMSKNPLSFLLALWKLRKI 74 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccch-h-hccceEEecccccchhhHHHHHHHHHH
Confidence 588888764 6799999999999999999999999987553322111 1 111111111111111 11
Q ss_pred CCCCCCcEEEecCCch--hHHh----hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHH
Q 044542 151 NNDGAFDYVHTESVSL--PHWR----AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIR 224 (465)
Q Consensus 151 ~~~~~~DiI~~~~~~~--~~~~----~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (465)
.++.+||+||+|.... ...+ ....+ ++.+.|+.... ........+ .
T Consensus 75 ~~~~~pdiv~~~~~~~~~~~~l~~~~~~~~~-~v~~~h~~~~~----------------------~~~~~~~~~-----~ 126 (360)
T cd04951 75 LRQFKPDVVHAHMFHANIFARLLRLFLPSPP-LICTAHSKNEG----------------------GRLRMLAYR-----L 126 (360)
T ss_pred HHhcCCCEEEEcccchHHHHHHHHhhCCCCc-EEEEeeccCch----------------------hHHHHHHHH-----H
Confidence 1577999999997532 1111 12334 88888875311 011111111 2
Q ss_pred hhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHH
Q 044542 225 FFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPL 304 (465)
Q Consensus 225 ~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ 304 (465)
....++.++++|+...+.+.+..+++.+++.++|||+|...+.+.......+++++++++++ ++++++|++.+.||++.
T Consensus 127 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~kg~~~ 205 (360)
T cd04951 127 TDFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDT-FVILAVGRLVEAKDYPN 205 (360)
T ss_pred HhhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCC-EEEEEEeeCchhcCcHH
Confidence 22446778899999999998876677899999999999888766554445577778887665 77889999999999999
Q ss_pred HHHHHHHhhhcCCCeEEEEEeCCcchhHHHH----hc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHH
Q 044542 305 LYEAFSSITRDHPGVYLLVAGTGPWGRRYAE----LG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEA 378 (465)
Q Consensus 305 ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~----l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EA 378 (465)
+++|+.++.+++|+++|+|+|+|+..+.+++ ++ ++|.++|++ +++..+|+.||++++||.. ||+|++++||
T Consensus 206 li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~-e~~~~~~~Ea 282 (360)
T cd04951 206 LLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLR--DDIAAYYNAADLFVLSSAW-EGFGLVVAEA 282 (360)
T ss_pred HHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEeccc--ccHHHHHHhhceEEecccc-cCCChHHHHH
Confidence 9999999988888999999999987765544 22 689999987 6899999999999999986 9999999999
Q ss_pred HHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 044542 379 MHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 379 ma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
|++|+|||+++.|+.. +++.+ +|+++++ |+++++++|.++++++++.++.++++ ++.+.++|||+.++++|.++|
T Consensus 283 ~a~G~PvI~~~~~~~~-e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y 358 (360)
T cd04951 283 MACELPVVATDAGGVR-EVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWLTLY 358 (360)
T ss_pred HHcCCCEEEecCCChh-hEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHh
Confidence 9999999999999998 77765 7889988 99999999999996646777777666 888888999999999999999
Q ss_pred H
Q 044542 458 L 458 (465)
Q Consensus 458 ~ 458 (465)
+
T Consensus 359 ~ 359 (360)
T cd04951 359 T 359 (360)
T ss_pred h
Confidence 6
No 27
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=2.2e-38 Score=318.76 Aligned_cols=365 Identities=15% Similarity=0.142 Sum_probs=251.2
Q ss_pred CceeEEEEeCCC----C---CCCCCChHHHHHHHHHHHH--------HhCCc----EEEEEeCCCCCCCCC------ccc
Q 044542 78 EKLKLAVFSKTW----P---IGAAPGGMERHASTLYHAL--------AARGH----EIHVFTAPSDRKPHN------DVH 132 (465)
Q Consensus 78 ~~mkIl~v~~~~----p---~~~~~gG~~~~~~~l~~~L--------~~~G~----~V~v~~~~~~~~~~~------~~~ 132 (465)
..|||++++... + ..+..||...++.+++++| +++|| +|+|+|....+.... +..
T Consensus 254 ~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~ 333 (784)
T TIGR02470 254 MVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKV 333 (784)
T ss_pred ccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccc
Confidence 358999999754 2 1234699999999999985 68899 788999876543221 111
Q ss_pred C--CcceEEEeecCC-C------------ccccC--------------CCCCCcEEEecCCc--hhHH-hh--hcCCcEE
Q 044542 133 Q--GNLHVHFAANDH-G------------SVNLN--------------NDGAFDYVHTESVS--LPHW-RA--KMVPNVA 178 (465)
Q Consensus 133 ~--~~~~v~~~~~~~-~------------~~~~~--------------~~~~~DiI~~~~~~--~~~~-~~--~~~p~~v 178 (465)
. .+..+...+..+ . .|.+. ...+||+||+|.+. +.+. ++ .++| .+
T Consensus 334 ~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP-~v 412 (784)
T TIGR02470 334 YGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVT-QC 412 (784)
T ss_pred cCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCC-EE
Confidence 1 222222222111 1 01111 24579999999863 2222 22 3678 89
Q ss_pred EEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHH----HHHH---------
Q 044542 179 VTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAE----VLVK--------- 245 (465)
Q Consensus 179 ~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~----~~~~--------- 245 (465)
.+.|........ ... ....-....+....++..+...+..||.||+.|..... .+.+
T Consensus 413 ~t~HsL~~~K~~---------~~g-~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~ 482 (784)
T TIGR02470 413 TIAHALEKTKYP---------DSD-IYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTM 482 (784)
T ss_pred EECCcchhhccc---------ccc-cccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccc
Confidence 999976322100 000 00000001111222333355778899999999975433 2211
Q ss_pred --Hh----CC--CCCCEEEecCCCCCCCccCCcccCc-----------------ccccccCC--CCCCcEEEEEeecccc
Q 044542 246 --IY----QL--PQRNVHVILNGVDETKFVHDPEAGV-----------------RFPEKLGV--PANVSLVMGVAGRLVR 298 (465)
Q Consensus 246 --~~----~~--~~~ki~vi~ngvd~~~~~~~~~~~~-----------------~~r~~~g~--~~~~~~~l~~~Grl~~ 298 (465)
.| |+ +..|+.+||+|+|.+.|.+...... ..++.+|+ +.++ .+|+++||+.+
T Consensus 483 p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~k-piIl~VGRL~~ 561 (784)
T TIGR02470 483 PGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNK-PIIFSMARLDR 561 (784)
T ss_pred cceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCC-cEEEEEeCCCc
Confidence 12 22 5679999999999998876433211 11355665 3344 56779999999
Q ss_pred ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcc-------h--hHHH-------Hhc--CCeEEcCCC-ChhHHHHHHH---
Q 044542 299 DKGHPLLYEAFSSITRDHPGVYLLVAGTGPW-------G--RRYA-------ELG--QNVKVLGAL-EAHQLSEFYN--- 356 (465)
Q Consensus 299 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-------~--~~~~-------~l~--~~V~~~g~v-~~~~~~~~~~--- 356 (465)
.||++.+++|+.++.+..++++|+|+|++.. . +.++ +++ ++|.|+|.. +..+..++|+
T Consensus 562 ~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iA 641 (784)
T TIGR02470 562 VKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIA 641 (784)
T ss_pred cCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhh
Confidence 9999999999988765556789999997642 1 1122 222 799999985 5566666664
Q ss_pred -hcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHH----hCChHHHH
Q 044542 357 -ALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVI----RDGPKVLQ 430 (465)
Q Consensus 357 -~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll----~~~~~~~~ 430 (465)
.+|++++||.+ |+||++++|||+||+|||+|+.||.+ |++.++.+|+++++ |+++++++|.+++ .+ ++.++
T Consensus 642 d~adVfV~PS~~-EpFGLvvLEAMAcGlPVVAT~~GG~~-EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~d-p~~~~ 718 (784)
T TIGR02470 642 DTKGIFVQPALY-EAFGLTVLEAMTCGLPTFATRFGGPL-EIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDED-PSYWQ 718 (784)
T ss_pred ccCcEEEECCcc-cCCCHHHHHHHHcCCCEEEcCCCCHH-HHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCC-HHHHH
Confidence 35799999976 99999999999999999999999998 99999999999999 9999999999886 46 89999
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 044542 431 RKGLACKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 431 ~~~~~~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
++++++++++.++|||+.++++++++.
T Consensus 719 ~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 719 KISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999998875
No 28
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1e-38 Score=317.38 Aligned_cols=352 Identities=19% Similarity=0.255 Sum_probs=264.4
Q ss_pred eEEEEeC-CCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCC--CCCcccCCcceEEEeecCC------------
Q 044542 81 KLAVFSK-TWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRK--PHNDVHQGNLHVHFAANDH------------ 145 (465)
Q Consensus 81 kIl~v~~-~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~--~~~~~~~~~~~v~~~~~~~------------ 145 (465)
+|++++. .||. ..||....+.+|+++|.+.-+.|..++...... ...++..+...+.......
T Consensus 1 ~v~l~~egtyp~--~~ggvs~w~~~~i~~~p~~~f~~~~~~~~~~~~~~~~y~~p~nv~~~~~~~l~~~~~~~~~~~~~~ 78 (475)
T cd03813 1 DVCLVLEGTYPY--VRGGVSSWVHQLITGLPEHTFAVVFIGADPEDYGEFKYELPPNVVHVEEVPLWSELPPPNRLSDSA 78 (475)
T ss_pred CeEEEEecCCCC--cCCchhHHHHHHHhhCCCceEEEEEEecCccccCCccccCCCCcceEEEEEccCcccccccccchh
Confidence 4788875 6775 889999999999999999888888888776554 2334544444443332110
Q ss_pred -------------C-------------------------cc-----ccC-------------------------------
Q 044542 146 -------------G-------------------------SV-----NLN------------------------------- 151 (465)
Q Consensus 146 -------------~-------------------------~~-----~~~------------------------------- 151 (465)
. .. ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (475)
T cd03813 79 GKAILRALLREVLLLFLTTFLPIIELEDLALELLRELLGKNEGSLTDFLYSKEFWEMLTELYREYCTDPSFVDYFWTVRN 158 (475)
T ss_pred hHHHHHHHHHHHhhhccccccccccchHHHHHHHHHhcccccccHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 0 00 000
Q ss_pred -----------CCCCCcEEEecCCchhH---H---hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhh
Q 044542 152 -----------NDGAFDYVHTESVSLPH---W---RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQE 214 (465)
Q Consensus 152 -----------~~~~~DiI~~~~~~~~~---~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (465)
...++|+||+|+..... . ...++| ++++.||........++.... .....+...+..
T Consensus 159 ~~~~l~~~l~~~~~~~dviH~~s~~~~g~~~~~~~~~~~~p-~I~t~Hg~~~~e~~~~~~~~~-----~~~~~~~~~~~~ 232 (475)
T cd03813 159 MLSPLLAAIARPLPKADVYHAVSTGYAGLLGALAKARRGTP-FLLTEHGIYTRERKIELLQAD-----WEMSYFRRLWIR 232 (475)
T ss_pred HHHHHHHHhccCCCCCCEEeccCcchHHHHHHHHHHHhCCC-EEEecCCccHHHHHHHHHhcc-----cchHHHHHHHHH
Confidence 34589999999764322 1 223567 999999976543222221110 000011112222
Q ss_pred hhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEee
Q 044542 215 AMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAG 294 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~G 294 (465)
.+..+ ++..++++|.|+++|+..++...+ +|.+++|+.+||||+|.+.|.+.... ..+ +++++++++|
T Consensus 233 ~~~~l--~~~~~~~ad~Ii~~s~~~~~~~~~-~g~~~~ki~vIpNgid~~~f~~~~~~--------~~~-~~~~~i~~vG 300 (475)
T cd03813 233 FFESL--GRLAYQAADRITTLYEGNRERQIE-DGADPEKIRVIPNGIDPERFAPARRA--------RPE-KEPPVVGLIG 300 (475)
T ss_pred HHHHH--HHHHHHhCCEEEecCHHHHHHHHH-cCCCHHHeEEeCCCcCHHHcCCcccc--------ccC-CCCcEEEEEe
Confidence 22222 236789999999999999887766 78888999999999999887664321 012 2347888999
Q ss_pred ccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcch----hHH----HHhc--CCeEEcCCCChhHHHHHHHhcCeEEec
Q 044542 295 RLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWG----RRY----AELG--QNVKVLGALEAHQLSEFYNALDVFVNP 364 (465)
Q Consensus 295 rl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~----~~~----~~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~p 364 (465)
|+.+.||++.+++|++.+.++.|+++++|+|+++.. +.+ ++++ ++|+|+| .+++.++|+.+|++++|
T Consensus 301 rl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlp 377 (475)
T cd03813 301 RVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLT 377 (475)
T ss_pred ccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeC
Confidence 999999999999999999988899999999987421 222 2333 7999999 37899999999999999
Q ss_pred ccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeee------CCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 044542 365 TLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVN------EELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACK 437 (465)
Q Consensus 365 s~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~------~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~ 437 (465)
|.. ||+|++++|||+||+|||+|+.|+.+ +++.+ +.+|+++++ |+++++++|.+++++ ++.+++++++++
T Consensus 378 S~~-Eg~p~~vlEAma~G~PVVatd~g~~~-elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~-~~~~~~~~~~a~ 454 (475)
T cd03813 378 SIS-EGQPLVILEAMAAGIPVVATDVGSCR-ELIEGADDEALGPAGEVVPPADPEALARAILRLLKD-PELRRAMGEAGR 454 (475)
T ss_pred chh-hcCChHHHHHHHcCCCEEECCCCChH-HHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 975 99999999999999999999999998 88887 568999999 999999999999999 899999999999
Q ss_pred HHHHhhCCHHHHHHHHHHHHH
Q 044542 438 EHALSMFTATKMASAYERFFL 458 (465)
Q Consensus 438 ~~~~~~fs~~~~~~~~~~~~~ 458 (465)
+++++.|+|++++++|.++|+
T Consensus 455 ~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 455 KRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHHHhCCHHHHHHHHHHHhC
Confidence 999999999999999999984
No 29
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=4.7e-39 Score=311.81 Aligned_cols=334 Identities=24% Similarity=0.279 Sum_probs=252.0
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecC----C-C-----ccc-
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAAND----H-G-----SVN- 149 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~----~-~-----~~~- 149 (465)
||+++++.+|+ +.++++.++++.|. ||++++++............. ..+...... . . .+.
T Consensus 1 ~~~~~~~~~~~-----~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (367)
T cd05844 1 RVLIFRPLLLA-----PSETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALA--VRLADLAGGKAGLRLGALRLLTGSA 71 (367)
T ss_pred CEEEEeCCCCC-----CchHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccc--eeeeecccchhHHHHHHHHhccccc
Confidence 68999998763 37899999999995 678888877654432222111 111111000 0 0 000
Q ss_pred -----cCCCCCCcEEEecCCch--hH---HhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHH
Q 044542 150 -----LNNDGAFDYVHTESVSL--PH---WRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRL 219 (465)
Q Consensus 150 -----~~~~~~~DiI~~~~~~~--~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (465)
..++.+||+||+|.... .. ....++| +++++|+......... .... .......
T Consensus 72 ~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p-~i~~~h~~~~~~~~~~----------~~~~--~~~~~~~---- 134 (367)
T cd05844 72 PQLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVP-LVVTFHGFDATTSLAL----------LLRS--RWALYAR---- 134 (367)
T ss_pred cHHHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCC-EEEEEeCccccccchh----------hccc--chhHHHH----
Confidence 01678999999986421 11 1223567 9999997532110000 0000 0011111
Q ss_pred HHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccc
Q 044542 220 VDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRD 299 (465)
Q Consensus 220 ~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~ 299 (465)
.+...++.+|.++++|+.+++.+.+ ++++..++.++|||+|.+.+.+... ..++.+++++|++.+.
T Consensus 135 -~~~~~~~~~d~ii~~s~~~~~~~~~-~~~~~~~i~vi~~g~d~~~~~~~~~------------~~~~~~i~~~G~~~~~ 200 (367)
T cd05844 135 -RRRRLARRAALFIAVSQFIRDRLLA-LGFPPEKVHVHPIGVDTAKFTPATP------------ARRPPRILFVGRFVEK 200 (367)
T ss_pred -HHHHHHHhcCEEEECCHHHHHHHHH-cCCCHHHeEEecCCCCHHhcCCCCC------------CCCCcEEEEEEeeccc
Confidence 2235678999999999999999988 5888889999999999887754321 1223677899999999
Q ss_pred cCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh------cCCeEEcCCCChhHHHHHHHhcCeEEecccC-----C
Q 044542 300 KGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL------GQNVKVLGALEAHQLSEFYNALDVFVNPTLR-----P 368 (465)
Q Consensus 300 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l------~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~-----~ 368 (465)
||++.+++|++.+.+++++++|+++|+|+..+.++++ .++|.|+|+++++++..+|+.||++++||.. .
T Consensus 201 K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~ 280 (367)
T cd05844 201 KGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDA 280 (367)
T ss_pred cChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCc
Confidence 9999999999999888899999999998766655432 3789999999999999999999999999863 4
Q ss_pred CCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHH
Q 044542 369 QGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTAT 447 (465)
Q Consensus 369 eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~ 447 (465)
||+|++++|||+||+|||+++.++.. +++.++++|+++++ |+++++++|.+++++ ++.+++++.+++++++++|||+
T Consensus 281 E~~~~~~~EA~a~G~PvI~s~~~~~~-e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~-~~~~~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 281 EGLPVVLLEAQASGVPVVATRHGGIP-EAVEDGETGLLVPEGDVAALAAALGRLLAD-PDLRARMGAAGRRRVEERFDLR 358 (367)
T ss_pred cCCchHHHHHHHcCCCEEEeCCCCch-hheecCCeeEEECCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHCCHH
Confidence 89999999999999999999999998 88899999999998 999999999999998 8899999999999999999999
Q ss_pred HHHHHHHHH
Q 044542 448 KMASAYERF 456 (465)
Q Consensus 448 ~~~~~~~~~ 456 (465)
.+++++.++
T Consensus 359 ~~~~~l~~i 367 (367)
T cd05844 359 RQTAKLEAL 367 (367)
T ss_pred HHHHHHhcC
Confidence 999998753
No 30
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.1e-38 Score=307.04 Aligned_cols=226 Identities=15% Similarity=0.193 Sum_probs=190.4
Q ss_pred cccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCccccc--ccCCCCCCcEEEEEeeccccccCHHH
Q 044542 227 SSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPE--KLGVPANVSLVMGVAGRLVRDKGHPL 304 (465)
Q Consensus 227 ~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~--~~g~~~~~~~~l~~~Grl~~~Kg~~~ 304 (465)
..+| ++++|...++.+.+.++++++|+.+||||+|...|.+........++ ..+++++. ++++++||+.+.||+..
T Consensus 338 ~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~-~vIg~VgRl~~~Kg~~~ 415 (578)
T PRK15490 338 PGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDAD-TTIGGVFRFVGDKNPFA 415 (578)
T ss_pred ecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCC-cEEEEEEEEehhcCHHH
Confidence 3444 77889989999988889999999999999999888765422112232 22344444 67889999999999999
Q ss_pred HHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh----c--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHH
Q 044542 305 LYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL----G--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEA 378 (465)
Q Consensus 305 ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l----~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EA 378 (465)
+++++.++.++.|+++|+|+|+|+..+.++++ + ++|+|+|+. +++..+|+.+|++++||.+ ||||++++||
T Consensus 416 LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~-EGfp~vlLEA 492 (578)
T PRK15490 416 WIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGAS--RDVGYWLQKMNVFILFSRY-EGLPNVLIEA 492 (578)
T ss_pred HHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCCh--hhHHHHHHhCCEEEEcccc-cCccHHHHHH
Confidence 99999998888899999999999887666543 3 889999996 7899999999999999976 9999999999
Q ss_pred HHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHH---HHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 044542 379 MHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEAL---ELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYE 454 (465)
Q Consensus 379 ma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i---~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 454 (465)
|++|+|||+|+.||.+ |++.++.+|+++++ |++++++++ ..+.++ .+.+..++++++++++++|||+.++++|.
T Consensus 493 MA~GlPVVATdvGG~~-EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~l-l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ 570 (578)
T PRK15490 493 QMVGVPVISTPAGGSA-ECFIEGVSGFILDDAQTVNLDQACRYAEKLVNL-WRSRTGICQQTQSFLQERFTVEHMVGTFV 570 (578)
T ss_pred HHhCCCEEEeCCCCcH-HHcccCCcEEEECCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 9999999999999998 89999999999999 888888876 444544 45556789999999999999999999999
Q ss_pred HHHHH
Q 044542 455 RFFLR 459 (465)
Q Consensus 455 ~~~~~ 459 (465)
++|.+
T Consensus 571 ki~~~ 575 (578)
T PRK15490 571 KTIAS 575 (578)
T ss_pred HHHHh
Confidence 99975
No 31
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.9e-38 Score=306.33 Aligned_cols=332 Identities=26% Similarity=0.370 Sum_probs=250.1
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCcc--cc--------
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSV--NL-------- 150 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~-------- 150 (465)
||+++++.||+ ..||.++++..++++|.+.||+|++++................ +.......... ..
T Consensus 1 kil~i~~~~~p--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T cd03795 1 RVLHVGKFYPP--DRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHR-VIRAPSLLNVASTPFSPSFFKQL 77 (357)
T ss_pred CeeEecCCCCC--CCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCce-EEEeecccccccccccHHHHHHH
Confidence 79999998874 5899999999999999999999999998765443322221211 21111110000 00
Q ss_pred -CCCCCCcEEEecCCchh----HHhh-hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHH
Q 044542 151 -NNDGAFDYVHTESVSLP----HWRA-KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIR 224 (465)
Q Consensus 151 -~~~~~~DiI~~~~~~~~----~~~~-~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (465)
....++|+||+|..... .... .+.| .+.++|+.... .. ........+ +..
T Consensus 78 ~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~---~~---------------~~~~~~~~~-----~~~ 133 (357)
T cd03795 78 KKLAKKADVIHLHFPNPLADLALLLLPRKKP-VVVHWHSDIVK---QK---------------LLLKLYRPL-----QRR 133 (357)
T ss_pred HhcCCCCCEEEEecCcchHHHHHHHhccCce-EEEEEcChhhc---cc---------------hhhhhhhHH-----HHH
Confidence 14778999999875321 1111 2445 88899963211 00 000111111 125
Q ss_pred hhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHH
Q 044542 225 FFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPL 304 (465)
Q Consensus 225 ~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ 304 (465)
+++.+|.++++|+...+.+...++. ..++.++|||+|...+.+...... .....+.+ +++++++|++.+.||++.
T Consensus 134 ~~~~~d~vi~~s~~~~~~~~~~~~~-~~~~~~i~~gi~~~~~~~~~~~~~---~~~~~~~~-~~~i~~~G~~~~~K~~~~ 208 (357)
T cd03795 134 FLRRADAIVATSPNYAETSPVLRRF-RDKVRVIPLGLDPARYPRPDALEE---AIWRRAAG-RPFFLFVGRLVYYKGLDV 208 (357)
T ss_pred HHHhcCEEEeCcHHHHHHHHHhcCC-ccceEEecCCCChhhcCCcchhhh---HhhcCCCC-CcEEEEecccccccCHHH
Confidence 6789999999999999988875554 388999999999887765432111 11122333 377889999999999999
Q ss_pred HHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh----c--CCeEEcCCCChhHHHHHHHhcCeEEecccC-CCCCcHHHHH
Q 044542 305 LYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL----G--QNVKVLGALEAHQLSEFYNALDVFVNPTLR-PQGLDLTLIE 377 (465)
Q Consensus 305 ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l----~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~-~eg~~~~~~E 377 (465)
+++|++++. +++++++|+|+....++++ + ++|+|+|+++++++.++|+.||++++||.. .|++|++++|
T Consensus 209 li~a~~~l~----~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~E 284 (357)
T cd03795 209 LLEAAAALP----DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLE 284 (357)
T ss_pred HHHHHHhcc----CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHH
Confidence 999999985 7999999999877665543 2 899999999999999999999999999863 5999999999
Q ss_pred HHHcCCeEEecCCCCcceeeeee-CCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHH
Q 044542 378 AMHCGRTVLTPNYPSIVRTVVVN-EELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMA 450 (465)
Q Consensus 378 Ama~G~PvI~s~~gg~~~e~v~~-~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 450 (465)
||++|+|||+++.++.. +.+.+ +++|+++++ |+++++++|.+++++ ++.+++|++++++.++++|||+.++
T Consensus 285 a~~~g~Pvi~~~~~~~~-~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 285 AMAFGKPVISTEIGTGG-SYVNLHGVTGLVVPPGDPAALAEAIRRLLED-PELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred HHHcCCCEEecCCCCch-hHHhhCCCceEEeCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHhcchHhhC
Confidence 99999999999999988 66665 889999998 999999999999999 8999999999999999999999864
No 32
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.6e-38 Score=307.18 Aligned_cols=345 Identities=24% Similarity=0.300 Sum_probs=262.4
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEee-----------c-CCCcc
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAA-----------N-DHGSV 148 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~-----------~-~~~~~ 148 (465)
||++++..||+ ..||.+.++..++++|.+.||+|++++........... ....+.... . .....
T Consensus 1 kIl~i~~~~~p--~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (364)
T cd03814 1 RIAIVTDTFLP--QVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA--RVVPVPSVPLPGYPEIRLALPPRRRVR 76 (364)
T ss_pred CeEEEecccCc--cccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC--CceeecccccCcccceEecccchhhHH
Confidence 79999998873 56999999999999999999999999987643222110 000110000 0 00011
Q ss_pred ccCCCCCCcEEEecCCchhHH------hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHH
Q 044542 149 NLNNDGAFDYVHTESVSLPHW------RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDE 222 (465)
Q Consensus 149 ~~~~~~~~DiI~~~~~~~~~~------~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (465)
...++.+||+||++......+ ...++| ++..+|+........... .......... .
T Consensus 77 ~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~---------------~~~~~~~~~~--~ 138 (364)
T cd03814 77 RLLDAFAPDVVHIATPGPLGLAALRAARRLGIP-VVTSYHTDFPEYLRYYGL---------------GPLSWLAWAY--L 138 (364)
T ss_pred HHHHhcCCCEEEEeccchhhHHHHHHHHHcCCC-EEEEEecChHHHhhhccc---------------chHhHhhHHH--H
Confidence 111577999999986532211 223567 899999865432211000 0111111111 1
Q ss_pred HHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCH
Q 044542 223 IRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGH 302 (465)
Q Consensus 223 ~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~ 302 (465)
..+++.+|.++++|+...+.+.+ . ...++.+++||+|.+.+.+.... ...+++++ + +++.+++++|++...||+
T Consensus 139 ~~~~~~~d~i~~~s~~~~~~~~~-~--~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~-~-~~~~~i~~~G~~~~~k~~ 212 (364)
T cd03814 139 RWFHNRADRVLVPSPSLADELRA-R--GFRRVRLWPRGVDTELFHPRRRD-EALRARLG-P-PDRPVLLYVGRLAPEKNL 212 (364)
T ss_pred HHHHHhCCEEEeCCHHHHHHHhc-c--CCCceeecCCCccccccCccccc-HHHHHHhC-C-CCCeEEEEEeccccccCH
Confidence 25678999999999999986654 2 34689999999999877654332 23344444 2 334778899999999999
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcC
Q 044542 303 PLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCG 382 (465)
Q Consensus 303 ~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G 382 (465)
+.+++++..+.++ ++++|+++|+|+..+.++...++|.++|+++.+++.++|+.||++++||.. |++|++++|||+||
T Consensus 213 ~~~i~~~~~l~~~-~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~-e~~~~~~lEa~a~g 290 (364)
T cd03814 213 EALLDADLPLRRR-PPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFPSRT-ETFGLVVLEAMASG 290 (364)
T ss_pred HHHHHHHHHhhhc-CCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECccc-ccCCcHHHHHHHcC
Confidence 9999999999887 899999999998887777566899999999999999999999999999975 99999999999999
Q ss_pred CeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 044542 383 RTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFL 458 (465)
Q Consensus 383 ~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 458 (465)
+|||+++.++.. +++.++++|+++++ |.++++++|.+++.+ ++.++++++++++.+ ++|+|+.++++++++|+
T Consensus 291 ~PvI~~~~~~~~-~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 291 LPVVAPDAGGPA-DIVTDGENGLLVEPGDAEAFAAALAALLAD-PELRRRMAARARAEA-ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred CCEEEcCCCCch-hhhcCCcceEEcCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH-hhcCHHHHHHHHHHhhC
Confidence 999999999998 88888899999999 999999999999999 899999999999999 55999999999999873
No 33
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=4.9e-39 Score=311.70 Aligned_cols=338 Identities=17% Similarity=0.198 Sum_probs=247.6
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC---ccc--CCcceEEEeecCC-Cc-------
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN---DVH--QGNLHVHFAANDH-GS------- 147 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---~~~--~~~~~v~~~~~~~-~~------- 147 (465)
||++++..+ ..||+++++.++++.|.+.||+|+++++........ ... ..+..+....... ..
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADIELSEEEKEIYLEWNEEN 76 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCCCCCHHHHHHHHHHHHHH
Confidence 689999875 569999999999999999999999998765432111 000 0011111100000 00
Q ss_pred -cccCCCCCCcEEEecCCchhHH---hhh-cCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHH
Q 044542 148 -VNLNNDGAFDYVHTESVSLPHW---RAK-MVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDE 222 (465)
Q Consensus 148 -~~~~~~~~~DiI~~~~~~~~~~---~~~-~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (465)
.......+||+||+|++..... ... +.| ++.+.|..... +. ......+
T Consensus 77 ~~~~~~~~~~Dvv~~h~~~~~~~~~~~~~~~~~-~i~~~H~~~~~---------------~~-----~~~~~~~------ 129 (372)
T cd03792 77 AERPLLDLDADVVVIHDPQPLALPLFKKKRGRP-WIWRCHIDLSS---------------PN-----RRVWDFL------ 129 (372)
T ss_pred hccccccCCCCEEEECCCCchhHHHhhhcCCCe-EEEEeeeecCC---------------Cc-----HHHHHHH------
Confidence 0011356899999998642222 222 556 88888963210 00 0111111
Q ss_pred HHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccC---CcccCcccccccCCCCCCcEEEEEeeccccc
Q 044542 223 IRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVH---DPEAGVRFPEKLGVPANVSLVMGVAGRLVRD 299 (465)
Q Consensus 223 ~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~---~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~ 299 (465)
...++++|.+++.|.. ... .+++..++ ++|||+|...... .+......++++|++++. .+++++||+.+.
T Consensus 130 ~~~~~~~d~~i~~~~~---~~~--~~~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~vgrl~~~ 202 (372)
T cd03792 130 QPYIEDYDAAVFHLPE---YVP--PQVPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYGIDPER-PYITQVSRFDPW 202 (372)
T ss_pred HHHHHhCCEEeecHHH---hcC--CCCCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCC-cEEEEEeccccc
Confidence 1456789998888732 222 24555566 9999999753211 112233567788887776 677799999999
Q ss_pred cCHHHHHHHHHHhhhcCCCeEEEEEeCCcch--------hHHH-Hhc--CCeEEcCCC--ChhHHHHHHHhcCeEEeccc
Q 044542 300 KGHPLLYEAFSSITRDHPGVYLLVAGTGPWG--------RRYA-ELG--QNVKVLGAL--EAHQLSEFYNALDVFVNPTL 366 (465)
Q Consensus 300 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~--------~~~~-~l~--~~V~~~g~v--~~~~~~~~~~~aDv~v~ps~ 366 (465)
||++.+++|++.+.++.++++|+++|+|+.. +.+. .++ ++|.|+|.. +++++..+|++||++++||.
T Consensus 203 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~ 282 (372)
T cd03792 203 KDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSI 282 (372)
T ss_pred cCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCC
Confidence 9999999999999887789999999998542 1212 122 789999986 88999999999999999997
Q ss_pred CCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCH
Q 044542 367 RPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTA 446 (465)
Q Consensus 367 ~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~ 446 (465)
+ ||||++++|||+||+|||+++.++.. +++.++.+|++++ +.++++++|.+++.+ ++.+++|++++++.+.++|+|
T Consensus 283 ~-Eg~g~~~lEA~a~G~Pvv~s~~~~~~-~~i~~~~~g~~~~-~~~~~a~~i~~ll~~-~~~~~~~~~~a~~~~~~~~s~ 358 (372)
T cd03792 283 R-EGFGLTVTEALWKGKPVIAGPVGGIP-LQIEDGETGFLVD-TVEEAAVRILYLLRD-PELRRKMGANAREHVRENFLI 358 (372)
T ss_pred c-cCCCHHHHHHHHcCCCEEEcCCCCch-hhcccCCceEEeC-CcHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHcCH
Confidence 5 99999999999999999999999998 8889999999987 677899999999998 889999999999999988999
Q ss_pred HHHHHHHHHHHHHh
Q 044542 447 TKMASAYERFFLRM 460 (465)
Q Consensus 447 ~~~~~~~~~~~~~~ 460 (465)
+.++++|+++|+++
T Consensus 359 ~~~~~~~~~~~~~~ 372 (372)
T cd03792 359 TRHLKDYLYLISKL 372 (372)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999863
No 34
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=7.7e-39 Score=308.84 Aligned_cols=318 Identities=23% Similarity=0.332 Sum_probs=245.6
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC-Ccccc----------CCCCCCcEEEec
Q 044542 94 APGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH-GSVNL----------NNDGAFDYVHTE 162 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~----------~~~~~~DiI~~~ 162 (465)
..||+++++.+++++|.+.||+|++++...... ......+..+....... ..+.. .++.+||+||+|
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dii~~~ 85 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLV--AELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDIVHAR 85 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchH--HHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCEEEEC
Confidence 459999999999999999999999998754221 11222222222221111 11111 167899999999
Q ss_pred CCc--hhHH---hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeCh
Q 044542 163 SVS--LPHW---RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISN 237 (465)
Q Consensus 163 ~~~--~~~~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~ 237 (465)
+.. +... ...++| ++.++|+...... .....++.+|.++++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~-------------------------------~~~~~~~~~~~vi~~s~ 133 (355)
T cd03819 86 SRAPAWSAYLAARRTRPP-FVTTVHGFYSVNF-------------------------------RYNAIMARGDRVIAVSN 133 (355)
T ss_pred CCchhHHHHHHHHhcCCC-EEEEeCCchhhHH-------------------------------HHHHHHHhcCEEEEeCH
Confidence 742 1111 123567 9999998653210 01144578999999999
Q ss_pred hHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCc---ccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhh
Q 044542 238 SAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGV---RFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITR 314 (465)
Q Consensus 238 ~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~---~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~ 314 (465)
...+.+.+.++++.+++.++|||+|...+.+...... .++++++.+++. ++++++||+.+.||++.+++++..+.+
T Consensus 134 ~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~Gr~~~~Kg~~~li~~~~~l~~ 212 (355)
T cd03819 134 FIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGK-PVILLPGRLTRWKGQEVFIEALARLKK 212 (355)
T ss_pred HHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCc-eEEEEeeccccccCHHHHHHHHHHHHh
Confidence 9999999878998899999999999988765432211 145666666555 778899999999999999999999988
Q ss_pred cCCCeEEEEEeCCcchhHH--------HHhc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCe
Q 044542 315 DHPGVYLLVAGTGPWGRRY--------AELG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRT 384 (465)
Q Consensus 315 ~~~~~~l~ivG~g~~~~~~--------~~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~P 384 (465)
++++++++++|.++..+.+ ++++ ++|.|+|+. +++.++|+.||++++||.+.|++|++++|||++|+|
T Consensus 213 ~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~P 290 (355)
T cd03819 213 DDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHC--SDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRP 290 (355)
T ss_pred cCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCc--ccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCC
Confidence 8789999999987654322 2223 789999994 799999999999999995459999999999999999
Q ss_pred EEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHH
Q 044542 385 VLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKM 449 (465)
Q Consensus 385 vI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~ 449 (465)
||+++.++.. +++.++.+|+++++ |+++++++|..++..+++.+.++++++++.++++|+|+.|
T Consensus 291 vI~~~~~~~~-e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 291 VIASDHGGAR-ETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred EEEcCCCCcH-HHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 9999999987 88888889999998 9999999997666644899999999999999999999864
No 35
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=1.9e-38 Score=306.29 Aligned_cols=342 Identities=27% Similarity=0.360 Sum_probs=266.1
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCC--c-------cccC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHG--S-------VNLN 151 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-------~~~~ 151 (465)
||+++++.++ .||+++++..++++|.+.||+|++++..............+..+........ . ....
T Consensus 1 ~i~~i~~~~~----~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T cd03807 1 KVLHVITGLD----VGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLI 76 (365)
T ss_pred CeEEEEeecc----CccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHH
Confidence 6899999873 4999999999999999999999999976543332223333333444333222 1 1111
Q ss_pred CCCCCcEEEecCCch--hH----HhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHh
Q 044542 152 NDGAFDYVHTESVSL--PH----WRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRF 225 (465)
Q Consensus 152 ~~~~~DiI~~~~~~~--~~----~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (465)
++.+||+||++.... .. ....+.+ ++++.|+...... .........+. ...
T Consensus 77 ~~~~~div~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~-----------------~~~~~~~~~~~-----~~~ 133 (365)
T cd03807 77 RRLRPDVVHTWMYHADLYGGLAARLAGVPP-VIWGIRHSDLDLG-----------------KKSTRLVARLR-----RLL 133 (365)
T ss_pred HhhCCCEEEeccccccHHHHHHHHhcCCCc-EEEEecCCccccc-----------------chhHhHHHHHH-----HHh
Confidence 678999999986421 11 1113345 8999998643210 00011112221 245
Q ss_pred hcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHH
Q 044542 226 FSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLL 305 (465)
Q Consensus 226 ~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~l 305 (465)
.+.++.++++|+...+.+.+ ++++.+++.++|||+|...+.+........+++++++++. ++++++|++.+.||++.+
T Consensus 134 ~~~~~~~i~~s~~~~~~~~~-~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~K~~~~l 211 (365)
T cd03807 134 SSFIPLIVANSAAAAEYHQA-IGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDT-FLIGIVARLHPQKDHATL 211 (365)
T ss_pred ccccCeEEeccHHHHHHHHH-cCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCC-eEEEEecccchhcCHHHH
Confidence 57789999999999999988 4888899999999999888776655555667788887665 788899999999999999
Q ss_pred HHHHHHhhhcCCCeEEEEEeCCcchhHHHH-----hc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHH
Q 044542 306 YEAFSSITRDHPGVYLLVAGTGPWGRRYAE-----LG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEA 378 (465)
Q Consensus 306 l~a~~~l~~~~~~~~l~ivG~g~~~~~~~~-----l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EA 378 (465)
++|+..+.+++++++|+++|.++.....+. ++ ++|.+.|.. +++..+|+.||++++||.. ||+|++++||
T Consensus 212 i~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~ps~~-e~~~~~~~Ea 288 (365)
T cd03807 212 LRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGER--SDVPALLNALDVFVLSSLS-EGFPNVLLEA 288 (365)
T ss_pred HHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEcccc--ccHHHHHHhCCEEEeCCcc-ccCCcHHHHH
Confidence 999999988888999999998876543322 22 689999976 6899999999999999986 9999999999
Q ss_pred HHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 044542 379 MHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 379 ma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
|+||+|||+++.++.. +++.+ +|+++++ |+++++++|.+++++ ++.+.+++++++++++++|||++++++|.++|
T Consensus 289 ~a~g~PvI~~~~~~~~-e~~~~--~g~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 364 (365)
T cd03807 289 MACGLPVVATDVGDNA-ELVGD--TGFLVPPGDPEALAEAIEALLAD-PALRQALGEAARERIEENFSIEAMVEAYEELY 364 (365)
T ss_pred HhcCCCEEEcCCCChH-HHhhc--CCEEeCCCCHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999998 77766 8999998 999999999999999 78999999999999999999999999999998
Q ss_pred H
Q 044542 458 L 458 (465)
Q Consensus 458 ~ 458 (465)
+
T Consensus 365 ~ 365 (365)
T cd03807 365 R 365 (365)
T ss_pred C
Confidence 4
No 36
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=4.2e-38 Score=304.98 Aligned_cols=345 Identities=23% Similarity=0.276 Sum_probs=258.2
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcc----eEEEeecCC---Ccc-----
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNL----HVHFAANDH---GSV----- 148 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~----~v~~~~~~~---~~~----- 148 (465)
||+++++.++ +..||.++++.+++++|.+.||+|++++................ ......... ..+
T Consensus 1 kIl~i~~~~~--~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (375)
T cd03821 1 KILHVIPSFD--PKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLL 78 (375)
T ss_pred CeEEEcCCCC--cccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHH
Confidence 7999999886 57899999999999999999999999998765443321111100 000000000 000
Q ss_pred --ccCCCCCCcEEEecCCch-h----HHh--hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHH
Q 044542 149 --NLNNDGAFDYVHTESVSL-P----HWR--AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRL 219 (465)
Q Consensus 149 --~~~~~~~~DiI~~~~~~~-~----~~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (465)
......++|+||+++... . ... ..++| +++..|+....... ....+...+...
T Consensus 79 ~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 140 (375)
T cd03821 79 AWLRLNIREADIVHVHGLWSYPSLAAARAARKYGIP-YVVSPHGMLDPWAL-----------------PHKALKKRLAWF 140 (375)
T ss_pred HHHHHhCCCCCEEEEecccchHHHHHHHHHHHhCCC-EEEEcccccccccc-----------------ccchhhhHHHHH
Confidence 001567899999997321 1 111 23566 89999986432110 001122222233
Q ss_pred HHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccc
Q 044542 220 VDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRD 299 (465)
Q Consensus 220 ~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~ 299 (465)
..+...++.++.+++.|+......... .+..++.++|||+|.+.+.+...... |+.++.+.+. .+++++|++.+.
T Consensus 141 ~~~~~~~~~~~~i~~~s~~~~~~~~~~--~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~i~~~G~~~~~ 215 (375)
T cd03821 141 LFERRLLQAAAAVHATSEQEAAEIRRL--GLKAPIAVIPNGVDIPPFAALPSRGR--RRKFPILPDK-RIILFLGRLHPK 215 (375)
T ss_pred HHHHHHHhcCCEEEECCHHHHHHHHhh--CCcccEEEcCCCcChhccCcchhhhh--hhhccCCCCC-cEEEEEeCcchh
Confidence 334466788999999998777776653 45689999999999988766443221 5555555555 778899999999
Q ss_pred cCHHHHHHHHHHhhhcCCCeEEEEEeCCcc--hhHHH----Hhc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCC
Q 044542 300 KGHPLLYEAFSSITRDHPGVYLLVAGTGPW--GRRYA----ELG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGL 371 (465)
Q Consensus 300 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~~~----~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~ 371 (465)
||++.+++|+..+.+++++++|+++|.+.. ...++ +++ ++|.++|+++++++.++|+.||++++||.. ||+
T Consensus 216 K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-e~~ 294 (375)
T cd03821 216 KGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHS-ENF 294 (375)
T ss_pred cCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEecccc-CCC
Confidence 999999999999998889999999997643 22333 222 889999999999999999999999999986 999
Q ss_pred cHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHH
Q 044542 372 DLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMAS 451 (465)
Q Consensus 372 ~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 451 (465)
|++++|||++|+|||+++.++.. +++.+ ..|++++.++++++++|.+++++ ++.++++++++++.+.++|+|+.+++
T Consensus 295 ~~~~~Eama~G~PvI~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~ 371 (375)
T cd03821 295 GIVVAEALACGTPVVTTDKVPWQ-ELIEY-GCGWVVDDDVDALAAALRRALEL-PQRLKAMGENGRALVEERFSWTAIAQ 371 (375)
T ss_pred CcHHHHHHhcCCCEEEcCCCCHH-HHhhc-CceEEeCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999998 77777 78999888779999999999999 79999999999999999999999999
Q ss_pred HHH
Q 044542 452 AYE 454 (465)
Q Consensus 452 ~~~ 454 (465)
+++
T Consensus 372 ~~~ 374 (375)
T cd03821 372 QLL 374 (375)
T ss_pred Hhh
Confidence 886
No 37
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=3e-38 Score=302.21 Aligned_cols=315 Identities=24% Similarity=0.318 Sum_probs=237.1
Q ss_pred eeEEEEeCCC-C-CCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEE--eecCC-------Ccc
Q 044542 80 LKLAVFSKTW-P-IGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHF--AANDH-------GSV 148 (465)
Q Consensus 80 mkIl~v~~~~-p-~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~--~~~~~-------~~~ 148 (465)
|||+++++.+ | +++..||.++++..++++|.+.||+|++++.................... ..... ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAE 80 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHH
Confidence 8999999976 2 13688999999999999999999999999987654322111000000000 00000 001
Q ss_pred ccCCCCCCcEEEecCCchhH--HhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhh
Q 044542 149 NLNNDGAFDYVHTESVSLPH--WRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFF 226 (465)
Q Consensus 149 ~~~~~~~~DiI~~~~~~~~~--~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (465)
...++.+||+||+|+..... ....+.| ++.+.|+...... .. .....
T Consensus 81 ~~~~~~~~Divh~~~~~~~~~~~~~~~~~-~v~~~h~~~~~~~-----------------------~~-------~~~~~ 129 (335)
T cd03802 81 RALAAGDFDIVHNHSLHLPLPFARPLPVP-VVTTLHGPPDPEL-----------------------LK-------LYYAA 129 (335)
T ss_pred HHHhcCCCCEEEecCcccchhhhcccCCC-EEEEecCCCCccc-----------------------ch-------HHHhh
Confidence 11167889999999864333 2334556 9999998542100 00 01334
Q ss_pred cccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHH
Q 044542 227 SSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLY 306 (465)
Q Consensus 227 ~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll 306 (465)
...+.++++|+..++.+... .++.+||||+|.+.|.+... ++ ..++++||+.+.||++.++
T Consensus 130 ~~~~~~~~~s~~~~~~~~~~-----~~~~vi~ngvd~~~~~~~~~-------------~~-~~i~~~Gr~~~~Kg~~~li 190 (335)
T cd03802 130 RPDVPFVSISDAQRRPWPPL-----PWVATVHNGIDLDDYPFRGP-------------KG-DYLLFLGRISPEKGPHLAI 190 (335)
T ss_pred CcCCeEEEecHHHHhhcccc-----cccEEecCCcChhhCCCCCC-------------CC-CEEEEEEeeccccCHHHHH
Confidence 67788999999988876542 78999999999988765211 22 4567999999999999999
Q ss_pred HHHHHhhhcCCCeEEEEEeCCcchhHHH----Hh---cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHH
Q 044542 307 EAFSSITRDHPGVYLLVAGTGPWGRRYA----EL---GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAM 379 (465)
Q Consensus 307 ~a~~~l~~~~~~~~l~ivG~g~~~~~~~----~l---~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAm 379 (465)
+++++. +++|+++|.|+..+... +. .++|.|+|+++++++.++|+.+|++++||.+.|++|++++|||
T Consensus 191 ~~~~~~-----~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAm 265 (335)
T cd03802 191 RAARRA-----GIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAM 265 (335)
T ss_pred HHHHhc-----CCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHH
Confidence 987653 78999999987654332 22 4899999999999999999999999999975699999999999
Q ss_pred HcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 044542 380 HCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFL 458 (465)
Q Consensus 380 a~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 458 (465)
+||+|||+++.||.. |++.++.+|+++++ +++++++|.++.+. + .+++++.+.++|||+.++++|+++|+
T Consensus 266 a~G~PvI~~~~~~~~-e~i~~~~~g~l~~~-~~~l~~~l~~l~~~-~------~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 266 ACGTPVIAFRRGAVP-EVVEDGVTGFLVDS-VEELAAAVARADRL-D------RAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred hcCCCEEEeCCCCch-hheeCCCcEEEeCC-HHHHHHHHHHHhcc-H------HHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999999999998 89999889999995 99999999998765 2 24677788899999999999999984
No 38
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.1e-37 Score=301.69 Aligned_cols=337 Identities=21% Similarity=0.245 Sum_probs=245.1
Q ss_pred eEEEEeCC-CCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC-Cccc-----cC--
Q 044542 81 KLAVFSKT-WPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH-GSVN-----LN-- 151 (465)
Q Consensus 81 kIl~v~~~-~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-----~~-- 151 (465)
||++++.. +| +..||+++++.+++++|.++||+|+|++......... ....+..+...+... .... ..
T Consensus 1 ~i~~i~~~~~~--~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (363)
T cd04955 1 KIAIIGTRGIP--AKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKE-TEYNGVRLIHIPAPEIGGLGTIIYDILAI 77 (363)
T ss_pred CeEEEecCcCC--cccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcc-cccCCceEEEcCCCCccchhhhHHHHHHH
Confidence 68999664 55 5789999999999999999999999999876543321 112233333322221 1100 00
Q ss_pred -----CCCCCcEEEecCCch--hHHhh--hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHH
Q 044542 152 -----NDGAFDYVHTESVSL--PHWRA--KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDE 222 (465)
Q Consensus 152 -----~~~~~DiI~~~~~~~--~~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (465)
.+.++|+||...+.. ...+. .+.| ++++.|+..... . .. ......+... .+
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~v~~~h~~~~~~---~----------~~-~~~~~~~~~~-----~~ 137 (363)
T cd04955 78 LHALFVKRDIDHVHALGPAIAPFLPLLRLKGKK-VVVNMDGLEWKR---A----------KW-GRPAKRYLKF-----GE 137 (363)
T ss_pred HHHHhccCCeEEEEecCccHHHHHHHHHhcCCC-EEEEccCcceee---c----------cc-ccchhHHHHH-----HH
Confidence 245566666555432 11111 2456 999999853210 0 00 0000111111 12
Q ss_pred HHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCH
Q 044542 223 IRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGH 302 (465)
Q Consensus 223 ~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~ 302 (465)
...++.+|.++++|+..++.+++.+|.+. .+||||+|...+.+ ....+++++++++. .++++||+.+.||+
T Consensus 138 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~---~~i~ngv~~~~~~~----~~~~~~~~~~~~~~--~i~~~G~~~~~Kg~ 208 (363)
T cd04955 138 KLAVKFADRLIADSPGIKEYLKEKYGRDS---TYIPYGADHVVSSE----EDEILKKYGLEPGR--YYLLVGRIVPENNI 208 (363)
T ss_pred HHHHhhccEEEeCCHHHHHHHHHhcCCCC---eeeCCCcChhhcch----hhhhHHhcCCCCCc--EEEEEecccccCCH
Confidence 35678899999999999999987787533 89999999876544 11234445554443 45699999999999
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEeCCcchh----HHH-Hh--cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHH
Q 044542 303 PLLYEAFSSITRDHPGVYLLVAGTGPWGR----RYA-EL--GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTL 375 (465)
Q Consensus 303 ~~ll~a~~~l~~~~~~~~l~ivG~g~~~~----~~~-~l--~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~ 375 (465)
+.+++|++++.. +++|+++|+|+... .++ ++ .++|+++|+++++++.++|+.||++++||...|++|+++
T Consensus 209 ~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~ 285 (363)
T cd04955 209 DDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSL 285 (363)
T ss_pred HHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHH
Confidence 999999998854 78999999974432 222 22 289999999999999999999999999997559999999
Q ss_pred HHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 044542 376 IEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYE 454 (465)
Q Consensus 376 ~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 454 (465)
+|||+||+|||+|+.|+.. |++.+ +|.++++ |. ++++|.+++++ ++.+.++++++++.+.++|||+.++++|+
T Consensus 286 ~EAma~G~PvI~s~~~~~~-e~~~~--~g~~~~~~~~--l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 359 (363)
T cd04955 286 LEAMAYGCPVLASDNPFNR-EVLGD--KAIYFKVGDD--LASLLEELEAD-PEEVSAMAKAARERIREKYTWEKIADQYE 359 (363)
T ss_pred HHHHHcCCCEEEecCCccc-eeecC--CeeEecCchH--HHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999998 77654 7888887 44 99999999999 78899999999999999999999999999
Q ss_pred HHHH
Q 044542 455 RFFL 458 (465)
Q Consensus 455 ~~~~ 458 (465)
++|+
T Consensus 360 ~~y~ 363 (363)
T cd04955 360 ELYK 363 (363)
T ss_pred HHhC
Confidence 9984
No 39
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=2.9e-38 Score=305.58 Aligned_cols=345 Identities=23% Similarity=0.266 Sum_probs=258.7
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCc-----------cc
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGS-----------VN 149 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~ 149 (465)
||++++..++++ ..||+++++.+++++|.+.||+|++++........................... ..
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRL 79 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHH
Confidence 689999887642 689999999999999999999999999887554433211111110000000000 01
Q ss_pred cCCCCCCcEEEecCCchhHHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhccc
Q 044542 150 LNNDGAFDYVHTESVSLPHWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSY 229 (465)
Q Consensus 150 ~~~~~~~DiI~~~~~~~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (465)
.....++|+||+++.........+.| .+.++|+........... ......... .+...++.+
T Consensus 80 ~~~~~~~Dii~~~~~~~~~~~~~~~~-~i~~~hd~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~ 141 (365)
T cd03809 80 LLLLLGLDLLHSPHNTAPLLRLRGVP-VVVTIHDLIPLRFPEYFS---------------PGFRRYFRR--LLRRALRRA 141 (365)
T ss_pred HhhhcCCCeeeecccccCcccCCCCC-EEEEeccchhhhCcccCC---------------HHHHHHHHH--HHHHHHHHc
Confidence 11567899999998654443444567 999999875432211100 011111111 123668899
Q ss_pred CEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHH
Q 044542 230 NQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAF 309 (465)
Q Consensus 230 d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~ 309 (465)
|.++++|+..++.+.+.++.+..++.++|||+|...+....... +.+.....+. .+++++|++.+.||++.+++++
T Consensus 142 d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~i~~~G~~~~~K~~~~~l~~~ 217 (365)
T cd03809 142 DAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE---VLRALYLLPR-PYFLYVGTIEPRKNLERLLEAF 217 (365)
T ss_pred CEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH---HHHHhcCCCC-CeEEEeCCCccccCHHHHHHHH
Confidence 99999999999999998887788999999999988775543211 2222233333 6788999999999999999999
Q ss_pred HHhhhcCCCeEEEEEeCCcchh--HHH---Hh--cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcC
Q 044542 310 SSITRDHPGVYLLVAGTGPWGR--RYA---EL--GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCG 382 (465)
Q Consensus 310 ~~l~~~~~~~~l~ivG~g~~~~--~~~---~l--~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G 382 (465)
..+.+.+++++|+++|.+.... ..+ ++ .++|+++|+++++++.++|+.||++++||.. |++|++++|||++|
T Consensus 218 ~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~-e~~~~~~~Ea~a~G 296 (365)
T cd03809 218 ARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLY-EGFGLPVLEAMACG 296 (365)
T ss_pred HHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchh-ccCCCCHHHHhcCC
Confidence 9999887789999999764322 111 23 3899999999999999999999999999976 99999999999999
Q ss_pred CeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 044542 383 RTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYE 454 (465)
Q Consensus 383 ~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 454 (465)
+|||+++.|+.. +++ ++.|+++++ |+++++++|.+++.+ ++.+.++++++++.+++ |+|+++++++.
T Consensus 297 ~pvI~~~~~~~~-e~~--~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~-~sw~~~~~~~~ 364 (365)
T cd03809 297 TPVIASNISSLP-EVA--GDAALYFDPLDPEALAAAIERLLED-PALREELRERGLARAKR-FSWEKTARRTL 364 (365)
T ss_pred CcEEecCCCCcc-cee--cCceeeeCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHh-CCHHHHHHHHh
Confidence 999999999998 666 346888888 999999999999998 89999999999976655 99999999886
No 40
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=1.4e-37 Score=300.27 Aligned_cols=350 Identities=30% Similarity=0.458 Sum_probs=269.3
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEE---eecCC---------Ccc
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHF---AANDH---------GSV 148 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~---~~~~~---------~~~ 148 (465)
||+++++.+|+ ..||.+.++..++++|.+.||+|++++.................... ..... ...
T Consensus 1 kI~ii~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (374)
T cd03801 1 KILLVTPEYPP--SVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLR 78 (374)
T ss_pred CeeEEecccCC--ccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHH
Confidence 69999998764 36999999999999999999999999988765443321111111110 00000 000
Q ss_pred ccCCCCCCcEEEecCCchhHH-----hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHH
Q 044542 149 NLNNDGAFDYVHTESVSLPHW-----RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEI 223 (465)
Q Consensus 149 ~~~~~~~~DiI~~~~~~~~~~-----~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (465)
...+..++|+||++....... ...+.| ++.++|+......... ....... ....+.
T Consensus 79 ~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~----------------~~~~~~~--~~~~~~ 139 (374)
T cd03801 79 RLLRRERFDVVHAHDWLALLAAALAARLLGIP-LVLTVHGLEFGRPGNE----------------LGLLLKL--ARALER 139 (374)
T ss_pred HHhhhcCCcEEEEechhHHHHHHHHHHhcCCc-EEEEeccchhhccccc----------------hhHHHHH--HHHHHH
Confidence 111677999999998643332 233556 9999999764322110 0011111 111223
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHH
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHP 303 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~ 303 (465)
..++.+|.++++|+...+.+.+.++.+..++.++|||+|...+.+.. ...+.......+ .++++++|++.+.||++
T Consensus 140 ~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~i~~~g~~~~~k~~~ 215 (374)
T cd03801 140 RALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP---RAARRRLGIPED-EPVILFVGRLVPRKGVD 215 (374)
T ss_pred HHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc---hHHHhhcCCcCC-CeEEEEecchhhhcCHH
Confidence 66789999999999999999997776667999999999988775432 112222222333 37888999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh------cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHH
Q 044542 304 LLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL------GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIE 377 (465)
Q Consensus 304 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l------~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~E 377 (465)
.+++++..+.+++++++|+++|.++..+.++++ .++|.+.|+++++++.++|+.||++++|+.. |++|++++|
T Consensus 216 ~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~-~~~~~~~~E 294 (374)
T cd03801 216 LLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLY-EGFGLVLLE 294 (374)
T ss_pred HHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchh-ccccchHHH
Confidence 999999999888889999999988777666542 3899999999999999999999999999986 999999999
Q ss_pred HHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 044542 378 AMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERF 456 (465)
Q Consensus 378 Ama~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 456 (465)
||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.+++.+ ++.++++++++++.+.+.|+|+++++++.++
T Consensus 295 a~~~g~pvI~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (374)
T cd03801 295 AMAAGLPVVASDVGGIP-EVVEDGETGLLVPPGDPEALAEAILRLLDD-PELRRRLGEAARERVAERFSWDRVAARTEEV 372 (374)
T ss_pred HHHcCCcEEEeCCCChh-HHhcCCcceEEeCCCCHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 99999999999999998 88888999999999 899999999999999 8899999999998999999999999999998
Q ss_pred HH
Q 044542 457 FL 458 (465)
Q Consensus 457 ~~ 458 (465)
|+
T Consensus 373 ~~ 374 (374)
T cd03801 373 YY 374 (374)
T ss_pred hC
Confidence 73
No 41
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.4e-37 Score=300.57 Aligned_cols=362 Identities=13% Similarity=0.127 Sum_probs=248.2
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCc--EEEEEeCCCCCCCCC-----------cccCCcceEEE---ee
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGH--EIHVFTAPSDRKPHN-----------DVHQGNLHVHF---AA 142 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~-----------~~~~~~~~v~~---~~ 142 (465)
+++|++++++. ...||+|+.+...+.+|.+.|+ +|.++|...+..... ++......++. ..
T Consensus 33 ~~~v~f~HP~~---~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~ 109 (463)
T PLN02949 33 KRAVGFFHPYT---NDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKW 109 (463)
T ss_pred CcEEEEECCCC---CCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEeccccc
Confidence 56999999875 3445999999999999999998 777777653222211 00101111111 01
Q ss_pred cCCCccccC-----------------CCCCCcEEEecCCc----hhHHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcC
Q 044542 143 NDHGSVNLN-----------------NDGAFDYVHTESVS----LPHWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQ 201 (465)
Q Consensus 143 ~~~~~~~~~-----------------~~~~~DiI~~~~~~----~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~ 201 (465)
.....|... ....|| |++.+.+ ++.....+.| ++..+|-..... ++........
T Consensus 110 ~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~-v~vDt~~~~~~~pl~~~~~~~-v~~yvH~p~~~~---dm~~~v~~~~ 184 (463)
T PLN02949 110 IEEETYPRFTMIGQSLGSVYLAWEALCKFTPL-YFFDTSGYAFTYPLARLFGCK-VVCYTHYPTISS---DMISRVRDRS 184 (463)
T ss_pred cccccCCceehHHHHHHHHHHHHHHHHhcCCC-EEEeCCCcccHHHHHHhcCCc-EEEEEeCCcchH---HHHHHHhhcc
Confidence 111222221 234555 5554432 2222222556 999999643221 1111110000
Q ss_pred ------CC-CCC---CchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcc
Q 044542 202 ------NG-VLP---GSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPE 271 (465)
Q Consensus 202 ------~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~ 271 (465)
.. ... ...+.++......+ +....+.+|.++++|++.++.+.+.++. ++++.+++||+|.+.+...+.
T Consensus 185 ~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l-~~~~~~~ad~ii~nS~~t~~~l~~~~~~-~~~i~vvyp~vd~~~~~~~~~ 262 (463)
T PLN02949 185 SMYNNDASIARSFWLSTCKILYYRAFAWM-YGLVGRCAHLAMVNSSWTKSHIEALWRI-PERIKRVYPPCDTSGLQALPL 262 (463)
T ss_pred cccCccchhhccchhHHHHHHHHHHHHHH-HHHHcCCCCEEEECCHHHHHHHHHHcCC-CCCeEEEcCCCCHHHcccCCc
Confidence 00 000 11112222222111 2244588999999999999999887665 458899999999765532211
Q ss_pred cCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhc----CCCeEEEEEeCCcc---h---hHHHH----hc
Q 044542 272 AGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRD----HPGVYLLVAGTGPW---G---RRYAE----LG 337 (465)
Q Consensus 272 ~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~----~~~~~l~ivG~g~~---~---~~~~~----l~ 337 (465)
.. +.++ ..++++||+.++||++.+++|++++.++ .++++|+|+|++.. . +++++ ++
T Consensus 263 ~~---------~~~~-~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~ 332 (463)
T PLN02949 263 ER---------SEDP-PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELG 332 (463)
T ss_pred cc---------cCCC-CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcC
Confidence 00 1122 4566999999999999999999987653 47899999998642 1 22332 32
Q ss_pred --CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeee---CCceEEeCCCHH
Q 044542 338 --QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVN---EELGYTFSPNVK 412 (465)
Q Consensus 338 --~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~---~~~G~l~~~d~~ 412 (465)
++|.|+|+++.+++.++|+.||++++|+.. |+||++++|||++|+|||+++.||..++++.+ +.+|++++ |++
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~-E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~-~~~ 410 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVAGLHSMID-EHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT-TVE 410 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcc-CCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC-CHH
Confidence 789999999999999999999999999965 99999999999999999999999876577765 56899886 999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCC
Q 044542 413 SFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRMKNP 463 (465)
Q Consensus 413 ~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 463 (465)
+++++|.++++++++.+++|++++++++.+ |||+++++++.+.+++++++
T Consensus 411 ~la~ai~~ll~~~~~~r~~m~~~ar~~~~~-FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 411 EYADAILEVLRMRETERLEIAAAARKRANR-FSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHhh
Confidence 999999999996578889999999999955 99999999999999988764
No 42
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=4.4e-38 Score=303.51 Aligned_cols=327 Identities=24% Similarity=0.329 Sum_probs=253.4
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCc--ccCCcceEEEeecCCCccc-------cC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHND--VHQGNLHVHFAANDHGSVN-------LN 151 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~-------~~ 151 (465)
||+++++.||+ |.++++.+++++|.++||+|++++.......... .......+.+.......+. ..
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLAREL 75 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 79999999863 3688999999999999999999998765432211 1111111111100000010 11
Q ss_pred CCCCCcEEEecCCc---hhHHhh---hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHh
Q 044542 152 NDGAFDYVHTESVS---LPHWRA---KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRF 225 (465)
Q Consensus 152 ~~~~~DiI~~~~~~---~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (465)
++.++|+||+|... ...++. .+.| ++.+.|+.... ... .. ..+...
T Consensus 76 ~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~-------------~~-------~~~~~~ 127 (355)
T cd03799 76 RRLGIDHIHAHFGTTPATVAMLASRLGGIP-YSFTAHGKDIF-------RSP-------------DA-------IDLDEK 127 (355)
T ss_pred HhcCCCEEEECCCCchHHHHHHHHHhcCCC-EEEEEeccccc-------ccC-------------ch-------HHHHHH
Confidence 46789999998652 222222 1355 88888864211 000 00 112256
Q ss_pred hcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHH
Q 044542 226 FSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLL 305 (465)
Q Consensus 226 ~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~l 305 (465)
++.+|.++++|+..++.+.+.++.+..++.++|||+|.+.+.+... . ..++++.++++|++.+.||++.+
T Consensus 128 ~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~---------~-~~~~~~~i~~~g~~~~~k~~~~l 197 (355)
T cd03799 128 LARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPP---------P-PPGEPLRILSVGRLVEKKGLDYL 197 (355)
T ss_pred HhhCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccc---------c-ccCCCeEEEEEeeeccccCHHHH
Confidence 7899999999999999999977888899999999999887755430 0 11334788899999999999999
Q ss_pred HHHHHHhhhcCCCeEEEEEeCCcchhHHHHh------cCCeEEcCCCChhHHHHHHHhcCeEEecccCC-----CCCcHH
Q 044542 306 YEAFSSITRDHPGVYLLVAGTGPWGRRYAEL------GQNVKVLGALEAHQLSEFYNALDVFVNPTLRP-----QGLDLT 374 (465)
Q Consensus 306 l~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l------~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~-----eg~~~~ 374 (465)
++++..+.+++++++++++|.++..+.+++. .++|.+.|+++.+++..+|+.||++++||..+ ||+|++
T Consensus 198 ~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~ 277 (355)
T cd03799 198 LEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVV 277 (355)
T ss_pred HHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHH
Confidence 9999999888889999999998876655442 37899999999999999999999999999743 999999
Q ss_pred HHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 044542 375 LIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASA 452 (465)
Q Consensus 375 ~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 452 (465)
++|||++|+|||+++.++.+ +++.++.+|+++++ |+++++++|.+++++ ++.+.++++++++.++++|||+.++++
T Consensus 278 ~~Ea~a~G~Pvi~~~~~~~~-~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 278 LMEAMAMGLPVISTDVSGIP-ELVEDGETGLLVPPGDPEALADAIERLLDD-PELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred HHHHHHcCCCEEecCCCCcc-hhhhCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 99999999999999999987 88888889999998 999999999999999 888999999999999999999999875
No 43
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=4.2e-37 Score=298.00 Aligned_cols=349 Identities=26% Similarity=0.402 Sum_probs=261.2
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEe--ecCCCc--c-------c
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFA--ANDHGS--V-------N 149 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~--~-------~ 149 (465)
||++++..|| |..||.+..+..++++|.+.||+|++++..................... ...... + .
T Consensus 1 kil~~~~~~~--p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (374)
T cd03817 1 KIGIFTDTYL--PQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALII 78 (374)
T ss_pred CeeEeehhcc--CCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHH
Confidence 6999999887 4779999999999999999999999999876544332211111111100 000000 0 1
Q ss_pred cCCCCCCcEEEecCCchhHH------hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHH
Q 044542 150 LNNDGAFDYVHTESVSLPHW------RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEI 223 (465)
Q Consensus 150 ~~~~~~~DiI~~~~~~~~~~------~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (465)
..+..+||+||++....... ...++| ++.+.|+.+....+...... . .......+ ..++
T Consensus 79 ~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~-~~~~ 143 (374)
T cd03817 79 ILKELGPDIVHTHTPFSLGLLGLRVARKLGIP-VVATYHTMYEDYTHYVPLGR----------L---LARAVVRR-KLSR 143 (374)
T ss_pred HHhhcCCCEEEECCchhhhhHHHHHHHHcCCC-EEEEecCCHHHHHHHHhccc----------c---hhHHHHHH-HHHH
Confidence 12678999999987532211 123567 99999987653222111000 0 01111110 2234
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHH
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHP 303 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~ 303 (465)
..++.+|.++++|+..++.+.+ ++. ..++.++|||+|...+.+.... ..+++++..++. ++++++|++.+.||++
T Consensus 144 ~~~~~~d~i~~~s~~~~~~~~~-~~~-~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~i~~~G~~~~~k~~~ 218 (374)
T cd03817 144 RFYNRCDAVIAPSEKIADLLRE-YGV-KRPIEVIPTGIDLDRFEPVDGD--DERRKLGIPEDE-PVLLYVGRLAKEKNID 218 (374)
T ss_pred HHhhhCCEEEeccHHHHHHHHh-cCC-CCceEEcCCccchhccCccchh--HHHHhcCCCCCC-eEEEEEeeeecccCHH
Confidence 6788999999999999998887 554 3569999999998877654332 224455555444 7888999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh----c--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHH
Q 044542 304 LLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL----G--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIE 377 (465)
Q Consensus 304 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l----~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~E 377 (465)
.++++++.+.+++++++++++|+|+..+.++++ + ++|.++|+++++++..+|+.||++++||.. |++|++++|
T Consensus 219 ~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~-e~~~~~~~E 297 (374)
T cd03817 219 FLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTT-ETQGLVLLE 297 (374)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccc-cCcChHHHH
Confidence 999999999888889999999998877666553 2 799999999999999999999999999975 999999999
Q ss_pred HHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 044542 378 AMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERF 456 (465)
Q Consensus 378 Ama~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 456 (465)
||++|+|||+++.++.. +++.++++|+++++ +. +++++|.+++++ ++.++++++++++.+++.+ .++++.++
T Consensus 298 a~~~g~PvI~~~~~~~~-~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 370 (374)
T cd03817 298 AMAAGLPVVAVDAPGLP-DLVADGENGFLFPPGDE-ALAEALLRLLQD-PELRRRLSKNAEESAEKFS----FAKKVEKL 370 (374)
T ss_pred HHHcCCcEEEeCCCChh-hheecCceeEEeCCCCH-HHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 99999999999999998 89999999999998 55 999999999999 8888999999999998854 66777777
Q ss_pred HHH
Q 044542 457 FLR 459 (465)
Q Consensus 457 ~~~ 459 (465)
|++
T Consensus 371 ~~~ 373 (374)
T cd03817 371 YEE 373 (374)
T ss_pred Hhc
Confidence 765
No 44
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=1.9e-37 Score=303.29 Aligned_cols=346 Identities=16% Similarity=0.221 Sum_probs=243.9
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC-Ccc---------
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH-GSV--------- 148 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--------- 148 (465)
+.||++++... +|.+.++..+++.|+++||+|++++..............+..++...... ...
T Consensus 3 ~~~~~~~~~~~------~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 76 (415)
T cd03816 3 RKRVCVLVLGD------IGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFAP 76 (415)
T ss_pred ccEEEEEEecc------cCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCccccccchHHHHHH
Confidence 44788888642 55667778899999999999999998754322211223344444443332 010
Q ss_pred --------c----cCCCCCCcEEEecCCch-----hHHh---hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCc
Q 044542 149 --------N----LNNDGAFDYVHTESVSL-----PHWR---AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGS 208 (465)
Q Consensus 149 --------~----~~~~~~~DiI~~~~~~~-----~~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (465)
. ..+..+||+||+|.... ..++ ..+.| +++++|+.+........ . ....
T Consensus 77 ~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~-~V~~~h~~~~~~~~~~~---------~-~~~~ 145 (415)
T cd03816 77 LKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTK-LIIDWHNYGYTILALKL---------G-ENHP 145 (415)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCe-EEEEcCCchHHHHhccc---------C-CCCH
Confidence 0 11456899999986421 1221 12456 99999987532111000 0 0000
Q ss_pred hhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCc--ccc---------
Q 044542 209 MTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGV--RFP--------- 277 (465)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~--~~r--------- 277 (465)
...+..++ ++..++.+|.++++|+.+++.+.+ ++.+++++.+||||. ...|.+.+.... .+.
T Consensus 146 ~~~~~~~~-----e~~~~~~ad~ii~vS~~~~~~l~~-~~~~~~ki~vI~Ng~-~~~f~p~~~~~~~~~~~~~~~~~~~~ 218 (415)
T cd03816 146 LVRLAKWY-----EKLFGRLADYNLCVTKAMKEDLQQ-FNNWKIRATVLYDRP-PEQFRPLPLEEKHELFLKLAKTFLTR 218 (415)
T ss_pred HHHHHHHH-----HHHHhhcCCEeeecCHHHHHHHHh-hhccCCCeeecCCCC-HHHceeCcHHHHHHHHHhcccccccc
Confidence 01122222 235678999999999999999988 788899999999995 445554332110 010
Q ss_pred ----cccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhh------cCCCeEEEEEeCCcchhHHHHh----c-CCeEE
Q 044542 278 ----EKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITR------DHPGVYLLVAGTGPWGRRYAEL----G-QNVKV 342 (465)
Q Consensus 278 ----~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~------~~~~~~l~ivG~g~~~~~~~~l----~-~~V~~ 342 (465)
...++..++..+++++||+.+.||++.+++|++.+++ .+|+++|+|+|+|+.++.++++ + +++.+
T Consensus 219 ~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~ 298 (415)
T cd03816 219 ELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTI 298 (415)
T ss_pred ccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEE
Confidence 0122334445677789999999999999999999875 2478999999999887666544 3 55665
Q ss_pred -cCCCChhHHHHHHHhcCeEEecc--cCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHH
Q 044542 343 -LGALEAHQLSEFYNALDVFVNPT--LRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALE 419 (465)
Q Consensus 343 -~g~v~~~~~~~~~~~aDv~v~ps--~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~ 419 (465)
.|+++.+++..+|++||+++.|+ ..+|++|++++|||+||+|||+++.++.. |++.++.+|++++ |+++++++|.
T Consensus 299 ~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~-eiv~~~~~G~lv~-d~~~la~~i~ 376 (415)
T cd03816 299 RTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCID-ELVKHGENGLVFG-DSEELAEQLI 376 (415)
T ss_pred EcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHH-HHhcCCCCEEEEC-CHHHHHHHHH
Confidence 47899999999999999999753 23478999999999999999999999988 8999999999996 9999999999
Q ss_pred HHHhC--ChHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 044542 420 LVIRD--GPKVLQRKGLACKEHALSMFTATKMASA 452 (465)
Q Consensus 420 ~ll~~--~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 452 (465)
+++++ +++.+++|++++++..+. +|++..++
T Consensus 377 ~ll~~~~~~~~~~~m~~~~~~~~~~--~~~~~~~~ 409 (415)
T cd03816 377 DLLSNFPNRGKLNSLKKGAQEESEL--RWDENWDR 409 (415)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhhhc--CHHHHHHH
Confidence 99998 378899999999998844 56655444
No 45
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=5e-37 Score=297.08 Aligned_cols=335 Identities=22% Similarity=0.246 Sum_probs=247.2
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCc----cccCCCCCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGS----VNLNNDGAF 156 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~ 156 (465)
||+++++..| ..||+++++..++++|.+.||+|.+++........................... ....+..+|
T Consensus 1 kI~~v~~~~~---~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (366)
T cd03822 1 RIALVSPYPP---RKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGP 77 (366)
T ss_pred CeEEecCCCC---CCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCC
Confidence 7999988653 579999999999999999999999999776443322211110111111111111 112267899
Q ss_pred cEEEecCC------chhHHhh-----hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHh
Q 044542 157 DYVHTESV------SLPHWRA-----KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRF 225 (465)
Q Consensus 157 DiI~~~~~------~~~~~~~-----~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (465)
|+||++.+ ....... .+.| ++.++|+.... .. ......+. ...
T Consensus 78 dii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~------------~~--------~~~~~~~~-----~~~ 131 (366)
T cd03822 78 DVVVIQHEYGIFGGEAGLYLLLLLRGLGIP-VVVTLHTVLLH------------EP--------RPGDRALL-----RLL 131 (366)
T ss_pred CEEEEeeccccccchhhHHHHHHHhhcCCC-EEEEEecCCcc------------cc--------chhhhHHH-----HHH
Confidence 99999762 1111111 4556 99999985100 00 01111111 255
Q ss_pred hcccCEEEEeC-hhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHH
Q 044542 226 FSSYNQHICIS-NSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPL 304 (465)
Q Consensus 226 ~~~~d~ii~~S-~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ 304 (465)
++.+|.++++| +..++.+.. . ..+++.++|||+|...+...... ++.....+ .++++++|++.+.||++.
T Consensus 132 ~~~~d~ii~~s~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~-~~~i~~~G~~~~~K~~~~ 202 (366)
T cd03822 132 LRRADAVIVMSSELLRALLLR-A--YPEKIAVIPHGVPDPPAEPPESL-----KALGGLDG-RPVLLTFGLLRPYKGLEL 202 (366)
T ss_pred HhcCCEEEEeeHHHHHHHHhh-c--CCCcEEEeCCCCcCcccCCchhh-----HhhcCCCC-CeEEEEEeeccCCCCHHH
Confidence 78999999996 333433333 1 14799999999998766543221 22222333 378889999999999999
Q ss_pred HHHHHHHhhhcCCCeEEEEEeCCcchhH---------HHHhc--CCeEEcCC-CChhHHHHHHHhcCeEEecccCCC--C
Q 044542 305 LYEAFSSITRDHPGVYLLVAGTGPWGRR---------YAELG--QNVKVLGA-LEAHQLSEFYNALDVFVNPTLRPQ--G 370 (465)
Q Consensus 305 ll~a~~~l~~~~~~~~l~ivG~g~~~~~---------~~~l~--~~V~~~g~-v~~~~~~~~~~~aDv~v~ps~~~e--g 370 (465)
+++|++.+.+++++++|+++|++..... +++++ ++|.++|. ++.+++.++|+.||++++||.. | +
T Consensus 203 ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~-e~~~ 281 (366)
T cd03822 203 LLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRS-ADQT 281 (366)
T ss_pred HHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccc-cccc
Confidence 9999999998889999999998654221 34444 89999987 8999999999999999999975 8 9
Q ss_pred CcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHH
Q 044542 371 LDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKM 449 (465)
Q Consensus 371 ~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~ 449 (465)
+|++++|||++|+|||+++.++ . +.+.++.+|+++++ |+++++++|.+++++ ++.+.++++++++++++ |||+++
T Consensus 282 ~~~~~~Ea~a~G~PvI~~~~~~-~-~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~-~s~~~~ 357 (366)
T cd03822 282 QSGVLAYAIGFGKPVISTPVGH-A-EEVLDGGTGLLVPPGDPAALAEAIRRLLAD-PELAQALRARAREYARA-MSWERV 357 (366)
T ss_pred cchHHHHHHHcCCCEEecCCCC-h-heeeeCCCcEEEcCCCHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHhh-CCHHHH
Confidence 9999999999999999999999 5 66778889999998 999999999999998 88999999999999988 999999
Q ss_pred HHHHHHHHH
Q 044542 450 ASAYERFFL 458 (465)
Q Consensus 450 ~~~~~~~~~ 458 (465)
++++.++|+
T Consensus 358 ~~~~~~~~~ 366 (366)
T cd03822 358 AERYLRLLA 366 (366)
T ss_pred HHHHHHHhC
Confidence 999999873
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=4.6e-37 Score=296.28 Aligned_cols=326 Identities=26% Similarity=0.364 Sum_probs=249.8
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEE----eecCC---C---cc--
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHF----AANDH---G---SV-- 148 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~----~~~~~---~---~~-- 148 (465)
||+++++.+|+ ...||+++++..++++|.++||+|++++.................... ..... . ..
T Consensus 1 kIl~i~~~~~~-~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (359)
T cd03823 1 RILVVNHLYPP-RSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDY 79 (359)
T ss_pred CeeEEcccCCc-ccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhc
Confidence 79999999875 467999999999999999999999999987655433321111111111 00000 0 00
Q ss_pred ----------ccCCCCCCcEEEecCCchh---H---HhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhh
Q 044542 149 ----------NLNNDGAFDYVHTESVSLP---H---WRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTEL 212 (465)
Q Consensus 149 ----------~~~~~~~~DiI~~~~~~~~---~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (465)
...++.+||+||++..... . ....++| ++.++|+.+.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~-~i~~~hd~~~~~~~~~-------------------- 138 (359)
T cd03823 80 DNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIP-IVLTLHDYWLICPRQG-------------------- 138 (359)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCC-EEEEEeeeeeecchhh--------------------
Confidence 0015679999999975211 1 1223467 9999998542211000
Q ss_pred hhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEE
Q 044542 213 QEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGV 292 (465)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~ 292 (465)
......|.++++|+..++.+.+. +.+..++.+++||+|...+.+... +.+ ++++++++
T Consensus 139 -----------~~~~~~d~ii~~s~~~~~~~~~~-~~~~~~~~vi~n~~~~~~~~~~~~---------~~~-~~~~~i~~ 196 (359)
T cd03823 139 -----------LFKKGGDAVIAPSRFLLDRYVAN-GLFAEKISVIRNGIDLDRAKRPRR---------APP-GGRLRFGF 196 (359)
T ss_pred -----------hhccCCCEEEEeCHHHHHHHHHc-CCCccceEEecCCcChhhcccccc---------CCC-CCceEEEE
Confidence 11123399999999999999884 445679999999999887654321 112 33488889
Q ss_pred eeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHH---hcCCeEEcCCCChhHHHHHHHhcCeEEecccCCC
Q 044542 293 AGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAE---LGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQ 369 (465)
Q Consensus 293 ~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~---l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~e 369 (465)
+|++.+.||++.++++++.+.+ ++++|+++|.++.....+. ..++|.++|+++.+++.++|+.||++++||.+.|
T Consensus 197 ~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e 274 (359)
T cd03823 197 IGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPE 274 (359)
T ss_pred EecCccccCHHHHHHHHHHHHh--cCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccC
Confidence 9999999999999999999876 6899999999876554433 2489999999999999999999999999997569
Q ss_pred CCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHH
Q 044542 370 GLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATK 448 (465)
Q Consensus 370 g~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~ 448 (465)
|+|++++|||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.+++++ ++.++++++++++.... ++
T Consensus 275 ~~~~~~~Ea~a~G~Pvi~~~~~~~~-e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~----~~ 348 (359)
T cd03823 275 NFPLVIREALAAGVPVIASDIGGMA-ELVRDGVNGLLFPPGDAEDLAAALERLIDD-PDLLERLRAGIEPPRSI----ED 348 (359)
T ss_pred CCChHHHHHHHCCCCEEECCCCCHH-HHhcCCCcEEEECCCCHHHHHHHHHHHHhC-hHHHHHHHHhHHHhhhH----HH
Confidence 9999999999999999999999998 88888889999999 999999999999998 88999999988877643 99
Q ss_pred HHHHHHHHHH
Q 044542 449 MASAYERFFL 458 (465)
Q Consensus 449 ~~~~~~~~~~ 458 (465)
++++++++|+
T Consensus 349 ~~~~~~~~~~ 358 (359)
T cd03823 349 QAEEYLKLYR 358 (359)
T ss_pred HHHHHHHHhh
Confidence 9999999986
No 47
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=280.50 Aligned_cols=343 Identities=24% Similarity=0.313 Sum_probs=261.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCccc----------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSVN---------- 149 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------- 149 (465)
++|+++++.|. |..||.+.+++.|++.|-+.||.|.+++....+...-....++..+.+.+.......
T Consensus 1 ~~i~mVsdff~--P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~ 78 (426)
T KOG1111|consen 1 SRILMVSDFFY--PSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDF 78 (426)
T ss_pred CcceeeCcccc--cCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccC
Confidence 47899998765 589999999999999999999999999988766544333444455555543321111
Q ss_pred -cC----CCCCCcEEEecCCc-------hhHHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhH
Q 044542 150 -LN----NDGAFDYVHTESVS-------LPHWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMP 217 (465)
Q Consensus 150 -~~----~~~~~DiI~~~~~~-------~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (465)
.. .+++..+||.|+.. +.+....+.. .+++=|.......... .+. .
T Consensus 79 Pllr~i~lrE~I~ivhghs~fS~lahe~l~hartMGlk-tVfTdHSlfGfad~~s------------------i~~---n 136 (426)
T KOG1111|consen 79 PLLRPILLRERIEIVHGHSPFSYLAHEALMHARTMGLK-TVFTDHSLFGFADIGS------------------ILT---N 136 (426)
T ss_pred cccchhhhhhceEEEecCChHHHHHHHHHHHHHhcCce-EEEeccccccccchhh------------------hhh---c
Confidence 00 46689999999862 2222223444 8888887432211000 000 0
Q ss_pred HHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccc
Q 044542 218 RLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLV 297 (465)
Q Consensus 218 ~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~ 297 (465)
+.+. ..+...|++||+|...++...-+-.+++.++.+|||.++.+.|.|++..+ +..+.+.++.++|+.
T Consensus 137 ~ll~--~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~---------~S~~i~~ivv~sRLv 205 (426)
T KOG1111|consen 137 KLLP--LSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADK---------PSADIITIVVASRLV 205 (426)
T ss_pred ceee--eeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCcccc---------CCCCeeEEEEEeeee
Confidence 1111 34577899999999888866554567889999999999999999966542 234437788999999
Q ss_pred cccCHHHHHHHHHHhhhcCCCeEEEEEeCCc----chhHHHHh--cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCC
Q 044542 298 RDKGHPLLYEAFSSITRDHPGVYLLVAGTGP----WGRRYAEL--GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGL 371 (465)
Q Consensus 298 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~----~~~~~~~l--~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~ 371 (465)
.+||+|.+++++.++-+++|+++|+|+|+|| .++.++++ .++|.++|.++.+++.+.|.+-|+|++||.. |.|
T Consensus 206 yrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlT-Eaf 284 (426)
T KOG1111|consen 206 YRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLT-EAF 284 (426)
T ss_pred eccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHH-HHH
Confidence 9999999999999999999999999999999 44555544 3999999999999999999999999999985 999
Q ss_pred cHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHH
Q 044542 372 DLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMAS 451 (465)
Q Consensus 372 ~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 451 (465)
+++++|||+||+|||++++||++ |++.++ .-.+.+++++++++++++.+..-+ ..-....+++.+.|+|+..++
T Consensus 285 c~~ivEAaScGL~VVsTrVGGIp-eVLP~d-~i~~~~~~~~dl~~~v~~ai~~~~----~~p~~~h~~v~~~y~w~dVa~ 358 (426)
T KOG1111|consen 285 CMVIVEAASCGLPVVSTRVGGIP-EVLPED-MITLGEPGPDDLVGAVEKAITKLR----TLPLEFHDRVKKMYSWKDVAE 358 (426)
T ss_pred HHHHHHHHhCCCEEEEeecCCcc-ccCCcc-ceeccCCChHHHHHHHHHHHHHhc----cCchhHHHHHHHhccHHHHHH
Confidence 99999999999999999999999 887766 333444489999999999887621 123455677888999999999
Q ss_pred HHHHHHHHhcCCC
Q 044542 452 AYERFFLRMKNPY 464 (465)
Q Consensus 452 ~~~~~~~~~~~~~ 464 (465)
+.+++|.++.+.+
T Consensus 359 rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 359 RTEKVYDRAATTS 371 (426)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999988765
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=6.7e-37 Score=298.27 Aligned_cols=350 Identities=24% Similarity=0.276 Sum_probs=261.9
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCc------ccCCcceEEEeecCC-Ccc-----
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHND------VHQGNLHVHFAANDH-GSV----- 148 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~------~~~~~~~v~~~~~~~-~~~----- 148 (465)
||+++++.+|+ ..||.+.++..++++|++.||+|++++.......... .......+....... ...
T Consensus 1 kIl~i~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (394)
T cd03794 1 KILILSQYFPP--ELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKR 78 (394)
T ss_pred CEEEEecccCC--ccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHH
Confidence 79999998874 4499999999999999999999999998764443321 111222222222111 100
Q ss_pred --ccC------------CCCCCcEEEecCCchh-----HHhhh--cCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCC
Q 044542 149 --NLN------------NDGAFDYVHTESVSLP-----HWRAK--MVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPG 207 (465)
Q Consensus 149 --~~~------------~~~~~DiI~~~~~~~~-----~~~~~--~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (465)
... +..+||+||++.+... ..... ++| +++.+|+.+.......... ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~~~~--------~~~- 148 (394)
T cd03794 79 LLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAP-FVLEVRDLWPESAVALGLL--------KNG- 148 (394)
T ss_pred HHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCC-EEEEehhhcchhHHHccCc--------ccc-
Confidence 000 3788999999973211 11122 456 9999998754322111000 000
Q ss_pred chhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCc
Q 044542 208 SMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVS 287 (465)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~ 287 (465)
.......... +...++.+|.++++|+..++.+. .++.+..++.++|||+|...+.+...... +.+..... ++
T Consensus 149 --~~~~~~~~~~--~~~~~~~~d~vi~~s~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~-~~ 220 (394)
T cd03794 149 --SLLYRLLRKL--ERLIYRRADAIVVISPGMREYLV-RRGVPPEKISVIPNGVDLELFKPPPADES--LRKELGLD-DK 220 (394)
T ss_pred --chHHHHHHHH--HHHHHhcCCEEEEECHHHHHHHH-hcCCCcCceEEcCCCCCHHHcCCccchhh--hhhccCCC-Cc
Confidence 0111122221 23667899999999999999998 46788899999999999877655432211 22333333 34
Q ss_pred EEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh----c-CCeEEcCCCChhHHHHHHHhcCeEE
Q 044542 288 LVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL----G-QNVKVLGALEAHQLSEFYNALDVFV 362 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l----~-~~V~~~g~v~~~~~~~~~~~aDv~v 362 (465)
++++++|++.+.||++.+++|+..+.+. ++++|+++|+|+..+.++++ . ++|.++|+++++++.++|+.||+++
T Consensus 221 ~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i 299 (394)
T cd03794 221 FVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGL 299 (394)
T ss_pred EEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeE
Confidence 8888999999999999999999999877 79999999998877666552 2 8999999999999999999999999
Q ss_pred ecccCCCC-----CcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHH
Q 044542 363 NPTLRPQG-----LDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLAC 436 (465)
Q Consensus 363 ~ps~~~eg-----~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~ 436 (465)
+|+.. |+ +|++++|||++|+|||+++.++.. +.+.++++|+++++ |+++++++|.+++.+ ++.++++++++
T Consensus 300 ~~~~~-~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~ 376 (394)
T cd03794 300 VPLKP-GPAFEGVSPSKLFEYMAAGKPVLASVDGESA-ELVEEAGAGLVVPPGDPEALAAAILELLDD-PEERAEMGENG 376 (394)
T ss_pred EeccC-cccccccCchHHHHHHHCCCcEEEecCCCch-hhhccCCcceEeCCCCHHHHHHHHHHHHhC-hHHHHHHHHHH
Confidence 99975 54 489999999999999999999998 78888889999999 999999999999988 89999999999
Q ss_pred HHHHHhhCCHHHHHHHHH
Q 044542 437 KEHALSMFTATKMASAYE 454 (465)
Q Consensus 437 ~~~~~~~fs~~~~~~~~~ 454 (465)
++++.++|||+.++++|+
T Consensus 377 ~~~~~~~~s~~~~~~~~~ 394 (394)
T cd03794 377 RRYVEEKFSREKLAERLL 394 (394)
T ss_pred HHHHHHhhcHHHHHHhcC
Confidence 999998999999998863
No 49
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=1.8e-37 Score=298.78 Aligned_cols=329 Identities=16% Similarity=0.162 Sum_probs=235.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC--CcEEEEEeCCCCCCCCC--ccc--CCcceEEEeec-CC----Ccc
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAAR--GHEIHVFTAPSDRKPHN--DVH--QGNLHVHFAAN-DH----GSV 148 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~--~~~--~~~~~v~~~~~-~~----~~~ 148 (465)
|||+++++.+| ..||+++++.+++++|.+. ||+|.+++......... ... .....+..... .. ...
T Consensus 1 mkI~~~~~~~~---~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (359)
T PRK09922 1 MKIAFIGEAVS---GFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFS 77 (359)
T ss_pred CeeEEeccccc---CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHH
Confidence 89999998763 5699999999999999999 89999998765422111 000 00011111100 00 011
Q ss_pred ccCCCCCCcEEEecCCchhH--H-hhh--cCCc-EEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHH
Q 044542 149 NLNNDGAFDYVHTESVSLPH--W-RAK--MVPN-VAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDE 222 (465)
Q Consensus 149 ~~~~~~~~DiI~~~~~~~~~--~-~~~--~~p~-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (465)
...++.+||+||+|+..... . .++ +.|. ++.+.|..... . ... ..
T Consensus 78 ~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~---------------~-------~~~-~~------ 128 (359)
T PRK09922 78 KWLKETQPDIVICIDVISCLYANKARKKSGKQFKIFSWPHFSLDH---------------K-------KHA-EC------ 128 (359)
T ss_pred HHHHhcCCCEEEEcCHHHHHHHHHHHHHhCCCCeEEEEecCcccc---------------c-------chh-hh------
Confidence 22277899999999753211 1 111 2331 44444531100 0 000 00
Q ss_pred HHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccc--ccc
Q 044542 223 IRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLV--RDK 300 (465)
Q Consensus 223 ~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~--~~K 300 (465)
..+..+|.++++|+..++.+.+ ++++.+++.++|||+|.+.+...... .+.+.+++++||+. ++|
T Consensus 129 -~~~~~~d~~i~~S~~~~~~~~~-~~~~~~ki~vi~N~id~~~~~~~~~~-----------~~~~~~i~~~Grl~~~~~k 195 (359)
T PRK09922 129 -KKITCADYHLAISSGIKEQMMA-RGISAQRISVIYNPVEIKTIIIPPPE-----------RDKPAVFLYVGRLKFEGQK 195 (359)
T ss_pred -hhhhcCCEEEEcCHHHHHHHHH-cCCCHHHEEEEcCCCCHHHccCCCcc-----------cCCCcEEEEEEEEecccCc
Confidence 1136899999999999999987 68888899999999996544321110 12236788999996 469
Q ss_pred CHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh------cCCeEEcCCCC--hhHHHHHHHhcCeEEecccCCCCCc
Q 044542 301 GHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL------GQNVKVLGALE--AHQLSEFYNALDVFVNPTLRPQGLD 372 (465)
Q Consensus 301 g~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l------~~~V~~~g~v~--~~~~~~~~~~aDv~v~ps~~~eg~~ 372 (465)
|++.+++|+..+. ++++|+++|+|+..+.++++ .++|.|+|+++ .+++.++|+.+|++++||.+ ||||
T Consensus 196 ~~~~l~~a~~~~~---~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~-Egf~ 271 (359)
T PRK09922 196 NVKELFDGLSQTT---GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKF-EGFP 271 (359)
T ss_pred CHHHHHHHHHhhC---CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcc-cCcC
Confidence 9999999999874 37999999999887766553 27899999984 37899999999999999986 9999
Q ss_pred HHHHHHHHcCCeEEecC-CCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHH
Q 044542 373 LTLIEAMHCGRTVLTPN-YPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMA 450 (465)
Q Consensus 373 ~~~~EAma~G~PvI~s~-~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 450 (465)
++++||||||+|||+++ .+|.. |++.++.+|+++++ |+++++++|.+++++ ++.+ ..++......+|+.+...
T Consensus 272 ~~~lEAma~G~Pvv~s~~~~g~~-eiv~~~~~G~lv~~~d~~~la~~i~~l~~~-~~~~---~~~~~~~~~~~~~~~~~~ 346 (359)
T PRK09922 272 MTLLEAMSYGIPCISSDCMSGPR-DIIKPGLNGELYTPGNIDEFVGKLNKVISG-EVKY---QHDAIPNSIERFYEVLYF 346 (359)
T ss_pred hHHHHHHHcCCCEEEeCCCCChH-HHccCCCceEEECCCCHHHHHHHHHHHHhC-cccC---CHHHHHHHHHHhhHHHHH
Confidence 99999999999999999 88877 89999999999998 999999999999999 5533 122333334458889999
Q ss_pred HHHHHHHHHhcC
Q 044542 451 SAYERFFLRMKN 462 (465)
Q Consensus 451 ~~~~~~~~~~~~ 462 (465)
+++.++|.++++
T Consensus 347 ~~~~~~~~~~~~ 358 (359)
T PRK09922 347 KNLNNALFSKLQ 358 (359)
T ss_pred HHHHHHHHHHhc
Confidence 999999988765
No 50
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=1.8e-36 Score=296.00 Aligned_cols=349 Identities=14% Similarity=0.120 Sum_probs=242.0
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC--CcEEEEEeCCCCCCC---------CC--cccCCcceEEE----eec
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAAR--GHEIHVFTAPSDRKP---------HN--DVHQGNLHVHF----AAN 143 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~---------~~--~~~~~~~~v~~----~~~ 143 (465)
-|+|++++. ...||+|+.++..+.+|.+. ||+|+++|....... .. +.......+.. ...
T Consensus 2 ~~~f~hp~~---~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~ 78 (419)
T cd03806 2 TVGFFHPYC---NAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLV 78 (419)
T ss_pred eEEEECCCC---CCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeee
Confidence 478888875 34459999999999999998 899999999876533 11 12222221222 111
Q ss_pred CCCccccC-----------------CCCCCcEEEecC-CchhHHh---hhcCCcEEEEecchhHHHHhhhhhhhhh-hc-
Q 044542 144 DHGSVNLN-----------------NDGAFDYVHTES-VSLPHWR---AKMVPNVAVTWHGIWYEVMHSKLFGELF-SN- 200 (465)
Q Consensus 144 ~~~~~~~~-----------------~~~~~DiI~~~~-~~~~~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~-~~- 200 (465)
....|... ...+|||++.++ +.....+ ..+.| ++..+|- +... .+...... +.
T Consensus 79 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~~~-~i~y~h~-P~~~--~d~l~~~~~~~~ 154 (419)
T cd03806 79 EASTYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLGGCP-VGAYVHY-PTIS--TDMLQKVRSREA 154 (419)
T ss_pred ccccCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhcCCe-EEEEecC-Ccch--HHHHHHHhhccc
Confidence 22223221 345799998886 3321222 12456 9999992 2110 01111100 00
Q ss_pred ----CCCC-CC---CchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCccc
Q 044542 201 ----QNGV-LP---GSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEA 272 (465)
Q Consensus 201 ----~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~ 272 (465)
.... .. ...+.+++.+... -+...++.+|.++++|++.++.+.+.++. .+++.+|+||+|.+.+.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~k~~y~~~~~~-~~~~~~~~aD~ii~~S~~~~~~~~~~~~~-~~~~~vi~~gvd~~~~~~~~~~ 232 (419)
T cd03806 155 SYNNSATIARSPVLSKAKLLYYRLFAF-LYGLAGSFADVVMVNSTWTRNHIRSLWKR-NTKPSIVYPPCDVEELLKLPLD 232 (419)
T ss_pred cccCccchhccchHHHHHHHHHHHHHH-HHHHHhhcCCEEEECCHHHHHHHHHHhCc-CCCcEEEcCCCCHHHhcccccc
Confidence 0000 00 1122222222222 23467899999999999999999987654 3589999999998776543210
Q ss_pred CcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCC-----CeEEEEEeCCcc------hhHHHH----hc
Q 044542 273 GVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHP-----GVYLLVAGTGPW------GRRYAE----LG 337 (465)
Q Consensus 273 ~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~-----~~~l~ivG~g~~------~~~~~~----l~ 337 (465)
..++..+++++||+.+.||++.+++|++.+.+..| +++|+|+|++.. .+.+++ ++
T Consensus 233 ----------~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~ 302 (419)
T cd03806 233 ----------EKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELG 302 (419)
T ss_pred ----------cccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhC
Confidence 01223678899999999999999999999988765 499999998632 223333 22
Q ss_pred --CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeee---eCCceEEeCCCHH
Q 044542 338 --QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVV---NEELGYTFSPNVK 412 (465)
Q Consensus 338 --~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~---~~~~G~l~~~d~~ 412 (465)
++|+|+|.++.+++..+|+.||++++|+.. |+||++++|||+||+|||+++.||..++++. ++.+|++++ |++
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~-E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~-d~~ 380 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASIGLHTMWN-EHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLAS-TAE 380 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeEEEECCcc-CCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeC-CHH
Confidence 799999999999999999999999999975 9999999999999999999999876557887 899999987 999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHH
Q 044542 413 SFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMAS 451 (465)
Q Consensus 413 ~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 451 (465)
+++++|.++++++++.++.+ .++++.+.++||++++.+
T Consensus 381 ~la~ai~~ll~~~~~~~~~~-~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 381 EYAEAIEKILSLSEEERLRI-RRAARSSVKRFSDEEFER 418 (419)
T ss_pred HHHHHHHHHHhCCHHHHHHH-HHHHHHHHHhhCHHHhcc
Confidence 99999999999845555555 555555777799998754
No 51
>PLN00142 sucrose synthase
Probab=100.00 E-value=5.1e-37 Score=308.81 Aligned_cols=364 Identities=15% Similarity=0.119 Sum_probs=247.5
Q ss_pred ceeEEEEeC-CC------CCCCCCChHHHHHHHHH--------HHHHhCCcEE----EEEeCCCCCCCCC------cccC
Q 044542 79 KLKLAVFSK-TW------PIGAAPGGMERHASTLY--------HALAARGHEI----HVFTAPSDRKPHN------DVHQ 133 (465)
Q Consensus 79 ~mkIl~v~~-~~------p~~~~~gG~~~~~~~l~--------~~L~~~G~~V----~v~~~~~~~~~~~------~~~~ 133 (465)
-|||++++. .+ ..++..||-..++.+++ +.|+++||+| .|+|....+.... +...
