Query 044545
Match_columns 191
No_of_seqs 118 out of 700
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 07:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.9 1.4E-08 4.7E-13 78.0 9.9 103 40-152 43-147 (174)
2 1xo8_A AT1G01470; structural g 98.6 8.7E-09 3E-13 77.4 1.5 102 40-151 20-123 (151)
3 3but_A Uncharacterized protein 98.2 8.4E-06 2.9E-10 60.0 9.2 64 65-128 17-81 (136)
4 3j1r_A Archaeal adhesion filam 77.1 0.77 2.6E-05 23.2 0.7 19 18-36 6-24 (26)
5 2l0d_A Cell surface protein; s 63.0 34 0.0012 23.6 9.2 68 41-121 2-70 (114)
6 3arc_T Photosystem II reaction 46.4 5.2 0.00018 21.4 0.4 15 30-44 15-29 (32)
7 3p5s_A CD38 molecule; cyclic A 42.3 5.3 0.00018 32.3 0.0 18 8-25 6-23 (278)
8 2rdd_B UPF0092 membrane protei 35.7 7.7 0.00026 21.3 -0.0 11 30-40 14-24 (37)
9 2l6w_A Beta-type platelet-deri 41.7 7.9 0.00027 21.6 0.0 12 34-45 28-39 (39)
10 2lk9_A Bone marrow stromal ant 31.8 12 0.00043 20.1 0.4 9 10-18 2-10 (35)
11 2kj1_A BM2 protein; cytoplasmi 28.7 14 0.00048 23.5 0.3 13 68-80 10-22 (89)
12 3qde_A Cellobiose phosphorylas 23.0 1.7E+02 0.0057 27.0 6.5 58 35-107 742-799 (811)
13 3eyr_A Uncharacterized lipopro 21.3 2.5E+02 0.0086 20.7 6.7 56 48-103 47-115 (178)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.87 E-value=1.4e-08 Score=77.97 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=81.3
Q ss_pred CCCeEEEEEEEEeeeeeecCcceeEEEEEEEEEEEECCCceeEEEeccEEEEEECCEEEEeeeeCC-CcccCCCceeEEE
Q 044545 40 KEPKITAKPVDLEKINLLFFPTIQLNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPVED-GRIPARGKQNISS 118 (191)
Q Consensus 40 ~~P~~~v~s~~l~~~~~~~~~~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~-~~~~~~~~~~~~~ 118 (191)
++|++++.++++.+++.. ..++.+.++++|||.+.+.+...+..+.-+|..++++..+. +.+++++++.+.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~-------~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~V 115 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDV 115 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-------SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc-------eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEE
Confidence 689999999999877643 36678889999999999999999999999999999999966 8999999999999
Q ss_pred EEEEeeeeeccCcccccccc-CCeEEEEEEEEEEE
Q 044545 119 SLTIFADKLISNSNFLGDIL-SGVMNFSSTTTLHG 152 (191)
Q Consensus 119 ~~~~~~~~v~~~~~l~~d~~-~G~v~l~~~~~v~~ 152 (191)
++++....+. ++.+++. .+.++..+++.+.+
T Consensus 116 pv~v~~~~l~---~~~~~l~~~~~i~Y~L~g~L~i 147 (174)
T 1yyc_A 116 PVKVAYSIAV---SLMKDMCTDWDIDYQLDIGLTF 147 (174)
T ss_dssp EEEESHHHHH---HTCCCCCSSEEECEEEEEEEEE
T ss_pred EEEEEHHHHH---HHHHhcCCCCccceEEEEEEEe
Confidence 9988754332 2334443 34666666554443
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.60 E-value=8.7e-09 Score=77.43 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=78.9
Q ss_pred CCCeEEEEEEEEeeeeeecCcceeEEEEEEEEEEEECCCceeEEEeccEEEEEECCEEEEeeeeC-CCcccCCCceeEEE
Q 044545 40 KEPKITAKPVDLEKINLLFFPTIQLNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPVE-DGRIPARGKQNISS 118 (191)
Q Consensus 40 ~~P~~~v~s~~l~~~~~~~~~~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp-~~~~~~~~~~~~~~ 118 (191)
++|++++.++++.+++. ...++.+.++++|||.+.+.+.+.+..+.-+|..++++..+ ++.+++++++.+.+
T Consensus 20 ~~P~v~v~~v~~~~~~~-------~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~v 92 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-------DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDI 92 (151)
T ss_dssp CSCCCBCSEEEECCCTT-------TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEE
T ss_pred CCCEEEEEEeEEeccCc-------ceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEE
Confidence 67999999999877653 24567889999999999999999999998899999999885 48999999999999
Q ss_pred EEEEeeeeeccCccccccc-cCCeEEEEEEEEEE
Q 044545 119 SLTIFADKLISNSNFLGDI-LSGVMNFSSTTTLH 151 (191)
Q Consensus 119 ~~~~~~~~v~~~~~l~~d~-~~G~v~l~~~~~v~ 151 (191)
++++....+ .++.+++ ..+.++.++++++.
