BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044545
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DQW|A Chain A, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DQW|B Chain B, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DZA|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZA|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZB|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
pdb|2DZB|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
Length = 294
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 19/79 (24%)
Query: 46 AKPVDLEKINLLFFPTIQLNVTLGVVVTVDNR-----------------NYGGFKYQNGT 88
A PV +E+ P ++ ++LGV V+VD R + G + +
Sbjct: 80 AAPVPVEEEKRRLLPVLEAVLSLGVPVSVDTRKPEVAEEALKLGAHLLNDVTGLRDERMV 139
Query: 89 AYVSYHGV--VVAEAPVED 105
A + HGV VV PV D
Sbjct: 140 ALAARHGVAAVVMHMPVPD 158
>pdb|1GDI|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1GDJ|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1GDK|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1GDL|A Chain A, Crystal Structure Of Ferric Complexes Of The Yellow Lupin
Leghemoglobin With Isoquinoline At 1.8 Angstroms
Resolution (Russian)
pdb|1LH1|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH2|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH3|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH5|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH6|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|1LH7|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2GDM|A Chain A, Leghemoglobin (oxy)
pdb|2LH1|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH2|A Chain A, X-ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (russian)
pdb|2LH3|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH5|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH6|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
pdb|2LH7|A Chain A, X-Ray Structural Investigation Of Leghemoglobin. Vi.
Structure Of Acetate-Ferrileghemoglobin At A Resolution
Of 2.0 Angstroms (Russian)
Length = 153
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 56 LLFFPTIQLNVTLGVVVT-VDNRNYGGFKYQNGTAYVSYHGVVVAEAPVEDGR--IPARG 112
L++ IQL VT GVVVT +N G G A H VV EA ++ + + A+
Sbjct: 70 LVYEAAIQLEVT-GVVVTDATLKNLGSVHVSKGVA--DAHFPVVKEAILKTIKEVVGAKW 126
Query: 113 KQNISSSLTIFADKL 127
+ ++S+ TI D+L
Sbjct: 127 SEELNSAWTIAYDEL 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,749,921
Number of Sequences: 62578
Number of extensions: 175929
Number of successful extensions: 500
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 5
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)