Query 044550
Match_columns 662
No_of_seqs 426 out of 3818
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.8E-59 1.7E-63 520.2 28.3 602 3-635 22-789 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-43 3E-48 419.1 32.0 529 98-653 133-839 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.7 1.1E-18 2.3E-23 177.4 5.9 138 148-290 1-225 (287)
4 KOG0444 Cytoskeletal regulator 99.7 5E-18 1.1E-22 174.0 -2.5 245 373-640 31-316 (1255)
5 PLN00113 leucine-rich repeat r 99.7 2.5E-16 5.4E-21 187.2 10.8 87 421-507 155-242 (968)
6 PLN00113 leucine-rich repeat r 99.6 4E-16 8.7E-21 185.4 10.3 262 373-648 117-413 (968)
7 PLN03210 Resistant to P. syrin 99.6 4.1E-15 9E-20 177.2 16.1 234 416-653 620-907 (1153)
8 KOG0444 Cytoskeletal regulator 99.6 6.2E-17 1.3E-21 166.1 -5.4 248 373-634 54-332 (1255)
9 KOG0472 Leucine-rich repeat pr 99.4 8.9E-15 1.9E-19 143.3 -1.7 217 376-628 70-286 (565)
10 KOG4194 Membrane glycoprotein 99.4 1.4E-13 3E-18 141.0 2.9 200 406-628 145-352 (873)
11 KOG0617 Ras suppressor protein 99.4 1.7E-14 3.6E-19 125.4 -3.2 157 425-628 28-184 (264)
12 KOG0472 Leucine-rich repeat pr 99.3 2.7E-14 6E-19 140.0 -5.8 214 379-629 96-309 (565)
13 KOG4194 Membrane glycoprotein 99.3 2.6E-12 5.7E-17 131.8 4.4 257 373-660 77-354 (873)
14 KOG0617 Ras suppressor protein 99.2 3.6E-13 7.9E-18 117.2 -3.7 146 374-539 33-182 (264)
15 PRK15370 E3 ubiquitin-protein 99.1 6.8E-11 1.5E-15 132.4 7.9 207 373-634 198-404 (754)
16 PRK15370 E3 ubiquitin-protein 99.1 1.7E-10 3.6E-15 129.3 10.0 205 375-634 179-383 (754)
17 KOG4658 Apoptotic ATPase [Sign 99.1 9.6E-11 2.1E-15 133.2 8.1 246 400-656 585-864 (889)
18 PRK15387 E3 ubiquitin-protein 99.1 5.2E-10 1.1E-14 124.6 13.2 35 595-629 423-457 (788)
19 KOG0618 Serine/threonine phosp 99.1 8.1E-12 1.8E-16 135.0 -1.1 38 592-629 239-276 (1081)
20 PRK15387 E3 ubiquitin-protein 99.0 2.3E-09 4.9E-14 119.6 10.5 199 406-661 261-459 (788)
21 KOG0618 Serine/threonine phosp 98.8 1E-10 2.3E-15 126.7 -5.1 203 401-628 255-463 (1081)
22 KOG0532 Leucine-rich repeat (L 98.8 4.3E-10 9.4E-15 115.7 -2.2 89 416-507 107-195 (722)
23 KOG4237 Extracellular matrix p 98.7 4.3E-10 9.4E-15 110.8 -4.2 76 412-487 72-150 (498)
24 cd00116 LRR_RI Leucine-rich re 98.6 3.6E-09 7.9E-14 109.2 -1.3 242 406-660 19-291 (319)
25 cd00116 LRR_RI Leucine-rich re 98.6 5.5E-09 1.2E-13 107.9 -1.5 197 422-629 73-290 (319)
26 KOG0532 Leucine-rich repeat (L 98.6 7.9E-09 1.7E-13 106.6 -1.5 183 416-649 84-270 (722)
27 COG4886 Leucine-rich repeat (L 98.5 6.1E-08 1.3E-12 103.2 4.1 96 410-507 119-215 (394)
28 PF14580 LRR_9: Leucine-rich r 98.4 4E-08 8.6E-13 89.9 -0.7 57 429-487 41-98 (175)
29 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.8E-11 65.4 4.3 58 430-488 1-60 (61)
30 COG4886 Leucine-rich repeat (L 98.2 7.6E-07 1.6E-11 94.8 3.8 192 417-635 103-295 (394)
31 PF14580 LRR_9: Leucine-rich r 98.2 1.2E-06 2.5E-11 80.3 4.4 127 373-512 18-151 (175)
32 PRK15386 type III secretion pr 98.2 3.5E-06 7.5E-11 86.6 7.5 67 426-497 48-114 (426)
33 KOG4237 Extracellular matrix p 98.1 8.8E-08 1.9E-12 94.9 -5.2 124 371-507 64-194 (498)
34 PF12799 LRR_4: Leucine Rich r 98.0 5.4E-06 1.2E-10 56.9 3.9 40 430-470 1-40 (44)
35 PLN03150 hypothetical protein; 98.0 7.5E-06 1.6E-10 91.7 5.3 76 422-497 434-510 (623)
36 PLN03150 hypothetical protein; 97.9 1.7E-05 3.8E-10 88.8 5.8 92 431-524 419-511 (623)
37 KOG1259 Nischarin, modulator o 97.9 2.8E-06 6.1E-11 81.3 -0.5 77 428-507 282-358 (490)
38 PF13855 LRR_8: Leucine rich r 97.7 3.7E-05 8.1E-10 57.4 3.8 55 410-464 4-60 (61)
39 KOG3207 Beta-tubulin folding c 97.6 1E-05 2.2E-10 81.7 -0.5 39 590-628 297-337 (505)
40 KOG1909 Ran GTPase-activating 97.5 2.6E-05 5.5E-10 76.7 0.4 70 555-629 179-253 (382)
41 KOG3207 Beta-tubulin folding c 97.4 2E-05 4.3E-10 79.6 -1.2 65 424-489 115-184 (505)
42 KOG3665 ZYG-1-like serine/thre 97.4 4.9E-05 1.1E-09 85.0 1.7 105 430-540 122-230 (699)
43 KOG2120 SCF ubiquitin ligase, 97.4 1.7E-05 3.6E-10 76.2 -2.3 62 558-628 310-374 (419)
44 KOG0531 Protein phosphatase 1, 97.4 4.6E-05 9.9E-10 81.5 0.6 78 426-507 91-168 (414)
45 KOG1259 Nischarin, modulator o 97.4 3.3E-05 7.1E-10 74.2 -0.5 98 406-507 283-380 (490)
46 PF12799 LRR_4: Leucine Rich r 97.3 0.00025 5.5E-09 48.6 3.1 35 594-628 1-35 (44)
47 KOG0531 Protein phosphatase 1, 97.1 6.8E-05 1.5E-09 80.1 -1.6 98 406-507 91-192 (414)
48 KOG1909 Ran GTPase-activating 97.1 3.6E-05 7.7E-10 75.7 -4.0 193 425-629 87-310 (382)
49 PRK15386 type III secretion pr 97.1 0.0019 4.2E-08 66.8 8.3 160 449-649 48-210 (426)
50 KOG1859 Leucine-rich repeat pr 97.0 5.7E-05 1.2E-09 81.0 -2.9 87 417-508 174-261 (1096)
51 KOG2120 SCF ubiquitin ligase, 96.9 1.8E-05 3.9E-10 75.9 -7.4 59 591-650 310-374 (419)
52 KOG4579 Leucine-rich repeat (L 96.6 0.00015 3.3E-09 61.7 -3.1 78 427-506 50-128 (177)
53 KOG4579 Leucine-rich repeat (L 96.5 0.00055 1.2E-08 58.4 -0.5 87 375-471 54-140 (177)
54 KOG2982 Uncharacterized conser 96.5 0.0016 3.4E-08 63.0 2.3 182 429-634 70-266 (418)
55 PF00560 LRR_1: Leucine Rich R 96.4 0.0016 3.5E-08 37.1 1.1 22 431-452 1-22 (22)
56 PF12061 DUF3542: Protein of u 96.2 0.0096 2.1E-07 57.9 5.7 84 5-109 317-401 (402)
57 COG5238 RNA1 Ran GTPase-activa 96.1 0.0038 8.3E-08 59.6 2.6 69 556-628 180-253 (388)
58 KOG2739 Leucine-rich acidic nu 95.5 0.0078 1.7E-07 57.5 2.1 102 408-513 44-155 (260)
59 KOG3665 ZYG-1-like serine/thre 95.4 0.0069 1.5E-07 68.1 2.0 82 406-489 147-232 (699)
60 KOG1644 U2-associated snRNP A' 95.0 0.021 4.6E-07 52.4 3.4 75 430-507 42-119 (233)
61 KOG2739 Leucine-rich acidic nu 94.7 0.021 4.5E-07 54.7 2.5 81 429-512 42-127 (260)
62 KOG1859 Leucine-rich repeat pr 94.7 0.0023 4.9E-08 69.2 -4.4 99 430-538 164-262 (1096)
63 PF01637 Arch_ATPase: Archaeal 94.6 0.18 4E-06 48.8 9.2 49 214-265 184-232 (234)
64 PF00560 LRR_1: Leucine Rich R 94.5 0.015 3.3E-07 33.0 0.7 20 454-474 1-20 (22)
65 KOG1644 U2-associated snRNP A' 94.0 0.068 1.5E-06 49.2 4.0 91 416-509 51-148 (233)
66 PF13504 LRR_7: Leucine rich r 93.9 0.04 8.7E-07 29.0 1.5 16 431-446 2-17 (17)
67 KOG2982 Uncharacterized conser 93.7 0.024 5.1E-07 55.1 0.7 203 430-653 45-263 (418)
68 KOG2123 Uncharacterized conser 93.7 0.0063 1.4E-07 58.4 -3.2 79 427-507 38-123 (388)
69 TIGR00635 ruvB Holliday juncti 92.4 0.48 1E-05 48.3 8.1 72 194-269 130-203 (305)
70 PF13504 LRR_7: Leucine rich r 92.4 0.088 1.9E-06 27.7 1.4 17 453-470 1-17 (17)
71 PRK00080 ruvB Holliday junctio 91.2 0.91 2E-05 46.8 8.6 71 195-269 152-224 (328)
72 smart00369 LRR_TYP Leucine-ric 90.1 0.24 5.2E-06 29.3 1.9 21 429-449 1-21 (26)
73 smart00370 LRR Leucine-rich re 90.1 0.24 5.2E-06 29.3 1.9 21 429-449 1-21 (26)
74 KOG2123 Uncharacterized conser 89.8 0.023 4.9E-07 54.7 -4.2 76 429-508 18-95 (388)
75 PRK04841 transcriptional regul 89.8 2.6 5.7E-05 50.2 12.2 151 192-352 150-332 (903)
76 KOG0473 Leucine-rich repeat pr 86.4 0.038 8.3E-07 51.8 -4.8 76 412-488 47-122 (326)
77 COG5238 RNA1 Ran GTPase-activa 86.2 0.32 6.9E-06 46.9 1.0 41 424-464 86-131 (388)
78 KOG0473 Leucine-rich repeat pr 84.6 0.044 9.6E-07 51.4 -5.3 48 417-464 75-122 (326)
79 smart00370 LRR Leucine-rich re 84.0 0.87 1.9E-05 26.8 1.9 21 452-473 1-21 (26)
80 smart00369 LRR_TYP Leucine-ric 84.0 0.87 1.9E-05 26.8 1.9 21 452-473 1-21 (26)
81 PRK00411 cdc6 cell division co 83.8 8.1 0.00018 40.9 10.6 39 141-181 28-66 (394)
82 KOG1947 Leucine rich repeat pr 82.9 0.25 5.4E-06 53.9 -1.4 34 429-462 187-223 (482)
83 KOG4341 F-box protein containi 81.8 0.14 3E-06 52.4 -3.5 86 559-652 292-385 (483)
84 PRK06893 DNA replication initi 81.0 5.6 0.00012 38.5 7.4 58 204-265 144-201 (229)
85 PF13306 LRR_5: Leucine rich r 77.7 6.6 0.00014 33.7 6.2 58 426-486 31-90 (129)
86 smart00364 LRR_BAC Leucine-ric 71.4 2.4 5.3E-05 25.0 1.1 17 431-447 3-19 (26)
87 PRK13342 recombination factor 70.6 20 0.00042 38.3 8.7 54 213-267 143-196 (413)
88 PRK05564 DNA polymerase III su 68.8 46 0.001 33.9 10.8 72 187-266 116-189 (313)
89 PF13191 AAA_16: AAA ATPase do 65.6 4.1 8.9E-05 37.6 2.1 35 144-181 1-35 (185)
90 KOG3864 Uncharacterized conser 65.1 2.2 4.7E-05 39.7 0.1 66 554-627 118-186 (221)
91 PF05729 NACHT: NACHT domain 65.0 11 0.00023 34.0 4.7 42 192-233 118-162 (166)
