Query 044545
Match_columns 191
No_of_seqs 118 out of 700
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:19:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 8.9E-47 1.9E-51 303.3 26.3 187 5-191 30-219 (219)
2 PF03168 LEA_2: Late embryogen 99.5 1.6E-14 3.5E-19 101.8 6.1 98 71-171 1-100 (101)
3 smart00769 WHy Water Stress an 98.9 1.6E-08 3.5E-13 71.7 9.2 84 61-147 10-95 (100)
4 PF07092 DUF1356: Protein of u 98.6 1.4E-06 2.9E-11 70.5 13.0 87 36-123 95-182 (238)
5 COG5608 LEA14-like dessication 98.0 0.00049 1.1E-08 51.9 14.1 110 39-159 30-141 (161)
6 PF12751 Vac7: Vacuolar segreg 97.2 0.0014 3E-08 56.5 7.4 37 63-99 345-381 (387)
7 PLN03160 uncharacterized prote 89.9 0.83 1.8E-05 36.8 5.5 30 8-37 30-59 (219)
8 PF14155 DUF4307: Domain of un 89.0 6.8 0.00015 28.2 11.4 14 92-105 71-86 (112)
9 PRK10893 lipopolysaccharide ex 87.0 12 0.00026 29.5 10.2 20 38-57 37-56 (192)
10 KOG3950 Gamma/delta sarcoglyca 84.3 4.2 9.2E-05 33.4 6.5 21 61-81 103-124 (292)
11 PF11906 DUF3426: Protein of u 81.6 17 0.00036 27.0 8.6 58 44-103 48-106 (149)
12 COG1580 FliL Flagellar basal b 77.8 11 0.00023 29.0 6.5 35 2-37 8-42 (159)
13 PF11395 DUF2873: Protein of u 74.2 1.6 3.5E-05 25.0 0.8 21 18-38 13-33 (43)
14 COG4698 Uncharacterized protei 73.7 1.5 3.2E-05 34.2 0.8 38 11-51 11-48 (197)
15 TIGR02588 conserved hypothetic 73.2 34 0.00073 25.1 11.4 51 19-78 10-61 (122)
16 PRK05529 cell division protein 73.1 5.7 0.00012 32.7 4.2 16 41-56 58-73 (255)
17 PF06072 Herpes_US9: Alphaherp 71.6 0.93 2E-05 28.8 -0.6 15 7-21 28-42 (60)
18 PF09624 DUF2393: Protein of u 70.6 19 0.00041 26.8 6.3 53 38-100 44-96 (149)
19 PF04478 Mid2: Mid2 like cell 70.5 5.2 0.00011 30.5 3.1 35 9-44 48-82 (154)
20 PF04790 Sarcoglycan_1: Sarcog 68.3 69 0.0015 26.6 13.4 17 63-79 83-100 (264)
21 PF00927 Transglut_C: Transglu 60.4 36 0.00078 23.6 5.8 61 61-121 10-75 (107)
22 PF09865 DUF2092: Predicted pe 60.2 46 0.001 26.7 6.9 39 61-99 34-74 (214)
23 PF05545 FixQ: Cbb3-type cytoc 54.9 7.4 0.00016 23.5 1.2 16 25-41 19-34 (49)
24 PF12505 DUF3712: Protein of u 54.8 28 0.0006 25.2 4.5 26 65-90 99-124 (125)
25 cd01324 cbb3_Oxidase_CcoQ Cyto 54.3 8.7 0.00019 23.3 1.4 15 26-41 21-35 (48)
26 PTZ00382 Variant-specific surf 53.4 8.9 0.00019 26.8 1.6 16 24-39 79-94 (96)
27 PF14927 Neurensin: Neurensin 52.8 10 0.00022 28.5 1.8 25 19-45 51-75 (140)
28 PF10907 DUF2749: Protein of u 50.3 18 0.00038 23.5 2.4 18 23-40 11-28 (66)
29 PRK07718 fliL flagellar basal 49.9 22 0.00048 26.5 3.4 17 24-40 15-31 (142)
30 PF11797 DUF3324: Protein of u 49.1 1.1E+02 0.0023 22.7 9.1 86 41-148 27-114 (140)
31 PRK07021 fliL flagellar basal 48.2 56 0.0012 24.8 5.4 15 82-96 78-92 (162)
32 PF11837 DUF3357: Domain of un 46.3 6.6 0.00014 27.9 0.0 11 8-18 24-34 (106)
33 PF14874 PapD-like: Flagellar- 45.4 94 0.002 21.0 9.8 55 64-121 18-72 (102)
34 PF11322 DUF3124: Protein of u 43.1 76 0.0016 23.4 5.1 53 63-118 20-75 (125)
35 PRK06531 yajC preprotein trans 42.7 13 0.00028 26.9 1.0 11 33-43 16-26 (113)
36 CHL00031 psbT photosystem II p 42.0 24 0.00052 19.6 1.8 17 28-44 13-29 (33)
37 PRK11875 psbT photosystem II r 40.9 22 0.00047 19.5 1.5 16 29-44 14-29 (31)
38 COG1862 YajC Preprotein transl 39.5 16 0.00034 25.7 1.0 23 21-43 11-33 (97)
39 PRK12785 fliL flagellar basal 39.2 1.7E+02 0.0038 22.3 7.5 14 83-96 87-100 (166)
40 PF07705 CARDB: CARDB; InterP 38.6 1.1E+02 0.0025 20.1 7.9 54 65-122 18-71 (101)
41 COG5353 Uncharacterized protei 36.1 32 0.00069 26.2 2.2 28 11-39 6-33 (161)
42 PRK05886 yajC preprotein trans 35.9 17 0.00036 26.1 0.7 15 29-43 14-28 (109)
43 PF06024 DUF912: Nucleopolyhed 35.5 48 0.001 23.2 3.0 23 18-40 68-90 (101)
44 PHA03049 IMV membrane protein; 35.3 16 0.00035 23.7 0.5 21 20-40 6-26 (68)
45 PF07423 DUF1510: Protein of u 34.8 19 0.0004 29.1 0.9 15 8-22 9-23 (217)
46 PF06835 LptC: Lipopolysacchar 34.6 1.9E+02 0.004 21.3 9.2 33 64-96 51-83 (176)
47 PF14055 NVEALA: NVEALA protei 34.4 19 0.00041 23.1 0.7 26 29-54 15-40 (65)
48 PF04573 SPC22: Signal peptida 34.1 1.2E+02 0.0025 23.6 5.2 11 37-47 32-42 (175)
49 PF10830 DUF2553: Protein of u 33.2 89 0.0019 20.9 3.8 29 78-106 8-36 (76)
50 PF08113 CoxIIa: Cytochrome c 32.8 20 0.00044 20.0 0.6 14 20-33 10-23 (34)
51 PF09911 DUF2140: Uncharacteri 32.3 60 0.0013 25.4 3.4 18 24-42 14-31 (187)
52 TIGR00739 yajC preprotein tran 31.0 36 0.00078 23.1 1.7 17 26-42 10-26 (84)
53 PF10969 DUF2771: Protein of u 30.1 63 0.0014 24.7 3.1 25 23-47 13-40 (161)
54 PF08372 PRT_C: Plant phosphor 29.6 12 0.00027 28.6 -0.9 18 29-46 118-135 (156)
55 COG3121 FimC P pilus assembly 29.2 1.1E+02 0.0023 24.9 4.5 42 71-117 166-207 (235)
56 KOG3927 Na+/K+ ATPase, beta su 28.8 23 0.0005 30.1 0.5 23 34-57 70-92 (300)
57 PF12321 DUF3634: Protein of u 28.1 24 0.00051 25.3 0.4 14 33-46 13-28 (108)
58 PRK13150 cytochrome c-type bio 27.6 1.6E+02 0.0034 22.7 4.8 34 70-103 80-115 (159)
59 COG4736 CcoQ Cbb3-type cytochr 27.3 29 0.00064 22.1 0.7 8 34-41 27-34 (60)
60 PF05961 Chordopox_A13L: Chord 27.3 28 0.0006 22.7 0.6 21 20-40 6-26 (68)
61 PRK05696 fliL flagellar basal 27.0 85 0.0018 24.0 3.4 13 83-95 87-99 (170)
62 PRK08455 fliL flagellar basal 26.7 72 0.0016 24.9 3.0 7 36-42 41-47 (182)
63 PRK05585 yajC preprotein trans 26.6 35 0.00076 24.3 1.1 19 24-42 23-41 (106)
64 PF15012 DUF4519: Domain of un 26.4 72 0.0016 20.0 2.3 11 30-40 46-56 (56)
65 PRK15188 fimbrial chaperone pr 26.3 1.1E+02 0.0023 24.9 4.0 33 72-108 166-198 (228)
66 PF13598 DUF4139: Domain of un 25.0 4E+02 0.0087 22.1 8.4 35 69-105 169-203 (317)
67 COG1589 FtsQ Cell division sep 24.7 39 0.00084 27.9 1.2 26 30-55 46-71 (269)
68 PRK15136 multidrug efflux syst 22.7 42 0.00091 29.2 1.1 6 150-155 285-290 (390)
69 PF14283 DUF4366: Domain of un 20.9 74 0.0016 25.7 2.1 12 33-44 179-190 (218)
70 PF07509 DUF1523: Protein of u 20.3 4.3E+02 0.0092 20.7 6.9 21 37-57 24-44 (175)