T Consensus 279 ~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~ 358 (815)
T PLN00142 279 VFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVS 358 (815)
T ss_pred hHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceecc
Confidence 379999985 33 23456788877886544 6777889977 4888765433211 1222
Q ss_pred C--cceEEEeecCCC-----cc-------ccC--------------CCCCCcEEEecCCc--hhHH-h--hhcCCcEEEE
Q 044542 134 G--NLHVHFAANDHG-----SV-------NLN--------------NDGAFDYVHTESVS--LPHW-R--AKMVPNVAVT 180 (465)
Q Consensus 134 ~--~~~v~~~~~~~~-----~~-------~~~--------------~~~~~DiI~~~~~~--~~~~-~--~~~~p~~v~~ 180 (465)
. +..+...+..+. .| .+. ...+||+||+|.+. +.+. + ..++| .+.+
T Consensus 359 ~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP-~v~T 437 (815)
T PLN00142 359 GTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVT-QCTI 437 (815)
T ss_pred CCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCC-EEEE
Confidence 2 222222222111 01 111 23469999999762 2222 2 34789 9999
Q ss_pred ecchhHHHH-hhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHH-------HHHH------
Q 044542 181 WHGIWYEVM-HSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEV-------LVKI------ 246 (465)
Q Consensus 181 ~h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~-------~~~~------ 246 (465)
.|....... +++.+. ... ...+....++..+...+..||.||+.|...... +..+
T Consensus 438 ~HsL~k~K~~~~~~~~---~~~--------e~~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p 506 (815)
T PLN00142 438 AHALEKTKYPDSDIYW---KKF--------DDKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLP 506 (815)
T ss_pred cccchhhhccccCCcc---ccc--------chhhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccc
Confidence 997532211 000000 000 011222223334556788999999988766532 1121
Q ss_pred ------hCC--CCCCEEEecCCCCCCCccCCcccCc-----------------ccccccCCC-CCCcEEEEEeecccccc
Q 044542 247 ------YQL--PQRNVHVILNGVDETKFVHDPEAGV-----------------RFPEKLGVP-ANVSLVMGVAGRLVRDK 300 (465)
Q Consensus 247 ------~~~--~~~ki~vi~ngvd~~~~~~~~~~~~-----------------~~r~~~g~~-~~~~~~l~~~Grl~~~K 300 (465)
.|+ ...++.+||+|+|...|.|...... ..++.+|+. +.++.+|+++||+.+.|
T Consensus 507 ~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~K 586 (815)
T PLN00142 507 GLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVK 586 (815)
T ss_pred hhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccC
Confidence 122 2559999999999998875332111 123345652 22235677999999999
Q ss_pred CHHHHHHHHHHhhhcCCCeEEEEEeCCc------chh------HH----HHhc--CCeEEcCCC----ChhHHHHHHH-h
Q 044542 301 GHPLLYEAFSSITRDHPGVYLLVAGTGP------WGR------RY----AELG--QNVKVLGAL----EAHQLSEFYN-A 357 (465)
Q Consensus 301 g~~~ll~a~~~l~~~~~~~~l~ivG~g~------~~~------~~----~~l~--~~V~~~g~v----~~~~~~~~~~-~ 357 (465)
|++.+++|+.++.+..++++|+|+|+|. ..+ .+ ++++ ++|.|+|.. +.+++..+++ +
T Consensus 587 Gid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iada 666 (815)
T PLN00142 587 NLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADT 666 (815)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhh
Confidence 9999999999987766789999999862 111 12 2222 789999854 3367777776 4
Q ss_pred cCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHH----hCChHHHHHH
Q 044542 358 LDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVI----RDGPKVLQRK 432 (465)
Q Consensus 358 aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll----~~~~~~~~~~ 432 (465)
+|++++||.+ |+||++++|||+||+|||+|+.||.+ |++.++.+|+++++ |+++++++|.+++ .| ++.+++|
T Consensus 667 aDVfVlPS~~-EgFGLvvLEAMA~GlPVVATdvGG~~-EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~D-p~lr~~m 743 (815)
T PLN00142 667 KGAFVQPALY-EAFGLTVVEAMTCGLPTFATCQGGPA-EIIVDGVSGFHIDPYHGDEAANKIADFFEKCKED-PSYWNKI 743 (815)
T ss_pred CCEEEeCCcc-cCCCHHHHHHHHcCCCEEEcCCCCHH-HHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCC-HHHHHHH
Confidence 7999999986 99999999999999999999999998 99999999999999 9999999987754 56 8999999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHH
Q 044542 433 GLACKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 433 ~~~~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
+++|++++.++|||+.++++++++.
T Consensus 744 g~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 744 SDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 52
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=4.2e-36 Score=288.79 Aligned_cols=337 Identities=16% Similarity=0.131 Sum_probs=232.9
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCC-cEEEEEeCCCCCCCC---------------Cc--c-cCCcceE
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARG-HEIHVFTAPSDRKPH---------------ND--V-HQGNLHV 138 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~---------------~~--~-~~~~~~v 138 (465)
++|||++++..|+ |..+|.......++..|+++| |+|+|+.+....... .+ + ......+
T Consensus 3 ~~mrIaivTdt~l--P~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v 80 (462)
T PLN02846 3 KKQHIAIFTTASL--PWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERI 80 (462)
T ss_pred CCCEEEEEEcCCC--CCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeE
Confidence 4699999999987 589999999999999999999 899999986432110 00 0 0001111
Q ss_pred -EEe--e--cCCCcc--------------ccCCCCCCcEEEecCCchhHHh-------hhcCCcEEEEecchhHHHHhhh
Q 044542 139 -HFA--A--NDHGSV--------------NLNNDGAFDYVHTESVSLPHWR-------AKMVPNVAVTWHGIWYEVMHSK 192 (465)
Q Consensus 139 -~~~--~--~~~~~~--------------~~~~~~~~DiI~~~~~~~~~~~-------~~~~p~~v~~~h~~~~~~~~~~ 192 (465)
.+. + ..++.+ ...++.+|||||++++....|. .+..+ ++.++|.....+.+.
T Consensus 81 ~r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~-vV~tyHT~y~~Y~~~- 158 (462)
T PLN02846 81 SFLPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRL-VIGIVHTNYLEYVKR- 158 (462)
T ss_pred EEecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCc-EEEEECCChHHHHHH-
Confidence 111 1 111110 1116789999999998655554 11234 777899744322211
Q ss_pred hhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCccc
Q 044542 193 LFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEA 272 (465)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~ 272 (465)
+.. ......+.+.+.+... + ..+|.++++|+...+ +.+ .+...++|||.+.|.+....
T Consensus 159 -~~~---------g~~~~~l~~~~~~~~~--r--~~~d~vi~pS~~~~~-l~~-------~~i~~v~GVd~~~f~~~~~~ 216 (462)
T PLN02846 159 -EKN---------GRVKAFLLKYINSWVV--D--IYCHKVIRLSAATQD-YPR-------SIICNVHGVNPKFLEIGKLK 216 (462)
T ss_pred -hcc---------chHHHHHHHHHHHHHH--H--HhcCEEEccCHHHHH-Hhh-------CEEecCceechhhcCCCccc
Confidence 000 0001122222222221 1 237999999986554 332 24445689999988765432
Q ss_pred CcccccccCCCCCC-cEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhc-----CCeEEcCCC
Q 044542 273 GVRFPEKLGVPANV-SLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELG-----QNVKVLGAL 346 (465)
Q Consensus 273 ~~~~r~~~g~~~~~-~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~-----~~V~~~g~v 346 (465)
.++.++ +.+. ..+++|+||+..+||++.+++|++++.+..++++|+|+|+|+.++.++++. +...|.|..
T Consensus 217 ---~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~ 292 (462)
T PLN02846 217 ---LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRD 292 (462)
T ss_pred ---HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCC
Confidence 222222 2222 235779999999999999999999998877899999999999988877654 223477765
Q ss_pred ChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCCh
Q 044542 347 EAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGP 426 (465)
Q Consensus 347 ~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~ 426 (465)
+ ..++|+.+|++|+||.. |++|++++||||||+|||+++.++ . +++.++.+|++++ |.+++++++.+++.+++
T Consensus 293 ~---~~~~~~~~DvFv~pS~~-Et~g~v~lEAmA~G~PVVa~~~~~-~-~~v~~~~ng~~~~-~~~~~a~ai~~~l~~~~ 365 (462)
T PLN02846 293 H---ADPLFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPS-N-EFFKQFPNCRTYD-DGKGFVRATLKALAEEP 365 (462)
T ss_pred C---HHHHHHhCCEEEECCCc-ccchHHHHHHHHcCCcEEEecCCC-c-ceeecCCceEecC-CHHHHHHHHHHHHccCc
Confidence 3 34799999999999986 999999999999999999999997 4 8899999999996 89999999999998733
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 044542 427 KVLQRKGLACKEHALSMFTATKMASAYERFFL 458 (465)
Q Consensus 427 ~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 458 (465)
+ .++.+++ +.|||+..+++++++|+
T Consensus 366 ~---~~~~~a~----~~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 366 A---PLTDAQR----HELSWEAATERFLRVAD 390 (462)
T ss_pred h---hHHHHHH----HhCCHHHHHHHHHHHhc
Confidence 2 2233322 36999999999999986
No 53
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=3.4e-37 Score=297.70 Aligned_cols=328 Identities=20% Similarity=0.262 Sum_probs=240.1
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC-cccCCcceEEEeecC-CCcccc-------C
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN-DVHQGNLHVHFAAND-HGSVNL-------N 151 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~v~~~~~~-~~~~~~-------~ 151 (465)
||+++++.+ ..||.++++.+++++|.+.||+|++++......... .....+..+...... ...+.+ .
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLI 76 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCccHHHHHHHHHHHH
Confidence 799999875 579999999999999999999999999876543211 122222222222211 111111 1
Q ss_pred CCCCCcEEEecCCch---hHHhh--hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhh
Q 044542 152 NDGAFDYVHTESVSL---PHWRA--KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFF 226 (465)
Q Consensus 152 ~~~~~DiI~~~~~~~---~~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (465)
++.+||+||+|.... ...+. .+.|..+...|+...... . ....... ...+..+.
T Consensus 77 ~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------~----~~~~~~~----~~~~~~~~ 135 (358)
T cd03812 77 KKNKYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSHD-------------K----KKKILKY----KVLRKLIN 135 (358)
T ss_pred hcCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEEecccccccc-------------c----cchhhHH----HHHHHHHH
Confidence 678999999998632 12222 234535667776432100 0 0000000 11122556
Q ss_pred cccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHH
Q 044542 227 SSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLY 306 (465)
Q Consensus 227 ~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll 306 (465)
+.++.++++|+...+.+.+. .+..++.+||||+|.+.+.+....+.. +++++...+. ++++++||+.+.||++.++
T Consensus 136 ~~~~~~i~~s~~~~~~~~~~--~~~~~~~vi~ngvd~~~~~~~~~~~~~-~~~~~~~~~~-~~i~~vGr~~~~Kg~~~li 211 (358)
T cd03812 136 RLATDYLACSEEAGKWLFGK--VKNKKFKVIPNGIDLEKFIFNEEIRKK-RRELGILEDK-FVIGHVGRFSEQKNHEFLI 211 (358)
T ss_pred hcCCEEEEcCHHHHHHHHhC--CCcccEEEEeccCcHHHcCCCchhhhH-HHHcCCCCCC-EEEEEEeccccccChHHHH
Confidence 88999999999999998775 567899999999999877654432222 4445555554 8888999999999999999
Q ss_pred HHHHHhhhcCCCeEEEEEeCCcchhHHHHh----c--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHH
Q 044542 307 EAFSSITRDHPGVYLLVAGTGPWGRRYAEL----G--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMH 380 (465)
Q Consensus 307 ~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l----~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma 380 (465)
+|+..+.+++++++++|+|+|+..+.+++. + ++|.++|+ .+++.++|+.||++++||.. ||+|++++|||+
T Consensus 212 ~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~-E~~~~~~lEAma 288 (358)
T cd03812 212 EIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSLY-EGLPLVLIEAQA 288 (358)
T ss_pred HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEecccc-cCCCHHHHHHHH
Confidence 999999988899999999999876655443 2 78999999 47899999999999999976 999999999999
Q ss_pred cCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhh
Q 044542 381 CGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSM 443 (465)
Q Consensus 381 ~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 443 (465)
+|+|||+++.||.+ +++.+ ..|++..+ ++++++++|.+++++ ++.++.++..++......
T Consensus 289 ~G~PvI~s~~~~~~-~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~-~~~~~~~~~~~~~~~~~~ 349 (358)
T cd03812 289 SGLPCILSDTITKE-VDLTD-LVKFLSLDESPEIWAEEILKLKSE-DRRERSSESIKKKGLDAD 349 (358)
T ss_pred hCCCEEEEcCCchh-hhhcc-CccEEeCCCCHHHHHHHHHHHHhC-cchhhhhhhhhhccchhh
Confidence 99999999999998 77777 45666665 789999999999999 788888877776665543
No 54
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=6.5e-36 Score=286.41 Aligned_cols=324 Identities=23% Similarity=0.305 Sum_probs=244.8
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC------------Ccc
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH------------GSV 148 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~ 148 (465)
||++++..+. ..||.++.+..++++|.+.||+|++++.............. ..+....... ...
T Consensus 1 kI~i~~~~~~---~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (348)
T cd03820 1 KILFVIPSLG---NAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPK-IKVIDLGDKRDSKLLARFKKLRRLR 76 (348)
T ss_pred CeEEEecccc---CCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCc-cceeecccccccchhccccchHHHH
Confidence 6899998763 27999999999999999999999999988765111111111 1111111110 011
Q ss_pred ccCCCCCCcEEEecCCc---hhHHhhhcC-CcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHH
Q 044542 149 NLNNDGAFDYVHTESVS---LPHWRAKMV-PNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIR 224 (465)
Q Consensus 149 ~~~~~~~~DiI~~~~~~---~~~~~~~~~-p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (465)
...+..+||+|+++... ......... | ++...|+........ ..... .+..
T Consensus 77 ~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~-------------------~~~~~-----~~~~ 131 (348)
T cd03820 77 KLLKNNKPDVVISFLTSLLTFLASLGLKIVK-LIVSEHNSPDAYKKR-------------------LRRLL-----LRRL 131 (348)
T ss_pred HhhcccCCCEEEEcCchHHHHHHHHhhcccc-EEEecCCCccchhhh-------------------hHHHH-----HHHH
Confidence 11166899999999864 222333343 5 888888753221100 00000 2336
Q ss_pred hhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHH
Q 044542 225 FFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPL 304 (465)
Q Consensus 225 ~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ 304 (465)
.++.+|.++++|+..+.. ....+..++.++|||++...+... .+ ++...++++|++.+.||++.
T Consensus 132 ~~~~~d~ii~~s~~~~~~---~~~~~~~~~~vi~~~~~~~~~~~~------------~~-~~~~~i~~~g~~~~~K~~~~ 195 (348)
T cd03820 132 LYRRADAVVVLTEEDRAL---YYKKFNKNVVVIPNPLPFPPEEPS------------SD-LKSKRILAVGRLVPQKGFDL 195 (348)
T ss_pred HHhcCCEEEEeCHHHHHH---hhccCCCCeEEecCCcChhhcccc------------CC-CCCcEEEEEEeeccccCHHH
Confidence 788999999999998822 234567899999999998765433 01 22367789999999999999
Q ss_pred HHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh----c--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHH
Q 044542 305 LYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL----G--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEA 378 (465)
Q Consensus 305 ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l----~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EA 378 (465)
++++++.+.+..++++|+++|+++..+.++++ + ++|.+.|. .+++.++|+.||++++||.. ||+|++++||
T Consensus 196 l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~-e~~~~~~~Ea 272 (348)
T cd03820 196 LIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRF-EGFPMVLLEA 272 (348)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccc-cccCHHHHHH
Confidence 99999999888899999999998877665542 2 78999998 48999999999999999986 9999999999
Q ss_pred HHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 044542 379 MHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYE 454 (465)
Q Consensus 379 ma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 454 (465)
|++|+|||+++.++..++++.++.+|+++++ |+++++++|.+++++ ++.++++++++++.+ +.|+|++++++|.
T Consensus 273 ~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 347 (348)
T cd03820 273 MAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMED-EELRKRMGANARESA-ERFSIENIIKQWE 347 (348)
T ss_pred HHcCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH-HHhCHHHHHHHhc
Confidence 9999999999987655477777779999998 999999999999998 999999999997766 4599999999885
No 55
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=3.4e-36 Score=291.30 Aligned_cols=344 Identities=28% Similarity=0.412 Sum_probs=262.4
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCc-------ceEEEe-ecCCCc------
Q 044542 82 LAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGN-------LHVHFA-ANDHGS------ 147 (465)
Q Consensus 82 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-------~~v~~~-~~~~~~------ 147 (465)
|+++++.+|+ ...||.+.++..++++|.+.||+|++++............... ...... ......
T Consensus 1 iLii~~~~p~-~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (377)
T cd03798 1 ILVISSLYPP-PNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLA 79 (377)
T ss_pred CeEeccCCCC-CCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHH
Confidence 6888988874 2379999999999999999999999999876554333211100 000000 000000
Q ss_pred ----cccCC--CCCCcEEEecCCchhHH----hhh--cCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhh
Q 044542 148 ----VNLNN--DGAFDYVHTESVSLPHW----RAK--MVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEA 215 (465)
Q Consensus 148 ----~~~~~--~~~~DiI~~~~~~~~~~----~~~--~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (465)
....+ ..++|+||++....... +.+ ++| ++...|+......... . .
T Consensus 80 ~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~------------------~---~ 137 (377)
T cd03798 80 ARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIP-LVVTLHGSDVNLLPRK------------------R---L 137 (377)
T ss_pred HHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCC-EEEEeecchhcccCch------------------h---h
Confidence 00115 88999999996432222 222 346 9999998654311100 0 1
Q ss_pred hHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeec
Q 044542 216 MPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGR 295 (465)
Q Consensus 216 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Gr 295 (465)
... .+...++++|.++++|+..++.+.+.+ .+..++.++|||+|...+.+...... .+.+...+ +++++++|+
T Consensus 138 ~~~--~~~~~~~~~d~ii~~s~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~i~~~g~ 210 (377)
T cd03798 138 LRA--LLRRALRRADAVIAVSEALADELKALG-IDPEKVTVIPNGVDTERFSPADRAEA---RKLGLPED-KKVILFVGR 210 (377)
T ss_pred HHH--HHHHHHhcCCeEEeCCHHHHHHHHHhc-CCCCceEEcCCCcCcccCCCcchHHH---HhccCCCC-ceEEEEecc
Confidence 111 122667899999999999999999854 67899999999999887765433211 22223333 478889999
Q ss_pred cccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh------cCCeEEcCCCChhHHHHHHHhcCeEEecccCCC
Q 044542 296 LVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL------GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQ 369 (465)
Q Consensus 296 l~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l------~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~e 369 (465)
+.+.||++.+++++..+.+++++++++++|.++..+.++++ .++|.+.|+++++++.++|+.||++++|+.. |
T Consensus 211 ~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~-~ 289 (377)
T cd03798 211 LVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLR-E 289 (377)
T ss_pred CccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhh-c
Confidence 99999999999999999888889999999998776655443 2799999999999999999999999999986 9
Q ss_pred CCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHH
Q 044542 370 GLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATK 448 (465)
Q Consensus 370 g~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~ 448 (465)
++|++++|||++|+|||+++.++.. +++.++..|+++++ |+++++++|.+++++ ++. +++.++++.+.++|+|+.
T Consensus 290 ~~~~~~~Ea~~~G~pvI~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~--~~~~~~~~~~~~~~s~~~ 365 (377)
T cd03798 290 GFGLVLLEAMACGLPVVATDVGGIP-EIITDGENGLLVPPGDPEALAEAILRLLAD-PWL--RLGRAARRRVAERFSWEN 365 (377)
T ss_pred cCChHHHHHHhcCCCEEEecCCChH-HHhcCCcceeEECCCCHHHHHHHHHHHhcC-cHH--HHhHHHHHHHHHHhhHHH
Confidence 9999999999999999999999998 88899989999999 999999999999998 555 788889999999999999
Q ss_pred HHHHHHHHHHHh
Q 044542 449 MASAYERFFLRM 460 (465)
Q Consensus 449 ~~~~~~~~~~~~ 460 (465)
+++++.++|+++
T Consensus 366 ~~~~~~~~~~~l 377 (377)
T cd03798 366 VAERLLELYREV 377 (377)
T ss_pred HHHHHHHHHhhC
Confidence 999999999764
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=3.4e-35 Score=282.72 Aligned_cols=331 Identities=27% Similarity=0.372 Sum_probs=251.3
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC---Cccc--------
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH---GSVN-------- 149 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~-------- 149 (465)
||+++++. .||.+.++..++++|.+.||+|++++....... .....+..+...+... ..+.
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE--ELEALGVKVIPIPLDRRGINPFKDLKALLRL 72 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc--ccccCCceEEeccccccccChHhHHHHHHHH
Confidence 68899874 489999999999999999999999998765543 1112222222222211 1110
Q ss_pred --cCCCCCCcEEEecCCch--hHH-hh--hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHH
Q 044542 150 --LNNDGAFDYVHTESVSL--PHW-RA--KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDE 222 (465)
Q Consensus 150 --~~~~~~~DiI~~~~~~~--~~~-~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (465)
..++.+||+||++.... ... .. ...+.++...|+.......... .......+ +
T Consensus 73 ~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------~~~~~~~~-----~ 132 (359)
T cd03808 73 YRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTSGGL---------------KRRLYLLL-----E 132 (359)
T ss_pred HHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhccchh---------------HHHHHHHH-----H
Confidence 11678999999986421 111 12 2344488888876433111100 01112222 2
Q ss_pred HHhhcccCEEEEeChhHHHHHHHHhCCC-CCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccC
Q 044542 223 IRFFSSYNQHICISNSAAEVLVKIYQLP-QRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKG 301 (465)
Q Consensus 223 ~~~~~~~d~ii~~S~~~~~~~~~~~~~~-~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg 301 (465)
+..++.+|.++++|+...+.+.+.+..+ ..++.++++|+|.+.+.+.... ..+++++++++|++.+.||
T Consensus 133 ~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~~~G~~~~~k~ 202 (359)
T cd03808 133 RLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP----------IPEDDPVFLFVARLLKDKG 202 (359)
T ss_pred HHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc----------cCCCCcEEEEEeccccccC
Confidence 3567888999999999999999865443 4678888999998776554321 1133478889999999999
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHH-----Hhc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHH
Q 044542 302 HPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYA-----ELG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLT 374 (465)
Q Consensus 302 ~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~-----~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~ 374 (465)
++.+++++..+.+++++++|+++|.+......+ ++. ++|.+.|+. +++.++|+.||++++||.. ||+|++
T Consensus 203 ~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~i~ps~~-e~~~~~ 279 (359)
T cd03808 203 IDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFR--DDVPELLAAADVFVLPSYR-EGLPRV 279 (359)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeecc--ccHHHHHHhccEEEecCcc-cCcchH
Confidence 999999999998878899999999987654433 322 789999994 7999999999999999986 999999
Q ss_pred HHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 044542 375 LIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAY 453 (465)
Q Consensus 375 ~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 453 (465)
++|||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.+++.+ ++.+.++++++++++.++|+|+.+++++
T Consensus 280 ~~Ea~~~G~Pvi~s~~~~~~-~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 357 (359)
T cd03808 280 LLEAMAMGRPVIATDVPGCR-EAVIDGVNGFLVPPGDAEALADAIERLIED-PELRARMGQAARKRAEEEFDEEIVVKKL 357 (359)
T ss_pred HHHHHHcCCCEEEecCCCch-hhhhcCcceEEECCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 99999999999999999998 88888999999998 899999999999998 8999999999999999999999999987
Q ss_pred H
Q 044542 454 E 454 (465)
Q Consensus 454 ~ 454 (465)
.
T Consensus 358 ~ 358 (359)
T cd03808 358 L 358 (359)
T ss_pred h
Confidence 6
No 57
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=5.4e-35 Score=280.44 Aligned_cols=327 Identities=22% Similarity=0.317 Sum_probs=247.5
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCc--ceEEEee-cCCCcc-------cc
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGN--LHVHFAA-NDHGSV-------NL 150 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~--~~v~~~~-~~~~~~-------~~ 150 (465)
||+++++.+ ..||.++++..++++|.+.||+|++++............... ....... .....+ ..
T Consensus 1 kIl~~~~~~----~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (353)
T cd03811 1 KILFVIPSL----GGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRL 76 (353)
T ss_pred CeEEEeecc----cCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHH
Confidence 689999876 369999999999999999999999999876554333211111 0011111 100111 11
Q ss_pred CCCCCCcEEEecCC-c--hhHHhhh--cCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHh
Q 044542 151 NNDGAFDYVHTESV-S--LPHWRAK--MVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRF 225 (465)
Q Consensus 151 ~~~~~~DiI~~~~~-~--~~~~~~~--~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (465)
.+..+||+||++.. . +...+.. +.| .+.+.|+.......... ... ..+...
T Consensus 77 ~~~~~~dii~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~-----------------~~~------~~~~~~ 132 (353)
T cd03811 77 LRKEKPDVVISHLTTTPNVLALLAARLGTK-LIVWEHNSLSLELKRKL-----------------RLL------LLIRKL 132 (353)
T ss_pred HHhcCCCEEEEcCccchhHHHHHHhhcCCc-eEEEEcCcchhhhccch-----------------hHH------HHHHhh
Confidence 16779999999975 2 1222222 356 99999987643221100 000 223367
Q ss_pred hcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHH
Q 044542 226 FSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLL 305 (465)
Q Consensus 226 ~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~l 305 (465)
++.+|.++++|+..++.+.+.++.+..++.++|||+|...+.+...... +.+...+ +++++++|++.+.||++.+
T Consensus 133 ~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~-~~~i~~~g~~~~~k~~~~~ 207 (353)
T cd03811 133 YRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL----ELGIPPD-GPVILAVGRLSPQKGFDTL 207 (353)
T ss_pred ccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh----hcCCCCC-ceEEEEEecchhhcChHHH
Confidence 8999999999999999999988776789999999999887755433211 2223333 4888899999999999999
Q ss_pred HHHHHHhhhcCCCeEEEEEeCCcchhHHHH----hc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHH
Q 044542 306 YEAFSSITRDHPGVYLLVAGTGPWGRRYAE----LG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAM 379 (465)
Q Consensus 306 l~a~~~l~~~~~~~~l~ivG~g~~~~~~~~----l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAm 379 (465)
++++..+.+++++++|+++|.++..+.+++ ++ ++|.+.|++ +++.++|+.||++++||.. ||+|++++|||
T Consensus 208 i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~i~ps~~-e~~~~~~~Ea~ 284 (353)
T cd03811 208 IRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQ--SNPYPYLKAADLFVLSSRY-EGFPNVLLEAM 284 (353)
T ss_pred HHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEeccc--CCHHHHHHhCCEEEeCccc-CCCCcHHHHHH
Confidence 999999998888999999999877665543 22 789999997 5789999999999999986 99999999999
Q ss_pred HcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHH---HHHHHHHHhCChHHHHHHHHHHHHHHHhhCC
Q 044542 380 HCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSF---VEALELVIRDGPKVLQRKGLACKEHALSMFT 445 (465)
Q Consensus 380 a~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~l---a~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs 445 (465)
++|+|||+++.++.. +++.++.+|+++++ |++++ ++++..+..+ ++.++++++++++.+.++|+
T Consensus 285 ~~G~PvI~~~~~~~~-e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 285 ALGTPVVATDCPGPR-EILEDGENGLLVPVGDEAALAAAALALLDLLLD-PELRERLAAAARERVAREYS 352 (353)
T ss_pred HhCCCEEEcCCCChH-HHhcCCCceEEECCCCHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998 89999999999998 89898 7778888887 88888999888888888776
No 58
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=2.9e-34 Score=280.09 Aligned_cols=216 Identities=24% Similarity=0.334 Sum_probs=190.2
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHH
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHP 303 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~ 303 (465)
..++++|.++++|+..++.+.+.++...+++.+++||++...+.+.. ..++++.++++|++.+.||++
T Consensus 179 ~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~------------~~~~~~~il~~Grl~~~Kg~~ 246 (407)
T cd04946 179 YLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISKP------------SKDDTLRIVSCSYLVPVKRVD 246 (407)
T ss_pred HHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccccCCC------------CCCCCEEEEEeeccccccCHH
Confidence 44689999999999999999998988889999999999976554321 112347888999999999999
Q ss_pred HHHHHHHHhhhcCC--CeEEEEEeCCcchhHHHHhc------CCeEEcCCCChhHHHHHHHh--cCeEEecccCCCCCcH
Q 044542 304 LLYEAFSSITRDHP--GVYLLVAGTGPWGRRYAELG------QNVKVLGALEAHQLSEFYNA--LDVFVNPTLRPQGLDL 373 (465)
Q Consensus 304 ~ll~a~~~l~~~~~--~~~l~ivG~g~~~~~~~~l~------~~V~~~g~v~~~~~~~~~~~--aDv~v~ps~~~eg~~~ 373 (465)
.+++|+..+.+++| +++++++|+|+..+.++++. ++|.|+|+++++++.++|+. +|++++||.. ||+|+
T Consensus 247 ~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~-Eg~p~ 325 (407)
T cd04946 247 LIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSES-EGLPV 325 (407)
T ss_pred HHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCcc-ccccH
Confidence 99999999988776 56778899998776665442 68999999999999999976 7889999975 99999
Q ss_pred HHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC--CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHH
Q 044542 374 TLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP--NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMAS 451 (465)
Q Consensus 374 ~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~--d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 451 (465)
+++|||++|+|||+|++||.+ |++.++.+|+++++ |+++++++|.+++++ ++.+++|+++|+++++++|+++...+
T Consensus 326 ~llEAma~G~PVIas~vgg~~-e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~-~~~~~~m~~~ar~~~~~~f~~~~~~~ 403 (407)
T cd04946 326 SIMEAMSFGIPVIATNVGGTP-EIVDNGGNGLLLSKDPTPNELVSSLSKFIDN-EEEYQTMREKAREKWEENFNASKNYR 403 (407)
T ss_pred HHHHHHHcCCCEEeCCCCCcH-HHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcCHHHhHH
Confidence 999999999999999999998 89999989999985 799999999999998 89999999999999999999999988
Q ss_pred HHH
Q 044542 452 AYE 454 (465)
Q Consensus 452 ~~~ 454 (465)
++.
T Consensus 404 ~~~ 406 (407)
T cd04946 404 EFA 406 (407)
T ss_pred Hhc
Confidence 875
No 59
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=1.3e-34 Score=278.70 Aligned_cols=332 Identities=21% Similarity=0.237 Sum_probs=227.8
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecC---C-----------C
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAAND---H-----------G 146 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~---~-----------~ 146 (465)
||+++++.++ ..||+|+.+.++++.|.+. +|..+............. ........... . .
T Consensus 1 ~i~~~~~~~~---~~GG~E~~~~~l~~~l~~~--~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (351)
T cd03804 1 KVAIVHDWLV---NIGGGEKVVEALARLFPDA--DIFTLVDDPDKLPRLLRL-KKIRTSFIQKLPFARRRYRKYLPLMPL 74 (351)
T ss_pred CEEEEEeccc---cCCCHHHHHHHHHHhCCCC--CEEEEeecCCccchhhcC-CceeechhhhchhhHhhHhhhCchhhH
Confidence 6999998773 5699999999999998764 333332222111111000 00000000000 0 0
Q ss_pred ccccCCCCCCcEEEecCCchhHHh--hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHH
Q 044542 147 SVNLNNDGAFDYVHTESVSLPHWR--AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIR 224 (465)
Q Consensus 147 ~~~~~~~~~~DiI~~~~~~~~~~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (465)
.+......++|+|++++....... ....| .+..+|......+ +.......................+.+. +..
T Consensus 75 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~-~~~~~h~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 149 (351)
T cd03804 75 AIEQFDLSGYDLVISSSHAVAKGVITRPDQL-HICYCHTPMRYAW--DLYHDYLKESGLGKRLALRLLLHYLRIW--DRR 149 (351)
T ss_pred HHHhccccCCCEEEEcCcHHhccccCCCCCc-EEEEeCCchHHHh--cCchHhhhhcccchhhHHHHHHHHHHHH--HHH
Confidence 011114678999999876443332 23456 7778886422111 1111111111000111111222222222 336
Q ss_pred hhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHH
Q 044542 225 FFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPL 304 (465)
Q Consensus 225 ~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ 304 (465)
.++++|.++++|+.+++.+.+.++ .+..+++||+|.+.+.+... .+ ..++++|++.+.||++.
T Consensus 150 ~~~~~d~ii~~S~~~~~~~~~~~~---~~~~vi~~~~d~~~~~~~~~-------------~~-~~il~~G~~~~~K~~~~ 212 (351)
T cd03804 150 SAARVDYFIANSRFVARRIKKYYG---RDATVIYPPVDTDRFTPAEE-------------KE-DYYLSVGRLVPYKRIDL 212 (351)
T ss_pred HhcCCCEEEECCHHHHHHHHHHhC---CCcEEECCCCCHhhcCcCCC-------------CC-CEEEEEEcCccccChHH
Confidence 689999999999999999988765 35689999999887754321 12 24669999999999999
Q ss_pred HHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh-cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC
Q 044542 305 LYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL-GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR 383 (465)
Q Consensus 305 ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l-~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~ 383 (465)
+++|++.+ + ++|+|+|+|+..+.+++. .++|+|+|+++++++.++|+.||++++||. |++|++++|||+||+
T Consensus 213 li~a~~~~----~-~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~--e~~g~~~~Eama~G~ 285 (351)
T cd03804 213 AIEAFNKL----G-KRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAE--EDFGIVPVEAMASGT 285 (351)
T ss_pred HHHHHHHC----C-CcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCc--CCCCchHHHHHHcCC
Confidence 99999987 3 789999999887777653 389999999999999999999999999994 999999999999999
Q ss_pred eEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 044542 384 TVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAY 453 (465)
Q Consensus 384 PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 453 (465)
|||+++.|+.. +++.++.+|+++++ |+++++++|.+++++ ++ .+.++.++.+++ |+|+++.+++
T Consensus 286 Pvi~~~~~~~~-e~i~~~~~G~~~~~~~~~~la~~i~~l~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~ 350 (351)
T cd03804 286 PVIAYGKGGAL-ETVIDGVTGILFEEQTVESLAAAVERFEKN-ED---FDPQAIRAHAER-FSESRFREKI 350 (351)
T ss_pred CEEEeCCCCCc-ceeeCCCCEEEeCCCCHHHHHHHHHHHHhC-cc---cCHHHHHHHHHh-cCHHHHHHHh
Confidence 99999999998 89999999999998 999999999999998 53 233445555554 8999988765
No 60
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=2.8e-33 Score=263.08 Aligned_cols=290 Identities=14% Similarity=0.196 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCccccCCCCCCcEEEecC--CchhHHhh---hc
Q 044542 99 ERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSVNLNNDGAFDYVHTES--VSLPHWRA---KM 173 (465)
Q Consensus 99 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~DiI~~~~--~~~~~~~~---~~ 173 (465)
.++-.-+.+.|...|++|+++-...-.... ... +++..+.|+ ..+..|.. .+
T Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 69 (331)
T PHA01630 13 VRQKKLLEEHLKMLGHKVTVFEKPTLTKYQ----------------------LPP-GYPIYIYYTIFNSMLFWKGIPHVG 69 (331)
T ss_pred HHHHHHHHHHHHHhCCeeEEEeccchhhhh----------------------cCC-CCceeeehhhhhHHHHHhhccccC
Confidence 455666788999999999998665422111 001 234344454 23333322 23
Q ss_pred CCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHh-hcccCEEEEeChhHHHHHHHHhCCC-C
Q 044542 174 VPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRF-FSSYNQHICISNSAAEVLVKIYQLP-Q 251 (465)
Q Consensus 174 ~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~~S~~~~~~~~~~~~~~-~ 251 (465)
.| ++.++|+.. .+...+.. .+ .+++|.++++|+.+++.+.+ .+++ +
T Consensus 70 ~~-~v~e~~~~~-------------------------~l~~~~~~-----~~~~~~ad~ii~~S~~~~~~l~~-~g~~~~ 117 (331)
T PHA01630 70 KN-IVFEVADTD-------------------------AISHTALY-----FFRNQPVDEIVVPSQWSKNAFYT-SGLKIP 117 (331)
T ss_pred Cc-eEEEEEeec-------------------------hhhHHHHH-----HHhhccCCEEEECCHHHHHHHHH-cCCCCC
Confidence 35 888888721 11111111 33 47899999999999999987 4554 5
Q ss_pred CCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchh
Q 044542 252 RNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGR 331 (465)
Q Consensus 252 ~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~ 331 (465)
+++.+||||+|.+.|.+.... .+.+++++++|++.++||++.+++|++.+.+++++++++++|++....
T Consensus 118 ~~i~vIpNGVd~~~f~~~~~~-----------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~ 186 (331)
T PHA01630 118 QPIYVIPHNLNPRMFEYKPKE-----------KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDP 186 (331)
T ss_pred CCEEEECCCCCHHHcCCCccc-----------cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccch
Confidence 789999999998877654221 123477778889999999999999999999888899999999765443
Q ss_pred HHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEe----
Q 044542 332 RYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTF---- 407 (465)
Q Consensus 332 ~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~---- 407 (465)
.+..+. .+.|.++.+++..+|+.||++++||.+ |+||++++||||||+|||+|+.||.. |++.++.+|+++
T Consensus 187 ~l~~~~---~~~~~v~~~~l~~~y~~aDv~v~pS~~-E~fgl~~lEAMA~G~PVIas~~gg~~-E~i~~~~ng~lv~~~~ 261 (331)
T PHA01630 187 RLFGLN---GVKTPLPDDDIYSLFAGCDILFYPVRG-GAFEIPVIEALALGLDVVVTEKGAWS-EWVLSNLDVYWIKSGR 261 (331)
T ss_pred hhcccc---ceeccCCHHHHHHHHHhCCEEEECCcc-ccCChHHHHHHHcCCCEEEeCCCCch-hhccCCCceEEeeecc
Confidence 332221 135668899999999999999999986 99999999999999999999999988 888888776665
Q ss_pred ----------------CCCHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 044542 408 ----------------SPNVKSFVEALELVIRDG-PKVLQRKGLACKEHALSMFTATKMASAYERFFLR 459 (465)
Q Consensus 408 ----------------~~d~~~la~~i~~ll~~~-~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 459 (465)
++|.+++++++.+++.++ ++.++++..++.+.+.++|||++++++++++|++
T Consensus 262 ~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 262 KPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred cccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 457889999999999873 2445555555556567779999999999999975
No 61
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=4.6e-33 Score=274.90 Aligned_cols=215 Identities=14% Similarity=0.226 Sum_probs=182.1
Q ss_pred hhcccCEEEEeChhHHHHHHHHhC---CCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccC
Q 044542 225 FFSSYNQHICISNSAAEVLVKIYQ---LPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKG 301 (465)
Q Consensus 225 ~~~~~d~ii~~S~~~~~~~~~~~~---~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg 301 (465)
..+.+|.+|++|+..++.+.+.++ .+..++.++|||++...+.+.. ...+.+++++||+.+.||
T Consensus 267 ~~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~-------------~r~~~~il~vGrl~~~Kg 333 (500)
T TIGR02918 267 NADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPEQ-------------ERKPFSIITASRLAKEKH 333 (500)
T ss_pred chhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCccc-------------ccCCeEEEEEeccccccC
Confidence 357789999999999998887653 3467899999998754432211 122367889999999999
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh------cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHH
Q 044542 302 HPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL------GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTL 375 (465)
Q Consensus 302 ~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l------~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~ 375 (465)
++.+++|+..+.++.|+++|.|+|+|+..+.++++ .++|.|+|+. ++.++|+.||++|+||.. ||||+++
T Consensus 334 ~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~-Egfgl~~ 409 (500)
T TIGR02918 334 IDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTS-EGFGLTL 409 (500)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCcc-ccccHHH
Confidence 99999999999988899999999999877666553 2789999975 688999999999999975 9999999
Q ss_pred HHHHHcCCeEEecCCC-CcceeeeeeCCceEEeCC-----C----HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCC
Q 044542 376 IEAMHCGRTVLTPNYP-SIVRTVVVNEELGYTFSP-----N----VKSFVEALELVIRDGPKVLQRKGLACKEHALSMFT 445 (465)
Q Consensus 376 ~EAma~G~PvI~s~~g-g~~~e~v~~~~~G~l~~~-----d----~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs 445 (465)
+||||||+|||+++++ |.+ +++.++.+|+++++ | +++|+++|.++++ ++.+++|++++++.+++ ||
T Consensus 410 lEAma~G~PVI~~dv~~G~~-eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~--~~~~~~~~~~a~~~a~~-fs 485 (500)
T TIGR02918 410 MEAVGSGLGMIGFDVNYGNP-TFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN--SNDIDAFHEYSYQIAEG-FL 485 (500)
T ss_pred HHHHHhCCCEEEecCCCCCH-HHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHh-cC
Confidence 9999999999999987 676 89999999999983 2 8899999999994 45789999999998765 99
Q ss_pred HHHHHHHHHHHHHHh
Q 044542 446 ATKMASAYERFFLRM 460 (465)
Q Consensus 446 ~~~~~~~~~~~~~~~ 460 (465)
|+.++++|.++++++
T Consensus 486 ~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 486 TANIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999764
No 62
>PHA01633 putative glycosyl transferase group 1
Probab=100.00 E-value=2.5e-32 Score=253.08 Aligned_cols=306 Identities=15% Similarity=0.227 Sum_probs=220.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCccccCCCCCCcEE
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSVNLNNDGAFDYV 159 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~DiI 159 (465)
||-++++..| +.+..+...++..|++.|--|++++....-... ...+.+.+..+..
T Consensus 1 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------ 56 (335)
T PHA01633 1 MKTAILTMNY------SSISNVSEDIAEVLRENGEIVTITKNPFYIPKA------EKLIVFIPFHPPS------------ 56 (335)
T ss_pred CceEEEEech------hhhhhHHHHHHHHHHhCCcEEEEecCCcccCcc------ceEEEEeecCCcc------------
Confidence 6778888765 567778899999999999888887765432211 1112222211110
Q ss_pred EecCCc-hhHHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChh
Q 044542 160 HTESVS-LPHWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNS 238 (465)
Q Consensus 160 ~~~~~~-~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~ 238 (465)
.+.+- ...++....+ ++.++|+.+.. + ... +.+.+.+.+|++|+.
T Consensus 57 -~~~~~~~~~~~~~~~~-~~tt~~g~~~~----~------------------~y~----------~~m~~~~~vIavS~~ 102 (335)
T PHA01633 57 -LNPYLYAYYQFKGKKY-FYTTCDGIPNI----E------------------IVN----------KYLLQDVKFIPNSKF 102 (335)
T ss_pred -cchHHhhhhhhcCCCc-eEEeeCCcCch----H------------------HHH----------HHHhcCCEEEeCCHH
Confidence 01111 1222333445 89999987521 0 000 333455789999999
Q ss_pred HHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCC
Q 044542 239 AAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPG 318 (465)
Q Consensus 239 ~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~ 318 (465)
.++.+++ .|++.. + +|+||+|.+.|.+........+++++....+.++++++||+.++||++.+++|++++.+++|+
T Consensus 103 t~~~L~~-~G~~~~-i-~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~ 179 (335)
T PHA01633 103 SAENLQE-VGLQVD-L-PVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPD 179 (335)
T ss_pred HHHHHHH-hCCCCc-e-eeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCC
Confidence 9999997 577644 3 578999999887754333456666665433447888999999999999999999999887664
Q ss_pred ----eEEEEEeCCcchhHHHHh--cCCeEEc---CCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecC
Q 044542 319 ----VYLLVAGTGPWGRRYAEL--GQNVKVL---GALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPN 389 (465)
Q Consensus 319 ----~~l~ivG~g~~~~~~~~l--~~~V~~~---g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~ 389 (465)
++++++|.+ .++++ .++|+|+ |+++.+++.++|++||++|+||.+ ||||++++|||+||+|||+++
T Consensus 180 ~~~~i~l~ivG~~----~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~-EgfGlvlLEAMA~G~PVVas~ 254 (335)
T PHA01633 180 IAKKIHFFVISHK----QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGT-EGFGMPVLESMAMGTPVIHQL 254 (335)
T ss_pred ccccEEEEEEcHH----HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCcc-ccCCHHHHHHHHcCCCEEEcc
Confidence 578888742 33443 3789998 566789999999999999999985 999999999999999999999
Q ss_pred CCCcceeeee------------------eCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHH
Q 044542 390 YPSIVRTVVV------------------NEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMA 450 (465)
Q Consensus 390 ~gg~~~e~v~------------------~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 450 (465)
.++++ |++. +...|+.++. |+++++++|.++++... .+..+.++++.+++ |+|++++
T Consensus 255 ~~~l~-Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~--~~~~~~~~~~~a~~-f~~~~~~ 330 (335)
T PHA01633 255 MPPLD-EFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQD--REERSMKLKELAKK-YDIRNLY 330 (335)
T ss_pred CCCce-eecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhccC--hhhhhHHHHHHHHh-cCHHHHH
Confidence 99987 6532 1235778888 99999999999976522 33446778887766 9999999
Q ss_pred HHHHH
Q 044542 451 SAYER 455 (465)
Q Consensus 451 ~~~~~ 455 (465)
++|++
T Consensus 331 ~~~~~ 335 (335)
T PHA01633 331 TRFLE 335 (335)
T ss_pred HHhhC
Confidence 99863
No 63
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.7e-32 Score=264.80 Aligned_cols=298 Identities=16% Similarity=0.212 Sum_probs=209.7
Q ss_pred ChHHHHHHHHHHHHHhCCc-EEEEEeCCCCCCCCCcccCCcceEEEeecCC------Cccc-------------------
Q 044542 96 GGMERHASTLYHALAARGH-EIHVFTAPSDRKPHNDVHQGNLHVHFAANDH------GSVN------------------- 149 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~------------------- 149 (465)
+|.+..+..++..|.++|+ +|++++..............+..++..+... ..+.
T Consensus 15 ~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (371)
T PLN02275 15 FGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAIQFLMLLWFL 94 (371)
T ss_pred CCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCCcccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888899998875 8999998665433333333344455443211 1111
Q ss_pred cCCCCCCcEEEecCCch-----hHHh-h--hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHH
Q 044542 150 LNNDGAFDYVHTESVSL-----PHWR-A--KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVD 221 (465)
Q Consensus 150 ~~~~~~~DiI~~~~~~~-----~~~~-~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (465)
..+..+||+||++++.. ..++ + .+.| +++++|+.+........ ........+..++
T Consensus 95 ~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~----------~~~~~~~~~~~~~----- 158 (371)
T PLN02275 95 CVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAK-FVIDWHNFGYTLLALSL----------GRSHPLVRLYRWY----- 158 (371)
T ss_pred HhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCC-EEEEcCCccHHHHhccc----------CCCCHHHHHHHHH-----
Confidence 02457999999987431 1111 2 2456 99999987422111000 0000111222222
Q ss_pred HHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccC
Q 044542 222 EIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKG 301 (465)
Q Consensus 222 ~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg 301 (465)
++..++++|.++++|+.+++.+.+.+|++ +.+||||. .+.|.+.... .. ...+.+.+++++||+.++||
T Consensus 159 e~~~~~~ad~ii~~S~~~~~~l~~~~g~~---i~vi~n~~-~~~f~~~~~~-~~------~~~~~~~~i~~~grl~~~k~ 227 (371)
T PLN02275 159 ERHYGKMADGHLCVTKAMQHELDQNWGIR---ATVLYDQP-PEFFRPASLE-IR------LRPNRPALVVSSTSWTPDED 227 (371)
T ss_pred HHHHHhhCCEEEECCHHHHHHHHHhcCCC---eEEECCCC-HHHcCcCCch-hc------ccCCCcEEEEEeCceeccCC
Confidence 33668899999999999999998866764 89999985 4555543221 11 11233356778999999999
Q ss_pred HHHHHHHHHHhh-----------------hcCCCeEEEEEeCCcchhHHHHh----c-CCeEEcC-CCChhHHHHHHHhc
Q 044542 302 HPLLYEAFSSIT-----------------RDHPGVYLLVAGTGPWGRRYAEL----G-QNVKVLG-ALEAHQLSEFYNAL 358 (465)
Q Consensus 302 ~~~ll~a~~~l~-----------------~~~~~~~l~ivG~g~~~~~~~~l----~-~~V~~~g-~v~~~~~~~~~~~a 358 (465)
++.+++|+..+. +++|+++|+|+|+|+.++.++++ + ++|.|.+ +++.+++..+|+.|
T Consensus 228 ~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~a 307 (371)
T PLN02275 228 FGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSA 307 (371)
T ss_pred HHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhC
Confidence 999999998874 23578999999999987766553 3 5688765 68999999999999
Q ss_pred CeEEecc--cCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHH
Q 044542 359 DVFVNPT--LRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVI 422 (465)
Q Consensus 359 Dv~v~ps--~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll 422 (465)
|+++.|+ ..+|++|++++||||||+|||+++.|+.+ |++.++.+|++++ |+++|+++|.+++
T Consensus 308 Dv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~-eiv~~g~~G~lv~-~~~~la~~i~~l~ 371 (371)
T PLN02275 308 DLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIG-ELVKDGKNGLLFS-SSSELADQLLELL 371 (371)
T ss_pred CEEEEeccccccccccHHHHHHHHCCCCEEEecCCChH-HHccCCCCeEEEC-CHHHHHHHHHHhC
Confidence 9999863 33589999999999999999999999998 8999999999998 8999999998763
No 64
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=4.3e-31 Score=257.10 Aligned_cols=336 Identities=15% Similarity=0.153 Sum_probs=225.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC-CcEEEEEeCCCCCCCCCcc--------------------------c
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAAR-GHEIHVFTAPSDRKPHNDV--------------------------H 132 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~--------------------------~ 132 (465)
-+|+|+++.-. |...|....-.--|-+|++. |++|+++.+=-...+...+ .
T Consensus 323 r~~~ivTtAsl--PWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~ 400 (794)
T PLN02501 323 RHVAIVTTASL--PWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGF 400 (794)
T ss_pred CeEEEEEcccC--cccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 47999987432 35566655555556677777 7999998763221111000 1
Q ss_pred CCcceEEEeecCCCccccC-----------CCCCCcEEEecCCchhHHh-------hhcCCcEEEEecchhHHHHhhhhh
Q 044542 133 QGNLHVHFAANDHGSVNLN-----------NDGAFDYVHTESVSLPHWR-------AKMVPNVAVTWHGIWYEVMHSKLF 194 (465)
Q Consensus 133 ~~~~~v~~~~~~~~~~~~~-----------~~~~~DiI~~~~~~~~~~~-------~~~~p~~v~~~h~~~~~~~~~~~~ 194 (465)
.....+.+.+.+....... ...+|||||++++....|. .+..| ++.++|.....+......
T Consensus 401 ~~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~P-VVasyHTny~eYl~~y~~ 479 (794)
T PLN02501 401 KADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNH-VVGVVHTNYLEYIKREKN 479 (794)
T ss_pred CCCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCC-eEEEEeCCcHHHHhHhcc
Confidence 1223344443332111111 6789999999987544443 22236 999999765432221100
Q ss_pred hhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCc
Q 044542 195 GELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGV 274 (465)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~ 274 (465)
..+...+.+.+.+++. +++ ||.++++|+.+.+ + +...+.. .||||.+.|.+....
T Consensus 480 -----------g~L~~~llk~l~~~v~--r~h--cD~VIaPS~atq~-L------~~~vI~n-VnGVDte~F~P~~r~-- 534 (794)
T PLN02501 480 -----------GALQAFFVKHINNWVT--RAY--CHKVLRLSAATQD-L------PKSVICN-VHGVNPKFLKIGEKV-- 534 (794)
T ss_pred -----------hhHHHHHHHHHHHHHH--Hhh--CCEEEcCCHHHHH-h------cccceee-cccccccccCCcchh--
Confidence 0011122222222221 112 8999999977663 2 1222222 279999999876442
Q ss_pred ccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhc----CCeEEcCCCChhH
Q 044542 275 RFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELG----QNVKVLGALEAHQ 350 (465)
Q Consensus 275 ~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~----~~V~~~g~v~~~~ 350 (465)
..++++|++... ..++|+||+.+.||++.+++|++.+.++.++++|+|+|+|+.++.++++. -+|.|+|.. ++
T Consensus 535 ~~~r~lgi~~~~-kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~--dd 611 (794)
T PLN02501 535 AEERELGQQAFS-KGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGR--DH 611 (794)
T ss_pred HHHHhcCCcccc-CceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCC--CC
Confidence 222456665433 23569999999999999999999998877899999999999987776643 458899987 56
Q ss_pred HHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHH
Q 044542 351 LSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQ 430 (465)
Q Consensus 351 ~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~ 430 (465)
...+|+.+|++|+||.. |+||++++||||||+|||+++.+|. +++.++.+|++.. |+++++++|.+++.+ +..+.
T Consensus 612 ~~~lyasaDVFVlPS~s-EgFGlVlLEAMA~GlPVVATd~pG~--e~V~~g~nGll~~-D~EafAeAI~~LLsd-~~~rl 686 (794)
T PLN02501 612 ADDSLHGYKVFINPSIS-DVLCTATAEALAMGKFVVCADHPSN--EFFRSFPNCLTYK-TSEDFVAKVKEALAN-EPQPL 686 (794)
T ss_pred HHHHHHhCCEEEECCCc-ccchHHHHHHHHcCCCEEEecCCCC--ceEeecCCeEecC-CHHHHHHHHHHHHhC-chhhh
Confidence 67899999999999986 9999999999999999999999985 4477788888764 999999999999998 44332
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 044542 431 RKGLACKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 431 ~~~~~~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
.+.+ ...+||++.++++++.=
T Consensus 687 ~~~a------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 687 TPEQ------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred HHHH------HhhCCHHHHHHHHHHhh
Confidence 2221 22589999999998753
No 65
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.97 E-value=1.7e-30 Score=252.25 Aligned_cols=263 Identities=19% Similarity=0.218 Sum_probs=203.7
Q ss_pred CCCcEEEecCCchhHH--hh--hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhccc
Q 044542 154 GAFDYVHTESVSLPHW--RA--KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSY 229 (465)
Q Consensus 154 ~~~DiI~~~~~~~~~~--~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (465)
.++|+++++......+ +. ...+ .+..+|+....... .+... .+........ ..++++
T Consensus 98 ~~~diii~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~-----------~~~~~----~~~~~~~~~~---~~~~~~ 158 (372)
T cd04949 98 TKPDVFILDRPTLDGQALLNMKKAAK-VVVVLHSNHVSDNN-----------DPVHS----LINNFYEYVF---ENLDKV 158 (372)
T ss_pred CCCCEEEECCccccchhHHhccCCce-EEEEEChHHhCCcc-----------ccccc----ccchhhHHHH---hChhhC
Confidence 7899999987643332 22 1223 78899974321100 00000 1111111111 335789
Q ss_pred CEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHH
Q 044542 230 NQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAF 309 (465)
Q Consensus 230 d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~ 309 (465)
|.++++|+..++.+.+.++.. .++.++|||++...+.+... ....+..++++||+.+.||++.+++|+
T Consensus 159 d~ii~~s~~~~~~l~~~~~~~-~~v~~ip~g~~~~~~~~~~~-----------~~~~~~~i~~vgrl~~~K~~~~li~a~ 226 (372)
T cd04949 159 DGVIVATEQQKQDLQKQFGNY-NPIYTIPVGSIDPLKLPAQF-----------KQRKPHKIITVARLAPEKQLDQLIKAF 226 (372)
T ss_pred CEEEEccHHHHHHHHHHhCCC-CceEEEcccccChhhcccch-----------hhcCCCeEEEEEccCcccCHHHHHHHH
Confidence 999999999999999877643 45999999999876654310 012235677999999999999999999
Q ss_pred HHhhhcCCCeEEEEEeCCcchhHHHHh------cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC
Q 044542 310 SSITRDHPGVYLLVAGTGPWGRRYAEL------GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR 383 (465)
Q Consensus 310 ~~l~~~~~~~~l~ivG~g~~~~~~~~l------~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~ 383 (465)
..+.+++|+++|+|+|.|+....++++ .++|.+.|+. +++.++|+.||++|+||.. ||+|++++|||++|+
T Consensus 227 ~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~S~~-Eg~~~~~lEAma~G~ 303 (372)
T cd04949 227 AKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYT--RDLDEVYQKAQLSLLTSQS-EGFGLSLMEALSHGL 303 (372)
T ss_pred HHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCC--CCHHHHHhhhhEEEecccc-cccChHHHHHHhCCC
Confidence 999999999999999998776554432 2789999965 7899999999999999975 999999999999999
Q ss_pred eEEecCCC-CcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 044542 384 TVLTPNYP-SIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAY 453 (465)
Q Consensus 384 PvI~s~~g-g~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 453 (465)
|||+++.+ |.. +++.++.+|+++++ |+++++++|.+++++ ++.++++++++++.+ ++|||++++++|
T Consensus 304 PvI~~~~~~g~~-~~v~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~-~~~s~~~~~~~w 372 (372)
T cd04949 304 PVISYDVNYGPS-EIIEDGENGYLVPKGDIEALAEAIIELLND-PKLLQKFSEAAYENA-ERYSEENVWEKW 372 (372)
T ss_pred CEEEecCCCCcH-HHcccCCCceEeCCCcHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH-HHhhHHHHHhcC
Confidence 99999987 565 89999999999999 999999999999999 899999999999995 559999998875
No 66
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=5.4e-28 Score=232.73 Aligned_cols=373 Identities=19% Similarity=0.232 Sum_probs=253.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC--cc------------------------cC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN--DV------------------------HQ 133 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~~------------------------~~ 133 (465)
|||++++.+.-+-...||...++..+.++|++.|++|.|+.+........ +. ..
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 79999998763336899999999999999999999999999876522211 00 00
Q ss_pred CcceEEEeecCC--C-----ccccC------------------C-C--CCCcEEEecCCc---hhHHhhh------cCCc
Q 044542 134 GNLHVHFAANDH--G-----SVNLN------------------N-D--GAFDYVHTESVS---LPHWRAK------MVPN 176 (465)
Q Consensus 134 ~~~~v~~~~~~~--~-----~~~~~------------------~-~--~~~DiI~~~~~~---~~~~~~~------~~p~ 176 (465)
.+....+..... . .+.+. . . ..|||||+|++. .+.+++. .+|
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~- 159 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIP- 159 (487)
T ss_pred CCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCC-
Confidence 001111111000 0 00111 1 1 479999999873 2333333 346
Q ss_pred EEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHH-HHhC-------
Q 044542 177 VAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLV-KIYQ------- 248 (465)
Q Consensus 177 ~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~-~~~~------- 248 (465)
.|+|+|+..+.-...........-+. .... ...+. .....--.+.-+..+|.+.++|...++.+. ..+|
T Consensus 160 tVfTIHNl~~qG~~~~~~~~~lgLp~-~~~~-~~~l~-~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l 236 (487)
T COG0297 160 TVFTIHNLAYQGLFRLQYLEELGLPF-EAYA-SFGLE-FYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLL 236 (487)
T ss_pred eEEEEeeceeecccchhhHHHhcCCH-HHhh-hceee-ecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhh
Confidence 99999986544322211111110000 0000 00000 001111122456789999999999888776 2121
Q ss_pred -CCCCCEEEecCCCCCCCccCCccc-----------------CcccccccCCCCC-CcEEEEEeeccccccCHHHHHHHH
Q 044542 249 -LPQRNVHVILNGVDETKFVHDPEA-----------------GVRFPEKLGVPAN-VSLVMGVAGRLVRDKGHPLLYEAF 309 (465)
Q Consensus 249 -~~~~ki~vi~ngvd~~~~~~~~~~-----------------~~~~r~~~g~~~~-~~~~l~~~Grl~~~Kg~~~ll~a~ 309 (465)
.-..++.-|.||+|.+.+.|.... +..+++++|++.+ +...++++||+..+||++.+++++
T Consensus 237 ~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i 316 (487)
T COG0297 237 SWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAI 316 (487)
T ss_pred hhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHH
Confidence 123688999999999988775432 2346677898854 337888999999999999999999
Q ss_pred HHhhhcCCCeEEEEEeCCc--chhHHHHhc----CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC
Q 044542 310 SSITRDHPGVYLLVAGTGP--WGRRYAELG----QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR 383 (465)
Q Consensus 310 ~~l~~~~~~~~l~ivG~g~--~~~~~~~l~----~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~ 383 (465)
..+.++. +++++.|.|+ +++.+..+. .++.+.-..+..-....|+.+|++++||.+ |+||++-++||..|+
T Consensus 317 ~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrf-EPcGL~ql~amryGt 393 (487)
T COG0297 317 DELLEQG--WQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRF-EPCGLTQLYAMRYGT 393 (487)
T ss_pred HHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcC-cCCcHHHHHHHHcCC
Confidence 9998864 8999999983 233444433 556666666667788899999999999976 999999999999999
Q ss_pred eEEecCCCCcceeeeee--------CCceEEeCC-CHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHhhCCHHHHHH
Q 044542 384 TVLTPNYPSIVRTVVVN--------EELGYTFSP-NVKSFVEALELVIR---DGPKVLQRKGLACKEHALSMFTATKMAS 451 (465)
Q Consensus 384 PvI~s~~gg~~~e~v~~--------~~~G~l~~~-d~~~la~~i~~ll~---~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 451 (465)
++|+..+||.+ +.|.+ ..+|+++.+ ++++++.+|.+.+. +++..++.+..++.. .+|+|+..++
T Consensus 394 vpIv~~tGGLa-dTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~---~d~sw~~sa~ 469 (487)
T COG0297 394 LPIVRETGGLA-DTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMG---ADFSWDLSAK 469 (487)
T ss_pred cceEcccCCcc-ceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc---cccCchhHHH
Confidence 99999999999 55553 579999999 99999999998765 322225555544433 6799999999
Q ss_pred HHHHHHHHhcCC
Q 044542 452 AYERFFLRMKNP 463 (465)
Q Consensus 452 ~~~~~~~~~~~~ 463 (465)
+|.++|+.+.+.
T Consensus 470 ~y~~lY~~~~~~ 481 (487)
T COG0297 470 EYVELYKPLLSK 481 (487)
T ss_pred HHHHHHHHHhcc
Confidence 999999998764
No 67
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.96 E-value=5.3e-28 Score=233.15 Aligned_cols=316 Identities=17% Similarity=0.130 Sum_probs=222.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC----Cc--------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH----GS-------- 147 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~-------- 147 (465)
|||++++.. .||.++++.+++++|.+.||+|++++...... .......+..++...... ..
T Consensus 2 ~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 74 (357)
T PRK00726 2 KKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGME-ARLVPKAGIEFHFIPSGGLRRKGSLANLKAPF 74 (357)
T ss_pred cEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchh-hhccccCCCcEEEEeccCcCCCChHHHHHHHH
Confidence 899998763 48999999999999999999999999865321 111122233333332211 10
Q ss_pred ---------cccCCCCCCcEEEecCC--chhHHh---hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhh
Q 044542 148 ---------VNLNNDGAFDYVHTESV--SLPHWR---AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQ 213 (465)
Q Consensus 148 ---------~~~~~~~~~DiI~~~~~--~~~~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (465)
....++.+||+||+|+. .+...+ ..++| ++.+.|+...
T Consensus 75 ~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p-~v~~~~~~~~--------------------------- 126 (357)
T PRK00726 75 KLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIP-LVIHEQNAVP--------------------------- 126 (357)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCC-EEEEcCCCCc---------------------------
Confidence 00116779999999974 222222 23456 7665554210
Q ss_pred hhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEe
Q 044542 214 EAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVA 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~ 293 (465)
.... +..++.+|.+++.++... .+ .+..++++++||+|.+.+.+.. .+++++++++. .+++++
T Consensus 127 ~~~~-----r~~~~~~d~ii~~~~~~~---~~---~~~~~i~vi~n~v~~~~~~~~~-----~~~~~~~~~~~-~~i~~~ 189 (357)
T PRK00726 127 GLAN-----KLLARFAKKVATAFPGAF---PE---FFKPKAVVTGNPVREEILALAA-----PPARLAGREGK-PTLLVV 189 (357)
T ss_pred cHHH-----HHHHHHhchheECchhhh---hc---cCCCCEEEECCCCChHhhcccc-----hhhhccCCCCC-eEEEEE
Confidence 0111 134567899998887442 11 5679999999999987654321 22345555554 566688
Q ss_pred eccccccCHHHHH-HHHHHhhhcCCCeEEEEEeCCcchhHHHH--hcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCC
Q 044542 294 GRLVRDKGHPLLY-EAFSSITRDHPGVYLLVAGTGPWGRRYAE--LGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQG 370 (465)
Q Consensus 294 Grl~~~Kg~~~ll-~a~~~l~~~~~~~~l~ivG~g~~~~~~~~--l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg 370 (465)
|+....|++..++ +|++++.+. + ..++++|+|+.++..+. ++-+|.+.|++ +++.++|+.||+++.++ |
T Consensus 190 gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~i~~~----g 261 (357)
T PRK00726 190 GGSQGARVLNEAVPEALALLPEA-L-QVIHQTGKGDLEEVRAAYAAGINAEVVPFI--DDMAAAYAAADLVICRA----G 261 (357)
T ss_pred CCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcCCCcHHHHHHHhhcCCcEEEeehH--hhHHHHHHhCCEEEECC----C
Confidence 8888888765555 999888654 3 56788999876544333 23349999998 79999999999999854 2
Q ss_pred CcHHHHHHHHcCCeEEecCCCCcce-------eeeeeCCceEEeCC-C--HHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 044542 371 LDLTLIEAMHCGRTVLTPNYPSIVR-------TVVVNEELGYTFSP-N--VKSFVEALELVIRDGPKVLQRKGLACKEHA 440 (465)
Q Consensus 371 ~~~~~~EAma~G~PvI~s~~gg~~~-------e~v~~~~~G~l~~~-d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 440 (465)
+++++|||++|+|+|++..++..+ +.+.+.+.|+++++ | +++++++|.+++++ ++.+++|++++++++
T Consensus 262 -~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~ 339 (357)
T PRK00726 262 -ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD-PERLEAMAEAARALG 339 (357)
T ss_pred -HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC-HHHHHHHHHHHHhcC
Confidence 689999999999999987653221 45667789999987 6 99999999999999 899999999999987
Q ss_pred HhhCCHHHHHHHHHHHHH
Q 044542 441 LSMFTATKMASAYERFFL 458 (465)
Q Consensus 441 ~~~fs~~~~~~~~~~~~~ 458 (465)
++ ++.+.+++.+.++.+
T Consensus 340 ~~-~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 340 KP-DAAERLADLIEELAR 356 (357)
T ss_pred Cc-CHHHHHHHHHHHHhh
Confidence 55 899999999988764
No 68
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.96 E-value=8.2e-27 Score=229.88 Aligned_cols=340 Identities=15% Similarity=0.150 Sum_probs=217.6
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEE--EeCCCCCCCCC-cccCCcceEEEeecCCC-c-cccCCCCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHV--FTAPSDRKPHN-DVHQGNLHVHFAANDHG-S-VNLNNDGA 155 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v--~~~~~~~~~~~-~~~~~~~~v~~~~~~~~-~-~~~~~~~~ 155 (465)
+.++++. ...|-...+..|++.|.+.++++.+ .+....+.... ........+.+.+.... . .++.+..+
T Consensus 51 ~~iW~Ha------~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~ 124 (425)
T PRK05749 51 PLIWFHA------VSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWR 124 (425)
T ss_pred CeEEEEe------CCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhC
Confidence 4556654 2356778899999999988755433 33222221111 11111222333332211 1 12237889
Q ss_pred CcEEEecCCc-hhHH----hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccC
Q 044542 156 FDYVHTESVS-LPHW----RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYN 230 (465)
Q Consensus 156 ~DiI~~~~~~-~~~~----~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 230 (465)
||++|++... .+.. ...++| ++...|.+..... ..+.++... .+..++.+|
T Consensus 125 Pd~v~~~~~~~~~~~l~~~~~~~ip-~vl~~~~~~~~s~---------------------~~~~~~~~~--~r~~~~~~d 180 (425)
T PRK05749 125 PKLVIIMETELWPNLIAELKRRGIP-LVLANARLSERSF---------------------KRYQKFKRF--YRLLFKNID 180 (425)
T ss_pred CCEEEEEecchhHHHHHHHHHCCCC-EEEEeccCChhhH---------------------HHHHHHHHH--HHHHHHhCC
Confidence 9999987432 1111 223567 6665443321110 000111111 125678899
Q ss_pred EEEEeChhHHHHHHHHhCCCCCCEEEecCC-CCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHH
Q 044542 231 QHICISNSAAEVLVKIYQLPQRNVHVILNG-VDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAF 309 (465)
Q Consensus 231 ~ii~~S~~~~~~~~~~~~~~~~ki~vi~ng-vd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~ 309 (465)
.++++|+..++.+.+ +|++++ +.+++|+ .|.............++++++ + ++ .+++++|+ ..|+.+.+++|+
T Consensus 181 ~ii~~S~~~~~~l~~-~g~~~~-i~vi~n~~~d~~~~~~~~~~~~~~r~~~~-~-~~-~vil~~~~--~~~~~~~ll~A~ 253 (425)
T PRK05749 181 LVLAQSEEDAERFLA-LGAKNE-VTVTGNLKFDIEVPPELAARAATLRRQLA-P-NR-PVWIAAST--HEGEEELVLDAH 253 (425)
T ss_pred EEEECCHHHHHHHHH-cCCCCC-cEecccccccCCCChhhHHHHHHHHHHhc-C-CC-cEEEEeCC--CchHHHHHHHHH
Confidence 999999999999988 688777 8899885 332211111112234566665 3 33 45557775 367899999999
Q ss_pred HHhhhcCCCeEEEEEeCCcch-hHHHHh----c-CCeEEcCCC------------ChhHHHHHHHhcCeEEe-cccCCCC
Q 044542 310 SSITRDHPGVYLLVAGTGPWG-RRYAEL----G-QNVKVLGAL------------EAHQLSEFYNALDVFVN-PTLRPQG 370 (465)
Q Consensus 310 ~~l~~~~~~~~l~ivG~g~~~-~~~~~l----~-~~V~~~g~v------------~~~~~~~~~~~aDv~v~-ps~~~eg 370 (465)
+++.+++|+++|+|+|+|+.+ +.++++ + ..+.+.|.. +.+++..+|+.||++++ +|.. |+
T Consensus 254 ~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~-e~ 332 (425)
T PRK05749 254 RALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLV-KR 332 (425)
T ss_pred HHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcC-CC
Confidence 999887899999999998865 444443 2 233333311 13689999999999666 5654 88
Q ss_pred CcHHHHHHHHcCCeEEecCC-CCcceeeeee-CCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHH
Q 044542 371 LDLTLIEAMHCGRTVLTPNY-PSIVRTVVVN-EELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTAT 447 (465)
Q Consensus 371 ~~~~~~EAma~G~PvI~s~~-gg~~~e~v~~-~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~ 447 (465)
+|.+++|||+||+|||+++. ++.. ++... .++|.++++ |+++|+++|.+++++ ++.+++|++++++++.++ .
T Consensus 333 ~g~~~lEAma~G~PVI~g~~~~~~~-e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~-~~~~~~m~~~a~~~~~~~---~ 407 (425)
T PRK05749 333 GGHNPLEPAAFGVPVISGPHTFNFK-EIFERLLQAGAAIQVEDAEDLAKAVTYLLTD-PDARQAYGEAGVAFLKQN---Q 407 (425)
T ss_pred CCCCHHHHHHhCCCEEECCCccCHH-HHHHHHHHCCCeEEECCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhC---c
Confidence 99999999999999999865 3343 44433 245777777 999999999999998 899999999999999875 3
Q ss_pred HHHHHHHHHHHHhcCC
Q 044542 448 KMASAYERFFLRMKNP 463 (465)
Q Consensus 448 ~~~~~~~~~~~~~~~~ 463 (465)
...+++.+++.+.+++
T Consensus 408 ~~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 408 GALQRTLQLLEPYLPP 423 (425)
T ss_pred cHHHHHHHHHHHhccc
Confidence 6667777777766553
No 69
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.95 E-value=2.7e-26 Score=221.60 Aligned_cols=299 Identities=14% Similarity=0.077 Sum_probs=195.5
Q ss_pred CCCCcEEEecCCchh---HHhh---hcCCcEEEEecchhHHH-Hhh---hhhhhhhhcCCCCCCCchhhhhhhhHHHHHH
Q 044542 153 DGAFDYVHTESVSLP---HWRA---KMVPNVAVTWHGIWYEV-MHS---KLFGELFSNQNGVLPGSMTELQEAMPRLVDE 222 (465)
Q Consensus 153 ~~~~DiI~~~~~~~~---~~~~---~~~p~~v~~~h~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (465)
..++||+|+|.|... ..++ ..+| .|.|.|....-- +.. +++..+..... .-...-...-.+...|
T Consensus 146 ~~~~dViH~HeWm~g~a~~~lK~~~~~Vp-tVfTtHAT~~GR~l~~g~~~~y~~l~~~~~----d~eA~~~~I~~r~~iE 220 (590)
T cd03793 146 DEPAVVAHFHEWQAGVGLPLLRKRKVDVS-TIFTTHATLLGRYLCAGNVDFYNNLDYFDV----DKEAGKRGIYHRYCIE 220 (590)
T ss_pred CCCCeEEEEcchhHhHHHHHHHHhCCCCC-EEEEecccccccccccCCcccchhhhhcch----hhhhhcccchHHHHHH
Confidence 457999999987321 1222 2456 999999643210 000 01111000000 0000001112223335
Q ss_pred HHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCccc---------------CcccccccCCCCCCc
Q 044542 223 IRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEA---------------GVRFPEKLGVPANVS 287 (465)
Q Consensus 223 ~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~---------------~~~~r~~~g~~~~~~ 287 (465)
+.....||.++++|+.++..+...|+.++++ |+|||+|.+.|.+..+. +..++.+++++.+++
T Consensus 221 ~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~t 298 (590)
T cd03793 221 RAAAHCAHVFTTVSEITAYEAEHLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDKT 298 (590)
T ss_pred HHHHhhCCEEEECChHHHHHHHHHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCCe
Confidence 5778899999999999999999999998877 99999999998765421 223567788877775
Q ss_pred EEEEEeecccc-ccCHHHHHHHHHHhhhc----CCC---eEEEEEeCCc-----------c-----hh------------
Q 044542 288 LVMGVAGRLVR-DKGHPLLYEAFSSITRD----HPG---VYLLVAGTGP-----------W-----GR------------ 331 (465)
Q Consensus 288 ~~l~~~Grl~~-~Kg~~~ll~a~~~l~~~----~~~---~~l~ivG~g~-----------~-----~~------------ 331 (465)
+++..+||+.. +||+|.+|+|++++... +.+ +-|+++-... . ++
T Consensus 299 li~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~ 378 (590)
T cd03793 299 LYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKR 378 (590)
T ss_pred EEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhh
Confidence 66644899988 99999999999998652 222 2344432210 0 00
Q ss_pred -------------------------------------------------------HHHHhc------CC--eEEcCC-CC
Q 044542 332 -------------------------------------------------------RYAELG------QN--VKVLGA-LE 347 (465)
Q Consensus 332 -------------------------------------------------------~~~~l~------~~--V~~~g~-v~ 347 (465)
.+++++ ++ |+|++. ++
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~ 458 (590)
T cd03793 379 LFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLS 458 (590)
T ss_pred hhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccC
Confidence 001111 22 344432 11
Q ss_pred ------hhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcc---eeeeeeC-CceEEeC-------C-
Q 044542 348 ------AHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIV---RTVVVNE-ELGYTFS-------P- 409 (465)
Q Consensus 348 ------~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~---~e~v~~~-~~G~l~~-------~- 409 (465)
..+..++|+.||++|+||.+ ||||++++|||+||+|||+|+.+|.. .|++.++ ..|+.+. +
T Consensus 459 ~~~~~~g~~y~E~~~g~dl~v~PS~y-E~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e 537 (590)
T cd03793 459 STNPLLGLDYEEFVRGCHLGVFPSYY-EPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDE 537 (590)
T ss_pred CCCCcCCcchHHHhhhceEEEecccc-CCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHH
Confidence 14578899999999999987 99999999999999999999999883 1455444 3566665 3
Q ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHH--HHHHhhCCHHHHHHHHHHHHHHhcC
Q 044542 410 NVKSFVEALELVIRDGPKVLQRKGLACK--EHALSMFTATKMASAYERFFLRMKN 462 (465)
Q Consensus 410 d~~~la~~i~~ll~~~~~~~~~~~~~~~--~~~~~~fs~~~~~~~~~~~~~~~~~ 462 (465)
++++++++|.++++. +.++.+.++++ +.. +.|+|+++++.|.+.|.-.+.
T Consensus 538 ~v~~La~~m~~~~~~--~~r~~~~~r~~~~r~s-~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 538 SVQQLTQYMYEFCQL--SRRQRIIQRNRTERLS-DLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhh
Confidence 688999999999865 35555555544 444 559999999999999987653
No 70
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.95 E-value=1.1e-25 Score=217.61 Aligned_cols=320 Identities=18% Similarity=0.119 Sum_probs=205.3
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEeCCCC-CCCCCcccCCcceEEEe-ecCCCcc---------------c-cC------
Q 044542 96 GGMERHASTLYHALAARGHEIHVFTAPSD-RKPHNDVHQGNLHVHFA-ANDHGSV---------------N-LN------ 151 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~v~~~-~~~~~~~---------------~-~~------ 151 (465)
++.-..-.+++..|+++||.|.++.+... ...... ......+... ....... . ..
T Consensus 16 ~~~~~~~qhl~~~~a~~~~~vl~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T cd04950 16 DFLWQRPQHLAARLAERGNRVLYVEPPGLSRTPQPR-GRDWVRVVLRLRAALRRPRRLDPLIPARRRRLLRLLLNALLFW 94 (373)
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEeCCCccCCCCCC-CcccEEeeecccccccCccccCccccchhhhHHHHHHHHHHHH
Confidence 55556677889999988999999988654 111111 1111111110 0000000 0 00
Q ss_pred ----CCCCCcEEEecCCchhHHhhh--cCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHh
Q 044542 152 ----NDGAFDYVHTESVSLPHWRAK--MVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRF 225 (465)
Q Consensus 152 ----~~~~~DiI~~~~~~~~~~~~~--~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (465)
.+.+..|++.+.+....+... ..+ +++.++|.+.... ....... ..+...
T Consensus 95 ~~~~~~~~~~i~~~~~P~~~~~~~~~~~~~-~Vyd~~D~~~~~~-----------------~~~~~~~------~~e~~~ 150 (373)
T cd04950 95 AQLELGFGRPILWYYTPYTLPVAALLQASL-VVYDCVDDLSAFP-----------------GGPPELL------EAERRL 150 (373)
T ss_pred HHHhcCCCCcEEEEeCccHHHHHhhcCCCe-EEEEcccchhccC-----------------CCCHHHH------HHHHHH
Confidence 145556666666544433332 233 7777777432110 0000111 224477
Q ss_pred hcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHH
Q 044542 226 FSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLL 305 (465)
Q Consensus 226 ~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~l 305 (465)
++++|.++++|+...+.+.+ ++ .+++++|||+|.+.|.+........+.. ...+..+++|+|++.+.++++.+
T Consensus 151 ~~~ad~vi~~S~~l~~~~~~-~~---~~i~~i~ngvd~~~f~~~~~~~~~~~~~---~~~~~~~i~y~G~l~~~~d~~ll 223 (373)
T cd04950 151 LKRADLVFTTSPSLYEAKRR-LN---PNVVLVPNGVDYEHFAAARDPPPPPADL---AALPRPVIGYYGAIAEWLDLELL 223 (373)
T ss_pred HHhCCEEEECCHHHHHHHhh-CC---CCEEEcccccCHHHhhcccccCCChhHH---hcCCCCEEEEEeccccccCHHHH
Confidence 89999999999999988877 44 7899999999998886643321111111 11233688899999997777655
Q ss_pred HHHHHHhhhcCCCeEEEEEeCCcchhHHHHhc--CCeEEcCCCChhHHHHHHHhcCeEEecccC----CCCCcHHHHHHH
Q 044542 306 YEAFSSITRDHPGVYLLVAGTGPWGRRYAELG--QNVKVLGALEAHQLSEFYNALDVFVNPTLR----PQGLDLTLIEAM 379 (465)
Q Consensus 306 l~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~----~eg~~~~~~EAm 379 (465)
.++.+ ..|+++|+++|.++......++. +||+++|+++++++..+|+.+|++++|+.. .+++|++++|||
T Consensus 224 ~~la~----~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~Eyl 299 (373)
T cd04950 224 EALAK----ARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYL 299 (373)
T ss_pred HHHHH----HCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHh
Confidence 54443 34899999999873332333333 899999999999999999999999999753 246899999999
Q ss_pred HcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 044542 380 HCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLR 459 (465)
Q Consensus 380 a~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 459 (465)
|||+|||+++.+... ...+.+++.+.|+++++++|.+++.++.....+ ++++ +.+.|||++.++++.+.+.+
T Consensus 300 A~G~PVVat~~~~~~----~~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~---~~~~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 300 AAGKPVVATPLPEVR----RYEDEVVLIADDPEEFVAAIEKALLEDGPARER---RRLR-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred ccCCCEEecCcHHHH----hhcCcEEEeCCCHHHHHHHHHHHHhcCCchHHH---HHHH-HHHHCCHHHHHHHHHHHHHh
Confidence 999999999876543 333345555449999999999977653322221 2222 44559999999999976654
No 71
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=3.4e-27 Score=229.33 Aligned_cols=324 Identities=14% Similarity=0.109 Sum_probs=221.2
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC--cc-c-------CCcce-EEEee----
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN--DV-H-------QGNLH-VHFAA---- 142 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~~-~-------~~~~~-v~~~~---- 142 (465)
+.|||++++..+ .+|....+..++++|.++|++|++++......... .. . ...+. +.+..
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 77 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVE 77 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccC
Confidence 357999999864 35888999999999999999877776554322110 00 0 00000 00000
Q ss_pred ---cC-C----------CccccCCCCCCcEEEecCCchhHH--hh---hcCCcEEEEecchhHHHHhhhhhhhhhhcCCC
Q 044542 143 ---ND-H----------GSVNLNNDGAFDYVHTESVSLPHW--RA---KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNG 203 (465)
Q Consensus 143 ---~~-~----------~~~~~~~~~~~DiI~~~~~~~~~~--~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~ 203 (465)
.. . ......++.+||+||++.+..... .+ .++| ++...++....
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip-~~~~~td~~~~---------------- 140 (380)
T PRK13609 78 KIYDKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIP-TYNVLTDFCLH---------------- 140 (380)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCC-eEEEeCCCCCC----------------
Confidence 00 0 000111678999999986532211 11 2356 55544442100
Q ss_pred CCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCC
Q 044542 204 VLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVP 283 (465)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~ 283 (465)
..++++++|.++++|+..++.+.+ +|++++++.+++++++.. |.... ....+++++|++
T Consensus 141 ------------------~~~~~~~ad~i~~~s~~~~~~l~~-~gi~~~ki~v~G~p~~~~-f~~~~-~~~~~~~~~~l~ 199 (380)
T PRK13609 141 ------------------KIWVHREVDRYFVATDHVKKVLVD-IGVPPEQVVETGIPIRSS-FELKI-NPDIIYNKYQLC 199 (380)
T ss_pred ------------------cccccCCCCEEEECCHHHHHHHHH-cCCChhHEEEECcccChH-HcCcC-CHHHHHHHcCCC
Confidence 003467899999999999999988 689889999987777643 22211 123477889998
Q ss_pred CCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEe-CC-cchhHHHHh----cCCeEEcCCCChhHHHHHHHh
Q 044542 284 ANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAG-TG-PWGRRYAEL----GQNVKVLGALEAHQLSEFYNA 357 (465)
Q Consensus 284 ~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG-~g-~~~~~~~~l----~~~V~~~g~v~~~~~~~~~~~ 357 (465)
+++++++++.|++...|+++.+++++.+. ++++++++| .+ ...+.++++ .++|+++|++ +++.++|+.
T Consensus 200 ~~~~~il~~~G~~~~~k~~~~li~~l~~~----~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~--~~~~~l~~~ 273 (380)
T PRK13609 200 PNKKILLIMAGAHGVLGNVKELCQSLMSV----PDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYV--ENIDELFRV 273 (380)
T ss_pred CCCcEEEEEcCCCCCCcCHHHHHHHHhhC----CCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEech--hhHHHHHHh
Confidence 77767777889988889999988887643 678888774 33 234455443 2589999998 578999999
Q ss_pred cCeEEecccCCCCCcHHHHHHHHcCCeEEecC-CCCcce---eeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHH
Q 044542 358 LDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPN-YPSIVR---TVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRK 432 (465)
Q Consensus 358 aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~-~gg~~~---e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~ 432 (465)
||+++. ++.|++++|||++|+|||+++ .+|... +.+.+ .|..+.. |+++++++|.+++++ ++.+++|
T Consensus 274 aD~~v~-----~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~--~G~~~~~~~~~~l~~~i~~ll~~-~~~~~~m 345 (380)
T PRK13609 274 TSCMIT-----KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER--KGAAVVIRDDEEVFAKTEALLQD-DMKLLQM 345 (380)
T ss_pred ccEEEe-----CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh--CCcEEEECCHHHHHHHHHHHHCC-HHHHHHH
Confidence 999884 234889999999999999986 454311 12222 3444444 999999999999998 8899999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 044542 433 GLACKEHALSMFTATKMASAYERFFLR 459 (465)
Q Consensus 433 ~~~~~~~~~~~fs~~~~~~~~~~~~~~ 459 (465)
++++++.... ++++++++.+++++..
T Consensus 346 ~~~~~~~~~~-~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 346 KEAMKSLYLP-EPADHIVDDILAENHV 371 (380)
T ss_pred HHHHHHhCCC-chHHHHHHHHHHhhhh
Confidence 9999887655 7999999999988764
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.95 E-value=3.4e-27 Score=232.48 Aligned_cols=272 Identities=18% Similarity=0.164 Sum_probs=193.8
Q ss_pred CCcEEEecCCc---hhHHhhhc---CCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcc
Q 044542 155 AFDYVHTESVS---LPHWRAKM---VPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSS 228 (465)
Q Consensus 155 ~~DiI~~~~~~---~~~~~~~~---~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (465)
..|+|++|++. ++..+.+. .| +.+.+|-.++. .+.+..+. .. ..++ ..+-.
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~~~~~-i~~f~HipfP~---~e~~~~lp------------~~----~~ll---~~~l~ 187 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERGPDAR-IGFFLHIPFPS---SEIFRCLP------------WR----EELL---RGLLG 187 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhCCCCe-EEEEEeCCCCC---hHHHhhCC------------Ch----HHHH---HHHhc
Confidence 56999999874 33334332 34 88888864321 11111110 00 1111 23345
Q ss_pred cCEEEEeChhHHHHHHHH----hC------------CCCCCEEEecCCCCCCCccCCcccC---cccccccCCCCCCcEE
Q 044542 229 YNQHICISNSAAEVLVKI----YQ------------LPQRNVHVILNGVDETKFVHDPEAG---VRFPEKLGVPANVSLV 289 (465)
Q Consensus 229 ~d~ii~~S~~~~~~~~~~----~~------------~~~~ki~vi~ngvd~~~~~~~~~~~---~~~r~~~g~~~~~~~~ 289 (465)
+|.|.+.+......+.+. .+ -...++.++|||||++.|.+..... ...++..+...++ .+
T Consensus 188 ~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~ 266 (460)
T cd03788 188 ADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGR-KL 266 (460)
T ss_pred CCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCC-EE
Confidence 888888886555444432 11 1235789999999999887543221 1122233444444 67
Q ss_pred EEEeeccccccCHHHHHHHHHHhhhcCCC----eEEEEEeCC-----cch----hHHHHhc------------CCeE-Ec
Q 044542 290 MGVAGRLVRDKGHPLLYEAFSSITRDHPG----VYLLVAGTG-----PWG----RRYAELG------------QNVK-VL 343 (465)
Q Consensus 290 l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g-----~~~----~~~~~l~------------~~V~-~~ 343 (465)
|+++||+.+.||++.+++|++.+.+++|+ ++|+++|.+ +.. +.++++. ..|+ +.
T Consensus 267 il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~ 346 (460)
T cd03788 267 IVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLY 346 (460)
T ss_pred EEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEe
Confidence 77999999999999999999999888776 678888643 222 2233221 1344 45
Q ss_pred CCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCe----EEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHH
Q 044542 344 GALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRT----VLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEAL 418 (465)
Q Consensus 344 g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~P----vI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i 418 (465)
|.++.+++..+|+.||++++||.+ ||+|++++|||+||+| ||+|+.+|..+ . +.+|+++++ |+++++++|
T Consensus 347 g~v~~~el~~~y~~aDv~v~pS~~-Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~-~---~~~g~lv~p~d~~~la~ai 421 (460)
T cd03788 347 RSLPREELAALYRAADVALVTPLR-DGMNLVAKEYVACQDDDPGVLILSEFAGAAE-E---LSGALLVNPYDIDEVADAI 421 (460)
T ss_pred CCCCHHHHHHHHHhccEEEeCccc-cccCcccceeEEEecCCCceEEEeccccchh-h---cCCCEEECCCCHHHHHHHH
Confidence 788999999999999999999986 9999999999999999 99999888873 3 568999999 999999999
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 044542 419 ELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERF 456 (465)
Q Consensus 419 ~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 456 (465)
.++++++++.++.+++++++++.+ |+++.+++++++-
T Consensus 422 ~~~l~~~~~e~~~~~~~~~~~v~~-~~~~~w~~~~l~~ 458 (460)
T cd03788 422 HRALTMPLEERRERHRKLREYVRT-HDVQAWANSFLDD 458 (460)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHh
Confidence 999998678888999999999866 9999999998764
No 73
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.95 E-value=7.5e-26 Score=217.79 Aligned_cols=306 Identities=18% Similarity=0.169 Sum_probs=209.7
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecC----CCcc--------
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAAND----HGSV-------- 148 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~-------- 148 (465)
||++.+. ..||..+++..++++|.++||+|++++....... ......+..+...... ...+
T Consensus 1 ~~~~~~~------~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (350)
T cd03785 1 RILIAGG------GTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFK 73 (350)
T ss_pred CEEEEec------CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcccccCCceEEEEecCcCCCChHHHHHHHHH
Confidence 4555554 4589999999999999999999999988653221 1111122223332221 0110
Q ss_pred ---------ccCCCCCCcEEEecCCc--hhHH---hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhh
Q 044542 149 ---------NLNNDGAFDYVHTESVS--LPHW---RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQE 214 (465)
Q Consensus 149 ---------~~~~~~~~DiI~~~~~~--~~~~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (465)
...++.+||+||+++.. +... ...++| ++...|+... .
T Consensus 74 ~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p-~v~~~~~~~~---------------------------~ 125 (350)
T cd03785 74 LLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIP-LVIHEQNAVP---------------------------G 125 (350)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCC-EEEEcCCCCc---------------------------c
Confidence 11167899999998642 2211 123456 6554443110 0
Q ss_pred hhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEee
Q 044542 215 AMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAG 294 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~G 294 (465)
... +..++.+|.++++|+...+. ++..++.+++||+|.+.+.+.+. +++++++++. .++++.|
T Consensus 126 ~~~-----~~~~~~~~~vi~~s~~~~~~------~~~~~~~~i~n~v~~~~~~~~~~-----~~~~~~~~~~-~~i~~~~ 188 (350)
T cd03785 126 LAN-----RLLARFADRVALSFPETAKY------FPKDKAVVTGNPVREEILALDRE-----RARLGLRPGK-PTLLVFG 188 (350)
T ss_pred HHH-----HHHHHhhCEEEEcchhhhhc------CCCCcEEEECCCCchHHhhhhhh-----HHhcCCCCCC-eEEEEEC
Confidence 111 13345689999999988765 35689999999999876654221 6677777766 4455666
Q ss_pred ccccccCHHH-HHHHHHHhhhcCCCeE-EEEEeCCcchhHHHHh----cCCeEEcCCCChhHHHHHHHhcCeEEecccCC
Q 044542 295 RLVRDKGHPL-LYEAFSSITRDHPGVY-LLVAGTGPWGRRYAEL----GQNVKVLGALEAHQLSEFYNALDVFVNPTLRP 368 (465)
Q Consensus 295 rl~~~Kg~~~-ll~a~~~l~~~~~~~~-l~ivG~g~~~~~~~~l----~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~ 368 (465)
+....|+.+. +++|++.+.+ ++++ ++++|+|. .+.+++. .++|++.|++ +++.++|+.||+++.++
T Consensus 189 g~~~~~~~~~~l~~a~~~l~~--~~~~~~~i~G~g~-~~~l~~~~~~~~~~v~~~g~~--~~~~~~l~~ad~~v~~s--- 260 (350)
T cd03785 189 GSQGARAINEAVPEALAELLR--KRLQVIHQTGKGD-LEEVKKAYEELGVNYEVFPFI--DDMAAAYAAADLVISRA--- 260 (350)
T ss_pred CcHhHHHHHHHHHHHHHHhhc--cCeEEEEEcCCcc-HHHHHHHHhccCCCeEEeehh--hhHHHHHHhcCEEEECC---
Confidence 6656667654 5588888863 3555 55778873 3444332 3689999998 89999999999999754
Q ss_pred CCCcHHHHHHHHcCCeEEecCCCCc--------ceeeeeeCCceEEeCC---CHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 044542 369 QGLDLTLIEAMHCGRTVLTPNYPSI--------VRTVVVNEELGYTFSP---NVKSFVEALELVIRDGPKVLQRKGLACK 437 (465)
Q Consensus 369 eg~~~~~~EAma~G~PvI~s~~gg~--------~~e~v~~~~~G~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~~~ 437 (465)
| +++++|||++|+|||+++.++. . +.+.+.++|+++++ |+++++++|.+++++ ++.+++|+++++
T Consensus 261 -g-~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~-~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~ 336 (350)
T cd03785 261 -G-ASTVAELAALGLPAILIPLPYAADDHQTANA-RALVKAGAAVLIPQEELTPERLAAALLELLSD-PERLKAMAEAAR 336 (350)
T ss_pred -C-HhHHHHHHHhCCCEEEeecCCCCCCcHHHhH-HHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 2 5799999999999999876541 2 45666788999985 799999999999988 899999999999
Q ss_pred HHHHhhCCHHHHHH
Q 044542 438 EHALSMFTATKMAS 451 (465)
Q Consensus 438 ~~~~~~fs~~~~~~ 451 (465)
++++. +..+++++
T Consensus 337 ~~~~~-~~~~~i~~ 349 (350)
T cd03785 337 SLARP-DAAERIAD 349 (350)
T ss_pred hcCCC-CHHHHHHh
Confidence 88765 67777654
No 74
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.95 E-value=3.1e-26 Score=223.57 Aligned_cols=271 Identities=17% Similarity=0.191 Sum_probs=197.3
Q ss_pred CCcEEEecCCc---hhHHhhhcCCc--EEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhccc
Q 044542 155 AFDYVHTESVS---LPHWRAKMVPN--VAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSY 229 (465)
Q Consensus 155 ~~DiI~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (465)
.-|+|++|++. ++..+....|. +.+.+|-.++. .+++..+. +-.. + .+-+-.+
T Consensus 127 ~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHipfP~---~e~f~~lp------------~r~~----i---l~gll~~ 184 (456)
T TIGR02400 127 PGDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPS---SEIYRTLP------------WRRE----L---LEGLLAY 184 (456)
T ss_pred CCCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCCCCC---hHHHhhCC------------cHHH----H---HHHHhcC
Confidence 34899999874 34444444432 66777754321 22222221 1111 1 1445688
Q ss_pred CEEEEeChhHHHHHHHH----hCC-----------CCCCEEEecCCCCCCCccCCcccC------cccccccCCCCCCcE
Q 044542 230 NQHICISNSAAEVLVKI----YQL-----------PQRNVHVILNGVDETKFVHDPEAG------VRFPEKLGVPANVSL 288 (465)
Q Consensus 230 d~ii~~S~~~~~~~~~~----~~~-----------~~~ki~vi~ngvd~~~~~~~~~~~------~~~r~~~g~~~~~~~ 288 (465)
|.|-+.+...++.+.+. +|. ...++.++|||||++.|.+..... ..+|++++ +. .
T Consensus 185 dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~-~ 260 (456)
T TIGR02400 185 DLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK---GR-K 260 (456)
T ss_pred CEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC---CC-e
Confidence 99999888877766552 221 345788999999999886543211 12455542 33 6
Q ss_pred EEEEeeccccccCHHHHHHHHHHhhhcCCC----eEEEEEe-----CCcchh----HHHHh--------c-----CCeEE
Q 044542 289 VMGVAGRLVRDKGHPLLYEAFSSITRDHPG----VYLLVAG-----TGPWGR----RYAEL--------G-----QNVKV 342 (465)
Q Consensus 289 ~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG-----~g~~~~----~~~~l--------~-----~~V~~ 342 (465)
+|+++||+.+.||++.+++|++++.+++|+ +.|+++| +++..+ .++++ + +.+.+
T Consensus 261 vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l 340 (456)
T TIGR02400 261 LIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYL 340 (456)
T ss_pred EEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEE
Confidence 777999999999999999999999888775 5577775 233322 23333 1 12344
Q ss_pred cCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCe----EEecCCCCcceeeeeeCCceEEeCC-CHHHHHHH
Q 044542 343 LGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRT----VLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEA 417 (465)
Q Consensus 343 ~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~P----vI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~ 417 (465)
.|.++.+++..+|++||++++||.+ ||+|++++||||||+| +|+|+.+|.. +.+. +|+++++ |+++++++
T Consensus 341 ~~~~~~~el~aly~aaDv~vv~S~~-EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~-~~l~---~gllVnP~d~~~lA~a 415 (456)
T TIGR02400 341 NRSYDREELMALYRAADVGLVTPLR-DGMNLVAKEYVAAQDPKDGVLILSEFAGAA-QELN---GALLVNPYDIDGMADA 415 (456)
T ss_pred cCCCCHHHHHHHHHhCcEEEECccc-cccCccHHHHHHhcCCCCceEEEeCCCCCh-HHhC---CcEEECCCCHHHHHHH
Confidence 5688999999999999999999986 9999999999999999 9999998887 4442 7999999 99999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 044542 418 LELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 418 i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
|.++++++++.++++.++.++++.+ ||++.+++++++-+
T Consensus 416 I~~aL~~~~~er~~r~~~~~~~v~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 416 IARALTMPLEEREERHRAMMDKLRK-NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 9999998788899999999999877 89999999988754
No 75
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=1.6e-26 Score=224.34 Aligned_cols=330 Identities=9% Similarity=0.069 Sum_probs=223.7
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCC---cEEEEEeCCCCCCCCC-c-c-------cCCcceEE-Eee-
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARG---HEIHVFTAPSDRKPHN-D-V-------HQGNLHVH-FAA- 142 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G---~~V~v~~~~~~~~~~~-~-~-------~~~~~~v~-~~~- 142 (465)
.++||||+++..+ .+|..+.+..|.++|.+.| .+|.++-.-....... . . ....+.+. ...
