BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044543
(962 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 1374 bits (3556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 670/873 (76%), Positives = 729/873 (83%)
Query: 16 SLEEIKKENVDLERIPINEVFEQLKCTREGLSNEEGQKRLVIFGPNXXXXXXXXXXXXXX 75
SLE+IK E VDLE+IPI EVF+QLKC+REGL+ +EG+ R+ IFGPN
Sbjct: 3 SLEDIKNETVDLEKIPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFL 62
Query: 76 GFMWNPLSWVMEXXXXXXXXXXNGGGKPPDWQDFVGIVVLLLINSTISFIEEXXXXXXXX 135
GFMWNPLSWVME NG G+PPDWQDFVGI+ LL+INSTISFIEE
Sbjct: 63 GFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAA 122
Query: 136 XXXXXXXPQTKVLRDGAWREQEASILVPGDVISIKLGDIIPADARLLDGDPLKIDQSALT 195
P+TKVLRDG W EQEA+ILVPGD++SIKLGDIIPADARLL+GDPLK+DQSALT
Sbjct: 123 ALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALT 182
Query: 196 GESLPVTKMPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQEGHFQKVLTA 255
GESLPVTK PG EVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ GHFQKVLTA
Sbjct: 183 GESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA 242
Query: 256 IGNFCICSIAIGMVIEIIVMYPIQHRAYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH 315
IGNFCICSIAIGMVIEIIVMYPIQ R YR+GIDNLLVLLIGGIPIAMPTVLSVTMAIGSH
Sbjct: 243 IGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH 302
Query: 316 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFVKDMDKDTVILYG 375
RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKL+VDKNLVEVF K ++KD V+L+
Sbjct: 303 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFA 362
Query: 376 ARASRVENQDAIDACIVGMLGDAKEARAGITELHFLPFNPVEKRTAITYIDSDGSWHRIS 435
A ASRVENQDAIDA +VGML D KEARAGI E+HFLPFNPV+KRTA+TYID G+WHR+S
Sbjct: 363 AMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVS 422
Query: 436 KGAPEQIIELCNLREDVRNKAHTIIDKFADRGLRSLAVAEQSVPEKTKESPGGPWQFVGL 495
KGAPEQI+EL D+ K +IIDK+A+RGLRSLAVA Q VPEKTKESPG PW+FVGL
Sbjct: 423 KGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGL 482
Query: 496 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQIK 555
LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAI KETGRRLGMGTNMYPSSALLG K
Sbjct: 483 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHK 542
Query: 556 DANISALPVDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKXXXX 615
DAN++++PV+ELIEKADGFAGVFPEHKYEIV+KLQERKHI GMTGDGVNDAPALKK
Sbjct: 543 DANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIG 602
Query: 616 XXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLL 675
IVLTEPGLSVI+SAVLTSRAIFQRMKNYTIYAVSITIRIV GF+L
Sbjct: 603 IAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFML 662
Query: 676 IALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDTWKLKEIFATGIVLGTYLAV 735
IALIW+FDFS FMVLIIAILNDGTIMTISKDRVKPSP PD+WKLKEIFATG+VLG Y A+
Sbjct: 663 IALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQAI 722
Query: 736 MTVLFFWAIHSSTFFSEKFGVRSIRDSPHELTAAVYLQVSIVSQALIFVTRSRSWSFLER 795
MTV+FFWA H + FFS+ FGVRSIRD+ HEL AVYLQVSI+SQALIFVTRSRSWSF+ER
Sbjct: 723 MTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSRSWSFVER 782
Query: 796 PGXXXXXXXXXXQLVATLIAVYANFGFARIHXXXXXXXXXXXLYSIVFYIPLDVLKFIVR 855
PG QL+ATLIAVYAN+ FA+I LYSIV Y PLDV KF +R
Sbjct: 783 PGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIR 842
Query: 856 YALTGKAWDNLLENKTAFTTKKDYGRGEREAQW 888
Y L+GKAW NL ENKTAFT KKDYG+ EREAQW
Sbjct: 843 YILSGKAWLNLFENKTAFTMKKDYGKEEREAQW 875
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 416 bits (1069), Expect = e-116, Method: Compositional matrix adjust.