71 PF07680 DoxA: TQO small subun 20.2 3.4E+02 0.0073 20.2 5.3 45 38-82 13-62 (133)
72 PF10814 DUF2562: Protein of u 20.1 64 0.0014 23.8 1.4 30 12-42 89-118 (133)
73 PTZ00116 signal peptidase; Pro 20.0 3.4E+02 0.0073 21.4 5.5 18 39-56 36-53 (185)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=8.9e-47 Score=303.30 Aligned_cols=187 Identities=33% Similarity=0.543 Sum_probs=174.1
Q ss_pred cccccCceEEehHHHHHHHHHHHHHHhheeeEeecCCCeEEEEEEEEeeeeeec--CcceeEEEEEEEEEEEECCCceeE
Q 044545 5 KRSSKCLKCCCGITSILLIIVLIVLIILFFTLFKPKEPKITAKPVDLEKINLLF--FPTIQLNVTLGVVVTVDNRNYGGF 82 (191)
Q Consensus 5 ~~~~r~~~~c~~~~~~~li~~~~i~~il~~lv~rP~~P~~~v~s~~l~~~~~~~--~~~~~l~~~l~~~v~v~NPN~~~i 82 (191)
++|+|+|++||++++++++++++++++++|++||||+|+|+|+++++++|+++. .++..+|++++++++++|||+++|
T Consensus 30 ~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~ 109 (219)
T PLN03160 30 KTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNVASF 109 (219)
T ss_pred ccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCceeE
Confidence 356777888999999988888999999999999999999999999999999864 236789999999999999999999
Q ss_pred EEeccEEEEEECCEEEEeeeeCCCcccCCCceeEEEEEEEeeeeeccCccccccccCCeEEEEEEEEEEEEEEEEEEEee
Q 044545 83 KYQNGTAYVSYHGVVVAEAPVEDGRIPARGKQNISSSLTIFADKLISNSNFLGDILSGVMNFSSTTTLHGEVIVLKYFKQ 162 (191)
Q Consensus 83 ~y~~~~~~v~Y~g~~lg~~~vp~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~d~~~G~v~l~~~~~v~~rv~~~~~~~~ 162 (191)
+|+++++.++|+|+.+|++.+|+|+|++|+++.+++++.+.++.+.++++|.+|+++|.++|+++++++||+++++++++
T Consensus 110 ~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~ 189 (219)
T PLN03160 110 KYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSVPGLLTDISSGLLNMNSYTRIGGKVKILKIIKK 189 (219)
T ss_pred EEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceeccchhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEE
Confidence 99999999999999999999999999999999999999888877766788999999999999999999999999999999
Q ss_pred eEEEEEEeEEEEEcccceee-ecccccccC
Q 044545 163 KATSSSSCDISIVLQSQIID-SVCESKVEL 191 (191)
Q Consensus 163 ~~~~~v~C~~~v~~~~~~i~-~~C~~~~k~ 191 (191)
+++++++|++.|+..+.+++ ++|+.++++
T Consensus 190 ~v~~~v~C~v~V~~~~~~i~~~~C~~~~~~ 219 (219)
T PLN03160 190 HVVVKMNCTMTVNITSQAIQGQKCKRHVDL 219 (219)
T ss_pred EEEEEEEeEEEEECCCCEEeccEecccccC
Confidence 99999999999999999999 999999875
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.53 E-value=1.6e-14 Score=101.78 Aligned_cols=98 Identities=21% Similarity=0.267 Sum_probs=73.2
Q ss_pred EEEEECCCceeEEEeccEEEEEECCEEEE-eeeeCCCcccCCCceeEEEEEEEeeeeeccCccccccccCCeEEEEEEEE
Q 044545 71 VVTVDNRNYGGFKYQNGTAYVSYHGVVVA-EAPVEDGRIPARGKQNISSSLTIFADKLISNSNFLGDILSGVMNFSSTTT 149 (191)
Q Consensus 71 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg-~~~vp~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~d~~~G~v~l~~~~~ 149 (191)
+++++|||.++++|++.++.++|+|..+| ....|+|.|++++++.+.+++.++...+. ..+.++. +|..++++..+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~--~~l~~~~-~~~~~~~v~~~ 77 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLP--RLLKDLL-AGRVPFDVTYR 77 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHH--HHHHHHH-HTTSCEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHHH--HHHHhhh-ccccceEEEEE
Confidence 57999999999999999999999999999 77889999999999999988877765442 2234444 55677788888
Q ss_pred EEEEEEE-EEEEeeeEEEEEEeE
Q 044545 150 LHGEVIV-LKYFKQKATSSSSCD 171 (191)
Q Consensus 150 v~~rv~~-~~~~~~~~~~~v~C~ 171 (191)
+++++++ ...+..+.+..++|+
T Consensus 78 ~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 78 IRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEcccceeeeEEEeEEeE
Confidence 8888885 333334455555664
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.89 E-value=1.6e-08 Score=71.67 Aligned_cols=84 Identities=17% Similarity=0.245 Sum_probs=66.6
Q ss_pred ceeEEEEEEEEEEEECCCceeEEEeccEEEEEECCEEEEeeeeC-CCcccCCCceeEEEEEEEeeeeeccCccccccccC
Q 044545 61 TIQLNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPVE-DGRIPARGKQNISSSLTIFADKLISNSNFLGDILS 139 (191)
Q Consensus 61 ~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp-~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~d~~~ 139 (191)
...++.++.+.+.+.|||.+++.|++.+..++|+|..+|++..+ ++.+++++++.+.+++.+.. .. ...+..++..
T Consensus 10 ~~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~-~~--~~~~~~~l~~ 86 (100)
T smart00769 10 VSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNL-FL--AEALIWHIAN 86 (100)
T ss_pred ccceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeeh-hH--hHHHHHhhcc
Confidence 34678899999999999999999999999999999999999996 79999999999999988842 11 1334455555
Q ss_pred Ce-EEEEEE
Q 044545 140 GV-MNFSST 147 (191)
Q Consensus 140 G~-v~l~~~ 147 (191)
|+ ++++++
T Consensus 87 ~~~~~y~l~ 95 (100)
T smart00769 87 GEEIPYRLD 95 (100)
T ss_pred CCCccEEEE
Confidence 53 444333
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.61 E-value=1.4e-06 Score=70.48 Aligned_cols=87 Identities=13% Similarity=0.181 Sum_probs=66.6
Q ss_pred EeecCCCeEEEEEEEEeeeeeecCcceeEEEEEEEEEEEECCCceeEEEeccEEEEEECCEEEEeeeeCC-CcccCCCce
Q 044545 36 LFKPKEPKITAKPVDLEKINLLFFPTIQLNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPVED-GRIPARGKQ 114 (191)
Q Consensus 36 v~rP~~P~~~v~s~~l~~~~~~~~~~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~-~~~~~~~~~ 114 (191)
.+-||.-.++-.++......++. .......+++-.+.+.|||++.+...+.++.+.|....+|.+.... ..++|++.+
T Consensus 95 FLfPRsV~v~~~gv~s~~V~f~~-~~~~v~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~ 173 (238)
T PF07092_consen 95 FLFPRSVTVSPVGVKSVTVSFNP-DKSTVQLNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSK 173 (238)
T ss_pred EEeCcEEEEecCcEEEEEEEEeC-CCCEEEEEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCc
Confidence 34588766665555554444442 2346778888899999999999999999999999999999998865 478899988
Q ss_pred eEEEEEEEe
Q 044545 115 NISSSLTIF 123 (191)
Q Consensus 115 ~~~~~~~~~ 123 (191)
.+..++...