92 TIGR03015 pepcterm_ATPase puta 63.1 20 0.00044 35.5 6.7 58 214-271 185-242 (269)
93 KOG4341 F-box protein containi 62.2 6.4 0.00014 40.8 2.8 38 451-488 292-331 (483)
94 PF13306 LRR_5: Leucine rich r 61.0 18 0.00038 31.0 5.2 78 425-507 7-87 (129)
95 smart00365 LRR_SD22 Leucine-ri 59.3 7.2 0.00016 23.1 1.6 15 430-444 2-16 (26)
96 KOG1947 Leucine rich repeat pr 57.9 2.5 5.4E-05 46.0 -1.0 139 451-605 186-332 (482)
97 KOG3864 Uncharacterized conser 56.9 1.7 3.7E-05 40.3 -2.0 60 430-489 101-163 (221)
98 PF13516 LRR_6: Leucine Rich r 55.8 6.2 0.00014 22.6 0.9 14 430-443 2-15 (24)
99 PF05659 RPW8: Arabidopsis bro 54.9 36 0.00078 30.3 6.0 56 6-63 31-86 (147)
100 COG2255 RuvB Holliday junction 52.5 1.3E+02 0.0028 30.0 9.6 64 197-264 155-220 (332)
101 smart00367 LRR_CC Leucine-rich 48.0 15 0.00032 21.5 1.7 14 453-466 2-15 (26)
102 PTZ00202 tuzin; Provisional 47.8 30 0.00065 36.8 4.9 41 138-181 257-297 (550)
103 COG3899 Predicted ATPase [Gene 46.0 85 0.0018 37.0 8.9 57 213-274 211-267 (849)
104 TIGR01242 26Sp45 26S proteasom 45.2 55 0.0012 34.2 6.7 63 194-261 261-328 (364)
105 PRK09087 hypothetical protein; 43.7 1.2E+02 0.0025 29.3 8.1 68 194-265 117-193 (226)
106 smart00368 LRR_RI Leucine rich 42.9 18 0.00038 21.8 1.5 14 430-443 2-15 (28)
107 COG2256 MGS1 ATPase related to 41.8 78 0.0017 33.1 6.7 48 186-233 123-175 (436)
108 PRK07471 DNA polymerase III su 40.2 2.2E+02 0.0047 29.8 10.1 106 152-267 126-238 (365)
109 PRK05707 DNA polymerase III su 36.8 2.2E+02 0.0047 29.3 9.3 106 152-267 91-203 (328)
110 TIGR02928 orc1/cdc6 family rep 36.7 27 0.00059 36.4 2.8 39 141-181 13-51 (365)
111 PF05496 RuvB_N: Holliday junc 36.1 70 0.0015 30.7 5.1 66 195-264 151-218 (233)
112 COG2909 MalT ATP-dependent tra 34.2 7E+02 0.015 29.2 13.0 157 188-354 154-340 (894)
113 COG3903 Predicted ATPase [Gene 33.5 56 0.0012 34.2 4.2 85 187-274 110-196 (414)
114 PF14162 YozD: YozD-like prote 33.2 46 0.001 23.1 2.4 23 306-328 9-31 (57)
115 PF09869 DUF2096: Uncharacteri 33.2 1E+02 0.0022 27.7 5.2 45 9-56 49-93 (169)
116 TIGR02397 dnaX_nterm DNA polym 30.9 5E+02 0.011 26.7 11.2 71 193-267 146-218 (355)
117 PRK00440 rfc replication facto 29.7 3.6E+02 0.0078 27.1 9.8 47 214-264 154-200 (319)
118 TIGR03420 DnaA_homol_Hda DnaA 28.6 2.4E+02 0.0052 26.8 7.8 69 195-267 124-201 (226)
119 PRK08727 hypothetical protein; 27.7 1.8E+02 0.0039 28.1 6.7 67 194-264 126-201 (233)
120 PRK04195 replication factor C 27.4 2.1E+02 0.0046 31.2 7.9 37 143-181 14-50 (482)
121 PRK07940 DNA polymerase III su 24.0 5.2E+02 0.011 27.3 9.7 105 152-267 102-213 (394)
122 PRK07399 DNA polymerase III su 24.0 5.6E+02 0.012 26.1 9.7 106 151-266 108-220 (314)
123 PRK13341 recombination factor 23.9 3.8E+02 0.0081 31.0 9.2 46 213-261 160-211 (725)
124 PRK08769 DNA polymerase III su 23.8 2.9E+02 0.0063 28.3 7.5 104 152-267 98-208 (319)
125 PRK07003 DNA polymerase III su 23.7 4.3E+02 0.0092 30.7 9.2 72 192-267 147-221 (830)
126 smart00763 AAA_PrkA PrkA AAA d 23.1 63 0.0014 33.5 2.6 40 142-181 50-89 (361)
127 PTZ00112 origin recognition co 22.0 4.5E+02 0.0098 31.2 9.0 39 142-181 754-792 (1164)
128 PRK06090 DNA polymerase III su 21.9 4.9E+02 0.011 26.6 8.7 101 153-267 94-201 (319)
129 PRK10787 DNA-binding ATP-depen 21.4 3.6E+02 0.0078 31.5 8.5 40 142-181 321-360 (784)
130 PF12875 DUF3826: Protein of u 21.2 1.1E+02 0.0023 28.1 3.2 48 8-56 96-150 (188)
131 PRK06620 hypothetical protein; 20.6 4E+02 0.0087 25.3 7.4 65 193-261 112-183 (214)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-59 Score=520.20 Aligned_cols=602 Identities=24% Similarity=0.310 Sum_probs=410.1
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHhccccccccchhhhhhhhhccccccccCccccccc
Q 044550 3 LVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAPHKKKVRSFFCAVS 82 (662)
Q Consensus 3 l~~~v~~~~~~l~~~L~~i~a~L~~a~~~~~~~~~~~~~Wl~~vr~~ayd~eD~~~lD~~~~~~~~~~~~~~~~~~~~~~ 82 (662)
.+.|+++.+..|+++|..++.+++||++++.. ...+..|...+++++|++||. ++.|.......+..+.-.......
T Consensus 22 ~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~--~~~~~v~~~~~~~~~~l~~~~~~~ 98 (889)
T KOG4658|consen 22 CLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDI--IWLFLVEEIERKANDLLSTRSVER 98 (889)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHhhhhHHHH
Confidence 46788999999999999999999999999887 889999999999999999999 999998876653221100000122
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHhcccCCceecc---CCCCCCCCCCCccccccCCceecccchHHHHHHHH
Q 044550 83 NCFGSFKQLSLRHHIAVKIREISEKLDEIAARKDRFKFVENV---SNSVKKPERERTISLIDEGEVCGRVDEKNELLSKL 159 (662)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L 159 (662)
+.+ | -..++++.+..+..+.+++..+......|...... +........+++.+...+.. ||.+..++++++.|
T Consensus 99 ~~~-c--~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L 174 (889)
T KOG4658|consen 99 QRL-C--LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRL 174 (889)
T ss_pred HHH-h--hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHh
Confidence 222 1 12567788888888888888887777777644322 11122233455566665656 99999999999999
Q ss_pred hccCccCCCCeEEEEEecCCCc-----------------ccch-------------------------------------
Q 044550 160 LCESSEQQKGLHVISLVGLGGI-----------------EPFF------------------------------------- 185 (662)
Q Consensus 160 ~~~~~~~~~~~~vi~I~G~gGi-----------------~~F~------------------------------------- 185 (662)
+.++. .++||+||||+ ++||
T Consensus 175 ~~d~~------~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~ 248 (889)
T KOG4658|consen 175 MEDDV------GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEED 248 (889)
T ss_pred ccCCC------CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHH
Confidence 97653 89999999999 3344
Q ss_pred --------------------------------hhhhcCCCCceEEEEcccHHHHhh-hCCCCeeeCCCCChHHHHHHHHH
Q 044550 186 --------------------------------LRLKNGLHGSKIFVTTRNESVARM-MGSTNIISIKQLAEEECWSLFKQ 232 (662)
Q Consensus 186 --------------------------------~~l~~~~~gSrIivTTR~~~v~~~-~~~~~~~~l~~L~~~~s~~Lf~~ 232 (662)
.++|....||||++|||++.||.. |++...++++.|..+|||.||++
T Consensus 249 ~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~ 328 (889)
T KOG4658|consen 249 ELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQK 328 (889)
T ss_pred HHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHH
Confidence 778888899999999999999999 88889999999999999999999
Q ss_pred HhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCHHHHHHHHhhhhhhh-------hh------------
Q 044550 233 LAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKV-------LE------------ 293 (662)
Q Consensus 233 ~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~~~~~~-------~~------------ 293 (662)
+||.... ...+.++++|++|+++|+|+|||++++|+.|+.|++..+|+++.+...+.+ .+
T Consensus 329 ~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~ 407 (889)
T KOG4658|consen 329 KVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDN 407 (889)
T ss_pred hhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhh
Confidence 9997644 233459999999999999999999999999999999999999987543331 00
Q ss_pred ------------------------------hhcCcccCCC-CchHHHHHHHHHHHHHhcCcccccccCCCCCeeeEEcCh
Q 044550 294 ------------------------------IGQGYLNAKE-DEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHD 342 (662)
Q Consensus 294 ------------------------------iaeg~i~~~~-~~~~~~~~~~~~~~L~~rsli~~~~~~~~~~~~~~~mHd 342 (662)
|||||+.+.+ +.++++.|..|+.+|++++|++..... ++..+|+|||
T Consensus 408 L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHD 485 (889)
T KOG4658|consen 408 LPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHD 485 (889)
T ss_pred hhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeH
Confidence 9999999854 889999999999999999999987754 6778999999
Q ss_pred HHHHHHHHhhc-----cceEEEecC-CccccccccCCCceeEEEEecCCCCCcccccc--cccccc----------cchH
Q 044550 343 IVHDFAQFVSS-----KECLWLQIN-GTKESVINSFGDNVRHLGLNFQRGASFPMSIH--RFNRFS----------ILSE 404 (662)
Q Consensus 343 ll~dl~~~i~~-----~e~~~~~~~-~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~--~l~~l~----------~~~~ 404 (662)
+|||||.++|. +|+.+.... +....+....+..+|++++.++....++.... ++++|- ....