Identities = 270/800 (33%), Positives = 416/800 (52%), Gaps = 57/800 (7%)
Query: 42 TREGLSNEEGQKRLVIFGPNXXXXXXXXXXXXXXGFMWNPLSWVMEXXXXXXXXXXNGGG 101
TR GL++EE +R +G N GF P+ +VME
Sbjct: 84 TRVGLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLE---- 139
Query: 102 KPPDWQDFVGIVVLLLINSTISFIEEXXXXXXXXXXXXXXXPQTKVLRDGAWREQEASIL 161
DW DF I LLL+N+ + F++E + VLRDG +E EA +
Sbjct: 140 ---DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEV 196
Query: 162 VPGDVISIKLGDIIPADARLLDGDP-LKIDQSALTGESLPVTKMPGDEVFSGSTCKQGEI 220
VPGD++ ++ G IIPAD R++ D L++DQSALTGESL V K GD+VF+ S K+GE
Sbjct: 197 VPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEA 256
Query: 221 EAVVIATGVHTFFGKAAHLVDS-TNQEGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQ 279
V+ ATG +TF G+AA LV++ + GHF +VL IG + + ++I + +
Sbjct: 257 FVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSF--- 313
Query: 280 HRAYRNG-----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMA 334
YR+ ++ L + I G+P+ +P V++ TMA+G+ L+++ AI ++++AIE +A
Sbjct: 314 ---YRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLA 370
Query: 335 GMDVLCSDKTGTLTLNKLTVDKNLVEVFVKDMDKDTVILYGARASRVENQ--DAIDACIV 392
G+++LCSDKTGTLT NKL++ V +D + ++L A+ + + DAID +
Sbjct: 371 GVEILCSDKTGTLTKNKLSLHDPYT---VAGVDPEDLMLTACLAASRKKKGIDAIDKAFL 427
Query: 393 GMLGDAKEARAGITE---LHFLPFNPVEKRTAITYIDSDGSWHRISKGAPEQIIELCN-- 447
L A++ +++ L F PF+PV K+ G KGAP +++
Sbjct: 428 KSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEED 487
Query: 448 --LREDVRNKAHTIIDKFADRGLRSLAVAEQSVPEKTKESPGGPWQFVGLLPLFDPPRHD 505
+ E+V + +FA RG RSL VA ++ G W+ +G++P DPPRHD
Sbjct: 488 HPIPEEVDQAYKNKVAEFATRGFRSLGVA--------RKRGEGSWEILGIMPCMDPPRHD 539
Query: 506 SAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQIKDANISALPVD 565
+ +T+ A LG+++KM+TGD + IA+ET R+LG+GTN+Y ++ LG ++ V
Sbjct: 540 TYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIY-NAERLGLGGGGDMPGSEVY 598
Query: 566 ELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXX 625
+ +E ADGFA VFP+HKY +V LQ+R ++ MTGDGVNDAP+LKK
Sbjct: 599 DFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAA 658
Query: 626 XXXXXIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIY--AVSITIRIVLGFLLIALIWKFD 683
IV PGL I+ A+ TSR IF RM Y +Y A+SI + I LG + L +
Sbjct: 659 RSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAILNRSLN 718
Query: 684 FSPFMVLIIAILNDGTIMTISKDRVKPSPVPDTWKLKEIFATGIVLGTYLAV---MTVLF 740
+V+ IAI D + I+ D S P W L +++ ++LG LAV +TV
Sbjct: 719 IE--LVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLLGVVLAVGTWITVTT 776
Query: 741 FWAIHSSTFFSEKFGVRSIRDSPHELTAAVYLQVSIVSQALIFVTRSRSWSFLERPGXXX 800
+A + + FG + ++LQ+S+ LIF+TR+ + P
Sbjct: 777 MYAQGENGGIVQNFG---------NMDEVLFLQISLTENWLIFITRANGPFWSSIPSWQL 827
Query: 801 XXXXXXXQLVATLIAVYANF 820
++AT ++ F
Sbjct: 828 SGAIFLVDILATCFTIWGWF 847
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 158/670 (23%), Positives = 276/670 (41%), Gaps = 97/670 (14%)
Query: 102 KPPDWQDFVGIVV--LLLINSTISFIEEXXXXXXXXXXXXXXXPQTKVLRDGAWREQEAS 159
+P + ++G+V+ ++++ S+ +E Q V+RDG A
Sbjct: 129 EPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAE 188
Query: 160 ILVPGDVISIKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKMPG----------DEV 209
+V GD++ +K GD IPAD R++ K+D S+LTGES P T+ P +
Sbjct: 189 FVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIA 248
Query: 210 FSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQEGHFQKVLTAIGNFCICSIAIGMV 269
F + C +G VV+ TG T G+ A L + I +A+ +
Sbjct: 249 FFSTNCVEGTARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLG 308
Query: 270 IEIIVMYPIQHRAYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTA 329
+ ++ I ++ + L+ +++ +P + ++V + + + R++++ + K + A
Sbjct: 309 VSFFILSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEA 368
Query: 330 IEEMAGMDVLCSDKTGTLTLNKLTV-----------------------DKN--------- 357
+E + +CSDKTGTLT N++TV DK
Sbjct: 369 VETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSR 428
Query: 358 ---LVEVFVKDMDKDTVILYGARASRVENQDAIDACIVGMLGDAKEARAGITELHFLPFN 414
L V +D V + + ++ A+ CI G + R ++ +PFN
Sbjct: 429 IAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFN 488
Query: 415 PVEKRTAITYIDSDGSWHR---ISKGAPEQIIELCN----------LREDVRNKAHTIID 461
K + + S R + KGAPE+I++ C+ L+ED++
Sbjct: 489 STNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYL 548
Query: 462 KFADRGLRSLAVAEQSVPEKTKESPGGPWQ------------FVGLLPLFDPPRHDSAET 509
+ G R L ++PE K + G P+ FVGL+ + DPPR +
Sbjct: 549 ELGGLGERVLGFCHFALPED-KYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDA 607
Query: 510 IRRALNLGVNVKMITGDQLAIAKETGRRLGM---GTNMYPSSAL-----LGQI--KDA-- 557
+ + + G+ V M+TGD AK + +G+ G A +GQ+ +DA
Sbjct: 608 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKA 667
Query: 558 ---------NISALPVDELIEKADG--FAGVFPEHKYEIVRKLQERKHICGMTGDGVNDA 606