T Consensus 174 q~~~tV~t~ 182 (238)
T PF07092_consen 174 QVNYTVKTT 182 (238)
T ss_pred eEEEEeeEE
Confidence 877765543
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=98.02 E-value=0.00049 Score=51.94 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=74.0
Q ss_pred cCCCeEEEEEEEEeeeeeecCcceeEEEEEEEEEEEECCCceeEEEeccEEEEEECCEEEEeeee-CCCcccCCCceeEE
Q 044545 39 PKEPKITAKPVDLEKINLLFFPTIQLNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPV-EDGRIPARGKQNIS 117 (191)
Q Consensus 39 P~~P~~~v~s~~l~~~~~~~~~~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~v-p~~~~~~~~~~~~~ 117 (191)
-+.|.+.--.+..-... .....+-.++.++|||-+.+-..+.+..++-+|.++|.+.. -++..++++..++.
T Consensus 30 ~~~p~ve~~ka~wGkvt-------~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvd 102 (161)
T COG5608 30 VKKPGVESMKAKWGKVT-------NSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVD 102 (161)
T ss_pred cCCCCceEEEEEEEEEe-------ccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEE
Confidence 34565554444443332 22345667889999999999999999999999999999877 55899999999999
Q ss_pred EEEEEeeeeeccCccccccccCCeE-EEEEEEEEEEEEEEEEE
Q 044545 118 SSLTIFADKLISNSNFLGDILSGVM-NFSSTTTLHGEVIVLKY 159 (191)
Q Consensus 118 ~~~~~~~~~v~~~~~l~~d~~~G~v-~l~~~~~v~~rv~~~~~ 159 (191)
+++..+..++. ......+..|+= + ++.++.+.+++++.
T Consensus 103 v~l~~d~~~~k--e~w~~hi~ngErs~--Ir~~i~~~v~vg~~ 141 (161)
T COG5608 103 VPLRLDNSKIK--EWWVTHIENGERST--IRVRIKGVVKVGGM 141 (161)
T ss_pred EEEEEehHHHH--HHHHHHhhccCccc--EEEEEEEEEEEccE
Confidence 98877753331 123346666641 2 23345555555443
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.20 E-value=0.0014 Score=56.54 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=29.8
Q ss_pred eEEEEEEEEEEEECCCceeEEEeccEEEEEECCEEEE
Q 044545 63 QLNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVA 99 (191)
Q Consensus 63 ~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg 99 (191)
.-..-|+++|.+.|||.+.|..+..++.++-+-..+|
T Consensus 345 ~qELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 345 EQELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred cceEEEeeEEEEECCCeEEEEeccceeeeEecCCccC
Confidence 3455678899999999999999999999986544444
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=89.89 E-value=0.83 Score=36.84 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=15.4
Q ss_pred ccCceEEehHHHHHHHHHHHHHHhheeeEe
Q 044545 8 SKCLKCCCGITSILLIIVLIVLIILFFTLF 37 (191)
Q Consensus 8 ~r~~~~c~~~~~~~li~~~~i~~il~~lv~ 37 (191)
+++.++|+.|+..++.++.++++++..++|
T Consensus 30 ~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~ 59 (219)
T PLN03160 30 KTRRRNCIKCCGCITATLLILATTILVLVF 59 (219)
T ss_pred ccccccceEEHHHHHHHHHHHHHHHHheee
Confidence 344445555555555555555555555444
No 8
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=88.99 E-value=6.8 Score=28.15 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=9.4
Q ss_pred EECCEEEEee--eeCC
Q 044545 92 SYHGVVVAEA--PVED 105 (191)
Q Consensus 92 ~Y~g~~lg~~--~vp~ 105 (191)
-|++..+|.- .+|+
T Consensus 71 ~~d~aeVGrreV~vp~ 86 (112)
T PF14155_consen 71 DYDGAEVGRREVLVPP 86 (112)
T ss_pred eCCCCEEEEEEEEECC
Confidence 4778889854 4455
No 9
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=86.98 E-value=12 Score=29.49 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=17.0
Q ss_pred ecCCCeEEEEEEEEeeeeee
Q 044545 38 KPKEPKITAKPVDLEKINLL 57 (191)
Q Consensus 38 rP~~P~~~v~s~~l~~~~~~ 57 (191)
.++.|+|.+++++...|+.+
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 46789999999999988865
No 10
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=84.32 E-value=4.2 Score=33.36 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=16.6
Q ss_pred ceeEEEEEEEEEEEECCC-cee
Q 044545 61 TIQLNVTLGVVVTVDNRN-YGG 81 (191)
Q Consensus 61 ~~~l~~~l~~~v~v~NPN-~~~ 81 (191)
+..+...=+++++++||| .+.
T Consensus 103 ~l~~~S~rnvtvnarn~~g~v~ 124 (292)
T KOG3950|consen 103 PLYLQSARNVTVNARNPNGKVT 124 (292)
T ss_pred ceEEEeccCeeEEccCCCCcee
Confidence 346777778899999999 764
No 11
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=81.61 E-value=17 Score=27.00 Aligned_cols=58 Identities=17% Similarity=0.012 Sum_probs=38.9
Q ss_pred EEEEEEEEeeeeeecCcceeEEEEEEEEEEEECCCceeEEEeccEEEEE-ECCEEEEeeee
Q 044545 44 ITAKPVDLEKINLLFFPTIQLNVTLGVVVTVDNRNYGGFKYQNGTAYVS-YHGVVVAEAPV 103 (191)
Q Consensus 44 ~~v~s~~l~~~~~~~~~~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~-Y~g~~lg~~~v 103 (191)
-.++.+++.+..+...+ .-+-.+.++.+++|.......|-..+++++ -+|+.+++-.+
T Consensus 48 ~~~~~l~i~~~~~~~~~--~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVP--DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEeec--CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEE
Confidence 44555555544433211 223445667799999999999999999988 56888887666
No 12
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=77.84 E-value=11 Score=28.97 Aligned_cols=35 Identities=14% Similarity=-0.053 Sum_probs=17.3
Q ss_pred CcccccccCceEEehHHHHHHHHHHHHHHhheeeEe
Q 044545 2 VCGKRSSKCLKCCCGITSILLIIVLIVLIILFFTLF 37 (191)
Q Consensus 2 ~~~~~~~r~~~~c~~~~~~~li~~~~i~~il~~lv~ 37 (191)
+.+.+++++.++..+..+++++++++. +..+|+..
T Consensus 8 ~~~~~~~k~~~~I~liv~ivl~~~a~~-~~~~~~~~ 42 (159)
T COG1580 8 GAPAKKKKKSLWILLIVLIVLLALAGA-GYFFWFGS 42 (159)
T ss_pred CCCccCCCceeehHHHHHHHHHHHHHH-HHHHhhhc
Confidence 345555666555555555444334333 44456554
No 13
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=74.24 E-value=1.6 Score=25.01 Aligned_cols=21 Identities=19% Similarity=0.577 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhheeeEee
Q 044545 18 TSILLIIVLIVLIILFFTLFK 38 (191)
Q Consensus 18 ~~~~li~~~~i~~il~~lv~r 38 (191)
.+++++++.+|.++++|+++-
T Consensus 13 ~l~~llflv~imliif~f~le 33 (43)
T PF11395_consen 13 FLSFLLFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455566666676777776654
No 14
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.73 E-value=1.5 Score=34.24 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=24.7
Q ss_pred ceEEehHHHHHHHHHHHHHHhheeeEeecCCCeEEEEEEEE
Q 044545 11 LKCCCGITSILLIIVLIVLIILFFTLFKPKEPKITAKPVDL 51 (191)
Q Consensus 11 ~~~c~~~~~~~li~~~~i~~il~~lv~rP~~P~~~v~s~~l 51 (191)
+++.|.+.+++++++++ ++ +..++.|+.|..++.+.+=
T Consensus 11 WKw~f~iLLAln~l~~~--~i-~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 11 WKWLFFILLALNTLLAV--LI-ALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHHHHHH--Hh-heeeccCCCCCchhhccCc
Confidence 55666666666555552 22 3468899998888877765
No 15
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=73.20 E-value=34 Score=25.08 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHh-heeeEeecCCCeEEEEEEEEeeeeeecCcceeEEEEEEEEEEEECCC
Q 044545 19 SILLIIVLIVLII-LFFTLFKPKEPKITAKPVDLEKINLLFFPTIQLNVTLGVVVTVDNRN 78 (191)
Q Consensus 19 ~~~li~~~~i~~i-l~~lv~rP~~P~~~v~s~~l~~~~~~~~~~~~l~~~l~~~v~v~NPN 78 (191)
++.+++++++.++ ..|+.-++++|.+.+......+-. ...+-+-++++|--
T Consensus 10 Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~~---------~gqyyVpF~V~N~g 61 (122)
T TIGR02588 10 ISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERMQ---------TGQYYVPFAIHNLG 61 (122)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEEe---------CCEEEEEEEEEeCC
Confidence 3344444444333 346667778999988877765432 22344556888876
No 16
>PRK05529 cell division protein FtsQ; Provisional
Probab=73.10 E-value=5.7 Score=32.69 Aligned_cols=16 Identities=6% Similarity=0.216 Sum_probs=13.4
Q ss_pred CCeEEEEEEEEeeeee
Q 044545 41 EPKITAKPVDLEKINL 56 (191)
Q Consensus 41 ~P~~~v~s~~l~~~~~ 56 (191)
.|-|.|+++.+++-..