T Consensus 3 ~~~~~vlil~~~~-----G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~ 77 (391)
T PRK13608 3 TQNKKILIITGSF-----GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYY 77 (391)
T ss_pred CCCceEEEEECCC-----CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3467999999864 3788888999999998875 4565543332211111 0 0 00000000 000
Q ss_pred cCC--------------CccccCCCCCCcEEEecCCchhHHh-h----hcCCcEEEEecchhHHHHhhhhhhhhhhcCCC
Q 044542 143 NDH--------------GSVNLNNDGAFDYVHTESVSLPHWR-A----KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNG 203 (465)
Q Consensus 143 ~~~--------------~~~~~~~~~~~DiI~~~~~~~~~~~-~----~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~ 203 (465)
... ......++.+||+|+++.+...... . .++| ++....+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~~~~l~~~~~~~iP-~~~v~td~~~~---------------- 140 (391)
T PRK13608 78 SRPDKLDKCFYKYYGLNKLINLLIKEKPDLILLTFPTPVMSVLTEQFNINIP-VATVMTDYRLH---------------- 140 (391)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHHHHHHHHHhcCCCCC-EEEEeCCCCcc----------------
Confidence 000 0011116789999999765432221 1 2457 65544442100
Q ss_pred CCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCC
Q 044542 204 VLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVP 283 (465)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~ 283 (465)
. .++.+.+|.+++.|+.+++.+.+ .|++++++.+++++++....... .....++++|++
T Consensus 141 ---------~---------~w~~~~~d~~~v~s~~~~~~l~~-~gi~~~ki~v~GiPv~~~f~~~~--~~~~~~~~~~l~ 199 (391)
T PRK13608 141 ---------K---------NWITPYSTRYYVATKETKQDFID-VGIDPSTVKVTGIPIDNKFETPI--DQKQWLIDNNLD 199 (391)
T ss_pred ---------c---------ccccCCCCEEEECCHHHHHHHHH-cCCCHHHEEEECeecChHhcccc--cHHHHHHHcCCC
Confidence 0 03346789999999999999987 58999999999888875433222 234567788988
Q ss_pred CCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEE-eCCc-chhHHHH-h--cCCeEEcCCCChhHHHHHHHhc
Q 044542 284 ANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVA-GTGP-WGRRYAE-L--GQNVKVLGALEAHQLSEFYNAL 358 (465)
Q Consensus 284 ~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~g~-~~~~~~~-l--~~~V~~~g~v~~~~~~~~~~~a 358 (465)
++++.++++.|++...||++.+++++.+ ..++++++++ |.+. ..+.+++ + .++|.++|++ +++.++|++|
T Consensus 200 ~~~~~ilv~~G~lg~~k~~~~li~~~~~---~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~--~~~~~~~~~a 274 (391)
T PRK13608 200 PDKQTILMSAGAFGVSKGFDTMITDILA---KSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYT--KHMNEWMASS 274 (391)
T ss_pred CCCCEEEEECCCcccchhHHHHHHHHHh---cCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEecc--chHHHHHHhh
Confidence 7776777789999988999999998632 2367888665 5442 2233433 2 2689999998 6899999999
Q ss_pred CeEEecccCCCCCcHHHHHHHHcCCeEEecCC-CCcce---eeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHH
Q 044542 359 DVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNY-PSIVR---TVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGL 434 (465)
Q Consensus 359 Dv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~-gg~~~---e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~ 434 (465)
|++|.. +.|+++.|||++|+|+|+++. +|..+ ..+.+.+.|+... |+++++++|.+++++ ++.+++|++
T Consensus 275 Dl~I~k-----~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~-~~~~l~~~i~~ll~~-~~~~~~m~~ 347 (391)
T PRK13608 275 QLMITK-----PGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD-TPEEAIKIVASLTNG-NEQLTNMIS 347 (391)
T ss_pred hEEEeC-----CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC-CHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 999962 347899999999999999863 33110 1233555666554 999999999999998 899999999
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhcC
Q 044542 435 ACKEHALSMFTATKMASAYERFFLRMKN 462 (465)
Q Consensus 435 ~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 462 (465)
++++..+. ++++.+++.+.+++..+.+
T Consensus 348 ~~~~~~~~-~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 348 TMEQDKIK-YATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHhhhhhh
Confidence 99998766 8999999999999876543
No 76
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.95 E-value=3.1e-25 Score=210.07 Aligned_cols=364 Identities=16% Similarity=0.116 Sum_probs=253.8
Q ss_pred CCCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHh---------CCcEEEEEeCCCCCCCCC-------cccCCcceE
Q 044542 75 PTFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAA---------RGHEIHVFTAPSDRKPHN-------DVHQGNLHV 138 (465)
Q Consensus 75 ~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~---------~G~~V~v~~~~~~~~~~~-------~~~~~~~~v 138 (465)
+.+..+++++.++.. ..||.++-....+-.+.. .|++|.+++......... +.......+
T Consensus 30 ~~~~~~~~~~~~~~~----~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i 105 (495)
T KOG0853|consen 30 PEKPFEHVTFIHPDL----GIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPI 105 (495)
T ss_pred ccccchhheeecccc----ccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCce
Confidence 345567899998874 669999988888888888 999999999876554211 111111111
Q ss_pred --EE--eecCCC-ccccC------------------CCCCCcEEEecCCchhHHhhh---c---CCcEEEEecchhHHHH
Q 044542 139 --HF--AANDHG-SVNLN------------------NDGAFDYVHTESVSLPHWRAK---M---VPNVAVTWHGIWYEVM 189 (465)
Q Consensus 139 --~~--~~~~~~-~~~~~------------------~~~~~DiI~~~~~~~~~~~~~---~---~p~~v~~~h~~~~~~~ 189 (465)
.. .+...+ .+... ...+.|+|+........++.. + +++..+.+|.......
T Consensus 106 ~vv~~~lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~~~~~~p~~~~~i~~~~h~~~~lla 185 (495)
T KOG0853|consen 106 LVVGDWLPRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLLKQLSGPDVIIKIYFYCHFPDSLLA 185 (495)
T ss_pred EEEEeecCcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHHHHhcCCcccceeEEeccchHHHhc
Confidence 11 111111 00100 225678888776644444332 2 3446777776543322
Q ss_pred hhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHh-CCCCCCEEEecCCCCCCCccC
Q 044542 190 HSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIY-QLPQRNVHVILNGVDETKFVH 268 (465)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~-~~~~~ki~vi~ngvd~~~~~~ 268 (465)
... + .........+.+... .....++.+++.|...+..+...+ .+...++.+.+.++|.+.+.+
T Consensus 186 ~r~---------g----~~~~l~~~~l~~~e~--e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~ 250 (495)
T KOG0853|consen 186 KRL---------G----VLKVLYRHALDKIEE--ETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTY 250 (495)
T ss_pred ccc---------C----ccceeehhhhhhhhh--hhhhccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccc
Confidence 211 0 001111222222211 456788999999999999888765 344555899999999877664
Q ss_pred C-----cccCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcC-----CCeEEEEEeCC-------cchh
Q 044542 269 D-----PEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDH-----PGVYLLVAGTG-------PWGR 331 (465)
Q Consensus 269 ~-----~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~-----~~~~l~ivG~g-------~~~~ 331 (465)
. ...+...|...++...+ ..+.-+.++.+.||++.+++++..+.... ++.++.++|+. ...+
T Consensus 251 ~~~~~~~~~~~~~r~~~~v~~~d-~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~ 329 (495)
T KOG0853|consen 251 GQYESHLELRLPVRLYRGVSGID-RFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVE 329 (495)
T ss_pred cccccchhcccccceeeeecccc-eEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHH
Confidence 2 22234455666766655 66678899999999999999999998776 46789999832 1122
Q ss_pred HHHH-------h---cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeC
Q 044542 332 RYAE-------L---GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNE 401 (465)
Q Consensus 332 ~~~~-------l---~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~ 401 (465)
++++ + ++.|.|+...++.+...+++.+.+++..... |.||++++|||+||+|||+++.||.. |++.++
T Consensus 330 ~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~-E~FGiv~IEAMa~glPvvAt~~GGP~-EiV~~~ 407 (495)
T KOG0853|consen 330 YLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPAN-EHFGIVPIEAMACGLPVVATNNGGPA-EIVVHG 407 (495)
T ss_pred HHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCC-CCccceeHHHHhcCCCEEEecCCCce-EEEEcC
Confidence 2222 2 3778888888777777777777776653334 99999999999999999999999998 999999
Q ss_pred CceEEeCCCHH---HHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhc
Q 044542 402 ELGYTFSPNVK---SFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRMK 461 (465)
Q Consensus 402 ~~G~l~~~d~~---~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 461 (465)
.+|++++++.+ .+++++.++.+| ++.+.+|++++++++++.|+|+++.+++.++..+..
T Consensus 408 ~tG~l~dp~~e~~~~~a~~~~kl~~~-p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 408 VTGLLIDPGQEAVAELADALLKLRRD-PELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred CcceeeCCchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 99999999666 699999999999 999999999999999999999999999999887543
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.94 E-value=4.2e-26 Score=221.11 Aligned_cols=221 Identities=14% Similarity=0.125 Sum_probs=172.7
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHH
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHP 303 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~ 303 (465)
++.+.+|.++++|+..++.+.+ +|++++++.+++++++.+.+.+. ..+..+|+++|++++. .+++++|+....|++.
T Consensus 146 w~~~~~d~~~~~s~~~~~~l~~-~g~~~~ki~v~g~~v~~~f~~~~-~~~~~~r~~~gl~~~~-~~il~~Gg~~g~~~~~ 222 (382)
T PLN02605 146 WFHKGVTRCFCPSEEVAKRALK-RGLEPSQIRVYGLPIRPSFARAV-RPKDELRRELGMDEDL-PAVLLMGGGEGMGPLE 222 (382)
T ss_pred cccCCCCEEEECCHHHHHHHHH-cCCCHHHEEEECcccCHhhccCC-CCHHHHHHHcCCCCCC-cEEEEECCCcccccHH
Confidence 4457899999999999999887 58999999999999987654332 2345688999998877 5666899988899999
Q ss_pred HHHHHHHHhhh----cCCCeE-EEEEeCCc-chhHHHHhc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHH
Q 044542 304 LLYEAFSSITR----DHPGVY-LLVAGTGP-WGRRYAELG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTL 375 (465)
Q Consensus 304 ~ll~a~~~l~~----~~~~~~-l~ivG~g~-~~~~~~~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~ 375 (465)
.+++++..+.. ..++.+ ++++|.+. ..+.+++.. .+|+++|++ +++.++|++||++|.++ .|+++
T Consensus 223 ~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~--~~~~~l~~aaDv~V~~~-----g~~ti 295 (382)
T PLN02605 223 ETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFV--TNMEEWMGACDCIITKA-----GPGTI 295 (382)
T ss_pred HHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEecc--ccHHHHHHhCCEEEECC-----CcchH
Confidence 99999876531 124565 67788764 345555543 579999999 58999999999999854 26799
Q ss_pred HHHHHcCCeEEecCC------CCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHH
Q 044542 376 IEAMHCGRTVLTPNY------PSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKM 449 (465)
Q Consensus 376 ~EAma~G~PvI~s~~------gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~ 449 (465)
+|||+||+|+|+++. ++. +.+.+++.|+.+. |+++++++|.+++.++++.+++|++++++.... .+.+.+
T Consensus 296 ~EAma~g~PvI~~~~~pgqe~gn~--~~i~~~g~g~~~~-~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~-~a~~~i 371 (382)
T PLN02605 296 AEALIRGLPIILNGYIPGQEEGNV--PYVVDNGFGAFSE-SPKEIARIVAEWFGDKSDELEAMSENALKLARP-EAVFDI 371 (382)
T ss_pred HHHHHcCCCEEEecCCCccchhhH--HHHHhCCceeecC-CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-chHHHH
Confidence 999999999999984 232 2345566676653 999999999999987578889999999998877 588888
Q ss_pred HHHHHHHHH
Q 044542 450 ASAYERFFL 458 (465)
Q Consensus 450 ~~~~~~~~~ 458 (465)
++.+.++..
T Consensus 372 ~~~l~~~~~ 380 (382)
T PLN02605 372 VHDLHELVR 380 (382)
T ss_pred HHHHHHHhh
Confidence 887776543
No 78
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.94 E-value=6.9e-25 Score=210.94 Aligned_cols=306 Identities=15% Similarity=0.124 Sum_probs=198.9
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC----Cc--------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH----GS-------- 147 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~-------- 147 (465)
|||++++.. .||.......|+++|.++||+|++++....... ......+..++...... +.
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~-~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~ 73 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK-RLVPKAGIEFYFIPVGGLRRKGSFRLIKTPL 73 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh-cccccCCCceEEEeccCcCCCChHHHHHHHH
Confidence 689988864 366666667999999999999999986432111 11112233333332211 00
Q ss_pred ---------cccCCCCCCcEEEecCCc--hhHH---hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhh
Q 044542 148 ---------VNLNNDGAFDYVHTESVS--LPHW---RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQ 213 (465)
Q Consensus 148 ---------~~~~~~~~~DiI~~~~~~--~~~~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (465)
.++.++.+||+||++... .... ...++| ++...++.. .
T Consensus 74 ~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p-~v~~~~~~~---------------------------~ 125 (348)
T TIGR01133 74 KLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIP-LFHHEQNAV---------------------------P 125 (348)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCC-EEEECCCCC---------------------------c
Confidence 011177899999998642 2222 122456 553322210 0
Q ss_pred hhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEe
Q 044542 214 EAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVA 293 (465)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~ 293 (465)
... ++..++.+|.++++|+.+++.+ +..+++||+|...+.+.. .+++++++++. .+++++
T Consensus 126 ~~~-----~~~~~~~~d~ii~~~~~~~~~~---------~~~~i~n~v~~~~~~~~~-----~~~~~~~~~~~-~~i~~~ 185 (348)
T TIGR01133 126 GLT-----NKLLSRFAKKVLISFPGAKDHF---------EAVLVGNPVRQEIRSLPV-----PRERFGLREGK-PTILVL 185 (348)
T ss_pred cHH-----HHHHHHHhCeeEECchhHhhcC---------CceEEcCCcCHHHhcccc-----hhhhcCCCCCC-eEEEEE
Confidence 011 1244567899999999876654 237999999876554321 13356676555 667788
Q ss_pred eccccccCHHH-HHHHHHHhhhcCCCeEE-EEEeCCcchhHHHHhc---CCeEEcCCCChhHHHHHHHhcCeEEecccCC
Q 044542 294 GRLVRDKGHPL-LYEAFSSITRDHPGVYL-LVAGTGPWGRRYAELG---QNVKVLGALEAHQLSEFYNALDVFVNPTLRP 368 (465)
Q Consensus 294 Grl~~~Kg~~~-ll~a~~~l~~~~~~~~l-~ivG~g~~~~~~~~l~---~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~ 368 (465)
|+....|++.. +++|++.+.+. +.++ +++|+++. +.+++.. .-.....+.. .++.++|+.||++|.++
T Consensus 186 gg~~~~~~~~~~l~~a~~~l~~~--~~~~~~~~g~~~~-~~l~~~~~~~~l~~~v~~~~-~~~~~~l~~ad~~v~~~--- 258 (348)
T TIGR01133 186 GGSQGAKILNELVPKALAKLAEK--GIQIVHQTGKNDL-EKVKNVYQELGIEAIVTFID-ENMAAAYAAADLVISRA--- 258 (348)
T ss_pred CCchhHHHHHHHHHHHHHHHhhc--CcEEEEECCcchH-HHHHHHHhhCCceEEecCcc-cCHHHHHHhCCEEEECC---
Confidence 88777888654 55888888653 3454 44555433 4444322 1112223332 38999999999999753
Q ss_pred CCCcHHHHHHHHcCCeEEecCCCCcce------eeeeeCCceEEeCC-C--HHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 044542 369 QGLDLTLIEAMHCGRTVLTPNYPSIVR------TVVVNEELGYTFSP-N--VKSFVEALELVIRDGPKVLQRKGLACKEH 439 (465)
Q Consensus 369 eg~~~~~~EAma~G~PvI~s~~gg~~~------e~v~~~~~G~l~~~-d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 439 (465)
| |++++|||++|+|+|+++.++..+ +++.++++|+++++ | +++++++|.+++++ ++.+++|+++++++
T Consensus 259 -g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~ 335 (348)
T TIGR01133 259 -G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD-PANLEAMAEAARKL 335 (348)
T ss_pred -C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcC-HHHHHHHHHHHHhc
Confidence 3 689999999999999998765321 36778889999987 5 99999999999998 89999999999888
Q ss_pred HHhhCCHHHHHH
Q 044542 440 ALSMFTATKMAS 451 (465)
Q Consensus 440 ~~~~fs~~~~~~ 451 (465)
+++ ...+++++
T Consensus 336 ~~~-~~~~~i~~ 346 (348)
T TIGR01133 336 AKP-DAAKRIAE 346 (348)
T ss_pred CCc-cHHHHHHh
Confidence 766 46666554
No 79
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.94 E-value=1e-23 Score=185.93 Aligned_cols=358 Identities=13% Similarity=0.131 Sum_probs=246.6
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC--CcEEEEEeCCCCCCCCC---------cccCCcceEEEeecCCC---
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAAR--GHEIHVFTAPSDRKPHN---------DVHQGNLHVHFAANDHG--- 146 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~--- 146 (465)
.+++++++. ...||+|++++.-.+.+++. .+...+++.+....... ++..+...+.+...+.+
T Consensus 45 tvgfFHPYC---NAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lV 121 (465)
T KOG1387|consen 45 TVGFFHPYC---NAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLV 121 (465)
T ss_pred EEEEecccc---cCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeee
Confidence 689998876 57789999999999999876 34444444432221111 12222233333332221
Q ss_pred ---ccccC-----------------CCCCCcEEEecC-Cc--hhHHh-hhcCCcEEEEecchhHHHHhhhhhhhhhhcCC
Q 044542 147 ---SVNLN-----------------NDGAFDYVHTES-VS--LPHWR-AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQN 202 (465)
Q Consensus 147 ---~~~~~-----------------~~~~~DiI~~~~-~~--~~~~~-~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~ 202 (465)
.|... -+..|||.+-.. +. ++... .+++| ++...|-.. ...++...+..++.
T Consensus 122 ea~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~~r~l~~~~-V~aYvHYP~---iS~DML~~l~qrq~ 197 (465)
T KOG1387|consen 122 EASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPIFRRLRRIP-VVAYVHYPT---ISTDMLKKLFQRQK 197 (465)
T ss_pred ecccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHHHHHHccCc-eEEEEeccc---ccHHHHHHHHhhhh
Confidence 12111 578899987653 32 22222 34677 888888532 23444444443332
Q ss_pred CCCCCchhhh-hhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccC
Q 044542 203 GVLPGSMTEL-QEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLG 281 (465)
Q Consensus 203 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g 281 (465)
.....+.+.. ++++..+.. ..-..||.+++.|.+..+.+.+.++. .++.+++++++++.+......
T Consensus 198 s~~l~~~KlaY~rlFa~lY~--~~G~~ad~vm~NssWT~nHI~qiW~~--~~~~iVyPPC~~e~lks~~~t--------- 264 (465)
T KOG1387|consen 198 SGILVWGKLAYWRLFALLYQ--SAGSKADIVMTNSSWTNNHIKQIWQS--NTCSIVYPPCSTEDLKSKFGT--------- 264 (465)
T ss_pred cchhhhHHHHHHHHHHHHHH--hccccceEEEecchhhHHHHHHHhhc--cceeEEcCCCCHHHHHHHhcc---------
Confidence 2111122222 222223222 55578899999999999999998875 789999999998754332211
Q ss_pred CCCCCcEEEEEeeccccccCHHHHHHHHH--Hhhh----cCCCeEEEEEeCCcc---hhHHHHh-------c--CCeEEc
Q 044542 282 VPANVSLVMGVAGRLVRDKGHPLLYEAFS--SITR----DHPGVYLLVAGTGPW---GRRYAEL-------G--QNVKVL 343 (465)
Q Consensus 282 ~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~--~l~~----~~~~~~l~ivG~g~~---~~~~~~l-------~--~~V~~~ 343 (465)
...+...++++|.+.|+|++. +++.++ ..+. ..++++|+++|+... +++++.| . ++|.|.
T Consensus 265 -e~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~ 342 (465)
T KOG1387|consen 265 -EGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFE 342 (465)
T ss_pred -cCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEE
Confidence 123336788999999999999 554443 3322 225799999997432 3333332 2 789999
Q ss_pred CCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeC---CceEEeCCCHHHHHHHHHH
Q 044542 344 GALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNE---ELGYTFSPNVKSFVEALEL 420 (465)
Q Consensus 344 g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~---~~G~l~~~d~~~la~~i~~ 420 (465)
-.+|.+++..+|..|.+.|+.. +.|.||+.+.|+||+|+-+|+.+.||..-++|.+. .+|++.+ +.++.++++.+
T Consensus 343 ~N~Py~~lv~lL~~a~iGvh~M-wNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~-t~~EYaE~iLk 420 (465)
T KOG1387|consen 343 KNVPYEKLVELLGKATIGVHTM-WNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP-TDEEYAEAILK 420 (465)
T ss_pred ecCCHHHHHHHhccceeehhhh-hhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC-ChHHHHHHHHH
Confidence 9999999999999999999976 57999999999999999999999988776777653 4688886 88999999999
Q ss_pred HHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCC
Q 044542 421 VIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRMKNP 463 (465)
Q Consensus 421 ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 463 (465)
++..+++.+..|+++||..+.+ |+..+.-+.+...+.+++.+
T Consensus 421 Iv~~~~~~r~~~r~~AR~s~~R-FsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 421 IVKLNYDERNMMRRNARKSLAR-FGELKFDKDWENPICKLLEE 462 (465)
T ss_pred HHHcCHHHHHHHHHHHHHHHHH-hhHHHHHHhHhHHHHHhhcc
Confidence 9998788888999999988766 99999999999999888765
No 80
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.93 E-value=1.9e-25 Score=192.06 Aligned_cols=159 Identities=30% Similarity=0.610 Sum_probs=137.6
Q ss_pred ccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhc-CCCeEEEEEeCCcchhHHHHh----c--CCeEEcCCCChh
Q 044542 277 PEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRD-HPGVYLLVAGTGPWGRRYAEL----G--QNVKVLGALEAH 349 (465)
Q Consensus 277 r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~-~~~~~l~ivG~g~~~~~~~~l----~--~~V~~~g~v~~~ 349 (465)
+.+.+.+.++ .+++++|++.+.||++.+++|+..+.++ .++++++|+|.+.....++.+ . +++.++|.++.+
T Consensus 6 ~~~~~~~~~~-~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (172)
T PF00534_consen 6 REKLKIPDKK-KIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDD 84 (172)
T ss_dssp HHHTTT-TTS-EEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHH
T ss_pred HHHcCCCCCC-eEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccc
Confidence 4444545454 8888999999999999999999999864 689999999977665544432 2 899999999999
Q ss_pred HHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHH
Q 044542 350 QLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKV 428 (465)
Q Consensus 350 ~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~ 428 (465)
++..+|+.||++++||.+ |++|++++|||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.+++++ ++.
T Consensus 85 ~l~~~~~~~di~v~~s~~-e~~~~~~~Ea~~~g~pvI~~~~~~~~-e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~-~~~ 161 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRN-EGFGLSLLEAMACGCPVIASDIGGNN-EIINDGVNGFLFDPNDIEELADAIEKLLND-PEL 161 (172)
T ss_dssp HHHHHHHHTSEEEE-BSS-BSS-HHHHHHHHTT-EEEEESSTHHH-HHSGTTTSEEEESTTSHHHHHHHHHHHHHH-HHH
T ss_pred ccccccccceeccccccc-cccccccccccccccceeeccccCCc-eeeccccceEEeCCCCHHHHHHHHHHHHCC-HHH
Confidence 999999999999999987 99999999999999999999999988 89999999999999 999999999999999 899
Q ss_pred HHHHHHHHHHH
Q 044542 429 LQRKGLACKEH 439 (465)
Q Consensus 429 ~~~~~~~~~~~ 439 (465)
++.|+++++++
T Consensus 162 ~~~l~~~~~~~ 172 (172)
T PF00534_consen 162 RQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhcCC
Confidence 99999999875
No 81
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.92 E-value=9.4e-24 Score=218.59 Aligned_cols=275 Identities=17% Similarity=0.198 Sum_probs=195.7
Q ss_pred cEEEecCCc---hhHHhhhcCCc--EEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCE
Q 044542 157 DYVHTESVS---LPHWRAKMVPN--VAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQ 231 (465)
Q Consensus 157 DiI~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 231 (465)
|+|.+|.+. ++..+....|. +.+.+|-.++. +++++.+. +-. .+ .+-+-.||.
T Consensus 149 d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPFPs---~e~fr~lp------------~r~----~i---l~gll~aDl 206 (797)
T PLN03063 149 DVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPS---SEIYKTLP------------SRS----EL---LRAVLTADL 206 (797)
T ss_pred CEEEEecchhhhHHHHHHHhCCCCcEEEEecCCCCC---HHHHhhCC------------CHH----HH---HHHHhcCCE
Confidence 788888874 34445444332 67777765432 22222221 001 11 134457788
Q ss_pred EEEeChhHHHHHHHH----hCC-----------CCCCEEEecCCCCCCCccCCcccC------cccccccCCCCCCcEEE
Q 044542 232 HICISNSAAEVLVKI----YQL-----------PQRNVHVILNGVDETKFVHDPEAG------VRFPEKLGVPANVSLVM 290 (465)
Q Consensus 232 ii~~S~~~~~~~~~~----~~~-----------~~~ki~vi~ngvd~~~~~~~~~~~------~~~r~~~g~~~~~~~~l 290 (465)
|-+.+....+.+.+. .+. ...++.++|||||.+.|.+..... ..++++++ ++ .+|
T Consensus 207 igF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~-~lI 282 (797)
T PLN03063 207 IGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GR-KVI 282 (797)
T ss_pred EEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CC-eEE
Confidence 888887777666541 122 125789999999998886532211 12333332 33 566
Q ss_pred EEeeccccccCHHHHHHHHHHhhhcCCCeE----EEEEe-----CCcchh----HHHHhc----C--------CeE-EcC
Q 044542 291 GVAGRLVRDKGHPLLYEAFSSITRDHPGVY----LLVAG-----TGPWGR----RYAELG----Q--------NVK-VLG 344 (465)
Q Consensus 291 ~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~----l~ivG-----~g~~~~----~~~~l~----~--------~V~-~~g 344 (465)
+++||+.+.||++.+++|++.+.+++|+++ |+.++ +++..+ .++++. . .|+ +.+
T Consensus 283 l~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~ 362 (797)
T PLN03063 283 LGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDC 362 (797)
T ss_pred EEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecC
Confidence 699999999999999999999988888753 44333 222222 233332 1 122 345
Q ss_pred CCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCe----EEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHH
Q 044542 345 ALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRT----VLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALE 419 (465)
Q Consensus 345 ~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~P----vI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~ 419 (465)
.++.+++..+|+.||++++||.+ ||+|++++|||+||+| +|+|+.+|.. +.+ +..|++++| |+++++++|.
T Consensus 363 ~v~~~el~aly~~ADvfvvtSlr-EGmnLv~lEamA~g~p~~gvlVlSe~~G~~-~~l--~~~allVnP~D~~~lA~AI~ 438 (797)
T PLN03063 363 SVDFNYLCALYAITDVMLVTSLR-DGMNLVSYEFVACQKAKKGVLVLSEFAGAG-QSL--GAGALLVNPWNITEVSSAIK 438 (797)
T ss_pred CCCHHHHHHHHHhCCEEEeCccc-cccCcchhhHheeecCCCCCEEeeCCcCch-hhh--cCCeEEECCCCHHHHHHHHH
Confidence 78999999999999999999987 9999999999999999 9999999988 443 557999999 9999999999
Q ss_pred HHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcC
Q 044542 420 LVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRMKN 462 (465)
Q Consensus 420 ~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~ 462 (465)
+++..+++++++..++.++++.+ ++|+..++.+++.++++..
T Consensus 439 ~aL~m~~~er~~r~~~~~~~v~~-~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 439 EALNMSDEERETRHRHNFQYVKT-HSAQKWADDFMSELNDIIV 480 (797)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhh-CCHHHHHHHHHHHHHHHhh
Confidence 99997688888888899999888 7999999999998887653
No 82
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.91 E-value=1.3e-22 Score=192.73 Aligned_cols=281 Identities=15% Similarity=0.054 Sum_probs=192.4
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC-cccCCcceEEEeecCCCccccCCCCCC-cEEEecCCchhH---
Q 044542 94 APGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN-DVHQGNLHVHFAANDHGSVNLNNDGAF-DYVHTESVSLPH--- 168 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~-DiI~~~~~~~~~--- 168 (465)
...|+...-....+.+.+.|+++.-+.......... +... .........++ |+||++++.+..
T Consensus 13 ~~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Dvv~~~~P~~~~~~~ 80 (333)
T PRK09814 13 GNSAALKAKNDVTKIAKQLGFEELGIYFYNIKRDSLSERSK------------RLDGILASLKPGDIVIFQFPTWNGFEF 80 (333)
T ss_pred ccchHHHHHHHHHHHHHHCCCeEeEEEecccccchHHHHHH------------HHHHHHhcCCCCCEEEEECCCCchHHH
Confidence 445667777888999999999876655432111100 0000 00011123455 999998764321
Q ss_pred ------Hhhh-cCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHH
Q 044542 169 ------WRAK-MVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAE 241 (465)
Q Consensus 169 ------~~~~-~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~ 241 (465)
.+.+ +.| ++..+||.+....... ... ...++.+++++|.++++|+.+++
T Consensus 81 ~~~~~~~~k~~~~k-~i~~ihD~~~~~~~~~-----------------~~~------~~~~~~~~~~aD~iI~~S~~~~~ 136 (333)
T PRK09814 81 DRLFVDKLKKKQVK-IIILIHDIEPLRFDSN-----------------YYL------MKEEIDMLNLADVLIVHSKKMKD 136 (333)
T ss_pred HHHHHHHHHHcCCE-EEEEECCcHHHhcccc-----------------chh------hHHHHHHHHhCCEEEECCHHHHH
Confidence 1111 356 9999999765321100 011 11234778899999999999999
Q ss_pred HHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEE
Q 044542 242 VLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYL 321 (465)
Q Consensus 242 ~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l 321 (465)
.+.+ .|++..++.++++..+...... +.. +.. ...++|+|++....++ + +..++++|
T Consensus 137 ~l~~-~g~~~~~i~~~~~~~~~~~~~~--------~~~---~~~-~~~i~yaG~l~k~~~l----~------~~~~~~~l 193 (333)
T PRK09814 137 RLVE-EGLTTDKIIVQGIFDYLNDIEL--------VKT---PSF-QKKINFAGNLEKSPFL----K------NWSQGIKL 193 (333)
T ss_pred HHHH-cCCCcCceEecccccccccccc--------ccc---ccC-CceEEEecChhhchHH----H------hcCCCCeE
Confidence 9988 6887788888776554321111 000 112 2578899999843321 1 12367899
Q ss_pred EEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccC----------CCCCcHHHHHHHHcCCeEEecCCC
Q 044542 322 LVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLR----------PQGLDLTLIEAMHCGRTVLTPNYP 391 (465)
Q Consensus 322 ~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~----------~eg~~~~~~EAma~G~PvI~s~~g 391 (465)
+++|+|+..+ ...++|+|+|+++++++..+|+. |+.+.+... .-++|.++.|+||||+|||+++.+
T Consensus 194 ~i~G~g~~~~---~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~ 269 (333)
T PRK09814 194 TVFGPNPEDL---ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKA 269 (333)
T ss_pred EEECCCcccc---ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCc
Confidence 9999987654 34489999999999999999998 766654311 136899999999999999999999
Q ss_pred CcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Q 044542 392 SIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALS 442 (465)
Q Consensus 392 g~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~ 442 (465)
+.. +++.++.+|++++ +.+++++++.++ + ++.+++|++++++.++.
T Consensus 270 ~~~-~~V~~~~~G~~v~-~~~el~~~l~~~--~-~~~~~~m~~n~~~~~~~ 315 (333)
T PRK09814 270 AIA-DFIVENGLGFVVD-SLEELPEIIDNI--T-EEEYQEMVENVKKISKL 315 (333)
T ss_pred cHH-HHHHhCCceEEeC-CHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHH
Confidence 998 9999999999998 788999999985 2 56788999999988766
No 83
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.91 E-value=1.3e-22 Score=182.56 Aligned_cols=216 Identities=28% Similarity=0.366 Sum_probs=157.9
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCccccCCCCCCcEEEe
Q 044542 82 LAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSVNLNNDGAFDYVHT 161 (465)
Q Consensus 82 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~DiI~~ 161 (465)
|++++..++ +..||.+++...+++.|++.||+|+++. ......+...++.+||+||+
T Consensus 1 i~~i~~~~~--~~~~G~~~~~~~l~~~L~~~g~~v~v~~---------------------~~~~~~~~~~~~~~~D~i~~ 57 (229)
T cd01635 1 ILLVSTPLL--PGGGGVELVLLDLAKALARRGHEVEVVA---------------------LLLLLLLRILRGFKPDVVHA 57 (229)
T ss_pred CeeeccccC--CCCCCchhHHHHHHHHHHHcCCeEEEEE---------------------echHHHHHHHhhcCCCEEEE
Confidence 466666654 3579999999999999999999999999 00001122224578999999
Q ss_pred cCCchhHH------hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEe
Q 044542 162 ESVSLPHW------RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICI 235 (465)
Q Consensus 162 ~~~~~~~~------~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 235 (465)
++...... ...+.| ++.+.|+.+....... ...... .....++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~-------------------~~~~~~------~~~~~~~~~--- 108 (229)
T cd01635 58 HGYYPAPLALLLAARLLGIP-LVLTVHGVNRSLLEGV-------------------PLSLLA------LSIGLADKV--- 108 (229)
T ss_pred cCCCcHHHHHHHHHhhCCCC-EEEEEcCccHhhcccC-------------------cHHHHH------HHHhhcceE---
Confidence 98643322 233556 9999998764321100 000000 000011111
Q ss_pred ChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhc
Q 044542 236 SNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRD 315 (465)
Q Consensus 236 S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~ 315 (465)
++|++.+.||++.+++++..+.++
T Consensus 109 --------------------------------------------------------~~g~~~~~k~~~~~~~a~~~l~~~ 132 (229)
T cd01635 109 --------------------------------------------------------FVGRLAPEKGLDDLIEAFALLKER 132 (229)
T ss_pred --------------------------------------------------------EEEeecccCCHHHHHHHHHHHHHh
Confidence 889999999999999999999988
Q ss_pred CCCeEEEEEeCCcchhHHHH----h--cCCeEEcCCC-ChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEec
Q 044542 316 HPGVYLLVAGTGPWGRRYAE----L--GQNVKVLGAL-EAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTP 388 (465)
Q Consensus 316 ~~~~~l~ivG~g~~~~~~~~----l--~~~V~~~g~v-~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s 388 (465)
+++++++++|.+......++ + .++|.++|++ +.+++..+++.||++++|+.. |++|++++|||++|+|+|++
T Consensus 133 ~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~-e~~~~~~~Eam~~g~pvi~s 211 (229)
T cd01635 133 GPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLR-EGFGLVVLEAMACGLPVIAT 211 (229)
T ss_pred CCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccc-cCcChHHHHHHhCCCCEEEc
Confidence 88999999999877655442 2 2899999998 445566666669999999975 89999999999999999999
Q ss_pred CCCCcceeeeeeCCceEEe
Q 044542 389 NYPSIVRTVVVNEELGYTF 407 (465)
Q Consensus 389 ~~gg~~~e~v~~~~~G~l~ 407 (465)
+.++.. |++.++++|+++
T Consensus 212 ~~~~~~-e~i~~~~~g~~~ 229 (229)
T cd01635 212 DVGGPP-EIVEDGLTGLLV 229 (229)
T ss_pred CCCCcc-eEEECCCceEEC
Confidence 999998 888888899874
No 84
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.90 E-value=1.3e-22 Score=195.93 Aligned_cols=332 Identities=14% Similarity=0.110 Sum_probs=207.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC-CcEEEEEeCCCCCCCCCccc-C-C-cceEEEeecCCC-c-------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAAR-GHEIHVFTAPSDRKPHNDVH-Q-G-NLHVHFAANDHG-S------- 147 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~-~-~-~~~v~~~~~~~~-~------- 147 (465)
|||++++..-| --..+..+.++|.+. +.++.++....+.....++. . . ...+.......+ .
T Consensus 1 ~~i~~~~gtr~-------~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 73 (365)
T TIGR00236 1 LKVSIVLGTRP-------EAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSN 73 (365)
T ss_pred CeEEEEEecCH-------HHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHH
Confidence 69999986532 123477888999876 66766666655432111211 1 1 112222211111 0
Q ss_pred -----cccCCCCCCcEEEecCCc---hh---HHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhh
Q 044542 148 -----VNLNNDGAFDYVHTESVS---LP---HWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAM 216 (465)
Q Consensus 148 -----~~~~~~~~~DiI~~~~~~---~~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (465)
....++.+||+||+|+.. +. .....++| ++..-+|.... +.+ .+ +....
T Consensus 74 ~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ip-v~h~~~g~~s~----~~~-------~~--------~~~~~ 133 (365)
T TIGR00236 74 MLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIP-VGHVEAGLRTG----DRY-------SP--------MPEEI 133 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCC-EEEEeCCCCcC----CCC-------CC--------CccHH
Confidence 011178889999999642 21 22334678 66554442100 000 00 00000
Q ss_pred HHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCC-CCCCccCCcccCcccccccCCCCCCcEEEEEeec
Q 044542 217 PRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGV-DETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGR 295 (465)
Q Consensus 217 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngv-d~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Gr 295 (465)
.+. ...+.+|.++++|+..++.+.+ .|++++++.+++||+ |.............++++++. +++++++..+|
T Consensus 134 ~r~----~~~~~ad~~~~~s~~~~~~l~~-~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~--~~~~vl~~~hr 206 (365)
T TIGR00236 134 NRQ----LTGHIADLHFAPTEQAKDNLLR-ENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGE--DKRYILLTLHR 206 (365)
T ss_pred HHH----HHHHHHHhccCCCHHHHHHHHH-cCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcCC--CCCEEEEecCc
Confidence 010 1123478999999999999987 599999999999996 432221111112345566652 23356544445
Q ss_pred cc-cccCHHHHHHHHHHhhhcCCCeEEEEEeCCc--chhHHHH-hc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCC
Q 044542 296 LV-RDKGHPLLYEAFSSITRDHPGVYLLVAGTGP--WGRRYAE-LG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQ 369 (465)
Q Consensus 296 l~-~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~-l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~e 369 (465)
.. ..||++.+++|+.++.+++|+++++++|.+. ..+.+.+ ++ ++|+++|.++..++..+++.+|+++.+|
T Consensus 207 ~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S---- 282 (365)
T TIGR00236 207 RENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS---- 282 (365)
T ss_pred hhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC----
Confidence 42 3589999999999998777889988886432 2222222 33 6899999999999999999999998876
Q ss_pred CCcHHHHHHHHcCCeEEec-CCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHH
Q 044542 370 GLDLTLIEAMHCGRTVLTP-NYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATK 448 (465)
Q Consensus 370 g~~~~~~EAma~G~PvI~s-~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~ 448 (465)
|..++|||++|+|||++ +.++.. +++.++ .+.+++.|++++++++.+++++ ++.+++++++...+.. ..++++
T Consensus 283 --g~~~~EA~a~g~PvI~~~~~~~~~-e~~~~g-~~~lv~~d~~~i~~ai~~ll~~-~~~~~~~~~~~~~~g~-~~a~~r 356 (365)
T TIGR00236 283 --GGVQEEAPSLGKPVLVLRDTTERP-ETVEAG-TNKLVGTDKENITKAAKRLLTD-PDEYKKMSNASNPYGD-GEASER 356 (365)
T ss_pred --hhHHHHHHHcCCCEEECCCCCCCh-HHHhcC-ceEEeCCCHHHHHHHHHHHHhC-hHHHHHhhhcCCCCcC-chHHHH
Confidence 34689999999999996 667766 666655 5666755999999999999998 7888888766533332 245566
Q ss_pred HHHHHHH
Q 044542 449 MASAYER 455 (465)
Q Consensus 449 ~~~~~~~ 455 (465)
+++.+.+
T Consensus 357 i~~~l~~ 363 (365)
T TIGR00236 357 IVEELLN 363 (365)
T ss_pred HHHHHHh
Confidence 6555544
No 85
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.90 E-value=9.5e-23 Score=211.87 Aligned_cols=273 Identities=18% Similarity=0.171 Sum_probs=191.6
Q ss_pred CcEEEecCCc---hhHHhhhcCC--cEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccC
Q 044542 156 FDYVHTESVS---LPHWRAKMVP--NVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYN 230 (465)
Q Consensus 156 ~DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 230 (465)
-|+|.+|++. ++..+....| ++.+.+|-.++. .+.+..+. +-..+ ..-+-.+|
T Consensus 134 ~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~---~~~f~~lp----------------~~~~l---l~~ll~~D 191 (726)
T PRK14501 134 GDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPS---FEVFRLLP----------------WREEI---LEGLLGAD 191 (726)
T ss_pred CCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCC---hHHHhhCC----------------ChHHH---HHHHhcCC
Confidence 3899999874 3444444333 267777765432 22222111 00111 13456788
Q ss_pred EEEEeChhHHHHHHHH----hCC-----------CCCCEEEecCCCCCCCccCCcccC------cccccccCCCCCCcEE
Q 044542 231 QHICISNSAAEVLVKI----YQL-----------PQRNVHVILNGVDETKFVHDPEAG------VRFPEKLGVPANVSLV 289 (465)
Q Consensus 231 ~ii~~S~~~~~~~~~~----~~~-----------~~~ki~vi~ngvd~~~~~~~~~~~------~~~r~~~g~~~~~~~~ 289 (465)
.|-+.+....+.+.+. ++. ...++.++|||||++.|.+..... ..+|+.+ .+. .+
T Consensus 192 ligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~-~~ 267 (726)
T PRK14501 192 LIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGR-KI 267 (726)
T ss_pred eEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---CCC-EE
Confidence 8888777766655442 221 123689999999999987643211 1133332 233 57
Q ss_pred EEEeeccccccCHHHHHHHHHHhhhcCCC----eEEEEEeCC-----cc----hhHHHHhc-------------CCeEEc
Q 044542 290 MGVAGRLVRDKGHPLLYEAFSSITRDHPG----VYLLVAGTG-----PW----GRRYAELG-------------QNVKVL 343 (465)
Q Consensus 290 l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g-----~~----~~~~~~l~-------------~~V~~~ 343 (465)
++++||+.+.||+..+++|++++.+++|+ ++|+++|.+ +. ++.++++. +.+.+.
T Consensus 268 il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~ 347 (726)
T PRK14501 268 ILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFY 347 (726)
T ss_pred EEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEe
Confidence 77999999999999999999999888875 678888732 21 12222221 134577
Q ss_pred CCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcC-----CeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHH
Q 044542 344 GALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCG-----RTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEA 417 (465)
Q Consensus 344 g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G-----~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~ 417 (465)
|.++.+++..+|+.||++++||.+ ||+|++++|||+|| .||++...|+.. ++. .|++++| |+++++++
T Consensus 348 ~~~~~~~l~~ly~~aDv~v~~S~~-EG~~lv~~Eama~~~~~~g~~vls~~~G~~~-~l~----~~llv~P~d~~~la~a 421 (726)
T PRK14501 348 RSLPFEELVALYRAADVALVTPLR-DGMNLVAKEYVASRTDGDGVLILSEMAGAAA-ELA----EALLVNPNDIEGIAAA 421 (726)
T ss_pred CCCCHHHHHHHHHhccEEEecccc-cccCcccceEEEEcCCCCceEEEecccchhH-HhC----cCeEECCCCHHHHHHH
Confidence 899999999999999999999987 99999999999994 466776677765 553 4899999 99999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhc
Q 044542 418 LELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRMK 461 (465)
Q Consensus 418 i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 461 (465)
|.+++.++++.+.+..+++++++.+ |||+.+++++++.|+++.
T Consensus 422 i~~~l~~~~~e~~~r~~~~~~~v~~-~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 422 IKRALEMPEEEQRERMQAMQERLRR-YDVHKWASDFLDELREAA 464 (726)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHH
Confidence 9999998555666666788999865 999999999999998874
No 86
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.88 E-value=1e-21 Score=191.05 Aligned_cols=307 Identities=14% Similarity=0.060 Sum_probs=194.1
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCcc----------
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSV---------- 148 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------- 148 (465)
+|||++++. ..||.-.-.. ++++|++.++++.++................ ..+..... +.+
T Consensus 1 ~~ki~i~~G------gt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~-g~~~~~~~~~~~~ 71 (380)
T PRK00025 1 PLRIAIVAG------EVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCESLF-DMEELAVM-GLVEVLPRLPRLL 71 (380)
T ss_pred CceEEEEec------CcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCcccc-CHHHhhhc-cHHHHHHHHHHHH
Confidence 479998875 4567554444 9999999888888887554321111111110 00000000 100
Q ss_pred -------ccCCCCCCcEEEecCCc-hhH-----HhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhh
Q 044542 149 -------NLNNDGAFDYVHTESVS-LPH-----WRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEA 215 (465)
Q Consensus 149 -------~~~~~~~~DiI~~~~~~-~~~-----~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (465)
...++.+||+||++++. ... ....++| ++...++.... +..+.
T Consensus 72 ~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip-~i~~~~~~~~~-----------------------~~~~~ 127 (380)
T PRK00025 72 KIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIP-TIHYVSPSVWA-----------------------WRQGR 127 (380)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCC-EEEEeCCchhh-----------------------cCchH
Confidence 01168899999997642 111 1224677 66654431000 01111
Q ss_pred hHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeec
Q 044542 216 MPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGR 295 (465)
Q Consensus 216 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Gr 295 (465)
.. ...+.+|.+++.|+..++.+.+ +|+ ++.++.|++..... ....+...+++++++++++.++++.|.
T Consensus 128 ~~------~~~~~~d~i~~~~~~~~~~~~~-~g~---~~~~~G~p~~~~~~--~~~~~~~~~~~l~~~~~~~~il~~~gs 195 (380)
T PRK00025 128 AF------KIAKATDHVLALFPFEAAFYDK-LGV---PVTFVGHPLADAIP--LLPDRAAARARLGLDPDARVLALLPGS 195 (380)
T ss_pred HH------HHHHHHhhheeCCccCHHHHHh-cCC---CeEEECcCHHHhcc--cccChHHHHHHcCCCCCCCEEEEECCC
Confidence 11 2356789999999999988876 554 36777776643221 111234567788888776555555563
Q ss_pred -cccc-cCHHHHHHHHHHhhhcCCCeEEEEEeC-CcchhHHHHh-----cCCeEEcCCCChhHHHHHHHhcCeEEecccC
Q 044542 296 -LVRD-KGHPLLYEAFSSITRDHPGVYLLVAGT-GPWGRRYAEL-----GQNVKVLGALEAHQLSEFYNALDVFVNPTLR 367 (465)
Q Consensus 296 -l~~~-Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~~~~~~~~l-----~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~ 367 (465)
.... ++++.+++|++.+.+++|+++++++|. +...+.++++ +-++.+. .+++..+|+.||+++.+|
T Consensus 196 r~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~aDl~v~~s-- 269 (380)
T PRK00025 196 RGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLL----DGQKREAMAAADAALAAS-- 269 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEE----cccHHHHHHhCCEEEECc--
Confidence 3333 457899999999988778999999976 4444444432 2234443 258999999999999976
Q ss_pred CCCCcHHHHHHHHcCCeEEec-----------------CCCCcceeeeeeCC--ceEEeCC-CHHHHHHHHHHHHhCChH
Q 044542 368 PQGLDLTLIEAMHCGRTVLTP-----------------NYPSIVRTVVVNEE--LGYTFSP-NVKSFVEALELVIRDGPK 427 (465)
Q Consensus 368 ~eg~~~~~~EAma~G~PvI~s-----------------~~gg~~~e~v~~~~--~G~l~~~-d~~~la~~i~~ll~~~~~ 427 (465)
|.+++|||++|+|+|++ +.++++ +++.++. .+++.+. |++++++++.++++| ++
T Consensus 270 ----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~-~~ 343 (380)
T PRK00025 270 ----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLP-NLLAGRELVPELLQEEATPEKLARALLPLLAD-GA 343 (380)
T ss_pred ----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehH-HHhcCCCcchhhcCCCCCHHHHHHHHHHHhcC-HH
Confidence 56888999999999977 444555 5555543 4466666 999999999999999 89
Q ss_pred HHHHHHHHHHHHHHh
Q 044542 428 VLQRKGLACKEHALS 442 (465)
Q Consensus 428 ~~~~~~~~~~~~~~~ 442 (465)
.+++|++++.+..+.
T Consensus 344 ~~~~~~~~~~~~~~~ 358 (380)
T PRK00025 344 RRQALLEGFTELHQQ 358 (380)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999887555444
No 87
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.87 E-value=1.3e-20 Score=182.27 Aligned_cols=306 Identities=15% Similarity=0.087 Sum_probs=195.6
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC-CcEEEEEeCCCCCCCCC--c----ccCCcceEEEeecCCC--c----
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAAR-GHEIHVFTAPSDRKPHN--D----VHQGNLHVHFAANDHG--S---- 147 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~--~----~~~~~~~v~~~~~~~~--~---- 147 (465)
||++++..-| + -..+.-+.++|++. |+++.++.......... . .......+........ .
T Consensus 1 ~i~~~~gtr~------~-~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 73 (363)
T cd03786 1 KILVVTGTRP------E-YIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQT 73 (363)
T ss_pred CEEEEEecCH------H-HHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHH
Confidence 6888876432 1 22467788999887 89999877764433221 1 1111222222221111 0
Q ss_pred -------cccCCCCCCcEEEecCCch---h---HHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhh
Q 044542 148 -------VNLNNDGAFDYVHTESVSL---P---HWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQE 214 (465)
Q Consensus 148 -------~~~~~~~~~DiI~~~~~~~---~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (465)
....++.+||+||+|+... . .....++| ++...+|.... + .. ....
T Consensus 74 ~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iP-vv~~~~g~~s~----~-------~~---------~~~~ 132 (363)
T cd03786 74 AGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIP-VAHVEAGLRSF----D-------RG---------MPDE 132 (363)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCC-EEEEecccccC----C-------CC---------CCch
Confidence 0111566999999996431 1 11234678 77666653210 0 00 0000
Q ss_pred hhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCC-CCCCccCCcccCcccccccCCCCCCcEEEEEe
Q 044542 215 AMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGV-DETKFVHDPEAGVRFPEKLGVPANVSLVMGVA 293 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngv-d~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~ 293 (465)
.... ...+.+|.+++.|+..++.+.+ +|++++++.+++|++ |...+..........+++++++++. +++++.
T Consensus 133 ~~r~-----~~~~~ad~~~~~s~~~~~~l~~-~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~vlv~~ 205 (363)
T cd03786 133 ENRH-----AIDKLSDLHFAPTEEARRNLLQ-EGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKK-YILVTL 205 (363)
T ss_pred HHHH-----HHHHHhhhccCCCHHHHHHHHH-cCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCC-EEEEEe
Confidence 0111 2345679999999999999987 699999999999995 5433222222112234567776544 777788
Q ss_pred ecccc---ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHH----h---cCCeEEcCCCChhHHHHHHHhcCeEEe
Q 044542 294 GRLVR---DKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAE----L---GQNVKVLGALEAHQLSEFYNALDVFVN 363 (465)
Q Consensus 294 Grl~~---~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~----l---~~~V~~~g~v~~~~~~~~~~~aDv~v~ 363 (465)
|+... .|+++.+++|++.+.+. ++.+++.|.++..+.+++ + .++|.|.|..+.+++..+|+.||++|.
T Consensus 206 ~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~ 283 (363)
T cd03786 206 HRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLT 283 (363)
T ss_pred CCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEE
Confidence 88764 79999999999998653 577777777665554443 3 368999998888999999999999999
Q ss_pred cccCCCCCcHHHHHHHHcCCeEEecCCCC-cceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHH
Q 044542 364 PTLRPQGLDLTLIEAMHCGRTVLTPNYPS-IVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRK 432 (465)
Q Consensus 364 ps~~~eg~~~~~~EAma~G~PvI~s~~gg-~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~ 432 (465)
+|. | .+.|||++|+|+|+++..+ .+ +.+.++ .+..+..|+++++++|.+++++ ++.+..|
T Consensus 284 ~Sg-----g-i~~Ea~~~g~PvI~~~~~~~~~-~~~~~g-~~~~~~~~~~~i~~~i~~ll~~-~~~~~~~ 344 (363)
T cd03786 284 DSG-----G-IQEEASFLGVPVLNLRDRTERP-ETVESG-TNVLVGTDPEAILAAIEKLLSD-EFAYSLM 344 (363)
T ss_pred cCc-----c-HHhhhhhcCCCEEeeCCCCccc-hhhhee-eEEecCCCHHHHHHHHHHHhcC-chhhhcC
Confidence 872 3 5799999999999987533 33 444333 3333333799999999999998 6665555
No 88
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.86 E-value=6.3e-20 Score=178.07 Aligned_cols=196 Identities=15% Similarity=0.127 Sum_probs=160.8
Q ss_pred EEEecCCCCCCCccCCccc------CcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCC----eEEEE
Q 044542 254 VHVILNGVDETKFVHDPEA------GVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPG----VYLLV 323 (465)
Q Consensus 254 i~vi~ngvd~~~~~~~~~~------~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~----~~l~i 323 (465)
+.++|.|||++.|...... ...+|++++ +. .+|+.++|+...||+...++|++++.+++|+ +.|++
T Consensus 250 v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~---~~-kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvq 325 (487)
T TIGR02398 250 LGAHPVGTDPERIRSALAAASIREMMERIRSELA---GV-KLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVT 325 (487)
T ss_pred EEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC---Cc-eEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEE
Confidence 7899999999988653211 234677776 33 5666999999999999999999999998885 68998
Q ss_pred EeCCc---------chhHHHHhc-------------CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHc
Q 044542 324 AGTGP---------WGRRYAELG-------------QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHC 381 (465)
Q Consensus 324 vG~g~---------~~~~~~~l~-------------~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~ 381 (465)
+|.+. .+++++++. +-+.+.+.++.+++..+|+.|||++.+|.+ ||++++..||++|
T Consensus 326 i~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lr-DGmNLVa~Eyva~ 404 (487)
T TIGR02398 326 ACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLR-DGLNLVAKEYVAA 404 (487)
T ss_pred EeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccc-cccCcchhhHHhh
Confidence 88642 122333321 446888999999999999999999999997 9999999999999
Q ss_pred CC----eEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 044542 382 GR----TVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERF 456 (465)
Q Consensus 382 G~----PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 456 (465)
+. |+|.|..+|.. +.+ ..+++++| |+++++++|.+++.++.+++++..++.++++.+ ++....++.+++-
T Consensus 405 ~~~~~GvLILSefaGaa-~~l---~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-~d~~~W~~~fl~~ 479 (487)
T TIGR02398 405 QGLLDGVLVLSEFAGAA-VEL---KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNY-YDVQRWADEFLAA 479 (487)
T ss_pred hcCCCCCEEEeccccch-hhc---CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHH
Confidence 98 99999999988 333 35899999 999999999999999877777777888888877 7999999988876
Q ss_pred HHH
Q 044542 457 FLR 459 (465)
Q Consensus 457 ~~~ 459 (465)
++.
T Consensus 480 l~~ 482 (487)
T TIGR02398 480 VSP 482 (487)
T ss_pred hhh
Confidence 543
No 89
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=5.2e-19 Score=169.57 Aligned_cols=221 Identities=30% Similarity=0.498 Sum_probs=179.3
Q ss_pred ccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCC-cEEEEEeeccccccCHHHHH
Q 044542 228 SYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANV-SLVMGVAGRLVRDKGHPLLY 306 (465)
Q Consensus 228 ~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~-~~~l~~~Grl~~~Kg~~~ll 306 (465)
..+.++..++.....+...+ . ..++.+++++++...+... ..++..+. ...++++|++.+.||++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i 218 (381)
T COG0438 150 LADRVIAVSPALKELLEALG-V-PNKIVVIPNGIDTEKFAPA---------RIGLLPEGGKFVVLYVGRLDPEKGLDLLI 218 (381)
T ss_pred cccEEEECCHHHHHHHHHhC-C-CCCceEecCCcCHHHcCcc---------ccCCCcccCceEEEEeeccChhcCHHHHH
Confidence 47888888888766666542 2 3479999999998876542 01111222 26777999999999999999
Q ss_pred HHHHHhhhcCCCeEEEEEeCCcch-h----HHHHhc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHH
Q 044542 307 EAFSSITRDHPGVYLLVAGTGPWG-R----RYAELG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAM 379 (465)
Q Consensus 307 ~a~~~l~~~~~~~~l~ivG~g~~~-~----~~~~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAm 379 (465)
+++..+.+..+++.+.++|.++.. + ..+++. ++|.+.|.++.+++..+++.+|++++||.. |++|++++|||
T Consensus 219 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~-e~~~~~~~Ea~ 297 (381)
T COG0438 219 EAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLS-EGFGLVLLEAM 297 (381)
T ss_pred HHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEecccc-ccchHHHHHHH
Confidence 999999887767899999988752 2 223333 789999999888888999999999999976 99999999999
Q ss_pred HcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 044542 380 HCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFL 458 (465)
Q Consensus 380 a~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 458 (465)
++|+|||+++.++.. +++.++..|+++.+ +++++++++..++++ ++.++.+.+.+++.+.+.|+|+.+++++.+++.
T Consensus 298 a~g~pvi~~~~~~~~-e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (381)
T COG0438 298 AAGTPVIASDVGGIP-EVVEDGETGLLVPPGDVEELADALEQLLED-PELREELGEAARERVEEEFSWERIAEQLLELYE 375 (381)
T ss_pred hcCCcEEECCCCChH-HHhcCCCceEecCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999887 78777767887776 799999999999999 677888887677777678999999999999998
Q ss_pred HhcC
Q 044542 459 RMKN 462 (465)
Q Consensus 459 ~~~~ 462 (465)
....
T Consensus 376 ~~~~ 379 (381)
T COG0438 376 ELLA 379 (381)
T ss_pred HHHh
Confidence 8754
No 90
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.6e-17 Score=147.15 Aligned_cols=334 Identities=15% Similarity=0.211 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCc--------ccc---------------CCCCC
Q 044542 99 ERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGS--------VNL---------------NNDGA 155 (465)
Q Consensus 99 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~---------------~~~~~ 155 (465)
.-++..-|..|++.|++|.++..........-.. .+.++++...... ... .....
T Consensus 26 SPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~--hprI~ih~m~~l~~~~~~p~~~~l~lKvf~Qfl~Ll~aL~~~~~ 103 (444)
T KOG2941|consen 26 SPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN--HPRIRIHGMPNLPFLQGGPRVLFLPLKVFWQFLSLLWALFVLRP 103 (444)
T ss_pred ChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc--CCceEEEeCCCCcccCCCchhhhhHHHHHHHHHHHHHHHHhccC
Confidence 3345667788899999999999887644333223 3333333222110 000 05678
Q ss_pred CcEEEecCCc-hhH-----Hh--hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhc
Q 044542 156 FDYVHTESVS-LPH-----WR--AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFS 227 (465)
Q Consensus 156 ~DiI~~~~~~-~~~-----~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (465)
+|++.+.++. ++. +. -.+.+ ++..||+..+. ..-.+ ... .. ..+ -.+.++.++ .+-+
T Consensus 104 ~~~ilvQNPP~iPtliv~~~~~~l~~~K-fiIDWHNy~Ys-l~l~~----~~g--~~-h~l-V~l~~~~E~-----~fgk 168 (444)
T KOG2941|consen 104 PDIILVQNPPSIPTLIVCVLYSILTGAK-FIIDWHNYGYS-LQLKL----KLG--FQ-HPL-VRLVRWLEK-----YFGK 168 (444)
T ss_pred CcEEEEeCCCCCchHHHHHHHHHHhcce-EEEEehhhHHH-HHHHh----hcC--CC-Cch-HHHHHHHHH-----Hhhc
Confidence 9999998752 211 11 12334 99999997654 11111 000 00 001 133344443 4558
Q ss_pred ccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCC-----CCCC----ccCCcc---------------cCcccccccC--
Q 044542 228 SYNQHICISNSAAEVLVKIYQLPQRNVHVILNGV-----DETK----FVHDPE---------------AGVRFPEKLG-- 281 (465)
Q Consensus 228 ~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngv-----d~~~----~~~~~~---------------~~~~~r~~~g-- 281 (465)
.|+.-+|+++.+++.+.+.+|+. +..|++.-- +.+. |.+-.. +...+.++..
T Consensus 169 ~a~~nLcVT~AMr~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~ 246 (444)
T KOG2941|consen 169 LADYNLCVTKAMREDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASG 246 (444)
T ss_pred ccccchhhHHHHHHHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccc
Confidence 89999999999999999999974 344443211 1111 111000 0111122221
Q ss_pred ---CCCCCcEEEEEeeccccccCHHHHHHHHHHhhh-------cCCCeEEEEEeCCcchhHHHHhc-----CCeEE-cCC
Q 044542 282 ---VPANVSLVMGVAGRLVRDKGHPLLYEAFSSITR-------DHPGVYLLVAGTGPWGRRYAELG-----QNVKV-LGA 345 (465)
Q Consensus 282 ---~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~-------~~~~~~l~ivG~g~~~~~~~~l~-----~~V~~-~g~ 345 (465)
...+.+.+++......+..++..+++|+....+ ..|.+-.+|.|.|+.++.+.+.. .+|.+ ..+
T Consensus 247 ~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpW 326 (444)
T KOG2941|consen 247 DVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPW 326 (444)
T ss_pred hhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeecc
Confidence 122345677788888999999999999984422 23788899999999987665432 56655 678
Q ss_pred CChhHHHHHHHhcCeEEe--cccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHh
Q 044542 346 LEAHQLSEFYNALDVFVN--PTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIR 423 (465)
Q Consensus 346 v~~~~~~~~~~~aDv~v~--ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~ 423 (465)
+..|+.+.+++.||..|. +|..+-..|+++++...||+||++-+...+. |+|.+++||++|. |.++|++++..+.+
T Consensus 327 L~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~-ELVkh~eNGlvF~-Ds~eLa~ql~~lf~ 404 (444)
T KOG2941|consen 327 LEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLD-ELVKHGENGLVFE-DSEELAEQLQMLFK 404 (444)
T ss_pred cccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHH-HHHhcCCCceEec-cHHHHHHHHHHHHh
Confidence 888999999999998765 5544567899999999999999999999987 9999999999999 99999999999999
Q ss_pred C---ChHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 044542 424 D---GPKVLQRKGLACKEHALSMFTATKMASAYER 455 (465)
Q Consensus 424 ~---~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 455 (465)
+ +...+.++.+++++..+ ..|+..-++...
T Consensus 405 ~fp~~a~~l~~lkkn~~e~~e--~RW~~~W~~~~~ 437 (444)
T KOG2941|consen 405 NFPDNADELNQLKKNLREEQE--LRWDESWERTAL 437 (444)
T ss_pred cCCCCHHHHHHHHHhhHHHHh--hhHHHHHHHhhh
Confidence 2 26788888888888733 467665555443
No 91
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.80 E-value=2.5e-19 Score=147.31 Aligned_cols=131 Identities=30% Similarity=0.485 Sum_probs=99.6
Q ss_pred EEEEEeeccccccCHHHHHH-HHHHhhhcCCCeEEEEEeCCcchhHHHHh-cCCeEEcCCCChhHHHHHHHhcCeEEecc
Q 044542 288 LVMGVAGRLVRDKGHPLLYE-AFSSITRDHPGVYLLVAGTGPWGRRYAEL-GQNVKVLGALEAHQLSEFYNALDVFVNPT 365 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~ll~-a~~~l~~~~~~~~l~ivG~g~~~~~~~~l-~~~V~~~g~v~~~~~~~~~~~aDv~v~ps 365 (465)
+.++++|++.+.|+++.+++ ++.++.+++|+++|+|+|.++. +++++ .++|+++|++ +++.++++.||+++.|+
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~~~~~v~~~g~~--~e~~~~l~~~dv~l~p~ 78 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRLRRPNVRFHGFV--EELPEILAAADVGLIPS 78 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCHHHCTEEEE-S---HHHHHHHHC-SEEEE-B
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHhcCCCEEEcCCH--HHHHHHHHhCCEEEEEe
Confidence 67889999999999999999 9999999999999999999765 35555 5899999999 68999999999999998
Q ss_pred cCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhC
Q 044542 366 LRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRD 424 (465)
Q Consensus 366 ~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~ 424 (465)
...+++|++++|||++|+|||+++. +.. +++...+.|.++..|+++++++|.++++|
T Consensus 79 ~~~~~~~~k~~e~~~~G~pvi~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 79 RFNEGFPNKLLEAMAAGKPVIASDN-GAE-GIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp SS-SCC-HHHHHHHCTT--EEEEHH-HCH-CHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred eCCCcCcHHHHHHHHhCCCEEECCc-chh-hheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 6558999999999999999999998 454 55555667777744999999999999875
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.79 E-value=1.2e-17 Score=172.45 Aligned_cols=229 Identities=17% Similarity=0.199 Sum_probs=171.2
Q ss_pred HhhcccCEEEEeChhHHHHHHHH----hCCC-----------CCCEEEecCCCCCCCccCCccc------CcccccccCC
Q 044542 224 RFFSSYNQHICISNSAAEVLVKI----YQLP-----------QRNVHVILNGVDETKFVHDPEA------GVRFPEKLGV 282 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~----~~~~-----------~~ki~vi~ngvd~~~~~~~~~~------~~~~r~~~g~ 282 (465)
+-+-.||.|=+.+......+.+. .|.. ..++.+.|-|||.+.|...... ...++++++
T Consensus 283 ~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~- 361 (934)
T PLN03064 283 RSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA- 361 (934)
T ss_pred HHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC-
Confidence 34557899988887777766542 2321 1236678999999888653221 124566654
Q ss_pred CCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeE--EEEE-------eCCcchhH----HHHhc------------
Q 044542 283 PANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVY--LLVA-------GTGPWGRR----YAELG------------ 337 (465)
Q Consensus 283 ~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~--l~iv-------G~g~~~~~----~~~l~------------ 337 (465)
+. .+|+.++|+...||+...++|++++.+++|+++ ++++ |+++..+. +.++.
T Consensus 362 --g~-kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w 438 (934)
T PLN03064 362 --GR-KVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTA 438 (934)
T ss_pred --Cc-eEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence 33 566699999999999999999999988888754 4554 33333222 22211
Q ss_pred CCeEE-cCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC----eEEecCCCCcceeeeeeCCceEEeCC-CH
Q 044542 338 QNVKV-LGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR----TVLTPNYPSIVRTVVVNEELGYTFSP-NV 411 (465)
Q Consensus 338 ~~V~~-~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~----PvI~s~~gg~~~e~v~~~~~G~l~~~-d~ 411 (465)
..|++ ...++.+++..+|+.|||+++||.+ ||++++..|||+|+. ++|.|...|.. +.+ +..+++++| |+
T Consensus 439 ~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslr-DGmNLva~Eyva~~~~~~GvLILSEfaGaa-~~L--~~~AllVNP~D~ 514 (934)
T PLN03064 439 VPIHHLDRSLDFHALCALYAVTDVALVTSLR-DGMNLVSYEFVACQDSKKGVLILSEFAGAA-QSL--GAGAILVNPWNI 514 (934)
T ss_pred ceEEEeccCCCHHHHHHHHHhCCEEEeCccc-cccCchHHHHHHhhcCCCCCeEEeCCCchH-HHh--CCceEEECCCCH
Confidence 12443 4458999999999999999999997 999999999999954 45558888887 444 446899999 99
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhc
Q 044542 412 KSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRMK 461 (465)
Q Consensus 412 ~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 461 (465)
++++++|.+++..+++++++..++.++++.. +++..+++.+++-+++..
T Consensus 515 ~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~-~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 515 TEVAASIAQALNMPEEEREKRHRHNFMHVTT-HTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhccc-CCHHHHHHHHHHHHHHHH
Confidence 9999999999997688899999999999987 799999999888776653
No 93
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.76 E-value=6.8e-17 Score=159.91 Aligned_cols=210 Identities=11% Similarity=0.089 Sum_probs=167.1
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCC--CCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEee--ccccc
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLP--QRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAG--RLVRD 299 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~--~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~G--rl~~~ 299 (465)
..+.++|.+|+.++...+.+.++++-. ..++..||.+.- ... + |.....+..+++++ |+ +.
T Consensus 268 ~~~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~~~-~~~-~------------~~s~r~~~~~I~v~idrL-~e 332 (519)
T TIGR03713 268 ESLSRADLIIVDREDIERLLEENYRENYVEFDISRITPFDT-RLR-L------------GQSQQLYETEIGFWIDGL-SD 332 (519)
T ss_pred hChhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCccce-EEe-c------------ChhhcccceEEEEEcCCC-Ch
Confidence 345688999999988888887766411 134566775433 111 1 11112223455778 99 99
Q ss_pred cCHHHHHHHHHHhhhcCCCeEEEEEeCCcch---hHH----HHh--c-----------------------------CCeE
Q 044542 300 KGHPLLYEAFSSITRDHPGVYLLVAGTGPWG---RRY----AEL--G-----------------------------QNVK 341 (465)
Q Consensus 300 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~---~~~----~~l--~-----------------------------~~V~ 341 (465)
|.++.+++|+.++.+++|+++|.+.|.+.+. +.+ +++ . ..|.
T Consensus 333 k~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 412 (519)
T TIGR03713 333 EELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIA 412 (519)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEE
Confidence 9999999999999999999999999987543 222 222 2 5899
Q ss_pred EcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHH
Q 044542 342 VLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELV 421 (465)
Q Consensus 342 ~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~l 421 (465)
|.|+.+..++.+.|..+.++|.+|.. ||++ +.+||+++|+|+| +.|. . ++|.++.+|+++. |..+|++++..+
T Consensus 413 f~gy~~e~dl~~~~~~arl~id~s~~-eg~~-~~ieAiS~GiPqI--nyg~-~-~~V~d~~NG~li~-d~~~l~~al~~~ 485 (519)
T TIGR03713 413 FTTLTNEEDLISALDKLRLIIDLSKE-PDLY-TQISGISAGIPQI--NKVE-T-DYVEHNKNGYIID-DISELLKALDYY 485 (519)
T ss_pred EEecCCHHHHHHHHhhheEEEECCCC-CChH-HHHHHHHcCCCee--ecCC-c-eeeEcCCCcEEeC-CHHHHHHHHHHH
Confidence 99999877999999999999999974 9999 9999999999999 4443 4 8999999999996 999999999999
Q ss_pred HhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 044542 422 IRDGPKVLQRKGLACKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
+.+ ++.++++...+.+.+.+ ||.+++.++|.+++
T Consensus 486 L~~-~~~wn~~~~~sy~~~~~-yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 486 LDN-LKNWNYSLAYSIKLIDD-YSSENIIERLNELI 519 (519)
T ss_pred HhC-HHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhC
Confidence 999 89999999999999966 99999999998753
No 94
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.70 E-value=3.5e-15 Score=149.53 Aligned_cols=231 Identities=17% Similarity=0.195 Sum_probs=169.5
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhC----C-C--CCCEEEecCCCCCCCccCCccc------------------------
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQ----L-P--QRNVHVILNGVDETKFVHDPEA------------------------ 272 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~----~-~--~~ki~vi~ngvd~~~~~~~~~~------------------------ 272 (465)
..+..++.+.+||+...+..++.++ . + ..++.-|-||||...+.+....
T Consensus 258 lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~~ 337 (601)
T TIGR02094 258 LALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLYERYLGENWRELLADEELWEAI 337 (601)
T ss_pred HHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCHHHHHHHHHhCCcchhccchhhhhhhhc
Confidence 4567889999999988874444232 1 1 3358889999999877653210
Q ss_pred ---------------Cccccc---------------------ccC--CCCCCcEEEEEeeccccccCHHHHHHHHHHhhh
Q 044542 273 ---------------GVRFPE---------------------KLG--VPANVSLVMGVAGRLVRDKGHPLLYEAFSSITR 314 (465)
Q Consensus 273 ---------------~~~~r~---------------------~~g--~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~ 314 (465)
+..+.+ ..| +.++ .+++++++|+..+||++++++++.++.+
T Consensus 338 ~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd-~~~ig~v~Rl~~yKr~dLil~~i~~l~~ 416 (601)
T TIGR02094 338 DDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPD-VLTIGFARRFATYKRADLIFRDLERLAR 416 (601)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCC-CcEEEEEEcchhhhhHHHHHHHHHHHHH
Confidence 001111 112 2233 3788899999999999999999888864
Q ss_pred --cC--CCeEEEEEeCCcc--------hhHHHHhc------CCeEEcCCCChhHHHHHHHhcCeEEe-cccCCCCCcHHH
Q 044542 315 --DH--PGVYLLVAGTGPW--------GRRYAELG------QNVKVLGALEAHQLSEFYNALDVFVN-PTLRPQGLDLTL 375 (465)
Q Consensus 315 --~~--~~~~l~ivG~g~~--------~~~~~~l~------~~V~~~g~v~~~~~~~~~~~aDv~v~-ps~~~eg~~~~~ 375 (465)
.. .+++++++|++.. .+.+.+++ ++|.|+...+.+-...+++.||++++ ||.-.|.+|++-
T Consensus 417 i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsq 496 (601)
T TIGR02094 417 ILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSG 496 (601)
T ss_pred HhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHH
Confidence 21 3699999998752 22333332 68999888876777778899999999 987239999999
Q ss_pred HHHHHcCCeEEecCCCCcceeeeeeCCceEEeC------------C-CHHHHHHHHHHHHh----CC-----hHHHHHHH
Q 044542 376 IEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFS------------P-NVKSFVEALELVIR----DG-----PKVLQRKG 433 (465)
Q Consensus 376 ~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~------------~-d~~~la~~i~~ll~----~~-----~~~~~~~~ 433 (465)
+-||..|.+.+++--|... |.. ++.+|+.+. . |.++|-++|++.+. +. |..+.++.
T Consensus 497 Mka~~nGgL~~sv~DG~~~-E~~-~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~ 574 (601)
T TIGR02094 497 MKAAMNGVLNLSILDGWWG-EGY-DGDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMM 574 (601)
T ss_pred HHHHHcCCceeecccCccc-ccC-CCCcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHH
Confidence 9999999999999877776 444 678999998 4 89999999977652 21 33467777
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHH
Q 044542 434 LACKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 434 ~~~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
+++.+.....|||++++++|.++|
T Consensus 575 k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 575 KESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHh
Confidence 777666555799999999999987
No 95
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.66 E-value=1e-14 Score=140.93 Aligned_cols=306 Identities=12% Similarity=0.063 Sum_probs=181.0
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccC--CcceEEEeec---CCC---------
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQ--GNLHVHFAAN---DHG--------- 146 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~--~~~~v~~~~~---~~~--------- 146 (465)
||++.+. ..||.-.-. .++++|++.|++++++.............. ....+..... ...
T Consensus 7 ki~i~aG------gtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~ 79 (385)
T TIGR00215 7 TIALVAG------EASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRK 79 (385)
T ss_pred eEEEEeC------CccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHH
Confidence 7887764 456654444 999999999999999886643211110000 0000000000 000
Q ss_pred -ccccCCCCCCcEEEecCC-chhH-----HhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHH
Q 044542 147 -SVNLNNDGAFDYVHTESV-SLPH-----WRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRL 219 (465)
Q Consensus 147 -~~~~~~~~~~DiI~~~~~-~~~~-----~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (465)
.....++.+||+|++.++ +.+. ....++| ++..+. +-.+ . +.... .+
T Consensus 80 ~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip-~v~~i~--P~~w------------------a---w~~~~-~r- 133 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIK-IIYYIS--PQVW------------------A---WRKWR-AK- 133 (385)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCC-EEEEeC--CcHh------------------h---cCcch-HH-
Confidence 001117889999999875 2221 2233567 554331 1000 0 00011 11
Q ss_pred HHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEee-cccc
Q 044542 220 VDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAG-RLVR 298 (465)
Q Consensus 220 ~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~G-rl~~ 298 (465)
.+.+.+|.+++.++...+.+.+ +| .++.++.|++...... ....+...|+++|++++.+.++++.| |..+
T Consensus 134 ----~l~~~~d~v~~~~~~e~~~~~~-~g---~~~~~vGnPv~~~~~~-~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~ae 204 (385)
T TIGR00215 134 ----KIEKATDFLLAILPFEKAFYQK-KN---VPCRFVGHPLLDAIPL-YKPDRKSAREKLGIDHNGETLALLPGSRGSE 204 (385)
T ss_pred ----HHHHHHhHhhccCCCcHHHHHh-cC---CCEEEECCchhhhccc-cCCCHHHHHHHcCCCCCCCEEEEECCCCHHH
Confidence 3346789999999999888875 44 3567788887433221 11123456778898877755554555 5555
Q ss_pred -ccCHHHHHHHHHHhhhcCCCeEEEEEe-CCcchhHHHH----hc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCC
Q 044542 299 -DKGHPLLYEAFSSITRDHPGVYLLVAG-TGPWGRRYAE----LG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQG 370 (465)
Q Consensus 299 -~Kg~~~ll~a~~~l~~~~~~~~l~ivG-~g~~~~~~~~----l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg 370 (465)
.|++..+++|++.+.+++|++++++.+ .+...+.+++ ++ ..|.+.+. +...+|++||++|.+|
T Consensus 205 i~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~l~aADl~V~~S----- 275 (385)
T TIGR00215 205 VEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG----DARKAMFAADAALLAS----- 275 (385)
T ss_pred HHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc----hHHHHHHhCCEEeecC-----
Confidence 689999999999998888898887654 4333333332 22 35555433 5668999999999987
Q ss_pred CcHHHHHHHHcCCeEEec-CCCCcce---------------eeeeeCCc-eEEe-CC-CHHHHHHHHHHHHhCCh----H
Q 044542 371 LDLTLIEAMHCGRTVLTP-NYPSIVR---------------TVVVNEEL-GYTF-SP-NVKSFVEALELVIRDGP----K 427 (465)
Q Consensus 371 ~~~~~~EAma~G~PvI~s-~~gg~~~---------------e~v~~~~~-G~l~-~~-d~~~la~~i~~ll~~~~----~ 427 (465)
|.+.+|+|++|+|+|.. +.+...- .++.+.+. -.+. .. +++.+++.+.++++| + +
T Consensus 276 -Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~-~~~~~~ 353 (385)
T TIGR00215 276 -GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLEN-GLKAYK 353 (385)
T ss_pred -CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcC-CcccHH
Confidence 55777999999998876 2221110 12222221 1122 22 799999999999998 7 7
Q ss_pred HHHHHHHHHHHH
Q 044542 428 VLQRKGLACKEH 439 (465)
Q Consensus 428 ~~~~~~~~~~~~ 439 (465)
.++++.+...+.
T Consensus 354 ~~~~~~~~~~~~ 365 (385)
T TIGR00215 354 EMHRERQFFEEL 365 (385)
T ss_pred HHHHHHHHHHHH
Confidence 777776654444
No 96
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.63 E-value=7.8e-15 Score=126.28 Aligned_cols=159 Identities=25% Similarity=0.371 Sum_probs=89.7
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC--Cccc----------
Q 044542 82 LAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH--GSVN---------- 149 (465)
Q Consensus 82 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~---------- 149 (465)
|+++...+ +..||+++++.+++++|+++||+|++++....+....+ ......... ....
T Consensus 1 ili~~~~~---~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (177)
T PF13439_consen 1 ILITNIFL---PNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE------LVKIFVKIPYPIRKRFLRSFFFMRR 71 (177)
T ss_dssp -EEECC-T---TSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST------EEEE---TT-SSTSS--HHHHHHHH
T ss_pred CEEEEecC---CCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh------ccceeeeeecccccccchhHHHHHH
Confidence 45555555 47899999999999999999999999998876554433 111111000 0000
Q ss_pred ---cCCCCCCcEEEecCCchh---HHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHH
Q 044542 150 ---LNNDGAFDYVHTESVSLP---HWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEI 223 (465)
Q Consensus 150 ---~~~~~~~DiI~~~~~~~~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (465)
..++.+||+||+|..... .......| .+++.|+.+.. .... .........+.....+
T Consensus 72 ~~~~i~~~~~DiVh~~~~~~~~~~~~~~~~~~-~v~~~H~~~~~-------~~~~----~~~~~~~~~~~~~~~~----- 134 (177)
T PF13439_consen 72 LRRLIKKEKPDIVHIHGPPAFWIALLACRKVP-IVYTIHGPYFE-------RRFL----KSKLSPYSYLNFRIER----- 134 (177)
T ss_dssp HHHHHHHHT-SEEECCTTHCCCHHHHHHHCSC-EEEEE-HHH---------HHTT----TTSCCCHHHHHHCTTH-----
T ss_pred HHHHHHHcCCCeEEecccchhHHHHHhccCCC-EEEEeCCCccc-------cccc----ccccchhhhhhhhhhh-----
Confidence 005679999999985321 11112667 99999987632 0000 0000111111111111
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCcc
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFV 267 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~ 267 (465)
..++.+|.++++|+..++.+.+ +|++++++.|||||+|.+.|.
T Consensus 135 ~~~~~~~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 135 KLYKKADRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp HHHCCSSEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH-
T ss_pred hHHhcCCEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHcC
Confidence 4468999999999999999999 999999999999999998763
No 97
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=9.9e-13 Score=123.87 Aligned_cols=306 Identities=17% Similarity=0.136 Sum_probs=181.2
Q ss_pred CCChHHHHHHHHHHHHHhCCcE-EEEEeCCCCCCCCCcccCCcceEEEeecCC----CccccC-----------------
Q 044542 94 APGGMERHASTLYHALAARGHE-IHVFTAPSDRKPHNDVHQGNLHVHFAANDH----GSVNLN----------------- 151 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~----------------- 151 (465)
..||.-.....++++|.++|++ |.++....... ..........++...... ..+...
T Consensus 9 GTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e-~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~a~~il 87 (357)
T COG0707 9 GTGGHVFPALALAEELAKRGWEQVIVLGTGDGLE-AFLVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQARKIL 87 (357)
T ss_pred CCccchhHHHHHHHHHHhhCccEEEEecccccce-eeeccccCceEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888899999999999995 55553332211 111222233344333221 111100
Q ss_pred CCCCCcEEEecCC--chhH---HhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhh
Q 044542 152 NDGAFDYVHTESV--SLPH---WRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFF 226 (465)
Q Consensus 152 ~~~~~DiI~~~~~--~~~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (465)
++.+||+|+..+. ..+. ....++| ++....+.... ...+++ .
T Consensus 88 ~~~kPd~vig~Ggyvs~P~~~Aa~~~~iP-v~ihEqn~~~G-----------------------~ank~~---------~ 134 (357)
T COG0707 88 KKLKPDVVIGTGGYVSGPVGIAAKLLGIP-VIIHEQNAVPG-----------------------LANKIL---------S 134 (357)
T ss_pred HHcCCCEEEecCCccccHHHHHHHhCCCC-EEEEecCCCcc-----------------------hhHHHh---------H
Confidence 7899999999653 2222 2334566 55554442110 111111 2
Q ss_pred cccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHH
Q 044542 227 SSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLY 306 (465)
Q Consensus 227 ~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll 306 (465)
+.++.|.+.-+. . . -+.+.+++.+..|++..+... .+.. ..+.... . +.+.++++-|.....+=-+.+.
T Consensus 135 ~~a~~V~~~f~~----~-~-~~~~~~~~~~tG~Pvr~~~~~-~~~~--~~~~~~~-~-~~~~ilV~GGS~Ga~~ln~~v~ 203 (357)
T COG0707 135 KFAKKVASAFPK----L-E-AGVKPENVVVTGIPVRPEFEE-LPAA--EVRKDGR-L-DKKTILVTGGSQGAKALNDLVP 203 (357)
T ss_pred Hhhceeeecccc----c-c-ccCCCCceEEecCcccHHhhc-cchh--hhhhhcc-C-CCcEEEEECCcchhHHHHHHHH
Confidence 333444332222 1 1 245567899999999887665 2221 1111111 1 3434554555555444333444
Q ss_pred HHHHHhhhcCCCeE-EEEEeCCcchhHHHHhc-CC-eEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC
Q 044542 307 EAFSSITRDHPGVY-LLVAGTGPWGRRYAELG-QN-VKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR 383 (465)
Q Consensus 307 ~a~~~l~~~~~~~~-l~ivG~g~~~~~~~~l~-~~-V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~ 383 (465)
++...+.+ +++ ++.+|.+...+..+.+. .+ +.+.++. +++..+|++||++|. + +-++++.|..++|+
T Consensus 204 ~~~~~l~~---~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~--~dm~~~~~~ADLvIs---R--aGa~Ti~E~~a~g~ 273 (357)
T COG0707 204 EALAKLAN---RIQVIHQTGKNDLEELKSAYNELGVVRVLPFI--DDMAALLAAADLVIS---R--AGALTIAELLALGV 273 (357)
T ss_pred HHHHHhhh---CeEEEEEcCcchHHHHHHHHhhcCcEEEeeHH--hhHHHHHHhccEEEe---C--CcccHHHHHHHhCC
Confidence 45555543 355 45556554333333333 22 8899998 789999999999996 3 22579999999999
Q ss_pred eEEecCCCCcce-------eeeeeCCceEEeCC---CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 044542 384 TVLTPNYPSIVR-------TVVVNEELGYTFSP---NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAY 453 (465)
Q Consensus 384 PvI~s~~gg~~~-------e~v~~~~~G~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 453 (465)
|+|--..+...+ ..+++.+.|.+++. +++.+.+.|.+++++ ++.+++|.+++++....+ ..+.+++..
T Consensus 274 P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~-~~~l~~m~~~a~~~~~p~-aa~~i~~~~ 351 (357)
T COG0707 274 PAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSN-PEKLKAMAENAKKLGKPD-AAERIADLL 351 (357)
T ss_pred CEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCC-HHHHHHHHH
Confidence 999877665421 23455667888875 589999999999999 899999999998876663 555555555
Q ss_pred HHH
Q 044542 454 ERF 456 (465)
Q Consensus 454 ~~~ 456 (465)
+.+
T Consensus 352 ~~~ 354 (357)
T COG0707 352 LAL 354 (357)
T ss_pred HHH
Confidence 443
No 98
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.57 E-value=3.6e-13 Score=130.29 Aligned_cols=240 Identities=16% Similarity=0.127 Sum_probs=145.9
Q ss_pred HHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCccc-------Cc--------ccccccC
Q 044542 217 PRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEA-------GV--------RFPEKLG 281 (465)
Q Consensus 217 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~-------~~--------~~r~~~g 281 (465)
.+..-|+...+.||.+.+||+-++......++-.++ .|+|||++...|...... +. .+...+.
T Consensus 210 ~k~~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~pD--vV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~d 287 (633)
T PF05693_consen 210 HKHSIERAAAHYADVFTTVSEITAKEAEHLLKRKPD--VVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYD 287 (633)
T ss_dssp HHHHHHHHHHHHSSEEEESSHHHHHHHHHHHSS--S--EE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---
T ss_pred HHHHHHHHHHHhcCeeeehhhhHHHHHHHHhCCCCC--EEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 344456677889999999999999998887764333 788999998877654321 10 1111233
Q ss_pred CCCCCcEEEEEeecccc-ccCHHHHHHHHHHhhhc----CCC---eEEEEEeCCc----------------ch-------
Q 044542 282 VPANVSLVMGVAGRLVR-DKGHPLLYEAFSSITRD----HPG---VYLLVAGTGP----------------WG------- 330 (465)
Q Consensus 282 ~~~~~~~~l~~~Grl~~-~Kg~~~ll~a~~~l~~~----~~~---~~l~ivG~g~----------------~~------- 330 (465)
+..++.+.+..+||.+- .||+|.+|+|+.+|... ..+ +-|+|+-... .+
T Consensus 288 fd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~ 367 (633)
T PF05693_consen 288 FDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQ 367 (633)
T ss_dssp S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHH
Confidence 44455688888999975 89999999999988542 222 2344543210 00
Q ss_pred h----------------------------HH--------------------------------HHhc------CCe--EE
Q 044542 331 R----------------------------RY--------------------------------AELG------QNV--KV 342 (465)
Q Consensus 331 ~----------------------------~~--------------------------------~~l~------~~V--~~ 342 (465)
+ .+ ++++ ++| +|
T Consensus 368 ~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF 447 (633)
T PF05693_consen 368 EKIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIF 447 (633)
T ss_dssp HHHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE
T ss_pred HHHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEE
Confidence 0 00 0111 444 44
Q ss_pred cCC-CC------hhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeee-----eCCceEEeC-C
Q 044542 343 LGA-LE------AHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVV-----NEELGYTFS-P 409 (465)
Q Consensus 343 ~g~-v~------~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~-----~~~~G~l~~-~ 409 (465)
++. ++ .-+..+++..+|+.|+||.+ |++|.+.+|+.++|+|.|+|+..|.. ..+. ....|+.+- .
T Consensus 448 ~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYY-EPWGYTPlE~~a~gVPsITTnLsGFG-~~~~~~~~~~~~~GV~VvdR 525 (633)
T PF05693_consen 448 HPEYLSGTDGIFNLDYYDFVRGCDLGVFPSYY-EPWGYTPLECTAFGVPSITTNLSGFG-CWMQEHIEDPEEYGVYVVDR 525 (633)
T ss_dssp --S---TTSSSS-S-HHHHHHHSSEEEE--SS-BSS-HHHHHHHHTT--EEEETTBHHH-HHHHTTS-HHGGGTEEEE-S
T ss_pred eeccccCCCCCCCCCHHHHhccCceeeecccc-ccccCChHHHhhcCCceeeccchhHH-HHHHHhhccCcCCcEEEEeC
Confidence 432 21 24688999999999999987 99999999999999999999988764 2222 234565553 1
Q ss_pred -------CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhc
Q 044542 410 -------NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRMK 461 (465)
Q Consensus 410 -------d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 461 (465)
.++++++.|.++...++..+..++.++.+.... .+|+++...|.+.|.-.+
T Consensus 526 ~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~-~dW~~~~~yY~~Ay~~AL 583 (633)
T PF05693_consen 526 RDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDL-ADWKNFGKYYEKAYDLAL 583 (633)
T ss_dssp SSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGG-GBHHHHCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHH
Confidence 256777777788777666777777777665544 899999999999997654
No 99
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.55 E-value=3.6e-12 Score=121.58 Aligned_cols=281 Identities=11% Similarity=0.088 Sum_probs=162.7
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccC-CcceEEEeecC-CC--cc-----------------ccCC
Q 044542 94 APGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQ-GNLHVHFAAND-HG--SV-----------------NLNN 152 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~--~~-----------------~~~~ 152 (465)
..||.-.-...++++|.+.||+|.+++......... ... +.....+.... .+ .+ ...+
T Consensus 10 GTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l-~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 88 (352)
T PRK12446 10 GSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTI-IEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAYVRIR 88 (352)
T ss_pred CcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccccc-CcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888999999999999999998665433221 111 22222221111 11 11 0018
Q ss_pred CCCCcEEEecCCc-----hhHHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhc
Q 044542 153 DGAFDYVHTESVS-----LPHWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFS 227 (465)
Q Consensus 153 ~~~~DiI~~~~~~-----~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (465)
+.+||+||.+... .......++| +++.-.+. ......+ .+.+
T Consensus 89 ~~kPdvvi~~Ggy~s~p~~~aa~~~~~p-~~i~e~n~---------------------------~~g~~nr-----~~~~ 135 (352)
T PRK12446 89 KLKPDVIFSKGGFVSVPVVIGGWLNRVP-VLLHESDM---------------------------TPGLANK-----IALR 135 (352)
T ss_pred hcCCCEEEecCchhhHHHHHHHHHcCCC-EEEECCCC---------------------------CccHHHH-----HHHH
Confidence 8999999998742 2222334556 43322221 0011111 2234
Q ss_pred ccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCH-HHHH
Q 044542 228 SYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGH-PLLY 306 (465)
Q Consensus 228 ~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~-~~ll 306 (465)
.++.+++.-+... + +++.+++.++.|++..+..... +...++.++++++.+.++++.|.... +.+ +.+.
T Consensus 136 ~a~~v~~~f~~~~----~--~~~~~k~~~tG~Pvr~~~~~~~---~~~~~~~~~l~~~~~~iLv~GGS~Ga-~~in~~~~ 205 (352)
T PRK12446 136 FASKIFVTFEEAA----K--HLPKEKVIYTGSPVREEVLKGN---REKGLAFLGFSRKKPVITIMGGSLGA-KKINETVR 205 (352)
T ss_pred hhCEEEEEccchh----h--hCCCCCeEEECCcCCccccccc---chHHHHhcCCCCCCcEEEEECCccch-HHHHHHHH
Confidence 5566654332222 2 2345788999999987653221 23455677877777666655565543 334 3333
Q ss_pred HHHHHhhhcCCCeEE-EEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeE
Q 044542 307 EAFSSITRDHPGVYL-LVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTV 385 (465)
Q Consensus 307 ~a~~~l~~~~~~~~l-~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~Pv 385 (465)
+++..+.+ ++++ +++|....++..... +++...+++ .+++.++|+.||++|. + +-++++.|++++|+|.
T Consensus 206 ~~l~~l~~---~~~vv~~~G~~~~~~~~~~~-~~~~~~~f~-~~~m~~~~~~adlvIs---r--~G~~t~~E~~~~g~P~ 275 (352)
T PRK12446 206 EALPELLL---KYQIVHLCGKGNLDDSLQNK-EGYRQFEYV-HGELPDILAITDFVIS---R--AGSNAIFEFLTLQKPM 275 (352)
T ss_pred HHHHhhcc---CcEEEEEeCCchHHHHHhhc-CCcEEecch-hhhHHHHHHhCCEEEE---C--CChhHHHHHHHcCCCE
Confidence 44555432 3554 445654333323222 345556775 2579999999999996 2 3357999999999999
Q ss_pred EecCCCCcc---e-----eeeeeCCceEEeCC---CHHHHHHHHHHHHhCChHHH
Q 044542 386 LTPNYPSIV---R-----TVVVNEELGYTFSP---NVKSFVEALELVIRDGPKVL 429 (465)
Q Consensus 386 I~s~~gg~~---~-----e~v~~~~~G~l~~~---d~~~la~~i~~ll~~~~~~~ 429 (465)
|........ + +.+.+.+.+..+.. +++.+.+++.+++.| ++.+
T Consensus 276 I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~-~~~~ 329 (352)
T PRK12446 276 LLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHN-NEKY 329 (352)
T ss_pred EEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcC-HHHH
Confidence 988653211 0 13344555666543 789999999999988 6554
No 100
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.54 E-value=2.6e-12 Score=123.90 Aligned_cols=274 Identities=11% Similarity=0.109 Sum_probs=188.0
Q ss_pred CcEEEecCCc---hhHHhhhcCC--cEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccC
Q 044542 156 FDYVHTESVS---LPHWRAKMVP--NVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYN 230 (465)
Q Consensus 156 ~DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 230 (465)
-|+|.+|++. ++..+....| ++-+.+|-.++. .+++..+. +-...+ +-+-.+|
T Consensus 124 ~D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPFPs---~eifr~LP------------~r~eil-------~glL~aD 181 (474)
T PRK10117 124 DDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPT---PEIFNALP------------PHDELL-------EQLCDYD 181 (474)
T ss_pred CCEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCCCC---hHHHhhCC------------ChHHHH-------HHHHhCc
Confidence 3899998874 3444444333 266777754332 22332221 111111 3345678
Q ss_pred EEEEeChhHHHHHHHH----hCCC------------CCCEEEecCCCCCCCccCCcc-----cCcccccccCCCCCCcEE
Q 044542 231 QHICISNSAAEVLVKI----YQLP------------QRNVHVILNGVDETKFVHDPE-----AGVRFPEKLGVPANVSLV 289 (465)
Q Consensus 231 ~ii~~S~~~~~~~~~~----~~~~------------~~ki~vi~ngvd~~~~~~~~~-----~~~~~r~~~g~~~~~~~~ 289 (465)
.|=+.+...++.+.+. .|+. .-++.+.|-|||.+.|..... ....++++++ +. .+
T Consensus 182 lIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~---~~-~l 257 (474)
T PRK10117 182 LLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAELK---NV-QN 257 (474)
T ss_pred cceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHcC---CC-eE
Confidence 8888777776655542 1221 124677888999887754221 1123444443 33 45
Q ss_pred EEEeeccccccCHHHHHHHHHHhhhcCCC----eEEEEEeCCc---------chhHHHHhc------------CCeEE-c
Q 044542 290 MGVAGRLVRDKGHPLLYEAFSSITRDHPG----VYLLVAGTGP---------WGRRYAELG------------QNVKV-L 343 (465)
Q Consensus 290 l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g~---------~~~~~~~l~------------~~V~~-~ 343 (465)
|+-+.|++.-||+..=++|++++.+++|+ +.|+-+.... .+.+++++. ..|.+ .
T Consensus 258 ilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~ 337 (474)
T PRK10117 258 IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLN 337 (474)
T ss_pred EEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEec
Confidence 55789999999999999999999998875 4455554321 111222221 22444 4
Q ss_pred CCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC-----eEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHH
Q 044542 344 GALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR-----TVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEA 417 (465)
Q Consensus 344 g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~-----PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~ 417 (465)
..++.+++..+|+.|||++.++.+ +|+.++..|+.+|.. ++|.|...|..+ .+. ..++++| |.++++++
T Consensus 338 ~~~~~~~l~alyr~ADv~lVTplR-DGMNLVAkEyva~q~~~~~GvLILSefAGaA~-~L~---~AllVNP~d~~~~A~A 412 (474)
T PRK10117 338 QHFDRKLLMKIFRYSDVGLVTPLR-DGMNLVAKEYVAAQDPANPGVLVLSQFAGAAN-ELT---SALIVNPYDRDEVAAA 412 (474)
T ss_pred CCCCHHHHHHHHHhccEEEecccc-cccccccchheeeecCCCCccEEEecccchHH-HhC---CCeEECCCCHHHHHHH
Confidence 567999999999999999999987 999999999999976 378899888874 332 4899999 99999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhc
Q 044542 418 LELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRMK 461 (465)
Q Consensus 418 i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 461 (465)
|.+.+..+++++++..+..++.+.. ++....++.+++-+..+.