++S +D+++ FA P+ K IV Q + I +TGDGVND+
Sbjct: 668 CVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDS 727
Query: 607 PALKKXXX-XXXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSI 665
PALKK ++L + + IV+ V R IF +K Y ++
Sbjct: 728 PALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTS 787
Query: 666 TIRIVLGFLL 675
I + FL+
Sbjct: 788 NIPEITPFLV 797
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 169 bits (428), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 165/689 (23%), Positives = 287/689 (41%), Gaps = 113/689 (16%)
Query: 102 KPPDWQDFVGIVV--LLLINSTISFIEEXXXXXXXXXXXXXXXPQTKVLRDGAWREQEAS 159
+P + ++G+V+ +++I S+ +E Q V+R+G A
Sbjct: 99 EPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAE 158
Query: 160 ILVPGDVISIKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKMPG----------DEV 209
+V GD++ +K GD IPAD R++ + K+D S+LTGES P T+ P +
Sbjct: 159 EVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIA 218
Query: 210 FSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQEGHFQKVLTAIGNF--CICSIAIG 267
F + C +G +V+ TG T G+ A L ++ EG + I +F I +A+
Sbjct: 219 FFSTNCVEGTARGIVVYTGDRTVMGRIATL--ASGLEGGQTPIAAEIEHFIHIITGVAVF 276
Query: 268 MVIEIIVMYPIQHRAYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRM 327
+ + ++ I + + L+ +++ +P + ++V + + + R++++ + K +
Sbjct: 277 LGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNL 336
Query: 328 TAIEEMAGMDVLCSDKTGTLTLNKLTV-----DKNLVEVFVKD------MDKDTVILYG- 375
A+E + +CSDKTGTLT N++TV D + E + DK +
Sbjct: 337 EAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLAL 396
Query: 376 -------ARASRVENQD----------------AIDACIVGMLGDAKEARAGITELHFLP 412
RA NQ+ A+ CI G KE R T++ +P
Sbjct: 397 SRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIP 456
Query: 413 FNPVEKRTAITYIDSDGSWHR---ISKGAPEQIIELCN----------LREDVRN---KA 456
FN K + + + + R + KGAPE+I++ C+ L E++++ A
Sbjct: 457 FNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNA 516
Query: 457 HTIIDKFADR--GLRSLAVAEQSVPEKTK------ESPGGPWQFVGLLPLFDPPRHDSAE 508
+ + +R G L + ++ PE + P FVGL+ + DPPR +
Sbjct: 517 YLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPD 576
Query: 509 TIRRALNLGVNVKMITGDQLAIAKETGRRLGM---GTNMYPSSAL-----LGQIKDANIS 560
+ + + G+ V M+TGD AK + +G+ G A + Q+ +
Sbjct: 577 AVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAK 636
Query: 561 ALPV------DELIEKADG---------FAGVFPEHKYEIVRKLQERKHICGMTGDGVND 605
A V D E+ D FA P+ K IV Q + I +TGDGVND
Sbjct: 637 ACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVND 696
Query: 606 APALKKXXX-XXXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVS 664
+PA KK ++L + + IV+ V R IF +K Y ++
Sbjct: 697 SPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 756
Query: 665 ITIRIVLGFLLIALIWKFDFSPFMVLIIA 693
I + +PF++ IIA
Sbjct: 757 SNIP--------------EITPFLIFIIA 771
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 164/689 (23%), Positives = 286/689 (41%), Gaps = 113/689 (16%)
Query: 102 KPPDWQDFVGIVV--LLLINSTISFIEEXXXXXXXXXXXXXXXPQTKVLRDGAWREQEAS 159
+P + ++G+V+ +++I S+ +E Q V+R+G A
Sbjct: 93 EPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAE 152
Query: 160 ILVPGDVISIKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKMPG----------DEV 209
+V GD++ +K GD IPAD R++ + K+D S+LTGES P T+ P +
Sbjct: 153 EVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIA 212
Query: 210 FSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQEGHFQKVLTAIGNF--CICSIAIG 267
F + C +G +V+ TG T G+ A L ++ EG + I +F I +A+
Sbjct: 213 FFSTNCVEGTARGIVVYTGDRTVMGRIATL--ASGLEGGQTPIAAEIEHFIHIITGVAVF 270
Query: 268 MVIEIIVMYPIQHRAYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRM 327
+ + ++ I + + L+ +++ +P + ++V + + + R++++ + K +
Sbjct: 271 LGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNL 330
Query: 328 TAIEEMAGMDVLCSDKTGTLTLNKLTV-----DKNLVEVFVKD------MDKDTVILYG- 375
A+E + +CS KTGTLT N++TV D + E + DK +
Sbjct: 331 EAVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLAL 390
Query: 376 -------ARASRVENQD----------------AIDACIVGMLGDAKEARAGITELHFLP 412
RA NQ+ A+ CI G KE R T++ +P
Sbjct: 391 SRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIP 450
Query: 413 FNPVEKRTAITYIDSDGSWHR---ISKGAPEQIIELCN----------LREDVRN---KA 456
FN K + + + + R + KGAPE+I++ C+ L E++++ A
Sbjct: 451 FNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNA 510
Query: 457 HTIIDKFADR--GLRSLAVAEQSVPEKTK------ESPGGPWQFVGLLPLFDPPRHDSAE 508
+ + +R G L + ++ PE + P FVGL+ + DPPR +
Sbjct: 511 YLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPD 570
Query: 509 TIRRALNLGVNVKMITGDQLAIAKETGRRLGM---GTNMYPSSAL-----LGQIKDANIS 560
+ + + G+ V M+TGD AK + +G+ G A + Q+ +
Sbjct: 571 AVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAK 630