T Consensus 93 pv~v~~~~l---~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 93 PVVVPYSIL---FNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp CCCEEHHHH---HHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEEHHHH---HHHHHhcccCCcccEEEEEEEE
Confidence 888774322 2333443 23577776655554
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.21 E-value=8.4e-06 Score=59.99 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=56.0
Q ss_pred EEEEEEEEEEECCCceeEEEeccEEEEEECCEEEEeeee-CCCcccCCCceeEEEEEEEeeeeec
Q 044545 65 NVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPV-EDGRIPARGKQNISSSLTIFADKLI 128 (191)
Q Consensus 65 ~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~v-p~~~~~~~~~~~~~~~~~~~~~~v~ 128 (191)
...|.+.+++.|||.+.+.++..+..++..|..+|++.. ..+.+++.+++.+.+++..+..++.
T Consensus 17 ~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~ 81 (136)
T 3but_A 17 QTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLR 81 (136)
T ss_dssp EEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHT
T ss_pred EEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhH
Confidence 456788999999999999999999999999999999875 6799999999999998888855443
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=77.07 E-value=0.77 Score=23.24 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhheeeE
Q 044545 18 TSILLIIVLIVLIILFFTL 36 (191)
Q Consensus 18 ~~~~li~~~~i~~il~~lv 36 (191)
..++++++++++.++.|+.
T Consensus 6 A~~lLIviav~aaVllylW 24 (26)
T 3j1r_A 6 ATLLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655543
No 5
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=63.02 E-value=34 Score=23.57 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=41.9
Q ss_pred CCeEEEEEEEEeeeeeecCcceeEEEEEEEEEEEECCC-ceeEEEeccEEEEEECCEEEEeeeeCCCcccCCCceeEEEE
Q 044545 41 EPKITAKPVDLEKINLLFFPTIQLNVTLGVVVTVDNRN-YGGFKYQNGTAYVSYHGVVVAEAPVEDGRIPARGKQNISSS 119 (191)
Q Consensus 41 ~P~~~v~s~~l~~~~~~~~~~~~l~~~l~~~v~v~NPN-~~~i~y~~~~~~v~Y~g~~lg~~~vp~~~~~~~~~~~~~~~ 119 (191)
.|+..+.+++-. .+.-+-..+++++++|.- ... .+..+.++-+|..++...+++ ..++.++.+.++
T Consensus 2 ~PDL~vt~itP~--------~~~~~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~v~~--LaaG~s~tv~~~ 68 (114)
T 2l0d_A 2 IPDLVPVSLTPV--------TVVPNTVNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQTVTS--LESENSTNVDFH 68 (114)
T ss_dssp CCCEEEEEEECS--------EECTTSEEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEEESC--BCBTCEEEEEEE
T ss_pred CCCcEEEeccCC--------CcCCCCeEEEEEEEEECCCCCC---CCEEEEEEECCEEEcceeccc--ccCCCEEEEEEE
Confidence 367777776321 223344456777999987 322 445677777899999988776 344555555554
Q ss_pred EE
Q 044545 120 LT 121 (191)
Q Consensus 120 ~~ 121 (191)
..
T Consensus 69 w~ 70 (114)
T 2l0d_A 69 WT 70 (114)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 6
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=46.44 E-value=5.2 Score=21.37 Aligned_cols=15 Identities=33% Similarity=0.870 Sum_probs=8.7
Q ss_pred HhheeeEeecCCCeE
Q 044545 30 IILFFTLFKPKEPKI 44 (191)
Q Consensus 30 ~il~~lv~rP~~P~~ 44 (191)
.++++.++-..+|++
T Consensus 15 giiFFAI~FRePPri 29 (32)
T 3arc_T 15 ALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHTSCCCCC
T ss_pred HHHHHhhhhcCCCCC
Confidence 333455666677765
No 7
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=42.26 E-value=5.3 Score=32.25 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred ccCceEEehHHHHHHHHH
Q 044545 8 SKCLKCCCGITSILLIIV 25 (191)
Q Consensus 8 ~r~~~~c~~~~~~~li~~ 25 (191)
.|++++|+++++++++++
T Consensus 6 ~~~~~~~l~~~~~~l~~~ 23 (278)
T 3p5s_A 6 TPRKKLCWCVLLFFLVAG 23 (278)
T ss_dssp ------------------
T ss_pred cCceEEeehHHHHHHHHH
Confidence 345555666555444433
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=35.68 E-value=7.7 Score=21.26 Aligned_cols=11 Identities=27% Similarity=1.117 Sum_probs=7.1
Q ss_pred HhheeeEeecC
Q 044545 30 IILFFTLFKPK 40 (191)
Q Consensus 30 ~il~~lv~rP~ 40 (191)
++.+|+.+||.