T Consensus 486 vvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ 565 (889)
T KOG4658|consen 486 VVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGE 565 (889)
T ss_pred HHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHH
Confidence 99999999999 666555543 22223334446789999999988764433222 233331 2233
Q ss_pred hhhcCccccccc---c-cccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccccccccc
Q 044550 405 LFSKLVFLRALR---N-WIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMR 480 (662)
Q Consensus 405 ~~~~l~~Lrvl~---~-~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~ 480 (662)
+|..++.||||+ | .+.++|.+|++|.|||||+++++.++.+|.++++|+.|.+||+..+..+..+|.....|.+||
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 456666666662 2 455666666666666666666666666666666666666666666655555555445566666
Q ss_pred EEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccc
Q 044550 481 SLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNK 560 (662)
Q Consensus 481 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~ 560 (662)
+|.+..... ..-...++.+.+|++|..+...... ...+..+..++.|+.+.+.-.. .. .......+.+..+
T Consensus 646 ~L~l~~s~~-~~~~~~l~el~~Le~L~~ls~~~~s----~~~~e~l~~~~~L~~~~~~l~~--~~--~~~~~~~~~~~~l 716 (889)
T KOG4658|consen 646 VLRLPRSAL-SNDKLLLKELENLEHLENLSITISS----VLLLEDLLGMTRLRSLLQSLSI--EG--CSKRTLISSLGSL 716 (889)
T ss_pred EEEeecccc-ccchhhHHhhhcccchhhheeecch----hHhHhhhhhhHHHHHHhHhhhh--cc--cccceeecccccc
Confidence 666644320 0001112222333333222221111 0011122222222211110000 00 1112234556778
Q ss_pred ccCCcEEEEecCCCCCCCCchhHHHHhhhCC---CCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCC-CCC
Q 044550 561 KNLLRLGLQFGGDIEGRRKNEKDKQLLEALQ---PPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEH-LPP 635 (662)
Q Consensus 561 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~---~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~-lp~ 635 (662)
.+|+.|.+..++...... ...+... .++++.++.+.++...+.|.|....++|+.|.+..|...+. +|.
T Consensus 717 ~~L~~L~i~~~~~~e~~~------~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 717 GNLEELSILDCGISEIVI------EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred cCcceEEEEcCCCchhhc------ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence 899999998776521110 0111111 24467777777777777788888888999999998886653 443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-43 Score=419.12 Aligned_cols=529 Identities=20% Similarity=0.230 Sum_probs=338.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCCceecc-------CCCCCCCCCCCccccccCCceecccchHHHHHHHHhccCccCCCCe
Q 044550 98 AVKIREISEKLDEIAARKDRFKFVENV-------SNSVKKPERERTISLIDEGEVCGRVDEKNELLSKLLCESSEQQKGL 170 (662)
Q Consensus 98 ~~~i~~i~~~l~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~ 170 (662)
..+++++++.+.+++...+ |.+.... .....+...-..++..+.+++|||++.++++..+|..+.. ++
T Consensus 133 ~~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~----~~ 207 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESE----EV 207 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccC----ce
Confidence 3578889999988887643 2221100 0001111111122334456799999999999999865543 78
Q ss_pred EEEEEecCCCc--------------ccch---------------------------------------------------
Q 044550 171 HVISLVGLGGI--------------EPFF--------------------------------------------------- 185 (662)
Q Consensus 171 ~vi~I~G~gGi--------------~~F~--------------------------------------------------- 185 (662)
+||+||||||+ .+|+
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~ 287 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLG 287 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHH
Confidence 99999999999 1221
Q ss_pred ------------------------hhh----hcCCCCceEEEEcccHHHHhhhCCCCeeeCCCCChHHHHHHHHHHhhcC
Q 044550 186 ------------------------LRL----KNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFG 237 (662)
Q Consensus 186 ------------------------~~l----~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 237 (662)
.++ ...++|||||||||+++++..++++++|+++.|++++||+||+++||+.
T Consensus 288 ~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~ 367 (1153)
T PLN03210 288 AMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKK 367 (1153)
T ss_pred HHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCC
Confidence 111 1236799999999999999988888999999999999999999999976
Q ss_pred CCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCHHHHHHHHhhhhh-------hhhhhhcCcccCC--------
Q 044550 238 RSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMW-------KVLEIGQGYLNAK-------- 302 (662)
Q Consensus 238 ~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~~~~-------~~~~iaeg~i~~~-------- 302 (662)
.. .++++++++++|+++|+|+|||++++|+.|+++ +..+|+.++++..+ ...++++.-+...
T Consensus 368 ~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ 444 (1153)
T PLN03210 368 NS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRH 444 (1153)
T ss_pred CC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhhe
Confidence 43 356789999999999999999999999999988 68999999876443 2223444333221
Q ss_pred ---------CCchHHHHH------HHHHHHHHhcCcccccccCCCCCeeeEEcChHHHHHHHHhhccce-------EEEe
Q 044550 303 ---------EDEEMEMIG------EECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKEC-------LWLQ 360 (662)
Q Consensus 303 ---------~~~~~~~~~------~~~~~~L~~rsli~~~~~~~~~~~~~~~mHdll~dl~~~i~~~e~-------~~~~ 360 (662)
........+ +..++.|+++||++... ..++|||++|+||+.+++++. +...
T Consensus 445 ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~ 517 (1153)
T PLN03210 445 IACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVD 517 (1153)
T ss_pred ehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeC
Confidence 111111112 12367899999998753 258999999999999997763 2111
Q ss_pred cCCc-cccccccCCCceeEEEEecCCCCCcc---ccc---ccccccc--------------cchHhhhcC-cccccc---
Q 044550 361 INGT-KESVINSFGDNVRHLGLNFQRGASFP---MSI---HRFNRFS--------------ILSELFSKL-VFLRAL--- 415 (662)
Q Consensus 361 ~~~~-~~~~~~~~~~~~r~l~l~~~~~~~~~---~~~---~~l~~l~--------------~~~~~~~~l-~~Lrvl--- 415 (662)
.... ...........+++++++......+. ..+ .+++.+. .+|..|..+ ..||.+
T Consensus 518 ~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~ 597 (1153)
T PLN03210 518 AKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD 597 (1153)
T ss_pred HHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec
Confidence 1110 01111233566788877655543221 112 2222211 112222222 235554
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI 495 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~ 495 (662)
.+.++.+|..+ .+.+|++|++++|.+..+|..+..+++|+.|++++|..++.+|. ++.+++|+.|++++|..+..+|.
T Consensus 598 ~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 598 KYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred CCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch
Confidence 45677777776 46788888888888888888888888888888888777777775 77788888888888877788888
Q ss_pred cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCCh-hhhhhccc-----------cccccC
Q 044550 496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHV-DEVERLQL-----------YNKKNL 563 (662)
Q Consensus 496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~-~~~~~~~l-----------~~~~~L 563 (662)
.++.+++|+.|++..+.+ ....+..+ ++++|+.|.++++..+..+... ..+....+ ..+.+|
T Consensus 676 si~~L~~L~~L~L~~c~~--L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L 749 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCEN--LEILPTGI----NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENL 749 (1153)
T ss_pred hhhccCCCCEEeCCCCCC--cCccCCcC----CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccccccccc
Confidence 888888888887443222 11122222 4555666666665322221110 00000000 012334
Q ss_pred CcEEEEecCCC--CCCCCchhHHHHhhhCCCCCCCcEEEEeecC-CCCCCcccccccCccEEEecCCCCCCCCCCCCCcc
Q 044550 564 LRLGLQFGGDI--EGRRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP 640 (662)
Q Consensus 564 ~~L~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp 640 (662)
+.|.+..+... ....... .......+++|+.|++++|. ...+|.+++++++|+.|+|++|..++.+|....++
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l----~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~ 825 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPL----TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE 825 (1153)
T ss_pred ccccccccchhhcccccccc----chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCcc
Confidence 44444321100 0000000 00011235789999999985 45689999999999999999999888898877888
Q ss_pred -cceeecccccCcc
Q 044550 641 -LEKLQLKNLKSVK 653 (662)
Q Consensus 641 -L~~l~l~~l~~L~ 653 (662)
|+.|.+.+|..+.
T Consensus 826 sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 826 SLESLDLSGCSRLR 839 (1153)
T ss_pred ccCEEECCCCCccc
Confidence 9999998876654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.74 E-value=1.1e-18 Score=177.41 Aligned_cols=138 Identities=43% Similarity=0.599 Sum_probs=107.4
Q ss_pred ccchHHHHHHHHhccCccCCCCeEEEEEecCCCc----------------ccch--------------------------
Q 044550 148 RVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI----------------EPFF-------------------------- 185 (662)
Q Consensus 148 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi----------------~~F~-------------------------- 185 (662)
||.++++|.++|..... +.++|+|+||||+ ++|+
T Consensus 1 re~~~~~l~~~L~~~~~----~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSN----EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTT----SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCC----CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 68899999999997543 7899999999999 2333
Q ss_pred --------------------------------------------hhhhcCCCCceEEEEcccHHHHhhhCC-CCeeeCCC
Q 044550 186 --------------------------------------------LRLKNGLHGSKIFVTTRNESVARMMGS-TNIISIKQ 220 (662)
Q Consensus 186 --------------------------------------------~~l~~~~~gSrIivTTR~~~v~~~~~~-~~~~~l~~ 220 (662)
..++....||+||||||+..++..++. ...|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 334555679999999999999988765 67999999
Q ss_pred CChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCHHHHHHHHhhhhhh
Q 044550 221 LAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWK 290 (662)
Q Consensus 221 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~~~~~ 290 (662)
|++++|++||++.++... ....+.+.+++++|+++|+|+|||++++|++|+.+.+..+|+.+++...+.