Query: 561 ALPV------DELIEKADG---------FAGVFPEHKYEIVRKLQERKHICGMTGDGVND 605
A V D E+ D FA P+ K IV Q + I +TGDGVND
Sbjct: 631 ACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVND 690
Query: 606 APALKKXXX-XXXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVS 664
+PA KK ++L + + IV+ V R IF +K Y ++
Sbjct: 691 SPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 750
Query: 665 ITIRIVLGFLLIALIWKFDFSPFMVLIIA 693
I + +PF++ IIA
Sbjct: 751 SNIP--------------EITPFLIFIIA 765
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 157/667 (23%), Positives = 258/667 (38%), Gaps = 109/667 (16%)
Query: 110 VGIVVLLLINSTISFIEEXXXXXXXXXXXXXXXPQTKVLRDGAWREQEASILVPGDVISI 169
+ ++ ++++ + +E Q V+RDG + A LV GD++ +
Sbjct: 144 LALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEM 203
Query: 170 KLGDIIPADARLLDGDPLKIDQSALTGESLPVTKMPG----------DEVFSGSTCKQGE 219
K GD +PAD R+L K+D S+LTGES P T+ P + F + C +G
Sbjct: 204 KGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGT 263
Query: 220 IEAVVIATGVHTFFGKAAHLVDSTNQEG--------HFQKVLTAIGNFCICSIAIGMVIE 271
+ +V+ TG T G+ A L E HF ++ + +I G
Sbjct: 264 AQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGL------AILFGATFF 317
Query: 272 IIVMYPIQHRAYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIE 331
I+ M + + + +++ +P + ++V +++ + RL+ + + K + A+E
Sbjct: 318 IVAM--CIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVE 375
Query: 332 EMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFVKDMDKDT-------------------VI 372
+ V+CSDKTGTLT N++TV + + D V+
Sbjct: 376 TLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVL 435
Query: 373 LYGARASRVENQDAIDACIVGMLGDAKEA----------------RAGITELHFLPFNPV 416
RA+ QDA+ ++GDA E R ++ +PFN
Sbjct: 436 TLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNST 495
Query: 417 EKRTAITYIDSDGSWHR---ISKGAPEQIIELCN----------LREDVRNKAHTIIDKF 463
K + D R + KGAPE+++E C+ L E R T
Sbjct: 496 NKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSL 555
Query: 464 ADRGLRSLAVAEQSVPEK-----------TKESPGGPWQFVGLLPLFDPPRHDSAETIRR 512
G R L + + EK P F GL+ + DPPR + + +
Sbjct: 556 GGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLK 615
Query: 513 ALNLGVNVKMITGDQLAIAKETGRRLGM---GTNMYPSSALLGQI-------KDA----- 557
G+ V M+TGD AK +G+ G+ A ++ KDA
Sbjct: 616 CRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVI 675
Query: 558 ---NISALPVDELIEKADG-----FAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPAL 609
+ + EL+E FA P+ K IV Q I +TGDGVND+PAL
Sbjct: 676 NGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPAL 735
Query: 610 KKXXX-XXXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIR 668
KK ++L + + IV+ V R IF +K Y ++ I
Sbjct: 736 KKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIP 795
Query: 669 IVLGFLL 675
+ +L+
Sbjct: 796 ELTPYLI 802
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 131/288 (45%), Gaps = 26/288 (9%)
Query: 436 KGAPEQIIELCN----------LREDVRNKAHTIIDKFAD--RGLRSLAVAEQSVPEKTK 483
KGAPE +I+ CN + V+ K ++I ++ LR LA+A + P K +
Sbjct: 516 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 575
Query: 484 E----------SPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 533
E FVG++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 576 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 635
Query: 534 TGRRLGM-GTNM-YPSSALLGQIKDANISALPVDELIEKADGFAGVFPEHKYEIVRKLQE 591
RR+G+ G N A G+ D ++ E +A FA V P HK +IV LQ
Sbjct: 636 ICRRIGIFGENEEVADRAYTGREFD-DLPLAEQREACRRACCFARVEPSHKSKIVEYLQS 694
Query: 592 RKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAI 651
I MTGDGVNDAPALKK +VL + S IV+AV RAI
Sbjct: 695 YDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAI 754
Query: 652 FQRMKNYTIYAVSITI-RIVLGFLLIALIWKFDFSPFMVLIIAILNDG 698
+ MK + Y +S + +V FL AL P +L + ++ DG
Sbjct: 755 YNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 802
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 25/228 (10%)
Query: 157 EASILVPGDVISIKLGDIIPADARLLD--GDPLKIDQSALTGESLPVTK----MPG---- 206
+A +VPGD++ + +GD +PAD R+L L++DQS LTGES+ V K +P
Sbjct: 142 KARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAV 201
Query: 207 -----DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQEGH-FQKVLTAIGN-- 258
+ +FSG+ G+ +V TGV T GK + +T Q+ Q+ L G
Sbjct: 202 NQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQL 261
Query: 259 ---FCICSIAIGMVIEIIVMYPIQHRAYRNG----IDNLLVLLIGGIPIAMPTVLSVTMA 311
+ +A+ ++ P+ ++ G + L + IP +P V++ +A
Sbjct: 262 SKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 321
Query: 312 IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLV 359
+G+ R++++ AI + + ++E + V+CSDKTGTLT N+++V K +
Sbjct: 322 LGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 131/288 (45%), Gaps = 26/288 (9%)
Query: 436 KGAPEQIIELCN----------LREDVRNKAHTIIDKFAD--RGLRSLAVAEQSVPEKTK 483