T Consensus 14 ~ifYFl~iRPQ 24 (37)
T 2rdd_B 14 LIFYFMILRPQ 24 (37)
T ss_dssp HHHHHHTHHHH
T ss_pred HHHHHHHhhhH
Confidence 44456777885
No 9
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=41.71 E-value=7.9 Score=21.62 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=7.9
Q ss_pred eeEeecCCCeEE
Q 044545 34 FTLFKPKEPKIT 45 (191)
Q Consensus 34 ~lv~rP~~P~~~ 45 (191)
..+.+-+.|+++
T Consensus 28 Li~~w~qKPrYe 39 (39)
T 2l6w_A 28 LIMLWQKKPRYE 39 (39)
Confidence 345667888864
No 10
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=31.76 E-value=12 Score=20.09 Aligned_cols=9 Identities=33% Similarity=0.146 Sum_probs=2.5
Q ss_pred CceEEehHH
Q 044545 10 CLKCCCGIT 18 (191)
Q Consensus 10 ~~~~c~~~~ 18 (191)
||+.-.+..
T Consensus 2 RcKL~lg~G 10 (35)
T 2lk9_A 2 RSKLLLGIG 10 (35)
T ss_dssp ---CHHHHH
T ss_pred cceeeeccc
Confidence 455444443
No 11
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=28.70 E-value=14 Score=23.52 Aligned_cols=13 Identities=8% Similarity=0.233 Sum_probs=3.9
Q ss_pred EEEEEEEECCCce
Q 044545 68 LGVVVTVDNRNYG 80 (191)
Q Consensus 68 l~~~v~v~NPN~~ 80 (191)
.++.++++|||+-
T Consensus 10 v~lki~ir~pnke 22 (89)
T 2kj1_A 10 VNMKIRIKGPNKE 22 (89)
T ss_dssp --------CCCHH
T ss_pred CceEEEecCCCHH
Confidence 4678899999954
No 12
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=22.97 E-value=1.7e+02 Score=27.01 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=32.9
Q ss_pred eEeecCCCeEEEEEEEEeeeeeecCcceeEEEEEEEEEEEECCCceeEEEeccEEEEEECCEEEEeeeeCCCc
Q 044545 35 TLFKPKEPKITAKPVDLEKINLLFFPTIQLNVTLGVVVTVDNRNYGGFKYQNGTAYVSYHGVVVAEAPVEDGR 107 (191)
Q Consensus 35 lv~rP~~P~~~v~s~~l~~~~~~~~~~~~l~~~l~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~vp~~~ 107 (191)
+.+.|..|.. .++++++ +.+. +. .+.|+++||+... +....+.-+|..+....+|-..
T Consensus 742 L~i~P~LP~~-w~~~~~~-~~~~-------g~--~~~I~v~~~~~~~----~~~~~~~~dg~~~~~~~i~~~~ 799 (811)
T 3qde_A 742 LKIDPCIPKA-WDGYKVT-RYFR-------GS--TYEITVKNPNHVS----KGVAKITVDGNEISGNILPVFN 799 (811)
T ss_dssp EEECCBCCTT-CCEEEEE-EEET-------TE--EEEEEEECTTCCS----BCEEEEEETTEECSSSBCCCCC
T ss_pred EEEeCcCCcc-cCcEEEE-EEEC-------CE--EEEEEEEccCCCC----CCcEEEEECCEECcCCeeeecC
Confidence 3456776665 5555554 2322 11 3467888998432 2345566688888655566433
No 13
>3eyr_A Uncharacterized lipoprotein YCEB; ER542 NESG X-RAY YCEB_COLI P0AB26, structural genomics, PSI- 2, protein structure initiative; 2.01A {Escherichia coli K12} PDB: 3l6i_A
Probab=21.30 E-value=2.5e+02 Score=20.70 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=30.5
Q ss_pred EEEEeeeeeecCc--ceeEEEEEEEEEEEECCC-c----------eeEEEeccEEEEEECCEEEEeeee
Q 044545 48 PVDLEKINLLFFP--TIQLNVTLGVVVTVDNRN-Y----------GGFKYQNGTAYVSYHGVVVAEAPV 103 (191)
Q Consensus 48 s~~l~~~~~~~~~--~~~l~~~l~~~v~v~NPN-~----------~~i~y~~~~~~v~Y~g~~lg~~~v 103 (191)
++++++..++.++ ...+..+.+..+.+.+|- . ...+||.-+-.+|-++-+|-+.++
T Consensus 47 ~v~L~n~~v~ig~~~~nrv~l~~~a~v~i~sl~~~~~a~l~ltl~a~p~YD~~~~AiyLk~l~l~~~~v 115 (178)
T 3eyr_A 47 HIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVDATV 115 (178)
T ss_dssp EEEEEEEEEEESSSSTTCEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEE
T ss_pred EEEEcCceEecCCCCCCEEEEEEEEEEEeccccCCcCceEEEEEEEEEEEcCCCCeEEEccceEEEEEe
Confidence 4555555554322 245555555556666552 1 124666666666666667666655
Done!