T Consensus 413 i~~AL~Mp~~Er~~R~~~l~~~v~~-~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 413 LDRALTMPLAERISRHAEMLDVIVK-NDINHWQECFISDLKQIV 455 (474)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhh-CCHHHHHHHHHHHHHHhh
Confidence 9999999888888888888888877 799999999998887654
No 101
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.51 E-value=1e-12 Score=127.24 Aligned_cols=185 Identities=13% Similarity=0.178 Sum_probs=137.1
Q ss_pred cccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHH
Q 044542 227 SSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLY 306 (465)
Q Consensus 227 ~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll 306 (465)
.+.|.||+.++...+.+.++++ +..++.++|-|+- +...... ..+..+++++. +..+
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~-~~~~~~~ip~g~i---~~~~~~~------------r~~~~~l~~t~-------s~~I 294 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLD-NEYQEQISQLGYL---YPFKKDN------------KYRKQALILTN-------SDQI 294 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhC-cccCceEEEEEEE---Eeecccc------------CCcccEEEECC-------HHHH
Confidence 6789999999998888888775 3567788888765 2111111 01122334451 8899
Q ss_pred HHHHHhhhcCCCeEEEEEeCCcc-hhHHHHhc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC
Q 044542 307 EAFSSITRDHPGVYLLVAGTGPW-GRRYAELG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR 383 (465)
Q Consensus 307 ~a~~~l~~~~~~~~l~ivG~g~~-~~~~~~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~ 383 (465)
++++++.++.|+++|.| |.+.. ...+.++. ++|+..+.+...++.++|..||+++..|. +|++++++.||+..|+
T Consensus 295 ~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~-~e~~~~al~eA~~~G~ 372 (438)
T TIGR02919 295 EHLEEIVQALPDYHFHI-AALTEMSSKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINH-GNEILNAVRRAFEYNL 372 (438)
T ss_pred HHHHHHHHhCCCcEEEE-EecCcccHHHHHHHhcCCcEEECCcChHHHHHHHHhccEEEEccc-cccHHHHHHHHHHcCC
Confidence 99999999999999999 76554 45554443 55555444444689999999999999996 5999999999999999
Q ss_pred eEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 044542 384 TVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHA 440 (465)
Q Consensus 384 PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 440 (465)
|+++.+......+++.+ |.+++. ++++++++|.+++.+ ++.+++.-..-++.+
T Consensus 373 pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d-~~~~~~~~~~q~~~a 426 (438)
T TIGR02919 373 LILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLND-PNQFRELLEQQREHA 426 (438)
T ss_pred cEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh
Confidence 99999877544355554 788998 999999999999999 766665544444443
No 102
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.51 E-value=1e-13 Score=105.25 Aligned_cols=92 Identities=22% Similarity=0.406 Sum_probs=84.7
Q ss_pred eEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 044542 360 VFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEH 439 (465)
Q Consensus 360 v~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 439 (465)
++++|+.. .+++.+++|+||||+|||+.+.++.. +++.++..++.++ |++++.+++..++++ ++.+++++++++++
T Consensus 1 i~Ln~~~~-~~~~~r~~E~~a~G~~vi~~~~~~~~-~~~~~~~~~~~~~-~~~el~~~i~~ll~~-~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 1 INLNPSRS-DGPNMRIFEAMACGTPVISDDSPGLR-EIFEDGEHIITYN-DPEELAEKIEYLLEN-PEERRRIAKNARER 76 (92)
T ss_pred CEeeCCCC-CCCchHHHHHHHCCCeEEECChHHHH-HHcCCCCeEEEEC-CHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
Confidence 46778865 89999999999999999999999988 7888888899998 999999999999999 99999999999999
Q ss_pred HHhhCCHHHHHHHHHH
Q 044542 440 ALSMFTATKMASAYER 455 (465)
Q Consensus 440 ~~~~fs~~~~~~~~~~ 455 (465)
++++|+|++.++++++
T Consensus 77 v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 77 VLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHhCCHHHHHHHHHC
Confidence 9999999999998863
No 103
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.49 E-value=3.7e-12 Score=124.46 Aligned_cols=275 Identities=19% Similarity=0.236 Sum_probs=160.8
Q ss_pred CCCcEEEecCCc---hhHHhhhcCCc--EEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcc
Q 044542 154 GAFDYVHTESVS---LPHWRAKMVPN--VAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSS 228 (465)
Q Consensus 154 ~~~DiI~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (465)
..-|+|.+|++. ++..+....|+ +.+.+|-.++. .++++.+. .....+ +-+-.
T Consensus 140 ~~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs---~e~fr~lP------------~r~eiL-------~glL~ 197 (474)
T PF00982_consen 140 RPGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPFPS---SEIFRCLP------------WREEIL-------RGLLG 197 (474)
T ss_dssp -TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S-------HHHHTTST------------THHHHH-------HHHTT
T ss_pred cCCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCCCC---HHHHhhCC------------cHHHHH-------HHhhc
Confidence 356899999874 45555554443 67777765432 23332221 111111 34568
Q ss_pred cCEEEEeChhHHHHHHH----HhCCC--C-----------CCEEEecCCCCCCCccCCcc------cCcccccccCCCCC
Q 044542 229 YNQHICISNSAAEVLVK----IYQLP--Q-----------RNVHVILNGVDETKFVHDPE------AGVRFPEKLGVPAN 285 (465)
Q Consensus 229 ~d~ii~~S~~~~~~~~~----~~~~~--~-----------~ki~vi~ngvd~~~~~~~~~------~~~~~r~~~g~~~~ 285 (465)
||.|-+.+...++.+.. .+|+. . .++.+.|-|||.+.+..... ....++++++ +
T Consensus 198 aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~---~ 274 (474)
T PF00982_consen 198 ADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK---G 274 (474)
T ss_dssp SSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT---T
T ss_pred CCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC---C
Confidence 89999988887776644 23321 1 23777888999887753211 1233555553 2
Q ss_pred CcEEEEEeeccccccCHHHHHHHHHHhhhcCCC----eEEEEEeCCc---c------hhHHHHh--------c----CCe
Q 044542 286 VSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPG----VYLLVAGTGP---W------GRRYAEL--------G----QNV 340 (465)
Q Consensus 286 ~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g~---~------~~~~~~l--------~----~~V 340 (465)
+..+|+-+.|++..||+..=+.|++++.+++|+ +.|+-++... . +++++++ + ..|
T Consensus 275 ~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI 354 (474)
T PF00982_consen 275 KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPI 354 (474)
T ss_dssp -SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SE
T ss_pred CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeE
Confidence 225566899999999999999999999998864 5666665321 1 1122221 1 224
Q ss_pred -EEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCe----EEecCCCCcceeeeeeCCceEEeCC-CHHHH
Q 044542 341 -KVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRT----VLTPNYPSIVRTVVVNEELGYTFSP-NVKSF 414 (465)
Q Consensus 341 -~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~P----vI~s~~gg~~~e~v~~~~~G~l~~~-d~~~l 414 (465)
.+.+.++.+++..+|+.||+++.+|.+ +|+.++..|+.+|..+ +|.|...|.. +.+ .+..++++| |++++
T Consensus 355 ~~~~~~~~~~~~~aly~~aDv~lvTslr-DGmNLva~Eyva~q~~~~GvLiLSefaGaa-~~L--~~~al~VNP~d~~~~ 430 (474)
T PF00982_consen 355 IYIYRSLSFEELLALYRAADVALVTSLR-DGMNLVAKEYVACQDDNPGVLILSEFAGAA-EQL--SEAALLVNPWDIEEV 430 (474)
T ss_dssp EEE-S---HHHHHHHHHH-SEEEE--SS-BS--HHHHHHHHHS-TS--EEEEETTBGGG-GT---TTS-EEE-TT-HHHH
T ss_pred EEEecCCCHHHHHHHHHhhhhEEecchh-hccCCcceEEEEEecCCCCceEeeccCCHH-HHc--CCccEEECCCChHHH
Confidence 455678999999999999999999997 9999999999999874 7788888877 433 223489999 99999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 044542 415 VEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFL 458 (465)
Q Consensus 415 a~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 458 (465)
|++|.+++..++++++...++.++++.+ ++....++.+++-++
T Consensus 431 A~ai~~AL~M~~~Er~~r~~~~~~~v~~-~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 431 ADAIHEALTMPPEERKERHARLREYVRE-HDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhHh-CCHHHHHHHHHHHhh
Confidence 9999999999888888888888888877 799999998887654
No 104
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=9.9e-11 Score=108.87 Aligned_cols=320 Identities=16% Similarity=0.124 Sum_probs=199.2
Q ss_pred hHHHHHHHHHHHHHhC--CcEEEEEeCCCCCCCCC-cccCCcceEEEeecCC--CccccCCCCCCcEEEecCC-chhH--
Q 044542 97 GMERHASTLYHALAAR--GHEIHVFTAPSDRKPHN-DVHQGNLHVHFAANDH--GSVNLNNDGAFDYVHTESV-SLPH-- 168 (465)
Q Consensus 97 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~~~~~~~~DiI~~~~~-~~~~-- 168 (465)
|-...+.-|.++|.++ ++.+.+-+..+.+.... +.......+.+.+... ..+++.+..+||++++... .++.
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli 139 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLI 139 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHH
Confidence 5567788999999998 66766666444332222 2222224444444432 2334447889998776543 2222
Q ss_pred --HhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHH
Q 044542 169 --WRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKI 246 (465)
Q Consensus 169 --~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~ 246 (465)
...+++|.+++.-.- . .+.. .-+..+..+. +..+++.|.|++.|+..++.+.+
T Consensus 140 ~e~~~~~~p~~LvNaRL-S---------~rS~------------~~y~k~~~~~--~~~~~~i~li~aQse~D~~Rf~~- 194 (419)
T COG1519 140 NELKRRGIPLVLVNARL-S---------DRSF------------ARYAKLKFLA--RLLFKNIDLILAQSEEDAQRFRS- 194 (419)
T ss_pred HHHHHcCCCEEEEeeee-c---------hhhh------------HHHHHHHHHH--HHHHHhcceeeecCHHHHHHHHh-
Confidence 224567733332221 0 0000 1112222222 26678999999999999999999
Q ss_pred hCCCCCCEEEecCC-CCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccC-HHHHHHHHHHhhhcCCCeEEEEE
Q 044542 247 YQLPQRNVHVILNG-VDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKG-HPLLYEAFSSITRDHPGVYLLVA 324 (465)
Q Consensus 247 ~~~~~~ki~vi~ng-vd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg-~~~ll~a~~~l~~~~~~~~l~iv 324 (465)
+|.++ +.+..|- .|.+.-.........+|++++.+ + .+++..+. +.| -+.++++++.+++++|+..+++|
T Consensus 195 LGa~~--v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~--r-~v~iaaST---H~GEeei~l~~~~~l~~~~~~~llIlV 266 (419)
T COG1519 195 LGAKP--VVVTGNLKFDIEPPPQLAAELAALRRQLGGH--R-PVWVAAST---HEGEEEIILDAHQALKKQFPNLLLILV 266 (419)
T ss_pred cCCcc--eEEecceeecCCCChhhHHHHHHHHHhcCCC--C-ceEEEecC---CCchHHHHHHHHHHHHhhCCCceEEEe
Confidence 68644 7776662 12211111122234567777654 2 33334444 344 44588999999999999999999
Q ss_pred eCCcchh-----HHHHhc---------------CCeEEcCCCChhHHHHHHHhcCeEEec-ccCCCCCcHHHHHHHHcCC
Q 044542 325 GTGPWGR-----RYAELG---------------QNVKVLGALEAHQLSEFYNALDVFVNP-TLRPQGLDLTLIEAMHCGR 383 (465)
Q Consensus 325 G~g~~~~-----~~~~l~---------------~~V~~~g~v~~~~~~~~~~~aDv~v~p-s~~~eg~~~~~~EAma~G~ 383 (465)
-.-+++- .+++.+ .+|.+...+ -|+..+|..+|+.++- |.. +--|.-++|+.++|+
T Consensus 267 PRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm--GEL~l~y~~adiAFVGGSlv-~~GGHN~LEpa~~~~ 343 (419)
T COG1519 267 PRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM--GELGLLYGIADIAFVGGSLV-PIGGHNPLEPAAFGT 343 (419)
T ss_pred cCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH--hHHHHHHhhccEEEECCccc-CCCCCChhhHHHcCC
Confidence 8766541 222221 356666665 7999999999998874 444 344789999999999
Q ss_pred eEEecCC----CCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 044542 384 TVLTPNY----PSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFL 458 (465)
Q Consensus 384 PvI~s~~----gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 458 (465)
|||.... ..+. +.+.+.+.|+.++ |.+.+++++..++.+ ++.+++|++++.+.+.++ ....+++.+.++
T Consensus 344 pvi~Gp~~~Nf~ei~-~~l~~~ga~~~v~-~~~~l~~~v~~l~~~-~~~r~~~~~~~~~~v~~~---~gal~r~l~~l~ 416 (419)
T COG1519 344 PVIFGPYTFNFSDIA-ERLLQAGAGLQVE-DADLLAKAVELLLAD-EDKREAYGRAGLEFLAQN---RGALARTLEALK 416 (419)
T ss_pred CEEeCCccccHHHHH-HHHHhcCCeEEEC-CHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHh---hHHHHHHHHHhh
Confidence 9998543 2233 2344555677777 688888888888887 899999999999998875 334555555544
No 105
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.40 E-value=2e-12 Score=109.22 Aligned_cols=141 Identities=30% Similarity=0.396 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCcc------------ccC--CCCCCcEEEe
Q 044542 96 GGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSV------------NLN--NDGAFDYVHT 161 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~~~--~~~~~DiI~~ 161 (465)
||+++++.+++++|.++||+|++++......... .......+...+...... ... +..+||+||+
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~ 79 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE-EEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHA 79 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S-EEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc-cccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEe
Confidence 8999999999999999999999999877655332 223334444433222211 111 6789999999
Q ss_pred cCCc--hhHHh---hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeC
Q 044542 162 ESVS--LPHWR---AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICIS 236 (465)
Q Consensus 162 ~~~~--~~~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S 236 (465)
+++. +...+ ..++| ++.++|+...... ..+...+...+ ++..++++|.++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~----------------~~~~~~~~~~~-----~~~~~~~ad~vi~~S 137 (160)
T PF13579_consen 80 HSPTAGLVAALARRRRGIP-LVVTVHGTLFRRG----------------SRWKRRLYRWL-----ERRLLRRADRVIVVS 137 (160)
T ss_dssp EHHHHHHHHHHHHHHHT---EEEE-SS-T----------------------HHHHHHHHH-----HHHHHHH-SEEEESS
T ss_pred cccchhHHHHHHHHccCCc-EEEEECCCchhhc----------------cchhhHHHHHH-----HHHHHhcCCEEEECC
Confidence 9852 11222 23567 9999998542210 00111222222 347789999999999
Q ss_pred hhHHHHHHHHhCCCCCCEEEecCC
Q 044542 237 NSAAEVLVKIYQLPQRNVHVILNG 260 (465)
Q Consensus 237 ~~~~~~~~~~~~~~~~ki~vi~ng 260 (465)
+..++.+.+ +|++++|+.|||||
T Consensus 138 ~~~~~~l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 138 EAMRRYLRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp HHHHHHHHH-H---GGGEEE----
T ss_pred HHHHHHHHH-hCCCCCcEEEeCcC
Confidence 999999999 89999999999998
No 106
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.40 E-value=7e-11 Score=120.98 Aligned_cols=230 Identities=18% Similarity=0.186 Sum_probs=164.6
Q ss_pred HhhcccCEEEEeChhHHHHHHHHh-----CCC--CCCEEEecCCCCCCCcc-CC--------------------------
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIY-----QLP--QRNVHVILNGVDETKFV-HD-------------------------- 269 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~-----~~~--~~ki~vi~ngvd~~~~~-~~-------------------------- 269 (465)
..+..++.+-+||+-..+..++.+ +.+ ..++.-|-|||+...+. |.
T Consensus 347 laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~~~~i~~ITNGVh~~~W~~P~~~~l~~~~~g~~w~~~~~~~~~~~~~ 426 (778)
T cd04299 347 LALRLAQRANGVSRLHGEVSREMFAGLWPGFPVEEVPIGHVTNGVHVPTWVAPEMRELYDRYLGGDWRERPTDPELWEAV 426 (778)
T ss_pred HHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcccCceeceeCCcchhhhcCHHHHHHHHHhcCcchhhccchHHHHhhh
Confidence 446788999999987754444422 222 45689999999998776 21
Q ss_pred ---cc-----c----Cc----cccccc-----------------C--CCCCCcEEEEEeeccccccCHHHHHHHHHHhhh
Q 044542 270 ---PE-----A----GV----RFPEKL-----------------G--VPANVSLVMGVAGRLVRDKGHPLLYEAFSSITR 314 (465)
Q Consensus 270 ---~~-----~----~~----~~r~~~-----------------g--~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~ 314 (465)
++ . +. .++++. + +.++ .++++++.|+..+||.+++++.+.++.+
T Consensus 427 ~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd-~ltigfarRfa~YKR~~Lil~dl~rl~~ 505 (778)
T cd04299 427 DDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPN-VLTIGFARRFATYKRATLLLRDPERLKR 505 (778)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCC-ccEEeeeecchhhhhHHHHHHHHHHHHH
Confidence 00 0 00 111111 2 2233 3789999999999999999998887754
Q ss_pred c----CCCeEEEEEeCCcc-----hhH---HHHhc------CCeEEcCCCChhHHHHHHHhcCeEEeccc--CCCCCcHH
Q 044542 315 D----HPGVYLLVAGTGPW-----GRR---YAELG------QNVKVLGALEAHQLSEFYNALDVFVNPTL--RPQGLDLT 374 (465)
Q Consensus 315 ~----~~~~~l~ivG~g~~-----~~~---~~~l~------~~V~~~g~v~~~~~~~~~~~aDv~v~ps~--~~eg~~~~ 374 (465)
- ..+++++++|++.. ++. +.++. .+|.|+...+.+-...+++.+|+.++||. . |.+|++
T Consensus 506 il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~-EAsGTS 584 (778)
T cd04299 506 LLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPL-EASGTS 584 (778)
T ss_pred HhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCC-CCCccc
Confidence 1 13599999998641 122 22222 58999888876777778899999999997 5 999999
Q ss_pred HHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-------------CHHHHHHHHHHHHh----C-----ChHHHHHH
Q 044542 375 LIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-------------NVKSFVEALELVIR----D-----GPKVLQRK 432 (465)
Q Consensus 375 ~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-------------d~~~la~~i~~ll~----~-----~~~~~~~~ 432 (465)
-+-||.-|.+-+++--|... |.. ++.+|+.+.+ |.++|-+.|++.+- + .|..+.+|
T Consensus 585 gMKA~~NG~LnlSvlDGww~-E~~-~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~ 662 (778)
T cd04299 585 GMKAALNGGLNLSVLDGWWD-EGY-DGENGWAIGDGDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAM 662 (778)
T ss_pred hHHHHHcCCeeeecccCccc-ccc-CCCCceEeCCCccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 99999999999999888887 554 7899999965 34555566654332 2 15567788
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHH
Q 044542 433 GLACKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 433 ~~~~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
.+++.+.+...|||++|+++|.+-|
T Consensus 663 ~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 663 MKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHh
Confidence 8888887777999999999998754
No 107
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=7.4e-11 Score=113.27 Aligned_cols=273 Identities=18% Similarity=0.242 Sum_probs=188.7
Q ss_pred CcEEEecCCc---hhHHhhhcCCc--EEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccC
Q 044542 156 FDYVHTESVS---LPHWRAKMVPN--VAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYN 230 (465)
Q Consensus 156 ~DiI~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 230 (465)
=|+|.+|++. ++..+...+|. +.+.+|-.++. +++++-+. +.... ..-+-.||
T Consensus 148 gDiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPs---sEvfr~lP------------~r~eI-------l~gll~~d 205 (486)
T COG0380 148 GDIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPS---SEVFRCLP------------WREEI-------LEGLLGAD 205 (486)
T ss_pred CCEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCC---HHHHhhCc------------hHHHH-------HHHhhcCC
Confidence 3999999874 34455555553 56667764432 23332221 11111 13355788
Q ss_pred EEEEeChhHHHHHHHHh----C------C-------CCCCEEEecCCCCCCCccCCcccC------cccccccCCCCCCc
Q 044542 231 QHICISNSAAEVLVKIY----Q------L-------PQRNVHVILNGVDETKFVHDPEAG------VRFPEKLGVPANVS 287 (465)
Q Consensus 231 ~ii~~S~~~~~~~~~~~----~------~-------~~~ki~vi~ngvd~~~~~~~~~~~------~~~r~~~g~~~~~~ 287 (465)
.|=+.++..++.+.... + + ...++..+|-|||+..|......+ .++++.++ .+.
T Consensus 206 ligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~- 282 (486)
T COG0380 206 LIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELG--RNK- 282 (486)
T ss_pred eeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhc--CCc-
Confidence 88888887777665421 1 0 114677889999998876533221 22333332 223
Q ss_pred EEEEEeeccccccCHHHHHHHHHHhhhcCCC----eEEEEEeCCc---ch------hHHHHh--------c----CCeEE
Q 044542 288 LVMGVAGRLVRDKGHPLLYEAFSSITRDHPG----VYLLVAGTGP---WG------RRYAEL--------G----QNVKV 342 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g~---~~------~~~~~l--------~----~~V~~ 342 (465)
.+++.+.|++.-||+..=+.|++++..++|. +.++-++... -. ..++++ + ..|.+
T Consensus 283 kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~ 362 (486)
T COG0380 283 KLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHY 362 (486)
T ss_pred eEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEE
Confidence 5555789999999999999999999988874 4455555421 11 111211 1 34444
Q ss_pred -cCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC----eEEecCCCCcceeeeeeCCceEEeCC-CHHHHHH
Q 044542 343 -LGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR----TVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVE 416 (465)
Q Consensus 343 -~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~----PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~ 416 (465)
.-.++++++..+|..||+++.++.+ +|+.++..|+.+|.- |.|.|...|.. ..+.+ .++++| |.+++++
T Consensus 363 l~~~~~~~~l~al~~~aDv~lVtplr-DGMNLvakEyVa~q~~~~G~LiLSeFaGaa-~~L~~---AliVNP~d~~~va~ 437 (486)
T COG0380 363 LHRDLDRNELLALYRAADVMLVTPLR-DGMNLVAKEYVAAQRDKPGVLILSEFAGAA-SELRD---ALIVNPWDTKEVAD 437 (486)
T ss_pred EeccCCHHHHHHHHhhhceeeecccc-ccccHHHHHHHHhhcCCCCcEEEeccccch-hhhcc---CEeECCCChHHHHH
Confidence 4558999999999999999999987 999999999999854 78888888877 44432 799999 9999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 044542 417 ALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLR 459 (465)
Q Consensus 417 ~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 459 (465)
+|.+.+..+++++++.-+..++.+.+ ++...+++.+++-+.+
T Consensus 438 ai~~AL~m~~eEr~~r~~~~~~~v~~-~d~~~W~~~fl~~la~ 479 (486)
T COG0380 438 AIKRALTMSLEERKERHEKLLKQVLT-HDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHh
Confidence 99999999888888877888888877 6999999998876654
No 108
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.36 E-value=5.1e-11 Score=112.99 Aligned_cols=280 Identities=19% Similarity=0.198 Sum_probs=157.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCc---ceEEEeecCCCcccc------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGN---LHVHFAANDHGSVNL------ 150 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~------ 150 (465)
|||++..... .-|.-.+...++++| +||+|++++.......... .... ..+...... +....
T Consensus 1 MkIl~~v~~~-----G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 71 (318)
T PF13528_consen 1 MKILFYVQGH-----GLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-RFPVREIPGLGPIQEN-GRLDRWKTVRN 71 (318)
T ss_pred CEEEEEeCCC-----CcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-ccCEEEccCceEeccC-CccchHHHHHH
Confidence 8999999863 357777888999999 4899999998854311111 0010 111111110 00000
Q ss_pred ------------------CCCCCCcEEEecCCchhHHh--hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchh
Q 044542 151 ------------------NNDGAFDYVHTESVSLPHWR--AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMT 210 (465)
Q Consensus 151 ------------------~~~~~~DiI~~~~~~~~~~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (465)
.+..+||+|++....+..+. ..++| .+...|..+........ + ...
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~~~~~~aa~~~giP-~i~i~~~~~~~~~~~~~---------~----~~~ 137 (318)
T PF13528_consen 72 NIRWLARLARRIRREIRWLREFRPDLVISDFYPLAALAARRAGIP-VIVISNQYWFLHPNFWL---------P----WDQ 137 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCCEEEEcChHHHHHHHHhcCCC-EEEEEehHHcccccCCc---------c----hhh
Confidence 06788999999876544433 34678 76666654321100000 0 001
Q ss_pred hhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEE
Q 044542 211 ELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVM 290 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l 290 (465)
.....+.+.... ..+..++..+..+.... . .+..++.+++..+........ +.+.+.++
T Consensus 138 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--~-----~~~~~~~~~~p~~~~~~~~~~-------------~~~~~~iL 196 (318)
T PF13528_consen 138 DFGRLIERYIDR-YHFPPADRRLALSFYPP--L-----PPFFRVPFVGPIIRPEIRELP-------------PEDEPKIL 196 (318)
T ss_pred hHHHHHHHhhhh-ccCCcccceecCCcccc--c-----cccccccccCchhcccccccC-------------CCCCCEEE
Confidence 122222222211 11344444444443310 0 001222233332222111111 12334788
Q ss_pred EEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCC
Q 044542 291 GVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQG 370 (465)
Q Consensus 291 ~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg 370 (465)
+++|..... .++++++.+ ++..++++|....... .++|.+.++. .+++.++++.||++|..+ |
T Consensus 197 v~~gg~~~~----~~~~~l~~~----~~~~~~v~g~~~~~~~----~~ni~~~~~~-~~~~~~~m~~ad~vIs~~----G 259 (318)
T PF13528_consen 197 VYFGGGGPG----DLIEALKAL----PDYQFIVFGPNAADPR----PGNIHVRPFS-TPDFAELMAAADLVISKG----G 259 (318)
T ss_pred EEeCCCcHH----HHHHHHHhC----CCCeEEEEcCCccccc----CCCEEEeecC-hHHHHHHHHhCCEEEECC----C
Confidence 899987655 566777765 5778888887531111 4899988875 379999999999999743 2
Q ss_pred CcHHHHHHHHcCCeEEecCCCCccee-----eeeeCCceEEeCC---CHHHHHHHHHHH
Q 044542 371 LDLTLIEAMHCGRTVLTPNYPSIVRT-----VVVNEELGYTFSP---NVKSFVEALELV 421 (465)
Q Consensus 371 ~~~~~~EAma~G~PvI~s~~gg~~~e-----~v~~~~~G~l~~~---d~~~la~~i~~l 421 (465)
-.++.||+++|+|+|.-...+..|+ .+.+.+.|..++. +++.|.++|+++
T Consensus 260 -~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 260 -YTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred -HHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 2369999999999999888665532 3445567777653 788888888754
No 109
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.36 E-value=7.3e-11 Score=123.23 Aligned_cols=274 Identities=12% Similarity=0.138 Sum_probs=187.5
Q ss_pred cEEEecCCc---hhHHhhhcCCc--EEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCE
Q 044542 157 DYVHTESVS---LPHWRAKMVPN--VAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQ 231 (465)
Q Consensus 157 DiI~~~~~~---~~~~~~~~~p~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 231 (465)
|+|.+|.+. ++..+.+..|. +.+.+|-.++. +++++.+. +-...+ +-+-.||.
T Consensus 203 d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs---~eifr~LP------------~r~eiL-------~glL~aDl 260 (854)
T PLN02205 203 DFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPS---SEIYKTLP------------IREELL-------RALLNSDL 260 (854)
T ss_pred CEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCCCC---hHHHhhCC------------cHHHHH-------HHHhcCCe
Confidence 799999874 44455444432 66777764432 22332221 111111 44557899
Q ss_pred EEEeChhHHHHHHH----HhCCC---------------CCCEEEecCCCCCCCccCCcc------cCcccccccCCCCCC
Q 044542 232 HICISNSAAEVLVK----IYQLP---------------QRNVHVILNGVDETKFVHDPE------AGVRFPEKLGVPANV 286 (465)
Q Consensus 232 ii~~S~~~~~~~~~----~~~~~---------------~~ki~vi~ngvd~~~~~~~~~------~~~~~r~~~g~~~~~ 286 (465)
|=+.+...++.+.+ ..|+. .-++.+.|-|||.+.|..... ...+++++++- .+
T Consensus 261 IGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~--~~ 338 (854)
T PLN02205 261 IGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD--QD 338 (854)
T ss_pred EEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc--CC
Confidence 98888777766654 22322 123667888999887754221 11234555431 12
Q ss_pred cEEEEEeeccccccCHHHHHHHHHHhhhcCCCe----EEEEEeCC-----cchh----HHHHh--------c----CCeE
Q 044542 287 SLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGV----YLLVAGTG-----PWGR----RYAEL--------G----QNVK 341 (465)
Q Consensus 287 ~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~----~l~ivG~g-----~~~~----~~~~l--------~----~~V~ 341 (465)
..+++-+.|++..||+..=+.|++++.+++|++ .|+-+... +..+ +++++ + ..|+
T Consensus 339 ~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~ 418 (854)
T PLN02205 339 RIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIV 418 (854)
T ss_pred CEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEE
Confidence 356668999999999999999999999988865 45544421 1111 11121 1 2455
Q ss_pred Ec-CCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC-------------------eEEecCCCCcceeeeeeC
Q 044542 342 VL-GALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR-------------------TVLTPNYPSIVRTVVVNE 401 (465)
Q Consensus 342 ~~-g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~-------------------PvI~s~~gg~~~e~v~~~ 401 (465)
++ ..++.+++..+|+.|||++.++.+ +|+.++..|+.+|.. .+|.|...|...+ +
T Consensus 419 ~~~~~~~~~e~~aly~~ADv~lVT~lR-DGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~-L--- 493 (854)
T PLN02205 419 LIDAPLKFYERVAYYVVAECCLVTAVR-DGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPS-L--- 493 (854)
T ss_pred EEecCCCHHHHHHHHHhccEEEecccc-ccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHH-h---
Confidence 54 678999999999999999999987 999999999999864 3677787777633 3
Q ss_pred CceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 402 ELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 402 ~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
...++++| |.++++++|.+.+..++++++..-++.++++.. ++...+++.++.-+++.
T Consensus 494 ~~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~-~d~~~W~~~fl~~l~~~ 552 (854)
T PLN02205 494 SGAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVST-HDVGYWARSFLQDLERT 552 (854)
T ss_pred CcCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHH
Confidence 24799999 999999999999999877777777788888877 69999999888776655
No 110
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.35 E-value=2.4e-10 Score=109.61 Aligned_cols=323 Identities=12% Similarity=0.142 Sum_probs=181.7
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC-CcEEEEEeCCCCCCCC-----CcccCC-c---ceEEEeecC--CCc
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAAR-GHEIHVFTAPSDRKPH-----NDVHQG-N---LHVHFAAND--HGS 147 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~-----~~~~~~-~---~~v~~~~~~--~~~ 147 (465)
|||++++..=| . -.-+.-+.++|.+. ++++.++......... .++... . ..+...... ...
T Consensus 1 ~ki~~v~GtRp---e----~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (365)
T TIGR03568 1 KKICVVTGTRA---D----YGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAG 73 (365)
T ss_pred CeEEEEEecCh---h----HHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCC
Confidence 68999986533 1 22467788888874 7888888766543321 111111 1 112211111 111
Q ss_pred ------------cccCCCCCCcEEEecCCc------hhHHhhhcCCcEEEEecch-hHHHHhhhhhhhhhhcCCCCCCCc
Q 044542 148 ------------VNLNNDGAFDYVHTESVS------LPHWRAKMVPNVAVTWHGI-WYEVMHSKLFGELFSNQNGVLPGS 208 (465)
Q Consensus 148 ------------~~~~~~~~~DiI~~~~~~------~~~~~~~~~p~~v~~~h~~-~~~~~~~~~~~~~~~~~~~~~~~~ 208 (465)
.....+.+||+|++++.. .......++| ++ .+|+- ... +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IP-v~-HveaG~rs~-------------------~- 131 (365)
T TIGR03568 74 MAKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIP-IA-HIHGGEVTE-------------------G- 131 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCc-EE-EEECCccCC-------------------C-
Confidence 011177899999998742 3333445778 44 44432 100 0
Q ss_pred hhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCC-CCCCCccCCcccCcccccccCCCCCCc
Q 044542 209 MTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNG-VDETKFVHDPEAGVRFPEKLGVPANVS 287 (465)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ng-vd~~~~~~~~~~~~~~r~~~g~~~~~~ 287 (465)
.......+.. -+-++..++.++..++.+.+ -|.++.++.++.|. +|.-.... ......+.+++|++.+++
T Consensus 132 --~~eE~~r~~i-----~~la~l~f~~t~~~~~~L~~-eg~~~~~i~~tG~~~iD~l~~~~-~~~~~~~~~~lgl~~~~~ 202 (365)
T TIGR03568 132 --AIDESIRHAI-----TKLSHLHFVATEEYRQRVIQ-MGEDPDRVFNVGSPGLDNILSLD-LLSKEELEEKLGIDLDKP 202 (365)
T ss_pred --CchHHHHHHH-----HHHHhhccCCCHHHHHHHHH-cCCCCCcEEEECCcHHHHHHhhh-ccCHHHHHHHhCCCCCCC
Confidence 0001111111 13345667788888888877 58888899988774 44322211 112356677888865444
Q ss_pred EEEEEeeccc--cccCHHHHHHHHHHhhhcCCCeEEEEEeCCc-c---hhHHHHh---cCCeEEcCCCChhHHHHHHHhc
Q 044542 288 LVMGVAGRLV--RDKGHPLLYEAFSSITRDHPGVYLLVAGTGP-W---GRRYAEL---GQNVKVLGALEAHQLSEFYNAL 358 (465)
Q Consensus 288 ~~l~~~Grl~--~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~-~---~~~~~~l---~~~V~~~g~v~~~~~~~~~~~a 358 (465)
++++.+-+-. .....+.+.+.++.+.+...++.++.-..++ . .+.++++ .++|.+++.++..++..+++.|
T Consensus 203 ~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a 282 (365)
T TIGR03568 203 YALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNA 282 (365)
T ss_pred EEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhC
Confidence 6655554432 3333344444444444332344332211222 1 2334443 2689999999999999999999
Q ss_pred CeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 044542 359 DVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKE 438 (465)
Q Consensus 359 Dv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~ 438 (465)
|++|-.|. - .+-||.++|+|+|+- +.-+ +.+..+.+.+++..|++++.+++.+++ + ++.++.+ .
T Consensus 283 ~~vitdSS----g--gi~EA~~lg~Pvv~l--~~R~-e~~~~g~nvl~vg~~~~~I~~a~~~~~-~-~~~~~~~-----~ 346 (365)
T TIGR03568 283 DAVIGNSS----S--GIIEAPSFGVPTINI--GTRQ-KGRLRADSVIDVDPDKEEIVKAIEKLL-D-PAFKKSL-----K 346 (365)
T ss_pred CEEEEcCh----h--HHHhhhhcCCCEEee--cCCc-hhhhhcCeEEEeCCCHHHHHHHHHHHh-C-hHHHHHH-----h
Confidence 99996431 2 338999999999964 3444 667777788878669999999999954 4 3332222 1
Q ss_pred HHHhhCCHHHHHHHHHHH
Q 044542 439 HALSMFTATKMASAYERF 456 (465)
Q Consensus 439 ~~~~~fs~~~~~~~~~~~ 456 (465)
....-|...+.++++.++
T Consensus 347 ~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 347 NVKNPYGDGNSSERIIEI 364 (365)
T ss_pred hCCCCCCCChHHHHHHHh
Confidence 122335555555555543
No 111
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.34 E-value=4.2e-10 Score=109.00 Aligned_cols=207 Identities=12% Similarity=0.046 Sum_probs=133.0
Q ss_pred hcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeecccc--ccCHH
Q 044542 226 FSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVR--DKGHP 303 (465)
Q Consensus 226 ~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~--~Kg~~ 303 (465)
-+.|+.+.+..+...+.+.+ .| .++.++.|++-........ . +++++.+.++++.|+-.. .+++.
T Consensus 158 ~~~a~~v~~~~~~t~~~l~~-~g---~k~~~vGnPv~d~l~~~~~-------~--~l~~~~~~lllLpGSR~ae~~~~lp 224 (396)
T TIGR03492 158 SRRCLAVFVRDRLTARDLRR-QG---VRASYLGNPMMDGLEPPER-------K--PLLTGRFRIALLPGSRPPEAYRNLK 224 (396)
T ss_pred chhhCEEeCCCHHHHHHHHH-CC---CeEEEeCcCHHhcCccccc-------c--ccCCCCCEEEEECCCCHHHHHccHH
Confidence 36778888888888888876 45 3889999987443221110 0 444455466666676533 56778
Q ss_pred HHHHHHHHhhhcCCCeEEEEEe-CCcchhHHHH-h---c----------------CCeEEcCCCChhHHHHHHHhcCeEE
Q 044542 304 LLYEAFSSITRDHPGVYLLVAG-TGPWGRRYAE-L---G----------------QNVKVLGALEAHQLSEFYNALDVFV 362 (465)
Q Consensus 304 ~ll~a~~~l~~~~~~~~l~ivG-~g~~~~~~~~-l---~----------------~~V~~~g~v~~~~~~~~~~~aDv~v 362 (465)
.+++++..+.++ +++.+++.- .+...+.+++ + + +++.+..+. .++.++|+.||++|
T Consensus 225 ~~l~al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~ADlvI 301 (396)
T TIGR03492 225 LLLRALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGR--GAFAEILHWADLGI 301 (396)
T ss_pred HHHHHHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEech--HhHHHHHHhCCEEE
Confidence 999999999766 677776543 3333333322 1 2 125555554 68999999999999
Q ss_pred ecccCCCCCcHHHHHHHHcCCeEEecCCCCcce--eeeeeC----CceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHH
Q 044542 363 NPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR--TVVVNE----ELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLA 435 (465)
Q Consensus 363 ~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~--e~v~~~----~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~ 435 (465)
..| |.+..|++++|+|+|....++... .+.... ..+..+.. +++.+++++.++++| ++.+++|.++
T Consensus 302 ~rS------Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d-~~~~~~~~~~ 374 (396)
T TIGR03492 302 AMA------GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLAD-PELLERCRRN 374 (396)
T ss_pred ECc------CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence 854 246699999999999987433210 111110 23444444 899999999999998 8888888755
Q ss_pred HHHHHHhhCCHHHHHHHHHH
Q 044542 436 CKEHALSMFTATKMASAYER 455 (465)
Q Consensus 436 ~~~~~~~~fs~~~~~~~~~~ 455 (465)
+++...+....+.+++.+.+
T Consensus 375 ~~~~lg~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 375 GQERMGPPGASARIAESILK 394 (396)
T ss_pred HHHhcCCCCHHHHHHHHHHH
Confidence 55554443455555554443
No 112
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.5e-10 Score=109.13 Aligned_cols=337 Identities=16% Similarity=0.154 Sum_probs=205.0
Q ss_pred CCCCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCc--ccCCcceEEEeec-CC-Cccc
Q 044542 74 GPTFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHND--VHQGNLHVHFAAN-DH-GSVN 149 (465)
Q Consensus 74 ~~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~~~v~~~~~-~~-~~~~ 149 (465)
....+++||+++++.+ .....+.....+.+.+.+..+||..+.......+... +......+.-... .. ..-.
T Consensus 254 ~~~~~rlRvGylS~dl----r~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~ 329 (620)
T COG3914 254 KRNGKRLRVGYLSSDL----RSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPIGRMDDAEIAN 329 (620)
T ss_pred cccccceeEEEecccc----ccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheeccCCcCHHHHHH
Confidence 3456788999999986 4456667788888888887789888887733332221 1211111111110 00 0011
Q ss_pred cCCCCCCcEEEecCC----chhHHhhh-cCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHH
Q 044542 150 LNNDGAFDYVHTESV----SLPHWRAK-MVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIR 224 (465)
Q Consensus 150 ~~~~~~~DiI~~~~~----~~~~~~~~-~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (465)
.+...+.||.+--+. .-...++. --| +.++|-|.+..... + . .
T Consensus 330 ~I~~d~IdILvDl~g~T~d~r~~v~A~RpAP-iqvswlGy~aT~g~---------------p----~------------~ 377 (620)
T COG3914 330 AIRTDGIDILVDLDGHTVDTRCQVFAHRPAP-IQVSWLGYPATTGS---------------P----N------------M 377 (620)
T ss_pred HHHhcCCeEEEeccCceeccchhhhhcCCCc-eEEeecccccccCC---------------C----c------------c
Confidence 115667888764321 12222222 235 88888875421000 0 0 0
Q ss_pred hhcccCEEEEeChhHHHHHHHHh-CCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHH
Q 044542 225 FFSSYNQHICISNSAAEVLVKIY-QLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHP 303 (465)
Q Consensus 225 ~~~~~d~ii~~S~~~~~~~~~~~-~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~ 303 (465)
-+--+|..+.+ +...+++.+.. .+| -.+-++| .+.+... .--|..+|+|++. ++++++++ ..|-..
T Consensus 378 DY~I~D~y~vP-p~ae~yysEkl~RLp-----~cy~p~d--~~~~v~p--~~sR~~lglp~~a-vVf~c~~n--~~K~~p 444 (620)
T COG3914 378 DYFISDPYTVP-PTAEEYYSEKLWRLP-----QCYQPVD--GFEPVTP--PPSRAQLGLPEDA-VVFCCFNN--YFKITP 444 (620)
T ss_pred eEEeeCceecC-chHHHHHHHHHHhcc-----cccCCCC--CcccCCC--CcchhhcCCCCCe-EEEEecCC--cccCCH
Confidence 01112333444 66666666542 222 1122333 3333222 2457889999987 67666654 578888
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCcchh---HHHHh----c---CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcH
Q 044542 304 LLYEAFSSITRDHPGVYLLVAGTGPWGR---RYAEL----G---QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDL 373 (465)
Q Consensus 304 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~---~~~~l----~---~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~ 373 (465)
.+++.+.++.+..|+-.|++.|.|+..+ .++++ + ++.+|.+..+.++..+.|..||+++-+.. -|-..
T Consensus 445 ev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyP--Y~g~T 522 (620)
T COG3914 445 EVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYP--YGGHT 522 (620)
T ss_pred HHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeeccc--CCCcc
Confidence 8888888888888999999998875543 23332 2 89999999999999999999999998653 46678
Q ss_pred HHHHHHHcCCeEEecCCCCcc----eeeeeeCC-ceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh--hCCH
Q 044542 374 TLIEAMHCGRTVLTPNYPSIV----RTVVVNEE-LGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALS--MFTA 446 (465)
Q Consensus 374 ~~~EAma~G~PvI~s~~gg~~----~e~v~~~~-~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~--~fs~ 446 (465)
+.+||+.+|+|||+--..... +.++.+-+ .-+++. +.++.++.-..+-.+ ...+++.+..-++.... -|+.
T Consensus 523 Ta~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~-s~~dYV~~av~~g~d-ral~q~~r~~l~~~r~tspL~d~ 600 (620)
T COG3914 523 TASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVAD-SRADYVEKAVAFGSD-RALRQQVRAELKRSRQTSPLFDP 600 (620)
T ss_pred chHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcC-CHHHHHHHHHHhccc-HHHHHhhHHHHHhccccCcccCH
Confidence 999999999999974211111 02222222 223333 777887777777777 65666665544444433 5899
Q ss_pred HHHHHHHHHHHHHhcCC
Q 044542 447 TKMASAYERFFLRMKNP 463 (465)
Q Consensus 447 ~~~~~~~~~~~~~~~~~ 463 (465)
+..+++++++|.++.++
T Consensus 601 ~~far~le~~y~~M~~~ 617 (620)
T COG3914 601 KAFARKLETLYWGMWSE 617 (620)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 113
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=1e-09 Score=101.37 Aligned_cols=338 Identities=15% Similarity=0.127 Sum_probs=206.3
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCC-cEEEEEeCCCCCCCCC-----cc-cCCcceEEEeecCCC-cc
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARG-HEIHVFTAPSDRKPHN-----DV-HQGNLHVHFAANDHG-SV 148 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~-----~~-~~~~~~v~~~~~~~~-~~ 148 (465)
+.+|||++|...-| -..-+..+++++.+.+ .+..|+.......... +. ....+....--...+ ..
T Consensus 1 m~~~Kv~~I~GTRP-------E~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl 73 (383)
T COG0381 1 MKMLKVLTIFGTRP-------EAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTL 73 (383)
T ss_pred CCceEEEEEEecCH-------HHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCH
Confidence 35789999986543 2345778899999886 7777776665442111 11 111122222222111 11
Q ss_pred ------------ccCCCCCCcEEEecCC---chh---HHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchh
Q 044542 149 ------------NLNNDGAFDYVHTESV---SLP---HWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMT 210 (465)
Q Consensus 149 ------------~~~~~~~~DiI~~~~~---~~~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (465)
....+.+||+|.+|+- .+. .....++| +...--|....... +..
T Consensus 74 ~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~Ip-V~HvEAGlRt~~~~--~PE--------------- 135 (383)
T COG0381 74 GEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIP-VGHVEAGLRTGDLY--FPE--------------- 135 (383)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCc-eEEEecccccCCCC--CcH---------------
Confidence 1117899999999964 222 23345677 66555554321000 000
Q ss_pred hhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccC-C-cccCcccccc-cCCCCCCc
Q 044542 211 ELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVH-D-PEAGVRFPEK-LGVPANVS 287 (465)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~-~-~~~~~~~r~~-~g~~~~~~ 287 (465)
.+.+.+ .-.-++..+++++..++.+.+ -|++++++.++.|.+-...... . .........+ ++.. +++
T Consensus 136 E~NR~l--------~~~~S~~hfapte~ar~nLl~-EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~-~~~ 205 (383)
T COG0381 136 EINRRL--------TSHLSDLHFAPTEIARKNLLR-EGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDK-DKK 205 (383)
T ss_pred HHHHHH--------HHHhhhhhcCChHHHHHHHHH-cCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccc-cCc
Confidence 111111 113456679999999999988 5999999999999753211111 0 1101111211 2322 333
Q ss_pred EEEEEeeccccc-cCHHHHHHHHHHhhhcCCCeEEEEEeCCc--chhH-HHHhc--CCeEEcCCCChhHHHHHHHhcCeE
Q 044542 288 LVMGVAGRLVRD-KGHPLLYEAFSSITRDHPGVYLLVAGTGP--WGRR-YAELG--QNVKVLGALEAHQLSEFYNALDVF 361 (465)
Q Consensus 288 ~~l~~~Grl~~~-Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~--~~~~-~~~l~--~~V~~~g~v~~~~~~~~~~~aDv~ 361 (465)
++++.+-|.... +++..+.+++.++.++++++.++.--... .++. .+.|+ ++|.++..+...+...+++.|-+.
T Consensus 206 ~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~i 285 (383)
T COG0381 206 YILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLI 285 (383)
T ss_pred EEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEE
Confidence 777677666553 89999999999999988777766654322 1222 24455 679999999999999999999777
Q ss_pred EecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 044542 362 VNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHAL 441 (465)
Q Consensus 362 v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 441 (465)
+--| |...=||-..|+||++-+...-+.|.+..| .-.++..+.+.+.+++..++++ ++.+++|+...--+..
T Consensus 286 ltDS------GgiqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg~~~~~i~~~~~~ll~~-~~~~~~m~~~~npYgd 357 (383)
T COG0381 286 LTDS------GGIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVGTDEENILDAATELLED-EEFYERMSNAKNPYGD 357 (383)
T ss_pred EecC------CchhhhHHhcCCcEEeeccCCCCccceecC-ceEEeCccHHHHHHHHHHHhhC-hHHHHHHhcccCCCcC
Confidence 7533 337889999999999877665554655444 4555555999999999999999 7888888765433333
Q ss_pred hhCCHHHHHHHHHHHHH
Q 044542 442 SMFTATKMASAYERFFL 458 (465)
Q Consensus 442 ~~fs~~~~~~~~~~~~~ 458 (465)
.+ +.+++++.+...+.
T Consensus 358 g~-as~rIv~~l~~~~~ 373 (383)
T COG0381 358 GN-ASERIVEILLNYFD 373 (383)
T ss_pred cc-hHHHHHHHHHHHhh
Confidence 32 44555554444443
No 114
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.20 E-value=1.2e-09 Score=100.91 Aligned_cols=248 Identities=15% Similarity=0.087 Sum_probs=141.9
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCC-------ccccCCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHG-------SVNLNND 153 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~ 153 (465)
||+|.+..-+ ....|.-.+...||++|.++|++|.+++..........+...+..+........ .....++
T Consensus 1 ~i~ir~Da~~--~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~ 78 (279)
T TIGR03590 1 KILFRADASS--EIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEE 78 (279)
T ss_pred CEEEEecCCc--cccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHh
Confidence 5778877643 233466678999999999999999999987644322222223333333322211 1122256
Q ss_pred CCCcEEEecCCchhH----HhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhccc
Q 044542 154 GAFDYVHTESVSLPH----WRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSY 229 (465)
Q Consensus 154 ~~~DiI~~~~~~~~~----~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (465)
.+||+|++.++.+.. .++...+ .+..+-|.... -..+
T Consensus 79 ~~~d~vV~D~y~~~~~~~~~~k~~~~-~l~~iDD~~~~--------------------------------------~~~~ 119 (279)
T TIGR03590 79 EKFDILIVDHYGLDADWEKLIKEFGR-KILVIDDLADR--------------------------------------PHDC 119 (279)
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHhCC-eEEEEecCCCC--------------------------------------CcCC
Confidence 689999998764322 2222334 44455543100 0145
Q ss_pred CEEEEeChhHHHHHHHHhC-CCCCCEEEecC---CCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHH
Q 044542 230 NQHICISNSAAEVLVKIYQ-LPQRNVHVILN---GVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLL 305 (465)
Q Consensus 230 d~ii~~S~~~~~~~~~~~~-~~~~ki~vi~n---gvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~l 305 (465)
|.++..+.. .+... +.+ +++........ .+..++....+. ...+ .+.+-+++++|...+.+....+
T Consensus 120 D~vin~~~~-~~~~~-y~~~~~~~~~~l~G~~Y~~lr~eF~~~~~~---~~~~-----~~~~~iLi~~GG~d~~~~~~~~ 189 (279)
T TIGR03590 120 DLLLDQNLG-ADASD-YQGLVPANCRLLLGPSYALLREEFYQLATA---NKRR-----KPLRRVLVSFGGADPDNLTLKL 189 (279)
T ss_pred CEEEeCCCC-cCHhH-hcccCcCCCeEEecchHHhhhHHHHHhhHh---hhcc-----cccCeEEEEeCCcCCcCHHHHH
Confidence 766666554 22222 122 34343333322 122221111110 0000 0123466688887777766778
Q ss_pred HHHHHHhhhcCCCeE-EEEEeCC-cchhHHHHhc---CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHH
Q 044542 306 YEAFSSITRDHPGVY-LLVAGTG-PWGRRYAELG---QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMH 380 (465)
Q Consensus 306 l~a~~~l~~~~~~~~-l~ivG~g-~~~~~~~~l~---~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma 380 (465)
++++..+. ++++ .+++|.+ +..+.+++.. .++.+.+++ +++.++|+.||++|.+ .|.++.|+++
T Consensus 190 l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~--~~m~~lm~~aDl~Is~------~G~T~~E~~a 258 (279)
T TIGR03590 190 LSALAESQ---INISITLVTGSSNPNLDELKKFAKEYPNIILFIDV--ENMAELMNEADLAIGA------AGSTSWERCC 258 (279)
T ss_pred HHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCH--HHHHHHHHHCCEEEEC------CchHHHHHHH
Confidence 88887653 2333 3366765 3444444432 689999998 7999999999999973 2369999999
Q ss_pred cCCeEEecCC
Q 044542 381 CGRTVLTPNY 390 (465)
Q Consensus 381 ~G~PvI~s~~ 390 (465)
+|+|+|+...
T Consensus 259 ~g~P~i~i~~ 268 (279)
T TIGR03590 259 LGLPSLAICL 268 (279)
T ss_pred cCCCEEEEEe
Confidence 9999998654
No 115
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.17 E-value=3.4e-09 Score=97.07 Aligned_cols=327 Identities=15% Similarity=0.124 Sum_probs=202.4
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC-cc-cCCcceEEEeecCCC--ccccCCCCCCcEEEecCC-----
Q 044542 94 APGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN-DV-HQGNLHVHFAANDHG--SVNLNNDGAFDYVHTESV----- 164 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~-~~~~~~v~~~~~~~~--~~~~~~~~~~DiI~~~~~----- 164 (465)
..+|...+...+.++|...||++..+-+........ +. ...+....+...... .....+..++|+|.....
T Consensus 12 y~~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k~rd~~~~~~~~~~~~~~~~e~~~~~~i~~fk~d~iv~~~~~~~~~ 91 (373)
T COG4641 12 YNNGSAEYYRGLLRALKMDGMKVLFLESGDFWDYKNRDIDAEDGCTEAFYKDQPELESLLYIREFKPDIIVNMSGDDQPD 91 (373)
T ss_pred hcCCchhhHHHHHHHHHhccceEEEEecccHHhhhcccccCccchhheeecCcHHHHHHHHHHhcCCcEEEEeccccccc
Confidence 457778888999999999999999998887554433 22 122222222211111 111227889999987643
Q ss_pred -----chhHHhhh-cCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChh
Q 044542 165 -----SLPHWRAK-MVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNS 238 (465)
Q Consensus 165 -----~~~~~~~~-~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~ 238 (465)
.+..|+.. .+| +++..-+.+......... ....+. ++.+-..|.|++.+..
T Consensus 92 ~~~~~~~~a~l~~~~l~-~~~w~te~p~~~~~~~~~---------------------~~~~~~-~~~l~~fd~v~~~g~~ 148 (373)
T COG4641 92 EESTIDLWAWLKRKCLP-VIVWYTEDPYDTDIFSQV---------------------AEEQLA-RRPLFIFDNVLSFGGG 148 (373)
T ss_pred ceehHHHHHHhhcCCcc-eEEEEeccchhhhhhhhh---------------------hHHHhh-ccccchhhhhhhccch
Confidence 13333332 445 555555444332211111 111110 0122233445666665
Q ss_pred H-HHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCC
Q 044542 239 A-AEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHP 317 (465)
Q Consensus 239 ~-~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~ 317 (465)
. ++.+.+..+ ..++..++.++|...|.+-+.+. ....-+.++|...+. ..+.+-+.+.+-..+..
T Consensus 149 l~~~~yyq~~~--~~~~~~~~~a~d~~~~~~i~~da-----------~~~~dL~~ign~~pD-r~e~~ke~~~~ps~kl~ 214 (373)
T COG4641 149 LVANKYYQEGG--ARNCYYLPWAVDDSLFHPIPPDA-----------SYDVDLNLIGNPYPD-RVEEIKEFFVEPSFKLM 214 (373)
T ss_pred HHHHHHHHhhc--ccceeccCccCCchhcccCCccc-----------cceeeeEEecCCCcc-HHHHHHHHhhccchhhh
Confidence 5 455543333 47889999999999887755321 111356678876654 22233333322111111
Q ss_pred -CeEEEEEeCCcchhHHHH-hcCCeEEcCCCCh-hHHHHHHHhcCeEEecccC--CCC---CcHHHHHHHHcCCeEEecC
Q 044542 318 -GVYLLVAGTGPWGRRYAE-LGQNVKVLGALEA-HQLSEFYNALDVFVNPTLR--PQG---LDLTLIEAMHCGRTVLTPN 389 (465)
Q Consensus 318 -~~~l~ivG~g~~~~~~~~-l~~~V~~~g~v~~-~~~~~~~~~aDv~v~ps~~--~eg---~~~~~~EAma~G~PvI~s~ 389 (465)
+-++...|..-....... ..+++..+|+++. ..+...++..|+.++-+.. .++ +.+-+.|+++||.|.|+..
T Consensus 215 v~rr~~~~g~~y~~~~~~~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~ 294 (373)
T COG4641 215 VDRRFYVLGPRYPDDIWGRTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDY 294 (373)
T ss_pred ccceeeecCCccchhhhcccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCcccccc
Confidence 244666665411111111 2268888998866 8899999999999884321 122 3789999999999999988
Q ss_pred CCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 390 YPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 390 ~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
..+.. ....+|+.-++.. |.+++.+++..++.. ++.++++++.+++++...|+.+.-+..+.+....+
T Consensus 295 ~~~~e-~~f~pgk~~iv~~-d~kdl~~~~~yll~h-~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~sI 362 (373)
T COG4641 295 WKDLE-KFFKPGKDIIVYQ-DSKDLKEKLKYLLNH-PDERKEIAECAYERVLARHTYEERIFKLLNEIASI 362 (373)
T ss_pred HHHHH-HhcCCchheEEec-CHHHHHHHHHHHhcC-cchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Confidence 87775 5666666544444 999999999999999 88999999999999999999999998888777654
No 116
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.16 E-value=2.2e-09 Score=90.57 Aligned_cols=157 Identities=16% Similarity=0.195 Sum_probs=103.0
Q ss_pred eEEEEeC-CCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecC-CCccccC-------
Q 044542 81 KLAVFSK-TWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAAND-HGSVNLN------- 151 (465)
Q Consensus 81 kIl~v~~-~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~------- 151 (465)
||+++.. ..| +..||.|+++.+|+..|.++||+|+|+|......... ....+..+...+.. .+.....
T Consensus 3 kIaIiGtrGIP--a~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~-~~y~gv~l~~i~~~~~g~~~si~yd~~sl 79 (185)
T PF09314_consen 3 KIAIIGTRGIP--ARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE-FEYNGVRLVYIPAPKNGSAESIIYDFLSL 79 (185)
T ss_pred eEEEEeCCCCC--cccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC-cccCCeEEEEeCCCCCCchHHHHHHHHHH
Confidence 7999976 577 6899999999999999999999999999876543332 22233333333222 2211111
Q ss_pred ---------CCCCCcEEEecCCch---h-HHhh----hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhh
Q 044542 152 ---------NDGAFDYVHTESVSL---P-HWRA----KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQE 214 (465)
Q Consensus 152 ---------~~~~~DiI~~~~~~~---~-~~~~----~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (465)
.+.+.|+++++.... . .+.. .+.+ +++..||.... .. .+. ...+
T Consensus 80 ~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~-v~vN~DGlEWk---R~--------------KW~-~~~k 140 (185)
T PF09314_consen 80 LHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGK-VVVNMDGLEWK---RA--------------KWG-RPAK 140 (185)
T ss_pred HHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCc-EEECCCcchhh---hh--------------hcC-HHHH
Confidence 234688999887542 1 1221 1335 89999987532 00 111 1111
Q ss_pred hhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCC
Q 044542 215 AMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVD 262 (465)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd 262 (465)
... .+.|+...+.+|.+|+.|+.+.+++++.|+ ..++.+|++|.|
T Consensus 141 ~~l-k~~E~~avk~ad~lIaDs~~I~~y~~~~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 141 KYL-KFSEKLAVKYADRLIADSKGIQDYIKERYG--RKKSTFIAYGAD 185 (185)
T ss_pred HHH-HHHHHHHHHhCCEEEEcCHHHHHHHHHHcC--CCCcEEecCCCC
Confidence 111 233456679999999999999999999987 578899999976
No 117
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.16 E-value=1.1e-09 Score=105.33 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=121.4
Q ss_pred cccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcc-hh----HHHHhc---CCeEEcCC
Q 044542 274 VRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPW-GR----RYAELG---QNVKVLGA 345 (465)
Q Consensus 274 ~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~----~~~~l~---~~V~~~g~ 345 (465)
...|+.+|+|++. ++++++.++ .|=-+..++++.++.+..|+.+|++...+.. ++ .+++.+ +++.|.+.
T Consensus 273 ~~~R~~~gLp~d~-vvF~~fn~~--~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~ 349 (468)
T PF13844_consen 273 VTTRAQYGLPEDA-VVFGSFNNL--FKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPV 349 (468)
T ss_dssp EEETGGGT--SSS-EEEEE-S-G--GG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE-
T ss_pred ccCHHHcCCCCCc-eEEEecCcc--ccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCC
Confidence 3578899999887 777666654 6777888999999999999999988764432 22 233344 89999999
Q ss_pred CChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce----eeeeeCCceEEeCCCHHHHHHHHHHH
Q 044542 346 LEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR----TVVVNEELGYTFSPNVKSFVEALELV 421 (465)
Q Consensus 346 v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~----e~v~~~~~G~l~~~d~~~la~~i~~l 421 (465)
.+.++....|+.+|+++-+-.+ +-+++.+||+.+|+|||+-......+ .++..-+..-++..|.+++++.-.++
T Consensus 350 ~~~~ehl~~~~~~DI~LDT~p~--nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~L 427 (468)
T PF13844_consen 350 APREEHLRRYQLADICLDTFPY--NGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRL 427 (468)
T ss_dssp --HHHHHHHGGG-SEEE--SSS----SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHH
T ss_pred CCHHHHHHHhhhCCEEeeCCCC--CCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHH
Confidence 9888998999999999997544 55789999999999999976544441 11111111223334899999999999
Q ss_pred HhCChHHHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHh
Q 044542 422 IRDGPKVLQRKGLACKEHALS--MFTATKMASAYERFFLRM 460 (465)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~~~~~~ 460 (465)
..| ++.+++++++-++...+ -|+....++.+++.|+++
T Consensus 428 a~D-~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 428 ATD-PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp HH--HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred hCC-HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 999 99999999988877644 489999999999999875
No 118
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.15 E-value=3.5e-09 Score=103.91 Aligned_cols=151 Identities=19% Similarity=0.164 Sum_probs=93.7
Q ss_pred CCcEEEEEeecccc---ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeE
Q 044542 285 NVSLVMGVAGRLVR---DKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVF 361 (465)
Q Consensus 285 ~~~~~l~~~Grl~~---~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~ 361 (465)
+++.+++..|.... .+-...+++++..+ +.-.++.+|...... ..+.++|.+.+++|.. .++..||++
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~----~~~~i~~~g~~~~~~--~~~~~~v~~~~~~p~~---~ll~~~d~~ 308 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATL----GQRAILSLGWGGLGA--EDLPDNVRVVDFVPHD---WLLPRCAAV 308 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc----CCeEEEEccCccccc--cCCCCceEEeCCCCHH---HHhhhhhee
Confidence 44567777888753 23334455555543 222345566543322 3345899999998644 568889999
Q ss_pred EecccCCCCCcHHHHHHHHcCCeEEecCCCCc----ceeeeeeCCceEEeCC---CHHHHHHHHHHHHhCChHHHHHHHH
Q 044542 362 VNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSI----VRTVVVNEELGYTFSP---NVKSFVEALELVIRDGPKVLQRKGL 434 (465)
Q Consensus 362 v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~----~~e~v~~~~~G~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~ 434 (465)
|. + .| ..++.||+++|+|+|+....+- . +.+.+.+.|..+.. +++++.+++.+++++ + .+++..+
T Consensus 309 I~---h-gG-~~t~~eal~~GvP~v~~P~~~dQ~~~a-~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~-~-~~~~~~~ 380 (401)
T cd03784 309 VH---H-GG-AGTTAAALRAGVPQLVVPFFGDQPFWA-ARVAELGAGPALDPRELTAERLAAALRRLLDP-P-SRRRAAA 380 (401)
T ss_pred ee---c-CC-chhHHHHHHcCCCEEeeCCCCCcHHHH-HHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH-H-HHHHHHH
Confidence 96 2 23 4699999999999999876542 2 23445566777654 689999999999985 3 3444443
Q ss_pred HHHHHHHhhCCHHHHHHHH
Q 044542 435 ACKEHALSMFTATKMASAY 453 (465)
Q Consensus 435 ~~~~~~~~~fs~~~~~~~~ 453 (465)
.+++. ++.-..+..++.+
T Consensus 381 ~~~~~-~~~~g~~~~~~~i 398 (401)
T cd03784 381 LLRRI-REEDGVPSAADVI 398 (401)
T ss_pred HHHHH-HhccCHHHHHHHH
Confidence 33332 2223444444443
No 119
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=3.2e-09 Score=97.87 Aligned_cols=330 Identities=13% Similarity=0.063 Sum_probs=189.7
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCC--cce------EEEeecCCCcc--
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQG--NLH------VHFAANDHGSV-- 148 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~--~~~------v~~~~~~~~~~-- 148 (465)
+|||++++.+- +| ...-..|.++|+++=-++.++...+......-.... ... +......+..+
T Consensus 1 ~~ki~i~AGE~------SG-DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~ 73 (381)
T COG0763 1 MLKIALSAGEA------SG-DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKI 73 (381)
T ss_pred CceEEEEeccc------ch-hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHH
Confidence 36899998752 33 455668999998872277777766533221100000 000 00000000111
Q ss_pred -----ccCCCCCCcEEEecCC-c----hhHHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHH
Q 044542 149 -----NLNNDGAFDYVHTESV-S----LPHWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPR 218 (465)
Q Consensus 149 -----~~~~~~~~DiI~~~~~-~----~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (465)
+.....+||++++-++ . +...+.+..| .+-++|-..+. ...|-.++..
T Consensus 74 ~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p-~i~iihYV~Ps--------------------VWAWr~~Ra~- 131 (381)
T COG0763 74 RRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGP-KIKIIHYVSPS--------------------VWAWRPKRAV- 131 (381)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCC-CCCeEEEECcc--------------------eeeechhhHH-
Confidence 1115789999887653 2 3334444444 23333322110 0001111111
Q ss_pred HHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeecccc
Q 044542 219 LVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVR 298 (465)
Q Consensus 219 ~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~ 298 (465)
...+.+|+++++=+...+.+.+ +|++ ++.|.|+.-.+. +...++...|+++|++.+.+.+.+..|+-..
T Consensus 132 -----~i~~~~D~lLailPFE~~~y~k-~g~~---~~yVGHpl~d~i--~~~~~r~~ar~~l~~~~~~~~lalLPGSR~s 200 (381)
T COG0763 132 -----KIAKYVDHLLAILPFEPAFYDK-FGLP---CTYVGHPLADEI--PLLPDREAAREKLGIDADEKTLALLPGSRRS 200 (381)
T ss_pred -----HHHHHhhHeeeecCCCHHHHHh-cCCC---eEEeCChhhhhc--cccccHHHHHHHhCCCCCCCeEEEecCCcHH
Confidence 3456789999999999999988 6754 677777653222 2223345689999999998888888886433
Q ss_pred --ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh--cCCe-EEcCCCChhHHHHHHHhcCeEEecccCCCCCcH
Q 044542 299 --DKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL--GQNV-KVLGALEAHQLSEFYNALDVFVNPTLRPQGLDL 373 (465)
Q Consensus 299 --~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l--~~~V-~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~ 373 (465)
.+-...+.+|++.+++++|+.++++--.....+.++.. ...+ ...-.+.+.+-.+.+.+||+.+..| |+
T Consensus 201 EI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aS------GT 274 (381)
T COG0763 201 EIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAAS------GT 274 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhc------cH
Confidence 46677889999999999999999997765443333222 1111 1222234468889999999998754 56
Q ss_pred HHHHHHHcCCeEEec-CCC----------------CcceeeeeeCC-ceEEe-CC-CHHHHHHHHHHHHhCChHHHHHHH
Q 044542 374 TLIEAMHCGRTVLTP-NYP----------------SIVRTVVVNEE-LGYTF-SP-NVKSFVEALELVIRDGPKVLQRKG 433 (465)
Q Consensus 374 ~~~EAma~G~PvI~s-~~g----------------g~~~e~v~~~~-~G~l~-~~-d~~~la~~i~~ll~~~~~~~~~~~ 433 (465)
+.+|++.+|+|.|++ +.. +.+ .++.+.. .--++ +. .++.+++++..++.| .+.++++.
T Consensus 275 ~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLp-NIi~~~~ivPEliq~~~~pe~la~~l~~ll~~-~~~~~~~~ 352 (381)
T COG0763 275 ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLP-NILAGREIVPELIQEDCTPENLARALEELLLN-GDRREALK 352 (381)
T ss_pred HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccch-HHhcCCccchHHHhhhcCHHHHHHHHHHHhcC-hHhHHHHH
Confidence 999999999999864 322 222 2222211 00011 12 699999999999999 54444444
Q ss_pred HH---HHHHHHhhCCHHHHHHHHHHH
Q 044542 434 LA---CKEHALSMFTATKMASAYERF 456 (465)
Q Consensus 434 ~~---~~~~~~~~fs~~~~~~~~~~~ 456 (465)
+. -++.+......+..++.+.++
T Consensus 353 ~~~~~l~~~l~~~~~~e~aA~~vl~~ 378 (381)
T COG0763 353 EKFRELHQYLREDPASEIAAQAVLEL 378 (381)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 43 333343433344444444443
No 120
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.06 E-value=1.6e-08 Score=94.38 Aligned_cols=283 Identities=13% Similarity=0.102 Sum_probs=162.6
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecC-CCccccC-------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAAND-HGSVNLN------- 151 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~------- 151 (465)
|||++-... | ..-.+...+++.|.++||+|.+.+......... +...+......... .......
T Consensus 1 MkIwiDi~~-p------~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~L-L~~yg~~y~~iG~~g~~~~~Kl~~~~~R~ 72 (335)
T PF04007_consen 1 MKIWIDITH-P------AHVHFFKNIIRELEKRGHEVLITARDKDETEEL-LDLYGIDYIVIGKHGDSLYGKLLESIERQ 72 (335)
T ss_pred CeEEEECCC-c------hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHH-HHHcCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 788887664 1 235678899999999999999998876432111 11122222222111 1111111
Q ss_pred -------CCCCCcEEEecCCchh--HHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHH
Q 044542 152 -------NDGAFDYVHTESVSLP--HWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDE 222 (465)
Q Consensus 152 -------~~~~~DiI~~~~~~~~--~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (465)
++.+||++++.+.... .....++| .+....+-... . . .+
T Consensus 73 ~~l~~~~~~~~pDv~is~~s~~a~~va~~lgiP-~I~f~D~e~a~-~-----------------------~---~~---- 120 (335)
T PF04007_consen 73 YKLLKLIKKFKPDVAISFGSPEAARVAFGLGIP-SIVFNDTEHAI-A-----------------------Q---NR---- 120 (335)
T ss_pred HHHHHHHHhhCCCEEEecCcHHHHHHHHHhCCC-eEEEecCchhh-c-----------------------c---ce----
Confidence 6789999998765333 33445678 55555431110 0 0 00
Q ss_pred HHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccc---
Q 044542 223 IRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRD--- 299 (465)
Q Consensus 223 ~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~--- 299 (465)
..+.-++.++++.-.-.+.+.+ +|.. +++ .-+||++...+-..-.....+.+++|++++ +++++ |..+.
T Consensus 121 -Lt~Pla~~i~~P~~~~~~~~~~-~G~~-~~i-~~y~G~~E~ayl~~F~Pd~~vl~~lg~~~~-~yIvv---R~~~~~A~ 192 (335)
T PF04007_consen 121 -LTLPLADVIITPEAIPKEFLKR-FGAK-NQI-RTYNGYKELAYLHPFKPDPEVLKELGLDDE-PYIVV---RPEAWKAS 192 (335)
T ss_pred -eehhcCCeeECCcccCHHHHHh-cCCc-CCE-EEECCeeeEEeecCCCCChhHHHHcCCCCC-CEEEE---EeccccCe
Confidence 2245678888776555555555 6743 222 237888865443333334578889997754 46553 33332
Q ss_pred --cCH-HHHHHHHHHhhhcCCCeEEEEEeCCcch-hHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHH
Q 044542 300 --KGH-PLLYEAFSSITRDHPGVYLLVAGTGPWG-RRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTL 375 (465)
Q Consensus 300 --Kg~-~~ll~a~~~l~~~~~~~~l~ivG~g~~~-~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~ 375 (465)
+|- ..+-+.+..+.+.+ +. ++++.....+ +.+++.. +.+...- -+..+++..||++|- +-|+..
T Consensus 193 y~~~~~~i~~~ii~~L~~~~-~~-vV~ipr~~~~~~~~~~~~--~~i~~~~--vd~~~Ll~~a~l~Ig------~ggTMa 260 (335)
T PF04007_consen 193 YDNGKKSILPEIIEELEKYG-RN-VVIIPRYEDQRELFEKYG--VIIPPEP--VDGLDLLYYADLVIG------GGGTMA 260 (335)
T ss_pred eecCccchHHHHHHHHHhhC-ce-EEEecCCcchhhHHhccC--ccccCCC--CCHHHHHHhcCEEEe------CCcHHH
Confidence 222 23446667776653 33 5556544333 3333322 4433321 356689999999994 235789
Q ss_pred HHHHHcCCeEEecCCCCc--ceeeeeeCCceEEeCC-CHHHHHHHHHHHHhC
Q 044542 376 IEAMHCGRTVLTPNYPSI--VRTVVVNEELGYTFSP-NVKSFVEALELVIRD 424 (465)
Q Consensus 376 ~EAma~G~PvI~s~~gg~--~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~ 424 (465)
.||...|+|.|.+-.|.. .++.+. +.|+++.. |++++.+.+.+....
T Consensus 261 ~EAA~LGtPaIs~~~g~~~~vd~~L~--~~Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 261 REAALLGTPAISCFPGKLLAVDKYLI--EKGLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred HHHHHhCCCEEEecCCcchhHHHHHH--HCCCeEecCCHHHHHHHHHHhhhc
Confidence 999999999998754322 112222 34788887 999998866665543
No 121
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.00 E-value=1.8e-07 Score=88.68 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=79.9
Q ss_pred CcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecc
Q 044542 286 VSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPT 365 (465)
Q Consensus 286 ~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps 365 (465)
++.++++.|. .+...+++++.++ +++.+++ |..... ...+.+++.+.++.+ +++.++|..||++|..+
T Consensus 188 ~~~iLv~~g~----~~~~~l~~~l~~~----~~~~~i~-~~~~~~--~~~~~~~v~~~~~~~-~~~~~~l~~ad~vI~~~ 255 (321)
T TIGR00661 188 EDYILVYIGF----EYRYKILELLGKI----ANVKFVC-YSYEVA--KNSYNENVEIRRITT-DNFKELIKNAELVITHG 255 (321)
T ss_pred CCcEEEECCc----CCHHHHHHHHHhC----CCeEEEE-eCCCCC--ccccCCCEEEEECCh-HHHHHHHHhCCEEEECC
Confidence 3456656554 3445667776655 4555443 432211 123458999999876 78999999999999843
Q ss_pred cCCCCCcHHHHHHHHcCCeEEecCCCCccee-----eeeeCCceEEeCC-CHHHHHHHHHHHHhC
Q 044542 366 LRPQGLDLTLIEAMHCGRTVLTPNYPSIVRT-----VVVNEELGYTFSP-NVKSFVEALELVIRD 424 (465)
Q Consensus 366 ~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e-----~v~~~~~G~l~~~-d~~~la~~i~~ll~~ 424 (465)
|+ .++.||+++|+|+|.....+..++ .+.+.+.|..++. +. ++.+++...+.+
T Consensus 256 ----G~-~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~~~~~~~ 314 (321)
T TIGR00661 256 ----GF-SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL-RLLEAILDIRNM 314 (321)
T ss_pred ----Ch-HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-HHHHHHHhcccc
Confidence 22 379999999999999888764422 3555667888876 55 555566555554
No 122
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.94 E-value=5.7e-09 Score=99.06 Aligned_cols=211 Identities=12% Similarity=0.127 Sum_probs=122.2
Q ss_pred cccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCccccccc---CC--CCCCcEEEEEeecccc---
Q 044542 227 SSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKL---GV--PANVSLVMGVAGRLVR--- 298 (465)
Q Consensus 227 ~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~---g~--~~~~~~~l~~~Grl~~--- 298 (465)
+-++..++.++..++.+.+ .|+++++|.++.|..-....... ....+++ ++ ...++++++..-+...
T Consensus 121 ~la~lhf~~t~~~~~~L~~-~G~~~~rI~~vG~~~~D~l~~~~----~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~ 195 (346)
T PF02350_consen 121 KLAHLHFAPTEEARERLLQ-EGEPPERIFVVGNPGIDALLQNK----EEIEEKYKNSGILQDAPKPYILVTLHPVTNEDN 195 (346)
T ss_dssp HH-SEEEESSHHHHHHHHH-TT--GGGEEE---HHHHHHHHHH----HTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTH
T ss_pred hhhhhhccCCHHHHHHHHh-cCCCCCeEEEEChHHHHHHHHhH----HHHhhhhhhHHHHhccCCCEEEEEeCcchhcCC
Confidence 4568889999999999998 69999999999885321111111 1111111 22 2344577766644433
Q ss_pred ccCHHHHHHHHHHhhhcCCCeEEEEEeC--Ccchh----HHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCc
Q 044542 299 DKGHPLLYEAFSSITRDHPGVYLLVAGT--GPWGR----RYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLD 372 (465)
Q Consensus 299 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~--g~~~~----~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~ 372 (465)
......+.+++..+.+. +++.+++... ..... .++++ ++++++..+++.++..+++.|+++|--| |
T Consensus 196 ~~~~~~i~~~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll~~a~~vvgdS------s 267 (346)
T PF02350_consen 196 PERLEQILEALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLLKNADLVVGDS------S 267 (346)
T ss_dssp H--HHHHHHHHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHHHHESEEEESS------H
T ss_pred hHHHHHHHHHHHHHHhc-CCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHHhcceEEEEcC------c
Confidence 24466788888888877 6788888775 22222 23334 6999999999999999999999998643 2
Q ss_pred HHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 044542 373 LTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASA 452 (465)
Q Consensus 373 ~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 452 (465)
...-||..+|+|+|.-+..+.+.+.+..+.+- ++..|.+++.+++.+++.+ ++.+..+.. ...-|.-.+.+++
T Consensus 268 GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nv-lv~~~~~~I~~ai~~~l~~-~~~~~~~~~-----~~npYgdG~as~r 340 (346)
T PF02350_consen 268 GIQEEAPSLGKPVVNIRDSGERQEGRERGSNV-LVGTDPEAIIQAIEKALSD-KDFYRKLKN-----RPNPYGDGNASER 340 (346)
T ss_dssp HHHHHGGGGT--EEECSSS-S-HHHHHTTSEE-EETSSHHHHHHHHHHHHH--HHHHHHHHC-----S--TT-SS-HHHH
T ss_pred cHHHHHHHhCCeEEEecCCCCCHHHHhhcceE-EeCCCHHHHHHHHHHHHhC-hHHHHhhcc-----CCCCCCCCcHHHH
Confidence 24449999999999986655554555555444 4767999999999999987 554444322 1223544555555
Q ss_pred HHHHH
Q 044542 453 YERFF 457 (465)
Q Consensus 453 ~~~~~ 457 (465)
+.+++
T Consensus 341 I~~~L 345 (346)
T PF02350_consen 341 IVEIL 345 (346)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55554
No 123
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.92 E-value=3.7e-07 Score=91.20 Aligned_cols=135 Identities=17% Similarity=0.118 Sum_probs=89.1
Q ss_pred EEEEEeecccc-----ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHH--HhcCe
Q 044542 288 LVMGVAGRLVR-----DKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFY--NALDV 360 (465)
Q Consensus 288 ~~l~~~Grl~~-----~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~--~~aDv 360 (465)
.+++..|.... .+-...+++|++.+ + .++++...+.... ..+.+||.+.+++|+.+ ++ ..+++
T Consensus 298 ~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l----~-~~viw~~~~~~~~--~~~p~Nv~i~~w~Pq~~---lL~hp~v~~ 367 (507)
T PHA03392 298 VVYVSFGSSIDTNDMDNEFLQMLLRTFKKL----P-YNVLWKYDGEVEA--INLPANVLTQKWFPQRA---VLKHKNVKA 367 (507)
T ss_pred EEEEECCCCCcCCCCCHHHHHHHHHHHHhC----C-CeEEEEECCCcCc--ccCCCceEEecCCCHHH---HhcCCCCCE
Confidence 66667887643 22345566666665 3 4565555433222 24568999999998654 55 55888
Q ss_pred EEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeeeCCceEEeCC---CHHHHHHHHHHHHhCChHHHHHHHH
Q 044542 361 FVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVNEELGYTFSP---NVKSFVEALELVIRDGPKVLQRKGL 434 (465)
Q Consensus 361 ~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~~~~G~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~ 434 (465)
+|.- |-..++.||+.+|+|+|+....+-.. ..+++.+.|..++. +.+++.++|.+++.+ ++.+++..+
T Consensus 368 fItH-----GG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~-~~y~~~a~~ 441 (507)
T PHA03392 368 FVTQ-----GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIEN-PKYRKNLKE 441 (507)
T ss_pred EEec-----CCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 8862 22458999999999999976543110 23445567887764 789999999999998 666555444
Q ss_pred HHHH
Q 044542 435 ACKE 438 (465)
Q Consensus 435 ~~~~ 438 (465)
-++.
T Consensus 442 ls~~ 445 (507)
T PHA03392 442 LRHL 445 (507)
T ss_pred HHHH
Confidence 3333
No 124
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.91 E-value=7.6e-08 Score=93.36 Aligned_cols=163 Identities=17% Similarity=0.111 Sum_probs=109.2
Q ss_pred CCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeE
Q 044542 282 VPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVF 361 (465)
Q Consensus 282 ~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~ 361 (465)
++.+++++.+..|..... ..+++.+...... -+.++++...+ .+.....+.+|+...+++|+.+ ++..||++
T Consensus 233 ~~~d~~~vyvslGt~~~~---~~l~~~~~~a~~~-l~~~vi~~~~~-~~~~~~~~p~n~~v~~~~p~~~---~l~~ad~v 304 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA---VELLAIVLEALAD-LDVRVIVSLGG-ARDTLVNVPDNVIVADYVPQLE---LLPRADAV 304 (406)
T ss_pred hcCCCCeEEEEcCCcccH---HHHHHHHHHHHhc-CCcEEEEeccc-cccccccCCCceEEecCCCHHH---HhhhcCEE
Confidence 455666777777876544 3333333222222 25666666644 3335566678999999997555 89999999
Q ss_pred EecccCCCCCcHHHHHHHHcCCeEEecCCCCcc---eeeeeeCCceEEeC--C-CHHHHHHHHHHHHhCChHHHHHHHHH
Q 044542 362 VNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIV---RTVVVNEELGYTFS--P-NVKSFVEALELVIRDGPKVLQRKGLA 435 (465)
Q Consensus 362 v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~---~e~v~~~~~G~l~~--~-d~~~la~~i~~ll~~~~~~~~~~~~~ 435 (465)
|+.. | -.++.||+.+|+|+|+-..+.-. .+.+++-+.|.... . +.+.++++|.+++.+ +..++. .++
T Consensus 305 I~hG----G-~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~-~~~~~~-~~~ 377 (406)
T COG1819 305 IHHG----G-AGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLAD-DSYRRA-AER 377 (406)
T ss_pred EecC----C-cchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcC-HHHHHH-HHH
Confidence 9854 2 23899999999999987665211 03456667888887 4 999999999999998 554444 344
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHH
Q 044542 436 CKEHALSMFTATKMASAYERFFLR 459 (465)
Q Consensus 436 ~~~~~~~~fs~~~~~~~~~~~~~~ 459 (465)
.++.+.+.-..++.++.++++..+
T Consensus 378 ~~~~~~~~~g~~~~a~~le~~~~~ 401 (406)
T COG1819 378 LAEEFKEEDGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHhhhcccHHHHHHHHHHHHhc
Confidence 555555555666677777766654
No 125
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.90 E-value=1.5e-07 Score=89.11 Aligned_cols=188 Identities=13% Similarity=0.163 Sum_probs=124.1
Q ss_pred cccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeecccc--ccCHHH
Q 044542 227 SSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVR--DKGHPL 304 (465)
Q Consensus 227 ~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~--~Kg~~~ 304 (465)
+.+|+++++=+...+++.+ .|+ +++.+.|+.-.. ..+.. .....++++ ++++++++.+..|+-.. .+.+..
T Consensus 132 ~~~D~ll~ifPFE~~~y~~-~g~---~~~~VGHPl~d~-~~~~~-~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~ 204 (373)
T PF02684_consen 132 KYVDHLLVIFPFEPEFYKK-HGV---PVTYVGHPLLDE-VKPEP-DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPI 204 (373)
T ss_pred HHHhheeECCcccHHHHhc-cCC---CeEEECCcchhh-hccCC-CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 5668999999999999988 463 578888875322 11211 123455666 77788778778886432 456688
Q ss_pred HHHHHHHhhhcCCCeEEEEEeCCcchhH-HHHh----cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHH
Q 044542 305 LYEAFSSITRDHPGVYLLVAGTGPWGRR-YAEL----GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAM 379 (465)
Q Consensus 305 ll~a~~~l~~~~~~~~l~ivG~g~~~~~-~~~l----~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAm 379 (465)
++++++++.+++|++++++.......+. +++. ..++...- ...+-.+.+++||+.+..| |++.+|++
T Consensus 205 ~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~m~~ad~al~~S------GTaTLE~A 276 (373)
T PF02684_consen 205 FLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVI--IEGESYDAMAAADAALAAS------GTATLEAA 276 (373)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEE--cCCchHHHHHhCcchhhcC------CHHHHHHH
Confidence 9999999999999999998875433322 3222 22232221 1257788999999999755 56999999
Q ss_pred HcCCeEEe-cCCC----------------CcceeeeeeC-CceEEeC-C-CHHHHHHHHHHHHhCChHHHHH
Q 044542 380 HCGRTVLT-PNYP----------------SIVRTVVVNE-ELGYTFS-P-NVKSFVEALELVIRDGPKVLQR 431 (465)
Q Consensus 380 a~G~PvI~-s~~g----------------g~~~e~v~~~-~~G~l~~-~-d~~~la~~i~~ll~~~~~~~~~ 431 (465)
.+|+|.|+ .+.+ +++ .++.+. ...-++. . +++.+++++..++.| ++.++.
T Consensus 277 l~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~-Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~-~~~~~~ 346 (373)
T PF02684_consen 277 LLGVPMVVAYKVSPLTYFIAKRLVKVKYISLP-NIIAGREVVPELIQEDATPENIAAELLELLEN-PEKRKK 346 (373)
T ss_pred HhCCCEEEEEcCcHHHHHHHHHhhcCCEeech-hhhcCCCcchhhhcccCCHHHHHHHHHHHhcC-HHHHHH
Confidence 99999885 3332 222 222211 1111222 3 899999999999999 555333
No 126
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.69 E-value=4.5e-07 Score=88.64 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=102.0
Q ss_pred CCcEEEEEeeccccccCHHHHHH-HHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEe
Q 044542 285 NVSLVMGVAGRLVRDKGHPLLYE-AFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVN 363 (465)
Q Consensus 285 ~~~~~l~~~Grl~~~Kg~~~ll~-a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ 363 (465)
+++.+++..|+....+. + +++ ++..+.+. +.-.++.+|.+...+.++++.++|.+.+++++. +++..||++|.
T Consensus 224 ~~~~v~vs~Gs~~~~~~-~-~~~~~~~al~~~-~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~---~ll~~~~~~I~ 297 (392)
T TIGR01426 224 GRPVVLISLGTVFNNQP-S-FYRTCVEAFRDL-DWHVVLSVGRGVDPADLGELPPNVEVRQWVPQL---EILKKADAFIT 297 (392)
T ss_pred CCCEEEEecCccCCCCH-H-HHHHHHHHHhcC-CCeEEEEECCCCChhHhccCCCCeEEeCCCCHH---HHHhhCCEEEE
Confidence 44577778888643322 2 333 22323222 323355567665545555566899999999754 67899999997
Q ss_pred cccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeeeCCceEEeCC---CHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 044542 364 PTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVNEELGYTFSP---NVKSFVEALELVIRDGPKVLQRKGLACK 437 (465)
Q Consensus 364 ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~~~~G~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~~~ 437 (465)
.+ |. .++.||+++|+|+|+....+-.. ..+.+.+.|..+.. ++++++++|.+++.+ ++.++++.+ .+
T Consensus 298 hg----G~-~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~-~~~~~~~~~-l~ 370 (392)
T TIGR01426 298 HG----GM-NSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSD-PRYAERLRK-MR 370 (392)
T ss_pred CC----Cc-hHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcC-HHHHHHHHH-HH
Confidence 43 32 38899999999999976543221 22444566777753 689999999999998 765555533 34
Q ss_pred HHHHhhCCHHHHHHHHHHHH
Q 044542 438 EHALSMFTATKMASAYERFF 457 (465)
Q Consensus 438 ~~~~~~fs~~~~~~~~~~~~ 457 (465)
+.+...-..+..++.+++++
T Consensus 371 ~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 371 AEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHcCCHHHHHHHHHHhh
Confidence 44444457777777666654
No 127
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.64 E-value=1.3e-06 Score=84.71 Aligned_cols=193 Identities=15% Similarity=0.253 Sum_probs=105.9
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCH-
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGH- 302 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~- 302 (465)
......|.+++.|+..++.+.+.++.+.+++.+...+-....+.........+++.++++.+++ +|+|+-.+......
T Consensus 130 ~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k-~ILyaPT~R~~~~~~ 208 (369)
T PF04464_consen 130 RNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKK-VILYAPTWRDNSSNE 208 (369)
T ss_dssp HHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS-E-EEEEE----GGG--G
T ss_pred hhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCCc-EEEEeeccccccccc
Confidence 4567889999999999999999999888777765544322223333333346777888887774 66687655443222
Q ss_pred -----H--HHHHHHHHhhhcCCCeEEEEEeCCcchhHHHH---hcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCc
Q 044542 303 -----P--LLYEAFSSITRDHPGVYLLVAGTGPWGRRYAE---LGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLD 372 (465)
Q Consensus 303 -----~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~---l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~ 372 (465)
. .-.+.+..+. .+++.+++-........... ..++|.+...- +++.+++..||++|.= ++
T Consensus 209 ~~~~~~~~~~~~~l~~~~--~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~--~~~~~ll~~aDiLITD------yS 278 (369)
T PF04464_consen 209 YFKFFFSDLDFEKLNFLL--KNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDN--EDIYDLLAAADILITD------YS 278 (369)
T ss_dssp GSS----TT-HHHHHHHH--TTTEEEEE--SHHHHTT----TT-TTTEEE-TT---S-HHHHHHT-SEEEES------S-
T ss_pred cccccccccCHHHHHHHh--CCCcEEEEEeCchhhhchhhhhccCCcEEECCCC--CCHHHHHHhcCEEEEe------ch
Confidence 1 1223333222 25788888775433333322 23777776653 5899999999999952 34
Q ss_pred HHHHHHHHcCCeEEec--CCCCcce--ee---eeeCCceEEeCCCHHHHHHHHHHHHhCChHHH
Q 044542 373 LTLIEAMHCGRTVLTP--NYPSIVR--TV---VVNEELGYTFSPNVKSFVEALELVIRDGPKVL 429 (465)
Q Consensus 373 ~~~~EAma~G~PvI~s--~~gg~~~--e~---v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~ 429 (465)
.++.|++.+++|||-. |...... .. ..+...|-++. +.++|.++|..++.+ +...
T Consensus 279 Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~-~~~eL~~~i~~~~~~-~~~~ 340 (369)
T PF04464_consen 279 SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY-NFEELIEAIENIIEN-PDEY 340 (369)
T ss_dssp THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES-SHHHHHHHHTTHHHH-HHHT
T ss_pred hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC-CHHHHHHHHHhhhhC-CHHH
Confidence 4999999999999954 3311100 11 12334566666 899999999999887 4443
No 128
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.64 E-value=5.9e-06 Score=81.94 Aligned_cols=303 Identities=10% Similarity=0.065 Sum_probs=170.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC--cccCCcceEEEe------ecCCCcc---
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN--DVHQGNLHVHFA------ANDHGSV--- 148 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~~~~~~~~v~~~------~~~~~~~--- 148 (465)
.||.+++.+ .+| ..+...|+++|+++.-++.+....+...... +.-......... ...+..+
T Consensus 227 ~kIfI~AGE------~SG-DlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~l~~~~ 299 (608)
T PRK01021 227 TSCFISAGE------HSG-DTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFKLWYRY 299 (608)
T ss_pred CeEEEEecc------ccH-HHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHHHHHHH
Confidence 489988865 244 5677899999999866777776555332211 100000000000 0000000
Q ss_pred ----ccCCCCCCcEEEecCC-chhHHhh-----hcC--CcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhh
Q 044542 149 ----NLNNDGAFDYVHTESV-SLPHWRA-----KMV--PNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAM 216 (465)
Q Consensus 149 ----~~~~~~~~DiI~~~~~-~~~~~~~-----~~~--p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (465)
....+.+||++++-++ ++...++ .++ | ++..+-- .- ..|-.++.
T Consensus 300 ~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ip-viyYVsP--------------------qV---WAWR~~Ri 355 (608)
T PRK01021 300 RKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGK-IVHYVCP--------------------SI---WAWRPKRK 355 (608)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCC-EEEEECc--------------------cc---eeeCcchH
Confidence 1116789999988543 3222222 222 4 4433321 00 01112222
Q ss_pred HHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeecc
Q 044542 217 PRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRL 296 (465)
Q Consensus 217 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl 296 (465)
. ..-+..|+++++=+...+.+++ .|+ +++.+.|+.-.. ... ...+.+.++++|++++++++.+..|+-
T Consensus 356 k------ki~k~vD~ll~IfPFE~~~y~~-~gv---~v~yVGHPL~d~-i~~-~~~~~~~r~~lgl~~~~~iIaLLPGSR 423 (608)
T PRK01021 356 T------ILEKYLDLLLLILPFEQNLFKD-SPL---RTVYLGHPLVET-ISS-FSPNLSWKEQLHLPSDKPIVAAFPGSR 423 (608)
T ss_pred H------HHHHHhhhheecCccCHHHHHh-cCC---CeEEECCcHHhh-ccc-CCCHHHHHHHcCCCCCCCEEEEECCCC
Confidence 2 3335679999999999999988 564 567788875222 211 222345688899987777777788864
Q ss_pred cc--ccCHHHHHHHHH--HhhhcCCCeEEEEEeCCcc-hhHHHHhc---C--CeEEcCCCChhHHHHHHHhcCeEEeccc
Q 044542 297 VR--DKGHPLLYEAFS--SITRDHPGVYLLVAGTGPW-GRRYAELG---Q--NVKVLGALEAHQLSEFYNALDVFVNPTL 366 (465)
Q Consensus 297 ~~--~Kg~~~ll~a~~--~l~~~~~~~~l~ivG~g~~-~~~~~~l~---~--~V~~~g~v~~~~~~~~~~~aDv~v~ps~ 366 (465)
.. .+....+++|++ .+.+ +.++++....+. .+.+++.- + .+.+.. .++-.+++++||+.+..|
T Consensus 424 ~~EI~rllPv~l~aa~~~~l~~---~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~---~~~~~~~m~aaD~aLaaS- 496 (608)
T PRK01021 424 RGDILRNLTIQVQAFLASSLAS---THQLLVSSANPKYDHLILEVLQQEGCLHSHIVP---SQFRYELMRECDCALAKC- 496 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CeEEEEecCchhhHHHHHHHHhhcCCCCeEEec---CcchHHHHHhcCeeeecC-
Confidence 32 466778888887 5543 577776543322 33444422 1 223321 123479999999999855
Q ss_pred CCCCCcHHHHHHHHcCCeEEe-cCCCCcce-----------------eeeeeCC-ceEEe---CC-CHHHHHHHHHHHHh
Q 044542 367 RPQGLDLTLIEAMHCGRTVLT-PNYPSIVR-----------------TVVVNEE-LGYTF---SP-NVKSFVEALELVIR 423 (465)
Q Consensus 367 ~~eg~~~~~~EAma~G~PvI~-s~~gg~~~-----------------e~v~~~~-~G~l~---~~-d~~~la~~i~~ll~ 423 (465)
|++.+|++.+|+|.|+ .+.+...- .++.+.+ .--++ +. +++.+++++ +++.
T Consensus 497 -----GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~ 570 (608)
T PRK01021 497 -----GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILK 570 (608)
T ss_pred -----CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhc
Confidence 5699999999999986 33332110 1121111 12233 23 899999996 8888
Q ss_pred CChHHHHHHHHHHHHH
Q 044542 424 DGPKVLQRKGLACKEH 439 (465)
Q Consensus 424 ~~~~~~~~~~~~~~~~ 439 (465)
| ++.++++.+...+.
T Consensus 571 d-~~~r~~~~~~l~~l 585 (608)
T PRK01021 571 T-SQSKEKQKDACRDL 585 (608)
T ss_pred C-HHHHHHHHHHHHHH
Confidence 8 66666666554443
No 129
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.59 E-value=1.1e-05 Score=72.72 Aligned_cols=211 Identities=11% Similarity=0.100 Sum_probs=124.8
Q ss_pred HhhcccCEEEEeChhHHHH-HHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeecc-ccccC
Q 044542 224 RFFSSYNQHICISNSAAEV-LVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRL-VRDKG 301 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~-~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl-~~~Kg 301 (465)
...++..++++ ......+ -++.++++.+ ....|.-.++........ + .+.+++.| .+|+- ++..+
T Consensus 94 ~aq~rvg~v~a-trGD~~~~a~~~~~v~~~-llyfpt~m~~~l~~~~~~-~---------~~~~~~tI-lvGNSgd~SN~ 160 (322)
T PRK02797 94 LAQKRVGHVFA-TRGDLSYFAQRHPKVPGS-LLYFPTRMDPSLNTMAND-R---------QRAGKMTI-LVGNSGDRSNR 160 (322)
T ss_pred HHHhhcCeEEE-ecchHHHHHHhcCCCCcc-EEecCCcchhhhcccccc-c---------cCCCceEE-EEeCCCCCccc
Confidence 44578889999 5444455 5666676543 333332222211111100 0 11234666 35554 55677
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEE-eC--Cc--chhHHHHh-----c-CCeEE-cCCCChhHHHHHHHhcCeEEecccCCC
Q 044542 302 HPLLYEAFSSITRDHPGVYLLVA-GT--GP--WGRRYAEL-----G-QNVKV-LGALEAHQLSEFYNALDVFVNPTLRPQ 369 (465)
Q Consensus 302 ~~~ll~a~~~l~~~~~~~~l~iv-G~--g~--~~~~~~~l-----~-~~V~~-~g~v~~~~~~~~~~~aDv~v~ps~~~e 369 (465)
+..+++++++... .++++++- |- |. +.+.+++. + +++.. ..+++.+|..++++.||+.++.-.+-+
T Consensus 161 Hie~L~~l~~~~~--~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQ 238 (322)
T PRK02797 161 HIEALRALHQQFG--DNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQ 238 (322)
T ss_pred HHHHHHHHHHHhC--CCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhh
Confidence 7777777766643 57776664 43 22 22233222 2 56655 567899999999999999999766568
Q ss_pred CCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC---CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCH
Q 044542 370 GLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP---NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTA 446 (465)
Q Consensus 370 g~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~ 446 (465)
|.|+.++ .+.+|+||+.++....-.++ .+.+.-++++. |...+.+ ..+++....++.+. |+.
T Consensus 239 giGnl~l-Li~~G~~v~l~r~n~fwqdl-~e~gv~Vlf~~d~L~~~~v~e-----------~~rql~~~dk~~I~--Ff~ 303 (322)
T PRK02797 239 GIGTLCL-LIQLGKPVVLSRDNPFWQDL-TEQGLPVLFTGDDLDEDIVRE-----------AQRQLASVDKNIIA--FFS 303 (322)
T ss_pred HHhHHHH-HHHCCCcEEEecCCchHHHH-HhCCCeEEecCCcccHHHHHH-----------HHHHHHhhCcceee--ecC
Confidence 8887666 89999999987544443244 33334454543 2222222 22334444444443 999
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 044542 447 TKMASAYERFFLRMKNPY 464 (465)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~ 464 (465)
++..+.|.+++.....+.
T Consensus 304 pn~~~~W~~~l~~~~g~~ 321 (322)
T PRK02797 304 PNYLQGWRNALAIAAGEV 321 (322)
T ss_pred HhHHHHHHHHHHHhhCCC
Confidence 999999999998876653
No 130
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.59 E-value=9.2e-05 Score=72.13 Aligned_cols=196 Identities=14% Similarity=0.116 Sum_probs=107.5
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCc-cc---CcccccccCCCCCCcEEEEEeeccccc
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDP-EA---GVRFPEKLGVPANVSLVMGVAGRLVRD 299 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~-~~---~~~~r~~~g~~~~~~~~l~~~Grl~~~ 299 (465)
..++++|.|.+-.+...+.+.+ +|++..++.+.+..+ ..-+.. .. ...+...++....++.+-+.+..+.+.
T Consensus 172 ~vl~~~~~ItvRD~~S~~~Lk~-lGv~~~~v~~~aDpA---F~L~~~~~~~~~~~~~~~~~~~~~~~~~Vgisvr~~~~~ 247 (426)
T PRK10017 172 YVFGHCDALILRESVSLDLMKR-SNITTAKVEHGVDTA---WLVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPF 247 (426)
T ss_pred HHHhcCCEEEEccHHHHHHHHH-hCCCccceEEecChh---hhCCccccccccchhhhhhhcccccCCEEEEEecccccc
Confidence 5578999988888888888877 799877888876433 211111 00 001111122222333333333333211
Q ss_pred -c--C------HHHHHHHHHHhhhcCCCeEEEEEeC-----Cc-chhHHHH----hc--CCeE-EcCCCChhHHHHHHHh
Q 044542 300 -K--G------HPLLYEAFSSITRDHPGVYLLVAGT-----GP-WGRRYAE----LG--QNVK-VLGALEAHQLSEFYNA 357 (465)
Q Consensus 300 -K--g------~~~ll~a~~~l~~~~~~~~l~ivG~-----g~-~~~~~~~----l~--~~V~-~~g~v~~~~~~~~~~~ 357 (465)
+ | ...+.+++..+.+++-++.|+-.-. ++ +....++ +. ++++ +.+..+..++..+++.