KGAPE +I+ CN + V+ K ++I ++ LR LA+A + P K +
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 484 E----------SPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 533
E FVG++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 534 TGRRLGM-GTNM-YPSSALLGQIKDANISALPVDELIEKADGFAGVFPEHKYEIVRKLQE 591
RR+G+ G N A G+ D ++ E +A FA V P HK +IV LQ
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFD-DLPLAEQREACRRACCFARVEPSHKSKIVEYLQS 693
Query: 592 RKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAI 651
I MTGDGVNDAPALKK +VL + S IV+AV RAI
Sbjct: 694 YDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAI 753
Query: 652 FQRMKNYTIYAVSITI-RIVLGFLLIALIWKFDFSPFMVLIIAILNDG 698
+ MK + Y +S + +V FL AL P +L + ++ DG
Sbjct: 754 YNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 25/228 (10%)
Query: 157 EASILVPGDVISIKLGDIIPADARLLD--GDPLKIDQSALTGESLPVTK----MPG---- 206
+A +VPGD++ + +GD +PAD R+L L++DQS LTGES+ V K +P
Sbjct: 141 KARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAV 200
Query: 207 -----DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQEGH-FQKVLTAIGN-- 258
+ +FSG+ G+ +V TGV T GK + +T Q+ Q+ L G
Sbjct: 201 NQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQL 260
Query: 259 ---FCICSIAIGMVIEIIVMYPIQHRAYRNG----IDNLLVLLIGGIPIAMPTVLSVTMA 311
+ +A+ ++ P+ ++ G + L + IP +P V++ +A
Sbjct: 261 SKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 320
Query: 312 IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLV 359
+G+ R++++ AI + + ++E + V+CSDKTGTLT N+++V K +
Sbjct: 321 LGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 131/288 (45%), Gaps = 26/288 (9%)
Query: 436 KGAPEQIIELCN----------LREDVRNKAHTIIDKFAD--RGLRSLAVAEQSVPEKTK 483
KGAPE +I+ CN + V+ K ++I ++ LR LA+A + P K +
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 484 E----------SPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 533
E FVG++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 534 TGRRLGM-GTNM-YPSSALLGQIKDANISALPVDELIEKADGFAGVFPEHKYEIVRKLQE 591
RR+G+ G N A G+ D ++ E +A FA V P HK +IV LQ
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFD-DLPLAEQREACRRACCFARVEPSHKSKIVEYLQS 693
Query: 592 RKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAI 651
I MTGDGVNDAPALKK +VL + S IV+AV RAI
Sbjct: 694 YDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAI 753
Query: 652 FQRMKNYTIYAVSITI-RIVLGFLLIALIWKFDFSPFMVLIIAILNDG 698
+ MK + Y +S + +V FL AL P +L + ++ DG
Sbjct: 754 YNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 117/228 (51%), Gaps = 25/228 (10%)
Query: 157 EASILVPGDVISIKLGDIIPADARLLD--GDPLKIDQSALTGESLPVTK----MPG---- 206
+A +VPGD++ + +GD +PAD R+L L++DQS LTGES+ V K +P
Sbjct: 141 KARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAV 200
Query: 207 -----DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQEGH-FQKVLTAIGN-- 258
+ +FSG+ G+ +V TGV T GK + +T Q+ Q+ L G
Sbjct: 201 NQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQL 260
Query: 259 ---FCICSIAIGMVIEIIVMYPIQHRAYRNG----IDNLLVLLIGGIPIAMPTVLSVTMA 311
+ +A+ ++ P+ ++ G + L + IP +P V++ +A
Sbjct: 261 SKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 320
Query: 312 IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLV 359
+G+ R++++ AI + + ++E + V+CS KTGTLT N+++V K +
Sbjct: 321 LGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 133/291 (45%), Gaps = 32/291 (10%)
Query: 436 KGAPEQIIELCN----------LREDVRNKAHTIIDKFAD--RGLRSLAVAEQSVPEKTK 483
KGAPE +I+ CN + V+ K ++I ++ LR LA+A + P K +
Sbjct: 514 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 573
Query: 484 E----------SPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 533
E FVG++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 574 EMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 633
Query: 534 TGRRLGM-GTNM-YPSSALLGQIKDANISALPVDELIE---KADGFAGVFPEHKYEIVRK 588
RR+G+ G N A G+ D LP+ E E +A FA V P HK +IV
Sbjct: 634 ICRRIGIFGENEDVADRAYTGREFDD----LPLAEQREACRRACCFARVEPTHKSKIVEY 689
Query: 589 LQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTS 648
LQ I MTGDGVNDAPALKK +VL + S IV+AV
Sbjct: 690 LQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 749
Query: 649 RAIFQRMKNYTIYAVSITI-RIVLGFLLIALIWKFDFSPFMVLIIAILNDG 698
RAI+ MK + Y +S + +V FL AL P +L + ++ DG
Sbjct: 750 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 800
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 28/242 (11%)
Query: 157 EASILVPGDVISIKLGDIIPADARLL--DGDPLKIDQSALTGESLPVTK----MPG---- 206
+A +VPGD++ + +GD +PAD R+L L++DQS LTGES+ V K +P
Sbjct: 141 KARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAV 200
Query: 207 -----DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQEGH-FQKVLTAIGN-- 258
+ +FSG+ G+ +V TGV T GK + +T Q+ Q+ L G
Sbjct: 201 NQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQL 260