T Consensus 157 L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~ 225 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENS 225 (287)
T ss_dssp --HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHC
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999998655 223455678899999999999999999999997776788999988764443
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=5e-18 Score=174.02 Aligned_cols=245 Identities=22% Similarity=0.270 Sum_probs=154.4
Q ss_pred CCceeEEEEecCCCCCcccccccccccc-------c---chHhhhcCcccccc---ccccc--ccCcccCCCCccceeee
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFS-------I---LSELFSKLVFLRAL---RNWIR--EIPENVGKLIHLKYLNL 437 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~-------~---~~~~~~~l~~Lrvl---~~~~~--~lp~~i~~l~~Lr~L~L 437 (662)
...+++|.++...+..+|..+.++..|. . +..-++.++.||.+ .|.++ -+|+.|..|..|..|+|
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 3457788888888888887776666542 1 11224555566655 45443 47888999999999999
Q ss_pred cCCCCcccchhhhcCCCccEEeccCCCCCccCCccc-cccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccC
Q 044550 438 SELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVD 516 (662)
Q Consensus 438 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~ 516 (662)
|+|++.+.|..+.+-+++-.|+|++|+ +..+|..+ .+|+.|-+|++++|.. ..+|+.+..|..|++|.+ .+|..
T Consensus 111 ShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~L--s~NPL- 185 (1255)
T KOG0444|consen 111 SHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKL--SNNPL- 185 (1255)
T ss_pred chhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchh-hhcCHHHHHHhhhhhhhc--CCChh-
Confidence 999999999999999999999999887 88888754 5888999999998864 889999999999999974 33322
Q ss_pred CCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCC--
Q 044550 517 GGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPL-- 594 (662)
Q Consensus 517 ~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~-- 594 (662)
...-+..|+.++.|..|.+++... .-.-...++..+.+|..++++.++. ..+++.+...+
T Consensus 186 --~hfQLrQLPsmtsL~vLhms~TqR------Tl~N~Ptsld~l~NL~dvDlS~N~L----------p~vPecly~l~~L 247 (1255)
T KOG0444|consen 186 --NHFQLRQLPSMTSLSVLHMSNTQR------TLDNIPTSLDDLHNLRDVDLSENNL----------PIVPECLYKLRNL 247 (1255)
T ss_pred --hHHHHhcCccchhhhhhhcccccc------hhhcCCCchhhhhhhhhccccccCC----------CcchHHHhhhhhh
Confidence 133455666666666666655411 0111122334444555555544432 12233333334
Q ss_pred ---------------------CCcEEEEeecCCCCCCcccccccCccEEEecCCCCC-CCCCC-CCCcc
Q 044550 595 ---------------------NVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNC-EHLPP-LGKLP 640 (662)
Q Consensus 595 ---------------------~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~-~~lp~-l~~Lp 640 (662)
+|++|+++.|..+.+|..+..|+.|++|.+.+|+.. +.+|+ +|+|-
T Consensus 248 rrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 248 RRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred heeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 455555555555555555555666666665555532 34443 34444
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.65 E-value=2.5e-16 Score=187.16 Aligned_cols=87 Identities=28% Similarity=0.442 Sum_probs=48.2
Q ss_pred ccCcccCCCCccceeeecCCCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCC
Q 044550 421 EIPENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISR 499 (662)
Q Consensus 421 ~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 499 (662)
.+|..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++.
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 34555555555555555555543 44555555555555555555544445555555555555555555544455555555
Q ss_pred CCCCCccC
Q 044550 500 LTSLRTLE 507 (662)
Q Consensus 500 L~~L~~L~ 507 (662)
+++|++|+
T Consensus 235 l~~L~~L~ 242 (968)
T PLN00113 235 LTSLNHLD 242 (968)
T ss_pred CCCCCEEE
Confidence 55555554
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.64 E-value=4e-16 Score=185.41 Aligned_cols=262 Identities=20% Similarity=0.212 Sum_probs=145.1
Q ss_pred CCceeEEEEecCCCC-Cccc-ccccccccc--------cchHhhhcCcccccc---cccc-cccCcccCCCCccceeeec
Q 044550 373 GDNVRHLGLNFQRGA-SFPM-SIHRFNRFS--------ILSELFSKLVFLRAL---RNWI-REIPENVGKLIHLKYLNLS 438 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~-~~~~-~~~~l~~l~--------~~~~~~~~l~~Lrvl---~~~~-~~lp~~i~~l~~Lr~L~L~ 438 (662)
...+|+|.+..+... .+|. .+.+++.|. .++..+.++++|++| +|.+ ..+|..++++++|++|+|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 345666666555443 2221 223333321 334446667777776 3444 4567778888888888888
Q ss_pred CCCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCC
Q 044550 439 ELRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDG 517 (662)
Q Consensus 439 ~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~ 517 (662)
+|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++.+++|++|++. .+...+
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~--~n~l~~ 274 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY--QNKLSG 274 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc--CCeeec
Confidence 88765 567788888888888888877556778788888888888888887666777778888888887643 222222
Q ss_pred CCccCccccccCcccCccccccCCCCCCCC----C-------------hhhhhhccccccccCCcEEEEecCCCCCCCCc
Q 044550 518 GGTCRLESLKNLQLLRKCSIEGLKGLSNVS----H-------------VDEVERLQLYNKKNLLRLGLQFGGDIEGRRKN 580 (662)
Q Consensus 518 ~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~----~-------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 580 (662)
..+..+.. +++|+.|.+++..-..... . ........+..+++|+.|+++.+..
T Consensus 275 ~~p~~l~~---l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l------- 344 (968)
T PLN00113 275 PIPPSIFS---LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF------- 344 (968)
T ss_pred cCchhHhh---ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC-------
Confidence 22333333 3344444443321000000 0 0000111233344455555544321
Q ss_pred hhHHHHhhhCCCCCCCcEEEEeecCCC-CCCcccccccCccEEEecCCCCCCCCCC-CCCcc-cceeeccc
Q 044550 581 EKDKQLLEALQPPLNVEELEIESYRGN-IFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLKN 648 (662)
Q Consensus 581 ~~~~~~l~~l~~~~~L~~L~l~~~~~~-~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l~l~~ 648 (662)
.......+..+++|+.|++++|... .+|.++..+++|+.|++++|.....+|. ++.+| |+.|.+.+
T Consensus 345 --~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 345 --SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred --cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence 0111223344556666666666533 3466666666666666666665444443 55666 66665543
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=4.1e-15 Score=177.20 Aligned_cols=234 Identities=21% Similarity=0.283 Sum_probs=134.2
Q ss_pred cccccccCcccCCCCccceeeecCCC-CcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELR-IERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP 494 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p 494 (662)
++.+..+|.++..+++|++|+|+++. +..+|. ++.+++|++|++.+|..+..+|..++++++|++|++++|..+..+|
T Consensus 620 ~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred CccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 45666677777777777777777654 555553 6667777777777776677777777777777777777776666666
Q ss_pred CcCCCCCCCCccCceeecCccCCCCcc-------------Cccccc---cCcccCccccccCCC---------C------
Q 044550 495 IGISRLTSLRTLEKFVVGGGVDGGGTC-------------RLESLK---NLQLLRKCSIEGLKG---------L------ 543 (662)
Q Consensus 495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~-------------~l~~L~---~L~~L~~L~i~~~~~---------~------ 543 (662)
..+ ++++|+.|++..+.. ....+. .+..++ .+.+|..|.+..+.. +
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~--L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSR--LKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCC--ccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhh
Confidence 655 566666665332211 000000 000100 122222222221100 0
Q ss_pred --CCCC-----Ch--hhhhhccccccccCCcEEEEecCCCCC---CCC--c-----hhHHHHhhhC-CCCCCCcEEEEee
Q 044550 544 --SNVS-----HV--DEVERLQLYNKKNLLRLGLQFGGDIEG---RRK--N-----EKDKQLLEAL-QPPLNVEELEIES 603 (662)
Q Consensus 544 --~~~~-----~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~--~-----~~~~~~l~~l-~~~~~L~~L~l~~ 603 (662)
.++. .. .......+.++++|+.|+++.|..+.. ... . ......+..+ ..+.+|+.|++++
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCC
Confidence 0000 00 000122345566777777765542111 000 0 0000001111 1236799999999
Q ss_pred cCCCCCCcccccccCccEEEecCCCCCCCCCC-CCCcc-cceeecccccCcc
Q 044550 604 YRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLKNLKSVK 653 (662)
Q Consensus 604 ~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l~l~~l~~L~ 653 (662)
+....+|.|+..+++|+.|+|++|+.+..+|. ++.++ |+.+.+.+|..|.
T Consensus 856 n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 856 TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 99889999999999999999999998887765 67888 9999999998886
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=6.2e-17 Score=166.13 Aligned_cols=248 Identities=24% Similarity=0.234 Sum_probs=162.2
Q ss_pred CCceeEEEEecCCCCCcc---ccccccccc---------ccchHhhhcCcccccc---cccccccCcccCCCCccceeee
Q 044550 373 GDNVRHLGLNFQRGASFP---MSIHRFNRF---------SILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNL 437 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~---~~~~~l~~l---------~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L 437 (662)
..++.||++..+.+..+. .++.++|++ +.+|.-+.++..|.++ +|.+++.|..+..-+++-.|+|
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEc
Confidence 346778888777665332 334444443 2344446777777777 5899999999999999999999
Q ss_pred cCCCCcccchh-hhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccC
Q 044550 438 SELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVD 516 (662)
Q Consensus 438 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~ 516 (662)
|+|+|..+|.+ +-+|..|-+|||++|+ +..+|+.+..|.+|+.|.+++|....---..+..|++|++|.+.......