T Consensus 248 ~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~ 327 (426)
T PRK10017 248 DKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGA 327 (426)
T ss_pred cccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhh
Confidence 1 1 1344566666666543444333211 11 1111222 22 2333 3444556789999999
Q ss_pred cCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeee-CCceEEeC--C-CHHHHHHHHHHHHhCChHHHH
Q 044542 358 LDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVN-EELGYTFS--P-NVKSFVEALELVIRDGPKVLQ 430 (465)
Q Consensus 358 aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~-~~~G~l~~--~-d~~~la~~i~~ll~~~~~~~~ 430 (465)
+|++|-.-.+ .++=|++.|+|+|+-....=...+..+ +...++++ . +.++|.+.+.+++++ .+..+
T Consensus 328 ~dl~ig~RlH------a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~-r~~~~ 397 (426)
T PRK10017 328 CELTVGTRLH------SAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQ-LPALN 397 (426)
T ss_pred CCEEEEecch------HHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhC-HHHHH
Confidence 9999986655 778899999999986543111111111 11223333 3 788999999999999 54433
No 131
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.55 E-value=2e-05 Score=71.71 Aligned_cols=303 Identities=13% Similarity=0.117 Sum_probs=163.3
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC--CcEEEEEeCCCCCCCCCcccCCcceEEEeecCC---CccccC--
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAAR--GHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH---GSVNLN-- 151 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~-- 151 (465)
.|||++.++.. ..=|.-++...++++|.+. |.+|.+++......... .......|....... +.....
T Consensus 9 ~~Ri~~Yshd~----~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~-~~~gVd~V~LPsl~k~~~G~~~~~d~ 83 (400)
T COG4671 9 RPRILFYSHDL----LGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP-GPAGVDFVKLPSLIKGDNGEYGLVDL 83 (400)
T ss_pred cceEEEEehhh----ccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC-CcccCceEecCceEecCCCceeeeec
Confidence 45999999864 2236667889999999998 99999999876543322 112222222222111 111111
Q ss_pred -------------------CCCCCcEEEecCCch---------hHHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCC
Q 044542 152 -------------------NDGAFDYVHTESVSL---------PHWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNG 203 (465)
Q Consensus 152 -------------------~~~~~DiI~~~~~~~---------~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~ 203 (465)
+..+|||+++....+ ...+...-++.+....+..- ..+...
T Consensus 84 ~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~D------~p~~~~----- 152 (400)
T COG4671 84 DGDLEETKKLRSQLILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIRD------IPQELE----- 152 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhhh------chhhhc-----
Confidence 788999999986422 22222222334444444311 111000
Q ss_pred CCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCC-CCEEEecCCCCCCCccCCcccCcccccccCC
Q 044542 204 VLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQ-RNVHVILNGVDETKFVHDPEAGVRFPEKLGV 282 (465)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~-~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~ 282 (465)
.. |-..-..+ .+-+.+|.|.+..+..-..+.+.|++++ -+-.+.+-|.=.......+.. .. .
T Consensus 153 --~~---w~~~~~~~-----~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p-----~~--~ 215 (400)
T COG4671 153 --AD---WRRAETVR-----LINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLP-----PH--E 215 (400)
T ss_pred --cc---hhhhHHHH-----HHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCC-----Cc--C
Confidence 00 11111111 2235668888887766655555566542 223344444321000000000 00 0
Q ss_pred CCCCcEEEEEeeccccccCHHH---HHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh---c---CCeEEcCCCChhHHHH
Q 044542 283 PANVSLVMGVAGRLVRDKGHPL---LYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL---G---QNVKVLGALEAHQLSE 353 (465)
Q Consensus 283 ~~~~~~~l~~~Grl~~~Kg~~~---ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l---~---~~V~~~g~v~~~~~~~ 353 (465)
.+++..+++.+|. ..-|-++ .++|...+..-.+ .-+++.|..-.++..+++ + ++|.+..+. +++..
T Consensus 216 ~pE~~~Ilvs~GG--G~dG~eLi~~~l~A~~~l~~l~~-~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~--~~~~~ 290 (400)
T COG4671 216 APEGFDILVSVGG--GADGAELIETALAAAQLLAGLNH-KWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFR--NDFES 290 (400)
T ss_pred CCccceEEEecCC--ChhhHHHHHHHHHHhhhCCCCCc-ceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhh--hhHHH
Confidence 0222366667774 3344433 3334333322211 236666753333333333 2 889999997 89999
Q ss_pred HHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCccee-eeee------CCceEEeCC--CHHHHHHHHHHHHhC
Q 044542 354 FYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRT-VVVN------EELGYTFSP--NVKSFVEALELVIRD 424 (465)
Q Consensus 354 ~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e-~v~~------~~~G~l~~~--d~~~la~~i~~ll~~ 424 (465)
+++.|+..|.-+ |+ ++++|-+++|||.+.-....-.+| .+.. |-..++.+. +++.|+++|...+..
T Consensus 291 ll~gA~~vVSm~----GY-NTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 291 LLAGARLVVSMG----GY-NTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred HHHhhheeeecc----cc-hhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccC
Confidence 999999999633 22 589999999999987665544332 1111 223444444 899999999999884
No 132
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.53 E-value=1.6e-06 Score=71.19 Aligned_cols=92 Identities=23% Similarity=0.246 Sum_probs=57.3
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEee-cCCCccc---------c
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAA-NDHGSVN---------L 150 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~---------~ 150 (465)
||++++... +.++.++++.|.+.|+||++++..... ...+...+. .+.... .....+. .
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~-~~~~~~~~i-~~~~~~~~~k~~~~~~~~~~l~k~ 69 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDY-EKYEIIEGI-KVIRLPSPRKSPLNYIKYFRLRKI 69 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCc-hhhhHhCCe-EEEEecCCCCccHHHHHHHHHHHH
Confidence 688888752 457889999999999999999996543 111122222 222222 1111111 1
Q ss_pred CCCCCCcEEEecCCc---hhHHhh---hc-CCcEEEEecch
Q 044542 151 NNDGAFDYVHTESVS---LPHWRA---KM-VPNVAVTWHGI 184 (465)
Q Consensus 151 ~~~~~~DiI~~~~~~---~~~~~~---~~-~p~~v~~~h~~ 184 (465)
.++.+||+||+|... +...++ .+ .| ++++.||.
T Consensus 70 ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~-~i~~~hg~ 109 (139)
T PF13477_consen 70 IKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKK-VIYTVHGS 109 (139)
T ss_pred hccCCCCEEEEecCChHHHHHHHHHHHcCCCC-EEEEecCC
Confidence 178899999999853 222222 23 55 99999985
No 133
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=98.48 E-value=2e-07 Score=84.17 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=35.3
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
||++++.++++-...||.+.++..|.++|+++||+|.|+++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 7999999987656999999999999999999999999999876
No 134
>PLN02448 UDP-glycosyltransferase family protein
Probab=98.48 E-value=0.00039 Score=69.06 Aligned_cols=127 Identities=16% Similarity=0.095 Sum_probs=75.7
Q ss_pred CcEEEEEeecccc--ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHh-cCCeEEcCCCChhHHHHHHHhcCeEE
Q 044542 286 VSLVMGVAGRLVR--DKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAEL-GQNVKVLGALEAHQLSEFYNALDVFV 362 (465)
Q Consensus 286 ~~~~l~~~Grl~~--~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l-~~~V~~~g~v~~~~~~~~~~~aDv~v 362 (465)
++.+.+..|.... ..-+..++++++.. +..++++..++ ...+.+. .+++.+.+++|+.++ +...++..
T Consensus 274 ~~vvyvsfGs~~~~~~~~~~~~~~~l~~~-----~~~~lw~~~~~-~~~~~~~~~~~~~v~~w~pQ~~i---L~h~~v~~ 344 (459)
T PLN02448 274 GSVLYVSLGSFLSVSSAQMDEIAAGLRDS-----GVRFLWVARGE-ASRLKEICGDMGLVVPWCDQLKV---LCHSSVGG 344 (459)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCc-hhhHhHhccCCEEEeccCCHHHH---hccCccce
Confidence 3466667787643 12244444455443 44566655433 1223332 368888999987764 55666633
Q ss_pred ecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeeeC-CceEEeC-------C-CHHHHHHHHHHHHhC
Q 044542 363 NPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVNE-ELGYTFS-------P-NVKSFVEALELVIRD 424 (465)
Q Consensus 363 ~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~~-~~G~l~~-------~-d~~~la~~i~~ll~~ 424 (465)
+-++ |--++++||+.+|+|+|+-...+-.. ..+.+. +.|+-+. . +.+++++++++++.+
T Consensus 345 fvtH---gG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~ 415 (459)
T PLN02448 345 FWTH---CGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDL 415 (459)
T ss_pred EEec---CchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcC
Confidence 3332 22359999999999999976543210 122331 3455542 2 789999999999986
No 135
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.47 E-value=3.3e-05 Score=69.12 Aligned_cols=283 Identities=13% Similarity=0.090 Sum_probs=161.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC-Ccc----------
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH-GSV---------- 148 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~---------- 148 (465)
|||.+-..+-| ...+...+...|.++||+|.+-|......... +...+.......... ...
T Consensus 1 mkVwiDI~n~~-------hvhfFk~lI~elekkG~ev~iT~rd~~~v~~L-Ld~ygf~~~~Igk~g~~tl~~Kl~~~~eR 72 (346)
T COG1817 1 MKVWIDIGNPP-------HVHFFKNLIWELEKKGHEVLITCRDFGVVTEL-LDLYGFPYKSIGKHGGVTLKEKLLESAER 72 (346)
T ss_pred CeEEEEcCCcc-------hhhHHHHHHHHHHhCCeEEEEEEeecCcHHHH-HHHhCCCeEeecccCCccHHHHHHHHHHH
Confidence 57777655422 35678999999999999998888766443222 122222222222111 111
Q ss_pred -----ccCCCCCCcEEEe-cCCchhHH-hhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHH
Q 044542 149 -----NLNNDGAFDYVHT-ESVSLPHW-RAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVD 221 (465)
Q Consensus 149 -----~~~~~~~~DiI~~-~~~~~~~~-~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (465)
....+.+||+.+. |++.++.. ...++| .+.....-... .+
T Consensus 73 ~~~L~ki~~~~kpdv~i~~~s~~l~rvafgLg~p-sIi~~D~ehA~------------------------~q-------- 119 (346)
T COG1817 73 VYKLSKIIAEFKPDVAIGKHSPELPRVAFGLGIP-SIIFVDNEHAE------------------------AQ-------- 119 (346)
T ss_pred HHHHHHHHhhcCCceEeecCCcchhhHHhhcCCc-eEEecCChhHH------------------------HH--------
Confidence 1117889999876 44433332 234556 44443321110 00
Q ss_pred HHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCC----CCccCCcccCcccccccCCCCCCcEEEEEeec--
Q 044542 222 EIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDE----TKFVHDPEAGVRFPEKLGVPANVSLVMGVAGR-- 295 (465)
Q Consensus 222 ~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~----~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Gr-- 295 (465)
.+..+.-|+.++++.....+.+.. +|-.+.++. -+||+-. ..|.|+ .++-+++|+..+.+++++=.=.
T Consensus 120 nkl~~Pla~~ii~P~~~~~~~~~~-~G~~p~~i~-~~~giae~~~v~~f~pd----~evlkeLgl~~~~~yIVmRpe~~~ 193 (346)
T COG1817 120 NKLTLPLADVIITPEAIDEEELLD-FGADPNKIS-GYNGIAELANVYGFVPD----PEVLKELGLEEGETYIVMRPEPWG 193 (346)
T ss_pred hhcchhhhhheecccccchHHHHH-hCCCcccee-cccceeEEeecccCCCC----HHHHHHcCCCCCCceEEEeecccc
Confidence 113346678888887777777666 676555553 3455532 224343 4677889998876666542211
Q ss_pred ---cccccCHHHHHHHHHHhhhcCCCeEEEEEeCC-cchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCC
Q 044542 296 ---LVRDKGHPLLYEAFSSITRDHPGVYLLVAGTG-PWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGL 371 (465)
Q Consensus 296 ---l~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g-~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~ 371 (465)
...+++++.+.+++..+.+.+ .+++-.. ..++.+++. ++++..... -+-.+++-.|++++- +-
T Consensus 194 A~y~~g~~~~~~~~~li~~l~k~g----iV~ipr~~~~~eife~~-~n~i~pk~~--vD~l~Llyya~lvig------~g 260 (346)
T COG1817 194 AHYDNGDRGISVLPDLIKELKKYG----IVLIPREKEQAEIFEGY-RNIIIPKKA--VDTLSLLYYATLVIG------AG 260 (346)
T ss_pred ceeeccccchhhHHHHHHHHHhCc----EEEecCchhHHHHHhhh-ccccCCccc--ccHHHHHhhhheeec------CC
Confidence 123566667788888886542 4444443 233333333 233222222 244457888888874 23
Q ss_pred cHHHHHHHHcCCeEEecCCCCcc--eeeeeeCCceEEeCC-CHHHHHHHHHHHHhC
Q 044542 372 DLTLIEAMHCGRTVLTPNYPSIV--RTVVVNEELGYTFSP-NVKSFVEALELVIRD 424 (465)
Q Consensus 372 ~~~~~EAma~G~PvI~s~~gg~~--~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~ 424 (465)
|...-||...|+|.|++.-|-.- ++.+ -+.|.++.. |+.+..+...+.+.+
T Consensus 261 gTMarEaAlLGtpaIs~~pGkll~vdk~l--ie~G~~~~s~~~~~~~~~a~~~l~~ 314 (346)
T COG1817 261 GTMAREAALLGTPAISCYPGKLLAVDKYL--IEKGLLYHSTDEIAIVEYAVRNLKY 314 (346)
T ss_pred chHHHHHHHhCCceEEecCCccccccHHH--HhcCceeecCCHHHHHHHHHHHhhc
Confidence 56789999999999998744111 1111 256888887 888877777777776
No 136
>PLN02208 glycosyltransferase family protein
Probab=98.41 E-value=0.0011 Score=65.28 Aligned_cols=224 Identities=11% Similarity=-0.003 Sum_probs=113.5
Q ss_pred hhcccCEEEEeChhHHH-HHHHHhCCC-CCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCH
Q 044542 225 FFSSYNQHICISNSAAE-VLVKIYQLP-QRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGH 302 (465)
Q Consensus 225 ~~~~~d~ii~~S~~~~~-~~~~~~~~~-~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~ 302 (465)
.+.++|.+++.|-+..+ .+.+.+.-+ ..++..|..-..... .. .....++.+-+.-.+++..+.+.+|.... -..
T Consensus 190 ~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~-~~-~~~~~~~~~wLd~~~~~sVvyvSfGS~~~-l~~ 266 (442)
T PLN02208 190 GLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPD-TS-KPLEEQWSHFLSGFPPKSVVFCSLGSQII-LEK 266 (442)
T ss_pred hhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcC-CC-CCCHHHHHHHHhcCCCCcEEEEecccccc-CCH
Confidence 45688999988854433 333333211 134555543321110 00 00011222222222333477778888753 244
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEeC-C--cc----hh-HHHHh-cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcH
Q 044542 303 PLLYEAFSSITRDHPGVYLLVAGT-G--PW----GR-RYAEL-GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDL 373 (465)
Q Consensus 303 ~~ll~a~~~l~~~~~~~~l~ivG~-g--~~----~~-~~~~l-~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~ 373 (465)
+.+.+.+..+....-.+.+++--. + .. .+ ..++. +.++.+.+|+|+.+ +|+...+..+-|+. | -+
T Consensus 267 ~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~---iL~H~~v~~FvtHc--G-~n 340 (442)
T PLN02208 267 DQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPL---ILDHPSIGCFVNHC--G-PG 340 (442)
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHH---HhcCCccCeEEccC--C-ch
Confidence 456666555422222343333311 1 11 11 11111 26888889998776 56667665554532 2 36
Q ss_pred HHHHHHHcCCeEEecCCCCcce---eeeee-CCceEEeC------CCHHHHHHHHHHHHhCChHHHHHHHHHHHHH---H
Q 044542 374 TLIEAMHCGRTVLTPNYPSIVR---TVVVN-EELGYTFS------PNVKSFVEALELVIRDGPKVLQRKGLACKEH---A 440 (465)
Q Consensus 374 ~~~EAma~G~PvI~s~~gg~~~---e~v~~-~~~G~l~~------~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~---~ 440 (465)
+++||+++|+|+|+-..-+-.. .++.+ -+.|+.+. .+.+++.++|.+++.++.+..+++.+++++. +
T Consensus 341 S~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~ 420 (442)
T PLN02208 341 TIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEIL 420 (442)
T ss_pred HHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999976532110 12222 34566663 2789999999999987323444444444333 3
Q ss_pred HhhCCHHHHHHHHHHHH
Q 044542 441 LSMFTATKMASAYERFF 457 (465)
Q Consensus 441 ~~~fs~~~~~~~~~~~~ 457 (465)
.+.=|..+..+++.+-+
T Consensus 421 ~~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 421 VSPGLLTGYVDKFVEEL 437 (442)
T ss_pred hcCCcHHHHHHHHHHHH
Confidence 23234444444444433
No 137
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=1.8e-05 Score=69.83 Aligned_cols=286 Identities=15% Similarity=0.141 Sum_probs=142.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCccccCCCCCCcEE
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSVNLNNDGAFDYV 159 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~DiI 159 (465)
|||+|++...+ ...+|.-.+...|+++|.++|..+..++......-............... -...++.++|++
T Consensus 1 M~V~i~~Dgg~--~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~~f~~~~~~~-----~n~ik~~k~d~l 73 (318)
T COG3980 1 MKVLIRCDGGL--EIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYEGFKVLEGRG-----NNLIKEEKFDLL 73 (318)
T ss_pred CcEEEEecCCc--ccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhhhccceeeec-----ccccccccCCEE
Confidence 89999998764 24467777899999999999988888887663221111100100000000 002358899999
Q ss_pred EecCCchhHHhhhcC----CcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEe
Q 044542 160 HTESVSLPHWRAKMV----PNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICI 235 (465)
Q Consensus 160 ~~~~~~~~~~~~~~~----p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 235 (465)
++.++++..-..+.+ ...++.+.+.... . ++..| ..+
T Consensus 74 I~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~-----------------------~--------------~~d~d--~iv 114 (318)
T COG3980 74 IFDSYGLNADDFKLIKEEAGSKILIFDDENAK-----------------------S--------------FKDND--LIV 114 (318)
T ss_pred EEeccCCCHHHHHHHHHHhCCcEEEecCCCcc-----------------------c--------------hhhhH--hhh
Confidence 999876544322211 1123333332110 0 00111 111
Q ss_pred ChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhc
Q 044542 236 SNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRD 315 (465)
Q Consensus 236 S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~ 315 (465)
.. ..... .+|+.-+.+..+ ..|++-....+. -...|+..-..+.. -+++..|.- ..|+ ...+.++.+.+.
T Consensus 115 N~-~~~a~-~~y~~v~~k~~~-~lGp~y~~lr~e---F~~~r~~~~~r~~r-~ilI~lGGs-Dpk~--lt~kvl~~L~~~ 184 (318)
T COG3980 115 NA-ILNAN-DYYGLVPNKTRY-YLGPGYAPLRPE---FYALREENTERPKR-DILITLGGS-DPKN--LTLKVLAELEQK 184 (318)
T ss_pred hh-hhcch-hhccccCcceEE-EecCCceeccHH---HHHhHHHHhhcchh-eEEEEccCC-Chhh--hHHHHHHHhhcc
Confidence 11 11111 224444445433 334332111111 01111111111122 244466653 3455 356777777665
Q ss_pred CCCeEEEEE-eCC-cchhHHHH-hc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEe---
Q 044542 316 HPGVYLLVA-GTG-PWGRRYAE-LG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLT--- 387 (465)
Q Consensus 316 ~~~~~l~iv-G~g-~~~~~~~~-l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~--- 387 (465)
++.+.|+ |++ +..+.+++ .. +++.+.-.. ++++.+++.||+.|.. -|.++.||...|+|.++
T Consensus 185 --~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~--~dma~LMke~d~aI~A------aGstlyEa~~lgvP~l~l~~ 254 (318)
T COG3980 185 --NVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDT--NDMAELMKEADLAISA------AGSTLYEALLLGVPSLVLPL 254 (318)
T ss_pred --CeeEEEEecCCCcchhHHHHHHhhCCCeeeEecc--hhHHHHHHhcchheec------cchHHHHHHHhcCCceEEee
Confidence 3455544 432 22222222 22 777777665 7999999999999963 25699999999999332
Q ss_pred -cCCCCcceeee---eeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHH
Q 044542 388 -PNYPSIVRTVV---VNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGL 434 (465)
Q Consensus 388 -s~~gg~~~e~v---~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~ 434 (465)
.+--....+.- .....|+-. ........+.++..| +..+..+..
T Consensus 255 a~NQ~~~a~~f~~lg~~~~l~~~l--~~~~~~~~~~~i~~d-~~~rk~l~~ 302 (318)
T COG3980 255 AENQIATAKEFEALGIIKQLGYHL--KDLAKDYEILQIQKD-YARRKNLSF 302 (318)
T ss_pred eccHHHHHHHHHhcCchhhccCCC--chHHHHHHHHHhhhC-HHHhhhhhh
Confidence 22111110000 001122222 345666677778787 555555443
No 138
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.35 E-value=0.00016 Score=66.28 Aligned_cols=261 Identities=12% Similarity=0.089 Sum_probs=146.8
Q ss_pred CCCCCcEEEecCCc-hhHHhh---hcC--CcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHh
Q 044542 152 NDGAFDYVHTESVS-LPHWRA---KMV--PNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRF 225 (465)
Q Consensus 152 ~~~~~DiI~~~~~~-~~~~~~---~~~--p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (465)
+..+.+=+++|+.. ...|++ ..+ .+..|.+.|- |++... ..+...+...+.+ ..
T Consensus 75 ~~~r~~kff~HGqFn~~lwlaLl~g~~~~~k~~WhIWGa-------DLYe~~--------~~~k~rlfy~lRr-----~a 134 (360)
T PF07429_consen 75 KADRADKFFLHGQFNPWLWLALLFGKIKLKKCYWHIWGA-------DLYEDS--------RSLKFRLFYFLRR-----LA 134 (360)
T ss_pred hhCccceEEEeccCcHHHHHHHHcCCccccceEEEEeCc-------hhhccc--------cccchhHHHHHHH-----HH
Confidence 45678888888742 222332 222 2366777763 333221 1111223333333 33
Q ss_pred hcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeecc-ccccCHHH
Q 044542 226 FSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRL-VRDKGHPL 304 (465)
Q Consensus 226 ~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl-~~~Kg~~~ 304 (465)
.++..+|++ .+.....+++.++..+......|..+|.......... ..++++.| .+|+- ++..++..
T Consensus 135 q~rvg~V~a-t~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~~~~~----------~~~~~ltI-LvGNSgd~sNnHie 202 (360)
T PF07429_consen 135 QKRVGHVFA-TRGDLAYFQQRYPRVPASLLYFPTRMDPALTLSEKNK----------KNKGKLTI-LVGNSGDPSNNHIE 202 (360)
T ss_pred HhhcCeEEE-EcchHHHHHHHcCCCCceEEEcCCCCchhhhcccccc----------CCCCceEE-EEcCCCCCCccHHH
Confidence 466777766 5677788888886444444444444443321111110 11233666 35554 55667766
Q ss_pred HHHHHHHhhhcCCCeEEEE-EeCCc-chhHH---HH----h-c-CCeEE-cCCCChhHHHHHHHhcCeEEecccCCCCCc
Q 044542 305 LYEAFSSITRDHPGVYLLV-AGTGP-WGRRY---AE----L-G-QNVKV-LGALEAHQLSEFYNALDVFVNPTLRPQGLD 372 (465)
Q Consensus 305 ll~a~~~l~~~~~~~~l~i-vG~g~-~~~~~---~~----l-~-~~V~~-~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~ 372 (465)
+++++++.. +.++++++ .|-|. .+++. ++ + + +++.. ..++|.+|..++++.||+.++...+-+|.|
T Consensus 203 aL~~L~~~~--~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiG 280 (360)
T PF07429_consen 203 ALEALKQQF--GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIG 280 (360)
T ss_pred HHHHHHHhc--CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHh
Confidence 666665532 34677665 35443 23333 22 2 2 57765 579999999999999999999987778888
Q ss_pred HHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC---CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHH
Q 044542 373 LTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP---NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKM 449 (465)
Q Consensus 373 ~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~ 449 (465)
+.++ .+.+|+||+.++....- ..+.+...-+++.. |...+.++=+++..-+. +. -.|...+.
T Consensus 281 nI~l-Ll~~G~~v~L~~~np~~-~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~~dk-----------~~--iaFf~pny 345 (360)
T PF07429_consen 281 NICL-LLQLGKKVFLSRDNPFW-QDLKEQGIPVLFYGDELDEALVREAQRQLANVDK-----------QQ--IAFFAPNY 345 (360)
T ss_pred HHHH-HHHcCCeEEEecCChHH-HHHHhCCCeEEeccccCCHHHHHHHHHHHhhCcc-----------cc--eeeeCCch
Confidence 7666 99999999988766655 33333434455542 55555555444443311 11 12555666
Q ss_pred HHHHHHHHHHhc
Q 044542 450 ASAYERFFLRMK 461 (465)
Q Consensus 450 ~~~~~~~~~~~~ 461 (465)
.+.|.+.+.-..
T Consensus 346 ~~~w~~~l~~~~ 357 (360)
T PF07429_consen 346 LQGWRQALRLAA 357 (360)
T ss_pred HHHHHHHHHHHh
Confidence 666666665443
No 139
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=5.6e-06 Score=77.07 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=78.1
Q ss_pred hHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcc---eeeeeeC-CceEEe-C-----C--CHHHHHH
Q 044542 349 HQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIV---RTVVVNE-ELGYTF-S-----P--NVKSFVE 416 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~---~e~v~~~-~~G~l~-~-----~--d~~~la~ 416 (465)
-+..++.+.|.+.|+||++ |++|.+..|.-.+|+|-|+|+..|.. +|.+.+. ..|+.+ + + ++++|++
T Consensus 492 lDYeeFVRGCHLGVFPSYY-EPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~ 570 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSYY-EPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLAS 570 (692)
T ss_pred CCHHHHhcccccccccccc-CCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHH
Confidence 4678899999999999987 99999999999999999999987653 2444433 345543 2 2 6788888
Q ss_pred HHHHHHhCChHHHHHHHHH-HHHHHHhhCCHHHHHHHHHHHH
Q 044542 417 ALELVIRDGPKVLQRKGLA-CKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 417 ~i~~ll~~~~~~~~~~~~~-~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
-|..+... .+++++.++ --++...-.+|..+...|.+.=
T Consensus 571 ~m~~F~~q--sRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR 610 (692)
T KOG3742|consen 571 FMYEFCKQ--SRRQRIIQRNRTERLSDLLDWKYLGRYYRKAR 610 (692)
T ss_pred HHHHHHHH--HHHHHHHHhcchhhHHHHHhHHHHhHHHHHHH
Confidence 88888876 345555543 3455556678998888776643
No 140
>PLN03007 UDP-glucosyltransferase family protein
Probab=98.29 E-value=0.0057 Score=61.27 Aligned_cols=116 Identities=12% Similarity=-0.022 Sum_probs=68.2
Q ss_pred cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeee-CCceEEe-----
Q 044542 337 GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVN-EELGYTF----- 407 (465)
Q Consensus 337 ~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~-~~~G~l~----- 407 (465)
+.++++.+++|+. ++|..+++..+-++. | -++++||+.+|+|+|+-...+-.. ..+.+ -+.|+-+
T Consensus 344 ~~g~~v~~w~PQ~---~iL~h~~v~~fvtH~--G-~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~ 417 (482)
T PLN03007 344 GKGLIIRGWAPQV---LILDHQATGGFVTHC--G-WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKL 417 (482)
T ss_pred cCCEEEecCCCHH---HHhccCccceeeecC--c-chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccc
Confidence 3788999999865 467777774443432 3 359999999999999976533210 11111 1223222
Q ss_pred -----CC-CHHHHHHHHHHHHhCC-----hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 044542 408 -----SP-NVKSFVEALELVIRDG-----PKVLQRKGLACKEHALSMFTATKMASAYERFFL 458 (465)
Q Consensus 408 -----~~-d~~~la~~i~~ll~~~-----~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 458 (465)
.. +.+++.+++++++.++ ++..+++++.+++.+.+.=|..+..+++.+.+.
T Consensus 418 ~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~~ 479 (482)
T PLN03007 418 VKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEELN 479 (482)
T ss_pred cccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 23 8899999999999872 122334455555555543333344444444443
No 141
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=98.26 E-value=0.0048 Score=60.93 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=76.5
Q ss_pred CcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCC-----cc----h-hHHHHhcCCeEEcCCCChhHHHHHH
Q 044542 286 VSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTG-----PW----G-RRYAELGQNVKVLGALEAHQLSEFY 355 (465)
Q Consensus 286 ~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g-----~~----~-~~~~~l~~~V~~~g~v~~~~~~~~~ 355 (465)
+..+.+.+|.... -..+.+.+.+.-|......+ +.++..+ .. . ...++..++..+.+++|+.+ ++
T Consensus 264 ~sVvyvsfGS~~~-~~~~q~~ela~gLe~s~~~F-lWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~---iL 338 (451)
T PLN02410 264 NSVIFVSLGSLAL-MEINEVMETASGLDSSNQQF-LWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKE---VL 338 (451)
T ss_pred CcEEEEEcccccc-CCHHHHHHHHHHHHhcCCCe-EEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHH---Hh
Confidence 3477778888753 22334444444443332222 3333321 11 1 22333447888889998777 55
Q ss_pred HhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeeeC-CceEEeCC--CHHHHHHHHHHHHhC
Q 044542 356 NALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVNE-ELGYTFSP--NVKSFVEALELVIRD 424 (465)
Q Consensus 356 ~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~~-~~G~l~~~--d~~~la~~i~~ll~~ 424 (465)
...++..+-++. |+ ++++||+++|+|+|+-...+-.. ..+.+. +.|+-+.. +.+++++++++++.+
T Consensus 339 ~h~~v~~fvtH~--G~-nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~ 410 (451)
T PLN02410 339 SHPAVGGFWSHC--GW-NSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVE 410 (451)
T ss_pred CCCccCeeeecC--ch-hHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcC
Confidence 555553332322 32 58999999999999876533210 122322 56776643 899999999999977
No 142
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.16 E-value=2.5e-05 Score=73.83 Aligned_cols=131 Identities=8% Similarity=0.005 Sum_probs=80.2
Q ss_pred hcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeecccc--ccCHH
Q 044542 226 FSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVR--DKGHP 303 (465)
Q Consensus 226 ~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~--~Kg~~ 303 (465)
-+.+|++.+.=+...+.+ | .++.++.|++-.. ..... +. ++++ +.+.++.|+-.. .+-+.
T Consensus 125 ~k~~d~vl~ifPFE~~~y----g---~~~~~VGhPl~d~-~~~~~-------~~--~~~~-~~I~llPGSR~~Ei~~llP 186 (347)
T PRK14089 125 EKYCDFLASILPFEVQFY----Q---SKATYVGHPLLDE-IKEFK-------KD--LDKE-GTIAFMPGSRKSEIKRLMP 186 (347)
T ss_pred HHHHhhhhccCCCCHHHh----C---CCCEEECCcHHHh-hhhhh-------hh--cCCC-CEEEEECCCCHHHHHHHHH
Confidence 356677777666555554 4 3456788875322 11111 11 1222 466667776532 35556
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhc---CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHH
Q 044542 304 LLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELG---QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMH 380 (465)
Q Consensus 304 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~---~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma 380 (465)
.+++++.++.++. ..+++.|.... +.+++.. ..+.+.+ +..+++++||+.+..| |++.+|++.
T Consensus 187 ~~~~aa~~L~~~~--~~~~i~~a~~~-~~i~~~~~~~~~~~~~~-----~~~~~m~~aDlal~~S------GT~TLE~al 252 (347)
T PRK14089 187 IFKELAKKLEGKE--KILVVPSFFKG-KDLKEIYGDISEFEISY-----DTHKALLEAEFAFICS------GTATLEAAL 252 (347)
T ss_pred HHHHHHHHHhhcC--cEEEEeCCCcH-HHHHHHHhcCCCcEEec-----cHHHHHHhhhHHHhcC------cHHHHHHHH
Confidence 7779999988753 67888876543 4444422 2334332 4568999999999754 457889999
Q ss_pred cCCeEEec
Q 044542 381 CGRTVLTP 388 (465)
Q Consensus 381 ~G~PvI~s 388 (465)
+|+|.|..
T Consensus 253 ~g~P~Vv~ 260 (347)
T PRK14089 253 IGTPFVLA 260 (347)
T ss_pred hCCCEEEE
Confidence 99999863
No 143
>PLN02210 UDP-glucosyl transferase
Probab=98.10 E-value=0.013 Score=58.05 Aligned_cols=161 Identities=12% Similarity=0.032 Sum_probs=90.6
Q ss_pred CcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEE-EeCCc---chhHHHHh--cCCeEEcCCCChhHHHHHHHhcC
Q 044542 286 VSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLV-AGTGP---WGRRYAEL--GQNVKVLGALEAHQLSEFYNALD 359 (465)
Q Consensus 286 ~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~g~---~~~~~~~l--~~~V~~~g~v~~~~~~~~~~~aD 359 (465)
++.+.+.+|..... ..+.+-+.+..+...+ ..+++ ++... ..+.+++. .++..+.+++|+.+ +++.++
T Consensus 269 ~svvyvsfGS~~~~-~~~~~~e~a~~l~~~~--~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~---iL~h~~ 342 (456)
T PLN02210 269 SSVVYISFGSMLES-LENQVETIAKALKNRG--VPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEK---ILSHMA 342 (456)
T ss_pred CceEEEEecccccC-CHHHHHHHHHHHHhCC--CCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHH---HhcCcC
Confidence 34666678886532 2333444444444332 23333 44221 12223332 25556789998765 677777
Q ss_pred eEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeee-CCceEEeC------C-CHHHHHHHHHHHHhCCh--
Q 044542 360 VFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVN-EELGYTFS------P-NVKSFVEALELVIRDGP-- 426 (465)
Q Consensus 360 v~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~-~~~G~l~~------~-d~~~la~~i~~ll~~~~-- 426 (465)
+..+-++. |+ ++++||+.+|+|+|+-...+-.. ..+.+ -+.|+.+. . +.+++++++++++.++.
T Consensus 343 vg~FitH~--G~-nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~ 419 (456)
T PLN02210 343 ISCFVTHC--GW-NSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAA 419 (456)
T ss_pred cCeEEeeC--Cc-ccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHH
Confidence 44443432 32 48999999999999976543210 12333 35676663 3 78999999999997621
Q ss_pred ---HHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 044542 427 ---KVLQRKGLACKEHALSMFTATKMASAYER 455 (465)
Q Consensus 427 ---~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 455 (465)
+..+++++.+++.+.+.=|..+..+.+.+
T Consensus 420 ~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~ 451 (456)
T PLN02210 420 DIRRRAAELKHVARLALAPGGSSARNLDLFIS 451 (456)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 23345566666666665455444444433
No 144
>PLN00414 glycosyltransferase family protein
Probab=97.95 E-value=0.025 Score=55.83 Aligned_cols=207 Identities=12% Similarity=0.011 Sum_probs=106.2
Q ss_pred HhhcccCEEEEeChhHHH-HHHHHhCCC-CCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccC
Q 044542 224 RFFSSYNQHICISNSAAE-VLVKIYQLP-QRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKG 301 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~-~~~~~~~~~-~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg 301 (465)
..+.+++.+++.|-...| .+.+.+.-. ..++.-|.+-+....-..........-+-+.-.+.++.+.+.+|..... .
T Consensus 188 ~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~-~ 266 (446)
T PLN00414 188 KGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFF-E 266 (446)
T ss_pred HhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccC-C
Confidence 345678999888854333 333333110 1245545443321100000000011112222233445777788887543 2
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEEe---CCc----chhHH-HHhc-CCeEEcCCCChhHHHHHHHhc--CeEEecccCCCC
Q 044542 302 HPLLYEAFSSITRDHPGVYLLVAG---TGP----WGRRY-AELG-QNVKVLGALEAHQLSEFYNAL--DVFVNPTLRPQG 370 (465)
Q Consensus 302 ~~~ll~a~~~l~~~~~~~~l~ivG---~g~----~~~~~-~~l~-~~V~~~g~v~~~~~~~~~~~a--Dv~v~ps~~~eg 370 (465)
.+.+.+....|...+.++-.++.. .+. ..+.+ ++.+ ....+.|++|+.+ ++... +++|. +. |
T Consensus 267 ~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~---vL~h~~v~~fvt--H~--G 339 (446)
T PLN00414 267 KDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPL---ILSHPSVGCFVN--HC--G 339 (446)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHH---HhcCCccceEEe--cC--c
Confidence 345666666555544444333332 111 11112 2222 4566679998776 45555 44554 22 2
Q ss_pred CcHHHHHHHHcCCeEEecCCCCcce---eee-eeCCceEEeC-----C-CHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 044542 371 LDLTLIEAMHCGRTVLTPNYPSIVR---TVV-VNEELGYTFS-----P-NVKSFVEALELVIRDGPKVLQRKGLACKEH 439 (465)
Q Consensus 371 ~~~~~~EAma~G~PvI~s~~gg~~~---e~v-~~~~~G~l~~-----~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 439 (465)
-++++||+.+|+|+|+-...+-.. ..+ ..-+.|+.+. . +.+++.+++++++.++.+..+++.+++++.
T Consensus 340 -~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~ 417 (446)
T PLN00414 340 -FGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKL 417 (446)
T ss_pred -hhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Confidence 369999999999999976432110 122 2345666662 2 889999999999987434445555554443
No 145
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.94 E-value=0.00016 Score=70.42 Aligned_cols=181 Identities=18% Similarity=0.263 Sum_probs=128.0
Q ss_pred ccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEE-----eCCcchhHHHHhc---CCeEEcCCC
Q 044542 275 RFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVA-----GTGPWGRRYAELG---QNVKVLGAL 346 (465)
Q Consensus 275 ~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~iv-----G~g~~~~~~~~l~---~~V~~~g~v 346 (465)
..|..+|+|++. ++++.+..+ .|=-...++.+..+.+..|+-.|.+. |+...+.+.++++ ++|.|..-.
T Consensus 748 P~r~~y~Lp~d~-vvf~~FNqL--yKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va 824 (966)
T KOG4626|consen 748 PTRSQYGLPEDA-VVFCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVA 824 (966)
T ss_pred CCCCCCCCCCCe-EEEeechhh--hcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeecccc
Confidence 478899999886 666555544 45445678888888888888766664 4444455666666 899999988
Q ss_pred ChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce----eeeeeCCceEEeCCCHHHHHHHHHHHH
Q 044542 347 EAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR----TVVVNEELGYTFSPNVKSFVEALELVI 422 (465)
Q Consensus 347 ~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~----e~v~~~~~G~l~~~d~~~la~~i~~ll 422 (465)
..+|-..-.+-+||.+-+-.+ .| -.+-+|.+.+|+|+|+-....++. ..+..-+.|-++..+.++..+.-.++.
T Consensus 825 ~k~eHvrr~~LaDv~LDTplc-nG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~La 902 (966)
T KOG4626|consen 825 AKEEHVRRGQLADVCLDTPLC-NG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLA 902 (966)
T ss_pred chHHHHHhhhhhhhcccCcCc-CC-cccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhh
Confidence 788888889999999986554 22 246789999999999865433321 112223445555558889998888898
Q ss_pred hCChHHHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHhc
Q 044542 423 RDGPKVLQRKGLACKEHALS--MFTATKMASAYERFFLRMK 461 (465)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~~~~~~~ 461 (465)
.| .+.++.+..+-+..... -|+-...+..++++|.++-
T Consensus 903 td-~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW 942 (966)
T KOG4626|consen 903 TD-KEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMW 942 (966)
T ss_pred cC-HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHH
Confidence 88 77888777765554332 4788888888888887653
No 146
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=97.94 E-value=0.00039 Score=63.38 Aligned_cols=163 Identities=12% Similarity=0.106 Sum_probs=102.2
Q ss_pred eeEEEEeC-CCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCC--CCCCcccCCcceEEEeecCCCcc------cc
Q 044542 80 LKLAVFSK-TWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDR--KPHNDVHQGNLHVHFAANDHGSV------NL 150 (465)
Q Consensus 80 mkIl~v~~-~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~------~~ 150 (465)
|+|++++. .||. ..||.+..+.+|++.|.+.-+.|..++..... ....++..+...++.++...... ..
T Consensus 1 ~~V~ll~EGtYPy--v~GGVSsW~~~LI~glpe~~F~v~~i~a~~~~~~~~~y~lP~NV~~v~~v~L~~~~~~~~~~~~~ 78 (268)
T PF11997_consen 1 MDVCLLTEGTYPY--VRGGVSSWVHQLIRGLPEHEFHVYAIGANPEDYGEPRYELPENVVEVREVPLWGEEDGSPFPRRR 78 (268)
T ss_pred CeEEEEecCcCCC--CCCchhHHHHHHHhcCCCceEEEEEEeCCccccCCCcccCCCCcceEEEEECCCccccccccccc
Confidence 79999996 6774 88999999999999999977777777777544 33446666766665554322110 00
Q ss_pred C-------------------------------------------------------------------------------
Q 044542 151 N------------------------------------------------------------------------------- 151 (465)
Q Consensus 151 ~------------------------------------------------------------------------------- 151 (465)
.
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~w~~~~~~~~~~~~~~sf~d~fw~~r~~ 158 (268)
T PF11997_consen 79 RGRRRFFDLLEELHEALRDPVPGDEEDWDEALYGLAEYARRYDLEDFLRSEEFWDALTEAYREYYPDPSFTDYFWTIRSM 158 (268)
T ss_pred hhhhhHHHHHHHHHHHHHcccccchhHHHHHHHHHHhhccCCCHHHHHCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 0
Q ss_pred ----------CCCCCcEEEecCCchhHHh------hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhh
Q 044542 152 ----------NDGAFDYVHTESVSLPHWR------AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEA 215 (465)
Q Consensus 152 ----------~~~~~DiI~~~~~~~~~~~------~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (465)
.-.+.|++|+.+.+.+..+ ..+.| ++++-||+.......++...-.- .....++..+...
T Consensus 159 ~~~l~~ll~~~lP~advyHsvstGyAgl~g~~~k~~~g~P-~lLTEHGIY~RER~~ei~~a~w~---~~~~~~r~~wi~~ 234 (268)
T PF11997_consen 159 HLPLFPLLAEPLPKADVYHSVSTGYAGLLGALAKYRYGRP-FLLTEHGIYTREREIEILQADWI---WESPYVRDLWIRF 234 (268)
T ss_pred HHHHHHHhcccCCCCCEEecCCccHHHHHHHHHHHHhCCC-EEEecCCccHHHHHHHHHhcccc---cchHHHHHHHHHH
Confidence 4457799999887544333 23678 99999998765433333221100 0012223333344
Q ss_pred hHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCC
Q 044542 216 MPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQ 251 (465)
Q Consensus 216 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~ 251 (465)
+..+.. ..++.||.|+++.+..+++-.+ +|.++
T Consensus 235 f~~l~~--~~Y~~Ad~I~~l~~~n~~~q~~-~Ga~~ 267 (268)
T PF11997_consen 235 FESLSR--LAYRAADRITPLYEYNREWQIE-LGADP 267 (268)
T ss_pred HHHHHH--HHHHhhCeecccchhhHHHHHH-hCCCC
Confidence 443333 6689999999999975555444 67554
No 147
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.75 E-value=7.8e-07 Score=75.63 Aligned_cols=107 Identities=21% Similarity=0.351 Sum_probs=67.0
Q ss_pred EEEEeCCcchhHHHHh---cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce--
Q 044542 321 LLVAGTGPWGRRYAEL---GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR-- 395 (465)
Q Consensus 321 l~ivG~g~~~~~~~~l---~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~-- 395 (465)
+++.|.....+...+. ..+|.+.+++ +++.++++.||++|. + +-+.++.|++++|+|.|.-..++..+
T Consensus 35 iv~~G~~~~~~~~~~~~~~~~~v~~~~~~--~~m~~~m~~aDlvIs---~--aG~~Ti~E~l~~g~P~I~ip~~~~~~~~ 107 (167)
T PF04101_consen 35 IVQTGKNNYEELKIKVENFNPNVKVFGFV--DNMAELMAAADLVIS---H--AGAGTIAEALALGKPAIVIPLPGAADNH 107 (167)
T ss_dssp CCCCTTCECHHHCCCHCCTTCCCEEECSS--SSHHHHHHHHSEEEE---C--S-CHHHHHHHHCT--EEEE--TTT-T-C
T ss_pred EEEECCCcHHHHHHHHhccCCcEEEEech--hhHHHHHHHcCEEEe---C--CCccHHHHHHHcCCCeeccCCCCcchHH
Confidence 4455655333322222 2689999998 579999999999986 2 22469999999999999876665210
Q ss_pred -----eeeeeCCceEEeCC---CHHHHHHHHHHHHhCChHHHHHHHHH
Q 044542 396 -----TVVVNEELGYTFSP---NVKSFVEALELVIRDGPKVLQRKGLA 435 (465)
Q Consensus 396 -----e~v~~~~~G~l~~~---d~~~la~~i~~ll~~~~~~~~~~~~~ 435 (465)
..+.+...|..+.. +++.|.++|.+++.+ +....++.++
T Consensus 108 q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~-~~~~~~~~~~ 154 (167)
T PF04101_consen 108 QEENAKELAKKGAAIMLDESELNPEELAEAIEELLSD-PEKLKEMAKA 154 (167)
T ss_dssp HHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCC-HH-SHHHCCC
T ss_pred HHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcC-cHHHHHHHHH
Confidence 11223334444443 578899999999998 6655555444
No 148
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.60 E-value=0.089 Score=51.94 Aligned_cols=130 Identities=12% Similarity=-0.001 Sum_probs=75.1
Q ss_pred CcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeC-Cc-c-hhHHHHh-cCCeEEcCCCChhHHHHHHHhcCeE
Q 044542 286 VSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGT-GP-W-GRRYAEL-GQNVKVLGALEAHQLSEFYNALDVF 361 (465)
Q Consensus 286 ~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~-~-~~~~~~l-~~~V~~~g~v~~~~~~~~~~~aDv~ 361 (465)
++.+.+.+|.... -..+.+.+.+.-| .. .++-.++-.+ .. . +...++. ++++.+.+++|+.+ +++..++.
T Consensus 264 ~svvyvsfGS~~~-~~~~~~~ela~gL-s~-~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~---iL~H~~v~ 337 (449)
T PLN02173 264 GSVVYIAFGSMAK-LSSEQMEEIASAI-SN-FSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQ---VLSNKAIG 337 (449)
T ss_pred CceEEEEeccccc-CCHHHHHHHHHHh-cC-CCEEEEEeccchhcccchHHHhhcCCceEEeCCCCHHH---HhCCCccc
Confidence 3467777887643 2333444444444 22 2333333211 11 1 1223333 47899999998665 66777755
Q ss_pred EecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeeeC-CceEEeC------C-CHHHHHHHHHHHHhC
Q 044542 362 VNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVNE-ELGYTFS------P-NVKSFVEALELVIRD 424 (465)
Q Consensus 362 v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~~-~~G~l~~------~-d~~~la~~i~~ll~~ 424 (465)
.+-++. -.++++||+++|+|+|+-..-+-.. ..+.+. +.|+-+. . +.+++++++.+++.+
T Consensus 338 ~FvtHc---GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~ 408 (449)
T PLN02173 338 CFMTHC---GWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEG 408 (449)
T ss_pred eEEecC---ccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcC
Confidence 554532 2369999999999999976432110 123322 3455442 1 679999999999976
No 149
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.51 E-value=0.0043 Score=59.16 Aligned_cols=105 Identities=12% Similarity=0.105 Sum_probs=72.3
Q ss_pred cccccCCCCCCcEEEEEeecc-ccccCHH--HHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhc----CC-eEEcCCCC
Q 044542 276 FPEKLGVPANVSLVMGVAGRL-VRDKGHP--LLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELG----QN-VKVLGALE 347 (465)
Q Consensus 276 ~r~~~g~~~~~~~~l~~~Grl-~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~----~~-V~~~g~v~ 347 (465)
+..+++++.+++++++..|.- .+.|... .+.+.+..+.++ +.++++.|...+.+..+++. +. +.+.|..+
T Consensus 164 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~s 241 (334)
T TIGR02195 164 ALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETS 241 (334)
T ss_pred HHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCC
Confidence 344556655556777777763 4566544 777777777653 47788999766655544443 33 34678888
Q ss_pred hhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEec
Q 044542 348 AHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTP 388 (465)
Q Consensus 348 ~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s 388 (465)
-.++..+++.||++|-. ++- .+==|.|.|+|+|+-
T Consensus 242 L~el~ali~~a~l~I~~----DSG--p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 242 LDEAVDLIALAKAVVTN----DSG--LMHVAAALNRPLVAL 276 (334)
T ss_pred HHHHHHHHHhCCEEEee----CCH--HHHHHHHcCCCEEEE
Confidence 89999999999999974 222 444588999999974
No 150
>PLN02207 UDP-glycosyltransferase
Probab=97.47 E-value=0.021 Score=56.59 Aligned_cols=225 Identities=12% Similarity=0.008 Sum_probs=113.6
Q ss_pred HhhcccCEEEEeChhHHHH-HHHHhCC-C-CCCEEEecCCCCCCCccCCc----ccCcccccccCCCCCCcEEEEEeecc
Q 044542 224 RFFSSYNQHICISNSAAEV-LVKIYQL-P-QRNVHVILNGVDETKFVHDP----EAGVRFPEKLGVPANVSLVMGVAGRL 296 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~-~~~~~~~-~-~~ki~vi~ngvd~~~~~~~~----~~~~~~r~~~g~~~~~~~~l~~~Grl 296 (465)
..+++++.+++.|....+. ..+.+.- + ..++.-|..-..... .+.+ ....++.+-+.-.+.+..+.+.+|..
T Consensus 207 ~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~-~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~ 285 (468)
T PLN02207 207 ILFTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKA-QPHPEQDLARRDELMKWLDDQPEASVVFLCFGSM 285 (468)
T ss_pred HhcccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCccccc-CCCCccccchhhHHHHHHhcCCCCcEEEEEeccC
Confidence 3467899999999776664 3332310 1 124444433221110 0000 00011222222222334666678876
Q ss_pred cc--ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcc-------hhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccC
Q 044542 297 VR--DKGHPLLYEAFSSITRDHPGVYLLVAGTGPW-------GRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLR 367 (465)
Q Consensus 297 ~~--~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-------~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~ 367 (465)
.. .+-++.+..+++.+ +.--+..+.+... ....++..+++.+.+|+|+.++ ++...+..+-++.
T Consensus 286 ~~~~~~q~~ela~~l~~~----~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~I---L~H~~vg~FvTH~ 358 (468)
T PLN02207 286 GRLRGPLVKEIAHGLELC----QYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEI---LAHKAVGGFVSHC 358 (468)
T ss_pred cCCCHHHHHHHHHHHHHC----CCcEEEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHH---hcccccceeeecC
Confidence 42 23344555555554 2212333442111 1222334577888899987775 4444443333322
Q ss_pred CCCCcHHHHHHHHcCCeEEecCCCCcce---eeeee-CCceEEe---------CC-CHHHHHHHHHHHHhC-ChH---HH
Q 044542 368 PQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVN-EELGYTF---------SP-NVKSFVEALELVIRD-GPK---VL 429 (465)
Q Consensus 368 ~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~-~~~G~l~---------~~-d~~~la~~i~~ll~~-~~~---~~ 429 (465)
|+ ++++||+.+|+|+|+-...+-.. ..+.+ -+.|+-+ .. +.+++.++|.+++.+ .++ ..
T Consensus 359 --Gw-nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a 435 (468)
T PLN02207 359 --GW-NSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRV 435 (468)
T ss_pred --cc-ccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHH
Confidence 32 48899999999999976543210 11222 3445422 13 789999999999962 122 23
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 044542 430 QRKGLACKEHALSMFTATKMASAYERFFLR 459 (465)
Q Consensus 430 ~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 459 (465)
+++++.+++.+.+-=|..+..+++.+-+..
T Consensus 436 ~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 436 MDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 344455555555544555555555554443
No 151
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.46 E-value=0.0074 Score=57.45 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=70.6
Q ss_pred CcEEEEEee-ccccccCHH--HHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhc----CCeEEcCCCChhHHHHHHHhc
Q 044542 286 VSLVMGVAG-RLVRDKGHP--LLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELG----QNVKVLGALEAHQLSEFYNAL 358 (465)
Q Consensus 286 ~~~~l~~~G-rl~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~----~~V~~~g~v~~~~~~~~~~~a 358 (465)
++++++..| .-...|... .+.+.+..+.+++ .++++.|+..+.+..+++. ..+.+.|..+-+++..+++.|
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a 252 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGA 252 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcC
Confidence 357777888 655677654 6777778887765 7889999876555555554 233389999999999999999
Q ss_pred CeEEecccCCCCCcHHHHHHHHcCCeEEecC
Q 044542 359 DVFVNPTLRPQGLDLTLIEAMHCGRTVLTPN 389 (465)
Q Consensus 359 Dv~v~ps~~~eg~~~~~~EAma~G~PvI~s~ 389 (465)
|++|-+.. | .+-=|.|.|+|+|+--
T Consensus 253 ~l~I~~DS---g---~~HlAaA~~~P~I~iy 277 (334)
T COG0859 253 DLVIGNDS---G---PMHLAAALGTPTIALY 277 (334)
T ss_pred CEEEccCC---h---HHHHHHHcCCCEEEEE
Confidence 99987531 2 4445899999999843
No 152
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.44 E-value=0.16 Score=50.75 Aligned_cols=114 Identities=8% Similarity=0.081 Sum_probs=67.4
Q ss_pred CCeEEcCCCChhHHHHHHHh--cCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeee-eCCceEEeC---
Q 044542 338 QNVKVLGALEAHQLSEFYNA--LDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVV-NEELGYTFS--- 408 (465)
Q Consensus 338 ~~V~~~g~v~~~~~~~~~~~--aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~-~~~~G~l~~--- 408 (465)
.++++.+++|+.+ ++.. .+++|. + -| -++++||+++|+|+|+-...+-.. ..+. .-+.|+.+.
T Consensus 343 ~g~~v~~w~PQ~~---vL~h~~v~~fvt--H--~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~ 414 (477)
T PLN02863 343 RGLVIRGWAPQVA---ILSHRAVGAFLT--H--CG-WNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGA 414 (477)
T ss_pred CCEEecCCCCHHH---HhcCCCcCeEEe--c--CC-chHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCC
Confidence 5788889998655 5555 455554 2 23 358999999999999866533110 1222 225566551
Q ss_pred --C-CHHHHHHHHHHHHhCChHH---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 044542 409 --P-NVKSFVEALELVIRDGPKV---LQRKGLACKEHALSMFTATKMASAYERFFLR 459 (465)
Q Consensus 409 --~-d~~~la~~i~~ll~~~~~~---~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 459 (465)
. +.+++.+++.+++..+++. .+++++.+++.+.+.=|..+..+++.+.+.+
T Consensus 415 ~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~ 471 (477)
T PLN02863 415 DTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVE 471 (477)
T ss_pred CCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 2 6789999999988432332 2334444555554433455555555555443
No 153
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.38 E-value=0.00089 Score=67.78 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=78.4
Q ss_pred CCcEEEEEeeccccc---cCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeE
Q 044542 285 NVSLVMGVAGRLVRD---KGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVF 361 (465)
Q Consensus 285 ~~~~~l~~~Grl~~~---Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~ 361 (465)
+++.+++..|..... +-.+.+++|++.+ |+ ++++.-++.. ...+.+|+.+..|+|+.+ +++...+-
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~----~~-~~iW~~~~~~---~~~l~~n~~~~~W~PQ~~---lL~hp~v~ 343 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENL----PQ-RFIWKYEGEP---PENLPKNVLIVKWLPQND---LLAHPRVK 343 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCS----TT-EEEEEETCSH---GCHHHTTEEEESS--HHH---HHTSTTEE
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhC----CC-cccccccccc---cccccceEEEeccccchh---hhhcccce
Confidence 344777788887531 1133445555554 55 5666554422 234458999999998754 46555554
Q ss_pred EecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeeeCCceEEeCC---CHHHHHHHHHHHHhCChHHH
Q 044542 362 VNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVNEELGYTFSP---NVKSFVEALELVIRDGPKVL 429 (465)
Q Consensus 362 v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~~~~G~l~~~---d~~~la~~i~~ll~~~~~~~ 429 (465)
++=+ + |--+++.||+.+|+|+|+-..-+--. ..+++.+.|..++. +.+++.++|.+++.| +...
T Consensus 344 ~fit-H--gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~-~~y~ 413 (500)
T PF00201_consen 344 LFIT-H--GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLEN-PSYK 413 (500)
T ss_dssp EEEE-S----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHS-HHHH
T ss_pred eeee-c--cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhh-hHHH
Confidence 4434 2 33579999999999999976543210 23555667888874 789999999999998 5443
No 154
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.30 E-value=0.0018 Score=54.24 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=34.4
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCc
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKF 266 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~ 266 (465)
..+..+|..+++|.+.+..+-..+. +|+.||+-|||++.+
T Consensus 131 ~~l~~~D~~isPT~wQ~~~fP~~~r---~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 131 LALEQADAGISPTRWQRSQFPAEFR---SKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHhCCcCcCCCHHHHHhCCHHHH---cCcEEeecccchhhc
Confidence 5578899999999999998887653 899999999998754
No 155
>PLN02670 transferase, transferring glycosyl groups
Probab=97.20 E-value=0.014 Score=57.76 Aligned_cols=117 Identities=13% Similarity=0.125 Sum_probs=75.5
Q ss_pred CeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeeeCCceEEeC------C
Q 044542 339 NVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVNEELGYTFS------P 409 (465)
Q Consensus 339 ~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~~~~G~l~~------~ 409 (465)
.+.+.+|+|+.+ +++..++..+-++. | -++++||+++|+|+|+-...+-.. ..+.+.+.|+.+. .
T Consensus 340 G~vv~~W~PQ~~---IL~H~~v~~FvtHc--G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~ 413 (472)
T PLN02670 340 GMIHVGWVPQVK---ILSHESVGGFLTHC--G-WNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGS 413 (472)
T ss_pred CeEEeCcCCHHH---HhcCcccceeeecC--C-cchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCc
Confidence 377789998766 56566664443432 2 359999999999999976533110 1233446676663 2
Q ss_pred -CHHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhc
Q 044542 410 -NVKSFVEALELVIRDGP-KVLQRKGLACKEHALSMFTATKMASAYERFFLRMK 461 (465)
Q Consensus 410 -d~~~la~~i~~ll~~~~-~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 461 (465)
+.+++.+++.+++.++. +.+++-.++.++.+++.=+.+..++.+++.+.+..
T Consensus 414 ~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 414 FTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred CcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 68999999999998721 12333333344445555677888888888777654
No 156
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.19 E-value=0.049 Score=50.90 Aligned_cols=235 Identities=14% Similarity=0.045 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHHhC-CcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCccccCCCCCCcEEEecCC---chhHHhhh
Q 044542 97 GMERHASTLYHALAAR-GHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSVNLNNDGAFDYVHTESV---SLPHWRAK 172 (465)
Q Consensus 97 G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~DiI~~~~~---~~~~~~~~ 172 (465)
|.+.....|+++|... ++++..+.......... ......................||+|+..+. ....++++
T Consensus 2 Gh~~Q~~GLa~aL~~~~~~~~~~v~~~~~~~~lp----~~~~~~~~~~~~~~~~~~~~~~pdLiIsaGr~t~~~~~~l~r 77 (311)
T PF06258_consen 2 GHENQSLGLAEALGRLTPYEIKRVDVRRPWRWLP----RLLPAPLRALLKPFSPALEPPWPDLIISAGRRTAPAALALRR 77 (311)
T ss_pred chHHHHHHHHHHhcCccCcceeEeccccchhhcc----ccccchHHHhhhcccccccCCCCcEEEECCCchHHHHHHHHH
Confidence 6788899999999873 67777776655111000 0000000000001111114567999999764 23333443
Q ss_pred cCCc---EEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCC
Q 044542 173 MVPN---VAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQL 249 (465)
Q Consensus 173 ~~p~---~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~ 249 (465)
.... .|...+- . ...+.+|.+|+...+ +.
T Consensus 78 ~~gg~~~~V~i~~P-~--------------------------------------~~~~~FDlvi~p~HD---------~~ 109 (311)
T PF06258_consen 78 ASGGRTKTVQIMDP-R--------------------------------------LPPRPFDLVIVPEHD---------RL 109 (311)
T ss_pred HcCCCceEEEEcCC-C--------------------------------------CCccccCEEEECccc---------Cc
Confidence 2221 3333321 0 113567888887765 22
Q ss_pred -CCCCEEEe---cCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccC--HH---HHHHHHHHhhhcCCCeE
Q 044542 250 -PQRNVHVI---LNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKG--HP---LLYEAFSSITRDHPGVY 320 (465)
Q Consensus 250 -~~~ki~vi---~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg--~~---~ll~a~~~l~~~~~~~~ 320 (465)
...++... +|.++.+..... ...+..+++-. .++.+.+.+|.-...-. -+ .+++.+..+.+.+. ..
T Consensus 110 ~~~~Nvl~t~ga~~~i~~~~l~~a---~~~~~~~~~~l-~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~ 184 (311)
T PF06258_consen 110 PRGPNVLPTLGAPNRITPERLAEA---AAAWAPRLAAL-PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GS 184 (311)
T ss_pred CCCCceEecccCCCcCCHHHHHHH---HHhhhhhhccC-CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-Ce
Confidence 23344332 344443322221 12222333322 23355556776443322 22 55666666666654 78
Q ss_pred EEEEeCCcch----hHHHHhc---CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCC
Q 044542 321 LLVAGTGPWG----RRYAELG---QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPS 392 (465)
Q Consensus 321 l~ivG~g~~~----~~~~~l~---~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg 392 (465)
+.|..+-... +.++++. ..+.+...-+..-+..+|+.||.++++. + .-..+.||++.|+||.+...++
T Consensus 185 ~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~---D-SvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 185 LLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTE---D-SVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred EEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcC---c-cHHHHHHHHHcCCCEEEecCCC
Confidence 8888874332 2333332 5664555555566999999999999964 2 2347899999999999988776
No 157
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.18 E-value=0.035 Score=55.58 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=64.6
Q ss_pred hcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce----eeeeeCCceEEeC---
Q 044542 336 LGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR----TVVVNEELGYTFS--- 408 (465)
Q Consensus 336 l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~----e~v~~~~~G~l~~--- 408 (465)
..+++.+.+++|+.++... .+.++||. + -| -++++||+.+|+|+|+-...+-.. .++..-+.|+.+.
T Consensus 340 ~~~~g~v~~W~PQ~~iL~H-~~v~~Fvt--H--~G-~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~ 413 (481)
T PLN02554 340 TKDIGKVIGWAPQVAVLAK-PAIGGFVT--H--CG-WNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYW 413 (481)
T ss_pred hccCceEEeeCCHHHHhCC-cccCcccc--c--Cc-cchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccc
Confidence 4478888899986664322 33444553 2 23 358999999999999976543110 1122334455542
Q ss_pred ----------C-CHHHHHHHHHHHHhCChHHHH---HHHHHHHHHHHhhCCHHHHHHHHH
Q 044542 409 ----------P-NVKSFVEALELVIRDGPKVLQ---RKGLACKEHALSMFTATKMASAYE 454 (465)
Q Consensus 409 ----------~-d~~~la~~i~~ll~~~~~~~~---~~~~~~~~~~~~~fs~~~~~~~~~ 454 (465)
. +.+++.++|.+++.++++.++ ++++.+++.+.+-=|..+..+++.
T Consensus 414 ~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv 473 (481)
T PLN02554 414 RGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFI 473 (481)
T ss_pred cccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3 889999999999963243332 344444444444323333333333
No 158
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.12 E-value=0.021 Score=54.84 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=67.5
Q ss_pred ccCCCCCCcEEEEEeecc-ccccCHH--HHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhc----C-----CeEEcCCC
Q 044542 279 KLGVPANVSLVMGVAGRL-VRDKGHP--LLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELG----Q-----NVKVLGAL 346 (465)
Q Consensus 279 ~~g~~~~~~~~l~~~Grl-~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~----~-----~V~~~g~v 346 (465)
.+++..+++++++..|.- .+.|... .+.+.++.+.+ .++++++.|...+++..+++. . .+.+.|..
T Consensus 173 ~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~ 250 (348)
T PRK10916 173 AFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGET 250 (348)
T ss_pred HcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCC
Confidence 344433445776677763 3556543 56677767654 367888889766555444432 1 14567887
Q ss_pred ChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEec
Q 044542 347 EAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTP 388 (465)
Q Consensus 347 ~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s 388 (465)
+-.++..+++.||++|-. ++- .+==|.|.|+|+|+-
T Consensus 251 sL~el~ali~~a~l~I~n----DTG--p~HlAaA~g~P~val 286 (348)
T PRK10916 251 QLEQAVILIAACKAIVTN----DSG--LMHVAAALNRPLVAL 286 (348)
T ss_pred CHHHHHHHHHhCCEEEec----CCh--HHHHHHHhCCCEEEE
Confidence 889999999999999974 222 444588999999974
No 159
>PLN02764 glycosyltransferase family protein
Probab=97.11 E-value=0.11 Score=51.25 Aligned_cols=230 Identities=10% Similarity=0.020 Sum_probs=116.4
Q ss_pred HhhcccCEEEEeChhHH-HHHHHHhCCC-CCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccC
Q 044542 224 RFFSSYNQHICISNSAA-EVLVKIYQLP-QRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKG 301 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~-~~~~~~~~~~-~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg 301 (465)
..++.++.|++.|-+.. ..+.+.+.-. ..++..|.+-+.... .........-+-+.-.+.+..+.+.+|.... -.
T Consensus 195 ~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~--~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~-~~ 271 (453)
T PLN02764 195 TSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPD--KTRELEERWVKWLSGYEPDSVVFCALGSQVI-LE 271 (453)
T ss_pred HhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCcc--ccccchhHHHHHHhCCCCCceEEEeeccccc-CC
Confidence 34577889988874433 3333333110 134555544321110 0000011111222223344477778888743 23
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEEe-CCcc--h----hHH-HHh-cCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCc
Q 044542 302 HPLLYEAFSSITRDHPGVYLLVAG-TGPW--G----RRY-AEL-GQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLD 372 (465)
Q Consensus 302 ~~~ll~a~~~l~~~~~~~~l~ivG-~g~~--~----~~~-~~l-~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~ 372 (465)
.+.+.+.+..|...+.++..++-- .+.. . +.+ ++. +..+.+.+|+|+.++... .+.+++|. + |--
T Consensus 272 ~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h-~~v~~Fvt--H---~G~ 345 (453)
T PLN02764 272 KDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSH-PSVGCFVS--H---CGF 345 (453)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcC-cccCeEEe--c---CCc
Confidence 345566666555544455444431 1110 1 111 111 255677799987774333 23344554 2 223
Q ss_pred HHHHHHHHcCCeEEecCCCCcce---eeee-eCCceEEeC-----C-CHHHHHHHHHHHHhCChHHHHHHHHHH---HHH
Q 044542 373 LTLIEAMHCGRTVLTPNYPSIVR---TVVV-NEELGYTFS-----P-NVKSFVEALELVIRDGPKVLQRKGLAC---KEH 439 (465)
Q Consensus 373 ~~~~EAma~G~PvI~s~~gg~~~---e~v~-~~~~G~l~~-----~-d~~~la~~i~~ll~~~~~~~~~~~~~~---~~~ 439 (465)
++++||+.+|+|+|+-...+-.. ..+. .-+.|+.+. . +.+++.+++.+++.++.+..+++.+++ ++.
T Consensus 346 nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~ 425 (453)
T PLN02764 346 GSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRET 425 (453)
T ss_pred hHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 59999999999999976543110 1232 234455431 3 789999999999987323334444433 333
Q ss_pred HHhhCCHHHHHHHHHHHHHHhcC
Q 044542 440 ALSMFTATKMASAYERFFLRMKN 462 (465)
Q Consensus 440 ~~~~fs~~~~~~~~~~~~~~~~~ 462 (465)
+++.=|..+..+++.+.+.+..+
T Consensus 426 ~~~~GSS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 426 LASPGLLTGYVDNFIESLQDLVS 448 (453)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcc
Confidence 44433555556666665555443
No 160
>PLN02555 limonoid glucosyltransferase
Probab=97.11 E-value=0.14 Score=51.15 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=70.0
Q ss_pred HHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeeeC-CceEEeC-
Q 044542 334 AELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVNE-ELGYTFS- 408 (465)
Q Consensus 334 ~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~~-~~G~l~~- 408 (465)
++..+++.+.+++|+.++... .+..++|.. . | -++++||+.+|+|+|+-..-+-.. ..+.+. +.|+.+.
T Consensus 333 ~~~~~~g~v~~W~PQ~~iL~H-~~v~~FvtH--~--G-~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~ 406 (480)
T PLN02555 333 EKAGDKGKIVQWCPQEKVLAH-PSVACFVTH--C--G-WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCR 406 (480)
T ss_pred hhcCCceEEEecCCHHHHhCC-CccCeEEec--C--C-cchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccC
Confidence 344578888999987664332 445556642 2 2 359999999999999976543110 123333 5666651
Q ss_pred ------C-CHHHHHHHHHHHHhCCh-----HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 044542 409 ------P-NVKSFVEALELVIRDGP-----KVLQRKGLACKEHALSMFTATKMASAYERFFL 458 (465)
Q Consensus 409 ------~-d~~~la~~i~~ll~~~~-----~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 458 (465)
. +.+++.+++.+++.++. +..+++++.+++.+.+.=|..+..+++.+-+.
T Consensus 407 ~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~ 468 (480)
T PLN02555 407 GEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLV 468 (480)
T ss_pred CccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2 68999999999997521 12233444455555443344444455544443
No 161
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=97.10 E-value=0.27 Score=46.70 Aligned_cols=306 Identities=14% Similarity=0.090 Sum_probs=147.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC--CcEEEEEeCCCCCCCCCcccCCcceEEEe--ec--C---CCccc-
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAAR--GHEIHVFTAPSDRKPHNDVHQGNLHVHFA--AN--D---HGSVN- 149 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~v~~~--~~--~---~~~~~- 149 (465)
||++++... +....|-+..+..+.+.|++. ..++.+++..+............+..... .. + ...+.
T Consensus 1 m~~~L~g~~---g~gN~Gdeail~all~~l~~~~~~~~~~~~~~~p~~i~~p~~~~~~p~~~~~~l~g~~k~v~R~~~k~ 77 (385)
T COG2327 1 MKALLLGYY---GFGNIGDEAILKALLDMLRRLNPDAKVLVMGRRPPVIVDPVFLSANPEGSAAGLNGRVKSVLRRRLKH 77 (385)
T ss_pred CeeEEEeee---cCCCcccHHHHHHHHHHHHhhCcccceeeeecCCcccccceeecCCcccCchhhhHHHHHHHHHhhcc
Confidence 677777653 246678899999999999865 56777777665222111111111100000 00 0 00000
Q ss_pred -----cC-CCCCCcEEEecCCchh-----------------HHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCC
Q 044542 150 -----LN-NDGAFDYVHTESVSLP-----------------HWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLP 206 (465)
Q Consensus 150 -----~~-~~~~~DiI~~~~~~~~-----------------~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 206 (465)
.. .-.+.|+++..+..+. .....+.| ++..-|+..+. ..
T Consensus 78 ~~~~~il~~l~~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp-~~~~g~svGP~-----------------~~ 139 (385)
T COG2327 78 PGLVSILSALGKADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKP-TFFFGQSVGPL-----------------KH 139 (385)
T ss_pred ccHHHHHHHhhhCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCC-EEEEeccCCCc-----------------cC
Confidence 00 3457888877643211 11113445 66666654321 11
Q ss_pred CchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCC
Q 044542 207 GSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANV 286 (465)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~ 286 (465)
...+++.+ ..++.+..+++-.+...+.++. .|++.. ... |....-+......... -+....+
T Consensus 140 ----~~s~~~~~-----~~~~~~s~i~vRD~~S~~llk~-~gi~a~---l~~---D~Af~L~~~~~~~~~~--~~~~~~~ 201 (385)
T COG2327 140 ----PLSRQLLN-----YVLGGCSAISVRDPVSYELLKQ-LGINAR---LVT---DPAFLLPASSQNATAS--DVEAREK 201 (385)
T ss_pred ----HHHHHHHH-----HHhcCCcEEEEecHHhHHHHHH-cCCCeE---eec---Ccceeccccccccccc--ccccccc
Confidence 11122211 4467788888888888888875 676432 222 4443222111100000 0111122
Q ss_pred cEEEEEeeccccc--cCH---HHHHHHHHHh---hhcCCCeEEEEEeCCcchhHHHHh----c--CCeEEcCCCChhHHH
Q 044542 287 SLVMGVAGRLVRD--KGH---PLLYEAFSSI---TRDHPGVYLLVAGTGPWGRRYAEL----G--QNVKVLGALEAHQLS 352 (465)
Q Consensus 287 ~~~l~~~Grl~~~--Kg~---~~ll~a~~~l---~~~~~~~~l~ivG~g~~~~~~~~l----~--~~V~~~g~v~~~~~~ 352 (465)
...+.+-| +.+. +.. ...-+++..+ ....-.+.++-.+..+...-.+.+ . +++.+..-...+++-
T Consensus 202 ~~~i~lr~-~~~~~t~~~~~~~~v~~~l~~~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~ 280 (385)
T COG2327 202 TVAITLRG-LHPDNTAQRSILKYVNEALDLVERQVKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELG 280 (385)
T ss_pred eEEEEecc-cCCchhhhHHHHHHHHHHHHHHHHhhhcceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHH
Confidence 23443333 3332 222 1222333332 221112233333333332222222 2 566664433246777
Q ss_pred HHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeee-CCceEEeC--C-CHHHHHHHHHHHHhCChHH
Q 044542 353 EFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVN-EELGYTFS--P-NVKSFVEALELVIRDGPKV 428 (465)
Q Consensus 353 ~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~-~~~G~l~~--~-d~~~la~~i~~ll~~~~~~ 428 (465)
..++++|+.|-.-++ +++=||+.|+|+|+-....=...+.++ +-.++..+ + |.+.+.+...+.+.+.++.
T Consensus 281 ~~l~~~dl~Vg~R~H------saI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~ 354 (385)
T COG2327 281 GILAACDLIVGMRLH------SAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLDEL 354 (385)
T ss_pred HHhccCceEEeehhH------HHHHHHhcCCCeEEEeecHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhccHHH
Confidence 899999999986655 777899999999986543211111111 22233333 4 8888988888887774554
Q ss_pred HHH
Q 044542 429 LQR 431 (465)
Q Consensus 429 ~~~ 431 (465)
+++
T Consensus 355 ~~~ 357 (385)
T COG2327 355 RER 357 (385)
T ss_pred Hhh
Confidence 443
No 162
>PLN02562 UDP-glycosyltransferase
Probab=97.10 E-value=0.019 Score=56.88 Aligned_cols=132 Identities=17% Similarity=0.101 Sum_probs=79.1
Q ss_pred EEEEEeeccc---cccCHHHHHHHHHHhhhcCCCeEEEE-EeCC---cchh-HHHHhcCCeEEcCCCChhHHHHHHHhcC
Q 044542 288 LVMGVAGRLV---RDKGHPLLYEAFSSITRDHPGVYLLV-AGTG---PWGR-RYAELGQNVKVLGALEAHQLSEFYNALD 359 (465)
Q Consensus 288 ~~l~~~Grl~---~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~g---~~~~-~~~~l~~~V~~~g~v~~~~~~~~~~~aD 359 (465)
.+.+.+|... +.+-+..+..+++.. +. .+++ +..+ ...+ ..++..+++.+.+++|+.+ ++...+
T Consensus 275 vvyvsfGS~~~~~~~~~~~~l~~~l~~~----g~-~fiW~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~---iL~h~~ 346 (448)
T PLN02562 275 VIYISFGSWVSPIGESNVRTLALALEAS----GR-PFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLE---VLKHQA 346 (448)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHC----CC-CEEEEEcCCchhhCCHHHHHHhccCEEEEecCCHHH---HhCCCc
Confidence 5666788754 233444555555554 22 3333 3321 1211 2233457899999998766 455566
Q ss_pred eEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeee-CCceEEeCC-CHHHHHHHHHHHHhCChHHHHH
Q 044542 360 VFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVN-EELGYTFSP-NVKSFVEALELVIRDGPKVLQR 431 (465)
Q Consensus 360 v~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~-~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~ 431 (465)
+..+-++. | -++++||+.+|+|+|+....+-.. ..+.+ -+.|+-+.. +.+++++++.+++.+ ++.+++
T Consensus 347 v~~fvtH~--G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~-~~~r~~ 419 (448)
T PLN02562 347 VGCYLTHC--G-WNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMED-SGMGER 419 (448)
T ss_pred cceEEecC--c-chhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCC-HHHHHH
Confidence 54443432 3 358999999999999876543210 22333 356666666 899999999999987 544433
No 163
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.07 E-value=0.16 Score=44.97 Aligned_cols=254 Identities=14% Similarity=0.066 Sum_probs=125.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCC-CccccCCCCCCcE
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDH-GSVNLNNDGAFDY 158 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~Di 158 (465)
|||-.++. ...|....+..|++.|.+.-+.+.++....-.......-... .++...... .......+..||+
T Consensus 1 ~ki~aisD------~RtGnt~QaiaLa~~l~r~eyttk~l~~~~l~~lP~~wl~~y-p~~~~~~l~~~~~~r~p~~~Pdl 73 (329)
T COG3660 1 MKIWAISD------GRTGNTHQAIALAEQLTRSEYTTKLLEYNNLAKLPNFWLAYY-PIHILRELFGPRLSRKPEQRPDL 73 (329)
T ss_pred CceEEeec------CCCccHHHHHHHHHHhhccceEEEEeeccccccCchhhhhcC-ccHhHHHhhcCccccCccCCCce
Confidence 68888876 457888899999999987546666665552221111000000 000000000 0111114567999
Q ss_pred EEecCC---chhHHhhhc--CCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEE
Q 044542 159 VHTESV---SLPHWRAKM--VPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHI 233 (465)
Q Consensus 159 I~~~~~---~~~~~~~~~--~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 233 (465)
++.-+- .+...+.+. .+ .++.+.+.. --++..|.+|
T Consensus 74 ~I~aGrrta~l~~~lkk~~~~~-~vVqI~~Pr--------------------------------------lp~~~fDlvi 114 (329)
T COG3660 74 IITAGRRTAPLAFYLKKKFGGI-KVVQIQDPR--------------------------------------LPYNHFDLVI 114 (329)
T ss_pred EEecccchhHHHHHHHHhcCCc-eEEEeeCCC--------------------------------------CCcccceEEe
Confidence 998763 222223322 23 333333311 0123457777
Q ss_pred EeChhHHHHHHHHhCCCCCCEEEe---cCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCH--H---HH
Q 044542 234 CISNSAAEVLVKIYQLPQRNVHVI---LNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGH--P---LL 305 (465)
Q Consensus 234 ~~S~~~~~~~~~~~~~~~~ki~vi---~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~--~---~l 305 (465)
+.-.+..+.... ...++.-| +|.|......+ .++.+ +.++ |..++++-+++|.-.+.-.+ + .+
T Consensus 115 vp~HD~~~~~s~----~~~Nilpi~Gs~h~Vt~~~lAa---~~e~~-~~~~-p~~rq~vAVlVGg~nk~f~~~~d~a~q~ 185 (329)
T COG3660 115 VPYHDWREELSD----QGPNILPINGSPHNVTSQRLAA---LREAF-KHLL-PLPRQRVAVLVGGNNKAFVFQEDKAHQF 185 (329)
T ss_pred ccchhhhhhhhc----cCCceeeccCCCCcccHHHhhh---hHHHH-HhhC-CCCCceEEEEecCCCCCCccCHHHHHHH
Confidence 766655554222 12344333 22232222111 12222 2333 55556777788876553333 2 22
Q ss_pred HHHHHHhhhcCCCeEEEEEeCCcchhHHHH-----hc--CCeEEcCC-CChhHHHHHHHhcCeEEecccCCCCCcHHHHH
Q 044542 306 YEAFSSITRDHPGVYLLVAGTGPWGRRYAE-----LG--QNVKVLGA-LEAHQLSEFYNALDVFVNPTLRPQGLDLTLIE 377 (465)
Q Consensus 306 l~a~~~l~~~~~~~~l~ivG~g~~~~~~~~-----l~--~~V~~~g~-v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~E 377 (465)
..++.+..++ ....+++--+-...+..+. +. .-+.+-+. ..+.-..+++++||.+|.+.. .=....|
T Consensus 186 ~~~l~k~l~~-~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaD----SinM~sE 260 (329)
T COG3660 186 ASLLVKILEN-QGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTAD----SINMCSE 260 (329)
T ss_pred HHHHHHHHHh-CCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecc----hhhhhHH
Confidence 2333322222 2455666554333333322 22 23333332 133568899999999998542 2236789
Q ss_pred HHHcCCeEEecCCCCc
Q 044542 378 AMHCGRTVLTPNYPSI 393 (465)
Q Consensus 378 Ama~G~PvI~s~~gg~ 393 (465)
|.+.|+||-+...++.
T Consensus 261 AasTgkPv~~~~~~~~ 276 (329)
T COG3660 261 AASTGKPVFILEPPNF 276 (329)
T ss_pred HhccCCCeEEEecCCc
Confidence 9999999988655443
No 164
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=97.05 E-value=0.12 Score=47.47 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=86.0
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccccccCHH
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLVRDKGHP 303 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~ 303 (465)
..+++++.+.+-.+...+.+.+ +|++. ++.++|..+= ...+.... ....+ .......+..........-.+
T Consensus 123 ~~l~~~~~i~vRD~~S~~~l~~-~g~~~-~~~~~~D~af--~l~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~ 193 (286)
T PF04230_consen 123 RILSKADYISVRDEYSYELLKK-LGISG-NVKLVPDPAF--LLPPSYPD--EDKSK---PKRNYISVSNSPSRNNEEYIE 193 (286)
T ss_pred HHHhCCCEEEECCHHHHHHHHH-cCCCC-CcEEEeCchh--hcCccccc--ccccc---cccceeeeccccchhhhhHHH
Confidence 5567889988887777775555 78765 7888776541 11111110 00000 011101121111212233455
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCcchh---HH------HHhc-CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcH
Q 044542 304 LLYEAFSSITRDHPGVYLLVAGTGPWGR---RY------AELG-QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDL 373 (465)
Q Consensus 304 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~---~~------~~l~-~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~ 373 (465)
.+.+.+..+.+.+..+.+......+... .. .... .........+.+++..+++.+|++|....+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH------ 267 (286)
T PF04230_consen 194 EIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLH------ 267 (286)
T ss_pred HHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCH------
Confidence 5666777776654445544444322211 11 1111 344555666889999999999999998776
Q ss_pred HHHHHHHcCCeEEecCC
Q 044542 374 TLIEAMHCGRTVLTPNY 390 (465)
Q Consensus 374 ~~~EAma~G~PvI~s~~ 390 (465)
..+=|+++|+|+|+-+.
T Consensus 268 ~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 GAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHcCCCEEEEec
Confidence 67779999999998654
No 165
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=96.97 E-value=0.02 Score=56.61 Aligned_cols=159 Identities=16% Similarity=0.012 Sum_probs=88.7
Q ss_pred CcEEEEEeecccc--ccCHHHHHHHHHHhhhcCCCeEEEEEeCC---------cc-------hhHHHHhcCCeEEcCCCC
Q 044542 286 VSLVMGVAGRLVR--DKGHPLLYEAFSSITRDHPGVYLLVAGTG---------PW-------GRRYAELGQNVKVLGALE 347 (465)
Q Consensus 286 ~~~~l~~~Grl~~--~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g---------~~-------~~~~~~l~~~V~~~g~v~ 347 (465)
+..+.+.+|.+.. .+.++.+..+++.... .+ +..+.+. .. ....++..++..+.+++|
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~---~f-lWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~P 336 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEGKR---PF-LWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCS 336 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCC---Ce-EEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCC
Confidence 3467778887642 4445566666666532 22 3334321 10 112223457888889998
Q ss_pred hhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeeeC-CceEEeC-----C-CHHHHHHH
Q 044542 348 AHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVNE-ELGYTFS-----P-NVKSFVEA 417 (465)
Q Consensus 348 ~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~~-~~G~l~~-----~-d~~~la~~ 417 (465)
+.+ +++..++..+-++. | -++++||+.+|+|+|+-...+-.. ..+.+. +.|+-+. . +.++++++
T Consensus 337 Q~~---iL~h~~vg~fvtH~--G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~a 410 (455)
T PLN02152 337 QIE---VLRHRAVGCFVTHC--G-WSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRC 410 (455)
T ss_pred HHH---HhCCcccceEEeeC--C-cccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHH
Confidence 665 67777765554532 2 359999999999999876532110 122221 2344432 2 78999999
Q ss_pred HHHHHhCChH----HHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 044542 418 LELVIRDGPK----VLQRKGLACKEHALSMFTATKMASAYE 454 (465)
Q Consensus 418 i~~ll~~~~~----~~~~~~~~~~~~~~~~fs~~~~~~~~~ 454 (465)
+.+++.++.+ ...++++.+++.+.+--|..+..+++.
T Consensus 411 v~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li 451 (455)
T PLN02152 411 LEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFV 451 (455)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 9999976221 222334445555444444444434333
No 166
>PLN00164 glucosyltransferase; Provisional
Probab=96.96 E-value=0.25 Score=49.48 Aligned_cols=81 Identities=7% Similarity=-0.031 Sum_probs=52.9
Q ss_pred CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eee-eeCCceEEeC-----
Q 044542 338 QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVV-VNEELGYTFS----- 408 (465)
Q Consensus 338 ~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v-~~~~~G~l~~----- 408 (465)
..+.+.+++|+.+ ++...++..+-++. |+ ++++||+.+|+|+|+-..-+-.. ..+ ..-+.|+.+.
T Consensus 339 ~g~~v~~w~PQ~~---iL~h~~vg~fvtH~--Gw-nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~ 412 (480)
T PLN00164 339 RGLVWPTWAPQKE---ILAHAAVGGFVTHC--GW-NSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKR 412 (480)
T ss_pred CCeEEeecCCHHH---HhcCcccCeEEeec--cc-chHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEecccccc
Confidence 4467779987665 56666754443432 32 48999999999999965432110 122 2235566552
Q ss_pred --C-CHHHHHHHHHHHHhC
Q 044542 409 --P-NVKSFVEALELVIRD 424 (465)
Q Consensus 409 --~-d~~~la~~i~~ll~~ 424 (465)
. +.++++++|.+++.+
T Consensus 413 ~~~~~~e~l~~av~~vm~~ 431 (480)
T PLN00164 413 DNFVEAAELERAVRSLMGG 431 (480)
T ss_pred CCcCcHHHHHHHHHHHhcC
Confidence 2 689999999999976
No 167
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.96 E-value=0.052 Score=52.16 Aligned_cols=95 Identities=8% Similarity=0.013 Sum_probs=64.1
Q ss_pred cEEEEEeeccccccCHH--HHHHHHHHhhhcCCCeEEEEEeCCcc--hhHHHHhc------CCeEEcCCCChhHHHHHHH
Q 044542 287 SLVMGVAGRLVRDKGHP--LLYEAFSSITRDHPGVYLLVAGTGPW--GRRYAELG------QNVKVLGALEAHQLSEFYN 356 (465)
Q Consensus 287 ~~~l~~~Grl~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~~~~l~------~~V~~~g~v~~~~~~~~~~ 356 (465)
+++++..|.-.+.|... .+.+.+..+.++ +.++++.|...+ .+..+++. ..+.+.|..+-.++..+++
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~--~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQAR--GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHC--CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 46776777766667644 677777777553 567888875322 22223322 2355788888899999999
Q ss_pred hcCeEEecccCCCCCcHHHHHHHHcCCeEEecC
Q 044542 357 ALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPN 389 (465)
Q Consensus 357 ~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~ 389 (465)
.||++|-. ++- .+-=|.|.|+|+|+-=
T Consensus 262 ~a~l~v~n----DSG--p~HlAaA~g~P~v~lf 288 (352)
T PRK10422 262 HAQLFIGV----DSA--PAHIAAAVNTPLICLF 288 (352)
T ss_pred hCCEEEec----CCH--HHHHHHHcCCCEEEEE
Confidence 99999973 222 4445789999999753
No 168
>PLN03004 UDP-glycosyltransferase
Probab=96.93 E-value=0.013 Score=57.77 Aligned_cols=80 Identities=13% Similarity=0.058 Sum_probs=58.0
Q ss_pred CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCC----cceeeeee-CCceEEeC----
Q 044542 338 QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPS----IVRTVVVN-EELGYTFS---- 408 (465)
Q Consensus 338 ~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg----~~~e~v~~-~~~G~l~~---- 408 (465)
.++.+.+|+|+.+ +++.+++..+-++. | -++++||+++|+|+|+-...+ .. ..+.+ -+.|+.++
T Consensus 334 ~g~~v~~W~PQ~~---iL~H~~v~~FvTH~--G-~nS~lEal~~GVP~v~~P~~~DQ~~na-~~~~~~~g~g~~l~~~~~ 406 (451)
T PLN03004 334 KGMVVKSWAPQVP---VLNHKAVGGFVTHC--G-WNSILEAVCAGVPMVAWPLYAEQRFNR-VMIVDEIKIAISMNESET 406 (451)
T ss_pred CcEEEEeeCCHHH---HhCCCccceEeccC--c-chHHHHHHHcCCCEEeccccccchhhH-HHHHHHhCceEEecCCcC
Confidence 6888999998776 67788885554532 2 359999999999999976432 11 22332 35676664
Q ss_pred -C-CHHHHHHHHHHHHhC
Q 044542 409 -P-NVKSFVEALELVIRD 424 (465)
Q Consensus 409 -~-d~~~la~~i~~ll~~ 424 (465)
. +.+++++++.+++.+
T Consensus 407 ~~~~~e~l~~av~~vm~~ 424 (451)
T PLN03004 407 GFVSSTEVEKRVQEIIGE 424 (451)
T ss_pred CccCHHHHHHHHHHHhcC
Confidence 3 789999999999987
No 169
>PLN02167 UDP-glycosyltransferase family protein
Probab=96.89 E-value=0.053 Score=54.23 Aligned_cols=156 Identities=14% Similarity=0.081 Sum_probs=85.7
Q ss_pred cEEEEEeecccc--ccCHHHHHHHHHHhhhcCCCeEEE-EEeCCcc---------h-hHHHHhcCCeEEcCCCChhHHHH
Q 044542 287 SLVMGVAGRLVR--DKGHPLLYEAFSSITRDHPGVYLL-VAGTGPW---------G-RRYAELGQNVKVLGALEAHQLSE 353 (465)
Q Consensus 287 ~~~l~~~Grl~~--~Kg~~~ll~a~~~l~~~~~~~~l~-ivG~g~~---------~-~~~~~l~~~V~~~g~v~~~~~~~ 353 (465)
+.+.+.+|.... .+.+..+.++++.. +..++ .++.... . ...++..+++.+.+++|+.+
T Consensus 281 svvyvsfGS~~~~~~~~~~ela~~l~~~-----~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~--- 352 (475)
T PLN02167 281 SVVFLCFGSLGSLPAPQIKEIAQALELV-----GCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVE--- 352 (475)
T ss_pred ceEEEeecccccCCHHHHHHHHHHHHhC-----CCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHH---
Confidence 356567787632 33355555555554 22343 3332110 1 11223335567789997665
Q ss_pred HHHhcC--eEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---e-eeeeCCceEEeC---------C-CHHHHHHH
Q 044542 354 FYNALD--VFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---T-VVVNEELGYTFS---------P-NVKSFVEA 417 (465)
Q Consensus 354 ~~~~aD--v~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e-~v~~~~~G~l~~---------~-d~~~la~~ 417 (465)
+++... +||. + -|+ ++++||+++|+|+|+-...+-.. . ++..-+.|+.+. . +.++++++
T Consensus 353 iL~h~~vg~fvt--H--~G~-nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~a 427 (475)
T PLN02167 353 ILAHKAIGGFVS--H--CGW-NSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGA 427 (475)
T ss_pred HhcCcccCeEEe--e--CCc-ccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHH
Confidence 565544 4554 2 232 48999999999999866432110 0 122334565542 3 78999999
Q ss_pred HHHHHhCC---hHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 044542 418 LELVIRDG---PKVLQRKGLACKEHALSMFTATKMASAYER 455 (465)
Q Consensus 418 i~~ll~~~---~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 455 (465)
+.+++.++ .+..+++++.+++.+.+.=|..+..+++.+
T Consensus 428 v~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~ 468 (475)
T PLN02167 428 VRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFID 468 (475)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999763 223345555666666554444444444443
No 170
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=96.87 E-value=0.064 Score=47.71 Aligned_cols=292 Identities=14% Similarity=0.103 Sum_probs=141.1
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcc-cCCcceEEEeecCCCccccC--CCCCCcEEEecCCchhH----
Q 044542 96 GGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDV-HQGNLHVHFAANDHGSVNLN--NDGAFDYVHTESVSLPH---- 168 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~--~~~~~DiI~~~~~~~~~---- 168 (465)
.|+.++..++-..+.+.||++.++..........+. ......+...... ...-. +-..+||++++++....
T Consensus 1 CGVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~dsH~~~~~si~k~~~~--e~de~v~~vN~yDI~m~nSvPa~~vqE~ 78 (355)
T PF11440_consen 1 CGVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPDSHDSKSFSIPKYLAK--EYDETVKKVNDYDIVMFNSVPATKVQEA 78 (355)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTTSSS-TTTEEEE-TTT--HHHHHHHHHTSSSEEEEEE--BTTS-HH
T ss_pred CCccccHHHHHHHHHhcCCeeEEEEecccccCCccccccceeeeehhhHH--HHHHHHHHhhccCEEEEecccCchHHHH
Confidence 378899999999999999999999887654333221 1122222211100 00000 23479999998763221
Q ss_pred ------HhhhcC--C-cEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhH
Q 044542 169 ------WRAKMV--P-NVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSA 239 (465)
Q Consensus 169 ------~~~~~~--p-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~ 239 (465)
-+..++ + ++|...|+........ .+ .....++.+|.|.+.|...
T Consensus 79 ~iNnY~kii~~Ik~~ik~V~~~Hdh~~lsI~r--------n~-------------------~le~~m~~~DvIfshs~~g 131 (355)
T PF11440_consen 79 IINNYEKIIKKIKPSIKVVGFMHDHNKLSIDR--------NP-------------------YLEGTMNEMDVIFSHSDNG 131 (355)
T ss_dssp HHHHHHHHHHCS-TTSEEEEEE---SHHHHTT--------BS-------------------SHHHHHHH-SEEEES-TTS
T ss_pred HHHHHHHHHHhccccceeEEEeeccceeeccc--------cc-------------------cHHHHHHhhcEEEeccccc
Confidence 111222 1 2578888864432211 11 1115567899999887542
Q ss_pred --HHH-HHHHhCCC---CCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEE---EEeeccccccCHHHHHHHHH
Q 044542 240 --AEV-LVKIYQLP---QRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVM---GVAGRLVRDKGHPLLYEAFS 310 (465)
Q Consensus 240 --~~~-~~~~~~~~---~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l---~~~Grl~~~Kg~~~ll~a~~ 310 (465)
... ..+.++-. .+++...|-... |++. .+-...|..+...... +.. .|+||..-.||...+++.-+
T Consensus 132 ~f~kv~m~~l~Ps~~~l~~~i~~~p~v~n---fqpp-~~i~~~Rstywkd~se-~nmnv~~yigR~Tt~kG~~~mfD~h~ 206 (355)
T PF11440_consen 132 WFSKVLMKELLPSKVSLFDRIKKFPMVFN---FQPP-MDINKYRSTYWKDVSE-KNMNVNRYIGRQTTWKGPRRMFDLHE 206 (355)
T ss_dssp HHHHTHHHHHS-SS--SSS-------EEE--------B-HHHHHHHH---GGG-SEEEEEEEE--SSGGG-HHHHHHHHH
T ss_pred hHHHHHHHhhccccCchhhhhhhcceeee---cCCc-ccHHHHHHHHhhhhHh-hhcccceeeeeeeeecCcHHHhhhHH
Confidence 222 22433211 123333333221 1121 1112344444422222 333 59999999999999999888
Q ss_pred HhhhcCCCeEEEEEeCCcchhH--HHH-----------------hc--CCeEEcCCCChhHHHHHHHhcCeEEeccc---
Q 044542 311 SITRDHPGVYLLVAGTGPWGRR--YAE-----------------LG--QNVKVLGALEAHQLSEFYNALDVFVNPTL--- 366 (465)
Q Consensus 311 ~l~~~~~~~~l~ivG~g~~~~~--~~~-----------------l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~--- 366 (465)
+..+. ++++-++-|-....+. +.+ +. ..+-++|..=.+|..+.++.+-....-+.
T Consensus 207 ~~lK~-~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~ 285 (355)
T PF11440_consen 207 KILKP-AGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQ 285 (355)
T ss_dssp HTTTT-TT-EEEEE---SSTHHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----G
T ss_pred HhcCC-cchhHHhhhhhcCCceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHH
Confidence 76665 7888888884221111 111 11 34777787767899999998877765321
Q ss_pred -C-CCCCcHHHHHHHHcCC-eEEecCCC--------CcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhC
Q 044542 367 -R-PQGLDLTLIEAMHCGR-TVLTPNYP--------SIVRTVVVNEELGYTFSP-NVKSFVEALELVIRD 424 (465)
Q Consensus 367 -~-~eg~~~~~~EAma~G~-PvI~s~~g--------g~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~ 424 (465)
+ .+.+-.+-+|..|||. ||.-...| |.+ ++......+.++. |.++-.+.|.++..+
T Consensus 286 ~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~--~~~~~~~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 286 KYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTR--YIDHPYSAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp GG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSB--GGSS--S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred HHHHhhhhhheeeeeeeceeeeeeccccccceeeecCce--eeccCcceeEeccchHHHHHHHHHHHhcc
Confidence 1 2346789999999998 66554332 222 2333444566666 888888888887665
No 171
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.0097 Score=60.86 Aligned_cols=124 Identities=19% Similarity=0.139 Sum_probs=91.8
Q ss_pred cEEEEEeeccccccCHHHHHHH----HHHhh-hcCCCeEEEEEeCCcc-----hhHHHHh---------cCCeEEcCCCC
Q 044542 287 SLVMGVAGRLVRDKGHPLLYEA----FSSIT-RDHPGVYLLVAGTGPW-----GRRYAEL---------GQNVKVLGALE 347 (465)
Q Consensus 287 ~~~l~~~Grl~~~Kg~~~ll~a----~~~l~-~~~~~~~l~ivG~g~~-----~~~~~~l---------~~~V~~~g~v~ 347 (465)
.+.++++-|+..+|...+.+.- ...++ +..|.+.+++.|.-.. ++.++.+ ..+|.|+...+
T Consensus 487 ~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYd 566 (750)
T COG0058 487 ALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYD 566 (750)
T ss_pred cceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCC
Confidence 3788899999999998866543 33344 3346687888886321 1112211 15689999887
Q ss_pred hhHHHHHHHhcCeEEecccC-CCCCcHHHHHHHHcCCeEEecCCCCcceeeee--eCCceEEeCCCH
Q 044542 348 AHQLSEFYNALDVFVNPTLR-PQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVV--NEELGYTFSPNV 411 (465)
Q Consensus 348 ~~~~~~~~~~aDv~v~ps~~-~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~--~~~~G~l~~~d~ 411 (465)
-.-...++.+|||-.+.|.. -|..|++-+-+|.-|.+.|+|--|... |+.+ ++++|++|-.+.