T Consensus 58 Sp~~~v~~I~V~Gn~~ 73 (255)
T PRK05529 58 SPLLALRSIEVAGNMR 73 (255)
T ss_pred CCceEEEEEEEECCcc
Confidence 5999999999987653
No 17
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=71.64 E-value=0.93 Score=28.79 Aligned_cols=15 Identities=7% Similarity=0.069 Sum_probs=7.3
Q ss_pred cccCceEEehHHHHH
Q 044545 7 SSKCLKCCCGITSIL 21 (191)
Q Consensus 7 ~~r~~~~c~~~~~~~ 21 (191)
|+|+|..|.++.+++
T Consensus 28 RrRrc~~~v~~v~~~ 42 (60)
T PF06072_consen 28 RRRRCRLAVAIVFAV 42 (60)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455455555444
No 18
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=70.59 E-value=19 Score=26.79 Aligned_cols=53 Identities=17% Similarity=-0.014 Sum_probs=35.1
Q ss_pred ecCCCeEEEEEEEEeeeeeecCcceeEEEEEEEEEEEECCCceeEEEeccEEEEEECCEEEEe
Q 044545 38 KPKEPKITAKPVDLEKINLLFFPTIQLNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAE 100 (191)
Q Consensus 38 rP~~P~~~v~s~~l~~~~~~~~~~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~ 100 (191)
.-++|+.++.+..- +. .+-++.+..+++|-.+..+..=..++.+..+++..++
T Consensus 44 ~~~~~~~~~~~~~~--l~--------~~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 44 YLKKIELTLTSQKR--LQ--------YSESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGN 96 (149)
T ss_pred hcCCceEEEeeeee--ee--------eccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCc
Confidence 34456666555442 22 2344566779999999888888888888886654444
No 19
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=70.51 E-value=5.2 Score=30.45 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=20.2
Q ss_pred cCceEEehHHHHHHHHHHHHHHhheeeEeecCCCeE
Q 044545 9 KCLKCCCGITSILLIIVLIVLIILFFTLFKPKEPKI 44 (191)
Q Consensus 9 r~~~~c~~~~~~~li~~~~i~~il~~lv~rP~~P~~ 44 (191)
|...+-|++.+...++++++ ++++|+..|+|.=+|
T Consensus 48 knIVIGvVVGVGg~ill~il-~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGIL-ALVFIFCIRRKKTDF 82 (154)
T ss_pred ccEEEEEEecccHHHHHHHH-HhheeEEEecccCcc
Confidence 44556666655444455444 444677888877543
No 20
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=68.26 E-value=69 Score=26.64 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=10.9
Q ss_pred eEEEEEEEEEEEECCC-c
Q 044545 63 QLNVTLGVVVTVDNRN-Y 79 (191)
Q Consensus 63 ~l~~~l~~~v~v~NPN-~ 79 (191)
.+..+=++++.++|+| .
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 3444445677788888 5
No 21
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=60.44 E-value=36 Score=23.61 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=37.0
Q ss_pred ceeEEEEEEEEEEEECCCce---eEEEeccEEEEEECCEEEE--eeeeCCCcccCCCceeEEEEEE
Q 044545 61 TIQLNVTLGVVVTVDNRNYG---GFKYQNGTAYVSYHGVVVA--EAPVEDGRIPARGKQNISSSLT 121 (191)
Q Consensus 61 ~~~l~~~l~~~v~v~NPN~~---~i~y~~~~~~v~Y~g~~lg--~~~vp~~~~~~~~~~~~~~~~~ 121 (191)
...+.-++++.+++.||.-. .+...=....++|.|.... .-.......+|+++..+...+.
T Consensus 10 ~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 10 DPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp EEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred CccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 34566678888999999822 2444434566688887653 3344556677787777665553
No 22
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=60.21 E-value=46 Score=26.74 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=31.3
Q ss_pred ceeEEEEEEEEEEEECCCceeEEE--eccEEEEEECCEEEE
Q 044545 61 TIQLNVTLGVVVTVDNRNYGGFKY--QNGTAYVSYHGVVVA 99 (191)
Q Consensus 61 ~~~l~~~l~~~v~v~NPN~~~i~y--~~~~~~v~Y~g~~lg 99 (191)
...+...-+.++.++=|||+.+.+ +..+..++|+|..+.
T Consensus 34 gqklq~~~~~~v~v~RPdklr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 34 GQKLQFSSSGTVTVQRPDKLRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred CceEEEEEEEEEEEeCCCeEEEEEEcCCcceEEEECCCEEE
Confidence 345666668899999999888888 467888999998765
No 23
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=54.94 E-value=7.4 Score=23.47 Aligned_cols=16 Identities=13% Similarity=0.615 Sum_probs=8.8
Q ss_pred HHHHHHhheeeEeecCC
Q 044545 25 VLIVLIILFFTLFKPKE 41 (191)
Q Consensus 25 ~~~i~~il~~lv~rP~~ 41 (191)
+++.+++++| +++|+.
T Consensus 19 ~~~F~gi~~w-~~~~~~ 34 (49)
T PF05545_consen 19 FVFFIGIVIW-AYRPRN 34 (49)
T ss_pred HHHHHHHHHH-HHcccc
Confidence 3333344445 788884
No 24
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=54.81 E-value=28 Score=25.15 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=18.8
Q ss_pred EEEEEEEEEEECCCceeEEEeccEEE
Q 044545 65 NVTLGVVVTVDNRNYGGFKYQNGTAY 90 (191)
Q Consensus 65 ~~~l~~~v~v~NPN~~~i~y~~~~~~ 90 (191)
..++..++.+.||..+++..++....
T Consensus 99 g~~~~~~~~l~NPS~~ti~lG~v~~~ 124 (125)
T PF12505_consen 99 GINLNATVTLPNPSPLTIDLGNVTLN 124 (125)
T ss_pred cEEEEEEEEEcCCCeEEEEeccEEEe
Confidence 34557778889999888877766544
No 25
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=54.32 E-value=8.7 Score=23.31 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=8.8
Q ss_pred HHHHHhheeeEeecCC
Q 044545 26 LIVLIILFFTLFKPKE 41 (191)
Q Consensus 26 ~~i~~il~~lv~rP~~ 41 (191)
++-+.+++| +|+|+.
T Consensus 21 ~~Figiv~w-a~~p~~ 35 (48)
T cd01324 21 LFFLGVVVW-AFRPGR 35 (48)
T ss_pred HHHHHHHHH-HhCCCc
Confidence 333444455 889985
No 26
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=53.37 E-value=8.9 Score=26.79 Aligned_cols=16 Identities=6% Similarity=0.139 Sum_probs=8.5
Q ss_pred HHHHHHHhheeeEeec
Q 044545 24 IVLIVLIILFFTLFKP 39 (191)
Q Consensus 24 ~~~~i~~il~~lv~rP 39 (191)
+.++++++.||+++|=
T Consensus 79 v~~lv~~l~w~f~~r~ 94 (96)
T PTZ00382 79 VGGLVGFLCWWFVCRG 94 (96)
T ss_pred HHHHHHHHhheeEEee
Confidence 3344445556666663
No 27
>PF14927 Neurensin: Neurensin
Probab=52.78 E-value=10 Score=28.52 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhheeeEeecCCCeEE
Q 044545 19 SILLIIVLIVLIILFFTLFKPKEPKIT 45 (191)
Q Consensus 19 ~~~li~~~~i~~il~~lv~rP~~P~~~ 45 (191)
.+++++++++++++.|++ |++++..