T Consensus 134 S~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl- 211 (1255)
T KOG0444|consen 134 SYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL- 211 (1255)
T ss_pred ccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-
Confidence 99999999986 4589999999999998 99999999999999999999997532211234457788888754443332
Q ss_pred CCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCC-------------CCCchhH
Q 044550 517 GGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEG-------------RRKNEKD 583 (662)
Q Consensus 517 ~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------------~~~~~~~ 583 (662)
...+.++..|.+|..+. |+.+++ +.++ ..+.++.+|+.|+++.+..... ......-
T Consensus 212 ~N~Ptsld~l~NL~dvD-lS~N~L---p~vP-------ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVD-LSENNL---PIVP-------ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred hcCCCchhhhhhhhhcc-ccccCC---Ccch-------HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence 12233444444443332 333343 2221 1233444555555544321100 0000011
Q ss_pred HHHhhhCCCCCCCcEEEEeecC--CCCCCcccccccCccEEEecCCCCCCCCC
Q 044550 584 KQLLEALQPPLNVEELEIESYR--GNIFPKWLTSLTNLRELKLSLCVNCEHLP 634 (662)
Q Consensus 584 ~~~l~~l~~~~~L~~L~l~~~~--~~~lP~~i~~l~~L~~L~L~~~~~~~~lp 634 (662)
...+..++.++.|++|.+.+|. +..+|+.|+.|.+|+++...+|+ ++-+|
T Consensus 281 t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVP 332 (1255)
T KOG0444|consen 281 TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVP 332 (1255)
T ss_pred ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCc
Confidence 2234456778899999999886 56789999999999999999886 33344
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.43 E-value=8.9e-15 Score=143.35 Aligned_cols=217 Identities=22% Similarity=0.270 Sum_probs=120.6
Q ss_pred eeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCc
Q 044550 376 VRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNL 455 (662)
Q Consensus 376 ~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 455 (662)
+..+.++.+....+|..+.+ +.+++.|.|.++.+.++|+.++.+..|+.|+.+.|.+.++|++|+.+..|
T Consensus 70 l~vl~~~~n~l~~lp~aig~----------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGE----------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDL 139 (565)
T ss_pred eeEEEeccchhhhCCHHHHH----------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhh
Confidence 34455566666666555433 34445555556666666777777777777777777666777777777777
Q ss_pred cEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCcc
Q 044550 456 QKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKC 535 (662)
Q Consensus 456 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L 535 (662)
+.|+..+|. +..+|.+++.+.+|..|++.+|.. +.+|+..-.|+.|++|+. +.+ ..+..|..++.+..|.-|. |
T Consensus 140 ~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~--~~N-~L~tlP~~lg~l~~L~~Ly-L 213 (565)
T KOG0472|consen 140 EDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDC--NSN-LLETLPPELGGLESLELLY-L 213 (565)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhccc--chh-hhhcCChhhcchhhhHHHH-h
Confidence 777666665 666666666666666666666654 455544444666666652 222 2222333333333333221 1
Q ss_pred ccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCccccc
Q 044550 536 SIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTS 615 (662)
Q Consensus 536 ~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~ 615 (662)
.-..+..++. +.+|..|..|+++-+. ...-..+..+..++|..|++..|....+|..+.-
T Consensus 214 ~~Nki~~lPe-----------f~gcs~L~Elh~g~N~---------i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl 273 (565)
T KOG0472|consen 214 RRNKIRFLPE-----------FPGCSLLKELHVGENQ---------IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL 273 (565)
T ss_pred hhcccccCCC-----------CCccHHHHHHHhcccH---------HHhhHHHHhcccccceeeeccccccccCchHHHH
Confidence 1111111121 2334444444443221 1111223344567777777777777777777777
Q ss_pred ccCccEEEecCCC
Q 044550 616 LTNLRELKLSLCV 628 (662)
Q Consensus 616 l~~L~~L~L~~~~ 628 (662)
+.+|.+|++++|.
T Consensus 274 LrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 274 LRSLERLDLSNND 286 (565)
T ss_pred hhhhhhhcccCCc
Confidence 7777777777776
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.38 E-value=1.4e-13 Score=141.04 Aligned_cols=200 Identities=23% Similarity=0.317 Sum_probs=126.8
Q ss_pred hhcCcccccc---cccccccCc-ccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCcc-ccccccc
Q 044550 406 FSKLVFLRAL---RNWIREIPE-NVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNM 479 (662)
Q Consensus 406 ~~~l~~Lrvl---~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L 479 (662)
+..+..||++ .|.+..+|. ++..=.++++|+|++|.|+.+- ..+.+|.+|.+|.|+.|+ +..+|.. +.+|++|
T Consensus 145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKL 223 (873)
T ss_pred HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchh
Confidence 3444445555 466666653 3444567888888888888663 367778888888888877 7777764 4458888
Q ss_pred cEEecCCCcccccc-CCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccc
Q 044550 480 RSLLNDGTYLLKYM-PIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLY 558 (662)
Q Consensus 480 ~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~ 558 (662)
+.|++..|.+ ..+ -..|.+|++|+.|.+-. |.........+-.+.++..|. |..+ .+..+..-.+.
T Consensus 224 ~~LdLnrN~i-rive~ltFqgL~Sl~nlklqr--N~I~kL~DG~Fy~l~kme~l~-L~~N---------~l~~vn~g~lf 290 (873)
T KOG4194|consen 224 ESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQR--NDISKLDDGAFYGLEKMEHLN-LETN---------RLQAVNEGWLF 290 (873)
T ss_pred hhhhccccce-eeehhhhhcCchhhhhhhhhh--cCcccccCcceeeecccceee-cccc---------hhhhhhccccc
Confidence 8888888764 322 24467788888776432 222111122333344444333 2222 22334445677
Q ss_pred ccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCC
Q 044550 559 NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCV 628 (662)
Q Consensus 559 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~ 628 (662)
+++.|+.|+++++.. ..-..+++.-.++|+.|+|++|.++++|. .+..|+.|+.|.|++|.
T Consensus 291 gLt~L~~L~lS~NaI---------~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAI---------QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred ccchhhhhccchhhh---------heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 888999999988753 22234567778899999999999888865 34466777777777765
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.7e-14 Score=125.37 Aligned_cols=157 Identities=23% Similarity=0.251 Sum_probs=109.2
Q ss_pred ccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCC
Q 044550 425 NVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLR 504 (662)
Q Consensus 425 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 504 (662)
++..+.+...|.|++|.++.+|+.|..|.+|+.|++.+|+ ++++|.+++.|++|++|+++-|. +..+|.+||.++.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 3456777888899999999999999999999999999888 89999999999999999998875 478999999999999
Q ss_pred ccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHH
Q 044550 505 TLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDK 584 (662)
Q Consensus 505 ~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 584 (662)
.|++.+.+-+. ....+++-.++.|+. |+++.++. +
T Consensus 106 vldltynnl~e----~~lpgnff~m~tlra-------------------------------lyl~dndf----------e 140 (264)
T KOG0617|consen 106 VLDLTYNNLNE----NSLPGNFFYMTTLRA-------------------------------LYLGDNDF----------E 140 (264)
T ss_pred hhhcccccccc----ccCCcchhHHHHHHH-------------------------------HHhcCCCc----------c
Confidence 99854432221 111222223333333 22222211 1
Q ss_pred HHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550 585 QLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 585 ~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~ 628 (662)
..+.....+.+|+.|.+..|....+|..++.+..|+.|++.+|+
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 11223344566666666666666777777777777777777776
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.33 E-value=2.7e-14 Score=139.97 Aligned_cols=214 Identities=22% Similarity=0.298 Sum_probs=163.0
Q ss_pred EEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEE
Q 044550 379 LGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKL 458 (662)
Q Consensus 379 l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 458 (662)
+.+..+....+|..+.. ..++.+|...++.+.++|++|+.+..|..|+..+|++..+|++++++..|..|
T Consensus 96 l~vs~n~ls~lp~~i~s----------~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 96 LNVSHNKLSELPEQIGS----------LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKL 165 (565)
T ss_pred hhcccchHhhccHHHhh----------hhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHh
Confidence 33444455555544432 33444555557889999999999999999999999999999999999999999
Q ss_pred eccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccc
Q 044550 459 DIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIE 538 (662)
Q Consensus 459 ~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~ 538 (662)
++.+++ ++.+|+..-.++.|++|+...|- ++.+|+.+|.|.+|.-|++....-.+ -..|..+..|..|+ .+.
T Consensus 166 ~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~----lPef~gcs~L~Elh-~g~- 237 (565)
T KOG0472|consen 166 DLEGNK-LKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRF----LPEFPGCSLLKELH-VGE- 237 (565)
T ss_pred hccccc-hhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccccc----CCCCCccHHHHHHH-hcc-
Confidence 999998 88898888889999999998885 58999999999999998754333322 12555555555554 222
Q ss_pred cCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccC
Q 044550 539 GLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTN 618 (662)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~ 618 (662)
...+.+....++++.+|..|++..+.. .++++.++...+|++|++++|.++.+|..++++ +
T Consensus 238 --------N~i~~lpae~~~~L~~l~vLDLRdNkl----------ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-h 298 (565)
T KOG0472|consen 238 --------NQIEMLPAEHLKHLNSLLVLDLRDNKL----------KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-H 298 (565)
T ss_pred --------cHHHhhHHHHhcccccceeeecccccc----------ccCchHHHHhhhhhhhcccCCccccCCcccccc-e
Confidence 223334445566778888888876643 345566677889999999999999999999999 9
Q ss_pred ccEEEecCCCC
Q 044550 619 LRELKLSLCVN 629 (662)
Q Consensus 619 L~~L~L~~~~~ 629 (662)
|+.|-+.+|+.
T Consensus 299 L~~L~leGNPl 309 (565)
T KOG0472|consen 299 LKFLALEGNPL 309 (565)
T ss_pred eeehhhcCCch
Confidence 99999999973
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.27 E-value=2.6e-12 Score=131.82 Aligned_cols=257 Identities=19% Similarity=0.196 Sum_probs=146.9
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccc-hh
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIP-ET 448 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~ 448 (662)
+...+.|.+..+.+..+. ...|.++.+|..+ .|.++.+|......-||+.|+|.+|.|.++- ++
T Consensus 77 p~~t~~LdlsnNkl~~id------------~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~ 144 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHID------------FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEE 144 (873)
T ss_pred ccceeeeeccccccccCc------------HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHH
Confidence 444555555555554331 1225556666655 4677777776666777777777777777663 35
Q ss_pred hhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccc
Q 044550 449 LCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLK 527 (662)
Q Consensus 449 i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~ 527 (662)
+.-+..|++|||+.|. +.++|. ++..=.++++|++++|.+...--..|..+.+|-+|. ...|.........+..|.
T Consensus 145 L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk--LsrNrittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK--LSRNRITTLPQRSFKRLP 221 (873)
T ss_pred HHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeee--cccCcccccCHHHhhhcc
Confidence 6677777777777766 666654 333446677777777765333334466666666665 333333333344444455
Q ss_pred cCcccCc----cc------cccCCCCCCC----CChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCC
Q 044550 528 NLQLLRK----CS------IEGLKGLSNV----SHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPP 593 (662)
Q Consensus 528 ~L~~L~~----L~------i~~~~~~~~~----~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 593 (662)
+|+.|.. +. ..++..++++ .....+..-.+..+.+++.|+|..+.. ..-.-..+..+
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l---------~~vn~g~lfgL 292 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL---------QAVNEGWLFGL 292 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh---------hhhhccccccc
Confidence 5544431 11 1111111111 011223333455677888888876642 11112345567
Q ss_pred CCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCCCCCCcc-cceeecccccCccEeCCccc
Q 044550 594 LNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLKSVKRVGNEFL 660 (662)
Q Consensus 594 ~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l~~L~~~~n~~~ 660 (662)
..|+.|++++|.+.++ ++.....++|+.|+|++|. +..|+ -.+-.|+.++.|.+..|.+.