T Consensus 567 vslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanv-Ei~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 567 VSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANV-EIYEHVGGENGWIFGETV 632 (750)
T ss_pred hhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHH-HHHHhcCCCceEEeCCch
Confidence 66777788999999986642 388999999999999999999988887 7765 889999998633
No 172
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=96.72 E-value=0.021 Score=59.08 Aligned_cols=194 Identities=18% Similarity=0.231 Sum_probs=125.2
Q ss_pred CEEEecCCCCCCCccCCccc------CcccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCC----eEEE
Q 044542 253 NVHVILNGVDETKFVHDPEA------GVRFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPG----VYLL 322 (465)
Q Consensus 253 ki~vi~ngvd~~~~~~~~~~------~~~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~----~~l~ 322 (465)
.+..+|-|+|...+...... ..+++..+ .++.+++.+-++..-||...=+.|+.++.+++|+ +.++
T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~----~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvli 315 (732)
T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPF----KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLI 315 (732)
T ss_pred eeeecccccchHHhhccccchhHHHHHHHHhhhc----cCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEE
Confidence 45667778887776543221 12233322 2335555778899999999989999999888864 4444
Q ss_pred EEeCC---cch--hHHH--------Hh----c----CC-eEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHH
Q 044542 323 VAGTG---PWG--RRYA--------EL----G----QN-VKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMH 380 (465)
Q Consensus 323 ivG~g---~~~--~~~~--------~l----~----~~-V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma 380 (465)
.+..+ +.. +.++ +. + .. +.+...++..++.+++..+|+.+..+.+ +|..++.+|+.+
T Consensus 316 qi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~r-dGmnl~~~e~i~ 394 (732)
T KOG1050|consen 316 QIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWR-DGMNLVFLEYIL 394 (732)
T ss_pred EEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccc-cccchhhhHHHH
Confidence 44432 111 1111 11 1 23 3456778999999999999999999965 999999999998
Q ss_pred cC----CeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 044542 381 CG----RTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYER 455 (465)
Q Consensus 381 ~G----~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 455 (465)
|. .+.|.+..-|.. +.+. ....++.+ |.++++.+|..++..+.+.++..-......+.. ++....+.....
T Consensus 395 ~~~~~~~~lVlsef~G~~-~tl~--d~aivvnpw~~~~~~~~i~~al~~s~~e~~~r~~~~~~~v~~-~~~~~W~~~~~~ 470 (732)
T KOG1050|consen 395 CQENKKSVLVLSEFIGDD-TTLE--DAAIVVNPWDGDEFAILISKALTMSDEERELREPKHYKYVST-HDVVYWAKSFLQ 470 (732)
T ss_pred hhcccCCceEEeeecccc-cccc--ccCEEECCcchHHHHHHHHHHhhcCHHHHhhcchhhhhhhcc-hhHHHHHHHHHH
Confidence 85 567777776665 4433 34677788 999999999999998555444333333333222 344444443333
No 173
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=96.70 E-value=0.14 Score=47.88 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=83.5
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeeccc--cccC
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRLV--RDKG 301 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl~--~~Kg 301 (465)
..+++++.+.+-.+...+.+++ +|+ ++.+.+. +...-+.... ... ...+++.+.+.+.... ..+.
T Consensus 123 ~~l~~~~~i~vRD~~S~~~l~~-~g~---~i~~~~D---~a~~l~~~~~----~~~--~~~~~~~i~i~~r~~~~~~~~~ 189 (298)
T TIGR03609 123 RVLRGCRAISVRDAASYRLLKR-LGI---PAELAAD---PVWLLPPEPW----PGG--EPLPEPVIVVSLRPWPLLDVSR 189 (298)
T ss_pred HHHccCCEEEEeCHHHHHHHHH-hCC---CceEeCC---hhhhCCCCcc----ccc--ccCCCCeEEEEECCCCcCCHHH
Confidence 5678999998888888888766 675 4555543 3222111110 000 0112223333332211 1223
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEEeC--CcchhHHHHhc----CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHH
Q 044542 302 HPLLYEAFSSITRDHPGVYLLVAGT--GPWGRRYAELG----QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTL 375 (465)
Q Consensus 302 ~~~ll~a~~~l~~~~~~~~l~ivG~--g~~~~~~~~l~----~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~ 375 (465)
.+.+.+++..+.++. +.+++++.. ..+.+..+++. +...++...+.+++..+++.+|++|-...+ .+
T Consensus 190 ~~~l~~~l~~l~~~~-g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH------~~ 262 (298)
T TIGR03609 190 LLRLLRALDRLQRDT-GAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLH------AL 262 (298)
T ss_pred HHHHHHHHHHHHHhh-CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechH------HH
Confidence 456777777776552 444544442 22333333332 222333556778999999999999987766 77
Q ss_pred HHHHHcCCeEEecC
Q 044542 376 IEAMHCGRTVLTPN 389 (465)
Q Consensus 376 ~EAma~G~PvI~s~ 389 (465)
+=|+.+|+|+|+-.
T Consensus 263 I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 263 ILAAAAGVPFVALS 276 (298)
T ss_pred HHHHHcCCCEEEee
Confidence 88999999999754
No 174
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=96.60 E-value=0.64 Score=43.49 Aligned_cols=306 Identities=13% Similarity=0.074 Sum_probs=170.0
Q ss_pred CCChHHHHHHHHHHHHHhCC--cEEEEEeCCCCCCCCCcccCCcceEEEeecCCCccccCCCCCCcEEEecCCch-----
Q 044542 94 APGGMERHASTLYHALAARG--HEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSVNLNNDGAFDYVHTESVSL----- 166 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~DiI~~~~~~~----- 166 (465)
...|+...+.-|+..|++.. ++|.++...+..............+....... -..+.||++--+..+
T Consensus 16 W~NGi~QN~~fL~~lL~qs~~v~~V~Lvn~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~lDVlIEmg~ql~~~~~ 89 (364)
T PF10933_consen 16 WENGINQNCIFLAMLLQQSPRVESVVLVNGGDGNPIPAALMLDLLDVPLVDFDD------AIDELDVLIEMGAQLDPEWL 89 (364)
T ss_pred hhhchhhHHHHHHHHHhhCCCcceEEEEECCCCCcCCcccccccCCCceecHHH------hcccCCEEEEccCccCHHHH
Confidence 45788888999999999875 79999987654333222211111122111110 134789998766432
Q ss_pred hHHhhhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhH---HHHH
Q 044542 167 PHWRAKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSA---AEVL 243 (465)
Q Consensus 167 ~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~---~~~~ 243 (465)
....+++.+ +|....|..+......... .++. . .+ ..-..+|.|.++-+.. ..++
T Consensus 90 ~~~~~~G~K-vV~y~~GndYv~~~E~~lF---~k~~--~------------~~----f~~~~yD~VW~lPq~~~~~~~yl 147 (364)
T PF10933_consen 90 DYMRARGGK-VVSYRCGNDYVMDIESMLF---NKPS--G------------HL----FNGAPYDEVWTLPQFENTCAPYL 147 (364)
T ss_pred HHHHHcCCe-EEEEeCCchHHHHhhHHhc---CCCC--C------------cc----CCCCCCceeEeccchhhhchHHH
Confidence 222334444 8888888765533222111 1110 0 00 1124567777655432 3345
Q ss_pred HHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCC-CCcEEEE-EeeccccccCHH---HHHHHHHHhhhcCCC
Q 044542 244 VKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPA-NVSLVMG-VAGRLVRDKGHP---LLYEAFSSITRDHPG 318 (465)
Q Consensus 244 ~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~-~~~~~l~-~~Grl~~~Kg~~---~ll~a~~~l~~~~~~ 318 (465)
+..+ ...++++|.--++-+++......++-..++|-.+ .....+. |=-++.--|.-- ++.|++-+- .|+
T Consensus 148 ~~l~---r~Pv~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~~PmLi~E~aYR~---~P~ 221 (364)
T PF10933_consen 148 ETLH---RCPVRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVVKTCFIPMLICEEAYRA---DPD 221 (364)
T ss_pred HHHh---cCCceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEEeecCccHHHHHHHHHh---Chh
Confidence 4433 3667888887666554432221111112233322 1113332 223344445432 233433332 243
Q ss_pred -eEEEEEeC-Ccchh------HHHHhc----CCeEEcCCCChhHHHHHHHh-cCeEEecccCCCCCcHHHHHHHHcCCeE
Q 044542 319 -VYLLVAGT-GPWGR------RYAELG----QNVKVLGALEAHQLSEFYNA-LDVFVNPTLRPQGLDLTLIEAMHCGRTV 385 (465)
Q Consensus 319 -~~l~ivG~-g~~~~------~~~~l~----~~V~~~g~v~~~~~~~~~~~-aDv~v~ps~~~eg~~~~~~EAma~G~Pv 385 (465)
+..+.+-. -..++ .+..+. ....|.|.. +++.+++. .|++|.-- |.-+....-.||+.-|=|.
T Consensus 222 ~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~---~~p~fla~~tD~VvSHq-WeN~lNYlY~daLyggYPL 297 (364)
T PF10933_consen 222 AVEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF---DFPDFLAQHTDAVVSHQ-WENPLNYLYYDALYGGYPL 297 (364)
T ss_pred hcceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec---ChHHHHHhCCCEEEecc-ccchhhHHHHHHHhcCCCc
Confidence 34444443 21111 122222 677888886 66776654 79888643 5456677889999999999
Q ss_pred EecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCH
Q 044542 386 LTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTA 446 (465)
Q Consensus 386 I~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~ 446 (465)
|-.. ..+. +.|+..+. |..+=++++.+++.+-...++...+++++.+.. ++.
T Consensus 298 VHNS------~~l~--d~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~-~~p 350 (364)
T PF10933_consen 298 VHNS------PLLK--DVGYYYPDFDAFEGARQLLRAIREHDADLDAYRARARRLLDR-LSP 350 (364)
T ss_pred ccCc------chhc--ccCcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-hCC
Confidence 9743 2333 38999999 999999999999887566778888888888766 443
No 175
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=95.91 E-value=0.067 Score=48.46 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=61.5
Q ss_pred CCcEEEEEeeccccccCHH--HHHHHHHHhhhcCCCeEEEEEeCCcc--hhHHHHhc-----CCeEEcCCCChhHHHHHH
Q 044542 285 NVSLVMGVAGRLVRDKGHP--LLYEAFSSITRDHPGVYLLVAGTGPW--GRRYAELG-----QNVKVLGALEAHQLSEFY 355 (465)
Q Consensus 285 ~~~~~l~~~Grl~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~~~~l~-----~~V~~~g~v~~~~~~~~~ 355 (465)
+++++++..|.-.+.|... .+.+.+..+.+++ ..+++.|.+.+ ++..+.+. ..+.+.|..+-.++..++
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali 181 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALI 181 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHH
Confidence 4457777888766777754 4777788887654 77888887665 33333433 268888988889999999
Q ss_pred HhcCeEEecccCCCCCcHHHHHHHHcCCeEEec
Q 044542 356 NALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTP 388 (465)
Q Consensus 356 ~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s 388 (465)
+.||++|.+- +. .+-=|.|.|+|+|+-
T Consensus 182 ~~a~~~I~~D----tg--~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 182 SRADLVIGND----TG--PMHLAAALGTPTVAL 208 (247)
T ss_dssp HTSSEEEEES----SH--HHHHHHHTT--EEEE
T ss_pred hcCCEEEecC----Ch--HHHHHHHHhCCEEEE
Confidence 9999999742 22 455589999999985
No 176
>PRK14986 glycogen phosphorylase; Provisional
Probab=95.90 E-value=0.045 Score=56.91 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=95.7
Q ss_pred EEEEEeeccccccCHHH-HHHH---HHHhhhcC----CCeEEEEEeCCcc-----hhHHHH---hc----------C--C
Q 044542 288 LVMGVAGRLVRDKGHPL-LYEA---FSSITRDH----PGVYLLVAGTGPW-----GRRYAE---LG----------Q--N 339 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~-ll~a---~~~l~~~~----~~~~l~ivG~g~~-----~~~~~~---l~----------~--~ 339 (465)
+..+++-|+..+|+..+ ++.. +.++++.- .+..+++.|.... ++.++. ++ + +
T Consensus 544 Lfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~~lk 623 (815)
T PRK14986 544 LFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLK 623 (815)
T ss_pred ceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcCcee
Confidence 77778999999999988 5555 44454431 2478999986311 111221 11 3 7
Q ss_pred eEEcCCCChhHHHHHHHhcCeEEecccC-CCCCcHHHHHHHHcCCeEEecCCCCcceeeeee--CCceEEeCCCHHHHHH
Q 044542 340 VKVLGALEAHQLSEFYNALDVFVNPTLR-PQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVN--EELGYTFSPNVKSFVE 416 (465)
Q Consensus 340 V~~~g~v~~~~~~~~~~~aDv~v~ps~~-~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~--~~~G~l~~~d~~~la~ 416 (465)
|.|+...+-.-...++.++|+-...|.. .|..|++-+-+|.-|.+.+++--|... |+..+ +++|+.+-.+.+++.+
T Consensus 624 VVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nv-Ei~e~vG~eN~~~fG~~~~ev~~ 702 (815)
T PRK14986 624 VVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANV-EMLEHVGEENIFIFGNTAEEVEA 702 (815)
T ss_pred EEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchh-HHHHhcCCCcEEEeCCCHHHHHH
Confidence 9999988777788889999999986652 488999999999999999999988887 77665 7899999876666654
Q ss_pred H
Q 044542 417 A 417 (465)
Q Consensus 417 ~ 417 (465)
.
T Consensus 703 ~ 703 (815)
T PRK14986 703 L 703 (815)
T ss_pred H
Confidence 3
No 177
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.87 E-value=0.27 Score=46.52 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=63.9
Q ss_pred cEEEEEeeccccccCHH--HHHHHHHHhhhcCCCeEEEEE-eCCcchhHHHHhc---CCeEEcCCCChhHHHHHHHhcCe
Q 044542 287 SLVMGVAGRLVRDKGHP--LLYEAFSSITRDHPGVYLLVA-GTGPWGRRYAELG---QNVKVLGALEAHQLSEFYNALDV 360 (465)
Q Consensus 287 ~~~l~~~Grl~~~Kg~~--~ll~a~~~l~~~~~~~~l~iv-G~g~~~~~~~~l~---~~V~~~g~v~~~~~~~~~~~aDv 360 (465)
+++++..|.-...|... .+.+.+..+.++ +.++++. |...+.+..+++. .++.+.|..+-.++..+++.||+
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~--~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l 256 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPS--GLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKA 256 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCE
Confidence 46554555444455544 677777777653 4567775 6444444444443 45778898888999999999999
Q ss_pred EEecccCCCCCcHHHHHHHHcCCeEEecC
Q 044542 361 FVNPTLRPQGLDLTLIEAMHCGRTVLTPN 389 (465)
Q Consensus 361 ~v~ps~~~eg~~~~~~EAma~G~PvI~s~ 389 (465)
+|-.- .| .+-=|.|+|+|+|+-=
T Consensus 257 ~I~nD---SG---p~HlA~A~g~p~valf 279 (322)
T PRK10964 257 VVSVD---TG---LSHLTAALDRPNITLY 279 (322)
T ss_pred EEecC---Cc---HHHHHHHhCCCEEEEE
Confidence 99742 22 4555899999999853
No 178
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=95.84 E-value=0.45 Score=48.99 Aligned_cols=188 Identities=17% Similarity=0.204 Sum_probs=111.5
Q ss_pred hcccCEEEEeChhHHHHHHH-----HhCCCCCCEEEecCCCCCCCccCCccc----------------------------
Q 044542 226 FSSYNQHICISNSAAEVLVK-----IYQLPQRNVHVILNGVDETKFVHDPEA---------------------------- 272 (465)
Q Consensus 226 ~~~~d~ii~~S~~~~~~~~~-----~~~~~~~ki~vi~ngvd~~~~~~~~~~---------------------------- 272 (465)
+..+..+-.||.--.+.+++ .+.+.++++.-+-|||....+-.....
T Consensus 329 l~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~ 408 (713)
T PF00343_consen 329 LRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFA 408 (713)
T ss_dssp HHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGC
T ss_pred HHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhh
Confidence 45556777888776665543 455667899999999988776432100
Q ss_pred -C-------------------cccccccC--CCCCCcEEEEEeeccccccCHHH-HH---HHHHHhhhc----CCCeEEE
Q 044542 273 -G-------------------VRFPEKLG--VPANVSLVMGVAGRLVRDKGHPL-LY---EAFSSITRD----HPGVYLL 322 (465)
Q Consensus 273 -~-------------------~~~r~~~g--~~~~~~~~l~~~Grl~~~Kg~~~-ll---~a~~~l~~~----~~~~~l~ 322 (465)
. ..++++.| +.++. +..+++-|+..+|...+ ++ +-+.++++. ...+.++
T Consensus 409 dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~s-lfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~I 487 (713)
T PF00343_consen 409 DDEEFQEELREVKQENKERLAEYIKKRTGVELDPDS-LFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFI 487 (713)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTS-EEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcch-hhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEE
Confidence 0 00111223 23343 77789999999999887 33 445555543 1357899
Q ss_pred EEeCCcc-----hhHHHH---h----------cC--CeEEcCCCChhHHHHHHHhcCeEEecccC-CCCCcHHHHHHHHc
Q 044542 323 VAGTGPW-----GRRYAE---L----------GQ--NVKVLGALEAHQLSEFYNALDVFVNPTLR-PQGLDLTLIEAMHC 381 (465)
Q Consensus 323 ivG~g~~-----~~~~~~---l----------~~--~V~~~g~v~~~~~~~~~~~aDv~v~ps~~-~eg~~~~~~EAma~ 381 (465)
+.|.-.. ++.++. + .+ +|.|+...+-.-...++.++||-+..+.. .|..|++-+-+|.-
T Consensus 488 FaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~N 567 (713)
T PF00343_consen 488 FAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMN 567 (713)
T ss_dssp EE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHT
T ss_pred EeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcC
Confidence 9996311 122221 1 12 68999998877788889999999996653 48999999999999
Q ss_pred CCeEEecCCCCcceeeeee--CCceEEeCCCHHHHH
Q 044542 382 GRTVLTPNYPSIVRTVVVN--EELGYTFSPNVKSFV 415 (465)
Q Consensus 382 G~PvI~s~~gg~~~e~v~~--~~~G~l~~~d~~~la 415 (465)
|.+.+++--|... |+..+ .++.++|-.+.+++.
T Consensus 568 GaL~lstlDG~ni-Ei~e~vG~eN~fiFG~~~~ev~ 602 (713)
T PF00343_consen 568 GALNLSTLDGWNI-EIAEAVGEENIFIFGLTAEEVE 602 (713)
T ss_dssp T-EEEEESSTCHH-HHHHHH-GGGSEEES-BHHHHH
T ss_pred CCeEEecccchhH-HHHHhcCCCcEEEcCCCHHHHH
Confidence 9999999888877 66532 567888865555543
No 179
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=95.74 E-value=0.39 Score=47.90 Aligned_cols=97 Identities=6% Similarity=-0.095 Sum_probs=62.1
Q ss_pred CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eee-eeCCceEEeC----C
Q 044542 338 QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVV-VNEELGYTFS----P 409 (465)
Q Consensus 338 ~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v-~~~~~G~l~~----~ 409 (465)
.++++.+++|+.+ ++....+..+-+. |--++++||+.+|+|+|+-...+-.. ..+ ..-+.|+.++ .
T Consensus 338 rg~vv~~W~PQ~~---iL~h~~vg~FitH---~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~ 411 (481)
T PLN02992 338 RGFVVPSWAPQAE---ILAHQAVGGFLTH---CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEV 411 (481)
T ss_pred CCEEEeecCCHHH---HhCCcccCeeEec---CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCc
Confidence 5688899998766 4556666333332 22359999999999999976543210 123 2345566652 3
Q ss_pred -CHHHHHHHHHHHHhCC-----hHHHHHHHHHHHHHH
Q 044542 410 -NVKSFVEALELVIRDG-----PKVLQRKGLACKEHA 440 (465)
Q Consensus 410 -d~~~la~~i~~ll~~~-----~~~~~~~~~~~~~~~ 440 (465)
+.+++.+++.+++.++ .+..+++++.+++.+
T Consensus 412 ~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av 448 (481)
T PLN02992 412 ISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSL 448 (481)
T ss_pred ccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 7899999999999762 123344555566555
No 180
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.74 E-value=0.17 Score=47.85 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=78.0
Q ss_pred CCcEEEEEeeccccccCH--HHHHHHHHHhhhcCCCeEEEEEeCCc-chhHHHHhc---CCeEEcCCCChhHHHHHHHhc
Q 044542 285 NVSLVMGVAGRLVRDKGH--PLLYEAFSSITRDHPGVYLLVAGTGP-WGRRYAELG---QNVKVLGALEAHQLSEFYNAL 358 (465)
Q Consensus 285 ~~~~~l~~~Grl~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~-~~~~~~~l~---~~V~~~g~v~~~~~~~~~~~a 358 (465)
+++++++..|.-.+.|.. +.+.+.+..+.++ +..+++.|.++ +.+..+++. ++..+.|..+-.++..+++.|
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a 255 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGA 255 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcC
Confidence 345777777765566765 4677777777653 56777774443 333333332 445678988889999999999
Q ss_pred CeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---------eeeeeCCceEEeCC-CHHHHHHHHHHH
Q 044542 359 DVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---------TVVVNEELGYTFSP-NVKSFVEALELV 421 (465)
Q Consensus 359 Dv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---------e~v~~~~~G~l~~~-d~~~la~~i~~l 421 (465)
|++|.+ ++- .+==|.|.|+|+|+-=.+..+. .++. +. ..+. ++++..+++.++
T Consensus 256 ~l~I~~----DSg--p~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~-~~---~~~~I~~~~V~~ai~~~ 318 (319)
T TIGR02193 256 DAVVGV----DTG--LTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALL-GE---SGANPTPDEVLAALEEL 318 (319)
T ss_pred CEEEeC----CCh--HHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEc-cC---ccCCCCHHHHHHHHHhh
Confidence 999974 332 4444778999999743222211 1111 11 1333 788888877765
No 181
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=95.64 E-value=0.12 Score=51.19 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=99.6
Q ss_pred eecc-ccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCC
Q 044542 293 AGRL-VRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGL 371 (465)
Q Consensus 293 ~Grl-~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~ 371 (465)
.|.- .-+||-+..++++.+. -+++-.|.+... ....+..-|.-+|.++.+++..+++.+.|+|--..-.|
T Consensus 283 yGK~~~~w~~k~~~l~~l~~~----~eih~tV~~~~~---~~~~~P~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~E-- 353 (559)
T PF15024_consen 283 YGKERYMWKGKEKYLDVLHKY----MEIHGTVYDEPQ---RPPNVPSFVKNHGILSGDEFQQLLRKAKVFIGLGFPYE-- 353 (559)
T ss_pred EccchhhhcCcHHHHHHHHhh----cEEEEEeccCCC---CCcccchhhhhcCcCCHHHHHHHHHhhhEeeecCCCCC--
Confidence 3544 3477888888877654 356666655432 11223355777999999999999999999996332113
Q ss_pred cHHHHHHHHcCCeEEecCCCCcce--------------ee---------eeeCCceEEeCC-CHHHHHHHHHHHHhCChH
Q 044542 372 DLTLIEAMHCGRTVLTPNYPSIVR--------------TV---------VVNEELGYTFSP-NVKSFVEALELVIRDGPK 427 (465)
Q Consensus 372 ~~~~~EAma~G~PvI~s~~gg~~~--------------e~---------v~~~~~G~l~~~-d~~~la~~i~~ll~~~~~ 427 (465)
|-+.+||+|.|+|.|-........ ++ ....-.-+.++. |.+++.+||.+++.++.
T Consensus 354 gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~v- 432 (559)
T PF15024_consen 354 GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVKAILATPV- 432 (559)
T ss_pred CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcCC-
Confidence 348999999999988755321110 11 111234567777 99999999999999832
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 044542 428 VLQRKGLACKEHALSMFTATKMASAYERFFLR 459 (465)
Q Consensus 428 ~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 459 (465)
.-++--.|+.+.|.+++..+++.
T Consensus 433 ---------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 433 ---------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred ---------CCcCCcccCHHHHHHHHHHHHHh
Confidence 23445568999999999877764
No 182
>PLN03015 UDP-glucosyl transferase
Probab=95.61 E-value=2.3 Score=42.35 Aligned_cols=109 Identities=6% Similarity=-0.040 Sum_probs=62.5
Q ss_pred eEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eee-eeCCceEEeC------C
Q 044542 340 VKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVV-VNEELGYTFS------P 409 (465)
Q Consensus 340 V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v-~~~~~G~l~~------~ 409 (465)
+.+.+|+|+.++.. ...+..+-++. | -++++||+.+|+|+|+-..-+-.. ..+ ..-+.|+-+. .
T Consensus 337 l~v~~W~PQ~~vL~---h~~vg~fvtH~--G-wnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~ 410 (470)
T PLN03015 337 LVVTQWAPQVEILS---HRSIGGFLSHC--G-WSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKV 410 (470)
T ss_pred eEEEecCCHHHHhc---cCccCeEEecC--C-chhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCc
Confidence 66779998777544 44453333322 2 258999999999999976532110 111 2224454442 2
Q ss_pred -CHHHHHHHHHHHHhC----C---hHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 044542 410 -NVKSFVEALELVIRD----G---PKVLQRKGLACKEHALSMFTATKMASAYE 454 (465)
Q Consensus 410 -d~~~la~~i~~ll~~----~---~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 454 (465)
+.+++.+++++++.. . ++..+++++.+++.+.+.=|..+..+++.
T Consensus 411 v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~ 463 (470)
T PLN03015 411 IGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWA 463 (470)
T ss_pred cCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 789999999999952 1 12333455555555554434444344433
No 183
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.58 E-value=1.7 Score=39.35 Aligned_cols=117 Identities=13% Similarity=0.062 Sum_probs=64.5
Q ss_pred EEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhc---C-CeEEcCCCChhHHHHHHHhcCeEEec
Q 044542 289 VMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELG---Q-NVKVLGALEAHQLSEFYNALDVFVNP 364 (465)
Q Consensus 289 ~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~---~-~V~~~g~v~~~~~~~~~~~aDv~v~p 364 (465)
+|+..|+ |.+..+... .. ...+...+.-....-+...+++ + -+-+.|..+.+.=..+++...+-++-
T Consensus 132 i~lttG~----k~l~~f~~~----~~-~~~~~~RvLP~~~~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lV 202 (256)
T TIGR00715 132 VFLTAGA----SWLSHFSLS----QD-EAVVFVRVLPYPQALAQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVV 202 (256)
T ss_pred EEEecCc----chHHHHhhc----cC-CceEEEEECCCchhhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEE
Confidence 4556664 555554331 11 1234444442222223344443 3 34556777766666777765543332
Q ss_pred ccCC---CCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHH
Q 044542 365 TLRP---QGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVI 422 (465)
Q Consensus 365 s~~~---eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll 422 (465)
+..+ .|+.-++--|+.+|+|||.-+.+.... .+-.+. +.+++.+.+.+++
T Consensus 203 tK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~-------~~~~~~-~~~el~~~l~~~~ 255 (256)
T TIGR00715 203 TKASGEQGGELEKVKAAEALGINVIRIARPQTIP-------GVAIFD-DISQLNQFVARLL 255 (256)
T ss_pred EcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCC-------CCccCC-CHHHHHHHHHHhc
Confidence 3221 256678988999999999988775431 112233 7788877776653
No 184
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=95.57 E-value=0.24 Score=40.87 Aligned_cols=129 Identities=18% Similarity=0.263 Sum_probs=69.2
Q ss_pred eeEEEEeCCCCCCCCCChHHH-HHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCccccCCCCCCcE
Q 044542 80 LKLAVFSKTWPIGAAPGGMER-HASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSVNLNNDGAFDY 158 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~-~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~Di 158 (465)
|||+++.+.+ ||..+ .+..+++.+ .|+++++|......... ..+..+.+.. .......+|+
T Consensus 1 M~ILlle~y~------ggSHk~~~~~L~~~~---~~~~~lltLP~r~w~WR---mRg~AL~~a~------~~~~~~~~dl 62 (168)
T PF12038_consen 1 MRILLLEPYY------GGSHKQWADGLAAHS---EHEWTLLTLPARKWHWR---MRGAALYFAQ------QIPLSHSYDL 62 (168)
T ss_pred CeEEEEcccc------ccCHHHHHHHHHHhc---cCCEEEEEcCCCccccc---cCCCHHHHhh------ccccccCCCE
Confidence 8999999865 55544 344444444 48889998765332211 0000011110 0114566899
Q ss_pred EEecCC-chhHHhh-----hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEE
Q 044542 159 VHTESV-SLPHWRA-----KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQH 232 (465)
Q Consensus 159 I~~~~~-~~~~~~~-----~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 232 (465)
|++.+. .+...++ .++| .++.+|+....+ |......+.....+..+ ...-.||.|
T Consensus 63 l~aTsmldLa~l~gL~p~l~~~p-~ilYFHENQl~Y--------------P~~~~~~rd~~~~~~ni----~saLaAD~v 123 (168)
T PF12038_consen 63 LFATSMLDLATLRGLRPDLANVP-KILYFHENQLAY--------------PVSPGQERDFQYGMNNI----YSALAADRV 123 (168)
T ss_pred EEeeccccHHHHHhhccCCCCCC-EEEEEecCcccC--------------CCCCCccccccHHHHHH----HHHHhceee
Confidence 999875 2332222 2456 899999753321 22222222222222222 234568999
Q ss_pred EEeChhHHHHHHH
Q 044542 233 ICISNSAAEVLVK 245 (465)
Q Consensus 233 i~~S~~~~~~~~~ 245 (465)
+..|.+-++.+.+
T Consensus 124 ~FNS~~nr~sFL~ 136 (168)
T PF12038_consen 124 VFNSAFNRDSFLD 136 (168)
T ss_pred eecchhhHHHHHH
Confidence 9999998886655
No 185
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.41 E-value=0.1 Score=48.33 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=66.1
Q ss_pred EEEEEeeccccccC--HHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhc------CCeEEcCCCChhHHHHHHHhcC
Q 044542 288 LVMGVAGRLVRDKG--HPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELG------QNVKVLGALEAHQLSEFYNALD 359 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg--~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~------~~V~~~g~v~~~~~~~~~~~aD 359 (465)
++++..|.-.+.|. .+.+.++++.+.++ +.+++++|...+.+..+++. ..+.+.|..+-.|+..+++.||
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLAR--GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHC--CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 55556666555554 45778888888765 67888999766555444332 3355678777899999999999
Q ss_pred eEEecccCCCCCcHHHHHHHHcCCeEEecCC
Q 044542 360 VFVNPTLRPQGLDLTLIEAMHCGRTVLTPNY 390 (465)
Q Consensus 360 v~v~ps~~~eg~~~~~~EAma~G~PvI~s~~ 390 (465)
++|.+- + | .+--|.+.|+|+|+--.
T Consensus 201 l~I~~D----s-g-~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 201 LVVTND----S-G-PMHLAAALGTPTVALFG 225 (279)
T ss_pred EEEeeC----C-H-HHHHHHHcCCCEEEEEC
Confidence 999742 2 2 44446799999997543
No 186
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.23 E-value=0.1 Score=54.39 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=94.6
Q ss_pred EEEEEeeccccccCHHH-HHHH---HHHhhhcC----CCeEEEEEeCCcc-----hhHHHH---hc----------C--C
Q 044542 288 LVMGVAGRLVRDKGHPL-LYEA---FSSITRDH----PGVYLLVAGTGPW-----GRRYAE---LG----------Q--N 339 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~-ll~a---~~~l~~~~----~~~~l~ivG~g~~-----~~~~~~---l~----------~--~ 339 (465)
+..+++-|+..+|+..+ ++.. +.++++.- .+..+++.|.... ++.++. ++ + +
T Consensus 531 lfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lk 610 (797)
T cd04300 531 LFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGDKLK 610 (797)
T ss_pred cEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCCceE
Confidence 77779999999999988 5544 45554431 2377888886311 111111 11 2 6
Q ss_pred eEEcCCCChhHHHHHHHhcCeEEecccC-CCCCcHHHHHHHHcCCeEEecCCCCcceeeeee--CCceEEeCCCHHHHHH
Q 044542 340 VKVLGALEAHQLSEFYNALDVFVNPTLR-PQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVN--EELGYTFSPNVKSFVE 416 (465)
Q Consensus 340 V~~~g~v~~~~~~~~~~~aDv~v~ps~~-~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~--~~~G~l~~~d~~~la~ 416 (465)
|.|+....-.-...++.+|||-..-|.. .|..|+.-+-+|.-|.+.++|--|... |+.++ ++++++|-.+.++..+
T Consensus 611 VVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanv-Ei~e~vG~eN~fiFG~~~~ev~~ 689 (797)
T cd04300 611 VVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANV-EIAEEVGEENIFIFGLTAEEVEA 689 (797)
T ss_pred EEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhH-HHHHHhCcCcEEEeCCCHHHHHH
Confidence 9999988777788899999999986652 488899999999999999999888887 77665 7899999876666654
No 187
>PLN02534 UDP-glycosyltransferase
Probab=95.13 E-value=1.3 Score=44.42 Aligned_cols=114 Identities=12% Similarity=-0.016 Sum_probs=65.8
Q ss_pred CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---e-eeeeCCceEEe------
Q 044542 338 QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---T-VVVNEELGYTF------ 407 (465)
Q Consensus 338 ~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e-~v~~~~~G~l~------ 407 (465)
.++.+.|++|+.+ ++...++..+-+. |-.++++||+++|+|+|+-...+-.. . ++..-+.|+-+
T Consensus 344 ~g~~v~~w~pq~~---iL~h~~v~~fvtH---~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~ 417 (491)
T PLN02534 344 RGLLIKGWAPQVL---ILSHPAIGGFLTH---CGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPV 417 (491)
T ss_pred CCeeccCCCCHHH---HhcCCccceEEec---CccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccc
Confidence 6788889998754 6667777444342 23469999999999999976532110 0 11111122211
Q ss_pred --------C-C-CHHHHHHHHHHHHhC----Ch---HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 044542 408 --------S-P-NVKSFVEALELVIRD----GP---KVLQRKGLACKEHALSMFTATKMASAYERFF 457 (465)
Q Consensus 408 --------~-~-d~~~la~~i~~ll~~----~~---~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 457 (465)
. . +.+++++++.+++.+ .. +...++++.+++.+.+.=|..+..+++.+-+
T Consensus 418 ~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i 484 (491)
T PLN02534 418 RWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDV 484 (491)
T ss_pred cccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 0 1 688999999999962 11 1233444555555555444444445444443
No 188
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.97 E-value=0.32 Score=44.67 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHhhhcCCCeEEEEEeCC-----cchhHHHHhc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcH
Q 044542 301 GHPLLYEAFSSITRDHPGVYLLVAGTG-----PWGRRYAELG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDL 373 (465)
Q Consensus 301 g~~~ll~a~~~l~~~~~~~~l~ivG~g-----~~~~~~~~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~ 373 (465)
....+++.+..+.+..|+.+++|==.. .....+.++. .++.+... .-.+.+++..||.++.-+ +.
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ll~~s~~Vvtin------St 209 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDD--DVNLYELLEQSDAVVTIN------ST 209 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECC--CCCHHHHHHhCCEEEEEC------CH
Confidence 455667777777777788887765432 1223344432 44444322 247889999999999743 34
Q ss_pred HHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC
Q 044542 374 TLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP 409 (465)
Q Consensus 374 ~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~ 409 (465)
+-+||+.+|+||++...+-. ...|+..+.
T Consensus 210 vGlEAll~gkpVi~~G~~~Y-------~~~glt~~~ 238 (269)
T PF05159_consen 210 VGLEALLHGKPVIVFGRAFY-------AGWGLTDDR 238 (269)
T ss_pred HHHHHHHcCCceEEecCccc-------CCCCccCcC
Confidence 88999999999999644322 135666655
No 189
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.91 E-value=0.097 Score=45.24 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=31.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN 129 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~ 129 (465)
||||+.... .. ...-++.|+++|++.||+|.|+++........
T Consensus 1 M~ILlTNDD-----Gi--~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g 43 (196)
T PF01975_consen 1 MRILLTNDD-----GI--DAPGIRALAKALSALGHDVVVVAPDSEQSGTG 43 (196)
T ss_dssp SEEEEE-SS------T--TSHHHHHHHHHHTTTSSEEEEEEESSSTTTST
T ss_pred CeEEEEcCC-----CC--CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcc
Confidence 899998874 11 23347889999988899999999987655443
No 190
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=94.62 E-value=1.5 Score=42.52 Aligned_cols=188 Identities=11% Similarity=0.123 Sum_probs=106.3
Q ss_pred hcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcc--cccccCCCCCCcEEEEEeecccccc---
Q 044542 226 FSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVR--FPEKLGVPANVSLVMGVAGRLVRDK--- 300 (465)
Q Consensus 226 ~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~--~r~~~g~~~~~~~~l~~~Grl~~~K--- 300 (465)
..+.|...+.+......+.+-+++..+++.....+-....+......... .+..++++.+. .+++|.-.+.+..
T Consensus 146 ~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k-~vIlyaPTfr~~~~~~ 224 (388)
T COG1887 146 RNHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDK-KVILYAPTFRDNDVLI 224 (388)
T ss_pred eeeeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHHHhhhcCCcccC-ceEEecCCccCCcccc
Confidence 45667888888888887788788877777666555443333332221111 34455566665 5565877766654
Q ss_pred C---HHHH--HHHHHHhhhcCCCeEEEEEeCCcchhHHH---HhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCc
Q 044542 301 G---HPLL--YEAFSSITRDHPGVYLLVAGTGPWGRRYA---ELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLD 372 (465)
Q Consensus 301 g---~~~l--l~a~~~l~~~~~~~~l~ivG~g~~~~~~~---~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~ 372 (465)
| .... ++++.+...+ .+..+++-=.....+... +..+.+..+-. ..++.++|..+|++|. .++
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~-~~~~ii~k~Hp~is~~~~~~~~~~~~~~~vs~--~~di~dll~~sDiLIT------DyS 295 (388)
T COG1887 225 GTQFFNLDIDIEKLKEKLGE-NEYVIIVKPHPLISDKIDKRYALDDFVLDVSD--NADINDLLLVSDILIT------DYS 295 (388)
T ss_pred chhhhhhhhhHHHHHHhhcc-CCeEEEEecChhhhhhhhhhhhccceeEeccc--chhHHHHHhhhCEEEe------ech
Confidence 2 2222 2333333221 244444433221111111 11122333222 4899999999999995 245
Q ss_pred HHHHHHHHcCCeEEecCCCCcce----ee---eeeCCceEEeCCCHHHHHHHHHHHHhC
Q 044542 373 LTLIEAMHCGRTVLTPNYPSIVR----TV---VVNEELGYTFSPNVKSFVEALELVIRD 424 (465)
Q Consensus 373 ~~~~EAma~G~PvI~s~~gg~~~----e~---v~~~~~G~l~~~d~~~la~~i~~ll~~ 424 (465)
.++.|+|...+|||-.-.....- .. ......|-++. +.+++.++|.....+
T Consensus 296 Sv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~-~~~~li~ai~~~~~~ 353 (388)
T COG1887 296 SVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE-TQEELIDAIKPYDED 353 (388)
T ss_pred HHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc-cHHHHHHHHHhhhcc
Confidence 59999999999999753221100 00 11223455555 788999999988886
No 191
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=94.40 E-value=0.077 Score=55.01 Aligned_cols=129 Identities=13% Similarity=0.042 Sum_probs=93.9
Q ss_pred EEEEEeeccccccCHHH-HHHHH---HHhhhcC----CCeEEEEEeCCcc-----hhHHHH---hc----------C--C
Q 044542 288 LVMGVAGRLVRDKGHPL-LYEAF---SSITRDH----PGVYLLVAGTGPW-----GRRYAE---LG----------Q--N 339 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~-ll~a~---~~l~~~~----~~~~l~ivG~g~~-----~~~~~~---l~----------~--~ 339 (465)
+..+++-|+..+|+..+ ++..+ .++++.- ....+++.|.... ++.++. ++ + +
T Consensus 530 lfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lk 609 (798)
T PRK14985 530 IFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDKLK 609 (798)
T ss_pred cchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhCCcee
Confidence 77778899999999888 65554 4444330 2377888886311 111111 11 2 7
Q ss_pred eEEcCCCChhHHHHHHHhcCeEEecccC-CCCCcHHHHHHHHcCCeEEecCCCCcceeeeee--CCceEEeCCCHHHHHH
Q 044542 340 VKVLGALEAHQLSEFYNALDVFVNPTLR-PQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVN--EELGYTFSPNVKSFVE 416 (465)
Q Consensus 340 V~~~g~v~~~~~~~~~~~aDv~v~ps~~-~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~--~~~G~l~~~d~~~la~ 416 (465)
|.|+....-.-...++.++|+-...|.. .|..|++-+-+|.-|.+.++|--|... |+..+ +++|+.|-.+.+++.+
T Consensus 610 VVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanv-Ei~e~vG~eN~f~fG~~~~ev~~ 688 (798)
T PRK14985 610 VVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANV-EIAEQVGEENIFIFGHTVEQVKA 688 (798)
T ss_pred EEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHH-HHHHHhCcCcEEEeCCCHHHHHH
Confidence 9999988777788899999999986652 488899999999999999999888877 66554 7899999876666554
Q ss_pred H
Q 044542 417 A 417 (465)
Q Consensus 417 ~ 417 (465)
.
T Consensus 689 ~ 689 (798)
T PRK14985 689 L 689 (798)
T ss_pred H
Confidence 3
No 192
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.35 E-value=0.15 Score=52.98 Aligned_cols=128 Identities=14% Similarity=0.089 Sum_probs=94.4
Q ss_pred EEEEEeeccccccCHHH-HHHH---HHHhhhcCC-----CeEEEEEeCCcc-----hhHHHH---h----------cC--
Q 044542 288 LVMGVAGRLVRDKGHPL-LYEA---FSSITRDHP-----GVYLLVAGTGPW-----GRRYAE---L----------GQ-- 338 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~-ll~a---~~~l~~~~~-----~~~l~ivG~g~~-----~~~~~~---l----------~~-- 338 (465)
+..+++-|+..+|+..+ ++.. +.++++. | +..+++.|.... ++.++. + .+
T Consensus 528 lfdvq~KR~heYKRq~LNil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~l 606 (794)
T TIGR02093 528 IFDVQVKRLHEYKRQLLNVLHVIYLYNRIKED-PPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKL 606 (794)
T ss_pred cchhhheechhhhHHHHHHhhhHHHHHHHHhC-CCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCce
Confidence 67778899999999988 5554 4445433 3 467888886311 111111 1 13
Q ss_pred CeEEcCCCChhHHHHHHHhcCeEEecccC-CCCCcHHHHHHHHcCCeEEecCCCCcceeeeee--CCceEEeCCCHHHHH
Q 044542 339 NVKVLGALEAHQLSEFYNALDVFVNPTLR-PQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVN--EELGYTFSPNVKSFV 415 (465)
Q Consensus 339 ~V~~~g~v~~~~~~~~~~~aDv~v~ps~~-~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~--~~~G~l~~~d~~~la 415 (465)
+|.|+....-.-...++.+||+-..-|.. .|..|+.-+-+|.-|.+.++|--|... |+.++ ++++++|-.+.++..
T Consensus 607 kVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanv-Ei~e~vG~eN~fiFG~~~~ev~ 685 (794)
T TIGR02093 607 KVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANV-EIREEVGAENIFIFGLTVEEVE 685 (794)
T ss_pred eEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhH-HHHHHhCcccEEEcCCCHHHHH
Confidence 79999988777788899999999986652 488899999999999999999888887 77665 789999987766666
Q ss_pred HH
Q 044542 416 EA 417 (465)
Q Consensus 416 ~~ 417 (465)
+.
T Consensus 686 ~~ 687 (794)
T TIGR02093 686 AL 687 (794)
T ss_pred HH
Confidence 43
No 193
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=93.42 E-value=0.43 Score=44.62 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=48.0
Q ss_pred hHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC-eEEecCCCCcc-eeeeeeCCceEEeCC-CHHHHHHHHH
Q 044542 349 HQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR-TVLTPNYPSIV-RTVVVNEELGYTFSP-NVKSFVEALE 419 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~-PvI~s~~gg~~-~e~v~~~~~G~l~~~-d~~~la~~i~ 419 (465)
.+..+.|+.+..++.|.-. ..+..-++|||++|| |||.++.--.+ ++++.=....+.++. +..+|.+.|+
T Consensus 228 ~~~~~~l~~S~FCL~p~G~-~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~ 300 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGD-GPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILR 300 (302)
T ss_pred hHHHHhcccCeEEEECCCC-CcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHh
Confidence 5688999999999998743 347889999999998 88887643332 134433455666665 5555544443
No 194
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=93.30 E-value=2.2 Score=43.04 Aligned_cols=133 Identities=17% Similarity=0.097 Sum_probs=73.9
Q ss_pred EEEEEeecccc-----ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchh-HHHHhc----CCeEEcCCCChhHHHHHHHh
Q 044542 288 LVMGVAGRLVR-----DKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGR-RYAELG----QNVKVLGALEAHQLSEFYNA 357 (465)
Q Consensus 288 ~~l~~~Grl~~-----~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~-~~~~l~----~~V~~~g~v~~~~~~~~~~~ 357 (465)
.+++..|.... .+-...+..+++.+ +++.|++.=.+.... ..+.+. .+|...+|+|+.++. +..
T Consensus 279 vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~----~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~ll--l~H 352 (496)
T KOG1192|consen 279 VVYISFGSMVNSADLPEEQKKELAKALESL----QGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLL--LDH 352 (496)
T ss_pred eEEEECCcccccccCCHHHHHHHHHHHHhC----CCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHh--cCC
Confidence 66667787753 33344555566655 455555554432222 122332 479999999988876 333
Q ss_pred cCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCC----cceeeeeeCCceEEeCC--CHHHHHHHHHHHHhCChHHHH
Q 044542 358 LDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPS----IVRTVVVNEELGYTFSP--NVKSFVEALELVIRDGPKVLQ 430 (465)
Q Consensus 358 aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg----~~~e~v~~~~~G~l~~~--d~~~la~~i~~ll~~~~~~~~ 430 (465)
--+..+-++ -|++ +++|++.+|+|+|+.+.-+ ....+...+..+++... ....+.+++..++.+ ++..+
T Consensus 353 ~~v~~FvTH--gG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~-~~y~~ 427 (496)
T KOG1192|consen 353 PAVGGFVTH--GGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILEN-EEYKE 427 (496)
T ss_pred CcCcEEEEC--Cccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcC-hHHHH
Confidence 323333343 3444 5599999999999644321 11112333444444433 333378888888887 54433
No 195
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=92.55 E-value=0.3 Score=41.32 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=30.4
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCC
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNG 260 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ng 260 (465)
++...+|..++.|+++++.+.+ .|++++++.+..-+
T Consensus 133 W~~~~~D~y~Vase~~~~~l~~-~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 133 WIHPGVDRYFVASEEVKEELIE-RGIPPERIHVTGIP 168 (169)
T ss_pred eecCCCCEEEECCHHHHHHHHH-cCCChhHEEEeCcc
Confidence 3346789999999999999999 79999999886543
No 196
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=92.45 E-value=0.57 Score=44.43 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=68.6
Q ss_pred cccccccCCC--CCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHH--------------hc
Q 044542 274 VRFPEKLGVP--ANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAE--------------LG 337 (465)
Q Consensus 274 ~~~r~~~g~~--~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~--------------l~ 337 (465)
..+.+++|++ .++..++..++- +.--+..++++++... ..+.+++.++ .-...++. .+
T Consensus 169 ~~~~~~lg~~~~~~~~~~vslF~Y--e~~~l~~ll~~~~~~~---~pv~llvp~g-~~~~~~~~~~~~~~~~~g~~~~~g 242 (374)
T PF10093_consen 169 AAFLRRLGLPEPEPGALRVSLFCY--ENAALASLLDAWAASP---KPVHLLVPEG-RALNSLAAWLGDALLQAGDSWQRG 242 (374)
T ss_pred HHHHHHcCCCCCCCCCeEEEEEeC--CchHHHHHHHHHhcCC---CCeEEEecCC-ccHHHHHHHhccccccCccccccC
Confidence 3445556664 122244434442 2223777778777543 3577777664 22222211 11
Q ss_pred -CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCC
Q 044542 338 -QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNY 390 (465)
Q Consensus 338 -~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~ 390 (465)
-.+.+++++++++...++..||+-++ ++|- +.+=|+.+|+|.|=.-.
T Consensus 243 ~l~l~~lPF~~Q~~yD~LLw~cD~NfV---RGED---SfVRAqwAgkPFvWhIY 290 (374)
T PF10093_consen 243 NLTLHVLPFVPQDDYDRLLWACDFNFV---RGED---SFVRAQWAGKPFVWHIY 290 (374)
T ss_pred CeEEEECCCCCHHHHHHHHHhCccceE---ecch---HHHHHHHhCCCceEecC
Confidence 46788999999999999999999888 6777 89999999999996443
No 197
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=92.25 E-value=0.24 Score=42.53 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=66.3
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC--CcEEEEEeCCCCCCCCC-cccCCcceEEEeecCC-C-ccccCCCCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAAR--GHEIHVFTAPSDRKPHN-DVHQGNLHVHFAANDH-G-SVNLNNDGA 155 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~-~~~~~~~~~ 155 (465)
+.++++.. .-|--..+..|++.|.++ |+.+.+-+....+.... ........+.+.+... . ..++.+..+
T Consensus 22 ~~iWiHa~------SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~ 95 (186)
T PF04413_consen 22 PLIWIHAA------SVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWR 95 (186)
T ss_dssp T-EEEE-S------SHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH-
T ss_pred CcEEEEEC------CHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhC
Confidence 56666642 246567789999999987 78877776654433221 1111122233333221 1 112226778
Q ss_pred CcEEEecCCc-hhHHh----hhcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccC
Q 044542 156 FDYVHTESVS-LPHWR----AKMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYN 230 (465)
Q Consensus 156 ~DiI~~~~~~-~~~~~----~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 230 (465)
||+++..... .+..+ ..++|-+++.-.-. .... ..+.++..+. +..++..|
T Consensus 96 P~~~i~~EtElWPnll~~a~~~~ip~~LvNarls----------~~s~------------~~~~~~~~~~--r~~l~~f~ 151 (186)
T PF04413_consen 96 PDLLIWVETELWPNLLREAKRRGIPVVLVNARLS----------ERSF------------RRYRRFPFLF--RPLLSRFD 151 (186)
T ss_dssp -SEEEEES----HHHHHH-----S-EEEEEE------------------------------------HHH--HHHGGG-S
T ss_pred CCEEEEEccccCHHHHHHHhhcCCCEEEEeeeec----------cccc------------hhhhhhHHHH--HHHHHhCC
Confidence 9988776542 22222 33567222222210 0000 1111112222 26678999
Q ss_pred EEEEeChhHHHHHHHHhCCCCCCEEEecC
Q 044542 231 QHICISNSAAEVLVKIYQLPQRNVHVILN 259 (465)
Q Consensus 231 ~ii~~S~~~~~~~~~~~~~~~~ki~vi~n 259 (465)
.|.+.|+..++.+.+ .|.+++++.+..|
T Consensus 152 ~i~aqs~~da~r~~~-lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 152 RILAQSEADAERFRK-LGAPPERVHVTGN 179 (186)
T ss_dssp EEEESSHHHHHHHHT-TT-S--SEEE---
T ss_pred EEEECCHHHHHHHHH-cCCCcceEEEeCc
Confidence 999999999999999 7999999999887
No 198
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.93 E-value=1.6 Score=39.34 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=69.3
Q ss_pred CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceee-------eeeCCceEEeCCC
Q 044542 338 QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTV-------VVNEELGYTFSPN 410 (465)
Q Consensus 338 ~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~-------v~~~~~G~l~~~d 410 (465)
-+|..++++|+++..+++..||+-++ ++|. +.+-|..+|+|.+=.=.+--. +. .-+..++.+
T Consensus 238 lrvvklPFvpqddyd~LL~lcD~n~V---RGED---SFVRAq~agkPflWHIYpQde-ntHl~KLeaFldky~~~l---- 306 (370)
T COG4394 238 LRVVKLPFVPQDDYDELLWLCDFNLV---RGED---SFVRAQLAGKPFLWHIYPQDE-NTHLAKLEAFLDKYCPFL---- 306 (370)
T ss_pred eEEEEecCCcHhHHHHHHHhccccee---ecch---HHHHHHHcCCCcEEEecCCcc-ccHHHHHHHHHHHhCCCC----
Confidence 46777899999999999999999887 5666 889999999999864433221 11 011112222
Q ss_pred HHHHHHHHHHHHhC---Ch---------HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 411 VKSFVEALELVIRD---GP---------KVLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 411 ~~~la~~i~~ll~~---~~---------~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
+.+.++++..+..+ .+ .....+.+.+.++....+-....++++.+++++.
T Consensus 307 p~~~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek~ 368 (370)
T COG4394 307 PPNTAKALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEKI 368 (370)
T ss_pred CHHHHHHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHHh
Confidence 23334444433321 01 1233455566666666666667777888877764
No 199
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=91.57 E-value=1.2 Score=44.09 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=31.9
Q ss_pred cccccCCCCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 69 NKLCFGPTFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 69 ~~l~~~~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
-+++.+-..+.|||++. ||.+-.-..|++.|.++|++|+++...
T Consensus 110 ~~~~~~~~~~~mkILVT----------GatGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 110 GRVPVGIGRKRLRIVVT----------GGAGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred CCCCcccccCCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34455556677999887 444445668999999999999988643
No 200
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=91.19 E-value=2.4 Score=41.67 Aligned_cols=149 Identities=13% Similarity=0.055 Sum_probs=76.1
Q ss_pred eEEEEeCC-C------CCCCCCChHHHHHHHHHHHHHhC--------Cc----EEEEEeCCCCCCCCC------c-c-cC
Q 044542 81 KLAVFSKT-W------PIGAAPGGMERHASTLYHALAAR--------GH----EIHVFTAPSDRKPHN------D-V-HQ 133 (465)
Q Consensus 81 kIl~v~~~-~------p~~~~~gG~~~~~~~l~~~L~~~--------G~----~V~v~~~~~~~~~~~------~-~-~~ 133 (465)
+|+++++. | -..|..||--.++..++++|.+. |- +|.++|.--.+.... + . ..
T Consensus 274 ~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt 353 (550)
T PF00862_consen 274 NVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGT 353 (550)
T ss_dssp EEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTE
T ss_pred EEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCC
Confidence 89999863 2 11247799889999999999752 43 477777644333221 1 1 11
Q ss_pred CcceE-EEeecCC-----------CccccC--------------CCCCCcEEEecCC--ch-hHHh--hhcCCcEEEEec
Q 044542 134 GNLHV-HFAANDH-----------GSVNLN--------------NDGAFDYVHTESV--SL-PHWR--AKMVPNVAVTWH 182 (465)
Q Consensus 134 ~~~~v-~~~~~~~-----------~~~~~~--------------~~~~~DiI~~~~~--~~-~~~~--~~~~p~~v~~~h 182 (465)
.+..| +...... ..|.+. ....||+||.|.. .+ +..+ +.++| ...+-|
T Consensus 354 ~~a~IlRvPF~~~~gi~~kwisrf~lWPyLe~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~-~~~iaH 432 (550)
T PF00862_consen 354 ENARILRVPFGPEKGILRKWISRFDLWPYLEEFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVT-QCFIAH 432 (550)
T ss_dssp SSEEEEEE-ESESTEEE-S---GGG-GGGHHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-E-EEEE-S
T ss_pred CCcEEEEecCCCCcchhhhccchhhchhhHHHHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCc-eehhhh
Confidence 11222 2221111 123333 3578999999964 22 2222 34667 888889
Q ss_pred chhHHHHh-hhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccCEEEEeChhHHH
Q 044542 183 GIWYEVMH-SKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYNQHICISNSAAE 241 (465)
Q Consensus 183 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~ 241 (465)
...-.-+. ++.+ ..-...-+....++..+...+..+|.||+-+.....
T Consensus 433 sLek~Ky~~s~~~-----------w~e~e~~Yhfs~qftAd~iamn~adfIItST~QEI~ 481 (550)
T PF00862_consen 433 SLEKTKYEDSDLY-----------WKEIEEKYHFSCQFTADLIAMNAADFIITSTYQEIA 481 (550)
T ss_dssp S-HHHHHHTTTTT-----------SHHHHHHH-HHHHHHHHHHHHHHSSEEEESSHHHHH
T ss_pred ccccccccccCCC-----------HHHHHhhccchhhhhHHHHHhhcCCEEEEcchHhhc
Confidence 76432211 1111 111124556666777777889999999987755443
No 201
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=91.03 E-value=1.7 Score=41.55 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=62.6
Q ss_pred cEEEEEeeccccccCH--HHHHHHHHHhhhcCCCeEEEEEeCCc--chhHHHHhc-----C-CeEEcCCCChhHHHHHHH
Q 044542 287 SLVMGVAGRLVRDKGH--PLLYEAFSSITRDHPGVYLLVAGTGP--WGRRYAELG-----Q-NVKVLGALEAHQLSEFYN 356 (465)
Q Consensus 287 ~~~l~~~Grl~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~l~-----~-~V~~~g~v~~~~~~~~~~ 356 (465)
+++++..|.-.+.|.. +.+.+.++.+.++ +..+++.|.+. +.+..+++. . .+.+.|..+-.++..+++
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 259 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALID 259 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHH
Confidence 3666566665455553 4666777777653 56788888643 222233332 2 345788888899999999
Q ss_pred hcCeEEecccCCCCCcHHHHHHHHcCCeEEec
Q 044542 357 ALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTP 388 (465)
Q Consensus 357 ~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s 388 (465)
.||++|-+ ++- .+==|.|.|+|+|+-
T Consensus 260 ~a~l~Vs~----DSG--p~HlAaA~g~p~v~L 285 (344)
T TIGR02201 260 HARLFIGV----DSV--PMHMAAALGTPLVAL 285 (344)
T ss_pred hCCEEEec----CCH--HHHHHHHcCCCEEEE
Confidence 99999974 222 455589999999974
No 202
>PLN02206 UDP-glucuronate decarboxylase
Probab=90.08 E-value=1.9 Score=42.79 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=30.2
Q ss_pred ccccCCCCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeC
Q 044542 70 KLCFGPTFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTA 121 (465)
Q Consensus 70 ~l~~~~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 121 (465)
++.++...+.|||++. ||.+-.=..|++.|.++|++|.++..
T Consensus 110 ~~~~~~~~~~~kILVT----------GatGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 110 KIPLGLKRKGLRVVVT----------GGAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred cCccccccCCCEEEEE----------CcccHHHHHHHHHHHHCcCEEEEEeC
Confidence 3445556677998886 34444556788999999999998753
No 203
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.94 E-value=1.8 Score=39.04 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=30.1
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPH 128 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~ 128 (465)
++||||+.... |-. ..-+..|+++|.+.| +|+|+++.......
T Consensus 4 ~~M~ILltNDD---Gi~----a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 46 (257)
T PRK13932 4 KKPHILVCNDD---GIE----GEGIHVLAASMKKIG-RVTVVAPAEPHSGM 46 (257)
T ss_pred CCCEEEEECCC---CCC----CHHHHHHHHHHHhCC-CEEEEcCCCCCCCC
Confidence 46899987754 111 223678889998887 89999988765443
No 204
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=88.54 E-value=1.7 Score=38.87 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=29.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPH 128 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~ 128 (465)
||||+.... |=...-+..|+++|+ .+++|+|+++.......
T Consensus 1 mrILlTNDD-------Gi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 1 MRILLTNDD-------GIHAPGIRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred CeEEEecCC-------ccCCHHHHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 799987764 222233678899998 78999999998765543
No 205
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=88.47 E-value=2 Score=40.47 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=58.6
Q ss_pred cccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHH--------------hc-CCeEEcCCCChhHHHHHHHhcCeEE
Q 044542 298 RDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAE--------------LG-QNVKVLGALEAHQLSEFYNALDVFV 362 (465)
Q Consensus 298 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~--------------l~-~~V~~~g~v~~~~~~~~~~~aDv~v 362 (465)
+.-.+..++++++... ..+.+++-.+ .-...+.. .+ -.+.+++++++++...++-.||+-+
T Consensus 191 e~~al~~ll~~~~~~~---~pv~lLvp~G-r~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~Nf 266 (371)
T TIGR03837 191 ENAALPALLDALAQSG---SPVHLLVPEG-RALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDLNF 266 (371)
T ss_pred CChhHHHHHHHHHhCC---CCeEEEecCC-ccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChhcE
Confidence 3445778888887653 3466555442 22222211 11 4678899999999999999999988
Q ss_pred ecccCCCCCcHHHHHHHHcCCeEEecCC
Q 044542 363 NPTLRPQGLDLTLIEAMHCGRTVLTPNY 390 (465)
Q Consensus 363 ~ps~~~eg~~~~~~EAma~G~PvI~s~~ 390 (465)
+ ++|- +.+-|..+|+|.|=--.
T Consensus 267 V---RGED---SFVRAqWAgkPfvWhIY 288 (371)
T TIGR03837 267 V---RGED---SFVRAQWAGKPFVWHIY 288 (371)
T ss_pred e---echh---HHHHHHHcCCCceeecc
Confidence 8 6777 89999999999996433
No 206
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.00 E-value=1.1 Score=33.76 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=31.4
Q ss_pred HHHHHHHhcCeEEecccCC--CCCcHHHHHHHHcCCeEEecCCCCcc
Q 044542 350 QLSEFYNALDVFVNPTLRP--QGLDLTLIEAMHCGRTVLTPNYPSIV 394 (465)
Q Consensus 350 ~~~~~~~~aDv~v~ps~~~--eg~~~~~~EAma~G~PvI~s~~gg~~ 394 (465)
.+...+..+|++|+++.+- ...-.+--+|-..|+|++.++..|..
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 4899999999999976431 11223445667889999998865543
No 207
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=84.02 E-value=4.7 Score=36.25 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=29.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPH 128 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~ 128 (465)
||||+.... |=...-++.|+++|++.| +|+|+++.......
T Consensus 1 M~ILltNDD-------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 1 MKILLTNDD-------GIHSPGIRALYQALKELG-EVTVVAPARQRSGT 41 (244)
T ss_pred CeEEEECCC-------CCCCHhHHHHHHHHHhCC-CEEEEeCCCCcccc
Confidence 799977653 222234788999999988 99999988765443
No 208
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=83.70 E-value=1.3 Score=34.65 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=26.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
|||+++....-. -...+ .....|+.+..++||+|.++...+-.
T Consensus 1 Mki~fvmDpi~~-i~~~k--DTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIES-IKPYK--DTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG---TTT---HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHH-CCCCC--ChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 799999974311 12222 23567888889999999999887643
No 209
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=82.93 E-value=1.9 Score=34.73 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=23.7
Q ss_pred CChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 95 PGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 95 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.+|.-.-...++++|.++||||.+.+...
T Consensus 8 t~Ghv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 8 TRGHVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp SHHHHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred ChhHHHHHHHHHHHHhccCCeEEEeeccc
Confidence 46766778899999999999999888765
No 210
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=82.75 E-value=6 Score=35.64 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=29.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPH 128 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~ 128 (465)
||||+.... |=...-+..|+++|.+. ++|+|+++.......
T Consensus 1 M~ILlTNDD-------Gi~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~ 41 (250)
T PRK00346 1 MRILLTNDD-------GIHAPGIRALAEALREL-ADVTVVAPDRERSGA 41 (250)
T ss_pred CeEEEECCC-------CCCChhHHHHHHHHHhC-CCEEEEeCCCCCcCC
Confidence 789887764 11122377889999988 799999998765443
No 211
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=82.70 E-value=4.4 Score=33.32 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=31.4
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|||++|.... ...|-....+..+++.+.+.|+++.++...+
T Consensus 1 Mkilii~gS~---r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSP---RKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSS---STTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcC---CCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 8999999873 2346666778888888888899999997665
No 212
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=80.39 E-value=14 Score=30.02 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=55.7
Q ss_pred EEEEEeeccccccCHHHHHHH------HHHhhhcCCCeEEEEEeCCc----c-hhHHHHhcCCeEEcCCCChhHHHHHHH
Q 044542 288 LVMGVAGRLVRDKGHPLLYEA------FSSITRDHPGVYLLVAGTGP----W-GRRYAELGQNVKVLGALEAHQLSEFYN 356 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~ll~a------~~~l~~~~~~~~l~ivG~g~----~-~~~~~~l~~~V~~~g~v~~~~~~~~~~ 356 (465)
-+++.+|.-. +|.++.+ ...|.+.+-.--++=.|.|. . .+... ......+.|+-=...+.+.++
T Consensus 5 ~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~-k~~gl~id~y~f~psl~e~I~ 79 (170)
T KOG3349|consen 5 TVFVTVGTTS----FDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIR-KNGGLTIDGYDFSPSLTEDIR 79 (170)
T ss_pred EEEEEecccc----HHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhc-ccCCeEEEEEecCccHHHHHh
Confidence 4566777533 6666643 35555554322233367661 1 11121 224455555443367889999
Q ss_pred hcCeEEecccCCCCCcHHHHHHHHcCCeEEecCC
Q 044542 357 ALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNY 390 (465)
Q Consensus 357 ~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~ 390 (465)
.||++|-.. +.| +++|.+..|+|.|+--.
T Consensus 80 ~AdlVIsHA--GaG---S~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 80 SADLVISHA--GAG---SCLETLRLGKPLIVVVN 108 (170)
T ss_pred hccEEEecC--Ccc---hHHHHHHcCCCEEEEeC
Confidence 999999633 344 89999999999987543
No 213
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=78.82 E-value=18 Score=28.89 Aligned_cols=62 Identities=10% Similarity=0.246 Sum_probs=46.2
Q ss_pred EEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCC
Q 044542 321 LLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPS 392 (465)
Q Consensus 321 l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg 392 (465)
++=.|+|+.... +..++.|+--.+++.+++..|.+++. ..++| +++.++..++|.|......
T Consensus 34 IvQyGn~d~kpv-----agl~v~~F~~~~kiQsli~darIVIS--HaG~G---SIL~~~rl~kplIv~pr~s 95 (161)
T COG5017 34 IVQYGNGDIKPV-----AGLRVYGFDKEEKIQSLIHDARIVIS--HAGEG---SILLLLRLDKPLIVVPRSS 95 (161)
T ss_pred eeeecCCCcccc-----cccEEEeechHHHHHHHhhcceEEEe--ccCcc---hHHHHhhcCCcEEEEECch
Confidence 444677654431 34678888888999999999997774 44677 8999999999998765443
No 214
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=77.63 E-value=5.5 Score=31.81 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=31.9
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcE-EEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHE-IHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~-V~v~~~~~~ 124 (465)
||++++...-| ..+-..+....+++++.+.||+ +.||...+.
T Consensus 1 m~~~iv~~~~P---y~~~~~~~al~~A~aa~~~gh~v~~vFf~~Dg 43 (128)
T PRK00207 1 MRYAIAVTGPA---YGTQQASSAYQFAQALLAEGHELVSVFFYQDG 43 (128)
T ss_pred CEEEEEEcCCC---CCCHHHHHHHHHHHHHHhCCCCeeEEEEehHH
Confidence 79999988744 2244557788999999999998 577776653
No 215
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=77.33 E-value=6.9 Score=28.12 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=38.2
Q ss_pred HhhcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcc
Q 044542 224 RFFSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPE 271 (465)
Q Consensus 224 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~ 271 (465)
.....+|.|++......+.+++ .|. .++..+|-++|+..+.+...
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~-~G~--~~V~yLPLAa~~~~~~p~~~ 58 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRN-LGA--ENVFYLPLAANPERFRPIPV 58 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHH-cCC--CCEEEccccCCHHHhCcccC
Confidence 4467889999999999999998 564 79999999999999988654
No 216
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=76.76 E-value=16 Score=36.52 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=59.7
Q ss_pred hHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC-eEEecCCCCcc-eeeeeeCCceEEeCC-CHHHHHHHHHHHHhC-
Q 044542 349 HQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR-TVLTPNYPSIV-RTVVVNEELGYTFSP-NVKSFVEALELVIRD- 424 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~-PvI~s~~gg~~-~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~- 424 (465)
..+.+.++.|..++.|.-+ +...-.+.||+..|| |||.++.-..+ ++.+.-.+.++.++. +...+ |.+.+..
T Consensus 335 ~~y~~~m~~S~FCL~p~Gd-~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~---~~~iL~~i 410 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPGD-TPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPEL---IKNILLSI 410 (464)
T ss_pred chHHHHhhcCeEEECCCCC-CcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhH---HHHHHHhc
Confidence 6788999999999999865 666779999999998 99988753222 123333355666653 44444 3444433
Q ss_pred ChHHHHHHHHHHHHHHHhhCC
Q 044542 425 GPKVLQRKGLACKEHALSMFT 445 (465)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~fs 445 (465)
+.+....|.++....+.++|-
T Consensus 411 ~~~~~~~m~~~v~~~v~r~~~ 431 (464)
T KOG1021|consen 411 PEEEVLRMRENVIRLVPRHFL 431 (464)
T ss_pred CHHHHHHHHHHHHHHHHhhEE
Confidence 334556666665554555443
No 217
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=76.31 E-value=4.6 Score=34.16 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=28.1
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRK 126 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 126 (465)
|||+++... |- .=..+++...++||+|+-++......
T Consensus 1 mKIaiIgAs-------G~---~Gs~i~~EA~~RGHeVTAivRn~~K~ 37 (211)
T COG2910 1 MKIAIIGAS-------GK---AGSRILKEALKRGHEVTAIVRNASKL 37 (211)
T ss_pred CeEEEEecC-------ch---hHHHHHHHHHhCCCeeEEEEeChHhc
Confidence 799999764 22 23467888889999999999876543
No 218
>PRK09739 hypothetical protein; Provisional
Probab=76.25 E-value=7.2 Score=33.88 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=30.8
Q ss_pred CceeEEEEeCCCCCCCCCCh-HHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGG-MERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG-~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.+|||++|..+ | ..+| ....+..+++.+.+.|++|+++-...
T Consensus 2 ~mmkiliI~~s-p---~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~ 44 (199)
T PRK09739 2 QSMRIYLVWAH-P---RHDSLTAKVAEAIHQRAQERGHQVEELDLYR 44 (199)
T ss_pred CCceEEEEEcC-C---CCCCcHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 36899999876 2 3344 44567778888888999999887654
No 219
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=76.03 E-value=2.8 Score=33.26 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=30.6
Q ss_pred hHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcc
Q 044542 349 HQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIV 394 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~ 394 (465)
+++.+++..+|++|--|. ++..--.+-.++.+|+|+|..-+|...
T Consensus 59 ~~l~~~~~~~DVvIDfT~-p~~~~~~~~~~~~~g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN-PDAVYDNLEYALKHGVPLVIGTTGFSD 103 (124)
T ss_dssp S-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-SSSHH
T ss_pred hhHHHhcccCCEEEEcCC-hHHhHHHHHHHHhCCCCEEEECCCCCH
Confidence 678888888999998774 355555667788899999987766543
No 220
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=75.60 E-value=27 Score=31.73 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=61.3
Q ss_pred CCcHHHHHHHHcCCeEEecCCCCc--ceeeeeeCCceEEeCCCH--HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCC
Q 044542 370 GLDLTLIEAMHCGRTVLTPNYPSI--VRTVVVNEELGYTFSPNV--KSFVEALELVIRDGPKVLQRKGLACKEHALSMFT 445 (465)
Q Consensus 370 g~~~~~~EAma~G~PvI~s~~gg~--~~e~v~~~~~G~l~~~d~--~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs 445 (465)
+++..+.=-|+|+-.|+.....-. -.+.+.....-+-+..|- ++|.++|+.+.++ ++..+++++++++++++..+
T Consensus 156 ~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~-~~~a~~Ia~~~~~~~~~~L~ 234 (256)
T smart00672 156 AWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEH-DKKAQEIGKRGSEFIQQNLS 234 (256)
T ss_pred cchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcC
Confidence 444555556788877776653210 002233333333333343 4499999999888 89999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 044542 446 ATKMASAYERFFLR 459 (465)
Q Consensus 446 ~~~~~~~~~~~~~~ 459 (465)
.+.+..-+..++.+
T Consensus 235 ~~~~~~Y~~~ll~e 248 (256)
T smart00672 235 MEDVYDYMFHLLQE 248 (256)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888887765
No 221
>PRK09271 flavodoxin; Provisional
Probab=74.91 E-value=6.6 Score=32.75 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=31.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|||+++-.+ ..|..+..+..+++.|.+.|++|.+....
T Consensus 1 mkv~IvY~S-----~tGnTe~~A~~ia~~l~~~g~~v~~~~~~ 38 (160)
T PRK09271 1 MRILLAYAS-----LSGNTREVAREIEERCEEAGHEVDWVETD 38 (160)
T ss_pred CeEEEEEEc-----CCchHHHHHHHHHHHHHhCCCeeEEEecc
Confidence 788888653 56889999999999999999998876543
No 222
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=74.08 E-value=6.2 Score=32.35 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=31.9
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
||+|++-.. ..|-....+..++..|.+.|++|++.-...
T Consensus 1 Mk~LIlYst-----r~GqT~kIA~~iA~~L~e~g~qvdi~dl~~ 39 (175)
T COG4635 1 MKTLILYST-----RDGQTRKIAEYIASHLRESGIQVDIQDLHA 39 (175)
T ss_pred CceEEEEec-----CCCcHHHHHHHHHHHhhhcCCeeeeeehhh
Confidence 788887543 557788889999999999999999986654
No 223
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=72.62 E-value=14 Score=33.27 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=28.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPH 128 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~ 128 (465)
||||+.... |-..-| +..|+++|++ +++|+|+++.......
T Consensus 1 M~ILlTNDD---Gi~a~G----i~aL~~~l~~-~~~V~VvAP~~~qSg~ 41 (253)
T PRK13935 1 MNILVTNDD---GITSPG----IIILAEYLSE-KHEVFVVAPDKERSAT 41 (253)
T ss_pred CeEEEECCC---CCCCHH----HHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 789887764 112223 6778888876 5799999998765443
No 224
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=72.32 E-value=19 Score=32.76 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=27.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC---CcEEEEEeCCCCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAAR---GHEIHVFTAPSDRKPHN 129 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~---G~~V~v~~~~~~~~~~~ 129 (465)
||||+.... |-..-| +..|+++|.+. |++|+|+++........
T Consensus 1 M~ILlTNDD---GI~a~G----l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~g 46 (261)
T PRK13931 1 MRILITNDD---GINAPG----LEVLEQIATELAGPDGEVWTVAPAFEQSGVG 46 (261)
T ss_pred CeEEEEcCC---CCCCHh----HHHHHHHHHHhccCCCeEEEEeCCCCCCCCc
Confidence 788887764 112234 45566666653 47999999987655433
No 225
>PRK06756 flavodoxin; Provisional
Probab=72.00 E-value=8.8 Score=31.44 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=31.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|||+++-.+ ..|..+..+..+++.|.+.|++|.++...
T Consensus 2 mkv~IiY~S-----~tGnTe~vA~~ia~~l~~~g~~v~~~~~~ 39 (148)
T PRK06756 2 SKLVMIFAS-----MSGNTEEMADHIAGVIRETENEIEVIDIM 39 (148)
T ss_pred ceEEEEEEC-----CCchHHHHHHHHHHHHhhcCCeEEEeehh
Confidence 688888653 56889999999999999999999877543
No 226
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=71.99 E-value=22 Score=30.90 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=49.8
Q ss_pred hHHHHHHH--hcCeEEecccCCCCCcHHHHHHHH-----cCCeEEec--CCCCcceeeeeeCCceEEeCC-CHHHHHHHH
Q 044542 349 HQLSEFYN--ALDVFVNPTLRPQGLDLTLIEAMH-----CGRTVLTP--NYPSIVRTVVVNEELGYTFSP-NVKSFVEAL 418 (465)
Q Consensus 349 ~~~~~~~~--~aDv~v~ps~~~eg~~~~~~EAma-----~G~PvI~s--~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i 418 (465)
++...++. +.|+.++--+-+.|-|+.++..+- +.+-+|+. +..-+. +.+.-|...+++.| ..+-|.+++
T Consensus 36 ~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~-~alr~Gv~DYLiKPf~~eRl~~aL 114 (224)
T COG4565 36 EEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIK-EALRYGVVDYLIKPFTFERLQQAL 114 (224)
T ss_pred HHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHH-HHHhcCchhheecceeHHHHHHHH
Confidence 55555555 557777755446778888888776 44444432 222333 44556777889999 999999998
Q ss_pred HHHHhC
Q 044542 419 ELVIRD 424 (465)
Q Consensus 419 ~~ll~~ 424 (465)
.+....
T Consensus 115 ~~y~~~ 120 (224)
T COG4565 115 TRYRQK 120 (224)
T ss_pred HHHHHH
Confidence 887654
No 227
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=71.72 E-value=22 Score=31.64 Aligned_cols=123 Identities=16% Similarity=0.119 Sum_probs=68.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcc-cCCcceEEEeecCCCccccCCCCCCcE
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDV-HQGNLHVHFAANDHGSVNLNNDGAFDY 158 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~Di 158 (465)
|+|+++. .+++-..+++.|.+.||+|.++-........... ......+.-.........-..-.+.|+
T Consensus 1 m~iiIiG-----------~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIG-----------AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEEC-----------CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 5677763 3566778999999999999999776543221100 011111111111112222224567898
Q ss_pred EEecCCc-----hhHHhh---hcCCcEEEEecchhHHHHhhhhhhhhhhcCCCCCCCchhhhhhhhHHHHHHHHhhcccC
Q 044542 159 VHTESVS-----LPHWRA---KMVPNVAVTWHGIWYEVMHSKLFGELFSNQNGVLPGSMTELQEAMPRLVDEIRFFSSYN 230 (465)
Q Consensus 159 I~~~~~~-----~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 230 (465)
+++-+.. ....++ .+.|+++...++..+. +.+.+ -.+|
T Consensus 70 vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~--------------------------~~~~~--------~g~~ 115 (225)
T COG0569 70 VVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHE--------------------------KVLEK--------LGAD 115 (225)
T ss_pred EEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHH--------------------------HHHHH--------cCCc
Confidence 8876531 222222 3578788888864321 00000 1268
Q ss_pred EEEEeChhHHHHHHHHh
Q 044542 231 QHICISNSAAEVLVKIY 247 (465)
Q Consensus 231 ~ii~~S~~~~~~~~~~~ 247 (465)
.++.+-..+...+.+..
T Consensus 116 ~ii~Pe~~~~~~l~~~i 132 (225)
T COG0569 116 VIISPEKLAAKRLARLI 132 (225)
T ss_pred EEECHHHHHHHHHHHHh
Confidence 88888888888887754
No 228
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=71.24 E-value=50 Score=30.15 Aligned_cols=106 Identities=10% Similarity=0.044 Sum_probs=64.0
Q ss_pred hHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhC-Ch
Q 044542 349 HQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRD-GP 426 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~-~~ 426 (465)
..-..-++.||++|.-...-|++=-++++.. -+.+++....++.. + -.....-+..++ +...++++|.+.+.. +|
T Consensus 44 p~d~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~-~-~~~~dPH~Wldp~n~~~~a~~I~~~L~~~dP 120 (264)
T cd01020 44 PTDAAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHD-D-KEGDNPHLWYDPETMSKVANALADALVKADP 120 (264)
T ss_pred HHHHHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeeccccc-C-CCCCCCceecCHhHHHHHHHHHHHHHHHhCc
Confidence 4455778889999985432355545555544 35566655443321 0 011234566677 788888888877762 26
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 427 KVLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 427 ~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
+..+...+++.++..+ ++..-+++.+.+..+
T Consensus 121 ~~~~~y~~N~~~~~~~---l~~l~~~~~~~~~~~ 151 (264)
T cd01020 121 DNKKYYQANAKKFVAS---LKPLAAKIAELSAKY 151 (264)
T ss_pred ccHHHHHHHHHHHHHH---HHHHHHHHHHHHhhC
Confidence 6666777777777665 455666666666554
No 229
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=70.97 E-value=28 Score=30.92 Aligned_cols=81 Identities=20% Similarity=0.373 Sum_probs=60.3
Q ss_pred EEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeC-------CcchhHHH---HhcCCeEEcCCC--ChhHHHHHHH
Q 044542 289 VMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGT-------GPWGRRYA---ELGQNVKVLGAL--EAHQLSEFYN 356 (465)
Q Consensus 289 ~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-------g~~~~~~~---~l~~~V~~~g~v--~~~~~~~~~~ 356 (465)
.++++|-+.-.-|...+-+-+..++.++ ++.|+|++. |-.++.++ +.+-+|.-+|.- ++.|+.+++.
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~ 80 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFID 80 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHhh
Confidence 3668999988889988889999998875 577888864 33333333 445566666643 6789999999
Q ss_pred hcCeEEecccCCCC
Q 044542 357 ALDVFVNPTLRPQG 370 (465)
Q Consensus 357 ~aDv~v~ps~~~eg 370 (465)
..+-+|=|..++++
T Consensus 81 ~~~~ilRP~N~p~~ 94 (266)
T COG1692 81 NADRILRPANYPDG 94 (266)
T ss_pred cccceeccCCCCCC
Confidence 99999988876555
No 230
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=70.90 E-value=50 Score=30.68 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=58.9
Q ss_pred EEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecc--c
Q 044542 289 VMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPT--L 366 (465)
Q Consensus 289 ~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps--~ 366 (465)
+.+|.|. ..-|=+.+++++- ++..++.+++++...+.+.. +. ..|.-....+..++...+..+|++|..+ .
T Consensus 3 l~GyyG~--~N~GDe~~l~~~l--~~l~~~~~~~v~s~~p~~~~--~~-~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l 75 (298)
T TIGR03609 3 LCGYYGF--GNLGDEALLAALL--RELPPGVEPTVLSNDPAETA--KL-YGVEAVNRRSLLAVLRALRRADVVIWGGGSL 75 (298)
T ss_pred EEEecCC--CCcchHHHHHHHH--HhcCCCCeEEEecCChHHHH--hh-cCceEEccCCHHHHHHHHHHCCEEEECCccc
Confidence 4555553 4678888888873 33346788888876543321 11 2555555566678899999999999853 1
Q ss_pred CCCCCcH--------HHHHHHHcCCeEEecCCC
Q 044542 367 RPQGLDL--------TLIEAMHCGRTVLTPNYP 391 (465)
Q Consensus 367 ~~eg~~~--------~~~EAma~G~PvI~s~~g 391 (465)
..+..+. .+.-|..+|+|++....|
T Consensus 76 ~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 76 LQDVTSFRSLLYYLGLMRLARLFGKPVILWGQG 108 (298)
T ss_pred ccCCcccccHHHHHHHHHHHHHcCCCEEEEecc
Confidence 1121111 234466789999875543
No 231
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=70.51 E-value=13 Score=36.17 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=62.2
Q ss_pred CCcHHHHHHHHcCCeEEecCCCCc--ceeeeeeCCceEEeCC--CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCC
Q 044542 370 GLDLTLIEAMHCGRTVLTPNYPSI--VRTVVVNEELGYTFSP--NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFT 445 (465)
Q Consensus 370 g~~~~~~EAma~G~PvI~s~~gg~--~~e~v~~~~~G~l~~~--d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs 445 (465)
+++..+-=-|+||-.|+..+..-. -.+.+.....-+=+.. |-++|.++|+.+.++ ++..++++++|++++++..+
T Consensus 225 ~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~-~~~A~~IA~~g~~f~~~~L~ 303 (395)
T PF05686_consen 225 AWSGRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAH-DDEAQRIAENGQRFAREYLT 303 (395)
T ss_pred eeehhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccC-hHHHHHHHHHHHHHHHHHhh
Confidence 344445555777877776542210 0012333444444554 789999999988888 89999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 044542 446 ATKMASAYERFFLR 459 (465)
Q Consensus 446 ~~~~~~~~~~~~~~ 459 (465)
.+.+..-+..++.+
T Consensus 304 ~~~~~~Y~~~LL~e 317 (395)
T PF05686_consen 304 MEDVYCYWRRLLLE 317 (395)
T ss_pred hhHHHHHHHHHHHH
Confidence 99998888777765
No 232
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=70.23 E-value=13 Score=32.31 Aligned_cols=48 Identities=17% Similarity=0.350 Sum_probs=34.3
Q ss_pred CCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCc
Q 044542 281 GVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGP 328 (465)
Q Consensus 281 g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~ 328 (465)
|++.+....+...|........+.+++.+.++.++..+.+++++|..+
T Consensus 131 gi~~~~ivaist~g~~~~~~~~~~f~~Gl~em~~rl~P~~ilvyG~~~ 178 (200)
T PF14386_consen 131 GIPKGSIVAISTNGCINNKEDKKLFLDGLREMLKRLRPKHILVYGGMP 178 (200)
T ss_pred hcccCCEEEEEEecccCCHHHHHHHHHHHHHHHhccCCCeEEEECCch
Confidence 566666556666675555556778888888888777778899999544
No 233
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=69.76 E-value=7.5 Score=31.03 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=27.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|||++.... ++....+..+.+.|.+.|++|.++.+..
T Consensus 1 k~i~l~vtG-------s~~~~~~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTG-------SIAAYKAPDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-S-------SGGGGGHHHHHHHHHTTTSEEEEEESHH
T ss_pred CEEEEEEEC-------HHHHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 588888763 2223348899999999999999988764
No 234
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=69.56 E-value=8.3 Score=32.55 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHHHHH--HhCCcEEEEEeCCCCCCC
Q 044542 94 APGGMERHASTLYHAL--AARGHEIHVFTAPSDRKP 127 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L--~~~G~~V~v~~~~~~~~~ 127 (465)
+.||....+..|.+.+ ....++..+++..+....
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~ 41 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSR 41 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccH
Confidence 3499999999999999 233677778887765544
No 235
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=69.32 E-value=5.5 Score=37.49 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=28.1
Q ss_pred CCCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 75 PTFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 75 ~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|++.+|||+++.. |+++. .++..|++.||+|+++....
T Consensus 1 ~~~~~m~I~IiG~--------GaiG~---~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGT--------GAIGG---FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECC--------CHHHH---HHHHHHHHCCCeEEEEEeCC
Confidence 4566799999954 44443 46677888999999998754
No 236
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=67.47 E-value=16 Score=31.61 Aligned_cols=38 Identities=11% Similarity=0.033 Sum_probs=28.5
Q ss_pred ceeEEEEeCCCCCCCCCChHHHH--HHHHHHHHHhCCcEEEEEeCCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERH--ASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~--~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
.+||++-.. ||...+ ...+++.|.+.|++|+++.+...
T Consensus 5 ~k~IllgVT--------Gsiaa~k~a~~lir~L~k~G~~V~vv~T~aA 44 (196)
T PRK08305 5 GKRIGFGLT--------GSHCTYDEVMPEIEKLVDEGAEVTPIVSYTV 44 (196)
T ss_pred CCEEEEEEc--------CHHHHHHHHHHHHHHHHhCcCEEEEEECHhH
Confidence 457777654 555544 48999999999999999987754
No 237
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.61 E-value=15 Score=33.68 Aligned_cols=203 Identities=10% Similarity=0.059 Sum_probs=106.1
Q ss_pred cccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcccCcccccccCCCCCCcEEEEEeecc--ccccCHHH
Q 044542 227 SSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPEAGVRFPEKLGVPANVSLVMGVAGRL--VRDKGHPL 304 (465)
Q Consensus 227 ~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~r~~~g~~~~~~~~l~~~Grl--~~~Kg~~~ 304 (465)
++|-.++.-.....+.+.+ .|++. ..+.|+.- +-..+.+.. ..+. .+ ..+.+-+..|.- +.+.++..
T Consensus 177 rrc~~vf~rD~~Taq~L~~-rgvna---~~vGnpmm-D~L~p~~~~-~q~l----~~-g~~viaLLPGsR~pea~~nl~~ 245 (412)
T COG4370 177 RRCWAVFPRDALTAQHLAN-RGVNA---AYVGNPMM-DGLPPPERD-PQLL----LT-GVPVIALLPGSRVPEAQTNLAV 245 (412)
T ss_pred ccceeeeccccccHHHHHh-cCCch---hhccChhh-ccCCCccCC-chhh----cc-CCceEEecCCCCChHHHhhHHH
Confidence 5677777777777888877 46532 34444331 112221111 1111 11 222333355654 33678888
Q ss_pred HHHHHHHhhhcCCCeEEEEEeC----Ccc---hhHHHH---------hc-CCeEEcCCCChhHHHHHHHhcCeEEecccC
Q 044542 305 LYEAFSSITRDHPGVYLLVAGT----GPW---GRRYAE---------LG-QNVKVLGALEAHQLSEFYNALDVFVNPTLR 367 (465)
Q Consensus 305 ll~a~~~l~~~~~~~~l~ivG~----g~~---~~~~~~---------l~-~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~ 367 (465)
++.++..+...... +++.+. -+. ....++ .+ ++..+. +++....+.+..+|+.+-.
T Consensus 246 il~slcal~~~~a~--vvfw~ai~~~lpl~~l~~l~e~~gWq~~ad~~~kdnc~l~--lsqqsfadiLH~adaalgm--- 318 (412)
T COG4370 246 ILGSLCALPAMFAL--VVFWAAIAPELPLLLLWTLEERQGWQPLADRFGKDNCSLW--LSQQSFADILHAADAALGM--- 318 (412)
T ss_pred HHHHHhhhHHHHHH--HHHHhccCcCCCHHHHHHHHHhcCcchhhhhhccCceEEE--EeHHHHHHHHHHHHHHHHh---
Confidence 88866555432211 111121 010 011111 11 344333 3458899999999986532
Q ss_pred CCCCcHHHHHHHHcCCeEEecCCCCcceeeee---------eCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 044542 368 PQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVV---------NEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKE 438 (465)
Q Consensus 368 ~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~---------~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~ 438 (465)
-|+..=.+...|+|||....-|- ++.. -+..-.++.+.+..-+.+..+++.| ++..+.++.++++
T Consensus 319 ---AGTAtEQavGLGkPvi~fPg~GP--Qy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~d-p~r~~air~nGqr 392 (412)
T COG4370 319 ---AGTATEQAVGLGKPVIGFPGQGP--QYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLGD-PQRLTAIRHNGQR 392 (412)
T ss_pred ---ccchHHHhhccCCceeecCCCCC--CcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhcC-hHHHHHHHhcchh
Confidence 23466678899999999875432 2110 0222233443444444444558888 8888888889988
Q ss_pred HHHhhCCHHHHHHHH
Q 044542 439 HALSMFTATKMASAY 453 (465)
Q Consensus 439 ~~~~~fs~~~~~~~~ 453 (465)
++-+-=...++++.+
T Consensus 393 RiGqaGaa~rIAe~l 407 (412)
T COG4370 393 RIGQAGAARRIAEEL 407 (412)
T ss_pred hccCcchHHHHHHHH
Confidence 876643344444443
No 238
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=65.46 E-value=14 Score=30.31 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=31.8
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
+|||+++-.+ ..|..+.++..+++.|...|+++.+....
T Consensus 1 M~ki~Ivy~S-----~tGnTe~vA~~i~~~l~~~~~~~~~~~~~ 39 (151)
T COG0716 1 MMKILIVYGS-----RTGNTEKVAEIIAEELGADGFEVDIDIRP 39 (151)
T ss_pred CCeEEEEEEc-----CCCcHHHHHHHHHHHhccCCceEEEeecC
Confidence 4789998764 56999999999999999999999555444
No 239
>PRK05246 glutathione synthetase; Provisional
Probab=62.05 E-value=15 Score=34.71 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=31.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRK 126 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 126 (465)
|||+++..... ...........|+++.+++||+|.++++.+-..
T Consensus 2 ~~~~~~~~~~~---~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~ 45 (316)
T PRK05246 2 MKVAFQMDPIE---SINIKKDSTFAMMLEAQRRGHELFYYEPDDLSL 45 (316)
T ss_pred ceEEEEeCCHH---HCCCCCChHHHHHHHHHHcCCEEEEEehhhcEE
Confidence 79999986431 222223345679999999999999999887544
No 240
>PRK06703 flavodoxin; Provisional
Probab=61.44 E-value=17 Score=29.78 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=30.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|||+++-.+ ..|..+..+..+++.|.+.|++|.+.-..
T Consensus 2 mkv~IiY~S-----~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 2 AKILIAYAS-----MSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 677777543 56888999999999999999999887554
No 241
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=61.42 E-value=88 Score=28.16 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=39.0
Q ss_pred CCeEEcCC--CChhHHHHHHHhcCeEEe--cccCCCCCcHHHHHHHHcCCeEEecCCCC
Q 044542 338 QNVKVLGA--LEAHQLSEFYNALDVFVN--PTLRPQGLDLTLIEAMHCGRTVLTPNYPS 392 (465)
Q Consensus 338 ~~V~~~g~--v~~~~~~~~~~~aDv~v~--ps~~~eg~~~~~~EAma~G~PvI~s~~gg 392 (465)
++|.+.|. ++.+++.+.+..+|++|. +|..-.+...-+.+|-..|.|+|.-+...
T Consensus 151 P~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 151 PHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred CCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 78888887 366778888999999887 34332333334456888999988777654
No 242
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=60.89 E-value=45 Score=28.96 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=50.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEeCCc--chhHH---HHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHH
Q 044542 305 LYEAFSSITRDHPGVYLLVAGTGP--WGRRY---AELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAM 379 (465)
Q Consensus 305 ll~a~~~l~~~~~~~~l~ivG~g~--~~~~~---~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAm 379 (465)
.+++++++++++|+ +++|-|. ..+.. .+.+.+..+.+.++ +++.++-++.++..+|.. -.|.=+.+|+
T Consensus 42 a~~~I~~l~~~~~~---~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~-~~vi~~a~~~~i~~iPG~---~TptEi~~A~ 114 (201)
T PRK06015 42 ALDAIRAVAAEVEE---AIVGAGTILNAKQFEDAAKAGSRFIVSPGTT-QELLAAANDSDVPLLPGA---ATPSEVMALR 114 (201)
T ss_pred HHHHHHHHHHHCCC---CEEeeEeCcCHHHHHHHHHcCCCEEECCCCC-HHHHHHHHHcCCCEeCCC---CCHHHHHHHH
Confidence 45667777777765 4556542 22333 33446666666664 788888889999988863 3577888888
Q ss_pred HcCCeEE
Q 044542 380 HCGRTVL 386 (465)
Q Consensus 380 a~G~PvI 386 (465)
.+|.-+|
T Consensus 115 ~~Ga~~v 121 (201)
T PRK06015 115 EEGYTVL 121 (201)
T ss_pred HCCCCEE
Confidence 8898776
No 243
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=60.63 E-value=35 Score=28.69 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=39.4
Q ss_pred HHHHHHhhhcCCCeEEEEEeCCcc-hh----HHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccC
Q 044542 306 YEAFSSITRDHPGVYLLVAGTGPW-GR----RYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLR 367 (465)
Q Consensus 306 l~a~~~l~~~~~~~~l~ivG~g~~-~~----~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~ 367 (465)
+++++++.....+-+.+|+|.|.. .. .+.+.+.+|.+.... .+++.+.++.||++|..+..
T Consensus 32 v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~-~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 32 LELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK-TKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred HHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC-chhHHHHHhhCCEEEEcCCC
Confidence 344443322234678999999864 32 233333457777665 47899999999999997643
No 244
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=60.58 E-value=57 Score=25.95 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=58.1
Q ss_pred CeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeee--eCCceEEeCC----CHH
Q 044542 339 NVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVV--NEELGYTFSP----NVK 412 (465)
Q Consensus 339 ~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~--~~~~G~l~~~----d~~ 412 (465)
.|.+....+.+++.+.+..+|+++..+. ..+.-.+++++ -++-+|++...|.. .+-. -.+.|+.+.. ..+
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~--~~~~~~~l~~~-~~Lk~I~~~~~G~d-~id~~~a~~~gI~V~n~~g~~~~ 95 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSG--TPLTAEVLEAA-PNLKLISTAGAGVD-NIDLEAAKERGIPVTNVPGYNAE 95 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTT--STBSHHHHHHH-TT-SEEEESSSSCT-TB-HHHHHHTTSEEEE-TTTTHH
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCC--CCcCHHHHhcc-ceeEEEEEcccccC-cccHHHHhhCeEEEEEeCCcCCc
Confidence 7888888888999999999999998542 24777888888 88888888777764 3211 1234555542 455
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHH
Q 044542 413 SFVEALELVIRDGPKVLQRKGLACKE 438 (465)
Q Consensus 413 ~la~~i~~ll~~~~~~~~~~~~~~~~ 438 (465)
+.|+.. -...+.++++.+.+.+
T Consensus 96 aVAE~a----~~T~e~~~~~~~~~~~ 117 (133)
T PF00389_consen 96 AVAEHA----GYTDEARERMAEIAAE 117 (133)
T ss_dssp HHHHHH----TGBHHHHHHHHHHHHH
T ss_pred chhccc----hhHHHHHHHHHHHHHH
Confidence 555544 2224444444444333
No 245
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=59.82 E-value=18 Score=29.20 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=27.7
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEE
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHV 118 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v 118 (465)
|||+++-.+ ..|-.+..+..+++.|...|++|.+
T Consensus 1 M~i~IiY~S-----~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 1 MRILLAYLS-----LSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred CeEEEEEEC-----CCChHHHHHHHHHHHHhhCCeeEEe
Confidence 688877643 5688889999999999999999873
No 246
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=59.34 E-value=1.4e+02 Score=26.99 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=61.8
Q ss_pred EEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhc----CCeEEcCCCChhHHHHHHHh--cCeE
Q 044542 288 LVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELG----QNVKVLGALEAHQLSEFYNA--LDVF 361 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~----~~V~~~g~v~~~~~~~~~~~--aDv~ 361 (465)
-+|+..|+ |++ ..|....+. ..+-..++-.........+++ .-|-..|..+.+.=..++.+ +|++
T Consensus 130 rVflt~G~----~~l----~~f~~~~~~-~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q~~id~v 200 (257)
T COG2099 130 RVFLTTGR----QNL----AHFVAADAH-SHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKALLEQYRIDVV 200 (257)
T ss_pred cEEEecCc----cch----HHHhcCccc-ceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHHHHHHhCCCEE
Confidence 45556675 444 333333221 123344443333333344444 33444677766655566655 5666
Q ss_pred Ee-cccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHh
Q 044542 362 VN-PTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIR 423 (465)
Q Consensus 362 v~-ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~ 423 (465)
|. -|-...|+--++-=|...|+|||.-..+ + +. ..+ ..+..++.+++..+..
T Consensus 201 ItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp-~--~~----~~~---~~~v~~~~~~l~~~~~ 253 (257)
T COG2099 201 VTKNSGGAGGTYEKIEAARELGIPVIMIERP-I--DY----PAG---FGDVTDLDAALAQLRR 253 (257)
T ss_pred EEccCCcccCcHHHHHHHHHcCCcEEEEecC-C--cC----Ccc---cchhhHHHHHHHHHHH
Confidence 65 2221125667888999999999998766 2 11 111 1156666666665543
No 247
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=59.06 E-value=32 Score=26.98 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=30.1
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCC-cEEEEEeCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARG-HEIHVFTAPSDR 125 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~ 125 (465)
||+.++...-|.+ .-.......+++++.+.| ++|.+|...+.-
T Consensus 1 m~~~Ivvt~ppYg---~q~a~~A~~fA~all~~gh~~v~iFly~DgV 44 (126)
T COG1553 1 MKYTIVVTGPPYG---TESAFSALRFAEALLEQGHELVRLFLYQDGV 44 (126)
T ss_pred CeEEEEEecCCCc---cHHHHHHHHHHHHHHHcCCeEEEEEEeeccc
Confidence 6888887763321 133456889999999985 788888877643
No 248
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=58.74 E-value=88 Score=28.18 Aligned_cols=79 Identities=10% Similarity=0.155 Sum_probs=48.8
Q ss_pred CCeEEcCC-CCh---hHHHHHHHhcCeEEe--cccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCH
Q 044542 338 QNVKVLGA-LEA---HQLSEFYNALDVFVN--PTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNV 411 (465)
Q Consensus 338 ~~V~~~g~-v~~---~~~~~~~~~aDv~v~--ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~ 411 (465)
++|.+.|. +|. ++..+....||++|. +|..-++...-+..|...|.|+|.-+.+... .+....+++..+.