T Consensus 51 g~l~Ll~Gi~~l~vgY~v--P~~~e~~ 75 (140)
T PF14927_consen 51 GLLLLLLGIVALTVGYLV--PPKIEVF 75 (140)
T ss_pred HHHHHHHHHHHHHhhccc--CCcceec
Confidence 334456666677777765 7555544
No 28
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=50.26 E-value=18 Score=23.46 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=12.9
Q ss_pred HHHHHHHHhheeeEeecC
Q 044545 23 IIVLIVLIILFFTLFKPK 40 (191)
Q Consensus 23 i~~~~i~~il~~lv~rP~ 40 (191)
+.+++.+.+..|++.+|+
T Consensus 11 ~avaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 11 VAVAAAAGAATWVIVQPR 28 (66)
T ss_pred HHHHhhhceeEEEEECCC
Confidence 335555666789899998
No 29
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=49.93 E-value=22 Score=26.49 Aligned_cols=17 Identities=0% Similarity=0.067 Sum_probs=7.7
Q ss_pred HHHHHHHhheeeEeecC
Q 044545 24 IVLIVLIILFFTLFKPK 40 (191)
Q Consensus 24 ~~~~i~~il~~lv~rP~ 40 (191)
+++++.+..+|+..++.
T Consensus 15 ~l~~~g~~~~~~~~~~~ 31 (142)
T PRK07718 15 VIALIGTAALVLVMGFS 31 (142)
T ss_pred HHHHHHHHHHhhhcccC
Confidence 33333333345566554
No 30
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=49.10 E-value=1.1e+02 Score=22.66 Aligned_cols=86 Identities=19% Similarity=0.140 Sum_probs=50.5
Q ss_pred CCeEEEEEEEEeeeeeecCcceeEEEEEEEEEEEECCCceeEEEeccEEEEEECC--EEEEeeeeCCCcccCCCceeEEE
Q 044545 41 EPKITAKPVDLEKINLLFFPTIQLNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHG--VVVAEAPVEDGRIPARGKQNISS 118 (191)
Q Consensus 41 ~P~~~v~s~~l~~~~~~~~~~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g--~~lg~~~vp~~~~~~~~~~~~~~ 118 (191)
.|++.+.++.....+ ..-.+.+.++||.-.-+.=-.+++.++..| ..+.......+..-|.+.-.+..
T Consensus 27 ~p~L~l~~v~~~~~n----------~~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i 96 (140)
T PF11797_consen 27 PPKLKLGKVKPGQIN----------GRNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPI 96 (140)
T ss_pred CcccEEeeeeeeEEC----------CeeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEe
Confidence 566666666655443 334567788999943333334566677766 36777777777777776655433
Q ss_pred EEEEeeeeeccCccccccccCCeEEEEEEE
Q 044545 119 SLTIFADKLISNSNFLGDILSGVMNFSSTT 148 (191)
Q Consensus 119 ~~~~~~~~v~~~~~l~~d~~~G~v~l~~~~ 148 (191)
.+ .+ +.+..|...+++.+
T Consensus 97 ~~--~~----------~~lk~G~Y~l~~~~ 114 (140)
T PF11797_consen 97 PL--GG----------KKLKPGKYTLKITA 114 (140)
T ss_pred cC--CC----------cCccCCEEEEEEEE
Confidence 22 22 13457776665543
No 31
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=48.23 E-value=56 Score=24.81 Aligned_cols=15 Identities=0% Similarity=-0.323 Sum_probs=7.4
Q ss_pred EEEeccEEEEEECCE
Q 044545 82 FKYQNGTAYVSYHGV 96 (191)
Q Consensus 82 i~y~~~~~~v~Y~g~ 96 (191)
-+|=...+.+-+.+.
T Consensus 78 ~rylkv~i~L~~~~~ 92 (162)
T PRK07021 78 DRVLYVGLTLRLPDE 92 (162)
T ss_pred ceEEEEEEEEEECCH
Confidence 345445555555443
No 32
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=46.32 E-value=6.6 Score=27.93 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=0.0
Q ss_pred ccCceEEehHH
Q 044545 8 SKCLKCCCGIT 18 (191)
Q Consensus 8 ~r~~~~c~~~~ 18 (191)
+||..+|+.++
T Consensus 24 ~rR~~k~~~~i 34 (106)
T PF11837_consen 24 RRRPLKCLAAI 34 (106)
T ss_dssp -----------
T ss_pred cCCcchhHHHH
Confidence 33333455444
No 33
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=45.40 E-value=94 Score=21.02 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=30.9
Q ss_pred EEEEEEEEEEEECCCceeEEEeccEEEEEECCEEEEeeeeCCCcccCCCceeEEEEEE
Q 044545 64 LNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPVEDGRIPARGKQNISSSLT 121 (191)
Q Consensus 64 l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~~~~~~~~~~~~~~~~~ 121 (191)
........++++|......+|.=.... ..+..+ ...-+++...++.+..+.+.+.
T Consensus 18 ~g~~~~~~v~l~N~s~~p~~f~v~~~~--~~~~~~-~v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 18 VGQTYSRTVTLTNTSSIPARFRVRQPE--SLSSFF-SVEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred cCCEEEEEEEEEECCCCCEEEEEEeCC--cCCCCE-EEECCCCEECCCCEEEEEEEEE
Confidence 344556778999998555555311000 011111 2233566788888888877776
No 34
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=43.07 E-value=76 Score=23.37 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=32.5
Q ss_pred eEEEEEEEEEEEECCC-ceeEEEeccEEEEEEC--CEEEEeeeeCCCcccCCCceeEEE
Q 044545 63 QLNVTLGVVVTVDNRN-YGGFKYQNGTAYVSYH--GVVVAEAPVEDGRIPARGKQNISS 118 (191)
Q Consensus 63 ~l~~~l~~~v~v~NPN-~~~i~y~~~~~~v~Y~--g~~lg~~~vp~~~~~~~~~~~~~~ 118 (191)
....+|++++++||.+ .-.++-.+.+ ||+ |..+-+---.|.+.+|-++..+.+
T Consensus 20 ~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 20 HRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFVV 75 (125)
T ss_pred CceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEEE
Confidence 4456677889999999 6666554322 443 555544444566677777766543
No 35
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=42.73 E-value=13 Score=26.89 Aligned_cols=11 Identities=9% Similarity=0.368 Sum_probs=7.4
Q ss_pred eeeEeecCCCe
Q 044545 33 FFTLFKPKEPK 43 (191)
Q Consensus 33 ~~lv~rP~~P~ 43 (191)
+|+.+||+.=+
T Consensus 16 ~yf~iRPQkKr 26 (113)
T PRK06531 16 IFFMQRQQKKQ 26 (113)
T ss_pred HHheechHHHH
Confidence 45579997644
No 36
>CHL00031 psbT photosystem II protein T
Probab=42.01 E-value=24 Score=19.64 Aligned_cols=17 Identities=41% Similarity=0.805 Sum_probs=9.5
Q ss_pred HHHhheeeEeecCCCeE
Q 044545 28 VLIILFFTLFKPKEPKI 44 (191)
Q Consensus 28 i~~il~~lv~rP~~P~~ 44 (191)
.+.++++.++--.+|++
T Consensus 13 tlgilFFAI~FRePPri 29 (33)
T CHL00031 13 TLGIIFFAIFFREPPKV 29 (33)
T ss_pred HHHHHHHhheecCCCCC
Confidence 33444555665667765
No 37
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=40.86 E-value=22 Score=19.49 Aligned_cols=16 Identities=44% Similarity=0.754 Sum_probs=8.7
Q ss_pred HHhheeeEeecCCCeE
Q 044545 29 LIILFFTLFKPKEPKI 44 (191)
Q Consensus 29 ~~il~~lv~rP~~P~~ 44 (191)
+.++++.++--.+|++
T Consensus 14 lgiiFFAIfFRepPri 29 (31)
T PRK11875 14 LVTLFFAIAFRDPPKI 29 (31)
T ss_pred HHHHHHhhhccCCCCC
Confidence 3444555555566764
No 38
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=39.46 E-value=16 Score=25.71 Aligned_cols=23 Identities=22% Similarity=0.779 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhheeeEeecCCCe
Q 044545 21 LLIIVLIVLIILFFTLFKPKEPK 43 (191)
Q Consensus 21 ~li~~~~i~~il~~lv~rP~~P~ 43 (191)
.++.++++.++.+|+++||+.=+
T Consensus 11 ~ll~~vl~~~ifyFli~RPQrKr 33 (97)
T COG1862 11 LLLPLVLIFAIFYFLIIRPQRKR 33 (97)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHH
Confidence 33444445555577799997543
No 39
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=39.20 E-value=1.7e+02 Score=22.29 Aligned_cols=14 Identities=7% Similarity=0.071 Sum_probs=7.2
Q ss_pred EEeccEEEEEECCE
Q 044545 83 KYQNGTAYVSYHGV 96 (191)
Q Consensus 83 ~y~~~~~~v~Y~g~ 96 (191)
+|=...+.+-+++.