Query: 259 ---FCICSIAIGMVIEIIVMYPIQHRAYRNG----IDNLLVLLIGGIPIAMPTVLSVTMA 311
+ +A+ ++ P+ ++ G + L + IP +P V++ +A
Sbjct: 261 SKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 320
Query: 312 IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFVKDMDKDTV 371
+G+ R++++ AI + + ++E + V+CSDKTGTLT N+++V K + + +D D
Sbjct: 321 LGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI---IDRIDGDLC 377
Query: 372 IL 373
+L
Sbjct: 378 LL 379
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 125/528 (23%), Positives = 205/528 (38%), Gaps = 87/528 (16%)
Query: 147 VLRDGAWREQEASILVPGDVISIKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKMPG 206
V+RDG + GD++ ++ G+ IP D +++G+ +D+S ++GE +PV K G
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 195
Query: 207 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQEGHFQKVLTAIGNFCICSIA 265
DEVF + G ++ G T + LV D+ + Q++ + + I ++
Sbjct: 196 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 255
Query: 266 IGMVIEIIVMYPIQHRAYRNGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSQQG 321
+ + I Y I H L+ +L+ P +A PT L+V M G+ + G
Sbjct: 256 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGA----ELG 311
Query: 322 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFVKDMDKDTVILYGARASRV 381
+ K A+E + + DKTGTLT K V +LV + + D+ ++ A A R
Sbjct: 312 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEV-TDLVPL---NGDERELLRLAAIAERR 367
Query: 382 ENQDAIDACIVGMLGDAKEARAGITELHFLPFNPVEKRTAITYIDSDGSWHRISKGAPEQ 441
+A + L H + EK I +G
Sbjct: 368 SEHPIAEAIVKKALE------------HGIELGEPEKVEVIA-----------GEGVVAD 404
Query: 442 IIELCNLR--ED----VRNKAHTIIDKFADRGLRSLAVAEQSVPEKTKESPGGPWQFVGL 495
I + N R ED V N+ ++K ++ VA E G+
Sbjct: 405 GILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVE-------------GI 451
Query: 496 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQIK 555
+ + D + + ++ +G+ V MITGD A+ R L +
Sbjct: 452 IAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL--------------- 496
Query: 556 DANISALPVDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKXXXX 615
D +I A V P K E V+KLQ K + GDG+NDAPAL +
Sbjct: 497 ---------DLVI------AEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLG 540
Query: 616 XXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAV 663
IVL L +V+A+ SR ++K +A+
Sbjct: 541 IAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 588
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 124/528 (23%), Positives = 205/528 (38%), Gaps = 87/528 (16%)
Query: 147 VLRDGAWREQEASILVPGDVISIKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKMPG 206
V+RDG + GD++ ++ G+ IP D +++G+ +D+S ++GE +PV K G
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 273
Query: 207 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQEGHFQKVLTAIGNFCICSIA 265
DEVF + G ++ G T + LV D+ + Q++ + + I ++
Sbjct: 274 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 333
Query: 266 IGMVIEIIVMYPIQHRAYRNGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSQQG 321
+ + I Y I H L+ +L+ P +A PT L+V M G+ + G
Sbjct: 334 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGA----ELG 389
Query: 322 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFVKDMDKDTVILYGARASRV 381
+ K A+E + + DKTGTLT K V +LV + + D+ ++ A A R
Sbjct: 390 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEV-TDLVPL---NGDERELLRLAAIAERR 445
Query: 382 ENQDAIDACIVGMLGDAKEARAGITELHFLPFNPVEKRTAITYIDSDGSWHRISKGAPEQ 441
+A + L H + EK I +G
Sbjct: 446 SEHPIAEAIVKKALE------------HGIELGEPEKVEVIA-----------GEGVVAD 482
Query: 442 IIELCNLR--ED----VRNKAHTIIDKFADRGLRSLAVAEQSVPEKTKESPGGPWQFVGL 495
I + N R ED V N+ ++K ++ VA E G+
Sbjct: 483 GILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVE-------------GI 529
Query: 496 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQIK 555
+ + D + + ++ +G+ V MITGD A+ R L +
Sbjct: 530 IAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL--------------- 574
Query: 556 DANISALPVDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKXXXX 615
+L+ A V P K E V+KLQ K + GDG+NDAPAL +
Sbjct: 575 ----------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLG 618
Query: 616 XXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAV 663
IVL L +V+A+ SR ++K +A+
Sbjct: 619 IAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 666
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 108/468 (23%), Positives = 189/468 (40%), Gaps = 64/468 (13%)
Query: 146 KVLRDGAWREQEASILVPGDVISIKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKMP 205
++ DG+ E + GD++ ++ G+ IP D + +G +D+S +TGE +PV K
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKEA 287
Query: 206 GDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQEGHFQKVLTAIGNFCICSI 264
+V + + G + G T + +V D+ Q++ + + + ++