T Consensus 155 P~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~----~d~~~~~~i~~~~ 230 (244)
T PRK14138 155 PNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETP----LDDIATLKYNMDV 230 (244)
T ss_pred CCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCC----CCcceeEEEeCCH
Confidence 78888886 454 445677788999887 3432233323334677789999987765432 2233455666566
Q ss_pred HHHHHHHHH
Q 044542 412 KSFVEALEL 420 (465)
Q Consensus 412 ~~la~~i~~ 420 (465)
.+....+.+
T Consensus 231 ~~~l~~l~~ 239 (244)
T PRK14138 231 VEFANRVMS 239 (244)
T ss_pred HHHHHHHHH
Confidence 666666554
No 249
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=58.68 E-value=13 Score=32.75 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=23.9
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|||+++. |.+..-..++..|.+.||+|.++...
T Consensus 1 MkI~IIG----------G~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLG----------GTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEc----------CCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 6888882 22334557889999999999887543
No 250
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=58.33 E-value=9.3 Score=32.61 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=46.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcE--EEEEeCCCCCCCC-CcccCCcceEEEeecCCC---------c
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHE--IHVFTAPSDRKPH-NDVHQGNLHVHFAANDHG---------S 147 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~--V~v~~~~~~~~~~-~~~~~~~~~v~~~~~~~~---------~ 147 (465)
|||+++... +| .....+.+++.+.+++ +..+.+..+.... .................. .
T Consensus 1 mrI~~~~Sg-------~~--~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (181)
T PF00551_consen 1 MRIVFFGSG-------SG--SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVADEKNFQPRSENDEEL 71 (181)
T ss_dssp EEEEEEESS-------SS--HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEHHGGGSSSHHHHHHHH
T ss_pred CEEEEEEcC-------CC--HHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEeccccCCCchHhhhhHH
Confidence 899999753 22 4567788899999887 3333333322221 111112222222221111 0
Q ss_pred cccCCCCCCcEEEecCCc--hhHHhhhcCCcEEEEecc
Q 044542 148 VNLNNDGAFDYVHTESVS--LPHWRAKMVPNVAVTWHG 183 (465)
Q Consensus 148 ~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 183 (465)
....+..+||++++-++. ++.-+-...+.-.+.+|.
T Consensus 72 ~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHp 109 (181)
T PF00551_consen 72 LELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHP 109 (181)
T ss_dssp HHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEES
T ss_pred HHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEee
Confidence 111167899999887653 332222322324777775
No 251
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=58.09 E-value=23 Score=32.62 Aligned_cols=84 Identities=13% Similarity=0.212 Sum_probs=51.3
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC-cc-----------cCCcceEEEeecCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN-DV-----------HQGNLHVHFAANDH 145 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~-----------~~~~~~v~~~~~~~ 145 (465)
+..+|.+... ...|-++.+..|.+.|.++||.|-|++.++...... .+ ...+..++..+...
T Consensus 50 ~a~viGITG~------PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG 123 (323)
T COG1703 50 NAHVIGITGV------PGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRG 123 (323)
T ss_pred CCcEEEecCC------CCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCc
Confidence 3445665432 235778899999999999999999999887654432 11 12222233332221
Q ss_pred CccccC----------CCCCCcEEEecCCchh
Q 044542 146 GSVNLN----------NDGAFDYVHTESVSLP 167 (465)
Q Consensus 146 ~~~~~~----------~~~~~DiI~~~~~~~~ 167 (465)
..-... ....+|+|++.+.+..
T Consensus 124 ~lGGlS~at~~~i~~ldAaG~DvIIVETVGvG 155 (323)
T COG1703 124 TLGGLSRATREAIKLLDAAGYDVIIVETVGVG 155 (323)
T ss_pred cchhhhHHHHHHHHHHHhcCCCEEEEEecCCC
Confidence 111111 7789999999986543
No 252
>PLN00016 RNA-binding protein; Provisional
Probab=57.36 E-value=13 Score=36.05 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=29.0
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
+|||++++.. .||.+..-..+++.|.+.||+|++++....
T Consensus 52 ~~~VLVt~~~------~GatG~iG~~lv~~L~~~G~~V~~l~R~~~ 91 (378)
T PLN00016 52 KKKVLIVNTN------SGGHAFIGFYLAKELVKAGHEVTLFTRGKE 91 (378)
T ss_pred cceEEEEecc------CCCceeEhHHHHHHHHHCCCEEEEEecCCc
Confidence 4688887543 244444556788999999999999987653
No 253
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=56.78 E-value=26 Score=32.69 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=31.9
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTA 121 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 121 (465)
.++||++++.... +...-.-.....++++|.+.||+|..+..
T Consensus 2 ~~~~i~vl~gg~s--~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDS--PEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCC--CchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 4779999987642 24444456788999999999999988754
No 254
>PRK06849 hypothetical protein; Provisional
Probab=56.60 E-value=17 Score=35.33 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=28.2
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.+||||++... ......+++.|.+.||+|+++....
T Consensus 3 ~~~~VLI~G~~----------~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGAR----------APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCC----------cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 36799988543 2246789999999999999997764
No 255
>PRK07308 flavodoxin; Validated
Probab=56.43 E-value=33 Score=27.90 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 94 APGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
..|..+..+..+++.|.+.|+++.+.-..
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~~~ 39 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDECT 39 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEecc
Confidence 44888999999999999999998876544
No 256
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=55.91 E-value=32 Score=29.39 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=28.4
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
+|+||+|-++ ..++++|++.|.+.|++|.|+-..
T Consensus 1 ~~~IL~IDNy----------DSFtyNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 1 MMMILLIDNY----------DSFTYNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred CceEEEEECc----------cchHHHHHHHHHHcCCceEEEECC
Confidence 3688888764 457999999999999999998766
No 257
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=55.66 E-value=29 Score=30.15 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=31.8
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
.||++.|+.. ...-|-...+.+|+.+|++.|++|.++-.+..
T Consensus 16 ~~kvI~v~s~----kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 16 EIKVLLITSV----KPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CCcEEEEecC----CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3787777654 23356677899999999999999988876543
No 258
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=55.52 E-value=1.6e+02 Score=26.62 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=38.9
Q ss_pred CCeEEcCCCChhHHHHHHHh--cCeEEe-cccCCCCCcHHHHHHHHcCCeEEecCCCCcc
Q 044542 338 QNVKVLGALEAHQLSEFYNA--LDVFVN-PTLRPQGLDLTLIEAMHCGRTVLTPNYPSIV 394 (465)
Q Consensus 338 ~~V~~~g~v~~~~~~~~~~~--aDv~v~-ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~ 394 (465)
+-+-..|..+.+.=..+++. +|++|. -|-. .|+.-++--|..+|+|||.-+.+...
T Consensus 173 ~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG~-~g~~eKi~AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 173 NIIAMQGPFSKELNRALFRQYGIDVLVTKESGG-SGFDEKIEAARELGIPVIVIKRPPEP 231 (249)
T ss_pred hEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCc-hhhHHHHHHHHHcCCeEEEEeCCCCC
Confidence 34555777776666667766 455554 2322 37778999999999999998877654
No 259
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=54.81 E-value=29 Score=30.12 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=31.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHh-CCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAA-RGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~ 123 (465)
|||+++..+ ..|-.++.+..+++.+.+ .|.+|.++....
T Consensus 2 ~kilIvy~S-----~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~ 41 (200)
T PRK03767 2 AKVLVLYYS-----MYGHIETMAEAVAEGAREVAGAEVTIKRVPE 41 (200)
T ss_pred CeEEEEEcC-----CCCHHHHHHHHHHHHHhhcCCcEEEEEeccc
Confidence 689999765 346677888889999988 899999998653
No 260
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=54.76 E-value=72 Score=22.81 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=31.3
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKP 127 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 127 (465)
.++++++.+ +........+++.|+++|+.|..+-.......
T Consensus 17 ~~v~i~HG~------~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S 57 (79)
T PF12146_consen 17 AVVVIVHGF------GEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRS 57 (79)
T ss_pred EEEEEeCCc------HHHHHHHHHHHHHHHhCCCEEEEECCCcCCCC
Confidence 577777654 55556788999999999999998877765544
No 261
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=54.66 E-value=13 Score=41.39 Aligned_cols=49 Identities=27% Similarity=0.464 Sum_probs=36.5
Q ss_pred ccccccCCCCCceeEEEEeCCCCCCCCCChHH------HHHHHHHHHHHhCCcEEE
Q 044542 68 WNKLCFGPTFEKLKLAVFSKTWPIGAAPGGME------RHASTLYHALAARGHEIH 117 (465)
Q Consensus 68 ~~~l~~~~~~~~mkIl~v~~~~p~~~~~gG~~------~~~~~l~~~L~~~G~~V~ 117 (465)
|-+|...+...| ||++|-.+||++...=|.. ..+.++.++|++.||+|.
T Consensus 239 W~~LR~kpN~eK-KVAII~yNyPpg~~nIGaA~gLDvp~Sl~~IL~~Lke~GY~v~ 293 (1098)
T PF02514_consen 239 WARLRRKPNAEK-KVAIIYYNYPPGKGNIGAAAGLDVPESLVNILKALKEEGYDVG 293 (1098)
T ss_pred HHHHhccccccc-EEEEEEecCCCCCCcccccCCCCcHHHHHHHHHHHHHCCCCCC
Confidence 666654444444 9999999999765444444 568899999999999995
No 262
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=54.62 E-value=46 Score=31.03 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHhhhcCCCeEEEEEeCCcc--hhHHHHhcCCeEEcCC-CChhHHHHHHHhcCeEEec
Q 044542 301 GHPLLYEAFSSITRDHPGVYLLVAGTGPW--GRRYAELGQNVKVLGA-LEAHQLSEFYNALDVFVNP 364 (465)
Q Consensus 301 g~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~~~~l~~~V~~~g~-v~~~~~~~~~~~aDv~v~p 364 (465)
+.+...+|++.+.++.++..++|.+++.. ++.+....+.+.+.+. -+.+|+. +++.||..|.+
T Consensus 189 ~~~Yy~~Ai~~i~~~~~~~~f~ifSDD~~w~k~~l~~~~~~~~~~~~~~~~~Dl~-lms~C~~~Iis 254 (298)
T PF01531_consen 189 DKDYYKKAIEYIREKVKNPKFFIFSDDIEWCKENLKFSNGDVYFSGNNSPYEDLY-LMSQCKHFIIS 254 (298)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHhhcCCcEEEECCCCHHHHHH-HHHhCCcEEEC
Confidence 35677899999998888999999998543 1223333355667665 4556776 68999999986
No 263
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=54.36 E-value=1.5e+02 Score=29.21 Aligned_cols=67 Identities=7% Similarity=-0.002 Sum_probs=40.3
Q ss_pred EEEEEeCCcchhHHHHhcC---CeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcc
Q 044542 320 YLLVAGTGPWGRRYAELGQ---NVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIV 394 (465)
Q Consensus 320 ~l~ivG~g~~~~~~~~l~~---~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~ 394 (465)
.+.|++.... ..+++.+ ... ..+.+++.+.+..+|+++..+.- +-++.-. .+.-+.|.+.-|.+-.+
T Consensus 207 ~I~V~nRt~~--ra~~La~~~~~~~---~~~~~~l~~~l~~aDiVI~aT~a--~~~vi~~-~~~~~~~~~~iDLavPR 276 (414)
T PRK13940 207 QIMLANRTIE--KAQKITSAFRNAS---AHYLSELPQLIKKADIIIAAVNV--LEYIVTC-KYVGDKPRVFIDISIPQ 276 (414)
T ss_pred EEEEECCCHH--HHHHHHHHhcCCe---EecHHHHHHHhccCCEEEECcCC--CCeeECH-HHhCCCCeEEEEeCCCC
Confidence 6788876432 2233331 122 23447889999999999997632 3333333 34457888887875444
No 264
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=54.35 E-value=39 Score=30.34 Aligned_cols=81 Identities=17% Similarity=0.329 Sum_probs=49.5
Q ss_pred EEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeC-------Ccchh---HHHHhcCCeEEcCCC--ChhHHHHHHHhc
Q 044542 291 GVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGT-------GPWGR---RYAELGQNVKVLGAL--EAHQLSEFYNAL 358 (465)
Q Consensus 291 ~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-------g~~~~---~~~~l~~~V~~~g~v--~~~~~~~~~~~a 358 (465)
+|+|-+.-.-|...+.+.+.+|++++ ++.|+|+-. |-..+ ++.+++-.|.=.|.- ++.|+.+++...
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~-~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDviT~GNH~wdkkei~~~i~~~ 79 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEY-GIDFVIANGENAAGGFGITPKIAEELFKAGVDVITMGNHIWDKKEIFDFIDKE 79 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG---G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SEEE--TTTTSSTTHHHHHHH-
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhc-CCCEEEECCcccCCCCCCCHHHHHHHHhcCCCEEecCcccccCcHHHHHHhcC
Confidence 47788888889999999999999886 677888742 32333 344455555556643 678999999999
Q ss_pred CeEEecccCCCCCc
Q 044542 359 DVFVNPTLRPQGLD 372 (465)
Q Consensus 359 Dv~v~ps~~~eg~~ 372 (465)
+-+|=|..++++.|
T Consensus 80 ~~ilRPaN~p~~~p 93 (253)
T PF13277_consen 80 PRILRPANYPPGTP 93 (253)
T ss_dssp SSEE--TTS-TT-S
T ss_pred CCcEECCCCCCCCC
Confidence 98998887766433
No 265
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=54.29 E-value=1.6e+02 Score=26.16 Aligned_cols=117 Identities=11% Similarity=0.131 Sum_probs=62.8
Q ss_pred CeEEEEEeCCcchhHHHHhc--CCeEEcCC-CChhHHHHHHHhcCeEEecccCCCCCcHHH-HHHHHcCCeEEecCCCCc
Q 044542 318 GVYLLVAGTGPWGRRYAELG--QNVKVLGA-LEAHQLSEFYNALDVFVNPTLRPQGLDLTL-IEAMHCGRTVLTPNYPSI 393 (465)
Q Consensus 318 ~~~l~ivG~g~~~~~~~~l~--~~V~~~g~-v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~-~EAma~G~PvI~s~~gg~ 393 (465)
..++.++...- .+.++++. .++.+... ... ..+..+++++..+.. +...-.+ -+|-+.|.+|.+.+.+..
T Consensus 48 gA~VtVVap~i-~~el~~l~~~~~i~~~~r~~~~----~dl~g~~LViaATdD-~~vN~~I~~~a~~~~~lvn~vd~p~~ 121 (223)
T PRK05562 48 GCYVYILSKKF-SKEFLDLKKYGNLKLIKGNYDK----EFIKDKHLIVIATDD-EKLNNKIRKHCDRLYKLYIDCSDYKK 121 (223)
T ss_pred CCEEEEEcCCC-CHHHHHHHhCCCEEEEeCCCCh----HHhCCCcEEEECCCC-HHHHHHHHHHHHHcCCeEEEcCCccc
Confidence 46777777533 23344443 45666542 222 335678888776643 3333333 445577999988776544
Q ss_pred ceee-----eeeCCceEEeC-----C-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Q 044542 394 VRTV-----VVNEELGYTFS-----P-NVKSFVEALELVIRDGPKVLQRKGLACKEHALS 442 (465)
Q Consensus 394 ~~e~-----v~~~~~G~l~~-----~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~ 442 (465)
. +. +..+..-+-+. | =...+.+.|++++.+ -+.+.+.....|+.+++
T Consensus 122 ~-dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~-~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 122 G-LCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKK-YDDFIEYVTKIRNKAKK 179 (223)
T ss_pred C-eEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 4 33 33333222222 2 245666677777754 44444555556666555
No 266
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=54.08 E-value=33 Score=29.68 Aligned_cols=75 Identities=15% Similarity=0.325 Sum_probs=47.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEeCC--cchhH---HHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHH
Q 044542 305 LYEAFSSITRDHPGVYLLVAGTG--PWGRR---YAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAM 379 (465)
Q Consensus 305 ll~a~~~l~~~~~~~~l~ivG~g--~~~~~---~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAm 379 (465)
.+++++.+++++|++ ++|-| -..+. ..+.+.+..+.+..+ +++.++-+..++.++|... .|.=+.+|+
T Consensus 46 a~~~I~~l~~~~p~~---~vGAGTV~~~e~a~~a~~aGA~FivSP~~~-~~v~~~~~~~~i~~iPG~~---TptEi~~A~ 118 (196)
T PF01081_consen 46 ALEAIEALRKEFPDL---LVGAGTVLTAEQAEAAIAAGAQFIVSPGFD-PEVIEYAREYGIPYIPGVM---TPTEIMQAL 118 (196)
T ss_dssp HHHHHHHHHHHHTTS---EEEEES--SHHHHHHHHHHT-SEEEESS---HHHHHHHHHHTSEEEEEES---SHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---eeEEEeccCHHHHHHHHHcCCCEEECCCCC-HHHHHHHHHcCCcccCCcC---CHHHHHHHH
Confidence 356667677777773 34543 23333 334456666666664 7888888899999998643 566788888
Q ss_pred HcCCeEE
Q 044542 380 HCGRTVL 386 (465)
Q Consensus 380 a~G~PvI 386 (465)
.+|.-+|
T Consensus 119 ~~G~~~v 125 (196)
T PF01081_consen 119 EAGADIV 125 (196)
T ss_dssp HTT-SEE
T ss_pred HCCCCEE
Confidence 8888777
No 267
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=54.05 E-value=19 Score=32.52 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=28.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKP 127 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 127 (465)
||||+.... |...-| +..|+++|++ +++|+|+++......
T Consensus 1 M~ILvtNDD---Gi~apG----l~aL~~~l~~-~~~V~VvAP~~~~Sg 40 (253)
T PRK13933 1 MNILLTNDD---GINAEG----INTLAELLSK-YHEVIIVAPENQRSA 40 (253)
T ss_pred CeEEEEcCC---CCCChh----HHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 789887764 112223 6788888876 579999998876543
No 268
>PRK05920 aromatic acid decarboxylase; Validated
Probab=53.94 E-value=32 Score=30.01 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=28.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
+||++-... +.+......+++.|.+.|++|+++.....
T Consensus 4 krIllgITG-------siaa~ka~~lvr~L~~~g~~V~vi~T~~A 41 (204)
T PRK05920 4 KRIVLAITG-------ASGAIYGVRLLECLLAADYEVHLVISKAA 41 (204)
T ss_pred CEEEEEEeC-------HHHHHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 477776542 33335688999999999999999987753
No 269
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=53.73 E-value=31 Score=32.15 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=29.8
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
++||++++.... +...-.-.....+.++|.+.||+|+++...
T Consensus 4 ~~~v~~~~g~~~--~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTS--AEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCC--CCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 459999997642 122222234589999999999999998655
No 270
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=53.72 E-value=23 Score=30.11 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=29.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|||+++-.+ ..|-.+..+..+++.|.. |++|.++-..
T Consensus 1 MkilIvY~S-----~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~ 37 (177)
T PRK11104 1 MKTLILYSS-----RDGQTRKIASYIASELKE-GIQCDVVNLH 37 (177)
T ss_pred CcEEEEEEC-----CCChHHHHHHHHHHHhCC-CCeEEEEEhh
Confidence 688887643 557788889999999988 9999887654
No 271
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=53.56 E-value=54 Score=33.42 Aligned_cols=83 Identities=11% Similarity=0.144 Sum_probs=56.2
Q ss_pred CeEEcCCCChhHHHHHHHhcCeEEeccc--CCCCCcHHHHHHHHcC---CeEEecCCCCcceeeeeeCCceEEeCC---C
Q 044542 339 NVKVLGALEAHQLSEFYNALDVFVNPTL--RPQGLDLTLIEAMHCG---RTVLTPNYPSIVRTVVVNEELGYTFSP---N 410 (465)
Q Consensus 339 ~V~~~g~v~~~~~~~~~~~aDv~v~ps~--~~eg~~~~~~EAma~G---~PvI~s~~gg~~~e~v~~~~~G~l~~~---d 410 (465)
+.+|+-.++.+-+.++....+++|.-.. -..|||-.++|+++.- +||..- |++++.+.++...-+... |
T Consensus 534 d~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~l---glpd~fi~hg~~~el~~~~gLd 610 (627)
T COG1154 534 DPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNL---GLPDEFIDHGSPEELLAELGLD 610 (627)
T ss_pred cCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCCCceEEe---cCChHhhccCCHHHHHHHcCCC
Confidence 5678888887778999999999887321 1268999999999654 455544 444466666654433332 7
Q ss_pred HHHHHHHHHHHHhC
Q 044542 411 VKSFVEALELVIRD 424 (465)
Q Consensus 411 ~~~la~~i~~ll~~ 424 (465)
.+.+++.|..++..
T Consensus 611 ~~~i~~~i~~~l~~ 624 (627)
T COG1154 611 AEGIARRILEWLKA 624 (627)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777766654
No 272
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=53.45 E-value=64 Score=26.87 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=49.7
Q ss_pred HHhcCeEEecccCCCCCcHHHHHHH-HcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHH
Q 044542 355 YNALDVFVNPTLRPQGLDLTLIEAM-HCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKG 433 (465)
Q Consensus 355 ~~~aDv~v~ps~~~eg~~~~~~EAm-a~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~ 433 (465)
+-.||+++.|-. +| ==.||+ .+|+-||+-|.-.+.. . .....-- =++.+..++-.+... -..++.+.
T Consensus 87 Iy~ADVVLVPLE--DG---DR~EAL~~mGK~VIaIDLNPLSR-T-ar~Atit----IVDni~RA~p~~~~~-~~~lk~~~ 154 (178)
T PF02006_consen 87 IYSADVVLVPLE--DG---DRTEALVKMGKTVIAIDLNPLSR-T-ARTATIT----IVDNITRAIPNMIEF-ARELKKKD 154 (178)
T ss_pred ceeccEEEeccC--CC---cHHHHHHHcCCeEEEEeCCCccc-c-cccCcee----eehhHHHHHHHHHHH-HHHHhcCC
Confidence 346999999974 34 345776 7899999998766642 1 1111111 234566666666554 33333334
Q ss_pred HHHHHHHHhhCCHHHHHHHH
Q 044542 434 LACKEHALSMFTATKMASAY 453 (465)
Q Consensus 434 ~~~~~~~~~~fs~~~~~~~~ 453 (465)
....+.+.+.|+-++..+.-
T Consensus 155 ~~el~~iv~~~dN~~~L~~a 174 (178)
T PF02006_consen 155 REELEEIVKNYDNKKNLSEA 174 (178)
T ss_pred HHHHHHHHHhcCcHHHHHHH
Confidence 44444555668776655543
No 273
>PRK07454 short chain dehydrogenase; Provisional
Probab=53.16 E-value=22 Score=31.58 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=25.4
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
...||.++|+. ..||. -..+++.|.++|++|.++...
T Consensus 3 ~~~~k~vlItG------~sg~i---G~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 3 LNSMPRALITG------ASSGI---GKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCCCEEEEeC------CCchH---HHHHHHHHHHCCCEEEEEeCC
Confidence 34567666653 23554 457888899999998887754
No 274
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=53.09 E-value=49 Score=27.52 Aligned_cols=65 Identities=22% Similarity=0.203 Sum_probs=45.8
Q ss_pred ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchh---HHHHhcCCeEEcCCCChhHHHHHHHhcCeEEec
Q 044542 299 DKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGR---RYAELGQNVKVLGALEAHQLSEFYNALDVFVNP 364 (465)
Q Consensus 299 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~---~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~p 364 (465)
.=.+.+.++|+..+....-+.-.++-|+++... .+++.+..|...|. +..--..+.++||-|+.-
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~-~~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGA-EPGFSTALQNSADIAIIL 155 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeC-CCCChHHHHHhcCeEEeC
Confidence 345778899998885554577777778876554 44555688888884 234566788999988863
No 275
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=53.04 E-value=29 Score=28.91 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=35.0
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
+|+|+-++.. ..+|=.+.+..+++.|.++|+.|-++-....+
T Consensus 1 m~~Il~ivG~-----k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIVGY-----KNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEEec-----CCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 4688888763 67888999999999999999999998776654
No 276
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=52.90 E-value=1.4e+02 Score=25.07 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=30.0
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
...|||.+-.+ ..-|-.+.+..+++.|.+.|+.|-=+...
T Consensus 3 ~~~mki~ITG~------PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 3 KMAMKIFITGR------PGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred CcceEEEEeCC------CCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 34678887653 23567788999999999999998765544
No 277
>PRK05568 flavodoxin; Provisional
Probab=52.69 E-value=46 Score=26.80 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=29.6
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
||+++-.+ ..|..+..+..+++.+.+.|++|.++....
T Consensus 3 ~~~IvY~S-----~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~ 40 (142)
T PRK05568 3 KINIIYWS-----GTGNTEAMANLIAEGAKENGAEVKLLNVSE 40 (142)
T ss_pred eEEEEEEC-----CCchHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45555432 558899999999999999999999886554
No 278
>PLN02778 3,5-epimerase/4-reductase
Probab=52.37 E-value=25 Score=32.70 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=24.0
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEE
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVF 119 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 119 (465)
...+|||++.. |.+-.=..|++.|.++||+|++.
T Consensus 6 ~~~~~kiLVtG----------~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 6 GSATLKFLIYG----------KTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCeEEEEC----------CCCHHHHHHHHHHHhCCCEEEEe
Confidence 44568998873 33334457889999999998753
No 279
>CHL00194 ycf39 Ycf39; Provisional
Probab=51.99 E-value=20 Score=33.67 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=24.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|||+++. |.+..=..+++.|.++||+|..++...
T Consensus 1 MkIlVtG----------atG~iG~~lv~~Ll~~g~~V~~l~R~~ 34 (317)
T CHL00194 1 MSLLVIG----------ATGTLGRQIVRQALDEGYQVRCLVRNL 34 (317)
T ss_pred CEEEEEC----------CCcHHHHHHHHHHHHCCCeEEEEEcCh
Confidence 6888763 333344568888999999999998653
No 280
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=51.65 E-value=22 Score=32.30 Aligned_cols=40 Identities=23% Similarity=0.428 Sum_probs=28.1
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKP 127 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 127 (465)
||||+.... |-..-| +..|+++|.+.| +|+|+++......
T Consensus 1 M~ILlTNDD---Gi~apG----i~aL~~al~~~g-~V~VvAP~~eqSg 40 (266)
T PRK13934 1 MKILVTNDD---GVHSPG----LRLLYEFVSPLG-EVDVVAPETPKSA 40 (266)
T ss_pred CeEEEEcCC---CCCCHH----HHHHHHHHHhCC-cEEEEccCCCCcc
Confidence 788887764 112223 678889998887 8999998875543
No 281
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=51.62 E-value=1.2e+02 Score=29.66 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=62.3
Q ss_pred CcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEe-CCcchhHHHHhc-CCeEEcCCCChh---HHHHHHH--hc
Q 044542 286 VSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAG-TGPWGRRYAELG-QNVKVLGALEAH---QLSEFYN--AL 358 (465)
Q Consensus 286 ~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG-~g~~~~~~~~l~-~~V~~~g~v~~~---~~~~~~~--~a 358 (465)
++.+.+...+.++-.-..- .+.++++++|++.+++.. .....+..++.- +. ..+-++|.+ -+..+++ +-
T Consensus 49 ~p~vWiHaaSVGEv~a~~p---Lv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~-v~h~YlP~D~~~~v~rFl~~~~P 124 (419)
T COG1519 49 GPLVWIHAASVGEVLAALP---LVRALRERFPDLRILVTTMTPTGAERAAALFGDS-VIHQYLPLDLPIAVRRFLRKWRP 124 (419)
T ss_pred CCeEEEEecchhHHHHHHH---HHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCC-eEEEecCcCchHHHHHHHHhcCC
Confidence 3466667777766554444 445566677999888876 333445555443 32 233333333 3445553 46
Q ss_pred CeEEecccCCCCCcHHHHHHHHcCCeEEecC
Q 044542 359 DVFVNPTLRPQGLDLTLIEAMHCGRTVLTPN 389 (465)
Q Consensus 359 Dv~v~ps~~~eg~~~~~~EAma~G~PvI~s~ 389 (465)
|++|+.- .|-+|+.+.|+-..|+|.+.-+
T Consensus 125 ~l~Ii~E--tElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 125 KLLIIME--TELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred CEEEEEe--ccccHHHHHHHHHcCCCEEEEe
Confidence 7777743 5899999999999999999765
No 282
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=51.48 E-value=15 Score=34.47 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=30.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
|||+++....- ...-.......|+.+.+++||+|.++.+..-.
T Consensus 1 m~~~~~~~~~~---~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIE---SINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHH---HCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 79999986431 11222234678899999999999999988644
No 283
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=51.01 E-value=2.3e+02 Score=27.02 Aligned_cols=130 Identities=10% Similarity=0.013 Sum_probs=64.1
Q ss_pred CeEEEEEeCCcchhH----HHHhc-CCeEEcCCC----ChhHHH----HHHHhcCeEEeccc-CCCCCcHHHHHHHHcCC
Q 044542 318 GVYLLVAGTGPWGRR----YAELG-QNVKVLGAL----EAHQLS----EFYNALDVFVNPTL-RPQGLDLTLIEAMHCGR 383 (465)
Q Consensus 318 ~~~l~ivG~g~~~~~----~~~l~-~~V~~~g~v----~~~~~~----~~~~~aDv~v~ps~-~~eg~~~~~~EAma~G~ 383 (465)
+-+++++|.|...+. +.+.+ .+|.+.... +.+++. .+...+|+++..|. .+-..|....|.+..-.
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~ 253 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADIP 253 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhcc
Confidence 456777777655432 22222 345444332 334443 66789999998531 12445666666554322
Q ss_pred eEEecCCCCcceee--eeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 384 TVLTPNYPSIVRTV--VVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 384 PvI~s~~gg~~~e~--v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
+-+.-|..-.+ ++ +....+-.++ |.++|.+.+.+-+. .+++...++...+ +..+.+|.+.|++-
T Consensus 254 ~r~~iDLAvPR-dId~v~~~~~v~Ly--~iDdL~~i~~~n~~----~R~~~~~~ae~iI------~~~~~~~~~~~~~~ 319 (338)
T PRK00676 254 DRIVFDFNVPR-TFPWSETPFPHRYL--DMDFISEWVQKHLQ----CRKEVNNKHKLSL------REAAYKQWESYEKK 319 (338)
T ss_pred CcEEEEecCCC-CCccccccCCcEEE--EhHHHHHHHHHHHH----HHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 12334443322 22 1222233344 67777776665433 3344444444443 34455666666553
No 284
>PRK05723 flavodoxin; Provisional
Probab=50.91 E-value=28 Score=28.68 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=29.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEe
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFT 120 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 120 (465)
|||.|+-. ...|-.+.++..+++.|.+.|++|.+..
T Consensus 1 ~~i~I~yg-----S~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSG-----SVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEE-----cCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 67777754 3668889999999999999999987753
No 285
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=50.69 E-value=36 Score=29.07 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=27.6
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
+||++.... +.....+..+++.|.+.|++|.++.+...
T Consensus 2 k~Ill~vtG-------siaa~~~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 2 KNILLAVSG-------SIAAYKAADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred CEEEEEEeC-------hHHHHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 367766542 22344578999999999999999887653
No 286
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=50.54 E-value=25 Score=33.97 Aligned_cols=35 Identities=31% Similarity=0.299 Sum_probs=26.8
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
.+|||++. ||.+..-..+++.|.++||+|+.+...
T Consensus 20 ~~~~IlVt----------GgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICIT----------GAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEE----------CCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 56899876 344445668999999999999998754
No 287
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=50.54 E-value=42 Score=29.17 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=48.2
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCC--cEEEEEeCCCCCCCCCc-c-cCCcceEEEeecCCC--------
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARG--HEIHVFTAPSDRKPHND-V-HQGNLHVHFAANDHG-------- 146 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~-------- 146 (465)
+|||++++.. + +..+..+.+++.+.+ ++|.++.+........+ . ..+.+...+......
T Consensus 1 m~ki~vl~sg-------~--gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~ 71 (200)
T PRK05647 1 MKRIVVLASG-------N--GSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAA 71 (200)
T ss_pred CceEEEEEcC-------C--ChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCchhHhHHH
Confidence 3799999863 1 335678888887764 66666544433222221 1 223333222211110
Q ss_pred ccccCCCCCCcEEEecCCc--hhHHhhhcCCcEEEEecc
Q 044542 147 SVNLNNDGAFDYVHTESVS--LPHWRAKMVPNVAVTWHG 183 (465)
Q Consensus 147 ~~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 183 (465)
.....+..+||++++.++. ++..+-...+.-++.+|.
T Consensus 72 ~~~~l~~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHp 110 (200)
T PRK05647 72 LVEALDAYQPDLVVLAGFMRILGPTFVSAYEGRIINIHP 110 (200)
T ss_pred HHHHHHHhCcCEEEhHHhhhhCCHHHHhhccCCEEEEeC
Confidence 1112257789999886542 222222222324778885
No 288
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=50.51 E-value=33 Score=29.63 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=29.7
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCC-cEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARG-HEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~ 124 (465)
||||+|..+ |. +..+-..+....+++++.+.| ++|.++-....
T Consensus 1 mkiLvI~as-p~-~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~ 44 (199)
T PF02525_consen 1 MKILVINAS-PR-PEGSFSRALADAFLEGLQEAGPHEVEIRDLYEE 44 (199)
T ss_dssp EEEEEEE---SS-TTTSHHHHHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred CEEEEEEcC-CC-CccCHHHHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 899999875 21 112334566788999999999 99998876653
No 289
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=50.33 E-value=48 Score=19.05 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=20.7
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEE
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIH 117 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~ 117 (465)
|||+++.-.--...-..-...-...|.+.+.+.|.+|.
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd 38 (38)
T PF09198_consen 1 MKIAIINMGNNIQNFKTTPSSETIYLFKCISDMGLNVD 38 (38)
T ss_dssp -EEEEEESSS--SSSSSHHHHHHHHHHHHHHTTT-EEE
T ss_pred CeEEEEecCCceeceeecCccceEeHHHHHHHhCCCCC
Confidence 78888875321000111223345678899999998874
No 290
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=49.94 E-value=39 Score=30.77 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=27.9
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
+++-++|+. ..+|++ ..+++.|+++|++|.++....+
T Consensus 5 ~~~~~lITG------ASsGIG---~~~A~~lA~~g~~liLvaR~~~ 41 (265)
T COG0300 5 KGKTALITG------ASSGIG---AELAKQLARRGYNLILVARRED 41 (265)
T ss_pred CCcEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEeCcHH
Confidence 445666664 347775 4799999999999999987764
No 291
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=49.23 E-value=91 Score=26.21 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHhHHHHHhcCCCCCCCCCccCCCCCCcccccccceeeccccccCCCCCceeEEEEeCCCCCCCCCChH
Q 044542 19 LRYSTVLISALFFTSFYLFISPLRHVPEPGFLKGEGKRFIGDLRDAKFSWNKLCFGPTFEKLKLAVFSKTWPIGAAPGGM 98 (465)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~mkIl~v~~~~p~~~~~gG~ 98 (465)
.++++|++.+|+.+=.++|++..+ . | +. -++-+.++. -.
T Consensus 4 ~~~STl~LtlLl~iGL~ffiraS~--K--------------d---------Rt--------~~~~~~s~~--------p~ 42 (173)
T PF12046_consen 4 SLYSTLLLTLLLAIGLFFFIRASV--K--------------D---------RT--------EQVTFESPQ--------PP 42 (173)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHhc--c--------------c---------cE--------EEEEEEcCC--------CH
Confidence 467888888888888888877765 2 0 00 023333332 24
Q ss_pred HHHHHHHHHHHHhCCcEEEE
Q 044542 99 ERHASTLYHALAARGHEIHV 118 (465)
Q Consensus 99 ~~~~~~l~~~L~~~G~~V~v 118 (465)
...+.++...+.++||+|.=
T Consensus 43 ~~~~~~l~~yf~~r~y~v~~ 62 (173)
T PF12046_consen 43 DEVLEQLKAYFEQRNYRVAE 62 (173)
T ss_pred HHHHHHHHHHHHhcCceecc
Confidence 67889999999999998753
No 292
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=48.90 E-value=5.6 Score=40.27 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 96 GGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
+..-..+..++++|+++||+|+++++..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 4556789999999999999999999865
No 293
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=48.83 E-value=49 Score=28.49 Aligned_cols=39 Identities=8% Similarity=0.035 Sum_probs=28.1
Q ss_pred eeEEEEeCCCCCCCCCChHHH-HHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMER-HASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~-~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|||++|+.+ +..++... .+...++.+.+.|++|+++...
T Consensus 1 mkIl~I~GS----pr~~S~t~~l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 1 MRVITLAGS----PRFPSRSSALLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred CEEEEEEcC----CCCCChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 799999876 34455444 4556667777889999988755
No 294
>PRK00170 azoreductase; Reviewed
Probab=48.13 E-value=56 Score=28.18 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=29.1
Q ss_pred ceeEEEEeCCCCCCCCCC-hHH-HHHHHHHHHHHhC--CcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAAPG-GME-RHASTLYHALAAR--GHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~g-G~~-~~~~~l~~~L~~~--G~~V~v~~~~~ 123 (465)
+|||++|..+ +... |.. ..+..+.+.|.+. |++|+++....
T Consensus 1 Mmkil~i~gS----pr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~ 45 (201)
T PRK00170 1 MSKVLVIKSS----ILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAA 45 (201)
T ss_pred CCeEEEEecC----CCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 3799999876 2333 444 4566778888887 89998887654
No 295
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=47.85 E-value=1.3e+02 Score=29.84 Aligned_cols=100 Identities=11% Similarity=0.149 Sum_probs=59.7
Q ss_pred Eeeccc-cccCHHHHHHH-HHHhhhcCCCeEEEEEeCCcchhH--HH-------------Hhc-----------------
Q 044542 292 VAGRLV-RDKGHPLLYEA-FSSITRDHPGVYLLVAGTGPWGRR--YA-------------ELG----------------- 337 (465)
Q Consensus 292 ~~Grl~-~~Kg~~~ll~a-~~~l~~~~~~~~l~ivG~g~~~~~--~~-------------~l~----------------- 337 (465)
..|... ...|-+.++.+ +..|++..|++.+++....|.... +. +..
T Consensus 5 i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 84 (426)
T PRK10017 5 ILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRY 84 (426)
T ss_pred EEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHHHhhh
Confidence 455543 47888888876 567888889999999987655432 00 000
Q ss_pred ------CCeEEcCCC-------ChhHHHHHHHhcCeEEecc--cCCCCCcHH----HHHHHHcCCeEEecCCC
Q 044542 338 ------QNVKVLGAL-------EAHQLSEFYNALDVFVNPT--LRPQGLDLT----LIEAMHCGRTVLTPNYP 391 (465)
Q Consensus 338 ------~~V~~~g~v-------~~~~~~~~~~~aDv~v~ps--~~~eg~~~~----~~EAma~G~PvI~s~~g 391 (465)
.+|..-|.. ...++...++.||++|... ...+-+|.. ++-|..+|+|++....+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqs 157 (426)
T PRK10017 85 QHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHS 157 (426)
T ss_pred hHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCc
Confidence 011111110 1235667899999999843 222323321 45678899999976543
No 296
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=46.97 E-value=2e+02 Score=25.17 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=73.6
Q ss_pred eeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHH-----------HHhc----CCeEEcCCCChhHHHHHHHh
Q 044542 293 AGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRY-----------AELG----QNVKVLGALEAHQLSEFYNA 357 (465)
Q Consensus 293 ~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~-----------~~l~----~~V~~~g~v~~~~~~~~~~~ 357 (465)
+|-....-+.+.+-+||.-|.+. ++..|+-+|.|.+.++. +.|. -....+|.-++.=..+.+++
T Consensus 115 iglape~F~y~~ln~AFrvL~e~-~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~ 193 (262)
T KOG3040|consen 115 IGLAPEGFSYQRLNRAFRVLLEM-KKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQA 193 (262)
T ss_pred EecCcccccHHHHHHHHHHHHcC-CCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHh
Confidence 45555566777888999988765 55678888887654332 2222 45677777655555555555
Q ss_pred cCeEEeccc---CCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC--CHHHHHHHHHHHHhC
Q 044542 358 LDVFVNPTL---RPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP--NVKSFVEALELVIRD 424 (465)
Q Consensus 358 aDv~v~ps~---~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~--d~~~la~~i~~ll~~ 424 (465)
-- +-|.. .++..---+.-|++||.--|--++|-.+. .|. .-.-.++ ..+.+++++..++++
T Consensus 194 ~g--v~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rp---sDe-~k~~~~p~~~~d~f~~AVd~I~q~ 259 (262)
T KOG3040|consen 194 LG--VDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRP---SDE-EKPPVPPDLTADNFADAVDLIIQN 259 (262)
T ss_pred cC--CChHHheEEccccccchhhHhhhcceeEEeeccccCC---ccc-ccCCCCcchhhhhHHHHHHHHHhh
Confidence 42 11110 12222234556889998877777776552 111 1112223 678899999888876
No 297
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=46.81 E-value=54 Score=30.59 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=47.8
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCC--cc---------cCCcceEEEeecCCC-
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHN--DV---------HQGNLHVHFAANDHG- 146 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~~---------~~~~~~v~~~~~~~~- 146 (465)
+|||+|+... .+.....++|.+.||+|.-+...++..... ++ ...+..+.-......
T Consensus 1 ~mkivF~GTp-----------~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~ 69 (307)
T COG0223 1 MMRIVFFGTP-----------EFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDP 69 (307)
T ss_pred CcEEEEEcCc-----------hhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcH
Confidence 4899998652 123445577777889988777766544333 11 111111111111111
Q ss_pred -ccccCCCCCCcEEEecCCc--hhHHhhhcCCc-EEEEecc
Q 044542 147 -SVNLNNDGAFDYVHTESVS--LPHWRAKMVPN-VAVTWHG 183 (465)
Q Consensus 147 -~~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~-~v~~~h~ 183 (465)
.....+..+||++++-.++ ++.-+. .+|+ -.+.+|.
T Consensus 70 e~~~~l~~l~~D~ivvvayG~ilp~~iL-~~~~~G~iNvH~ 109 (307)
T COG0223 70 EFLEELAALDPDLIVVVAYGQILPKEIL-DLPPYGCINLHP 109 (307)
T ss_pred HHHHHHhccCCCEEEEEehhhhCCHHHH-hcCcCCeEEecC
Confidence 1112266789999987663 222222 2332 3677775
No 298
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=46.71 E-value=2.2e+02 Score=26.20 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=57.3
Q ss_pred hHHHHHHHhcCeEEecccCCCCCcHHHHHHHHc-CCeEEecCCCCcceeee-e---------------eCCceEEeCC-C
Q 044542 349 HQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHC-GRTVLTPNYPSIVRTVV-V---------------NEELGYTFSP-N 410 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~-G~PvI~s~~gg~~~e~v-~---------------~~~~G~l~~~-d 410 (465)
..-..-++.||++|.-...-|+|-.+++++... +.++|... .++. .+- . ....-+..++ +
T Consensus 44 p~d~~~l~~Adliv~~G~~~e~w~~k~~~~~~~~~~~~v~~~-~~i~-~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~ 121 (282)
T cd01017 44 PKDIARIADADVFVYNGLGMETWAEKVLKSLQNKKLKVVEAS-KGIK-LLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVL 121 (282)
T ss_pred HHHHHHHHhCCEEEEcCcchHHHHHHHHHhcccCCceEEECC-CCcc-ccccccccccccccccccCCCCCCccccCHHH
Confidence 344567788898887543235555666666532 23444321 1221 000 0 0122345555 6
Q ss_pred HHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 411 VKSFVEALELVIRD-GPKVLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 411 ~~~la~~i~~ll~~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
...+++.|.+.+.. .|+......+++.++..+ ++..-+++.+.+..+
T Consensus 122 ~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~~~~~ 169 (282)
T cd01017 122 AIQQVENIKDALIKLDPDNKEYYEKNAAAYAKK---LEALDQEYRAKLAKA 169 (282)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHhcc
Confidence 67777777766652 266666666777666555 455556666655543
No 299
>PRK13761 hypothetical protein; Provisional
Probab=46.34 E-value=1.4e+02 Score=26.38 Aligned_cols=92 Identities=18% Similarity=0.190 Sum_probs=52.8
Q ss_pred HHhcCeEEecccCCCCCcHHHHHHH-HcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHH
Q 044542 355 YNALDVFVNPTLRPQGLDLTLIEAM-HCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKG 433 (465)
Q Consensus 355 ~~~aDv~v~ps~~~eg~~~~~~EAm-a~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~ 433 (465)
+-.||++++|-. +| -=.||+ .+|+-||+-|...+.. . .....--+ ++.+..++-.+... -..++...
T Consensus 148 Iy~ADVVLVPLE--DG---DR~EaL~~mGK~VI~IDLNPLSR-T-ar~A~itI----VDni~RA~p~m~~~-~~elk~~~ 215 (248)
T PRK13761 148 IYSADVVLVPLE--DG---DRTEALVKMGKTVIAIDLNPLSR-T-ARTATITI----VDNITRAVPNMTEY-ARELKKKD 215 (248)
T ss_pred ceeccEEEecCC--CC---cHHHHHHHcCCeEEEEeCCCccc-c-cccCceee----ehhHHHHHHHHHHH-HHHHhcCC
Confidence 346999999974 34 345776 6899999998766642 1 11111112 34556666555544 23333333
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHH
Q 044542 434 LACKEHALSMFTATKMASAYERFFL 458 (465)
Q Consensus 434 ~~~~~~~~~~fs~~~~~~~~~~~~~ 458 (465)
....+.+.+.|+-++....-++.+.
T Consensus 216 ~~el~~iv~~~dN~~~L~~al~~I~ 240 (248)
T PRK13761 216 REELEEIVENYDNKKNLSEALKEIR 240 (248)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444555566877776666555544
No 300
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=46.30 E-value=28 Score=30.28 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=27.2
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKP 127 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 127 (465)
+|+|+++... ..| ..|++.|.+.||+|.+-+.+.....
T Consensus 1 m~~~~i~GtG-----niG------~alA~~~a~ag~eV~igs~r~~~~~ 38 (211)
T COG2085 1 MMIIAIIGTG-----NIG------SALALRLAKAGHEVIIGSSRGPKAL 38 (211)
T ss_pred CcEEEEeccC-----hHH------HHHHHHHHhCCCeEEEecCCChhHH
Confidence 3677776542 333 3689999999999999987765443
No 301
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=46.18 E-value=35 Score=28.36 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHh-cCeEEeccc-----CCCCCcHHHHHHHHcCCeEEec
Q 044542 351 LSEFYNA-LDVFVNPTL-----RPQGLDLTLIEAMHCGRTVLTP 388 (465)
Q Consensus 351 ~~~~~~~-aDv~v~ps~-----~~eg~~~~~~EAma~G~PvI~s 388 (465)
+...+.. +|++|+.-. .+.|+--.+.||++.|+||++.
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
No 302
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=46.06 E-value=28 Score=32.21 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=26.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
|+||+. ||++..=...+.+|.+.||+|.|+-.-..
T Consensus 1 ~~iLVt----------GGAGYIGSHtv~~Ll~~G~~vvV~DNL~~ 35 (329)
T COG1087 1 MKVLVT----------GGAGYIGSHTVRQLLKTGHEVVVLDNLSN 35 (329)
T ss_pred CeEEEe----------cCcchhHHHHHHHHHHCCCeEEEEecCCC
Confidence 567765 56566666788999999999999975543
No 303
>PRK05569 flavodoxin; Provisional
Probab=45.98 E-value=67 Score=25.81 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=29.2
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
||+++-.+ ..|..+..+..+++.+.+.|.+|.++....
T Consensus 3 ki~iiY~S-----~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~ 40 (141)
T PRK05569 3 KVSIIYWS-----CGGNVEVLANTIADGAKEAGAEVTIKHVAD 40 (141)
T ss_pred eEEEEEEC-----CCCHHHHHHHHHHHHHHhCCCeEEEEECCc
Confidence 66666543 458888899999999999999988876543
No 304
>PRK10037 cell division protein; Provisional
Probab=45.69 E-value=41 Score=30.32 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=28.5
Q ss_pred eeEEEEeCCCCCCCCCChHH--HHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGME--RHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
|||+-+.+ ..||.+ ..+.+|+.+|+++|++|.++-.+..
T Consensus 1 ~~~iav~n------~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 1 MAILGLQG------VRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred CcEEEEec------CCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 56655554 345555 4578999999999999999976653
No 305
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=45.42 E-value=1.3e+02 Score=26.35 Aligned_cols=90 Identities=21% Similarity=0.209 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHhhhcCCCeEEEEEeCC--cchh-------HHHHh-cCCeEEcCCCChhHHHHHHHhcCeEEeccc----
Q 044542 301 GHPLLYEAFSSITRDHPGVYLLVAGTG--PWGR-------RYAEL-GQNVKVLGALEAHQLSEFYNALDVFVNPTL---- 366 (465)
Q Consensus 301 g~~~ll~a~~~l~~~~~~~~l~ivG~g--~~~~-------~~~~l-~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~---- 366 (465)
+.+.+.+.+..+.+ ++.++.++... ...+ .++++ +-.+..+...+.++..+.+..||++++|.-
T Consensus 16 ~~~~l~~~l~~~~~--~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~ 93 (212)
T cd03146 16 ALPAIDDLLLSLTK--ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFN 93 (212)
T ss_pred chHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHH
Confidence 44555555555532 34567777643 2222 23445 433333333334677889999999999741
Q ss_pred -----CCCCCcHHHHHHHHcCCeEEecCCCC
Q 044542 367 -----RPQGLDLTLIEAMHCGRTVLTPNYPS 392 (465)
Q Consensus 367 -----~~eg~~~~~~EAma~G~PvI~s~~gg 392 (465)
..-++.-.+-|+...|+|++.+..|.
T Consensus 94 ~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 94 LLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred HHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 11133445566677899999877653
No 306
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=45.14 E-value=60 Score=25.27 Aligned_cols=41 Identities=10% Similarity=-0.020 Sum_probs=29.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHH--HHHHHHHHhCCcEEEEEeCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHA--STLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~--~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
|||+.|+.. ..|-+..++ ..|.++-++.||++.|=+.....
T Consensus 3 mkivaVtac-----p~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~~g 45 (114)
T PRK10427 3 AYLVAVTAC-----VSGVAHTYMAAERLEKLCQLEKWGVKIETQGALG 45 (114)
T ss_pred ceEEEEeeC-----CCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcC
Confidence 899999875 335555554 56667777889999998876643
No 307
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=45.13 E-value=52 Score=29.59 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=29.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
||++.|..- .+.-|..+.+.+|+.+|++.|..|.++-..+.
T Consensus 1 M~~iai~s~----kGGvG~TTltAnLA~aL~~~G~~VlaID~dpq 41 (243)
T PF06564_consen 1 MKVIAIVSP----KGGVGKTTLTANLAWALARLGESVLAIDLDPQ 41 (243)
T ss_pred CcEEEEecC----CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcH
Confidence 555544431 13345566788999999999999999987654
No 308
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=45.02 E-value=2.1e+02 Score=24.98 Aligned_cols=41 Identities=7% Similarity=0.034 Sum_probs=24.5
Q ss_pred hhHHHHHHHh--cCeEEecccCCCCCcHHHHHHHHcCCeEEecC
Q 044542 348 AHQLSEFYNA--LDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPN 389 (465)
Q Consensus 348 ~~~~~~~~~~--aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~ 389 (465)
.+++.++++. .|+++..... ....-..-.+...|+..|..-
T Consensus 135 ~~~l~~li~~~~iD~ViIa~P~-~~~~~i~~~l~~~Gi~~il~~ 177 (213)
T PRK05472 135 IDELEEVVKENDIEIGILTVPA-EAAQEVADRLVEAGIKGILNF 177 (213)
T ss_pred HHHHHHHHHHCCCCEEEEeCCc-hhHHHHHHHHHHcCCCEEeec
Confidence 3678888866 8888875432 222223444667997665543
No 309
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=44.88 E-value=41 Score=27.98 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=23.7
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
+|||.+|.. +..-..+++.|.+.||+|+++...
T Consensus 1 m~~Ig~IGl-----------G~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 1 MMKIGFIGL-----------GNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp -BEEEEE-------------SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred CCEEEEEch-----------HHHHHHHHHHHHhcCCeEEeeccc
Confidence 478999853 234567899999999999988644
No 310
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.33 E-value=1.7e+02 Score=25.77 Aligned_cols=77 Identities=22% Similarity=0.204 Sum_probs=47.1
Q ss_pred HHHHHHhhhcCCCeEEEEEeCCcchhHH---HHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcC
Q 044542 306 YEAFSSITRDHPGVYLLVAGTGPWGRRY---AELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCG 382 (465)
Q Consensus 306 l~a~~~l~~~~~~~~l~ivG~g~~~~~~---~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G 382 (465)
+++++.+++++|++ ++-+|.--..+.. .+.+.+.......++ ++.+.-...++.++|... .|.-+.+|+.+|
T Consensus 54 ~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~-~vi~~a~~~~i~~iPG~~---TptEi~~a~~~G 128 (212)
T PRK05718 54 LEAIRLIAKEVPEA-LIGAGTVLNPEQLAQAIEAGAQFIVSPGLTP-PLLKAAQEGPIPLIPGVS---TPSELMLGMELG 128 (212)
T ss_pred HHHHHHHHHHCCCC-EEEEeeccCHHHHHHHHHcCCCEEECCCCCH-HHHHHHHHcCCCEeCCCC---CHHHHHHHHHCC
Confidence 56667777777762 3333432222322 334466666666654 777777788888887643 344578888888
Q ss_pred CeEEe
Q 044542 383 RTVLT 387 (465)
Q Consensus 383 ~PvI~ 387 (465)
..+|-
T Consensus 129 a~~vK 133 (212)
T PRK05718 129 LRTFK 133 (212)
T ss_pred CCEEE
Confidence 87773
No 311
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=44.22 E-value=51 Score=30.16 Aligned_cols=49 Identities=16% Similarity=0.033 Sum_probs=34.4
Q ss_pred cccCCCCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 71 LCFGPTFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 71 l~~~~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
+.+.+..+..|++.|+..- ...|-...+.+|+.+|++.|.+|.++-.+.
T Consensus 94 l~~~~~~~~~~vi~vts~~----~g~Gktt~a~nLA~~la~~g~~VllID~D~ 142 (274)
T TIGR03029 94 LMLRWFSEGRKALAVVSAK----SGEGCSYIAANLAIVFSQLGEKTLLIDANL 142 (274)
T ss_pred hhhhccCCCCeEEEEECCC----CCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 3333334445666666542 446778889999999999999999987653
No 312
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=43.78 E-value=2.2e+02 Score=26.66 Aligned_cols=108 Identities=12% Similarity=0.051 Sum_probs=64.2
Q ss_pred HHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCC-eEEecCCCCcce-eeee-----eCCceEEeCC-CHHHHHHHHHHH
Q 044542 350 QLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGR-TVLTPNYPSIVR-TVVV-----NEELGYTFSP-NVKSFVEALELV 421 (465)
Q Consensus 350 ~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~-PvI~s~~gg~~~-e~v~-----~~~~G~l~~~-d~~~la~~i~~l 421 (465)
.=..-++.||+++.-...-|+|-..+++.+.... ++|... .++.- ..-. ........++ +...+++.|.+.
T Consensus 74 ~di~~i~~ADliv~nG~~le~w~~k~~~~~~~~~~~~i~~s-~~i~~~~~~~~~~~g~~dpH~Wldp~na~~~v~~I~~~ 152 (303)
T COG0803 74 SDIAKLRKADLIVYNGLGLEPWLEKLLESADKKKVLVIEVS-DGIELLPLPGEEEEGVNDPHVWLDPKNAKIYAENIADA 152 (303)
T ss_pred HHHHHHHhCCEEEEcCCChHHHHHHHHHhcccCCceEEEcc-CCccccCCCCccccCCCCCCeecCHHHHHHHHHHHHHH
Confidence 3446678899998866544666677777665554 344322 12210 1111 1134556666 777777777665
Q ss_pred Hh-CChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhc
Q 044542 422 IR-DGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRMK 461 (465)
Q Consensus 422 l~-~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 461 (465)
+. ..|+..+...+++.++.++ ++...+.+...+..+.
T Consensus 153 L~~~dP~~~~~y~~N~~~y~~k---L~~l~~~~~~~~~~~~ 190 (303)
T COG0803 153 LVELDPENKETYEKNAEAYLKK---LNKLDEEAKAKLSKIP 190 (303)
T ss_pred HHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCC
Confidence 55 1277778888888888766 5666666666665544
No 313
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=43.62 E-value=2.2e+02 Score=24.73 Aligned_cols=129 Identities=9% Similarity=0.024 Sum_probs=64.6
Q ss_pred HHHHhhhcCCCeEEEEEeCCcchhHHHHhc--CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeE
Q 044542 308 AFSSITRDHPGVYLLVAGTGPWGRRYAELG--QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTV 385 (465)
Q Consensus 308 a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~Pv 385 (465)
.+..|.+. ..+++++... ..+.++++. ..+.+.... -....+..+|+++..+.. +.....+.+....|.+|
T Consensus 25 ka~~Ll~~--ga~V~VIs~~-~~~~l~~l~~~~~i~~~~~~---~~~~~l~~adlViaaT~d-~elN~~i~~~a~~~~lv 97 (202)
T PRK06718 25 RAITLLKY--GAHIVVISPE-LTENLVKLVEEGKIRWKQKE---FEPSDIVDAFLVIAATND-PRVNEQVKEDLPENALF 97 (202)
T ss_pred HHHHHHHC--CCeEEEEcCC-CCHHHHHHHhCCCEEEEecC---CChhhcCCceEEEEcCCC-HHHHHHHHHHHHhCCcE
Confidence 34444443 3566777643 223344443 346654332 123456789998887643 44455666666778888
Q ss_pred EecCCCCcce----eeeeeCCceEEeCC--C----HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhh
Q 044542 386 LTPNYPSIVR----TVVVNEELGYTFSP--N----VKSFVEALELVIRDGPKVLQRKGLACKEHALSM 443 (465)
Q Consensus 386 I~s~~gg~~~----e~v~~~~~G~l~~~--d----~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 443 (465)
-+.|.+...+ .++..+..-+-+.. . ...+.+.|+.++...-+.+-+.....|+.+++.
T Consensus 98 n~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 98 NVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALYDESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred EECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHh
Confidence 8877655441 23333433333322 2 234444455444221122333334555555554
No 314
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=43.41 E-value=50 Score=29.82 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=26.7
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTA 121 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 121 (465)
||++++.. .+.||-. .-+++.|.++|++|.|+..
T Consensus 62 ~V~VlcG~----GNNGGDG---lv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 62 RVLLVCGP----GNNGGDG---LVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred eEEEEECC----CCCchhH---HHHHHHHHHCCCeEEEEEc
Confidence 79998874 4667764 4577889999999999983
No 315
>PRK08105 flavodoxin; Provisional
Probab=43.32 E-value=52 Score=26.97 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEeC
Q 044542 94 APGGMERHASTLYHALAARGHEIHVFTA 121 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 121 (465)
..|-.+..+..+++.|.+.|++|.+...
T Consensus 11 ~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 11 VYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred CchHHHHHHHHHHHHHHhCCCceEEech
Confidence 5688899999999999999999988764
No 316
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=42.95 E-value=2e+02 Score=24.63 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=47.8
Q ss_pred EEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcc-hhHHHHh-c--CCeEEcCCCChhHHHHHHHhc--CeE
Q 044542 288 LVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPW-GRRYAEL-G--QNVKVLGALEAHQLSEFYNAL--DVF 361 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~~~~l-~--~~V~~~g~v~~~~~~~~~~~a--Dv~ 361 (465)
.+.+.....++- ..+...+.++++++|+.++++....+. .+..++. . ..+.+.+.=....+..+++.. |++
T Consensus 23 ~iWiHa~SvGE~---~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~ 99 (186)
T PF04413_consen 23 LIWIHAASVGEV---NAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLL 99 (186)
T ss_dssp -EEEE-SSHHHH---HHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEE
T ss_pred cEEEEECCHHHH---HHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEE
Confidence 555566665553 345566677777789999888876433 3334443 2 334443321224466677664 888
Q ss_pred EecccCCCCCcHHHHHHHHcCCeEEecC
Q 044542 362 VNPTLRPQGLDLTLIEAMHCGRTVLTPN 389 (465)
Q Consensus 362 v~ps~~~eg~~~~~~EAma~G~PvI~s~ 389 (465)
|.-- .|=+|+-+.+|-..|+|++.-+
T Consensus 100 i~~E--tElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 100 IWVE--TELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp EEES------HHHHHH-----S-EEEEE
T ss_pred EEEc--cccCHHHHHHHhhcCCCEEEEe
Confidence 8743 4889999999999999999765
No 317
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=42.92 E-value=1.5e+02 Score=26.79 Aligned_cols=92 Identities=12% Similarity=0.085 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHhhhcCCCeEEEEEeC--Ccch-------hHHHHhc-CCeEEcCCC-----ChhHHHHHHHhcCeEEecc
Q 044542 301 GHPLLYEAFSSITRDHPGVYLLVAGT--GPWG-------RRYAELG-QNVKVLGAL-----EAHQLSEFYNALDVFVNPT 365 (465)
Q Consensus 301 g~~~ll~a~~~l~~~~~~~~l~ivG~--g~~~-------~~~~~l~-~~V~~~g~v-----~~~~~~~~~~~aDv~v~ps 365 (465)
+-..+.+.+-++... ++.++.++.. ++.. +.+++++ ..|..+.-- +.++..+.+..||++++..
T Consensus 12 ~~~~i~~~~~~lag~-~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 12 GDREILREFVSRAGG-EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTG 90 (250)
T ss_pred ChHHHHHHHHHHhCC-CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeC
Confidence 444466666555433 3456666642 2222 2334455 445554432 2356778899999998852
Q ss_pred cC-------CCCCc--HHHHHHHHcCCeEEecCCCCc
Q 044542 366 LR-------PQGLD--LTLIEAMHCGRTVLTPNYPSI 393 (465)
Q Consensus 366 ~~-------~eg~~--~~~~EAma~G~PvI~s~~gg~ 393 (465)
-. ..+.+ -.+-|+...|+|++.+..|.+
T Consensus 91 Gnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 91 GDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 10 02233 456788999999998887654
No 318
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=42.51 E-value=59 Score=25.03 Aligned_cols=42 Identities=26% Similarity=0.250 Sum_probs=29.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCC---cEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARG---HEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G---~~V~v~~~~~~ 124 (465)
|||+++...-| ...........++......| ++|.|+...+.
T Consensus 1 k~v~~i~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~g 45 (122)
T PF02635_consen 1 KKVFFIVTSGP---YDDERAKIALRLANAAAAMGDYGHDVVVFFHGDG 45 (122)
T ss_dssp EEEEEEE-S-T---TTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGG
T ss_pred CEEEEEecCCC---CCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchH
Confidence 68888887643 22333677888888889999 99999987764
No 319
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=42.17 E-value=2.3e+02 Score=24.64 Aligned_cols=129 Identities=12% Similarity=0.097 Sum_probs=66.5
Q ss_pred HHHhhhcCCCeEEEEEeCCcchhHHHHhc--CCeEEcC-CCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeE
Q 044542 309 FSSITRDHPGVYLLVAGTGPWGRRYAELG--QNVKVLG-ALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTV 385 (465)
Q Consensus 309 ~~~l~~~~~~~~l~ivG~g~~~~~~~~l~--~~V~~~g-~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~Pv 385 (465)
+..|.+. ..++.++..... +.++++. .+|.+.. ... ...+..+|+++..+-..+----...+|-..|+||
T Consensus 25 ~~~Ll~~--ga~VtVvsp~~~-~~l~~l~~~~~i~~~~~~~~----~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 25 ARLLLKA--GAQLRVIAEELE-SELTLLAEQGGITWLARCFD----ADILEGAFLVIAATDDEELNRRVAHAARARGVPV 97 (205)
T ss_pred HHHHHHC--CCEEEEEcCCCC-HHHHHHHHcCCEEEEeCCCC----HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEE
Confidence 4444443 456667664332 3444443 3676644 332 3346788887775433122223555666889999
Q ss_pred EecCCCCcce----eeeeeCCceEEeC-----C-CHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhC
Q 044542 386 LTPNYPSIVR----TVVVNEELGYTFS-----P-NVKSFVEALELVIRDGPKVLQRKGLACKEHALSMF 444 (465)
Q Consensus 386 I~s~~gg~~~----e~v~~~~~G~l~~-----~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~f 444 (465)
-+.+.+...+ .++..+..-+-+. | =...+.+.|++++...-+.+.++....|+.+.+..
T Consensus 98 n~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~~~~~~~~~~R~~~k~~~ 166 (205)
T TIGR01470 98 NVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLPPSLGDLATLAATWRDAVKKRL 166 (205)
T ss_pred EECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhC
Confidence 7776555441 2333343333332 1 23555566666664323344455556666666543
No 320
>PRK09004 FMN-binding protein MioC; Provisional
Probab=42.11 E-value=57 Score=26.64 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=27.6
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEe
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFT 120 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 120 (465)
||.|+-. ...|-.+..+..+++.+.+.|++|.++.
T Consensus 3 ~i~I~yg-----S~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 3 DITLISG-----STLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred eEEEEEE-----cCchHHHHHHHHHHHHHHHcCCceEEec
Confidence 5665533 3568889999999999999999998863
No 321
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=42.10 E-value=90 Score=26.20 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=27.7
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
..+|++++.. .+.||- -..+++.|.+.|++|+++...+..
T Consensus 25 ~~~v~il~G~----GnNGgD---gl~~AR~L~~~G~~V~v~~~~~~~ 64 (169)
T PF03853_consen 25 GPRVLILCGP----GNNGGD---GLVAARHLANRGYNVTVYLVGPPE 64 (169)
T ss_dssp T-EEEEEE-S----SHHHHH---HHHHHHHHHHTTCEEEEEEEESSS
T ss_pred CCeEEEEECC----CCChHH---HHHHHHHHHHCCCeEEEEEEeccc
Confidence 4489999864 234443 567899999999999996665433
No 322
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=42.09 E-value=72 Score=31.30 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=31.5
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
..+|+|+.|++. .+.-|-...+.+|+.+|+..|+.|.++-.++.
T Consensus 118 ~~~~~vIav~n~----KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 118 SEHLQVIAVTNF----KGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred CCCceEEEEEcC----CCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 346787777653 22234445688999999999999999876654
No 323
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.85 E-value=2.9e+02 Score=25.55 Aligned_cols=107 Identities=10% Similarity=0.037 Sum_probs=57.8
Q ss_pred hHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCC-Ccceeee----e---------------e-----CCc
Q 044542 349 HQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYP-SIVRTVV----V---------------N-----EEL 403 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~g-g~~~e~v----~---------------~-----~~~ 403 (465)
..-...++.||++|.-....|++--++++... +.++|....+ +.. ... . + ...
T Consensus 44 p~d~~~l~~Adliv~~G~~le~~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~dP 121 (286)
T cd01019 44 PSDARKLQEADLVVWIGPDLEAFLDKVLQGRK-KGKVLTLAKLIDLK-TLEDGASHGDHEHDHEHAHGEHDGHEEGGLDP 121 (286)
T ss_pred HHHHHHHHhCCEEEEeCCCchHHHHHHHHhcC-cCceEecccCCccc-ccccccccccccccccccccccCCCCCCCCCC
Confidence 34456677799988865433666566666542 3455533211 110 000 0 0 012
Q ss_pred eEEeCC-CHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 404 GYTFSP-NVKSFVEALELVIRD-GPKVLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 404 G~l~~~-d~~~la~~i~~ll~~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
-+..++ +...++++|.+-+.. .|+..+...+++.++.++ ++.+-+++.+.+..+
T Consensus 122 HiWldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~~~~~ 177 (286)
T cd01019 122 HLWLSPENAAEVAQAVAEKLSALDPDNAATYAANLEAFNAR---LAELDATIKERLAPV 177 (286)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHH---HHHHHHHHHHHhhcc
Confidence 244555 666777777666542 367767777777777665 455555665555543
No 324
>PRK06444 prephenate dehydrogenase; Provisional
Probab=41.76 E-value=28 Score=30.19 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=20.7
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEE
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIH 117 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~ 117 (465)
|||++|.. .|++++ .+++.|.+.||+|+
T Consensus 1 ~~~~iiG~-------~G~mG~---~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGK-------NGRLGR---VLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEec-------CCcHHH---HHHHHHHhCCCEEE
Confidence 68998853 366655 57788888999986
No 325
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=41.63 E-value=53 Score=28.14 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=27.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHh-CCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAA-RGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~ 124 (465)
+||++.... |.+.....++++.|.+ .|++|+++.+...
T Consensus 2 k~IllgVTG-------siaa~ka~~l~~~L~k~~g~~V~vv~T~~A 40 (185)
T PRK06029 2 KRLIVGISG-------ASGAIYGVRLLQVLRDVGEIETHLVISQAA 40 (185)
T ss_pred CEEEEEEEC-------HHHHHHHHHHHHHHHhhcCCeEEEEECHHH
Confidence 467665542 3345568899999999 5999999988753
No 326
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=41.60 E-value=1.1e+02 Score=26.44 Aligned_cols=95 Identities=8% Similarity=0.006 Sum_probs=47.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCc--EEEEEeCCCCCCCCCc-ccCCcceEEEee-cCCC--------c
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGH--EIHVFTAPSDRKPHND-VHQGNLHVHFAA-NDHG--------S 147 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~--------~ 147 (465)
|||+++... .+..+..+.+++.+.+. +|.++.+...+....+ ....+..+.... .... .
T Consensus 1 ~riail~sg---------~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~ 71 (190)
T TIGR00639 1 KRIVVLISG---------NGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAI 71 (190)
T ss_pred CeEEEEEcC---------CChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHH
Confidence 689988752 23456788888887655 5655444443222111 122222232211 1100 0
Q ss_pred cccCCCCCCcEEEecCCc--hhHHhhhcCCcEEEEecc
Q 044542 148 VNLNNDGAFDYVHTESVS--LPHWRAKMVPNVAVTWHG 183 (465)
Q Consensus 148 ~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 183 (465)
....+..++|++++.++. +...+....+.-++.+|.
T Consensus 72 ~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHp 109 (190)
T TIGR00639 72 IEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHP 109 (190)
T ss_pred HHHHHhcCCCEEEEeCcchhCCHHHHhhccCCEEEEeC
Confidence 111257789999887652 222222222325777885
No 327
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=41.45 E-value=1.5e+02 Score=26.24 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=27.0
Q ss_pred CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEec
Q 044542 338 QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTP 388 (465)
Q Consensus 338 ~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s 388 (465)
+.+.|...... |++|.-... |. -.+++||.-+++|+|+-
T Consensus 164 d~~~f~~t~~~----------D~vvvln~~-e~-~sAilEA~K~~IPTIgI 202 (251)
T KOG0832|consen 164 DALCFLPTLTP----------DLVVVLNPE-EN-HSAILEAAKMAIPTIGI 202 (251)
T ss_pred cceeecccCCc----------ceeEecCcc-cc-cHHHHHHHHhCCCeEEE
Confidence 56666655532 777765432 33 46999999999999973
No 328
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=40.65 E-value=70 Score=27.90 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=34.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
|||+.|+..+ ...|-....+...++.+.+.|.||.++.....
T Consensus 1 mki~~I~gs~---r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~ 42 (207)
T COG0655 1 MKILGINGSP---RSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEK 42 (207)
T ss_pred CeeeEEEecC---CCCCcHHHHHHHHHHHHHHcCCEEEEEEecCC
Confidence 6778777653 23677888899999999999999999988764
No 329
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=40.57 E-value=64 Score=30.20 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=28.7
Q ss_pred eeEEEEeCCCCCCCCCChHHH--HHHHHHHHHHhCCcEEEEEeCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMER--HASTLYHALAARGHEIHVFTAPSDRK 126 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~--~~~~l~~~L~~~G~~V~v~~~~~~~~ 126 (465)
||+++++.. ||.++ ....++-+++++|+.|.+++.++...
T Consensus 1 ~r~~~~~GK-------GGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGK-------GGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEES-------TTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecC-------CCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 789999753 55554 55568888899999999999887543
No 330
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=40.23 E-value=47 Score=31.74 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=26.1
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
++..|||++... .|.+ -..+++.|.++|++|.++...
T Consensus 7 ~~~~~~vLVtG~-------~GfI---G~~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 7 ESATGTYCVTGA-------TGYI---GSWLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred ccCCCEEEEECC-------CcHH---HHHHHHHHHHCCCEEEEEeCC
Confidence 456789888732 2444 457888899999999887543
No 331
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.21 E-value=53 Score=30.75 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=26.3
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.+|||+++.. +..-..+++.|.+.||+|.++....
T Consensus 3 ~~m~I~iiG~-----------G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGA-----------GAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECc-----------cHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999843 2234578999999999999887653
No 332
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=40.19 E-value=49 Score=29.28 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 96 GGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
||.+ ..+++.|.++|++|.++....
T Consensus 15 g~iG---~~l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 15 RGIG---RAIALRLAADGAKVVIYDSNE 39 (246)
T ss_pred cHHH---HHHHHHHHHCCCEEEEEeCCh
Confidence 5554 468888889999987766543
No 333
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=39.97 E-value=24 Score=23.36 Aligned_cols=16 Identities=19% Similarity=0.193 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCeEEec
Q 044542 373 LTLIEAMHCGRTVLTP 388 (465)
Q Consensus 373 ~~~~EAma~G~PvI~s 388 (465)
-.+.|++..|.||++-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4899999999999984
No 334
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=39.94 E-value=67 Score=27.77 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=30.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC-CcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAAR-GHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~ 123 (465)
|||+++-.+ ..|-.+..+..+++.+.+. |++|.++....
T Consensus 1 ~kilIiY~S-----~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~ 40 (197)
T TIGR01755 1 VKVLVLYYS-----MYGHIETMARAVAEGAREVDGAEVVVKRVPE 40 (197)
T ss_pred CeEEEEEeC-----CCCHHHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 578888764 4578888888889999875 99999887543
No 335
>PRK08309 short chain dehydrogenase; Provisional
Probab=39.89 E-value=54 Score=27.85 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCcEEEEEeCC
Q 044542 102 ASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 102 ~~~l~~~L~~~G~~V~v~~~~ 122 (465)
...+++.|.+.|++|.+.+..
T Consensus 12 gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 12 LKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred HHHHHHHHHHCcCEEEEEECC
Confidence 456899999999999988654
No 336
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=39.85 E-value=30 Score=33.62 Aligned_cols=39 Identities=10% Similarity=-0.039 Sum_probs=25.8
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEe
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFT 120 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 120 (465)
..++||++=... .-.|.+..+.....++.+.+.++.++-
T Consensus 92 ~~~~~IAVDaMG-----GD~aP~~iV~Ga~~Al~~~~l~iiLVG 130 (437)
T PRK13845 92 SDRIWVAVDGMG-----GDYAPGPILEGCLQAISRLPLNIKFVG 130 (437)
T ss_pred cCceEEEEEccC-----CCcChHHHHHHHHHHHHhCCCEEEEEe
Confidence 456788887653 334556778888888888765555543
No 337
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=39.84 E-value=84 Score=28.00 Aligned_cols=39 Identities=31% Similarity=0.472 Sum_probs=28.7
Q ss_pred eeEEEEeCCCCCCCCCChHH--HHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGME--RHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
|||..+.. ..||.+ +...+|+.+|+++|..|.++-.++.
T Consensus 1 M~iI~v~n------~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ 41 (231)
T PRK13849 1 MKLLTFCS------FKGGAGKTTALMGLCAALASDGKRVALFEADEN 41 (231)
T ss_pred CeEEEEEC------CCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 56555554 335555 5678999999999999999987764
No 338
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=39.73 E-value=32 Score=29.92 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=28.2
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
..++++ .|| ..|-..+..+|+++|.+.+|+|..++..
T Consensus 2 pLiIlT-GyP----gsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 2 PLIILT-GYP----GSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred ceEEEe-cCC----CCCchHHHHHHHHHHHHhhhhccccchh
Confidence 444444 454 2677899999999999999998887764
No 339
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=39.60 E-value=64 Score=31.53 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=29.1
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.+||++.... +.....+..+++.|.+.|++|.++.+..
T Consensus 6 ~k~IllgvTG-------siaa~k~~~lv~~L~~~g~~V~vv~T~~ 43 (399)
T PRK05579 6 GKRIVLGVSG-------GIAAYKALELVRRLRKAGADVRVVMTEA 43 (399)
T ss_pred CCeEEEEEeC-------HHHHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 4578877652 3344567889999999999999998765
No 340
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=39.44 E-value=63 Score=30.38 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=45.7
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCC-------C---c-ccCCcceEEEeecCC--C
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPH-------N---D-VHQGNLHVHFAANDH--G 146 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-------~---~-~~~~~~~v~~~~~~~--~ 146 (465)
|||+++... .+.....++|.+.||++..+...++.... . + ....+..+....... .
T Consensus 1 mkIvf~Gs~-----------~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~ 69 (313)
T TIGR00460 1 LRIVFFGTP-----------TFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLE 69 (313)
T ss_pred CEEEEECCC-----------HHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHH
Confidence 799998642 23456667778888988655543322111 0 0 011122222211111 1
Q ss_pred ccccCCCCCCcEEEecCCc--hhHHhhhcCCcEEEEecc
Q 044542 147 SVNLNNDGAFDYVHTESVS--LPHWRAKMVPNVAVTWHG 183 (465)
Q Consensus 147 ~~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 183 (465)
.+...+..+||++++..+. ++..+-...+.-++.+|.
T Consensus 70 ~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHp 108 (313)
T TIGR00460 70 ELPLVRELKPDVIVVVSFGKILPKEFLDLFPYGCINVHP 108 (313)
T ss_pred HHHHHHhhCCCEEEEccchhhCCHHHHhhccCCEEEecC
Confidence 1223367799999987652 222222222213778885
No 341
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=39.30 E-value=91 Score=29.00 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=29.8
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
.+|||.-|.. ...-|-.+.+.+|+-+|++.|++|.++-.+...
T Consensus 2 ~~~~~iai~~-----KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~ 44 (295)
T PRK13234 2 SKLRQIAFYG-----KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKA 44 (295)
T ss_pred CcceEEEEEC-----CCCccHHHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 4677665542 122344456789999999999999999766543
No 342
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=39.19 E-value=3.4e+02 Score=26.62 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=57.8
Q ss_pred EEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeC-CcchhHHHHh-cC--CeEEcCCCChhHHHHHHHh--cCeE
Q 044542 288 LVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGT-GPWGRRYAEL-GQ--NVKVLGALEAHQLSEFYNA--LDVF 361 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~~~~~~~~l-~~--~V~~~g~v~~~~~~~~~~~--aDv~ 361 (465)
.+.+..++..... .+...++.+.+.+|+.++++.-. ....+..++. ++ .+.+.+.-....+..+++. -|++
T Consensus 52 ~iW~Ha~s~Ge~~---~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v 128 (425)
T PRK05749 52 LIWFHAVSVGETR---AAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLV 128 (425)
T ss_pred eEEEEeCCHHHHH---HHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEE
Confidence 5555777776544 44555666666678877665532 2222333322 32 2344444334566677755 4888
Q ss_pred EecccCCCCCcHHHHHHHHcCCeEEecC
Q 044542 362 VNPTLRPQGLDLTLIEAMHCGRTVLTPN 389 (465)
Q Consensus 362 v~ps~~~eg~~~~~~EAma~G~PvI~s~ 389 (465)
+... .|-++..+..+-..|+|++..+
T Consensus 129 ~~~~--~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 129 IIME--TELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred EEEe--cchhHHHHHHHHHCCCCEEEEe
Confidence 7643 2667888888888999998764
No 343
>PLN02240 UDP-glucose 4-epimerase
Probab=38.92 E-value=43 Score=31.85 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=23.6
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeC
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTA 121 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 121 (465)
+..+||++.. ..|+.+ ..+++.|.++|++|.++..
T Consensus 3 ~~~~~vlItG-------atG~iG---~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTG-------GAGYIG---SHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCCEEEEEC-------CCChHH---HHHHHHHHHCCCEEEEEeC
Confidence 3345777653 235543 4678888889999988864
No 344
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=38.92 E-value=2.4e+02 Score=29.18 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=31.0
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
..++|||+++|.. ..|-.......+-+.|+++|.++.+-...-
T Consensus 503 ~~k~mKILvaCGs-----GiGTStmva~kIkk~Lke~GI~veV~~~~V 545 (602)
T PRK09548 503 GGKPVRILAVCGQ-----GQGSSMMMKMKIKKYLDKRGIPIIMDSCAV 545 (602)
T ss_pred cCcccEEEEECCC-----CchHHHHHHHHHHHHHHHcCCCeEEEEech
Confidence 3567899999974 455555566777888899999877655443
No 345
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=38.87 E-value=3e+02 Score=25.21 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCcEEEEEeecccc---------ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHH--H---hc-CCeEEcCCCChh
Q 044542 285 NVSLVMGVAGRLVR---------DKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYA--E---LG-QNVKVLGALEAH 349 (465)
Q Consensus 285 ~~~~~l~~~Grl~~---------~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~--~---l~-~~V~~~g~v~~~ 349 (465)
+.+++++.+|.... +++++.|-.++..+-+.-|+..|+++...-+--.+- + ++ ++|.=.|--=+.
T Consensus 88 ~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~nRViGsGcnLDs 167 (332)
T KOG1495|consen 88 NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKNRVIGSGCNLDS 167 (332)
T ss_pred CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCcccceeccCcCccH
Confidence 44477777775432 456667777777777777999999998753322221 2 22 666656643234
Q ss_pred HHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEec
Q 044542 350 QLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTP 388 (465)
Q Consensus 350 ~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s 388 (465)
.-..++-.-.+.+.|+.. +|+ .+-|--...+||-+.
T Consensus 168 aRFryLi~~~Lg~~pss~-hgw--IiGEHGdSsV~vWSg 203 (332)
T KOG1495|consen 168 ARFRYLIGNRLGVHPSSC-HGW--IIGEHGDSSVPVWSG 203 (332)
T ss_pred HHHHHHHHHHhCCCcccc-eEE--EeeccCCccceeccc
Confidence 445566566667777754 443 666666666777654
No 346
>PLN00198 anthocyanidin reductase; Provisional
Probab=38.73 E-value=65 Score=30.47 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCcEEEEEeCCC
Q 044542 101 HASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 101 ~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.=..+++.|.+.|++|.++....
T Consensus 21 IG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 21 LASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC
Confidence 44578899999999998776553
No 347
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=38.69 E-value=75 Score=28.29 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=31.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|+|+.++.. ...|-.+.+..+++.|.++|+.|-++-..
T Consensus 1 m~vi~ivG~-----~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-----KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-----CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 677777753 45788888999999999999999999653
No 348
>PHA02957 hypothetical protein; Provisional
Probab=38.60 E-value=40 Score=27.02 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhHHHHHhcCCCCCCCCCccCCCCCCcccccc
Q 044542 20 RYSTVLISALFFTSFYLFISPLRHVPEPGFLKGEGKRFIGDLR 62 (465)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (465)
.+.++++..++.+|+.+|+..-| |.+.+--.+.++...|.+
T Consensus 14 ~~kiif~ai~~~~~~~~lli~~t--~~~~sk~s~edneiddvp 54 (206)
T PHA02957 14 AFKIIFLAILLIIPLELLLICHT--CITASKLSREDNEIDDVP 54 (206)
T ss_pred chHHHHHHHHHHHHHHHHHhhhe--eeecccccccccccccCC
Confidence 34667778888899999988877 733322223344555543
No 349
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=38.53 E-value=1e+02 Score=27.22 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=28.9
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHH-HHHHHHHHHHhCCcEEEEEeCC
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMER-HASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~-~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
.+++|||++|+.+. ..|-..+ .+..+.+.+.+.|.+|+++...
T Consensus 23 ~~~~~kI~~I~GSl----R~~S~n~~la~~~~~~~~~~g~~v~~idl~ 66 (219)
T TIGR02690 23 KPHIPRILLLYGSL----RERSYSRLLAEEAARLLGCEGRETRIFDPP 66 (219)
T ss_pred CCCCCEEEEEECCC----CCcchHHHHHHHHHHHHhhcCCEEEEeCcc
Confidence 56679999999874 4444444 3444455555569999988754
No 350
>PRK09358 adenosine deaminase; Provisional
Probab=38.52 E-value=3.5e+02 Score=25.62 Aligned_cols=143 Identities=15% Similarity=0.061 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEEeCCcc---hhHHHHhc-CCeEEcCCCC-hhHHHHHHHhcCeEE--ecccCC-CC---
Q 044542 302 HPLLYEAFSSITRDHPGVYLLVAGTGPW---GRRYAELG-QNVKVLGALE-AHQLSEFYNALDVFV--NPTLRP-QG--- 370 (465)
Q Consensus 302 ~~~ll~a~~~l~~~~~~~~l~ivG~g~~---~~~~~~l~-~~V~~~g~v~-~~~~~~~~~~aDv~v--~ps~~~-eg--- 370 (465)
.+.+.++++..++.+-.+.+++...+.. ...++.++ +++-.-..+. .++..++++..++.| +|+... -+
T Consensus 181 ~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~l~~~~ 260 (340)
T PRK09358 181 PSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERIGHGVRAIEDPALMARLADRRIPLEVCPTSNVQTGAVP 260 (340)
T ss_pred HHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcccchhhhhccCHHHHHHHHHcCCeEEECCCccccccccC
Confidence 4556677777766555565665422211 12233344 3332222332 366888999988876 575320 01
Q ss_pred -C-cHHHHHHHHcCCeEE-ecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCHH
Q 044542 371 -L-DLTLIEAMHCGRTVL-TPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDGPKVLQRKGLACKEHALSMFTAT 447 (465)
Q Consensus 371 -~-~~~~~EAma~G~PvI-~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~ 447 (465)
+ ...+-+.+..|+||. +||.++.. + . + -.+++..+... ..-+++...++..++.+.. |-.+
T Consensus 261 ~~~~~pi~~l~~~Gv~v~lgTD~~~~~------~-~----~-l~~e~~~~~~~-~~l~~~el~~l~~nai~~s---f~~~ 324 (340)
T PRK09358 261 SLAEHPLKTLLDAGVRVTINTDDPLVF------G-T----T-LTEEYEALAEA-FGLSDEDLAQLARNALEAA---FLSE 324 (340)
T ss_pred CcccChHHHHHHCCCEEEECCCCCccc------C-C----C-HHHHHHHHHHH-hCCCHHHHHHHHHHHHHHH---CCCH
Confidence 1 235778899999885 55543321 0 0 0 12233332222 2233455566666655543 5556
Q ss_pred HHHHHHHHHHHHh
Q 044542 448 KMASAYERFFLRM 460 (465)
Q Consensus 448 ~~~~~~~~~~~~~ 460 (465)
..-+++.+-+++.
T Consensus 325 ~~k~~l~~~~~~~ 337 (340)
T PRK09358 325 EEKAALLAEVDAW 337 (340)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 351
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=38.20 E-value=38 Score=31.98 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=22.9
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTA 121 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 121 (465)
|||+++.. .|+. -..+++.|.+.|++|.++..
T Consensus 1 m~vlVtGa-------tG~i---G~~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGG-------SGYI---GSHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred CeEEEECC-------CChH---HHHHHHHHHHCCCeEEEEec
Confidence 68877632 2544 45678888999999998753
No 352
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=37.87 E-value=55 Score=33.13 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=26.4
Q ss_pred eEEEEeCCCCCCC-CCCh--HHHHHHHHHHHHHhCC-cEEEEEeCC
Q 044542 81 KLAVFSKTWPIGA-APGG--MERHASTLYHALAARG-HEIHVFTAP 122 (465)
Q Consensus 81 kIl~v~~~~p~~~-~~gG--~~~~~~~l~~~L~~~G-~~V~v~~~~ 122 (465)
||++|.+.++.+. ...| ...-+..++..|.+.| |+|.++-..
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~~ 46 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDAM 46 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEeccc
Confidence 6888887653210 0111 1223567888899999 899999544
No 353
>PRK09273 hypothetical protein; Provisional
Probab=37.77 E-value=72 Score=27.78 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=29.7
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|||+++... ...+=-+.....+.+.|.+.||+|.=+....
T Consensus 1 mkiali~e~----sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~~ 40 (211)
T PRK09273 1 MKIALINEN----SQAAKNAIIYEALKKVADPKGHEVFNYGMYD 40 (211)
T ss_pred CeEEeeccc----chhhhhHHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 899999865 2333345577888999999999997777643
No 354
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=37.75 E-value=37 Score=37.88 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=34.0
Q ss_pred ccccccCCCCCceeEEEEeCCCCCCCCCCh------HHHHHHHHHHHHHhCCcEEE
Q 044542 68 WNKLCFGPTFEKLKLAVFSKTWPIGAAPGG------MERHASTLYHALAARGHEIH 117 (465)
Q Consensus 68 ~~~l~~~~~~~~mkIl~v~~~~p~~~~~gG------~~~~~~~l~~~L~~~G~~V~ 117 (465)
|-+|...+... .||++|..+||++...-| ....+.++.+.|++.||+|.
T Consensus 360 W~~Lr~~pn~e-KriAiil~nyP~~~~~ig~a~gLD~p~Sl~~iL~~Lk~~GY~v~ 414 (1122)
T TIGR02257 360 WIKLQRKPNAE-RRIALVLANYPVRDGRIGNGVGLDTPASVVNILHALKEQGYDLG 414 (1122)
T ss_pred HHHHccCChhh-CEEEEEecCCCCCcCccceecCCChHHHHHHHHHHHHHCCCCCC
Confidence 55554333333 499999999986444333 23467889999999999995
No 355
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=37.71 E-value=2.8e+02 Score=24.22 Aligned_cols=76 Identities=17% Similarity=0.272 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCC--cchhHHH---HhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHH
Q 044542 304 LLYEAFSSITRDHPGVYLLVAGTG--PWGRRYA---ELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEA 378 (465)
Q Consensus 304 ~ll~a~~~l~~~~~~~~l~ivG~g--~~~~~~~---~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EA 378 (465)
..+++++++++++|+ +++|-| -..+..+ +.+.+..+.+.. ..++.+.-+..++.++|.. -.|.=+..|
T Consensus 45 ~a~~~i~~l~~~~~~---~~vGAGTVl~~~~a~~a~~aGA~FivsP~~-~~~v~~~~~~~~i~~iPG~---~TptEi~~A 117 (204)
T TIGR01182 45 VALDAIRLLRKEVPD---ALIGAGTVLNPEQLRQAVDAGAQFIVSPGL-TPELAKHAQDHGIPIIPGV---ATPSEIMLA 117 (204)
T ss_pred cHHHHHHHHHHHCCC---CEEEEEeCCCHHHHHHHHHcCCCEEECCCC-CHHHHHHHHHcCCcEECCC---CCHHHHHHH
Confidence 345666677767775 334433 2333333 344566565555 3778888888888888753 356678888
Q ss_pred HHcCCeEE
Q 044542 379 MHCGRTVL 386 (465)
Q Consensus 379 ma~G~PvI 386 (465)
+.+|..+|
T Consensus 118 ~~~Ga~~v 125 (204)
T TIGR01182 118 LELGITAL 125 (204)
T ss_pred HHCCCCEE
Confidence 88887766
No 356
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=37.59 E-value=38 Score=38.20 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=33.7
Q ss_pred ccccccCCCCCceeEEEEeCCCCCCCCCCh------HHHHHHHHHHHHHhCCcEEE
Q 044542 68 WNKLCFGPTFEKLKLAVFSKTWPIGAAPGG------MERHASTLYHALAARGHEIH 117 (465)
Q Consensus 68 ~~~l~~~~~~~~mkIl~v~~~~p~~~~~gG------~~~~~~~l~~~L~~~G~~V~ 117 (465)
|-+|...+... .||++|..+||++...=| .-..+.++.+.|++.||+|.
T Consensus 433 w~~Lr~k~n~e-KKVAIil~nyPpg~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 487 (1220)
T PLN03069 433 WANLKRKTKAE-KKLAITVFSFPPDKGNVGTAAYLNVFGSIFSVLKDLKRDGYNVG 487 (1220)
T ss_pred HHHHccCChhh-CEEEEEecCCCCCCCccccccccChHHHHHHHHHHHHHCCCCcC
Confidence 55554333333 499999999997543333 22457889999999999994
No 357
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=37.48 E-value=38 Score=38.13 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=33.5
Q ss_pred ccccccCCCCCceeEEEEeCCCCCCCCCCh------HHHHHHHHHHHHHhCCcEEE
Q 044542 68 WNKLCFGPTFEKLKLAVFSKTWPIGAAPGG------MERHASTLYHALAARGHEIH 117 (465)
Q Consensus 68 ~~~l~~~~~~~~mkIl~v~~~~p~~~~~gG------~~~~~~~l~~~L~~~G~~V~ 117 (465)
|-+|...+... .||++|..+||++...=| ....+.++.+.|++.||+|.
T Consensus 406 w~~Lr~k~n~e-KkvAIil~nyPpg~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 460 (1216)
T TIGR02025 406 WVRLRKKPNAE-KKVAIVLFNFPPGLGNVGTAAYLDVFESLYELLHRLKDEGYNVG 460 (1216)
T ss_pred HHHHccCChhh-CEEEEEecCCCCCCCcccccccCChHHHHHHHHHHHHHCCCCCC
Confidence 55554333333 499999999997553323 23457889999999999994
No 358
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=37.37 E-value=54 Score=29.46 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=24.2
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
+|||+++.. .|+.+ ..+++.|.+.||+|+.++...
T Consensus 17 ~~~ilItGa-------sG~iG---~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 17 TKTVFVAGA-------TGRTG---KRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred CCeEEEECC-------CcHHH---HHHHHHHHhCCCEEEEEecCH
Confidence 467877743 25544 467788888999998877553
No 359
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=37.20 E-value=81 Score=27.44 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=31.6
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKP 127 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~ 127 (465)
.-+|++++.. .+.||-.. -.++.|...|++|+|+...+....
T Consensus 49 ~~~v~vlcG~----GnNGGDG~---VaAR~L~~~G~~V~v~~~~~~~~~ 90 (203)
T COG0062 49 ARRVLVLCGP----GNNGGDGL---VAARHLKAAGYAVTVLLLGDPKKL 90 (203)
T ss_pred CCEEEEEECC----CCccHHHH---HHHHHHHhCCCceEEEEeCCCCCc
Confidence 3479999874 46677644 467899999999999997765543
No 360
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=37.13 E-value=38 Score=38.09 Aligned_cols=49 Identities=22% Similarity=0.185 Sum_probs=34.5
Q ss_pred ccccccCCCCCceeEEEEeCCCCCCCCCCh------HHHHHHHHHHHHHhCCcEEE
Q 044542 68 WNKLCFGPTFEKLKLAVFSKTWPIGAAPGG------MERHASTLYHALAARGHEIH 117 (465)
Q Consensus 68 ~~~l~~~~~~~~mkIl~v~~~~p~~~~~gG------~~~~~~~l~~~L~~~G~~V~ 117 (465)
|-+|...+... .||++|..+||++...=| ....+.++.+.|++.||+|.
T Consensus 428 w~~Lr~k~n~e-KkvAIil~nyPpg~~~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 482 (1209)
T PRK13405 428 LVALRRSERAE-RKVAVVLFNFPPNAGATGTAAYLSVFESLFNTLRAMKAEGYTVE 482 (1209)
T ss_pred HHHHccCChhh-CEEEEEecCCCCCCCccccccccChHHHHHHHHHHHHHCCCCCC
Confidence 66665443333 499999999997543323 22457889999999999995
No 361
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=37.00 E-value=89 Score=28.06 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=34.4
Q ss_pred CCCCceeEEEEeC--CCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 75 PTFEKLKLAVFSK--TWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 75 ~~~~~mkIl~v~~--~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|..++.++++|.. .|...+...|.+.=+..|.+.|.+.|++|++.....
T Consensus 3 m~~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt 53 (241)
T smart00115 3 MNSKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLT 53 (241)
T ss_pred CCCCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCC
Confidence 3444456666654 343234567888889999999999999999876543
No 362
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=36.91 E-value=79 Score=26.87 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 99 ERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 99 ~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
......+.+.|.+.|++|+++.+...
T Consensus 13 a~~~~~ll~~L~~~g~~V~vi~T~~A 38 (177)
T TIGR02113 13 AYKAADLTSQLTKLGYDVTVLMTQAA 38 (177)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEChHH
Confidence 34567899999999999999987653
No 363
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=36.85 E-value=75 Score=30.88 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=32.9
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
-++++.+.. ..|..+.+++.++..+++.|++|.|+...+-
T Consensus 126 P~vvilpGl----tg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~ 165 (409)
T KOG1838|consen 126 PIVVILPGL----TGGSHESYVRHLVHEAQRKGYRVVVFNHRGL 165 (409)
T ss_pred cEEEEecCC----CCCChhHHHHHHHHHHHhCCcEEEEECCCCC
Confidence 466666653 5677889999999999999999999988763
No 364
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=36.70 E-value=39 Score=38.45 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=33.4
Q ss_pred ccccccCCCCCceeEEEEeCCCCCCCCCCh------HHHHHHHHHHHHHhCCcEE
Q 044542 68 WNKLCFGPTFEKLKLAVFSKTWPIGAAPGG------MERHASTLYHALAARGHEI 116 (465)
Q Consensus 68 ~~~l~~~~~~~~mkIl~v~~~~p~~~~~gG------~~~~~~~l~~~L~~~G~~V 116 (465)
|-+|...+... .||++|..+||++...=| ....+.++.+.|++.||+|
T Consensus 421 w~~Lr~k~n~e-KkVAIil~nyPpg~g~iG~Aa~LDv~~Sl~~iL~~Lk~~GY~v 474 (1310)
T PRK12493 421 WVRLRRKPRAE-KKLAITLFSFPPDKGNVGTAAYLDVFGSIYRLLQELKAAGYDV 474 (1310)
T ss_pred HHHHccCChhh-CEEEEEecCCCCCCCcccccccCChHHHHHHHHHHHHHCCCCC
Confidence 55554333333 499999999997553323 2345788999999999999
No 365
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=36.63 E-value=85 Score=29.17 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=31.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|||+++....- +...-.-.....++++|.+.||+|.++...
T Consensus 1 ~~v~v~~gg~s--~e~~~sl~s~~~i~~al~~~g~~~~~i~~~ 41 (299)
T PRK14571 1 MRVALLMGGVS--REREISLRSGERVKKALEKLGYEVTVFDVD 41 (299)
T ss_pred CeEEEEeCCCC--CCccchHHHHHHHHHHHHHcCCeEEEEccC
Confidence 78999987642 233444467889999999999999998654
No 366
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=36.62 E-value=4.1e+02 Score=25.89 Aligned_cols=176 Identities=11% Similarity=0.081 Sum_probs=86.6
Q ss_pred hcccCEEEEeChhHHHHHHHHhCCCCCCEEEecCCCCCCCccCCcc-cCcccccccCCCCCCcEEEEEeecc---ccccC
Q 044542 226 FSSYNQHICISNSAAEVLVKIYQLPQRNVHVILNGVDETKFVHDPE-AGVRFPEKLGVPANVSLVMGVAGRL---VRDKG 301 (465)
Q Consensus 226 ~~~~d~ii~~S~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~-~~~~~r~~~g~~~~~~~~l~~~Grl---~~~Kg 301 (465)
+...|.|.--.+..++.+.+.......++.+|...+-.+..-.+-. ...+++++.+ .+++.+....+ ....|
T Consensus 62 l~E~d~V~Gg~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~----~~vi~v~t~gf~g~~~~~G 137 (406)
T cd01967 62 MQEKDIVFGGEKKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKELG----IPVIPVNCEGFRGVSQSLG 137 (406)
T ss_pred CCccceeeCcHHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhC----CCEEEEeCCCeeCCcccHH
Confidence 3445666655566666666544322334445544443333322211 0012222332 22444333332 23567
Q ss_pred HHHHHHHHHHhhhc------CCCeEEEEEeCCcc-------hhHHHHhc--CCeEEcCCCChhHHHHHHHhcCeEEeccc
Q 044542 302 HPLLYEAFSSITRD------HPGVYLLVAGTGPW-------GRRYAELG--QNVKVLGALEAHQLSEFYNALDVFVNPTL 366 (465)
Q Consensus 302 ~~~ll~a~~~l~~~------~~~~~l~ivG~g~~-------~~~~~~l~--~~V~~~g~v~~~~~~~~~~~aDv~v~ps~ 366 (465)
.+..++++...... .++-.+.|+|.-.. ++.+++++ .+..+.|..+-+++.. +..|.+-|..+.
