BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044550
(662 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 409 LVFLRALR-NW--IREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQY 465
LV L++LR W IR +P ++ L +LK L + + + + L L++LD+RGC
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 466 LRGLPA--GIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE 507
LR P G R + R +L D + LL +P+ I RLT L L+
Sbjct: 242 LRNYPPIFGGRAPLK-RLILKDCSNLLT-LPLDIHRLTQLEKLD 283
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 90/224 (40%), Gaps = 24/224 (10%)
Query: 419 IREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMN 478
+ + P+ +L HL++ + + +P+T + L+ L + LR LPA I L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL-ARNPLRALPASIASLNR 151
Query: 479 MRSLLNDGTYLLKYMPIGISR---------LTSLRTLEKFXXXXXXXXXXTCRLESLKNL 529
+R L L +P ++ L +L++L L++LK+L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 530 QLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEA 589
+ +R + L + H+ ++E L L L FGG +R KD L
Sbjct: 212 K-IRNSPLSALG--PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268
Query: 590 LQPPLNVE---ELEIESYRGNIFPKWLTSLTNLRELKLSLCVNC 630
L PL++ +LE RG + +L+ L L L NC
Sbjct: 269 L--PLDIHRLTQLEKLDLRGCV------NLSRLPSLIAQLPANC 304
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 16/108 (14%)
Query: 171 HVISLVGLGGI-EPFFLRLKNGLHGSKIFVTTRNESVA-RMMGSTNIISIKQ-LAEE--- 224
H SL+ L + +P+ L+ + + +I +TTR++SV +MG +++ ++ L E
Sbjct: 235 HPRSLLILDDVWDPWVLKAFD--NQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGL 292
Query: 225 ECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLR 272
E SLF + +E L I ++CKG PL +IG LLR
Sbjct: 293 EILSLFVNMK--------KEDLPAEAHSIIKECKGSPLVVSLIGALLR 332
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 400 SILSELFSKLVFLRALR---NWIREIPENV-GKLIHLKYLNLSELRIERIPETLCE-LYN 454
S+ + +F +L L L N ++ +P V KL L YLNLS +++ +P + + L
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101
Query: 455 LQKLDIRGCQYLRGLPAGI----RKLMNMRSLLNDGTYLLKYMPIGI-SRLTSLR 504
L++L + Q L+ LP G+ +L ++R N LK +P G+ RLTSL+
Sbjct: 102 LKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ----LKSVPDGVFDRLTSLQ 151
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 196 KIFVTTRNESVA-RMMGSTNIISIKQ-LAEE---ECWSLFKQLAFFGRSFEDREKLEPMG 250
+I +TTR++SV +MG ++ ++ L +E E SLF + + L
Sbjct: 259 QILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK--------KADLPEQA 310
Query: 251 RKIARKCKGLPLAAKVIGNLLRS 273
I ++CKG PL +IG LLR
Sbjct: 311 HSIIKECKGSPLVVSLIGALLRD 333
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 16/108 (14%)
Query: 171 HVISLVGLGGI-EPFFLRLKNGLHGSKIFVTTRNESVA-RMMGSTNIISIKQ-LAEE--- 224
H SL+ L + +P+ L+ + + +I +TT ++SV +MG +++ ++ L E
Sbjct: 242 HPRSLLILDDVWDPWVLKAFD--NQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGL 299
Query: 225 ECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLR 272
E SLF + +E L I ++CKG PL +IG LLR
Sbjct: 300 EILSLFVNMK--------KEDLPAEAHSIIKECKGSPLVVSLIGALLR 339
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 13/82 (15%)
Query: 196 KIFVTTRNESVA-RMMGSTNIISIKQ-LAEE---ECWSLFKQLAFFGRSFEDREKLEPMG 250
+I +TTR++SV +MG ++ ++ L +E E SLF + + L
Sbjct: 265 QILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK--------KADLPEQA 316
Query: 251 RKIARKCKGLPLAAKVIGNLLR 272
I ++CKG PL +IG LLR
Sbjct: 317 HSIIKECKGSPLVVSLIGALLR 338
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 445 IPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI-SRLTSL 503
+P+ EL NL LD+ CQ + P L +++ +LN + LK +P GI RLTSL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMASNQLKSVPDGIFDRLTSL 520
Query: 504 R 504
+
Sbjct: 521 Q 521
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 397 NRFSIL-SELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL 452
N+ ++L S +F +LV L+ L N + E+P + +L HL +L L + +++ IP
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA--- 154
Query: 453 YNLQKLDIRGCQYLRGLP--AGIRKLMNMRSLLNDGTYL 489
+L YL G P R +M +R+ + D T +
Sbjct: 155 --FDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSI 191
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 435 LNLSELRIERIPETLCELYN-LQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYM 493
LNL E R I T + + LQ+LD+ +L+GLP+G++ L ++ L+ + +
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTA-THLKGLPSGMKGLNLLKKLVLSVNHFDQLC 314
Query: 494 PIGISRLTSLRTLEKFXXXXXXXXXXTCRLESLKNLQLLRK----------CSIEGLKGL 543
I + SL L C LE L NLQ L CS++ L
Sbjct: 315 QISAANFPSLTHLYIRGNVKKLHLGVGC-LEKLGNLQTLDLSHNDIEASDCCSLQ----L 369
Query: 544 SNVSHVDEVERLQLYNKKNLLRLGLQ 569
N+SH LQ N + LGLQ
Sbjct: 370 KNLSH------LQTLNLSHNEPLGLQ 389
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 454 NLQKLDIRGCQYL-RGLPAGIRKLMNMRSLLNDG 486
NLQKL++RGC + R + A + KL ++R L G
Sbjct: 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 455 LQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFXXXXX 514
+Q+LD+ +L GLP+GI + +++ L+ + + I + SLR L
Sbjct: 279 VQELDLTAA-HLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRK 337
Query: 515 XXXXXTCRLESLKNLQLLRKCSIEGLKGLSNVSHVD----EVERLQLYNKKNLLRLGLQF 570
C LE L+NLQ L ++SH D + LQL N ++L L L +
Sbjct: 338 LDLGTRC-LEKLENLQKL------------DLSHSDIEASDCCNLQLKNLRHLQYLNLSY 384
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,384,143
Number of Sequences: 62578
Number of extensions: 596327
Number of successful extensions: 1319
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1308
Number of HSP's gapped (non-prelim): 33
length of query: 662
length of database: 14,973,337
effective HSP length: 105
effective length of query: 557
effective length of database: 8,402,647
effective search space: 4680274379
effective search space used: 4680274379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)