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-------i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-------ITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccc-------cccCChhHHHHHHHhhhhcccccchH
Confidence 8899999999987665 3333466899999999997 44555 44445566667777777653
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.23 E-value=3.6e-13 Score=117.15 Aligned_cols=146 Identities=23% Similarity=0.372 Sum_probs=110.7
Q ss_pred CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhh
Q 044550 374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLC 450 (662)
Q Consensus 374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~ 450 (662)
+.+.++.++.+.+..+|.. +..+++|.++ .|.++++|.+|++|+.||.|+++-|.+..+|..+|
T Consensus 33 s~ITrLtLSHNKl~~vppn-------------ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPN-------------IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhhhhhhcccCceeecCCc-------------HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 4455566655555544333 5666777777 57899999999999999999999999999999999
Q ss_pred cCCCccEEeccCCCCC-ccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccC
Q 044550 451 ELYNLQKLDIRGCQYL-RGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNL 529 (662)
Q Consensus 451 ~L~~L~~L~l~~~~~l-~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L 529 (662)
.++-|+.||+..|+.- ..+|..+..|+.|+-|+++.|.. ..+|..+|+|++||.|.+ ..+.. -....+++.|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~l--rdndl----l~lpkeig~l 172 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSL--RDNDL----LSLPKEIGDL 172 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEee--ccCch----hhCcHHHHHH
Confidence 9999999999987632 46899999999999999999865 889999999999999963 33322 2233455555
Q ss_pred cccCcccccc
Q 044550 530 QLLRKCSIEG 539 (662)
Q Consensus 530 ~~L~~L~i~~ 539 (662)
+.|+.|.|.+
T Consensus 173 t~lrelhiqg 182 (264)
T KOG0617|consen 173 TRLRELHIQG 182 (264)
T ss_pred HHHHHHhccc
Confidence 6666655554
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=6.8e-11 Score=132.35 Aligned_cols=207 Identities=20% Similarity=0.232 Sum_probs=129.6
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcC
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL 452 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 452 (662)
+..++.|.+..+.+..+|..+ +.+++.|.+.+|.++.+|..+. .+|+.|+|++|.+..+|..+.
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l------------~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~-- 261 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENL------------QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP-- 261 (754)
T ss_pred ccCCcEEEecCCCCCcCChhh------------ccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--
Confidence 456788888888777665432 3455555555677888887654 478999999999999888775
Q ss_pred CCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCccc
Q 044550 453 YNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLL 532 (662)
Q Consensus 453 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L 532 (662)
.+|++|++++|+ +..+|..+. .+|++|++++|.. ..+|..+. ++|+.|++. .+.... .+..+ . .+|
T Consensus 262 s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls--~N~Lt~-LP~~l--~---~sL 327 (754)
T PRK15370 262 SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQ--SNSLTA-LPETL--P---PGL 327 (754)
T ss_pred CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhc--CCcccc-CCccc--c---ccc
Confidence 579999999876 778887664 5899999998864 66776543 467777533 232211 11111 1 234
Q ss_pred CccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc
Q 044550 533 RKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW 612 (662)
Q Consensus 533 ~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~ 612 (662)
+.|.+.+.. +..++. .+ .++|+.|+++.+... .+...+ +++|+.|++++|....+|..
T Consensus 328 ~~L~Ls~N~----Lt~LP~----~l--~~sL~~L~Ls~N~L~----------~LP~~l--p~~L~~LdLs~N~Lt~LP~~ 385 (754)
T PRK15370 328 KTLEAGENA----LTSLPA----SL--PPELQVLDVSKNQIT----------VLPETL--PPTITTLDVSRNALTNLPEN 385 (754)
T ss_pred eeccccCCc----cccCCh----hh--cCcccEEECCCCCCC----------cCChhh--cCCcCEEECCCCcCCCCCHh
Confidence 444443321 111111 11 257888888766421 011111 35788888888888888876
Q ss_pred cccccCccEEEecCCCCCCCCC
Q 044550 613 LTSLTNLRELKLSLCVNCEHLP 634 (662)
Q Consensus 613 i~~l~~L~~L~L~~~~~~~~lp 634 (662)
+. .+|+.|++++|... .+|
T Consensus 386 l~--~sL~~LdLs~N~L~-~LP 404 (754)
T PRK15370 386 LP--AALQIMQASRNNLV-RLP 404 (754)
T ss_pred HH--HHHHHHhhccCCcc-cCc
Confidence 54 36888888888633 444
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.12 E-value=1.7e-10 Score=129.25 Aligned_cols=205 Identities=19% Similarity=0.256 Sum_probs=132.7
Q ss_pred ceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCC
Q 044550 375 NVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYN 454 (662)
Q Consensus 375 ~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 454 (662)
+...+.+....+..+|..+ ...+..|.+-+|.++.+|..+. .+|++|++++|.++.+|..+. .+
T Consensus 179 ~~~~L~L~~~~LtsLP~~I------------p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~ 242 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI------------PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DT 242 (754)
T ss_pred CceEEEeCCCCcCcCCccc------------ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--cc
Confidence 3445666555555554332 2344455555788888988765 589999999999999998765 47
Q ss_pred ccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCc
Q 044550 455 LQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRK 534 (662)
Q Consensus 455 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 534 (662)
|+.|++++|. +..+|..+. .+|+.|++++|.. ..+|..+. ++|+.|++. ++... ..+..+ . ..|..
T Consensus 243 L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls--~N~Lt-~LP~~l---p--~sL~~ 308 (754)
T PRK15370 243 IQEMELSINR-ITELPERLP--SALQSLDLFHNKI-SCLPENLP--EELRYLSVY--DNSIR-TLPAHL---P--SGITH 308 (754)
T ss_pred ccEEECcCCc-cCcCChhHh--CCCCEEECcCCcc-CccccccC--CCCcEEECC--CCccc-cCcccc---h--hhHHH
Confidence 9999999998 778998764 5899999998865 67887664 478888643 33321 111111 1 12333
Q ss_pred cccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccc
Q 044550 535 CSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLT 614 (662)
Q Consensus 535 L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~ 614 (662)
|.+.+. .+..++. . -.++|+.|.++.+... .+...+ +++|+.|++++|.+..+|..+.
T Consensus 309 L~Ls~N----~Lt~LP~----~--l~~sL~~L~Ls~N~Lt----------~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp 366 (754)
T PRK15370 309 LNVQSN----SLTALPE----T--LPPGLKTLEAGENALT----------SLPASL--PPELQVLDVSKNQITVLPETLP 366 (754)
T ss_pred HHhcCC----ccccCCc----c--ccccceeccccCCccc----------cCChhh--cCcccEEECCCCCCCcCChhhc
Confidence 443331 1111111 0 1257888888766431 011112 3689999999999988897663
Q ss_pred cccCccEEEecCCCCCCCCC
Q 044550 615 SLTNLRELKLSLCVNCEHLP 634 (662)
Q Consensus 615 ~l~~L~~L~L~~~~~~~~lp 634 (662)
++|++|+|++|... .+|
T Consensus 367 --~~L~~LdLs~N~Lt-~LP 383 (754)
T PRK15370 367 --PTITTLDVSRNALT-NLP 383 (754)
T ss_pred --CCcCEEECCCCcCC-CCC
Confidence 68999999999743 455
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=9.6e-11 Score=133.25 Aligned_cols=246 Identities=28% Similarity=0.316 Sum_probs=131.2
Q ss_pred ccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCC-cccchhhhcCCCccEEeccCCCCCccCCccccc
Q 044550 400 SILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRI-ERIPETLCELYNLQKLDIRGCQYLRGLPAGIRK 475 (662)
Q Consensus 400 ~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i-~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~ 475 (662)
..+|..++++-+||.| +..+.++|.++++|+.|.||++..+.. ..+|..+..|.+|++|.+.... ...--..++.
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~e 663 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKE 663 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHh
Confidence 4677778888999988 468899999999999999999999874 3556666669999999998654 2111223344
Q ss_pred cccccEEecCCCcccc-ccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCC-------
Q 044550 476 LMNMRSLLNDGTYLLK-YMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVS------- 547 (662)
Q Consensus 476 L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~------- 547 (662)
+.+|++|..-.+.... .+-..+..++.|.++........ ......+..+..|.+|+.|.|..+...+...
T Consensus 664 l~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~ 741 (889)
T KOG4658|consen 664 LENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG--CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLI 741 (889)
T ss_pred hhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc--cccceeecccccccCcceEEEEcCCCchhhcccccccc
Confidence 4444444433221111 11122334444443332222100 1113344455555556566666554321100
Q ss_pred --C-hhhhhhcc------------ccccccCCcEEEEecCCCCCCCCchhHHHHhh-hCCCCCCCcEEE-EeecCCCCCC
Q 044550 548 --H-VDEVERLQ------------LYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLE-ALQPPLNVEELE-IESYRGNIFP 610 (662)
Q Consensus 548 --~-~~~~~~~~------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~-l~~~~~~~lP 610 (662)
. +....... ....++|++|++..+..+............+. ...|+.++..+. +.+..+ +|
T Consensus 742 ~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~--l~ 819 (889)
T KOG4658|consen 742 VLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGG--LP 819 (889)
T ss_pred hhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCC--Cc
Confidence 0 10111111 11336888888888765433322222222222 234566676663 444332 33
Q ss_pred c--ccc-cccCccEEEecCCCCCCCCCCCCCcc-cceeecccc-cCccEeC
Q 044550 611 K--WLT-SLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNL-KSVKRVG 656 (662)
Q Consensus 611 ~--~i~-~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l-~~L~~~~ 656 (662)
. |.. .+++|..+.+..|+. ++.+| +..+.+.+| ..+....
T Consensus 820 ~i~~~~l~~~~l~~~~ve~~p~------l~~~P~~~~~~i~~~~~~~~~~~ 864 (889)
T KOG4658|consen 820 QLYWLPLSFLKLEELIVEECPK------LGKLPLLSTLTIVGCEEKLKEYP 864 (889)
T ss_pred eeEecccCccchhheehhcCcc------cccCccccccceeccccceeecC
Confidence 2 222 344577777777654 56677 666777775 4444433
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.11 E-value=5.2e-10 Score=124.62 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=19.6
Q ss_pred CCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550 595 NVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 595 ~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~ 629 (662)
+|+.|++++|.+..+|..+..+++|+.|+|++|+.
T Consensus 423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence 45555555555555555555555555555555553
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.11 E-value=8.1e-12 Score=135.04 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=34.1
Q ss_pred CCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550 592 PPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 592 ~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~ 629 (662)
-+.+|++++++.+....+|.|+..+.+|+.|.+.+|..
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence 35789999999999999999999999999999999873
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.96 E-value=2.3e-09 Score=119.64 Aligned_cols=199 Identities=19% Similarity=0.124 Sum_probs=114.9
Q ss_pred hhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550 406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND 485 (662)
Q Consensus 406 ~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~ 485 (662)
+.+++.|.+..|.+..+|.. +..|++|++++|.++.+|.. +++|+.|++++|. +..+|... .+|+.|+++
T Consensus 261 p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls 330 (788)
T PRK15387 261 PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAY 330 (788)
T ss_pred ccccceeeccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCCc---ccccccccc
Confidence 34455555556666666653 24677788888888877763 4678888888876 66676532 356677777
Q ss_pred CCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550 486 GTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR 565 (662)
Q Consensus 486 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 565 (662)
+|.. ..+|.. ..+|+.|++. +|... ..+..... |..|.+.+. .+..++. ...+|+.
T Consensus 331 ~N~L-~~LP~l---p~~Lq~LdLS--~N~Ls-~LP~lp~~------L~~L~Ls~N----~L~~LP~-------l~~~L~~ 386 (788)
T PRK15387 331 NNQL-TSLPTL---PSGLQELSVS--DNQLA-SLPTLPSE------LYKLWAYNN----RLTSLPA-------LPSGLKE 386 (788)
T ss_pred cCcc-cccccc---ccccceEecC--CCccC-CCCCCCcc------cceehhhcc----ccccCcc-------cccccce
Confidence 7754 556642 2467777632 23221 11221222 222222211 0011111 1246788
Q ss_pred EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcccceee
Q 044550 566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQ 645 (662)
Q Consensus 566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~LpL~~l~ 645 (662)
|+++.+... .+. ..+++|+.|++++|.+..+|.. ..+|+.|+|++|.. ..||-....
