BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044545
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C4K776|SYT_HAMD5 Threonine--tRNA ligase OS=Hamiltonella defensa subsp. Acyrthosiphon
pisum (strain 5AT) GN=thrS PE=3 SV=1
Length = 638
Score = 34.7 bits (78), Expect = 0.41, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 68 LGVVVTVDNRNYG-GFKYQNGTAYVSYHGVVVAEAPVEDGRIPAR---GKQNISSSLTIF 123
LGV VD RN GFK + T Y + +V + VE +I R GK S S+ +F
Sbjct: 565 LGVRAKVDLRNEKIGFKIRQHTLYRIPYILVCGDKEVESNQIAVRTHSGKDLGSFSVNVF 624
Query: 124 ADKLI 128
ADKL+
Sbjct: 625 ADKLL 629
>sp|A1W038|DAPE_CAMJJ Succinyl-diaminopimelate desuccinylase OS=Campylobacter jejuni
subsp. jejuni serotype O:23/36 (strain 81-176) GN=dapE
PE=3 SV=1
Length = 365
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 101 APVE-DGRIPARGKQNISSSLTIFADKLISNSNFLGDILSGVMNFSST-TTLHGEVIVLK 158
APVE +G I ARG Q++ S + F D + N++F G LS ++ ++G VL+
Sbjct: 81 APVEKEGFIYARGAQDMKSGVAAFVD-AVKNADFKGARLSLILTSDEEGEAIYGTKAVLE 139
Query: 159 YFKQK 163
+ +++
Sbjct: 140 WMQER 144
>sp|Q8LCS8|MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana
GN=MUB2 PE=1 SV=1
Length = 124
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 75 DNRNYGGFKYQNGTAYVSYHGVVVAEAPVEDGRIPARGKQNISSSLTIFADKLISNSNFL 134
D + G + + T + VVA+ P R G + + I A +++ N+ +
Sbjct: 16 DGSDIGPKLFPDATTVATLKETVVAQWP----RDKENGPKTVKDVKLISAGRILENNKTV 71
Query: 135 GDILSGVMNFS-STTTLH 151
GD S V NFS + TT+H
Sbjct: 72 GDCRSPVGNFSGAVTTMH 89
>sp|Q0P9K4|DAPE_CAMJE Succinyl-diaminopimelate desuccinylase OS=Campylobacter jejuni
subsp. jejuni serotype O:2 (strain NCTC 11168) GN=dapE
PE=1 SV=1
Length = 365
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 101 APVE-DGRIPARGKQNISSSLTIFADKLISNSNFLGDILSGVMNFSST-TTLHGEVIVLK 158
APVE +G I ARG Q++ S + F D N++F G LS ++ ++G VL+
Sbjct: 81 APVEKEGFIYARGAQDMKSGVAAFVD-AAKNADFKGARLSLILTSDEEGEAIYGTKAVLE 139
Query: 159 YFKQK 163
+ +++
Sbjct: 140 WMQER 144
>sp|Q75GT2|MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp.
japonica GN=MUB1 PE=3 SV=1
Length = 119
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 75 DNRNYGGFKYQNGTAYVSYHGVVVAEAPVEDGRIPARGKQNISSSLTIFADKLISNSNFL 134
D + G +Y + + +VA+ P + +G + ++ I A K++ N+ L
Sbjct: 17 DGTDIGPKRYPAASTVATLKESIVAQWPKDK----EKGPRTVNDLKLINAGKILENNKTL 72
Query: 135 GDILSGVMNFSSTTTLH 151
+ S + +FS TT+H
Sbjct: 73 SECKSPICDFSGLTTMH 89
>sp|Q2KHR3|QSER1_HUMAN Glutamine and serine-rich protein 1 OS=Homo sapiens GN=QSER1 PE=1
SV=3
Length = 1735
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 60 PTIQLNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPVEDGRIPARGKQNISSS 119
PT + +G V ++ G FK Q+ T S +EAPV+ R ++ +SSS
Sbjct: 955 PTKVTSAVVGPSHEVQEQSSGPFKKQSATNLESEED---SEAPVDSTLNNNRNQEFVSSS 1011
Query: 120 LTIFADKLISNSNF-LGDILSGV-MN 143
+I + S S F LG SGV MN
Sbjct: 1012 RSISGENATSESEFTLGGDDSGVSMN 1037
>sp|P41892|CDC7_SCHPO Cell division control protein 7 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cdc7 PE=1 SV=1
Length = 1062
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 113 KQNISSSLTIFADKLISNSNFLGDILSGVMNFSST-TTLHGEVIVLKYFKQKATSSSSCD 171
K+N+ L +F ++SN + D L V S +G+ I+ + FK+K T +
Sbjct: 915 KRNVQLVLKVFCISQSASSNRMLDTLGRVCQISPRLAASYGQPIIFQKFKEKLTHKGTKP 974
Query: 172 ISIVLQSQIIDSVCES 187
I ++ QI+ S+CE+
Sbjct: 975 IVVLNIFQIMKSMCEA 990
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,342,576
Number of Sequences: 539616
Number of extensions: 2463455
Number of successful extensions: 6321
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6316
Number of HSP's gapped (non-prelim): 19
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)