Sbjct: 288 SAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAV 347
Query: 265 AIGMVIEIIVMYPIQHR-AYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAI 323
+ V+ IV + + A G+ + +LI P A+ +++ +G + +Q G +
Sbjct: 348 ILVAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVL 407
Query: 324 TKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFVKDMDKDTVILYGARASRVEN 383
K A+E M ++ L DKTGTLT + + + + FV+D ++
Sbjct: 408 IKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDDFVEDNALALAAALEHQSEHPLA 467
Query: 384 QDAIDACIVGMLGDAKEARAGITELHFLPFNPVEKRTAITYIDSDGSWHRISKGAPEQII 443
+ A AKE G++ F + + +D H ++ G +
Sbjct: 468 NAIVHA--------AKE--KGLSLGSVEAFEAPTGKGVVGQVDG----HHVAIGNARLMQ 513
Query: 444 ELCNLREDVRNKAHTIIDKFADRGLRSLAVAEQSVPEKTKESPGGPWQFVGLLPLFDPPR 503
E + KA D+ +G + +A V KT V LL + DP +
Sbjct: 514 EHGGDNAPLFEKA----DELRGKGASVMFMA---VDGKT----------VALLVVEDPIK 556
Query: 504 HDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQIKDANISALP 563
+ ETI G+ + M+TGD A+ LG
Sbjct: 557 SSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG------------------------ 592
Query: 564 VDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKK 611
I+K A + PE K IV +L+++ I M GDGVNDAPAL K
Sbjct: 593 ----IKKV--VAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
>pdb|2O98|P Chain P, Structure Of The 14-3-3 H+-Atpase Plant Complex
pdb|2O98|Q Chain Q, Structure Of The 14-3-3 H+-Atpase Plant Complex
Length = 52
Score = 86.7 bits (213), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/51 (78%), Positives = 47/51 (92%)
Query: 912 NYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 962
N+ EL+++AE+AKRRAE+AR RELHTLKGHVESVVKLKGLDIETIQQ Y +
Sbjct: 2 NFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYDI 52
>pdb|3M50|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
EPIBESTAT
pdb|3M51|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
PYRROLIDO
pdb|4DX0|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
PYRAZOLE Derivative
Length = 31
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/30 (86%), Positives = 28/30 (93%)
Query: 933 RELHTLKGHVESVVKLKGLDIETIQQHYTV 962
RELHTLKGHVE+VVKLKGLDIETIQQ Y +
Sbjct: 2 RELHTLKGHVEAVVKLKGLDIETIQQSYDI 31
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 31/118 (26%)
Query: 494 GLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQ 553
G++ L D R +S E I + +G+ M+TGD +AK LG+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------ 184
Query: 554 IKDANISALPVDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKK 611
D FA V P K E V+++Q+ K++ M GDGVNDAPAL +
Sbjct: 185 ------------------DYFAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQ 223
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 31/118 (26%)
Query: 494 GLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQ 553
G++ L D R +S E I + +G+ M+TGD +AK LG+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------ 184
Query: 554 IKDANISALPVDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKK 611
D FA V P K E V+++Q+ K++ M GDGVNDAPAL +
Sbjct: 185 ------------------DYFAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQ 223
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 164 GDVISIKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKMPGDEVFSGSTCKQGEIEAV 223
GD+I + G P D R+++G + +D+S +TGE++PV K PG V +GS + G +
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKPGSTVIAGSINQNGSLLIC 103
Query: 224 VIATGVHTFFGKAAHLVD 241
G T + LV+
Sbjct: 104 ATHVGADTTLSQIVKLVE 121
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 147 VLRDGAWREQEASILVPGDVISIKLGDIIPADARLLDGDPLKIDQSALTGESLPVTKMPG 206
V+RDG + GD++ ++ G+ IP D +++G+ +D+S ++GE +PV K G
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 74
Query: 207 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVD 241
DEVF + G ++ G T + LV+
Sbjct: 75 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 109
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 494 GLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQ 553
G++ + D + + ++ +G+ V MITGD A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 554 IKDANISALPVDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKXX 613
+L+ A V P K E V+KLQ K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQAD 244
Query: 614 XXXXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAIFQRMK 656
IVL L +V+A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 494 GLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQ 553
G++ + D + + ++ +G+ V MITGD A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 554 IKDANISALPVDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKXX 613
+L+ A V P K E V+KLQ K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQAD 244
Query: 614 XXXXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSRAIFQRMK 656