T Consensus 387 LdLs~N~Lt-----------~LP--~l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqL-------t~LP~sl~~ 443 (788)
T PRK15387 387 LIVSGNRLT-----------SLP--VLPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQL-------TRLPESLIH 443 (788)
T ss_pred EEecCCccc-----------CCC--CcccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcc-------cccChHHhh
Confidence 888765420 011 1246899999999999888864 35788999999973 344422334
Q ss_pred cccccCccEeCCcccC
Q 044550 646 LKNLKSVKRVGNEFLG 661 (662)
Q Consensus 646 l~~l~~L~~~~n~~~g 661 (662)
+.++..|++.+|.|+|
T Consensus 444 L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 444 LSSETTVNLEGNPLSE 459 (788)
T ss_pred ccCCCeEECCCCCCCc
Confidence 4566667777787775
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.84 E-value=1e-10 Score=126.66 Aligned_cols=203 Identities=21% Similarity=0.231 Sum_probs=103.9
Q ss_pred cchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccccc-
Q 044550 401 ILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKL- 476 (662)
Q Consensus 401 ~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L- 476 (662)
.+|.+...+.+|..+ .|.+..+|..+..+..|++|++..|.++.+|+...++++|++|||..|+ +..+|+.+-..
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~ 333 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVL 333 (1081)
T ss_pred cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhh
Confidence 344445555555555 4566667777777777777777777777777777777777777777766 66666633221
Q ss_pred c-cccEEecCCCccccccCC-cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhh
Q 044550 477 M-NMRSLLNDGTYLLKYMPI-GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVER 554 (662)
Q Consensus 477 ~-~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~ 554 (662)
. .|+.|+.+.+.. ..+|. +=..+..|+.|. .++|.... ..+.-+.+...|+.|.+..- .+. ....
T Consensus 334 ~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~Ly--lanN~Ltd---~c~p~l~~~~hLKVLhLsyN----rL~---~fpa 400 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKL-STLPSYEENNHAALQELY--LANNHLTD---SCFPVLVNFKHLKVLHLSYN----RLN---SFPA 400 (1081)
T ss_pred hHHHHHHhhhhccc-cccccccchhhHHHHHHH--HhcCcccc---cchhhhccccceeeeeeccc----ccc---cCCH
Confidence 1 245555554432 33331 112344555553 34443322 22233333334444333321 001 1112
Q ss_pred ccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550 555 LQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 555 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~ 628 (662)
..+.++..|+.|+++.+.. ....+.+..++.|+.|...+|....+| .+..++.|+.++|+.|.
T Consensus 401 s~~~kle~LeeL~LSGNkL----------~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKL----------TTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred HHHhchHHhHHHhcccchh----------hhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch
Confidence 2344445555555554432 112233344455666666666666666 55566666666666665
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=4.3e-10 Score=115.71 Aligned_cols=89 Identities=34% Similarity=0.525 Sum_probs=60.3
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI 495 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~ 495 (662)
.|.+..+|..+++|..|.||+|+.|++..+|..++.|+ |+.|-+++|+ ++.+|..++.+.+|.+|+.+.|.. ..+|.
T Consensus 107 ~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei-~slps 183 (722)
T KOG0532|consen 107 HNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEI-QSLPS 183 (722)
T ss_pred hccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhh-hhchH
Confidence 46666677777777777777777777777777776654 6777777666 667777777667777777776653 55666
Q ss_pred cCCCCCCCCccC
Q 044550 496 GISRLTSLRTLE 507 (662)
Q Consensus 496 ~i~~L~~L~~L~ 507 (662)
.++.|.+|+.|.
T Consensus 184 ql~~l~slr~l~ 195 (722)
T KOG0532|consen 184 QLGYLTSLRDLN 195 (722)
T ss_pred HhhhHHHHHHHH
Confidence 666666666553
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.74 E-value=4.3e-10 Score=110.81 Aligned_cols=76 Identities=29% Similarity=0.404 Sum_probs=38.9
Q ss_pred cccccccccccCcc-cCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCC
Q 044550 412 LRALRNWIREIPEN-VGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGT 487 (662)
Q Consensus 412 Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 487 (662)
+|.-.|.|+.+|+. |+.++.||.|+|++|.|+.| |..+.+|.+|..|-+-+++.++.+|. .++.|..|+.|.+.-|
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 33334555555432 34455566666666665554 44555555555555555333555554 2345555555544444
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.63 E-value=3.6e-09 Score=109.22 Aligned_cols=242 Identities=20% Similarity=0.154 Sum_probs=143.3
Q ss_pred hhcCcccccc---cccc-----cccCcccCCCCccceeeecCCCCcc-------cchhhhcCCCccEEeccCCCCCccCC
Q 044550 406 FSKLVFLRAL---RNWI-----REIPENVGKLIHLKYLNLSELRIER-------IPETLCELYNLQKLDIRGCQYLRGLP 470 (662)
Q Consensus 406 ~~~l~~Lrvl---~~~~-----~~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~l~~~~~l~~lP 470 (662)
+..+..|+.+ ++.+ ..++..+...+.|++|+++++.+.. ++..+.++.+|+.|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 4444445555 3443 3456667778889999999887652 44567889999999999998444556
Q ss_pred cccccccc---ccEEecCCCcccc----ccCCcCCCC-CCCCccCceeecCccCCCC-ccCccccccCcccCccccccCC
Q 044550 471 AGIRKLMN---MRSLLNDGTYLLK----YMPIGISRL-TSLRTLEKFVVGGGVDGGG-TCRLESLKNLQLLRKCSIEGLK 541 (662)
Q Consensus 471 ~~i~~L~~---L~~L~l~~~~~~~----~~p~~i~~L-~~L~~L~~~~~~~~~~~~~-~~~l~~L~~L~~L~~L~i~~~~ 541 (662)
..+..+.+ |++|++++|.... .+...+..+ ++|+.|++. ++...... ......+..++.|+.|.+.+.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~--~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n- 175 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG--RNRLEGASCEALAKALRANRDLKELNLANN- 175 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC--CCcCCchHHHHHHHHHHhCCCcCEEECcCC-
Confidence 66666665 9999999986531 223345566 788888643 33221111 112223444555666666553
Q ss_pred CCCCCCC-hhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-Ccccc-----
Q 044550 542 GLSNVSH-VDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLT----- 614 (662)
Q Consensus 542 ~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~----- 614 (662)
.+.. ........+..+.+|+.|+++.+.. .......+...+...++|+.|++++|..... +..+.
T Consensus 176 ---~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-----~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~ 247 (319)
T cd00116 176 ---GIGDAGIRALAEGLKANCNLEVLDLNNNGL-----TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247 (319)
T ss_pred ---CCchHHHHHHHHHHHhCCCCCEEeccCCcc-----ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc
Confidence 1111 1111222345567999999987643 1122334455566778999999999875421 11222
Q ss_pred cccCccEEEecCCCCCCCCCCCCCcccceeecccccCccEeCCccc
Q 044550 615 SLTNLRELKLSLCVNCEHLPPLGKLPLEKLQLKNLKSVKRVGNEFL 660 (662)
Q Consensus 615 ~l~~L~~L~L~~~~~~~~lp~l~~LpL~~l~l~~l~~L~~~~n~~~ 660 (662)
..+.|++|++++|..... ....++-..-.+.++..+++.+|.|.
T Consensus 248 ~~~~L~~L~l~~n~i~~~--~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 248 PNISLLTLSLSCNDITDD--GAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred cCCCceEEEccCCCCCcH--HHHHHHHHHhcCCCccEEECCCCCCc
Confidence 247999999999973310 01112201112267888888888876
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.59 E-value=5.5e-09 Score=107.86 Aligned_cols=197 Identities=20% Similarity=0.153 Sum_probs=125.4
Q ss_pred cCcccCCCCccceeeecCCCCc-ccchhhhcCCC---ccEEeccCCCCCc-----cCCcccccc-ccccEEecCCCccc-
Q 044550 422 IPENVGKLIHLKYLNLSELRIE-RIPETLCELYN---LQKLDIRGCQYLR-----GLPAGIRKL-MNMRSLLNDGTYLL- 490 (662)
Q Consensus 422 lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~---L~~L~l~~~~~l~-----~lP~~i~~L-~~L~~L~l~~~~~~- 490 (662)
++..+..+++|++|++++|.+. ..+..+..+.. |+.|++++|. +. .+...+..+ ++|+.|++++|...
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence 4556777899999999999986 45556666665 9999999998 43 233455667 89999999999753
Q ss_pred ---cccCCcCCCCCCCCccCceeecCccCCCC-ccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcE
Q 044550 491 ---KYMPIGISRLTSLRTLEKFVVGGGVDGGG-TCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRL 566 (662)
Q Consensus 491 ---~~~p~~i~~L~~L~~L~~~~~~~~~~~~~-~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 566 (662)
..++..+..+++|++|++. .+...... ......+..+..|+.|++.+... . ..........+..+++|+.|
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~--~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~--~~~~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLA--NNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-T--DEGASALAETLASLKSLEVL 226 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECc--CCCCchHHHHHHHHHHHhCCCCCEEeccCCcc-C--hHHHHHHHHHhcccCCCCEE
Confidence 1344456677889988743 33321100 11122345556777777766511 1 11112233446678899999
Q ss_pred EEEecCCCCCCCCchhHHHHhhhC-CCCCCCcEEEEeecCCC-----CCCcccccccCccEEEecCCCC
Q 044550 567 GLQFGGDIEGRRKNEKDKQLLEAL-QPPLNVEELEIESYRGN-----IFPKWLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 567 ~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~-----~lP~~i~~l~~L~~L~L~~~~~ 629 (662)
+++.+.. ...........+ .+.+.|++|++++|... .++..+..+++|++|++++|..