T Consensus 87 ryLkv~i~L~~~~~ 100 (166)
T PRK12785 87 QYLKLKVVLEVKDE 100 (166)
T ss_pred eEEEEEEEEEECCH
Confidence 55555555555543
No 40
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=38.58 E-value=1.1e+02 Score=20.05 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=31.5
Q ss_pred EEEEEEEEEEECCCceeEEEeccEEEEEECCEEEEeeeeCCCcccCCCceeEEEEEEE
Q 044545 65 NVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPVEDGRIPARGKQNISSSLTI 122 (191)
Q Consensus 65 ~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~~~~~~~~~~~~~~~~~~ 122 (191)
.-.++++++++|.-... -+...+.++.+|..++...++ ..+++++..+..++..
T Consensus 18 g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i~--~L~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTIP--SLAPGESETVTFTWTP 71 (101)
T ss_dssp TSEEEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEES--EB-TTEEEEEEEEEE-
T ss_pred CCEEEEEEEEEECCCCC--CCCEEEEEEECCceeccEEEC--CcCCCcEEEEEEEEEe
Confidence 34556677889975322 334566677788888777774 3445556665555544
No 41
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.13 E-value=32 Score=26.18 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=12.8
Q ss_pred ceEEehHHHHHHHHHHHHHHhheeeEeec
Q 044545 11 LKCCCGITSILLIIVLIVLIILFFTLFKP 39 (191)
Q Consensus 11 ~~~c~~~~~~~li~~~~i~~il~~lv~rP 39 (191)
.++..+++.+|+.+++.++.. +|....|
T Consensus 6 ~~~i~ii~viflai~~s~~~~-~~~s~~P 33 (161)
T COG5353 6 LIIIIIILVIFLAIILSIALF-FWKSMKP 33 (161)
T ss_pred eeeehhHHHHHHHHHHHHHHH-HhHhcCc
Confidence 333334444444444444333 5655555
No 42
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=35.91 E-value=17 Score=26.13 Aligned_cols=15 Identities=0% Similarity=-0.020 Sum_probs=9.4
Q ss_pred HHhheeeEeecCCCe
Q 044545 29 LIILFFTLFKPKEPK 43 (191)
Q Consensus 29 ~~il~~lv~rP~~P~ 43 (191)
.++++|+.+||+.=+
T Consensus 14 ~~i~yF~~iRPQkKr 28 (109)
T PRK05886 14 MGGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHHccHHHHH
Confidence 344466788997544
No 43
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=35.51 E-value=48 Score=23.24 Aligned_cols=23 Identities=17% Similarity=0.521 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhheeeEeecC
Q 044545 18 TSILLIIVLIVLIILFFTLFKPK 40 (191)
Q Consensus 18 ~~~~li~~~~i~~il~~lv~rP~ 40 (191)
.++++.+++++-+|.+|.++|=|
T Consensus 68 lls~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 68 LLSFVCILVILYAIYYFVILRER 90 (101)
T ss_pred HHHHHHHHHHHhhheEEEEEecc
Confidence 33333334444344445555533
No 44
>PHA03049 IMV membrane protein; Provisional
Probab=35.33 E-value=16 Score=23.73 Aligned_cols=21 Identities=24% Similarity=0.716 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhheeeEeecC
Q 044545 20 ILLIIVLIVLIILFFTLFKPK 40 (191)
Q Consensus 20 ~~li~~~~i~~il~~lv~rP~ 40 (191)
+++++.++|++++.|.+|+-+
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444567777643
No 45
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=34.78 E-value=19 Score=29.13 Aligned_cols=15 Identities=7% Similarity=-0.062 Sum_probs=6.6
Q ss_pred ccCceEEehHHHHHH
Q 044545 8 SKCLKCCCGITSILL 22 (191)
Q Consensus 8 ~r~~~~c~~~~~~~l 22 (191)
+|+..+.+-++++++
T Consensus 9 rRK~N~iLNiaI~IV 23 (217)
T PF07423_consen 9 RRKTNKILNIAIGIV 23 (217)
T ss_pred hhhhhhhHHHHHHHH
Confidence 344444444444443
No 46
>PF06835 LptC: Lipopolysaccharide-assembly, LptC-related; InterPro: IPR010664 This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The cell envelope of Gram-negative bacteria consists of an inner (IM) and an outer membrane (OM) separated by an aqueous compartment, the periplasm, which contains the peptidoglycan layer. The OM is an asymmetric bilayer, with phospholipids in the inner leaflet and lipopolysaccharides (LPS) facing outward [, ]. The OM is an effective permeability barrier that protects the cells from toxic compounds, such as antibiotics and detergents, thus allowing bacteria to inhabit several different and often hostile environments. LPS is responsible for the permeability properties of the OM. LPS consists of the lipid A moiety (a glucosamine-based phospholipid) linked to the short core oligosaccharide and the distal O-antigen polysaccharide chain. The core oligosaccharide can be further divided into an inner core, composed of 3-deoxy-D-mannooctulosanate (KDO) and heptose, and an outer core, which has a somewhat variable structure. LPS is essential in most Gram-negative bacteria, with the notable exception of Neisseria meningitidis. The biogenesis of the OM implies that the individual components are transported from the site of synthesis to their final destination outside the IM by crossing both hydrophilic and hydrophobic compartments. The machinery and the energy source that drive this process are not yet fully understood. The lipid A-core moiety and the O-antigen repeat units are synthesized at the cytoplasmic face of the IM and are separately exported via two independent transport systems, namely, the O-antigen transporter Wzx (RfbX) [, ] and the ATP binding cassette (ABC) transporter MsbA that flips the lipid A-core moiety from the inner leaflet to the outer leaflet of the IM [, , ]. O-antigen repeat units are then polymerised in the periplasm by the Wzy polymerase and ligated to the lipid A-core moiety by the WaaL ligase [see, , ]. The LPS transport machinery is composed of LptA, LptB, LptC, LptD, LptE. This supported by the fact, that depletion of any of one of these proteins blocks the LPS assembly pathway and results in very similar OM biogenesis defects. Moreover, the location of at least one of these five proteins in every cellular compartment suggests a model for how the LPS assembly pathway is organised and ordered in space []. Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [].; PDB: 3MY2_A.
Probab=34.58 E-value=1.9e+02 Score=21.30 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=13.0
Q ss_pred EEEEEEEEEEEECCCceeEEEeccEEEEEECCE
Q 044545 64 LNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGV 96 (191)
Q Consensus 64 l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~ 96 (191)
+...++..=.-++||.-..+.+...+..+-++.
T Consensus 51 ~~~~l~A~~~~~~~~~~~~~l~~p~~~~~~~~~ 83 (176)
T PF06835_consen 51 LQWKLTAERAEHYPNSDTVELEDPSLIIYDDDG 83 (176)
T ss_dssp --EEEE-SSEEEETTTTEEEEES-EEEEE-TT-
T ss_pred EEEEEEEeEEEEecCCCcEEEeccEEEEEeCCC
Confidence 444444444455665223444555555544443
No 47
>PF14055 NVEALA: NVEALA protein
Probab=34.44 E-value=19 Score=23.11 Aligned_cols=26 Identities=4% Similarity=0.300 Sum_probs=18.4
Q ss_pred HHhheeeEeecCCCeEEEEEEEEeee
Q 044545 29 LIILFFTLFKPKEPKITAKPVDLEKI 54 (191)
Q Consensus 29 ~~il~~lv~rP~~P~~~v~s~~l~~~ 54 (191)
+++..|-+++.+.-+..+.++.+.|.