T Consensus 138 ~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~~niv~~~ 216 (406)
T cd01967 138 HHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAKLNLVHCS 216 (406)
T ss_pred HHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCCEEEEECh
Confidence 78777776543221 12345777886321 12333444 4455666666677776 555665554332
Q ss_pred CCCCCcHHHHHHH--HcCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhC
Q 044542 367 RPQGLDLTLIEAM--HCGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRD 424 (465)
Q Consensus 367 ~~eg~~~~~~EAm--a~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~ 424 (465)
.++....+.| .+|.|.+....-|.. +.+++.+.|.+++..
T Consensus 217 ---~~~~~~a~~L~~r~GiP~~~~~p~G~~---------------~t~~~l~~l~~~lg~ 258 (406)
T cd01967 217 ---RSMNYLAREMEERYGIPYMEVNFYGFE---------------DTSESLRKIAKFFGD 258 (406)
T ss_pred ---HHHHHHHHHHHHhhCCCEEEecCCcHH---------------HHHHHHHHHHHHhCC
Confidence 1345556555 378898753211111 456677777777664
No 367
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=36.56 E-value=68 Score=28.57 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=19.7
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 94 APGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
..|+++ ..++++|.++|++|+++...
T Consensus 24 SSG~iG---~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 24 STGQLG---KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred cchHHH---HHHHHHHHhCCCEEEEEECc
Confidence 445554 57889999999999999743
No 368
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=36.53 E-value=56 Score=28.05 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=27.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|||++|-+. ..+..++++.|.+.|+++.++....
T Consensus 2 ~~iliid~~----------dsf~~~i~~~l~~~g~~~~v~~~~~ 35 (190)
T PRK06895 2 TKLLIINNH----------DSFTFNLVDLIRKLGVPMQVVNVED 35 (190)
T ss_pred cEEEEEeCC----------CchHHHHHHHHHHcCCcEEEEECCc
Confidence 799999764 2356779999999999999987643
No 369
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=36.46 E-value=1e+02 Score=25.08 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=27.1
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 82 LAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 82 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
|+++++. ...|....+.+++..|++.|++|.++-....
T Consensus 3 i~v~s~~-----~g~G~t~~a~~lA~~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 3 IAVWSPK-----GGVGKTTLALNLAAALARKGKKVLLIDFDFF 40 (157)
T ss_dssp EEEEESS-----TTSSHHHHHHHHHHHHHHTTT-EEEEE--SS
T ss_pred EEEECCC-----CCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 4555543 4578888999999999999999877776653
No 370
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=36.35 E-value=28 Score=39.38 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=33.5
Q ss_pred ccccccCCCCCceeEEEEeCCCCCCCCCChH------HHHHHHHHHHHHhCCcEEE
Q 044542 68 WNKLCFGPTFEKLKLAVFSKTWPIGAAPGGM------ERHASTLYHALAARGHEIH 117 (465)
Q Consensus 68 ~~~l~~~~~~~~mkIl~v~~~~p~~~~~gG~------~~~~~~l~~~L~~~G~~V~ 117 (465)
|-+|...+... .||++|..+||++...=|. ...+.++.+.|++.||+|.
T Consensus 363 w~~Lr~k~n~e-KkVAiil~nyP~~~~~ig~a~gLDvp~Sl~~iL~~L~~~GY~v~ 417 (1244)
T PRK05989 363 WARLRRKPNAD-KRVALILANYPTKDGRIGNAVGLDTPASAVRLLRALRAAGYDVG 417 (1244)
T ss_pred HHHHccCChhH-CEEEEEecCCCCCCCcceecccCChHHHHHHHHHHHHHCCCCCC
Confidence 55554333333 4999999999975532222 2367889999999999993
No 371
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=36.26 E-value=1e+02 Score=29.94 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
...+|+|+.++.. .+.-|-...+.+|+.+|+..|+.|.++-.+..
T Consensus 100 ~g~~~~vI~v~n~----KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ 144 (387)
T TIGR03453 100 GGEHLQVIAVTNF----KGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQ 144 (387)
T ss_pred CCCCceEEEEEcc----CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 3456787777653 22234455678999999999999999977653
No 372
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=36.14 E-value=2.1e+02 Score=27.49 Aligned_cols=75 Identities=7% Similarity=0.065 Sum_probs=47.9
Q ss_pred cEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEeccc
Q 044542 287 SLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTL 366 (465)
Q Consensus 287 ~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~ 366 (465)
.+.|+..|.. ....++|.+.|.+++-++.++ ++.++-.+|.+.+.+.++.++-++..-.
T Consensus 235 di~Iia~Gs~-----~~~aleAa~~L~~~Gi~v~vI----------------~~~~l~Pld~e~i~~~~~~~~~IvvvEE 293 (355)
T PTZ00182 235 DVTIVGYGSQ-----VHVALKAAEELAKEGISCEVI----------------DLRSLRPWDRETIVKSVKKTGRCVIVHE 293 (355)
T ss_pred CEEEEEeCHH-----HHHHHHHHHHHHhCCCcEEEE----------------EEeeCCCCCHHHHHHHHhcCCEEEEEEe
Confidence 3666666654 345677777776543333322 3455667787888999988887666321
Q ss_pred --CCCCCcHHHHHHHHcC
Q 044542 367 --RPQGLDLTLIEAMHCG 382 (465)
Q Consensus 367 --~~eg~~~~~~EAma~G 382 (465)
...|+|-.+.|.++-.
T Consensus 294 ~~~~GGlG~~Va~~l~e~ 311 (355)
T PTZ00182 294 APPTCGIGAEIAAQIMED 311 (355)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 2358888888888654
No 373
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=36.13 E-value=2.8e+02 Score=24.37 Aligned_cols=47 Identities=9% Similarity=-0.103 Sum_probs=32.1
Q ss_pred ChhHHHHHHHhcCeEEeccc---------CCCCCcHHHHHHHHcCCeEEecCCCCc
Q 044542 347 EAHQLSEFYNALDVFVNPTL---------RPQGLDLTLIEAMHCGRTVLTPNYPSI 393 (465)
Q Consensus 347 ~~~~~~~~~~~aDv~v~ps~---------~~eg~~~~~~EAma~G~PvI~s~~gg~ 393 (465)
+..++.+.+..+|++++..- ...+.--.+-++...|.|++.+..|.+
T Consensus 73 ~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~ 128 (217)
T cd03145 73 NDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAA 128 (217)
T ss_pred CCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHH
Confidence 34677889999999988521 112233467778889999998775543
No 374
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=35.99 E-value=81 Score=28.12 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=29.6
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
|||..|... .+.-|-...+.+|+.+|++.|+.|.++-.+..
T Consensus 1 m~iI~v~s~----KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIVGV----KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEEeC----CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 565555442 23345566788999999999999999987763
No 375
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.92 E-value=66 Score=28.44 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=23.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
++|+++.. .||. -..+++.|.++||+|.+++...
T Consensus 7 ~~vlItGa-------sg~i---G~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 7 RVALVTGA-------ARGL---GRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CEEEEeCC-------CchH---HHHHHHHHHHCCCeEEEEeCCC
Confidence 46776532 2554 4578888999999987766554
No 376
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=35.75 E-value=1.4e+02 Score=25.93 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=31.2
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHh-CCcEEEEEeCCCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAA-RGHEIHVFTAPSD 124 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~ 124 (465)
.+||++.++.. ...-|-...+.+|+.+|++ .|++|.++-....
T Consensus 33 ~~~~vi~v~s~----kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 33 KNNNLIMVTSS----LPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCCeEEEEECC----CCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 45676666653 2345667788999999996 6999999877654
No 377
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=35.52 E-value=71 Score=30.14 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=31.1
Q ss_pred eeEEEEeCCCCCCCCCChHHH--HHHHHHHHHHhCCcEEEEEeCCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMER--HASTLYHALAARGHEIHVFTAPSDRKP 127 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~--~~~~l~~~L~~~G~~V~v~~~~~~~~~ 127 (465)
|||++++. .||.++ ....++-.|++.|..|.+++..+.+..
T Consensus 2 ~riv~f~G-------KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 2 TRIVFFTG-------KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred cEEEEEec-------CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 68888874 488777 666677888999988888887765543
No 378
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=35.24 E-value=1.4e+02 Score=28.06 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 96 GGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
-|.-.....+++.|.+.|.+|.+......+
T Consensus 11 dgLl~~a~~ia~~l~~~~~~v~I~gD~tYG 40 (308)
T TIGR03682 11 EGLKRRAFEIAQKLEEKGYEVIISGEPCYG 40 (308)
T ss_pred hhHHHHHHHHHHHHHhCCceEEEEcCCcee
Confidence 467778888999998888888887755443
No 379
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=35.08 E-value=84 Score=30.56 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=27.4
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
.+++|||+++.. | .....++.++.+.|++|.++...+.
T Consensus 9 ~~~~~~ilIiG~---------g--~~~~~~~~a~~~~G~~v~~~~~~~~ 46 (395)
T PRK09288 9 SPSATRVMLLGS---------G--ELGKEVAIEAQRLGVEVIAVDRYAN 46 (395)
T ss_pred CCCCCEEEEECC---------C--HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 446789999843 1 2345677788899999999887654
No 380
>PRK04155 chaperone protein HchA; Provisional
Probab=34.89 E-value=1.7e+02 Score=27.12 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=29.8
Q ss_pred ceeEEEEeCCCCC-----CC--CCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPI-----GA--APGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~-----~~--~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.+|||+|....-. +. ..|=-+.-+..-...|.+.|++|++.+...
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3499999875311 11 123233445566788999999999999865
No 381
>PRK01355 azoreductase; Reviewed
Probab=34.89 E-value=1.3e+02 Score=26.03 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=28.3
Q ss_pred ceeEEEEeCCCCCCCC--CCh-HHHHHHHHHHHHHhC--CcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAA--PGG-MERHASTLYHALAAR--GHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~--~gG-~~~~~~~l~~~L~~~--G~~V~v~~~~~ 123 (465)
+|||++|..+ +. .+| ....+..+++.+.+. |++|.++....
T Consensus 1 M~kIliI~gS----pr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~ 46 (199)
T PRK01355 1 MSKVLVIKGS----MVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNE 46 (199)
T ss_pred CCeEEEEECC----CCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3799999876 23 244 445677778888774 58888887654
No 382
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.86 E-value=3.6e+02 Score=24.68 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=55.5
Q ss_pred EeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeC-----------CcchhHHHHhc-----CCe-EEcCCCChhHHHHH
Q 044542 292 VAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGT-----------GPWGRRYAELG-----QNV-KVLGALEAHQLSEF 354 (465)
Q Consensus 292 ~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-----------g~~~~~~~~l~-----~~V-~~~g~v~~~~~~~~ 354 (465)
++|- .--...+.+++..+++++. .++++..|. |...+.++.+. -.+ .+....+.+++..+
T Consensus 31 iaGP-Csie~~~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 31 IAGP-CAVESEEQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred EEeC-CcCCCHHHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 4454 4456678888888888875 355666662 21222222221 222 22333344566666
Q ss_pred HHhcCeEEecccCCCCCcHHHHHHH-HcCCeEEecCC
Q 044542 355 YNALDVFVNPTLRPQGLDLTLIEAM-HCGRTVLTPNY 390 (465)
Q Consensus 355 ~~~aDv~v~ps~~~eg~~~~~~EAm-a~G~PvI~s~~ 390 (465)
...+|++-.+|. +.....+++++ ..|+||+.++-
T Consensus 108 ~~~vd~~kIga~--~~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 108 ADYADMLQIGSR--NMQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHhCCEEEECcc--cccCHHHHHHHhcCCCcEEEeCC
Confidence 666999999985 44445555555 67999998764
No 383
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=34.79 E-value=1.3e+02 Score=26.22 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=35.6
Q ss_pred CCeEEcCC-CChh---HHHHHHHhcCeEEe--cccCCCCCcHHHHHHHHcCCeEEecCCCC
Q 044542 338 QNVKVLGA-LEAH---QLSEFYNALDVFVN--PTLRPQGLDLTLIEAMHCGRTVLTPNYPS 392 (465)
Q Consensus 338 ~~V~~~g~-v~~~---~~~~~~~~aDv~v~--ps~~~eg~~~~~~EAma~G~PvI~s~~gg 392 (465)
++|.+.|. +|.+ +..+.++.||++|. +|..-.+...-+-+|...|.|+|.-+...
T Consensus 132 P~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~ 192 (206)
T cd01410 132 DTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQP 192 (206)
T ss_pred CcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCC
Confidence 77888776 4543 56667788999887 34322233333446778999999766543
No 384
>PRK00211 sulfur relay protein TusC; Validated
Probab=34.62 E-value=98 Score=24.26 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=28.3
Q ss_pred eeEEEEeCCCCCCCCCCh-HHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGG-MERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG-~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
|||+++.+.-|. |. ..+-..+++-+++..+++|.++...+.
T Consensus 2 ~ki~~i~~~~Py----g~~~~~eaLd~ala~~a~~~~v~vff~~Dg 43 (119)
T PRK00211 2 KRIAFVFRQAPH----GTASGREGLDALLATSAFTEDIGVFFIDDG 43 (119)
T ss_pred ceEEEEecCCCC----CCHHHHHHHHHHHHHhcccCCeeEEEEhhh
Confidence 479999987543 33 334455557777778889988887763
No 385
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=34.61 E-value=1.8e+02 Score=24.39 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=44.8
Q ss_pred cCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcce---eeeeeCCceEEeCC-CHHHHHHHHHHHHhC
Q 044542 358 LDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVR---TVVVNEELGYTFSP-NVKSFVEALELVIRD 424 (465)
Q Consensus 358 aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~---e~v~~~~~G~l~~~-d~~~la~~i~~ll~~ 424 (465)
.|++++-...++.-|..+++.+..+.|+|........+ ..+..+..+++..+ +.+++.+++..++..
T Consensus 48 ~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 48 VQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 57877754333445677777777777887543222221 23445678899999 999999999988764
No 386
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=34.55 E-value=91 Score=24.76 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=28.6
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEE-EEEeCCCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEI-HVFTAPSD 124 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V-~v~~~~~~ 124 (465)
|++++...=| ..+-..+....+++++.+.||+| .||...+.
T Consensus 1 ~~~iv~~~~P---~~~~~~~~al~~A~aa~~~gh~v~~vFf~~Dg 42 (127)
T TIGR03012 1 KYTLLVTGPP---YGTQAASSAYQFAQALLAKGHEIVRVFFYQDG 42 (127)
T ss_pred CEEEEEeCCC---CCcHHHHHHHHHHHHHHHCCCcEEEEEEehHH
Confidence 4566665533 33445678899999999999995 77776653
No 387
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=34.26 E-value=2.3e+02 Score=25.31 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=37.3
Q ss_pred HhcCCeEEcCCCChhHHHHHHHhcCeEEeccc---------CCCCCcHHHHHHHHcCCeEEecCCCC
Q 044542 335 ELGQNVKVLGALEAHQLSEFYNALDVFVNPTL---------RPQGLDLTLIEAMHCGRTVLTPNYPS 392 (465)
Q Consensus 335 ~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~---------~~eg~~~~~~EAma~G~PvI~s~~gg 392 (465)
+++-.|..+-.. ++..+.+..+|+++++.- ...++--.+-|+...|+|++.+..|.
T Consensus 59 ~lG~~v~~l~~~--~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 59 PLGIEVTGIHRV--ADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred HCCCEEEEeccc--hhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 344334444322 566788999999888631 11244456778999999999988765
No 388
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=34.19 E-value=1.1e+02 Score=27.73 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=57.1
Q ss_pred HHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCC-CHHHHHHHHHHHHhC-ChH
Q 044542 350 QLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSP-NVKSFVEALELVIRD-GPK 427 (465)
Q Consensus 350 ~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~-d~~~la~~i~~ll~~-~~~ 427 (465)
.-..-++.||++|.-....|++--.+.++.......+..-..++..+-..++. -+..++ +...++++|.+.+.. .|+
T Consensus 40 ~d~~~l~~Adlvv~~G~~~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~np-H~Wldp~~~~~~~~~Ia~~L~~~~P~ 118 (256)
T PF01297_consen 40 SDIKKLQKADLVVYNGLGLEPWLEKLLESSQNPKVKVIDLSEGIDLDHHGHNP-HVWLDPENAKKMAEAIADALSELDPA 118 (256)
T ss_dssp HHHHHHHHSSEEEES-TTTSCCHHHHHHTTTTTTTEEEETTTTS-GSTTCBES-TGGGSHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHhCCEEEEeCCccchhhhhhhhcccccccceEEeecccccccCCCCC-chHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 34456688999998654347775566644444444444333333200011121 244444 666666666655542 366
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 428 VLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 428 ~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
..+...+++.++..+ ++.+.+++.+.+..+
T Consensus 119 ~~~~y~~N~~~~~~~---L~~l~~~~~~~~~~~ 148 (256)
T PF01297_consen 119 NKDYYEKNAEKYLKE---LDELDAEIKEKLAKL 148 (256)
T ss_dssp GHHHHHHHHHHHHHH---HHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHH---HHHHHHHHHHHhhcc
Confidence 666677777766654 566666666655543
No 389
>PRK13768 GTPase; Provisional
Probab=34.18 E-value=97 Score=28.06 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=30.1
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|++.+++. +...|-.+.+.+++.+|+..|++|.++...+
T Consensus 2 ~~~i~v~G-----~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLG-----TAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEEC-----CCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 46666664 2446667788999999999999999998665
No 390
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=34.17 E-value=81 Score=27.84 Aligned_cols=42 Identities=26% Similarity=0.217 Sum_probs=29.1
Q ss_pred eeEEEEeCCCCCCCCCChHH-HHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGME-RHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
+||+++.... ...+|.+ .-+..-...|.+.|++|+++++...
T Consensus 2 kkVlills~~---~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~ 44 (217)
T PRK11780 2 KKIAVILSGC---GVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIP 44 (217)
T ss_pred CEEEEEEccC---CCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3899988643 1223443 3355667889999999999998653
No 391
>PRK11914 diacylglycerol kinase; Reviewed
Probab=34.07 E-value=1.2e+02 Score=28.39 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=29.1
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
++|+++|.+-. ...|...+...++.+.|.+.|+++.++....
T Consensus 8 ~~~~~iI~NP~---sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 8 IGKVTVLTNPL---SGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred CceEEEEECCC---CCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 35888887631 2333445667788999999999988776654
No 392
>CHL00175 minD septum-site determining protein; Validated
Probab=34.06 E-value=1e+02 Score=28.35 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=29.8
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
++||+.|+.. ...-|-...+.+|+.+|++.|++|.++-.+.
T Consensus 14 ~~~vi~v~s~----KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 14 MSRIIVITSG----KGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CceEEEEEcC----CCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3466666653 2334556778999999999999999886655
No 393
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=34.04 E-value=60 Score=31.09 Aligned_cols=122 Identities=7% Similarity=0.046 Sum_probs=59.4
Q ss_pred EEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEec--c
Q 044542 288 LVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNP--T 365 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~p--s 365 (465)
.+..++++.....+=..+ +.+|.+. +.+...|..... ...+.++..++++.....+.. |
T Consensus 177 ~~~w~~Snc~~~~~R~~~---~~~L~~~---~~vd~yG~c~~~-------------~~~~~~~~~~~~~~ykF~lafENs 237 (349)
T PF00852_consen 177 LAAWIVSNCNPHSGREEY---VRELSKY---IPVDSYGKCGNN-------------NPCPRDCKLELLSKYKFYLAFENS 237 (349)
T ss_dssp EEEE--S-S--H-HHHHH---HHHHHTT---S-EEE-SSTT---------------SSS--S-HHHHHHTEEEEEEE-SS
T ss_pred eEEEEeeCcCCcccHHHH---HHHHHhh---cCeEccCCCCCC-------------CCcccccccccccCcEEEEEecCC
Confidence 555455554443332233 4444432 458888875100 012334567777777777652 2
Q ss_pred cCCCCC-cHHHHHHHHcCC-eEEecC-CCCcceeeeeeCCceEEeCC--CHHHHHHHHHHHHhCChHHHHHH
Q 044542 366 LRPQGL-DLTLIEAMHCGR-TVLTPN-YPSIVRTVVVNEELGYTFSP--NVKSFVEALELVIRDGPKVLQRK 432 (465)
Q Consensus 366 ~~~eg~-~~~~~EAma~G~-PvI~s~-~gg~~~e~v~~~~~G~l~~~--d~~~la~~i~~ll~~~~~~~~~~ 432 (465)
.. +++ -=++.+|+..|+ ||+-.. .+... +++.. ..-+-++. ++++||+-|..+.+| ++.+.+.
T Consensus 238 ~c-~dYiTEK~~~al~~g~VPI~~G~~~~~~~-~~~P~-~SfI~~~df~s~~~La~yl~~l~~n-~~~Y~~y 305 (349)
T PF00852_consen 238 NC-PDYITEKFWNALLAGTVPIYWGPPRPNYE-EFAPP-NSFIHVDDFKSPKELADYLKYLDKN-DELYNKY 305 (349)
T ss_dssp ---TT---HHHHHHHHTTSEEEEES---TTHH-HHS-G-GGSEEGGGSSSHHHHHHHHHHHHT--HHHHH--
T ss_pred CC-CCCCCHHHHHHHHCCeEEEEECCEecccc-cCCCC-CCccchhcCCCHHHHHHHHHHHhcC-HHHHhhh
Confidence 22 222 238889999998 454432 33333 44433 33344443 899999999999998 6665543
No 394
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=34.04 E-value=96 Score=30.20 Aligned_cols=44 Identities=11% Similarity=0.010 Sum_probs=30.7
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeC-CC
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTA-PS 123 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~-~~ 123 (465)
...+++|+-|++. .+.-|-.+.+.+|+.+|+.+|+.|.++-. .+
T Consensus 102 ~~~~~~vIav~n~----KGGVGKTTta~nLA~~LA~~G~rVLlIDl~Dp 146 (387)
T PHA02519 102 DDKNPVVLAVMSH----KGGVYKTSSAVHTAQWLALQGHRVLLIEGNDP 146 (387)
T ss_pred CCCCceEEEEecC----CCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4455777767653 22234445688999999999999999874 44
No 395
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.02 E-value=95 Score=30.30 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=30.6
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRK 126 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 126 (465)
.+|++++.. ...||.... .++.|+..||.+.++.+.....
T Consensus 267 P~V~Ilcgp----gnnggdg~v---~gRHL~~~G~~~vi~~pk~s~~ 306 (453)
T KOG2585|consen 267 PLVAILCGP----GNNGGDGLV---CGRHLAQHGYTPVIYYPKRSLN 306 (453)
T ss_pred ceEEEEeCC----CCccchhHH---HHHHHHHcCceeEEEeecCccc
Confidence 369999874 356666544 8999999999999999886543
No 396
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.93 E-value=3.7e+02 Score=24.47 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=55.9
Q ss_pred hHHHHHHHhcCeEEecccCCCC-CcHHHHHHHHcCCeEEecCCCCcceeee-----------------eeCCceEEeCC-
Q 044542 349 HQLSEFYNALDVFVNPTLRPQG-LDLTLIEAMHCGRTVLTPNYPSIVRTVV-----------------VNEELGYTFSP- 409 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~eg-~~~~~~EAma~G~PvI~s~~gg~~~e~v-----------------~~~~~G~l~~~- 409 (465)
..-..-++.||++|.-...-|+ |=-.++++. -+.++|.... |+. .+. ......+..++
T Consensus 43 p~d~~~l~~Adlvv~~G~~le~~w~~~~~~~~-~~~~~v~~~~-~i~-~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~ 119 (266)
T cd01018 43 PQQMKKLSEADLYFRIGLGFEEVWLERFRSNN-PKMQVVNMSK-GIT-LIPMADHHHHHHGEHEHHHHGNYDPHIWLSPA 119 (266)
T ss_pred HHHHHHHHhCCEEEEcCCcchHHHHHHHHhhC-CCCeEEECCC-Cce-eccccccccccccccccccCCCCCCccCcCHH
Confidence 3445667888888875432233 333444432 2345554321 221 000 00123445556
Q ss_pred CHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 410 NVKSFVEALELVIRD-GPKVLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 410 d~~~la~~i~~ll~~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
+...++++|.+.+.. .|+..+...+++.++.++ .+..-+.+.+.+..+
T Consensus 120 ~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~~~~~ 168 (266)
T cd01018 120 NAKIMAENIYEALAELDPQNATYYQANLDALLAE---LDALDSEIRTILSKL 168 (266)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 677777777766652 266666777777776655 455555666655543
No 397
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.82 E-value=3.8e+02 Score=24.60 Aligned_cols=107 Identities=11% Similarity=0.057 Sum_probs=57.7
Q ss_pred hHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCC-Ccceeeeee-----CCceEEeCC-CHHHHHHHHHHH
Q 044542 349 HQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYP-SIVRTVVVN-----EELGYTFSP-NVKSFVEALELV 421 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~g-g~~~e~v~~-----~~~G~l~~~-d~~~la~~i~~l 421 (465)
-.-..-++.||++|.-...-|+|--+++++...+.++|....+ ... ..+.+ ...-+..++ +...+++.|.+.
T Consensus 42 p~d~~~l~~Adliv~~G~~~E~w~~k~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~ 120 (276)
T cd01016 42 AGDVEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIALEDTLDRS-QLILDEEEGTYDPHIWFDVKLWKYAVKAVAEV 120 (276)
T ss_pred HHHHHHHHhCCEEEEcCcChHHHHHHHHHHhccCCceEEeccCcCcc-cccccccCCCCCCCcccCHHHHHHHHHHHHHH
Confidence 3445667888988875543366666667665434455543222 111 10111 123455555 667777777766
Q ss_pred HhC-ChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 044542 422 IRD-GPKVLQRKGLACKEHALSMFTATKMASAYERFFLR 459 (465)
Q Consensus 422 l~~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 459 (465)
+.. .|+......+++.++..+ .+.+-+.+.+.+..
T Consensus 121 L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~l~~ 156 (276)
T cd01016 121 LSEKLPEHKDEFQANSEAYVEE---LDSLDAYAKKKIAE 156 (276)
T ss_pred HHHHCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 651 255556666666666555 35555555555544
No 398
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=33.64 E-value=75 Score=28.06 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCcEEEEEeCCC
Q 044542 102 ASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 102 ~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
-..+++.|.+.|++|.+++...
T Consensus 18 G~~l~~~l~~~G~~v~~~~~~~ 39 (248)
T PRK05557 18 GRAIAERLAAQGANVVINYASS 39 (248)
T ss_pred HHHHHHHHHHCCCEEEEEeCCc
Confidence 4578888899999998877654
No 399
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=33.56 E-value=3.4e+02 Score=24.00 Aligned_cols=91 Identities=14% Similarity=0.066 Sum_probs=50.6
Q ss_pred EEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCC--cchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecc
Q 044542 288 LVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTG--PWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPT 365 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g--~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps 365 (465)
.+++++|.+.+.-.-..+++++.+.... .++.+.++.=. +.... .. + . .. .-.++.+.+..||.+|+-|
T Consensus 28 kI~~I~GSlR~~S~n~~la~~~~~~~~~-~g~~v~~idl~~lPl~~~--d~-~--~-~p--~v~~l~~~v~~ADgvii~T 98 (219)
T TIGR02690 28 RILLLYGSLRERSYSRLLAEEAARLLGC-EGRETRIFDPPGLPLPDA--AH-A--D-HP--KVRELRQLSEWSEGQVWCS 98 (219)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHhh-cCCEEEEeCcccCCCCCc--Cc-c--c-CH--HHHHHHHHHHhCCEEEEeC
Confidence 5666889988866666677766655442 14566665421 11110 00 1 0 11 2256788899999999855
Q ss_pred c-CCCCCcHHH---HHHHH---------cCCeEEe
Q 044542 366 L-RPQGLDLTL---IEAMH---------CGRTVLT 387 (465)
Q Consensus 366 ~-~~eg~~~~~---~EAma---------~G~PvI~ 387 (465)
. |..++|-++ ++.+. .|+||-.
T Consensus 99 PEYn~sipg~LKNaiDwls~~~~~~~~~~~Kpvai 133 (219)
T TIGR02690 99 PERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAV 133 (219)
T ss_pred CccccCcCHHHHHHHHhcccCcccccccCCCcEEE
Confidence 3 234555444 34443 4677753
No 400
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=33.51 E-value=1.1e+02 Score=22.12 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=26.6
Q ss_pred eEEEEeCCCCCCCCCChHHHHH-HHHHHHHHhCCcEEEEEeCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHA-STLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~-~~l~~~L~~~G~~V~v~~~~ 122 (465)
||+++|.. + =|....+ ..+-+.+.++|.++.+....
T Consensus 1 kIlvvC~~-----G-i~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGS-----G-IGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESS-----S-SHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCC-----h-HHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 78888863 1 2555556 78888999999888877766
No 401
>PHA00451 protein kinase
Probab=33.35 E-value=85 Score=28.44 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=26.6
Q ss_pred cCCeEEecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhC
Q 044542 381 CGRTVLTPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRD 424 (465)
Q Consensus 381 ~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~ 424 (465)
.|+|+|+-+++-..+ .+.+.| |+-||++|...++.+..+
T Consensus 205 ~g~p~ITDPVSFS~d---r~re~G--F~ldPd~LiaEvEaia~~ 243 (362)
T PHA00451 205 DGVPYITDPVSFSHD---REREPG--FPLDPDELIAEVEAIANQ 243 (362)
T ss_pred CCCeEecCCccccCc---cccCCC--CCCCHHHHHHHHHHHHHH
Confidence 488999887765432 234556 444889998888877653
No 402
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=33.31 E-value=73 Score=31.05 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=25.8
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
...|||+++.. .|++ -..+++.|.++|++|.++....
T Consensus 58 ~~~~kVLVtGa-------tG~I---G~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 58 PKDVTVLVVGA-------TGYI---GKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred CCCCEEEEECC-------CcHH---HHHHHHHHHHCCCEEEEEEech
Confidence 34568877632 2444 4467888888999999987654
No 403
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=33.18 E-value=78 Score=29.13 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 77 FEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 77 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
...+||++. ||++-.-..|++.|...||+|.++-.....
T Consensus 25 ~~~lrI~it----------GgaGFIgSHLvdkLm~egh~VIa~Dn~ftg 63 (350)
T KOG1429|consen 25 SQNLRILIT----------GGAGFIGSHLVDKLMTEGHEVIALDNYFTG 63 (350)
T ss_pred CCCcEEEEe----------cCcchHHHHHHHHHHhcCCeEEEEeccccc
Confidence 345799986 555566778999999999999988766544
No 404
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=33.07 E-value=1.2e+02 Score=24.31 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=33.1
Q ss_pred cccCHHH--HHHHHHHhhhcCCCeEEEEEeCCcchhH---HHHhcCCeEEcCCCChhHHHHHHHhcCeEE
Q 044542 298 RDKGHPL--LYEAFSSITRDHPGVYLLVAGTGPWGRR---YAELGQNVKVLGALEAHQLSEFYNALDVFV 362 (465)
Q Consensus 298 ~~Kg~~~--ll~a~~~l~~~~~~~~l~ivG~g~~~~~---~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v 362 (465)
..|+.|. .+++++.+.+..++.-+++.|+++.... +++.+.+|.+.+. +..--..+.+.||-++
T Consensus 75 ~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~-~~~~s~~L~~~ad~f~ 143 (146)
T PF01936_consen 75 GKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRERGKRVIVVGA-EDSASEALRSAADEFI 143 (146)
T ss_dssp -S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH--EEEEEE--GGGS-HHHHHHSSEEE
T ss_pred ccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHcCCEEEEEEe-CCCCCHHHHHhcCEEE
Confidence 4566664 4467777655445777888888766544 4445578888883 3455666778888766
No 405
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=33.01 E-value=52 Score=30.44 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=23.9
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
||||++... +..-..+.+.|.+.|++|...+..
T Consensus 1 MriLI~Gas----------G~lG~~l~~~l~~~~~~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITGAS----------GFLGSALARALKERGYEVIATSRS 33 (286)
T ss_dssp EEEEEETTT----------SHHHHHHHHHHTTTSEEEEEESTT
T ss_pred CEEEEECCC----------CHHHHHHHHHHhhCCCEEEEeCch
Confidence 899998532 334457889999999988777444
No 406
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=32.96 E-value=1.1e+02 Score=24.58 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 94 APGGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
..|-.++.+..+++.|.++|++|.++......
T Consensus 6 ~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~ 37 (143)
T PF00258_consen 6 MTGNTEKMAEAIAEGLRERGVEVRVVDLDDFD 37 (143)
T ss_dssp SSSHHHHHHHHHHHHHHHTTSEEEEEEGGGSC
T ss_pred CchhHHHHHHHHHHHHHHcCCceeeechhhhh
Confidence 55889999999999999999999999887643
No 407
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=32.95 E-value=4.2e+02 Score=24.86 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=32.2
Q ss_pred EEeCC-CHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Q 044542 405 YTFSP-NVKSFVEALELVIR-DGPKVLQRKGLACKEHALSMFTATKMASAYERFFLRM 460 (465)
Q Consensus 405 ~l~~~-d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~ 460 (465)
+..++ +...++++|.+.+. -.|+..+...+++.++..+ .+..-+++.+.+..+
T Consensus 147 iWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~l~~~ 201 (311)
T PRK09545 147 IWLSPEIARATAVAIHDKLVELMPQSKAKLDANLKDFEAQ---LAQTDKQIGNQLAPV 201 (311)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHH---HHHHHHHHHHHhhcc
Confidence 44445 55666666665554 1267777777777777655 466666666666553
No 408
>PRK13556 azoreductase; Provisional
Probab=32.90 E-value=1.3e+02 Score=26.13 Aligned_cols=42 Identities=5% Similarity=0.008 Sum_probs=27.2
Q ss_pred eeEEEEeCCCCCCCCCChHH-HHHHHHHHHHHhC--CcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGME-RHASTLYHALAAR--GHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~-~~~~~l~~~L~~~--G~~V~v~~~~~ 123 (465)
|||++|..+ |. +..++.. .....+++.+.+. |++|+++-...
T Consensus 2 ~kiL~I~~s-pr-~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~ 46 (208)
T PRK13556 2 SKVLFVKAN-NR-PAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYK 46 (208)
T ss_pred CeEEEEeCC-CC-CCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 689999876 21 0114433 4556677777765 89999887664
No 409
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=32.76 E-value=87 Score=25.98 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=29.9
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
.+||+++.. +..+.+..++..+++.|.+++++++...
T Consensus 2 gl~i~~vGD---------~~~rv~~Sl~~~~~~~g~~~~~~~P~~~ 38 (158)
T PF00185_consen 2 GLKIAYVGD---------GHNRVAHSLIELLAKFGMEVVLIAPEGL 38 (158)
T ss_dssp TEEEEEESS---------TTSHHHHHHHHHHHHTTSEEEEESSGGG
T ss_pred CCEEEEECC---------CCChHHHHHHHHHHHcCCEEEEECCCcc
Confidence 468888863 2257799999999999999999998873
No 410
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=32.75 E-value=71 Score=27.34 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=22.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|||+++...| =| .-++-.|++.||+|..+-...
T Consensus 1 M~I~ViGlGy------vG-----l~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGY------VG-----LPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--ST------TH-----HHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCc------ch-----HHHHHHHHhCCCEEEEEeCCh
Confidence 8999997654 23 468889999999999887654
No 411
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=32.68 E-value=1.6e+02 Score=29.79 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=27.9
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHh----CCcEEEEEeCCCCCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAA----RGHEIHVFTAPSDRKP 127 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~----~G~~V~v~~~~~~~~~ 127 (465)
-+||++ .|| -|.-.....+++.|.+ .|.+|.++.....+..
T Consensus 51 ~krVaL---QFP-----DgLL~~a~~va~~L~~~~~~~~~~v~IlaDtsYGaC 95 (496)
T TIGR00272 51 EYQVAL---QFP-----DDLLKDSSKVVRLLQSKFPHGKIKFWVLADTAYSSC 95 (496)
T ss_pred CCEEEE---ECC-----hHHHHHHHHHHHHHHhhcccCCceEEEEeCCccccc
Confidence 347666 455 4667778888888877 3788888876554443
No 412
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=32.67 E-value=77 Score=31.66 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=28.0
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
||++++.. .+.||-+. -+++.|.+.|++|.|+.....
T Consensus 61 ~VlVlcG~----GNNGGDGl---v~AR~L~~~G~~V~v~~~~~~ 97 (462)
T PLN03049 61 RVLALCGP----GNNGGDGL---VAARHLHHFGYKPSICYPKRT 97 (462)
T ss_pred EEEEEECC----CCCHHHHH---HHHHHHHHCCCceEEEEECCC
Confidence 79998864 46677643 467889999999999987543
No 413
>PLN02650 dihydroflavonol-4-reductase
Probab=32.52 E-value=90 Score=29.72 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=24.6
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
.+++|++. ||.+-.-..+++.|.+.|++|.++...
T Consensus 4 ~~k~iLVT----------GatGfIGs~l~~~L~~~G~~V~~~~r~ 38 (351)
T PLN02650 4 QKETVCVT----------GASGFIGSWLVMRLLERGYTVRATVRD 38 (351)
T ss_pred CCCEEEEe----------CCcHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 44577765 333344557889999999999987654
No 414
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=32.48 E-value=95 Score=23.15 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=24.2
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEE
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHV 118 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v 118 (465)
++||+.+|.. ..|-.-..-..+-+.|+++|+++.+
T Consensus 1 ~~KIL~aCG~-----GvgSS~~ik~kve~~l~~~gi~~~~ 35 (93)
T COG3414 1 MIKILAACGN-----GVGSSTMIKMKVEEVLKELGIDVDV 35 (93)
T ss_pred CcEEEEECCC-----CccHHHHHHHHHHHHHHHcCCCcee
Confidence 3699999864 4555555566777888889985443
No 415
>PRK06924 short chain dehydrogenase; Provisional
Probab=32.43 E-value=65 Score=28.75 Aligned_cols=24 Identities=13% Similarity=0.336 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 96 GGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
||.+ ..+++.|.++|++|.+++..
T Consensus 11 ggiG---~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 11 QGLG---EAIANQLLEKGTHVISISRT 34 (251)
T ss_pred chHH---HHHHHHHHhcCCEEEEEeCC
Confidence 5654 46789999999999887654
No 416
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=32.29 E-value=2.6e+02 Score=24.35 Aligned_cols=47 Identities=6% Similarity=-0.099 Sum_probs=33.1
Q ss_pred ChhHHHHHHHhcCeEEeccc--------CCCC-CcHHHHHHHHcCCeEEecCCCCc
Q 044542 347 EAHQLSEFYNALDVFVNPTL--------RPQG-LDLTLIEAMHCGRTVLTPNYPSI 393 (465)
Q Consensus 347 ~~~~~~~~~~~aDv~v~ps~--------~~eg-~~~~~~EAma~G~PvI~s~~gg~ 393 (465)
+.+++.+.+..||+++++.- +.+. .--.+.+....|+|++.+..|.+
T Consensus 70 ~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~ 125 (210)
T cd03129 70 NDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAA 125 (210)
T ss_pred CCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHH
Confidence 44788899999999998631 1121 33467888888999998776543
No 417
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.28 E-value=82 Score=30.35 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCc-ccC--CcceEEEee--cCCCcccc-------CCCCCCcEEEe
Q 044542 94 APGGMERHASTLYHALAARGHEIHVFTAPSDRKPHND-VHQ--GNLHVHFAA--NDHGSVNL-------NNDGAFDYVHT 161 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-~~~--~~~~v~~~~--~~~~~~~~-------~~~~~~DiI~~ 161 (465)
..+|-.+.+..++.+++++|+.+-++|.+.-.....+ +.. ....+.++. ........ .+++++|+|++
T Consensus 110 qG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIv 189 (483)
T KOG0780|consen 110 QGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIV 189 (483)
T ss_pred cCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEE
Confidence 4567778899999999999999999998764443332 211 111122221 11111111 17889999999
Q ss_pred cCC
Q 044542 162 ESV 164 (465)
Q Consensus 162 ~~~ 164 (465)
.+.
T Consensus 190 DTS 192 (483)
T KOG0780|consen 190 DTS 192 (483)
T ss_pred eCC
Confidence 875
No 418
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=32.22 E-value=66 Score=28.72 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=23.1
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|+|+++. ..||.+ ..+++.|.+.|++|.++...
T Consensus 1 ~~vlItG-------asg~iG---~~la~~l~~~G~~V~~~~r~ 33 (248)
T PRK10538 1 MIVLVTG-------ATAGFG---ECITRRFIQQGHKVIATGRR 33 (248)
T ss_pred CEEEEEC-------CCchHH---HHHHHHHHHCCCEEEEEECC
Confidence 5666653 235554 46788899999999888654
No 419
>PRK07023 short chain dehydrogenase; Provisional
Probab=32.08 E-value=63 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=22.9
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|+|++... .||.+ ..+++.|.+.|++|.++...
T Consensus 2 ~~vlItGa-------sggiG---~~ia~~l~~~G~~v~~~~r~ 34 (243)
T PRK07023 2 VRAIVTGH-------SRGLG---AALAEQLLQPGIAVLGVARS 34 (243)
T ss_pred ceEEEecC-------CcchH---HHHHHHHHhCCCEEEEEecC
Confidence 56666532 35554 46788889999999887654
No 420
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=31.93 E-value=90 Score=28.90 Aligned_cols=99 Identities=10% Similarity=0.058 Sum_probs=51.2
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC--CcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCc------
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAAR--GHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGS------ 147 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------ 147 (465)
..++|||+++... + +..+..|.++.... +++|.++.+...+....-...+.+...+.......
T Consensus 86 ~~~~~ri~vl~Sg-------~--g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~ 156 (286)
T PRK13011 86 PAARPKVLIMVSK-------F--DHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQ 156 (286)
T ss_pred cccCceEEEEEcC-------C--cccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcCchhhhHHH
Confidence 4567899999753 2 34466777776654 57887776654332211112233333322111110
Q ss_pred -cccCCCCCCcEEEecCCc--hhHHhhhcCCcEEEEecc
Q 044542 148 -VNLNNDGAFDYVHTESVS--LPHWRAKMVPNVAVTWHG 183 (465)
Q Consensus 148 -~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 183 (465)
....+..++|++++.++. +...+-...+.-++.+|.
T Consensus 157 ~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK13011 157 VLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHH 195 (286)
T ss_pred HHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEecc
Confidence 111256789999887652 222222233335778884
No 421
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=31.89 E-value=3.1e+02 Score=27.40 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=52.7
Q ss_pred hHHHHHHHhc--CeEEecccCCCCCcHHHHHHHHc---CCeEEe-cCCCCcce--eeeeeCCceEEeCC-CHHHHHHHHH
Q 044542 349 HQLSEFYNAL--DVFVNPTLRPQGLDLTLIEAMHC---GRTVLT-PNYPSIVR--TVVVNEELGYTFSP-NVKSFVEALE 419 (465)
Q Consensus 349 ~~~~~~~~~a--Dv~v~ps~~~eg~~~~~~EAma~---G~PvI~-s~~gg~~~--e~v~~~~~G~l~~~-d~~~la~~i~ 419 (465)
++....+... |+++.--.-++.-|+.+++.+.. +.|||. |..|.+.. +-+..|..-++..| +++.+...+.
T Consensus 38 ~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ 117 (464)
T COG2204 38 EEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVE 117 (464)
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHH
Confidence 5555555554 66665433356667888887765 689885 55554320 23456778889999 9999999999
Q ss_pred HHHhC
Q 044542 420 LVIRD 424 (465)
Q Consensus 420 ~ll~~ 424 (465)
+.+..
T Consensus 118 ral~~ 122 (464)
T COG2204 118 RALEL 122 (464)
T ss_pred HHHHH
Confidence 99986
No 422
>PRK05993 short chain dehydrogenase; Provisional
Probab=31.86 E-value=72 Score=29.15 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=23.6
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
+|.++|+. ..||.+. .+++.|.+.|++|.+....
T Consensus 4 ~k~vlItG------asggiG~---~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITG------CSSGIGA---YCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCEEEEeC------CCcHHHH---HHHHHHHHCCCEEEEEECC
Confidence 45555653 3366654 5788899999999887654
No 423
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=31.85 E-value=95 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=23.3
Q ss_pred Ch-HHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 96 GG-MERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 96 gG-~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
|| +......+++.|.+.|++|+++.+...
T Consensus 8 Gsiaa~ka~~lir~L~~~g~~V~vv~T~~A 37 (181)
T TIGR00421 8 GASGVIYGIRLLEVLKEAGVEVHLVISDWA 37 (181)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECccH
Confidence 44 345678999999999999999988753
No 424
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=31.63 E-value=1.2e+02 Score=27.51 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 96 GGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
-|-.+.+.+|+.+|+++|++|.++-.+...
T Consensus 12 vGKTT~~~nLA~~La~~G~kVlliD~Dpq~ 41 (270)
T cd02040 12 IGKSTTTQNLSAALAEMGKKVMIVGCDPKA 41 (270)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 344567889999999999999999877653
No 425
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.50 E-value=1.5e+02 Score=22.05 Aligned_cols=39 Identities=5% Similarity=0.088 Sum_probs=27.1
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
..||+++|.. + -+....+..+-+.+.++|.++.+.....
T Consensus 3 ~~~ILl~C~~-----G-~sSS~l~~k~~~~~~~~gi~~~v~a~~~ 41 (95)
T TIGR00853 3 ETNILLLCAA-----G-MSTSLLVNKMNKAAEEYGVPVKIAAGSY 41 (95)
T ss_pred ccEEEEECCC-----c-hhHHHHHHHHHHHHHHCCCcEEEEEecH
Confidence 4589999863 2 1234456677777788899988877664
No 426
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=31.50 E-value=3.7e+02 Score=25.88 Aligned_cols=111 Identities=10% Similarity=0.121 Sum_probs=63.6
Q ss_pred EEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEeccc-
Q 044542 288 LVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTL- 366 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~- 366 (465)
+.|+..|.. +...++|...|.+++-++ -++. +.++-.++.+.+.+..+..+.++.--.
T Consensus 231 vtIia~G~~-----v~~Al~Aa~~L~~~GI~v--~VId--------------~~~ikPlD~~~l~~~~~~t~~vvtvEE~ 289 (356)
T PLN02683 231 VTIVAFSKM-----VGYALKAAEILAKEGISA--EVIN--------------LRSIRPLDRDTINASVRKTNRLVTVEEG 289 (356)
T ss_pred EEEEEccHH-----HHHHHHHHHHHHhcCCCE--EEEE--------------CCCCCccCHHHHHHHHhhcCeEEEEeCC
Confidence 566566653 445677777776543333 3322 344556777888899988887765321
Q ss_pred -CCCCCcHHHHHHHHcC------CeEEec---CCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhC
Q 044542 367 -RPQGLDLTLIEAMHCG------RTVLTP---NYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRD 424 (465)
Q Consensus 367 -~~eg~~~~~~EAma~G------~PvI~s---~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~ 424 (465)
...|+|-.+.|.++-. .|+.-- |.+.-....+++ ..+ ++++.+++++.+++..
T Consensus 290 ~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le~----~~~-p~~~~i~~a~~~~~~~ 352 (356)
T PLN02683 290 WPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLER----LAL-PQVEDIVRAAKRACYR 352 (356)
T ss_pred CcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHHH----hhC-CCHHHHHHHHHHHHHh
Confidence 1357888999888654 355432 221111011110 112 2788888888888754
No 427
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.43 E-value=1e+02 Score=28.44 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=28.7
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEe
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFT 120 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 120 (465)
|||+++.+. ........+..+++.|.++|++|.+..
T Consensus 1 m~v~iv~~~-----~k~~~~~~~~~I~~~L~~~g~~v~v~~ 36 (277)
T PRK03708 1 MRFGIVARR-----DKEEALKLAYRVYDFLKVSGYEVVVDS 36 (277)
T ss_pred CEEEEEecC-----CCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 799999763 335566678889999999999999864
No 428
>PRK13236 nitrogenase reductase; Reviewed
Probab=31.34 E-value=1.5e+02 Score=27.51 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=32.4
Q ss_pred CCCceeEEEEeCCCCCCCCCChHH--HHHHHHHHHHHhCCcEEEEEeCCCCCC
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGME--RHASTLYHALAARGHEIHVFTAPSDRK 126 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~~ 126 (465)
+...||++-+.. .||.+ ..+.+|+-+|+++|++|.++-.+....
T Consensus 2 ~~~~~~~~~~~G-------KGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~ 47 (296)
T PRK13236 2 TDENIRQIAFYG-------KGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKAD 47 (296)
T ss_pred CCcCceEEEEEC-------CCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 445677777742 35554 567899999999999999997776543
No 429
>PLN02427 UDP-apiose/xylose synthase
Probab=31.28 E-value=74 Score=30.81 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=25.7
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC-CcEEEEEeCC
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAAR-GHEIHVFTAP 122 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~ 122 (465)
.-++|||++. ||.+-.=..+++.|.++ |++|..+...
T Consensus 11 ~~~~~~VlVT----------GgtGfIGs~lv~~L~~~~g~~V~~l~r~ 48 (386)
T PLN02427 11 PIKPLTICMI----------GAGGFIGSHLCEKLMTETPHKVLALDVY 48 (386)
T ss_pred cccCcEEEEE----------CCcchHHHHHHHHHHhcCCCEEEEEecC
Confidence 4456898876 33344455788999988 6999888643
No 430
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=31.22 E-value=2.7e+02 Score=25.56 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=60.1
Q ss_pred HHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCc--HHHHHHHHcCCeEE
Q 044542 309 FSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLD--LTLIEAMHCGRTVL 386 (465)
Q Consensus 309 ~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~--~~~~EAma~G~PvI 386 (465)
...+.+..+.-+..++|.+...+.++.++ +.....- +. .. .|++++-....+++- ...+-+.+.|.|.|
T Consensus 82 ~~~l~~~~~~~kv~viG~~~l~~~l~~~G--~~~~~~~--~~-~~----~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI 152 (269)
T COG0647 82 ADYLAKQKPGKKVYVIGEEGLKEELEGAG--FELVDEE--EP-AR----VDAVVVGLDRTLTYEKLAEALLAIAAGAPFI 152 (269)
T ss_pred HHHHHhhCCCCEEEEECCcchHHHHHhCC--cEEeccC--CC-Cc----ccEEEEecCCCCCHHHHHHHHHHHHcCCcEE
Confidence 33444445667899999887778777765 2222211 11 01 677777443222322 24566778999999
Q ss_pred ecCCCCcceeeeeeCCceEEeCCCHHHHHHHHHHHHhC
Q 044542 387 TPNYPSIVRTVVVNEELGYTFSPNVKSFVEALELVIRD 424 (465)
Q Consensus 387 ~s~~gg~~~e~v~~~~~G~l~~~d~~~la~~i~~ll~~ 424 (465)
+++- +.....+.|+.. +..+++..++.+-..
T Consensus 153 ~tNp-----D~~~p~~~g~~p--gaGai~~~~~~~tg~ 183 (269)
T COG0647 153 ATNP-----DLTVPTERGLRP--GAGAIAALLEQATGR 183 (269)
T ss_pred EeCC-----CccccCCCCCcc--CcHHHHHHHHHhhCC
Confidence 9984 444445566333 678888888876554
No 431
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=31.10 E-value=1.4e+02 Score=26.78 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=32.5
Q ss_pred ceeEEEEeCC--CCC-CCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKT--WPI-GAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~--~p~-~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
+.++++|... |.. .+...|...=+..|++.|.+.|++|++.....
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt 55 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLT 55 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 4455555543 432 24667888999999999999999998866543
No 432
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=31.05 E-value=2.5e+02 Score=27.31 Aligned_cols=82 Identities=24% Similarity=0.357 Sum_probs=50.7
Q ss_pred ccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHH-hcC-Ce-EEcCCCChhHHHHHHHh--cCeEEecccCCCCCcH
Q 044542 299 DKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAE-LGQ-NV-KVLGALEAHQLSEFYNA--LDVFVNPTLRPQGLDL 373 (465)
Q Consensus 299 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~-l~~-~V-~~~g~v~~~~~~~~~~~--aDv~v~ps~~~eg~~~ 373 (465)
.++.+.+.+..+++. | +.+.+++....+.+++ +.. .+ .+.|. +.+.++... +|+++....-..|. -
T Consensus 36 ~~n~~~l~~q~~~f~---p--~~v~i~~~~~~~~l~~~l~~~~~~v~~G~---~~~~~l~~~~~vD~Vv~Ai~G~aGl-~ 106 (385)
T PRK05447 36 GKNVELLAEQAREFR---P--KYVVVADEEAAKELKEALAAAGIEVLAGE---EGLCELAALPEADVVVAAIVGAAGL-L 106 (385)
T ss_pred CCCHHHHHHHHHHhC---C--CEEEEcCHHHHHHHHHhhccCCceEEECh---hHHHHHhcCCCCCEEEEeCcCcccH-H
Confidence 567777777666662 3 4566665443344443 221 23 34454 678888875 58888865321233 5
Q ss_pred HHHHHHHcCCeEEecC
Q 044542 374 TLIEAMHCGRTVLTPN 389 (465)
Q Consensus 374 ~~~EAma~G~PvI~s~ 389 (465)
..++|+.+|++|...+
T Consensus 107 ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 107 PTLAAIRAGKRIALAN 122 (385)
T ss_pred HHHHHHHCCCcEEEeC
Confidence 6889999999999865
No 433
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=31.02 E-value=38 Score=31.13 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=21.2
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
||||++.. .+..-..|++.|. .+++|...+...
T Consensus 1 M~iLi~G~----------~GqLG~~L~~~l~-~~~~v~a~~~~~ 33 (281)
T COG1091 1 MKILITGA----------NGQLGTELRRALP-GEFEVIATDRAE 33 (281)
T ss_pred CcEEEEcC----------CChHHHHHHHHhC-CCceEEeccCcc
Confidence 67777633 2345567777777 557877776655
No 434
>PRK05693 short chain dehydrogenase; Provisional
Probab=30.88 E-value=65 Score=29.33 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=23.9
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
||+++|+. ..||.++ .+++.|.+.|++|.+.+..
T Consensus 1 mk~vlItG------asggiG~---~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLITG------CSSGIGR---ALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEec------CCChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 56666664 3466654 6778888999999887654
No 435
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=30.87 E-value=1.6e+02 Score=26.77 Aligned_cols=56 Identities=13% Similarity=0.104 Sum_probs=37.1
Q ss_pred CCeEEcCC-CChh---HHHHHHHhcCeEEe--cccCCCCCcHHHHHHHHcCCeEEecCCCCc
Q 044542 338 QNVKVLGA-LEAH---QLSEFYNALDVFVN--PTLRPQGLDLTLIEAMHCGRTVLTPNYPSI 393 (465)
Q Consensus 338 ~~V~~~g~-v~~~---~~~~~~~~aDv~v~--ps~~~eg~~~~~~EAma~G~PvI~s~~gg~ 393 (465)
++|.+.|. +|.+ ...+.+..||++|. +|..-.+...-+-+|...|.|+|.-+....
T Consensus 181 P~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t 242 (260)
T cd01409 181 PDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPT 242 (260)
T ss_pred CCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCC
Confidence 77888876 4543 35667788999887 343222333344568889999998876543
No 436
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=30.82 E-value=1.1e+02 Score=28.45 Aligned_cols=28 Identities=25% Similarity=0.200 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 96 GGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
||.+-.=..+++.|.++||+|.++....
T Consensus 11 GatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 11 GASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 3334445578899999999998887553
No 437
>PRK08177 short chain dehydrogenase; Provisional
Probab=30.78 E-value=76 Score=27.81 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=23.9
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
||.++|+. ..||.++ .+++.|.+.|++|.++....
T Consensus 1 ~k~vlItG------~sg~iG~---~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 1 KRTALIIG------ASRGLGL---GLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred CCEEEEeC------CCchHHH---HHHHHHHhCCCEEEEEeCCC
Confidence 45555553 2355544 57888899999998887654
No 438
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=30.74 E-value=81 Score=31.73 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=30.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
.+|++..+ ..|.-..+..+++.|+++||+|++++.....
T Consensus 7 ~~il~~~p-------~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~ 45 (496)
T KOG1192|consen 7 HNILVPFP-------GQSHLNPMLQLAKRLAERGHNVTVVTPSFNA 45 (496)
T ss_pred eeEEEECC-------cccHHHHHHHHHHHHHHcCCceEEEEeechh
Confidence 35666643 3677788999999999999999999987643
No 439
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=30.72 E-value=1.1e+02 Score=28.79 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=21.7
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|||+++... .+.....++|.+.||++..+...
T Consensus 1 mkIvf~G~~-----------~~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTP-----------EFAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCC-----------HHHHHHHHHHHHCCCcEEEEECC
Confidence 799998653 24556677777778887755543
No 440
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=30.58 E-value=1.1e+02 Score=29.00 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=30.6
Q ss_pred CceeEEEEeCCCCCCCCCChHH-HHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGME-RHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.+|||+++..... .-.-+. .....++++|.+.||+|..+....
T Consensus 2 ~~~~i~vl~GG~S---~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 2 MKMRVALLFGGRS---AEHEVSLVSAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CCcEEEEEeCCCC---CcchhhHHHHHHHHHHhcccCCEEEEEEECC
Confidence 3679999986542 112222 456789999999999999887654
No 441
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=30.35 E-value=95 Score=28.19 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=31.6
Q ss_pred hHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEEecCCCCc
Q 044542 349 HQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVLTPNYPSI 393 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI~s~~gg~ 393 (465)
+++.+++..+|+++.-+. ++...-.+..|+..|+|||...+|-.
T Consensus 52 ~dl~~ll~~~DvVid~t~-p~~~~~~~~~al~~G~~vvigttG~s 95 (257)
T PRK00048 52 DDLEAVLADADVLIDFTT-PEATLENLEFALEHGKPLVIGTTGFT 95 (257)
T ss_pred CCHHHhccCCCEEEECCC-HHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 567777778999996553 34445567889999999998755433
No 442
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=30.34 E-value=1.2e+02 Score=24.11 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=25.0
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.+|||.||... ..| ..|+++|.+.||+|.-+....
T Consensus 9 ~~l~I~iIGaG-----rVG------~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 9 ARLKIGIIGAG-----RVG------TALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp ---EEEEECTS-----CCC------CHHHHHHHHTTSEEEEESSCH
T ss_pred CccEEEEECCC-----HHH------HHHHHHHHHCCCeEEEEEeCC
Confidence 46899999763 333 479999999999998877654
No 443
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.15 E-value=85 Score=27.89 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=23.7
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.++|+++.. .||.+ ..+++.|.++|++|.++....
T Consensus 5 ~~~vlItGa-------sg~iG---~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 5 GKVAIVTGA-------SSGIG---EGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CcEEEEECC-------CChHH---HHHHHHHHHCCCEEEEEeCCH
Confidence 345666532 35554 478888999999988876654
No 444
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=30.11 E-value=45 Score=38.03 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=33.1
Q ss_pred ccccccCCCCCceeEEEEeCCCCCCCCCChH------HHHHHHHHHHHHhCCcEEE
Q 044542 68 WNKLCFGPTFEKLKLAVFSKTWPIGAAPGGM------ERHASTLYHALAARGHEIH 117 (465)
Q Consensus 68 ~~~l~~~~~~~~mkIl~v~~~~p~~~~~gG~------~~~~~~l~~~L~~~G~~V~ 117 (465)
|-+|.-.+... .||++|..+||++...=|. -..+.++.+.|++.||+|.
T Consensus 501 w~~LR~k~n~e-KKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 555 (1353)
T PLN03241 501 WVSLRKTPPSE-RKVAVMLYGFPPGVGATGTAALLNVPKSLENLLRRLRDEGYDLG 555 (1353)
T ss_pred HHHHccCChhh-CEEEEEecCCCCCCCcceeecccCcHHHHHHHHHHHHHcCCCcC
Confidence 44444332233 4999999999875433231 2357889999999999994
No 445
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=30.00 E-value=4.2e+02 Score=24.32 Aligned_cols=83 Identities=11% Similarity=0.169 Sum_probs=47.4
Q ss_pred CCeEEcCC-CChh---HHHHHHHhcCeEEe--cccCCCCCcHHHHHHHHcCCeEEecCCCCcceeeeeeCCceEEeCCCH
Q 044542 338 QNVKVLGA-LEAH---QLSEFYNALDVFVN--PTLRPQGLDLTLIEAMHCGRTVLTPNYPSIVRTVVVNEELGYTFSPNV 411 (465)
Q Consensus 338 ~~V~~~g~-v~~~---~~~~~~~~aDv~v~--ps~~~eg~~~~~~EAma~G~PvI~s~~gg~~~e~v~~~~~G~l~~~d~ 411 (465)
++|.+.|. +|.+ ...+.++.||++|. +|..-.+...-+..|...|.|+|.-+.+... ..+....+.+..+.
T Consensus 176 P~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~---~~~~~~d~~i~~~~ 252 (271)
T PTZ00409 176 PNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTY---ITNRISDYHVRAKF 252 (271)
T ss_pred CcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCC---CCCccccEEEECcH
Confidence 67777665 4643 44567788999887 3432222222333477889999987765432 11112345555566
Q ss_pred HHHHHHHHHHHhC
Q 044542 412 KSFVEALELVIRD 424 (465)
Q Consensus 412 ~~la~~i~~ll~~ 424 (465)
.++.. +..+++.
T Consensus 253 ~~~~~-~~~~~~~ 264 (271)
T PTZ00409 253 SELAQ-ISDILKG 264 (271)
T ss_pred HHHHH-HHHHhcc
Confidence 66664 3345544
No 446
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=29.97 E-value=3.6e+02 Score=23.13 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=22.0
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAAR 112 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~ 112 (465)
+..+++++... ||...-+.+|.++|.+.
T Consensus 37 ~s~~~lVvlGS-------GGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 37 KSLSTLVVLGS-------GGHTGEMLRLLEALQDL 64 (211)
T ss_pred CcceEEEEEcC-------CCcHHHHHHHHHHHHhh
Confidence 34578888653 88888899999999776
No 447
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.90 E-value=5.1e+02 Score=24.88 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=55.9
Q ss_pred EeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeC-----------CcchhHHHHhc-----CCe-EEcCCCChhHHHHH
Q 044542 292 VAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGT-----------GPWGRRYAELG-----QNV-KVLGALEAHQLSEF 354 (465)
Q Consensus 292 ~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-----------g~~~~~~~~l~-----~~V-~~~g~v~~~~~~~~ 354 (465)
.+| -..-..-+.+++..+.+++. ..+++.-|. |...+.++-|. -.+ .+..-.+.+++..+
T Consensus 105 IAG-PCsIEs~eq~l~~A~~lk~~--g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~ 181 (352)
T PRK13396 105 VAG-PCSVENEEMIVETAKRVKAA--GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITEVMDAADLEKI 181 (352)
T ss_pred EEe-CCcccCHHHHHHHHHHHHHc--CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHH
Confidence 555 34456677788888888775 344555442 11122222221 222 23333455677777
Q ss_pred HHhcCeEEecccCCCCCcHHHHHHH-HcCCeEEecCC
Q 044542 355 YNALDVFVNPTLRPQGLDLTLIEAM-HCGRTVLTPNY 390 (465)
Q Consensus 355 ~~~aDv~v~ps~~~eg~~~~~~EAm-a~G~PvI~s~~ 390 (465)
...+|++-.+|..-.+ ..++++. ..|+||+.++-
T Consensus 182 ~~~~d~lqIga~~~~n--~~LL~~va~t~kPVllk~G 216 (352)
T PRK13396 182 AEVADVIQVGARNMQN--FSLLKKVGAQDKPVLLKRG 216 (352)
T ss_pred HhhCCeEEECcccccC--HHHHHHHHccCCeEEEeCC
Confidence 7779999999954344 4556666 67999998763
No 448
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=29.85 E-value=62 Score=31.33 Aligned_cols=35 Identities=9% Similarity=0.222 Sum_probs=25.3
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
..+||+++. |.+..-..++..|.+.||+|+++...
T Consensus 97 ~~~~I~IiG----------G~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVG----------GKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEc----------CCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 346899884 22233346899999999999998753
No 449
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=29.73 E-value=2e+02 Score=27.23 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCC
Q 044542 94 APGGMERHASTLYHALAARGHEIHVFTAPSDRK 126 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 126 (465)
..|+.+.+++.|++++.++|++|.|+-.+.-..
T Consensus 85 ~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~ 117 (345)
T COG0429 85 EGSSNSPYARGLMRALSRRGWLVVVFHFRGCSG 117 (345)
T ss_pred CCCCcCHHHHHHHHHHHhcCCeEEEEecccccC
Confidence 446666799999999999999999998776443
No 450
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=29.54 E-value=81 Score=29.20 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCcEEEEEeCCCCCC
Q 044542 101 HASTLYHALAARGHEIHVFTAPSDRK 126 (465)
Q Consensus 101 ~~~~l~~~L~~~G~~V~v~~~~~~~~ 126 (465)
.=..|++.|.++||+|..+.......
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~ 37 (314)
T COG0451 12 IGSHLVERLLAAGHDVRGLDRLRDGL 37 (314)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCccc
Confidence 34689999999999999999765443
No 451
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=29.45 E-value=71 Score=29.74 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=26.9
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|||++++.+- . ......+.+++.++||+|.++....
T Consensus 1 m~~~i~~~~~----s----~~s~~~~~~a~~~~g~~v~~i~~~~ 36 (300)
T PRK10446 1 MKIAILSRDG----T----LYSCKRLREAAIQRGHLVEILDPLS 36 (300)
T ss_pred CeEEEEecCC----c----chhHHHHHHHHHHcCCeEEEEehHH
Confidence 7899998652 1 1234588999999999999997553
No 452
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=29.39 E-value=70 Score=29.69 Aligned_cols=33 Identities=24% Similarity=0.495 Sum_probs=24.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|||+++.. |.++ ..++..|.+.||+|+++....
T Consensus 1 m~I~IiG~--------G~~G---~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 1 MKIAILGA--------GAIG---GLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred CEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECCh
Confidence 68888853 3333 357778888999999998643
No 453
>PRK07236 hypothetical protein; Provisional
Probab=29.38 E-value=59 Score=31.53 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=27.3
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.|.+++|+||... .+| ..++..|++.|++|+|+-...
T Consensus 3 ~~~~~~ViIVGaG------~aG-----l~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 3 HMSGPRAVVIGGS------LGG-----LFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCCCeEEEECCC------HHH-----HHHHHHHHhCCCCEEEEecCC
Confidence 3456799998532 233 467888999999999998654
No 454
>PRK07060 short chain dehydrogenase; Provisional
Probab=29.12 E-value=1e+02 Score=27.21 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 96 GGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
||.+. .+++.|.++|++|.++...
T Consensus 19 g~iG~---~~a~~l~~~g~~V~~~~r~ 42 (245)
T PRK07060 19 SGIGR---ACAVALAQRGARVVAAARN 42 (245)
T ss_pred chHHH---HHHHHHHHCCCEEEEEeCC
Confidence 55544 5678888899998887654
No 455
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=29.11 E-value=1.7e+02 Score=26.36 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=29.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
+||.++... ...-|-......++.+|+++|..|.++-.++.
T Consensus 2 ~~i~~i~~~----KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 2 AKIHMVLQG----KGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred CeEEEEecC----CCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 466666653 23345556788999999999999988876643
No 456
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=29.00 E-value=1.2e+02 Score=28.45 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCcEEEEEeCCC
Q 044542 101 HASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 101 ~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.-..+++.|.+.|++|.++....
T Consensus 17 IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 17 IASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCC
Confidence 34578889999999998776443
No 457
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=28.92 E-value=79 Score=30.13 Aligned_cols=35 Identities=11% Similarity=-0.029 Sum_probs=25.4
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
++|||++. ||.+-.-..|++.|.++|++|+.+...
T Consensus 14 ~~~~vlVt----------GatGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 14 APKRWLIT----------GVAGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred cCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34687776 444445567999999999999888654
No 458
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=28.92 E-value=69 Score=22.68 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCcEEEEEeCCCCCC
Q 044542 101 HASTLYHALAARGHEIHVFTAPSDRK 126 (465)
Q Consensus 101 ~~~~l~~~L~~~G~~V~v~~~~~~~~ 126 (465)
...+++..|++.|.+|+++...+.-.
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccchhh
Confidence 46789999999999999999887544
No 459
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=28.73 E-value=57 Score=29.48 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=26.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRK 126 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 126 (465)
|+|+++.. .+..-..+++.|.++||+|.+.+......
T Consensus 1 ~~ilV~Ga----------tG~~G~~~~~~L~~~~~~v~~~~r~~~~~ 37 (275)
T COG0702 1 MKILVTGA----------TGFVGGAVVRELLARGHEVRAAVRNPEAA 37 (275)
T ss_pred CeEEEEec----------ccchHHHHHHHHHhCCCEEEEEEeCHHHH
Confidence 57777643 23334468888888999999999886543
No 460
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=28.60 E-value=1.3e+02 Score=31.67 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
.+.++||+++++. |.....| +-.....|.++||+|+|++.....
T Consensus 366 ~~~~~rvLv~spH-PDDevi~-----~GGTlarl~~~G~~V~vv~~TsG~ 409 (652)
T PRK02122 366 LPYPKRVIIFSPH-PDDDVIS-----MGGTFRRLVEQGHDVHVAYQTSGN 409 (652)
T ss_pred ccCCceEEEEEeC-CCchHhh-----hHHHHHHHHHCCCcEEEEEecCCc
Confidence 4556899999985 4322222 223446678899999998766543
No 461
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=28.55 E-value=52 Score=30.77 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=24.7
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.|||+++.. |+++.+ ++-.|.+.|++|+++....
T Consensus 2 ~m~I~IiGa--------GaiG~~---~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGA--------GSLGSL---WACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECC--------CHHHHH---HHHHHHhCCCCeEEEEech
Confidence 579999854 555543 4555678899999998754
No 462
>PRK09072 short chain dehydrogenase; Provisional
Probab=28.53 E-value=98 Score=27.87 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCcEEEEEeCC
Q 044542 102 ASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 102 ~~~l~~~L~~~G~~V~v~~~~ 122 (465)
-..+++.|.++|++|.++...
T Consensus 18 G~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 18 GQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred HHHHHHHHHHCCCEEEEEECC
Confidence 457888899999999888754
No 463
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=28.52 E-value=1.1e+02 Score=31.21 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=27.4
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
-||++++.. .+.||-+. -+++.|...|++|.|+....
T Consensus 136 ~~VlVlcGp----GNNGGDGL---VaAR~L~~~G~~V~V~~~~~ 172 (544)
T PLN02918 136 SRVLAICGP----GNNGGDGL---VAARHLHHFGYKPFVCYPKR 172 (544)
T ss_pred CEEEEEECC----CcCHHHHH---HHHHHHHHCCCceEEEEcCC
Confidence 379998874 46677644 46678889999999998543
No 464
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=28.51 E-value=1.2e+02 Score=25.37 Aligned_cols=74 Identities=14% Similarity=0.273 Sum_probs=45.6
Q ss_pred hHHHHHHHhcCeEEeccc-----CCCCCcHHHHHHHHcCCeEEecCC-----CCcceeeeeeCCceEE-eCC-CHHHHHH
Q 044542 349 HQLSEFYNALDVFVNPTL-----RPQGLDLTLIEAMHCGRTVLTPNY-----PSIVRTVVVNEELGYT-FSP-NVKSFVE 416 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~-----~~eg~~~~~~EAma~G~PvI~s~~-----gg~~~e~v~~~~~G~l-~~~-d~~~la~ 416 (465)
..+...+..||+.+.--. ..-.|.-.+-|.|-+++|+|++=. +... + +.....-++ +++ |-+.+..
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~-~-ik~~~~v~v~lt~~NR~~i~~ 169 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQ-R-IKKLGGVYVFLTPENRNRILN 169 (179)
T ss_pred HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHH-H-hhhcCCEEEEEccchhhHHHH
Confidence 346667777899987211 112355577788999999998633 2221 2 233333344 666 7778887
Q ss_pred HHHHHHhC
Q 044542 417 ALELVIRD 424 (465)
Q Consensus 417 ~i~~ll~~ 424 (465)
.|..++..
T Consensus 170 ~Il~~L~~ 177 (179)
T COG1618 170 EILSVLKG 177 (179)
T ss_pred HHHHHhcc
Confidence 77777664
No 465
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.38 E-value=1e+02 Score=27.16 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCcEEEEEeCC
Q 044542 102 ASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 102 ~~~l~~~L~~~G~~V~v~~~~ 122 (465)
-..+++.|.+.|++|.++...
T Consensus 20 G~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 20 GRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 457888899999998887654
No 466
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=28.38 E-value=1.9e+02 Score=24.07 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=30.8
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|+|+.++.. ...|-.+.+..++..|...|+.|-++-...
T Consensus 1 m~vi~i~G~-----~gsGKTTli~~L~~~l~~~g~~V~~iK~~~ 39 (159)
T cd03116 1 MKVIGFVGY-----SGSGKTTLLEKLIPALSARGLRVAVIKHDH 39 (159)
T ss_pred CeEEEEECC-----CCCCHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 566666653 468889999999999999999988776544
No 467
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=28.29 E-value=65 Score=29.97 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=23.0
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTA 121 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 121 (465)
|||+++.. |++ -..++..|++.||+|.+++.
T Consensus 1 mkI~IiG~--------G~i---G~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA--------GAV---GGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECC--------CHH---HHHHHHHHHHCCCceEEEec
Confidence 78998853 333 23577778888999999986
No 468
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=28.23 E-value=1.2e+02 Score=27.64 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=27.9
Q ss_pred eeEEEEeCCCCCCCCCChHH--HHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGME--RHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
|+|++. . .||.+ +.+.+|+.+|+++|++|.++-.+..
T Consensus 1 ~~i~~~-g-------KGGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 1 MILAVY-G-------KGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred CEEEEE-c-------CCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 677776 2 25544 5678999999999999999977654
No 469
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=28.17 E-value=1.5e+02 Score=26.89 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=24.7
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 82 LAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 82 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
|.+|.++ ...-|-.+...+++-+|++.|+.|-++-.+..
T Consensus 2 iIvV~sg----KGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~ 40 (261)
T PF09140_consen 2 IIVVGSG----KGGVGKSTVAVNLAVALARMGKKVGLLDLDIR 40 (261)
T ss_dssp EEEEE-S----STTTTHHHHHHHHHHHHHCTT--EEEEE--TT
T ss_pred EEEEecC----CCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4455543 23345567889999999999999999987654
No 470
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=28.15 E-value=1.4e+02 Score=25.11 Aligned_cols=83 Identities=10% Similarity=0.181 Sum_probs=52.5
Q ss_pred ccccccCCCCCCcEEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHH
Q 044542 275 RFPEKLGVPANVSLVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEF 354 (465)
Q Consensus 275 ~~r~~~g~~~~~~~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~ 354 (465)
..|.-+-+.++.++.+.+.=-....+|.+.+++++..|.-... +- ++..-.|.. ++.|.+++.++.||...+
T Consensus 130 T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiLRvidsLqlt~~--k~-VaTP~nWkp-----g~~vmilPtV~~eeakkl 201 (224)
T KOG0854|consen 130 TVRAVFVIDPDKKIRLSFLYPSTTGRNFDEILRVIDSLQLTDK--KG-VATPVNWKP-----GDKVMILPTVSDEEAKKL 201 (224)
T ss_pred eEEEEEEECCCceEEEEEEcccccCcCHHHHHHHHHHHhhhcc--cc-cccccccCC-----CCceEEcCcCChHHHHHh
Confidence 3455555556666666555555668899999999887754211 11 333333322 268899999999998888
Q ss_pred HH-hcCeEEecc
Q 044542 355 YN-ALDVFVNPT 365 (465)
Q Consensus 355 ~~-~aDv~v~ps 365 (465)
+- ..+-.=+||
T Consensus 202 Fp~gf~t~~lPS 213 (224)
T KOG0854|consen 202 FPKGFNTIELPS 213 (224)
T ss_pred cccccceecCCC
Confidence 75 455555555
No 471
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=28.07 E-value=76 Score=29.64 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=23.6
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|+|+++.. .|+. -..+++.|.+.|++|.++....
T Consensus 1 ~~vlItG~-------~G~i---G~~l~~~L~~~g~~V~~~~r~~ 34 (328)
T TIGR03466 1 MKVLVTGA-------TGFV---GSAVVRLLLEQGEEVRVLVRPT 34 (328)
T ss_pred CeEEEECC-------ccch---hHHHHHHHHHCCCEEEEEEecC
Confidence 46766532 2444 3468888999999999888654
No 472
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=28.00 E-value=1.6e+02 Score=24.87 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHHHHHHhCCcEEEEEeCCCCC
Q 044542 94 APGGMERHASTLYHALAARGHEIHVFTAPSDR 125 (465)
Q Consensus 94 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 125 (465)
+..|-...+..|+.+|+++|+.|.++-.+...
T Consensus 8 GG~GKTt~a~~la~~la~~g~~VlliD~D~~~ 39 (195)
T PF01656_consen 8 GGVGKTTIAANLAQALARKGKKVLLIDLDPQA 39 (195)
T ss_dssp TTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS
T ss_pred CCccHHHHHHHHHhccccccccccccccCccc
Confidence 34566678889999999999999999887643
No 473
>COG1429 CobN Cobalamin biosynthesis protein CobN and related Mg-chelatases [Coenzyme metabolism]
Probab=27.98 E-value=68 Score=36.82 Aligned_cols=51 Identities=27% Similarity=0.413 Sum_probs=36.5
Q ss_pred eccccccCCCCCceeEEEEeCCCCCCCCCCh------HHHHHHHHHHHHHhCCcEEEE
Q 044542 67 SWNKLCFGPTFEKLKLAVFSKTWPIGAAPGG------MERHASTLYHALAARGHEIHV 118 (465)
Q Consensus 67 ~~~~l~~~~~~~~mkIl~v~~~~p~~~~~gG------~~~~~~~l~~~L~~~G~~V~v 118 (465)
.|-+|...+...| ||++|-..||++...=| ....+.++.++|++.||+|.-
T Consensus 368 ~w~~Lr~~pn~eK-kVAii~ynyppgk~~iG~AsyLDvp~Sl~~iL~~L~~~GY~v~~ 424 (1388)
T COG1429 368 RWARLRRKPNAEK-KVAIIYYNYPPGKDNIGTASYLDVPASLVNLLAALREEGYRVGN 424 (1388)
T ss_pred HHHHHhcCCcccC-eEEEEEccCCCCCCccccccccCCHHHHHHHHHHHHHCCCcCCC
Confidence 3666654444434 99999999986544333 235678999999999999886
No 474
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=27.94 E-value=1.5e+02 Score=27.52 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=29.7
Q ss_pred eeEEEEeCCCCCCCCCChHH--HHHHHHHHHHHhCCcEEEEEeCCCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGME--RHASTLYHALAARGHEIHVFTAPSDRK 126 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~~ 126 (465)
|||++.. .||.+ +.+.+|+.+|++.|+.|.++-.++...
T Consensus 1 m~ia~~g--------KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n 41 (290)
T CHL00072 1 MKLAVYG--------KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHD 41 (290)
T ss_pred CeEEEEC--------CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCc
Confidence 6877764 35554 567899999999999999998776543
No 475
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=27.83 E-value=96 Score=23.45 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=9.6
Q ss_pred CCeEEcCC-CChhHHHHHHHhcCeEEe
Q 044542 338 QNVKVLGA-LEAHQLSEFYNALDVFVN 363 (465)
Q Consensus 338 ~~V~~~g~-v~~~~~~~~~~~aDv~v~ 363 (465)
..+.+.|. .+.+++.++.+..++-|+
T Consensus 63 ~~iIltg~~~~~~~v~~la~~~~i~vi 89 (105)
T PF07085_consen 63 ACIILTGGLEPSEEVLELAKELGIPVI 89 (105)
T ss_dssp CEEEEETT----HHHHHHHHHHT-EEE
T ss_pred CEEEEeCCCCCCHHHHHHHHHCCCEEE
Confidence 33444432 233444444444444444
No 476
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=27.70 E-value=1.1e+02 Score=29.70 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=28.9
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
.+||++.... +.....+..+++.|.+.|++|.++.+...
T Consensus 3 ~k~IllgiTG-------Siaa~~~~~ll~~L~~~g~~V~vv~T~~A 41 (390)
T TIGR00521 3 NKKILLGVTG-------GIAAYKTVELVRELVRQGAEVKVIMTEAA 41 (390)
T ss_pred CCEEEEEEeC-------HHHHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 3578777652 33345678899999999999999987653
No 477
>PRK08655 prephenate dehydrogenase; Provisional
Probab=27.67 E-value=71 Score=31.69 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=23.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
|||+++.. .|++ -..+++.|.+.|++|.++...
T Consensus 1 MkI~IIGG-------~G~m---G~slA~~L~~~G~~V~v~~r~ 33 (437)
T PRK08655 1 MKISIIGG-------TGGL---GKWFARFLKEKGFEVIVTGRD 33 (437)
T ss_pred CEEEEEec-------CCHH---HHHHHHHHHHCCCEEEEEECC
Confidence 68888841 1333 446888889999999888754
No 478
>PLN02572 UDP-sulfoquinovose synthase
Probab=27.60 E-value=1e+02 Score=30.57 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=22.4
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEe
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFT 120 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 120 (465)
.|||++.. ..|+++ ..|++.|.++|++|.++.
T Consensus 47 ~k~VLVTG-------atGfIG---s~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 47 KKKVMVIG-------GDGYCG---WATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCEEEEEC-------CCcHHH---HHHHHHHHHCCCeEEEEe
Confidence 45666552 235554 468899999999999875
No 479
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.44 E-value=1.2e+02 Score=28.18 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=28.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEe
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFT 120 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 120 (465)
|||+++.+. ..-.....+..+++.|.++|++|.+-.
T Consensus 1 m~igii~~~-----~~~~~~~~~~~i~~~l~~~g~~v~~~~ 36 (292)
T PRK01911 1 MKIAIFGQT-----YQESASPYIQELFDELEERGAEVLIEE 36 (292)
T ss_pred CEEEEEeCC-----CCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 799999763 335566778899999999999988854
No 480
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=27.40 E-value=1.6e+02 Score=26.34 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=29.4
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCC
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRK 126 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 126 (465)
.+..++|++|.+. |.....|.. .....+.++|++|.+++......
T Consensus 7 ~~~~~~vL~v~aH-PDDe~~g~g-----gtla~~~~~G~~V~v~~lT~Ge~ 51 (237)
T COG2120 7 MLDPLRVLVVFAH-PDDEEIGCG-----GTLAKLAARGVEVTVVCLTLGEA 51 (237)
T ss_pred cccCCcEEEEecC-CcchhhccH-----HHHHHHHHCCCeEEEEEccCCcc
Confidence 3456799999874 443333433 33444578899999999876543
No 481
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=27.33 E-value=2.5e+02 Score=26.33 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=45.4
Q ss_pred ccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHH-hcCCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHH
Q 044542 297 VRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAE-LGQNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTL 375 (465)
Q Consensus 297 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~-l~~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~ 375 (465)
...|+.+.+.+|++.++++.|+ +.+-|.-.....+.. ... .. +. ... +-..||++|+|.....+...++
T Consensus 193 ~~~~~~~kv~eA~~l~~~~~~~--~~vdG~l~~D~Al~~~~a~-~K--~~--~s~---v~G~AdvLV~Pnl~aGNi~~K~ 262 (303)
T TIGR00651 193 GSGEDVEKVREATRIAKEKRPD--LTIDGELQFDAAFVEKVAE-KK--AP--NSP---VAGSANVFVFPDLDAGNIGYKI 262 (303)
T ss_pred CCCCccHHHHHHHHHHhccCCC--eEEEecCchhhhCCHHHHH-hh--CC--CCc---cCCcCCEEEeCCchHHHHHHHH
Confidence 3467788888888888665555 566675332111100 000 00 00 011 2246899999987656677888
Q ss_pred HHHHHcCCeEEe
Q 044542 376 IEAMHCGRTVLT 387 (465)
Q Consensus 376 ~EAma~G~PvI~ 387 (465)
+|.++ |--.++
T Consensus 263 ~~~~~-~~~~~G 273 (303)
T TIGR00651 263 VQRLG-DADAIG 273 (303)
T ss_pred HHHhc-CCeEEc
Confidence 99886 434443
No 482
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=27.33 E-value=5.4e+02 Score=24.37 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=64.0
Q ss_pred EEEEEeeccccccCHHHHHHHHHHhhhcCCCeEEEEEeCCcchhHHHHhcCCeEEcCCCChhHHHHHHHhcCeEEec--c
Q 044542 288 LVMGVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRYAELGQNVKVLGALEAHQLSEFYNALDVFVNP--T 365 (465)
Q Consensus 288 ~~l~~~Grl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~~~~l~~~V~~~g~v~~~~~~~~~~~aDv~v~p--s 365 (465)
+.|+..|.. ....++|...|.+++-++.++ ++..+-.++.+.+.+..+..+.++.- .
T Consensus 204 itiia~G~~-----v~~al~Aa~~L~~~Gi~~~VI----------------d~~~ikPlD~~~i~~~~~~t~~vv~vEE~ 262 (327)
T CHL00144 204 ITILTYSRM-----RHHVLQAVKVLVEKGYDPEII----------------DLISLKPLDLGTISKSVKKTHKVLIVEEC 262 (327)
T ss_pred EEEEEccHH-----HHHHHHHHHHHHhcCCCEEEE----------------ecCcCCCCCHHHHHHHHHhhCcEEEEECC
Confidence 666666653 445678888876654333332 23445566767788888777665552 1
Q ss_pred cCCCCCcHHHHHHHHcC------CeEEecCCCCcceeeee-eCCceEEeCCCHHHHHHHHHHHHhC
Q 044542 366 LRPQGLDLTLIEAMHCG------RTVLTPNYPSIVRTVVV-NEELGYTFSPNVKSFVEALELVIRD 424 (465)
Q Consensus 366 ~~~eg~~~~~~EAma~G------~PvI~s~~gg~~~e~v~-~~~~G~l~~~d~~~la~~i~~ll~~ 424 (465)
....|+|-.+.|.++-. .|+.--..+.. .+. .+..-.++-.|.+++++++.+++++
T Consensus 263 ~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~---~~~~~~~~~~~~gl~~~~I~~~i~~~l~~ 325 (327)
T CHL00144 263 MKTGGIGAELIAQINEHLFDELDAPIVRLSSQDV---PTPYNGPLEEATVIQPAQIIEAVEQIITN 325 (327)
T ss_pred CCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCC---cCCCCccHHHHhCCCHHHHHHHHHHHHhc
Confidence 12367888888888544 36653322211 111 1111112223888999998888765
No 483
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.96 E-value=84 Score=29.11 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=51.6
Q ss_pred CCCceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhC--CcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCc------
Q 044542 76 TFEKLKLAVFSKTWPIGAAPGGMERHASTLYHALAAR--GHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGS------ 147 (465)
Q Consensus 76 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------ 147 (465)
..++|||+++... + +..+..|.++.... +++|.++.+...+.... ....+..+.........
T Consensus 86 ~~~~~ri~vl~Sg-------~--gsnl~al~~~~~~~~~~~~i~~visn~~~~~~l-A~~~gIp~~~~~~~~~~~~~~~~ 155 (286)
T PRK06027 86 SAERKRVVILVSK-------E--DHCLGDLLWRWRSGELPVEIAAVISNHDDLRSL-VERFGIPFHHVPVTKETKAEAEA 155 (286)
T ss_pred cccCcEEEEEEcC-------C--CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHH-HHHhCCCEEEeccCccccchhHH
Confidence 4567899998753 1 33466777776653 57887777665432222 22222323332211110
Q ss_pred --cccCCCCCCcEEEecCCc--hhHHhhhcCCcEEEEecc
Q 044542 148 --VNLNNDGAFDYVHTESVS--LPHWRAKMVPNVAVTWHG 183 (465)
Q Consensus 148 --~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 183 (465)
....+..++|+|.+.++. +...+-...|.-++.+|.
T Consensus 156 ~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK06027 156 RLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHH 195 (286)
T ss_pred HHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceecCc
Confidence 111267889999987652 222222222335677774
No 484
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=26.95 E-value=1.2e+02 Score=29.88 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=32.3
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
|||+-|+.. ...|-.+.+..|+..|.++|+.|-++=....
T Consensus 1 MkVi~IvG~-----sgSGKTTLiekLI~~L~~rG~rVavIKH~hH 40 (452)
T PRK14495 1 MRVYGIIGW-----KDAGKTGLVERLVAAIAARGFSVSTVKHSHH 40 (452)
T ss_pred CcEEEEEec-----CCCCHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 677766653 5688899999999999999999999875443
No 485
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=26.91 E-value=86 Score=29.44 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=24.1
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|||+++.. |.+ -..++..|.+.||+|+++....
T Consensus 2 mkI~iiG~--------G~m---G~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGA--------GSW---GTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECC--------CHH---HHHHHHHHHhCCCEEEEEECCH
Confidence 79999853 333 3457788888999999887643
No 486
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=26.89 E-value=94 Score=29.37 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=25.1
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.|||+++.. |.+ -..++..|.+.||+|+++....
T Consensus 4 ~m~I~iIG~--------G~m---G~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGA--------GAW---GTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECc--------CHH---HHHHHHHHHHCCCeEEEEeCCH
Confidence 579999843 333 3467888889999999987743
No 487
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=26.76 E-value=4.1e+02 Score=23.01 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=51.1
Q ss_pred hHHHHHHHhcCeEEecccCCC-CCcHHHHHHHHcCCeEEecCCCC-c-cee-eeeeCCceEEeCCCHHHHHHHHHHHHhC
Q 044542 349 HQLSEFYNALDVFVNPTLRPQ-GLDLTLIEAMHCGRTVLTPNYPS-I-VRT-VVVNEELGYTFSPNVKSFVEALELVIRD 424 (465)
Q Consensus 349 ~~~~~~~~~aDv~v~ps~~~e-g~~~~~~EAma~G~PvI~s~~gg-~-~~e-~v~~~~~G~l~~~d~~~la~~i~~ll~~ 424 (465)
.++...++.+.+-+.--...+ ..|-++-+|-..|.|++.-=-+. . .+. .+.+-.+|--...+.+++.+.+..++++
T Consensus 33 ~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~~ 112 (202)
T cd00862 33 DELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLEKNTVVIVRRDTGEKKTVPLAELVEKVPELLDE 112 (202)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhhCCEEEEEEecCCcceEEEHHHHHHHHHHHHHH
Confidence 455566665544333222235 78899999999999987632110 0 001 1222223322222577888888877764
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 044542 425 GPKVLQRKGLACKEHALS 442 (465)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~ 442 (465)
..+.|-++|+++..+
T Consensus 113 ---i~~~l~~~A~~~~~~ 127 (202)
T cd00862 113 ---IQEDLYERALEFRDA 127 (202)
T ss_pred ---HHHHHHHHHHHHHhc
Confidence 445666777766653
No 488
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=26.75 E-value=5e+02 Score=24.03 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 96 GGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 96 gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
||-.| -..+++.|.+.|++|.++....
T Consensus 8 ggd~r-~~~~~~~l~~~g~~v~~~g~~~ 34 (287)
T TIGR02853 8 GGDAR-QLELIRKLEELDAKISLIGFDQ 34 (287)
T ss_pred cccHH-HHHHHHHHHHCCCEEEEEeccc
Confidence 56444 5679999999999999998753
No 489
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=26.68 E-value=1.6e+02 Score=26.28 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=25.8
Q ss_pred eEEEEeCCC-----CCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 81 KLAVFSKTW-----PIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 81 kIl~v~~~~-----p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
|||+|..+. ..+...|=...-+..-...|.+.|++|++.++..
T Consensus 1 ~vL~v~s~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~VdiaS~~g 48 (231)
T cd03147 1 KALIALTSYYGPFYPDGKNTGVFFSEALHPFNVFREAGFEVDFVSETG 48 (231)
T ss_pred CEEEEEcCCcccCCCCCCccccCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 577777642 1111122222234445678889999999999754
No 490
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=26.59 E-value=1.6e+02 Score=25.36 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCcEEEEEeCCCC
Q 044542 103 STLYHALAARGHEIHVFTAPSD 124 (465)
Q Consensus 103 ~~l~~~L~~~G~~V~v~~~~~~ 124 (465)
..+++.|.+.|++|+++.+...
T Consensus 18 ~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 18 MPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred HHHHHHHHhCcCEEEEEEchhH
Confidence 4899999999999999987754
No 491
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=26.54 E-value=7e+02 Score=25.44 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=29.5
Q ss_pred eeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 80 LKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 80 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
||-.+|+..-- ..=|-+.....+...|+.+|+.|..+-.++
T Consensus 1 ~k~i~vtGgv~---s~lgkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (525)
T TIGR00337 1 MKYIFVTGGVV---SSLGKGITAASIGRLLKARGLKVTIIKIDP 41 (525)
T ss_pred CcEEEEcCCcc---cCcchHHHHHHHHHHHHhCCCceEEEeecc
Confidence 47777876531 222445678899999999999999887654
No 492
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.42 E-value=4.6e+02 Score=23.25 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=21.4
Q ss_pred CCeEEcCCCChhHHHHHHHhcCeEEecccCCCCCcHHHHHHHHcCCeEE
Q 044542 338 QNVKVLGALEAHQLSEFYNALDVFVNPTLRPQGLDLTLIEAMHCGRTVL 386 (465)
Q Consensus 338 ~~V~~~g~v~~~~~~~~~~~aDv~v~ps~~~eg~~~~~~EAma~G~PvI 386 (465)
.+..+.+.++ .++.++-+..++.++|.. ..|.=+.+|+.+|.-+|
T Consensus 92 A~FiVsP~~~-~~v~~~~~~~~i~~iPG~---~TpsEi~~A~~~Ga~~v 136 (222)
T PRK07114 92 ANFIVTPLFN-PDIAKVCNRRKVPYSPGC---GSLSEIGYAEELGCEIV 136 (222)
T ss_pred CCEEECCCCC-HHHHHHHHHcCCCEeCCC---CCHHHHHHHHHCCCCEE
Confidence 4444444332 455555555555555532 23444455555554443
No 493
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=26.40 E-value=63 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=24.6
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
..||+++ || +......++.|.+.|++|+|+.+.
T Consensus 13 ~~~vlVv----------GG-G~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVII----------GG-GKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEE----------CC-CHHHHHHHHHHHhCCCEEEEEcCc
Confidence 3478887 33 345678889999999999999543
No 494
>PRK12829 short chain dehydrogenase; Provisional
Probab=26.38 E-value=84 Score=28.23 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=24.0
Q ss_pred CceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCC
Q 044542 78 EKLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 78 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 122 (465)
+.++++++.. .||. -..+++.|.++|++|.++...
T Consensus 10 ~~~~vlItGa-------~g~i---G~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 10 DGLRVLVTGG-------ASGI---GRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CCCEEEEeCC-------CCcH---HHHHHHHHHHCCCEEEEEeCC
Confidence 3456776632 2555 457888999999998777654
No 495
>PRK13054 lipid kinase; Reviewed
Probab=26.38 E-value=1.7e+02 Score=27.29 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=27.8
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
+||+++|.+ | . +|.......+.+.|.+.|+++.+.....
T Consensus 3 ~~~~~~i~N--~---~-~~~~~~~~~~~~~l~~~g~~~~v~~t~~ 41 (300)
T PRK13054 3 FPKSLLILN--G---K-SAGNEELREAVGLLREEGHTLHVRVTWE 41 (300)
T ss_pred CceEEEEEC--C---C-ccchHHHHHHHHHHHHcCCEEEEEEecC
Confidence 457888776 2 2 3345667778889999999988766654
No 496
>PRK07326 short chain dehydrogenase; Provisional
Probab=26.37 E-value=1.1e+02 Score=27.01 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCcEEEEEeCC
Q 044542 102 ASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 102 ~~~l~~~L~~~G~~V~v~~~~ 122 (465)
-..+++.|.+.|++|.++...
T Consensus 19 G~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 19 GFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred HHHHHHHHHHCCCEEEEeeCC
Confidence 446788888899998887643
No 497
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=26.33 E-value=1.7e+02 Score=21.75 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=24.5
Q ss_pred eEEEEeCCCCCCCCCChHHHH-HHHHHHHHHhCCcEEEEEeCC
Q 044542 81 KLAVFSKTWPIGAAPGGMERH-ASTLYHALAARGHEIHVFTAP 122 (465)
Q Consensus 81 kIl~v~~~~p~~~~~gG~~~~-~~~l~~~L~~~G~~V~v~~~~ 122 (465)
||+++|.. +. |.... ...+-+.|.++|.++.+....
T Consensus 4 kILvvCgs-----G~-~TS~m~~~ki~~~l~~~gi~~~v~~~~ 40 (94)
T PRK10310 4 KIIVACGG-----AV-ATSTMAAEEIKELCQSHNIPVELIQCR 40 (94)
T ss_pred eEEEECCC-----ch-hHHHHHHHHHHHHHHHCCCeEEEEEec
Confidence 69999863 22 22333 466778888999998887744
No 498
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=26.30 E-value=1.4e+02 Score=26.99 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=0.0
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCCCCCCCCcccCCcceEEEeecCCCccccCCCCCCcE
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPSDRKPHNDVHQGNLHVHFAANDHGSVNLNNDGAFDY 158 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~Di 158 (465)
+|+|+++ ||... .+.+++.|.+.|++|.+-+...... .........+-......+...+.++.++++
T Consensus 2 ~~~Ilvl----------gGT~e-gr~la~~L~~~g~~v~~Svat~~g~--~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~ 68 (248)
T PRK08057 2 MPRILLL----------GGTSE-ARALARALAAAGVDIVLSLAGRTGG--PADLPGPVRVGGFGGAEGLAAYLREEGIDL 68 (248)
T ss_pred CceEEEE----------echHH-HHHHHHHHHhCCCeEEEEEccCCCC--cccCCceEEECCCCCHHHHHHHHHHCCCCE
Q ss_pred EEecCCchhHHhhhc
Q 044542 159 VHTESVSLPHWRAKM 173 (465)
Q Consensus 159 I~~~~~~~~~~~~~~ 173 (465)
|+=-+..++.....+
T Consensus 69 VIDATHPfA~~is~~ 83 (248)
T PRK08057 69 VIDATHPYAAQISAN 83 (248)
T ss_pred EEECCCccHHHHHHH
No 499
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=26.25 E-value=91 Score=30.69 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=25.4
Q ss_pred ceeEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 044542 79 KLKLAVFSKTWPIGAAPGGMERHASTLYHALAARGHEIHVFTAPS 123 (465)
Q Consensus 79 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 123 (465)
.|||+++...+ .| ..++..|++.||+|+++....
T Consensus 3 ~~kI~VIGlG~-----~G------~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGY-----IG------LPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred ccEEEEECcch-----hh------HHHHHHHHhCCCEEEEEeCCH
Confidence 57999996542 22 368889999999999887543
No 500
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=26.21 E-value=2.8e+02 Score=29.42 Aligned_cols=82 Identities=2% Similarity=-0.008 Sum_probs=51.3
Q ss_pred CeEEcCCCChhHHHHHHHhcCeEEeccc-CCCCCcHHHHHHHHcC------CeEEecCCCCcceeeeeeCCceEEeCC--
Q 044542 339 NVKVLGALEAHQLSEFYNALDVFVNPTL-RPQGLDLTLIEAMHCG------RTVLTPNYPSIVRTVVVNEELGYTFSP-- 409 (465)
Q Consensus 339 ~V~~~g~v~~~~~~~~~~~aDv~v~ps~-~~eg~~~~~~EAma~G------~PvI~s~~gg~~~e~v~~~~~G~l~~~-- 409 (465)
++.++-.++.+-+.+..+..+.+|.--. ...|+|-.+.|.++-. +||..- |++++.+..+....+.+.
T Consensus 600 dlr~ikPLD~e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~i---Gipd~F~~~G~~~~ll~~~G 676 (701)
T PLN02225 600 DARFCKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPI---VLPDGYIEEASPREQLALAG 676 (701)
T ss_pred ecCCCCCCCHHHHHHHHhhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEE---ecCCcCcCCCCHHHHHHHhC
Confidence 3455667787888899999888776311 1268999999998755 344322 333344544443333332
Q ss_pred -CHHHHHHHHHHHHh
Q 044542 410 -NVKSFVEALELVIR 423 (465)
Q Consensus 410 -d~~~la~~i~~ll~ 423 (465)
|++.+++.+.+++.
T Consensus 677 Ldae~I~~~i~~~l~ 691 (701)
T PLN02225 677 LTGHHIAATALSLLG 691 (701)
T ss_pred cCHHHHHHHHHHHHh
Confidence 77777777777664
Done!