IVL L +V+A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 31/156 (19%)
Query: 494 GLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQ 553
G++ + D + + ++ G+ V ITGD A+ R L +
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL------------- 182
Query: 554 IKDANISALPVDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKXX 613
+L+ A V P K E V+KLQ K + GDG+NDAPAL +
Sbjct: 183 ------------DLV-----IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQAD 224
Query: 614 XXXXXXXXXXXXXXXXXIVLTEPGLSVIVSAVLTSR 649
IVL L +V+A+ SR
Sbjct: 225 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 574 FAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPAL 609
A V P K E V+KLQ K + GDG+NDAPAL
Sbjct: 65 IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPAL 99
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 24/144 (16%)
Query: 383 NQDAIDACIVGMLGDAKEARAGITELHFLPFNPVEKRTAITYIDSDGSWHR---ISKGAP 439
++ A+ CI G E R T++ +PFN K + + + S + + KGAP
Sbjct: 70 SESALLKCIEVCCGSVMEMREKYTKIVEIPFNSTNKYQLSIHKNPNASEPKHLLVMKGAP 129
Query: 440 EQIIELCN----------LREDVRN---KAHTIIDKFADR--GLRSLAVAEQSVPE---- 480
E+I++ C+ L E++++ A+ + +R G L + ++ PE
Sbjct: 130 ERILDRCSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLLLPDEQFPEGFQF 189
Query: 481 KTKES--PGGPWQFVGLLPLFDPP 502
T E P FVGL+ + DPP
Sbjct: 190 DTDEVNFPVDNLCFVGLISMIDPP 213
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 17/70 (24%)
Query: 856 YALTGKAWDNLLENKTAFTTK----------KDYGRGEREAQWALAQR----TLHG---L 898
Y +TG++W L KT +T + + Y + + AQ ++ ++ HG L
Sbjct: 191 YTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLL 250
Query: 899 HPPETSELLN 908
+PPET LLN
Sbjct: 251 NPPETLNLLN 260
>pdb|3TG9|A Chain A, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
pdb|3TG9|B Chain B, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
Length = 356
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 402 RAGITELHFLPFNPVEKRTAITYID-SDGSW 431
RAG+ E + F+ + +TA+ YID DGSW
Sbjct: 183 RAGMHESGYFAFDTLPAKTALGYIDLEDGSW 213
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 30/105 (28%)
Query: 500 DPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQIKDANI 559
D PR + + + + N G+ + +++GD+ KE + L +
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------------- 175
Query: 560 SALPVDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVN 604
+ ++ + PE K I+ KL++ + M GDGVN
Sbjct: 176 -----------QEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 30/105 (28%)
Query: 500 DPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQIKDANI 559
D PR + + + + N G+ + +++GD+ KE + L +
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------------- 175
Query: 560 SALPVDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVN 604
+ ++ + PE K I+ KL++ + M GDGVN
Sbjct: 176 -----------QEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 30/105 (28%)
Query: 500 DPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQIKDANI 559
D PR + + + + N G+ + +++GD+ KE + L +
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------------- 175
Query: 560 SALPVDELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVN 604
+ ++ + PE K I+ KL++ + M GDGVN
Sbjct: 176 -----------QEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|3GVC|A Chain A, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
pdb|3GVC|B Chain B, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
pdb|3GVC|C Chain C, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
pdb|3GVC|D Chain D, Crystal Structure Of Probable Short-Chain Dehydrogenase-
Reductase From Mycobacterium Tuberculosis
Length = 277
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 370 TVILYGARASRVENQDA------IDACIVGMLG-DAKEARAGITELHFLPFNPVEKRTAI 422
T I GA A RV+ D +DAC+ G D A AG+ L L VE +
Sbjct: 71 TKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRV 130
Query: 423 TYIDSDGSWHRISKGAPEQI 442
I+ G+W AP I
Sbjct: 131 IAINLRGAWLCTKHAAPRMI 150
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 411 LPFNPVEKRTAITYIDSDGSWHRISKGAPEQIIELCN----------LREDVRNKAHTII 460
+PF+ +R ++ ++ + KGA ++I+ +C+ L + + K +
Sbjct: 62 IPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVT 121
Query: 461 DKFADRGLRSLAVAEQSVPEK 481
D +GLR +AVA + +P +
Sbjct: 122 DTLNRQGLRVVAVATKYLPAR 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,169,356
Number of Sequences: 62578
Number of extensions: 979737
Number of successful extensions: 2293
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2175
Number of HSP's gapped (non-prelim): 65
length of query: 962
length of database: 14,973,337
effective HSP length: 108
effective length of query: 854
effective length of database: 8,214,913
effective search space: 7015535702
effective search space used: 7015535702
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)