T Consensus 15 ~~~ag~~~~~~~~~~~~lsdL~L~NV 40 (65)
T PF14055_consen 15 AAVAGYNVYQSQNKEVNLSDLALANV 40 (65)
T ss_pred hhheeeeEEEeccCccccchHHHHhH
Confidence 45557778888777777777777664
No 48
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=34.14 E-value=1.2e+02 Score=23.63 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=6.6
Q ss_pred eecCCCeEEEE
Q 044545 37 FKPKEPKITAK 47 (191)
Q Consensus 37 ~rP~~P~~~v~ 47 (191)
+.|..|..+++
T Consensus 32 ~~~~~~~~~i~ 42 (175)
T PF04573_consen 32 FHPPSPSVSIS 42 (175)
T ss_pred ccCCCCceEEE
Confidence 56666665554
No 49
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=33.16 E-value=89 Score=20.91 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=23.1
Q ss_pred CceeEEEeccEEEEEECCEEEEeeeeCCC
Q 044545 78 NYGGFKYQNGTAYVSYHGVVVAEAPVEDG 106 (191)
Q Consensus 78 N~~~i~y~~~~~~v~Y~g~~lg~~~vp~~ 106 (191)
|++.-+|.+....|++.+..||...++..
T Consensus 8 d~V~gkf~ng~l~LY~~~e~IG~~~~~~~ 36 (76)
T PF10830_consen 8 DKVTGKFKNGGLELYHDNEMIGEIYMTEE 36 (76)
T ss_pred cceEEEecCCcEEEEeccceeeeEccCCC
Confidence 56666778889999999999999777643
No 50
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=32.77 E-value=20 Score=20.01 Aligned_cols=14 Identities=7% Similarity=0.470 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhe
Q 044545 20 ILLIIVLIVLIILF 33 (191)
Q Consensus 20 ~~li~~~~i~~il~ 33 (191)
+++.++++.+++.|
T Consensus 10 ~vv~iLt~~ILvFW 23 (34)
T PF08113_consen 10 GVVMILTAFILVFW 23 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHH
Confidence 34445555555543
No 51
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=32.30 E-value=60 Score=25.42 Aligned_cols=18 Identities=44% Similarity=1.019 Sum_probs=11.2
Q ss_pred HHHHHHHhheeeEeecCCC
Q 044545 24 IVLIVLIILFFTLFKPKEP 42 (191)
Q Consensus 24 ~~~~i~~il~~lv~rP~~P 42 (191)
++++++. ++..+++|+.|
T Consensus 14 ~l~~~~~-~~~~~~~~~~~ 31 (187)
T PF09911_consen 14 NLAFVIV-VFFRLFQPSEP 31 (187)
T ss_pred HHHHHhh-eeeEEEccCCC
Confidence 3333333 35679999977
No 52
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=31.01 E-value=36 Score=23.10 Aligned_cols=17 Identities=18% Similarity=0.876 Sum_probs=10.0
Q ss_pred HHHHHhheeeEeecCCC
Q 044545 26 LIVLIILFFTLFKPKEP 42 (191)
Q Consensus 26 ~~i~~il~~lv~rP~~P 42 (191)
++++++.+|+..||+.=
T Consensus 10 vv~~~i~yf~~~rpqkK 26 (84)
T TIGR00739 10 VLIFLIFYFLIIRPQRK 26 (84)
T ss_pred HHHHHHHHHheechHHH
Confidence 33344446678888643
No 53
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=30.07 E-value=63 Score=24.74 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=12.3
Q ss_pred HHHHHHHHhheeeEe---ecCCCeEEEE
Q 044545 23 IIVLIVLIILFFTLF---KPKEPKITAK 47 (191)
Q Consensus 23 i~~~~i~~il~~lv~---rP~~P~~~v~ 47 (191)
++++++++..+|..- .|++|++++.
T Consensus 13 V~~~a~~g~~~~~~~~~~~p~~p~It~~ 40 (161)
T PF10969_consen 13 VVAAAVVGVGWWQLRRGSDPQDPEITAY 40 (161)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEEE
Confidence 333444444345433 3556777765
No 54
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=29.60 E-value=12 Score=28.57 Aligned_cols=18 Identities=22% Similarity=0.724 Sum_probs=11.8
Q ss_pred HHhheeeEeecCCCeEEE
Q 044545 29 LIILFFTLFKPKEPKITA 46 (191)
Q Consensus 29 ~~il~~lv~rP~~P~~~v 46 (191)
.++++|.++.-++|++.-
T Consensus 118 ~l~l~~gly~~r~P~~R~ 135 (156)
T PF08372_consen 118 VLVLIWGLYKLRHPRFRN 135 (156)
T ss_pred HHHHHHHHHHhcCccccC
Confidence 344456777777788764
No 55
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.17 E-value=1.1e+02 Score=24.91 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=26.0
Q ss_pred EEEEECCCceeEEEeccEEEEEECCEEEEeeeeCCCcccCCCceeEE
Q 044545 71 VVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPVEDGRIPARGKQNIS 117 (191)
Q Consensus 71 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~~~~~~~~~~~~~ 117 (191)
.++++||--..+.+.+.++.. +|..++ ....++.++++..+.
T Consensus 166 ~l~v~Nptpy~vtl~~~~l~~--~~~~~~---~~~~mv~P~s~~~~~ 207 (235)
T COG3121 166 LLTVKNPTPYYVTLANLTLNV--GGRKLG---LNSGMVAPFSTRQFP 207 (235)
T ss_pred EEEEECCCCcEEEEEEEEEee--CceecC---CCcceECCCccceee
Confidence 588999996666666555555 666665 334555555555543
No 56
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=28.79 E-value=23 Score=30.05 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=14.7
Q ss_pred eeEeecCCCeEEEEEEEEeeeeee
Q 044545 34 FTLFKPKEPKITAKPVDLEKINLL 57 (191)
Q Consensus 34 ~lv~rP~~P~~~v~s~~l~~~~~~ 57 (191)
+.-+-|+.|++. ++..=.++.+.
T Consensus 70 ~~tidp~~P~~~-~~~~~PGl~~~ 92 (300)
T KOG3927|consen 70 LQTIDPKVPKYK-DSGANPGLSFR 92 (300)
T ss_pred HHhcCCCCCccc-ccCCCCceeec
Confidence 345679999999 65333455544
No 57
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=28.08 E-value=24 Score=25.33 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=7.2
Q ss_pred eeeEeecC--CCeEEE
Q 044545 33 FFTLFKPK--EPKITA 46 (191)
Q Consensus 33 ~~lv~rP~--~P~~~v 46 (191)
+|+++-=+ .|.|.|
T Consensus 13 ~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 13 FWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHccccCceEEEE
Confidence 45554444 366654
No 58
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=27.56 E-value=1.6e+02 Score=22.66 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=17.2
Q ss_pred EEEEEECCC-ceeEEEeccEEEEEECCE-EEEeeee
Q 044545 70 VVVTVDNRN-YGGFKYQNGTAYVSYHGV-VVAEAPV 103 (191)
Q Consensus 70 ~~v~v~NPN-~~~i~y~~~~~~v~Y~g~-~lg~~~v 103 (191)
+.+.+...+ .+.+.|+..--+++=.|+ .+.++.+
T Consensus 80 v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~ 115 (159)
T PRK13150 80 VNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTL 115 (159)
T ss_pred EEEEEEcCCcEEEEEEeccCCccccCCCeEEEEEEE
Confidence 344444445 555666555555444443 3455555
No 59
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=27.29 E-value=29 Score=22.13 Aligned_cols=8 Identities=13% Similarity=0.717 Sum_probs=6.0
Q ss_pred eeEeecCC
Q 044545 34 FTLFKPKE 41 (191)
Q Consensus 34 ~lv~rP~~ 41 (191)
|.+|||+.
T Consensus 27 ~~ayr~~~ 34 (60)
T COG4736 27 YFAYRPGK 34 (60)
T ss_pred HHHhcccc
Confidence 55889975
No 60
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=27.28 E-value=28 Score=22.73 Aligned_cols=21 Identities=24% Similarity=0.695 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhheeeEeecC
Q 044545 20 ILLIIVLIVLIILFFTLFKPK 40 (191)
Q Consensus 20 ~~li~~~~i~~il~~lv~rP~ 40 (191)
+++++.+++++++.|.+|.-+
T Consensus 6 iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444457777543
No 61
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.02 E-value=85 Score=24.01 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=6.1
Q ss_pred EEeccEEEEEECC
Q 044545 83 KYQNGTAYVSYHG 95 (191)
Q Consensus 83 ~y~~~~~~v~Y~g 95 (191)
+|=...+.+.+++
T Consensus 87 ryLkv~i~l~~~d 99 (170)
T PRK05696 87 RLVQIKVQLMVRG 99 (170)
T ss_pred eEEEEEEEEEECC
Confidence 4444445554443
No 62
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.74 E-value=72 Score=24.92 Aligned_cols=7 Identities=43% Similarity=0.534 Sum_probs=2.7
Q ss_pred EeecCCC
Q 044545 36 LFKPKEP 42 (191)
Q Consensus 36 v~rP~~P 42 (191)
.+....+
T Consensus 41 ~~~~~~~ 47 (182)
T PRK08455 41 LMGSKEE 47 (182)
T ss_pred HhcCCCc
Confidence 3433333
No 63
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=26.64 E-value=35 Score=24.28 Aligned_cols=19 Identities=16% Similarity=0.682 Sum_probs=10.9
Q ss_pred HHHHHHHhheeeEeecCCC
Q 044545 24 IVLIVLIILFFTLFKPKEP 42 (191)
Q Consensus 24 ~~~~i~~il~~lv~rP~~P 42 (191)
.+++++++++|+.+||+.=
T Consensus 23 ~lvii~~i~yf~~~RpqkK 41 (106)
T PRK05585 23 PLVVFFAIFYFLIIRPQQK 41 (106)
T ss_pred HHHHHHHHHHHHhccHHHH
Confidence 3344444556678888643
No 64
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=26.45 E-value=72 Score=20.04 Aligned_cols=11 Identities=9% Similarity=0.630 Sum_probs=6.6
Q ss_pred HhheeeEeecC
Q 044545 30 IILFFTLFKPK 40 (191)
Q Consensus 30 ~il~~lv~rP~ 40 (191)
++++|+.-||+
T Consensus 46 vv~vy~kTRP~ 56 (56)
T PF15012_consen 46 VVFVYLKTRPR 56 (56)
T ss_pred hheeEEeccCC
Confidence 33457777774
No 65
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=26.31 E-value=1.1e+02 Score=24.91 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=17.7
Q ss_pred EEEECCCceeEEEeccEEEEEECCEEEEeeeeCCCcc
Q 044545 72 VTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPVEDGRI 108 (191)
Q Consensus 72 v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~~~~ 108 (191)
+.+.||..+-+.+.+.. .+|..+....++||.+
T Consensus 166 l~v~NpTPyyvtl~~l~----v~~~~~~~~mi~P~s~ 198 (228)
T PRK15188 166 LTITNPSPYYVSMVELY----SAGKKLPNTMVPPKGA 198 (228)
T ss_pred EEEECCCCcEEEEEEEE----ECCcccCCceECCCCc
Confidence 88999995545444332 2555543333444443
No 66
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=24.99 E-value=4e+02 Score=22.08 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=26.1
Q ss_pred EEEEEEECCCceeEEEeccEEEEEECCEEEEeeeeCC
Q 044545 69 GVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPVED 105 (191)
Q Consensus 69 ~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~ 105 (191)
-+..++.|+. +...-.+.+.++.+|..+|++.++.
T Consensus 169 ~l~a~~~n~~--~~~L~~G~~~v~~dg~~vG~~~l~~ 203 (317)
T PF13598_consen 169 YLVARFKNTS--GLPLLPGPVSVYRDGTFVGESRLPH 203 (317)
T ss_pred EEEEEEECCC--CCcccCCcEEEEECCEEEEeeecCC
Confidence 3445666665 3344578999999999999999876
No 67
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=24.69 E-value=39 Score=27.89 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=21.0
Q ss_pred HhheeeEeecCCCeEEEEEEEEeeee
Q 044545 30 IILFFTLFKPKEPKITAKPVDLEKIN 55 (191)
Q Consensus 30 ~il~~lv~rP~~P~~~v~s~~l~~~~ 55 (191)
+++.|....++.|.+.+..+.+++-.
T Consensus 46 ~~~~~~~~~~~~~~~~i~~v~v~Gn~ 71 (269)
T COG1589 46 LVVLWVLILLSLPYFPIRKVSVSGNN 71 (269)
T ss_pred HHHHheehhhhcCCccceEEEEecCc
Confidence 33457788899999999999999754
No 68
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=22.71 E-value=42 Score=29.25 Aligned_cols=6 Identities=33% Similarity=0.778 Sum_probs=2.6
Q ss_pred EEEEEE
Q 044545 150 LHGEVI 155 (191)
Q Consensus 150 v~~rv~ 155 (191)
+.|+|.
T Consensus 285 ~~G~V~ 290 (390)
T PRK15136 285 YTGKVV 290 (390)
T ss_pred EEEEEE
Confidence 444443
No 69
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=20.88 E-value=74 Score=25.68 Aligned_cols=12 Identities=33% Similarity=0.932 Sum_probs=6.5
Q ss_pred eeeEeecCCCeE
Q 044545 33 FFTLFKPKEPKI 44 (191)
Q Consensus 33 ~~lv~rP~~P~~ 44 (191)
+|-++|||....
T Consensus 179 YfK~~K~K~~~~ 190 (218)
T PF14283_consen 179 YFKFYKPKQEEK 190 (218)
T ss_pred EEEEeccccccc
Confidence 344666665543
No 70
>PF07509 DUF1523: Protein of unknown function (DUF1523); InterPro: IPR011088 This entry is represented by Bacteriophage phiNM3, A0EWY4 from SWISSPROT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are restricted to the Gammaproteobacteria and Epsilonproteobacteria, the function of these proteins is unknown.
Probab=20.32 E-value=4.3e+02 Score=20.65 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=17.2
Q ss_pred eecCCCeEEEEEEEEeeeeee
Q 044545 37 FKPKEPKITAKPVDLEKINLL 57 (191)
Q Consensus 37 ~rP~~P~~~v~s~~l~~~~~~ 57 (191)
--|+.=...|.+..+.+.+++
T Consensus 24 ~lP~~dvvrItgtevkR~d~~ 44 (175)
T PF07509_consen 24 TLPQYDVVRITGTEVKRMDLD 44 (175)
T ss_pred cCCcceEEEEeceEEEEecCC
Confidence 359999999999999988654
No 71
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=20.24 E-value=3.4e+02 Score=20.16 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=29.5
Q ss_pred ecCCCeEEEEEEEEeeeeeec----CcceeEEEEEEEEEEEECCC-ceeE
Q 044545 38 KPKEPKITAKPVDLEKINLLF----FPTIQLNVTLGVVVTVDNRN-YGGF 82 (191)
Q Consensus 38 rP~~P~~~v~s~~l~~~~~~~----~~~~~l~~~l~~~v~v~NPN-~~~i 82 (191)
+++.|++++..+.+.+-++.- ...+....++-+.+++.|+| ..-.
T Consensus 13 ~S~~P~~eis~~~~~~~~L~f~vyr~~G~D~Ygsfl~~i~l~d~~g~vv~ 62 (133)
T PF07680_consen 13 KSVKPKLEISDALIENGTLSFHVYRVEGPDVYGSFLIGIQLKDSTGHVVL 62 (133)
T ss_pred CCcCccEEEeeeEEeCCeEEEEEEEcCCCccCCceeeEEEEECCCCCEEE
Confidence 578899999999888644321 12233444566778888888 5533
No 72
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=20.07 E-value=64 Score=23.76 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=12.2
Q ss_pred eEEehHHHHHHHHHHHHHHhheeeEeecCCC
Q 044545 12 KCCCGITSILLIIVLIVLIILFFTLFKPKEP 42 (191)
Q Consensus 12 ~~c~~~~~~~li~~~~i~~il~~lv~rP~~P 42 (191)
++-+.+..+...++++.++. +-++=|+..|
T Consensus 89 rRplliagv~~~vLagGavA-fsivRRs~~~ 118 (133)
T PF10814_consen 89 RRPLLIAGVAVAVLAGGAVA-FSIVRRSSRP 118 (133)
T ss_pred ccchHHHHHHHHHHhccceE-EEEeecCCCC
Confidence 34444444333334443333 3344444443
No 73
>PTZ00116 signal peptidase; Provisional
Probab=20.03 E-value=3.4e+02 Score=21.39 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=10.3
Q ss_pred cCCCeEEEEEEEEeeeee
Q 044545 39 PKEPKITAKPVDLEKINL 56 (191)
Q Consensus 39 P~~P~~~v~s~~l~~~~~ 56 (191)
+.+|...++=-.+.++.+
T Consensus 36 ~~~~~~~i~v~~V~~~~~ 53 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVY 53 (185)
T ss_pred CCCceeeEEEeecccccc
Confidence 456656665455556654
Done!