T Consensus 227 ~ls~n~l-----~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 227 NLGDNNL-----TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred ecCCCcC-----chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 9988653 111112222222 24589999999999764 1233444678999999999974
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.55 E-value=7.9e-09 Score=106.64 Aligned_cols=183 Identities=26% Similarity=0.355 Sum_probs=137.5
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI 495 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~ 495 (662)
.|.+..+|..++.+..|..|.|..|.+..+|..+++|..|.+|||+.|. +..+|..+..|+ |+.|-+++|.+ +.+|+
T Consensus 84 rNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNkl-~~lp~ 160 (722)
T KOG0532|consen 84 RNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNKL-TSLPE 160 (722)
T ss_pred ccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCcc-ccCCc
Confidence 4778889999999999999999999999999999999999999999998 999999999886 99999998864 89999
Q ss_pred cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCC
Q 044550 496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE 575 (662)
Q Consensus 496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 575 (662)
+++.+..|..|+ ...|.. ......+..|..|+.|.+..- +|
T Consensus 161 ~ig~~~tl~~ld--~s~nei----~slpsql~~l~slr~l~vrRn---------------------~l------------ 201 (722)
T KOG0532|consen 161 EIGLLPTLAHLD--VSKNEI----QSLPSQLGYLTSLRDLNVRRN---------------------HL------------ 201 (722)
T ss_pred ccccchhHHHhh--hhhhhh----hhchHHhhhHHHHHHHHHhhh---------------------hh------------
Confidence 999888998887 333333 334445555665655444321 00
Q ss_pred CCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCC---CCCCCCCcc-cceeecccc
Q 044550 576 GRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCE---HLPPLGKLP-LEKLQLKNL 649 (662)
Q Consensus 576 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~---~lp~l~~Lp-L~~l~l~~l 649 (662)
..+++.+. .-.|.+|+++.|....+|-+|..+..|++|.|.+|.+.. ++-.-|.+. .++|...-|
T Consensus 202 --------~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 202 --------EDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred --------hhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 01111222 234778888888888889888889999999998887542 112256777 888887776
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=6.1e-08 Score=103.22 Aligned_cols=96 Identities=34% Similarity=0.458 Sum_probs=81.5
Q ss_pred cccccccccccccCcccCCCC-ccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCc
Q 044550 410 VFLRALRNWIREIPENVGKLI-HLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTY 488 (662)
Q Consensus 410 ~~Lrvl~~~~~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 488 (662)
..|....+.+.++|+.++.+. +|++|++++|.+..+|..++.+++|+.|++.+|. +..+|...+.+++|+.|++++|.
T Consensus 119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred eEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCCc
Confidence 333333678899988888885 9999999999999999889999999999999998 88899877789999999999996
Q ss_pred cccccCCcCCCCCCCCccC
Q 044550 489 LLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 489 ~~~~~p~~i~~L~~L~~L~ 507 (662)
. ..+|..++.+..|++|.
T Consensus 198 i-~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 198 I-SDLPPEIELLSALEELD 215 (394)
T ss_pred c-ccCchhhhhhhhhhhhh
Confidence 5 78888777777788885
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.40 E-value=4e-08 Score=89.90 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=14.4
Q ss_pred CCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccc-ccccccEEecCCC
Q 044550 429 LIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIR-KLMNMRSLLNDGT 487 (662)
Q Consensus 429 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~-~L~~L~~L~l~~~ 487 (662)
+.+|+.|+|++|.|+.++ .+..|++|++|++++|. +..++..+. .+++|++|++++|
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCC
Confidence 444444444444444442 34444444444444444 444433232 3444444444444
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=1.3e-06 Score=65.38 Aligned_cols=58 Identities=29% Similarity=0.459 Sum_probs=49.6
Q ss_pred CccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCc
Q 044550 430 IHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTY 488 (662)
Q Consensus 430 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~ 488 (662)
++|++|++++|.++.+|+ .+.++++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999999985 77889999999999888 666654 67899999999999885
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.22 E-value=7.6e-07 Score=94.84 Aligned_cols=192 Identities=28% Similarity=0.299 Sum_probs=127.7
Q ss_pred ccccccCcccCCCCccceeeecCCCCcccchhhhcCC-CccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELY-NLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI 495 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~ 495 (662)
+.+...+..+..+..+..|++.++.++.+|+.++.+. +|+.|+++++. +..+|..++.+++|+.|++++|.. ..+|.
T Consensus 103 ~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~ 180 (394)
T COG4886 103 NRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDL-SDLPK 180 (394)
T ss_pred cccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCchh-hhhhh
Confidence 3333334445566889999999999999999999885 99999999998 888988899999999999999975 77888
Q ss_pred cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCC
Q 044550 496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE 575 (662)
Q Consensus 496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 575 (662)
..+.+++|+.|++ .++.. ...+..+ ..+..|..+.+.+-. .......+.++.++..|.+..+..
T Consensus 181 ~~~~~~~L~~L~l--s~N~i-~~l~~~~---~~~~~L~~l~~~~N~--------~~~~~~~~~~~~~l~~l~l~~n~~-- 244 (394)
T COG4886 181 LLSNLSNLNNLDL--SGNKI-SDLPPEI---ELLSALEELDLSNNS--------IIELLSSLSNLKNLSGLELSNNKL-- 244 (394)
T ss_pred hhhhhhhhhheec--cCCcc-ccCchhh---hhhhhhhhhhhcCCc--------ceecchhhhhcccccccccCCcee--
Confidence 7778889998863 22221 1111111 112223333332210 000111233444444454332211
Q ss_pred CCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCC
Q 044550 576 GRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP 635 (662)
Q Consensus 576 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~ 635 (662)
......+..+++|+.|++++|.+..++. ++.+.+|+.|+++++.....+|.
T Consensus 245 --------~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 245 --------EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred --------eeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 1113455667789999999999888776 88999999999999876554443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.22 E-value=1.2e-06 Score=80.27 Aligned_cols=127 Identities=28% Similarity=0.280 Sum_probs=48.9
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhh-c
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLC-E 451 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~-~ 451 (662)
+.+.|.|+++++.+..+ ..+. ..+.+++.|...+|.+..+. ++..+++|+.|++++|.|+.+++.+. .
T Consensus 18 ~~~~~~L~L~~n~I~~I-e~L~---------~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-ENLG---------ATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp -------------------S-----------TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred ccccccccccccccccc-cchh---------hhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence 34567888888777544 2211 11333444444468888874 68889999999999999999977664 6
Q ss_pred CCCccEEeccCCCCCccCC--ccccccccccEEecCCCccccccCC----cCCCCCCCCccCceeec
Q 044550 452 LYNLQKLDIRGCQYLRGLP--AGIRKLMNMRSLLNDGTYLLKYMPI----GISRLTSLRTLEKFVVG 512 (662)
Q Consensus 452 L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 512 (662)
+++|+.|++++|+ +..+- ..+..+++|+.|++.+|+.. ..+. -+..+++|+.|+...+.
T Consensus 87 lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 87 LPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEcc
Confidence 9999999999988 65543 34678999999999999763 2222 25567778887755443
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.19 E-value=3.5e-06 Score=86.61 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=53.0
Q ss_pred cCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcC
Q 044550 426 VGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI 497 (662)
Q Consensus 426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i 497 (662)
+..+.++++|++++|.++.+|. + -.+|+.|.+++|..+..+|..+ ..+|++|++++|..+..+|..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccccc
Confidence 3446889999999999999983 2 2369999999999888888765 3589999999996667777643
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.13 E-value=8.8e-08 Score=94.85 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=96.3
Q ss_pred cCCCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecC-CCCccc
Q 044550 371 SFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSE-LRIERI 445 (662)
Q Consensus 371 ~~~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~-~~i~~l 445 (662)
..+....-+.+..+.+..+|.. .|..++.||.+ +|.|..+ |..|..|..|-.|-+-+ |.|+.+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~------------aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPG------------AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred cCCCcceEEEeccCCcccCChh------------hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 3467778888888888877643 37778888887 4778777 88888888887776666 889999
Q ss_pred ch-hhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC-cCCCCCCCCccC
Q 044550 446 PE-TLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI-GISRLTSLRTLE 507 (662)
Q Consensus 446 p~-~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~ 507 (662)
|+ .+++|..|+.|.+.-|+......+.+..|++|..|.+..|.. ..++. .+..+.+++++.
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHh
Confidence 87 688999999999988774444456788999999999988864 66666 577788888775
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5.4e-06 Score=56.85 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=32.5
Q ss_pred CccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCC
Q 044550 430 IHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLP 470 (662)
Q Consensus 430 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP 470 (662)
++|++|++++|.|+.+|+.+++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 47899999999999998889999999999999987 66554
No 35
>PLN03150 hypothetical protein; Provisional
Probab=97.96 E-value=7.5e-06 Score=91.67 Aligned_cols=76 Identities=30% Similarity=0.501 Sum_probs=35.5
Q ss_pred cCcccCCCCccceeeecCCCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcC
Q 044550 422 IPENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI 497 (662)
Q Consensus 422 lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i 497 (662)
+|..++.|.+|++|+|++|.+. .+|..++++.+|+.|+|++|.....+|..+++|++|++|++++|.....+|..+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 3444444444444444444443 444444444444444444444333444444444444444444444433444443
No 36
>PLN03150 hypothetical protein; Provisional
Probab=97.86 E-value=1.7e-05 Score=88.78 Aligned_cols=92 Identities=22% Similarity=0.341 Sum_probs=77.6
Q ss_pred ccceeeecCCCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCce
Q 044550 431 HLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKF 509 (662)
Q Consensus 431 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 509 (662)
.+..|+|++|.+. .+|..+++|.+|+.|+|++|.....+|..++.+++|+.|++++|.....+|..+++|++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L- 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL- 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC-
Confidence 4788999999987 78999999999999999999855689999999999999999999887789999999999999974
Q ss_pred eecCccCCCCccCcc
Q 044550 510 VVGGGVDGGGTCRLE 524 (662)
Q Consensus 510 ~~~~~~~~~~~~~l~ 524 (662)
..+...+..+..+.
T Consensus 498 -s~N~l~g~iP~~l~ 511 (623)
T PLN03150 498 -NGNSLSGRVPAALG 511 (623)
T ss_pred -cCCcccccCChHHh
Confidence 34444444444443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.85 E-value=2.8e-06 Score=81.30 Aligned_cols=77 Identities=22% Similarity=0.206 Sum_probs=53.4
Q ss_pred CCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550 428 KLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 428 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 507 (662)
-...|..|||++|.|+.+-+++.-++.++.|++++|. +..+-. +..|.+|.+|++++|.. ..+.-.-.+|.+.++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccchh-HhhhhhHhhhcCEeeee
Confidence 3456888888888888888888888888888888887 555533 77788888888888753 33322223444555553
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.71 E-value=3.7e-05 Score=57.39 Aligned_cols=55 Identities=31% Similarity=0.414 Sum_probs=46.2
Q ss_pred cccccccccccccCc-ccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCC
Q 044550 410 VFLRALRNWIREIPE-NVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQ 464 (662)
Q Consensus 410 ~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 464 (662)
+.|.+-+|.+..+|+ .+..+++|++|++++|.++.+|+ .+.++++|++|++++|+
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 344444678888874 66889999999999999999865 78999999999999986
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1e-05 Score=81.72 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=21.7
Q ss_pred CCCCCCCcEEEEeecCCCCCCc--ccccccCccEEEecCCC
Q 044550 590 LQPPLNVEELEIESYRGNIFPK--WLTSLTNLRELKLSLCV 628 (662)
Q Consensus 590 l~~~~~L~~L~l~~~~~~~lP~--~i~~l~~L~~L~L~~~~ 628 (662)
...+++|++|.+..|.....|+ .+..+++|+.|.+-.+.
T Consensus 297 t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 297 THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 3445677777777776543332 23355666666655443
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.50 E-value=2.6e-05 Score=76.72 Aligned_cols=70 Identities=27% Similarity=0.288 Sum_probs=43.9
Q ss_pred ccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCC-----CCcccccccCccEEEecCCCC
Q 044550 555 LQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNI-----FPKWLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 555 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----lP~~i~~l~~L~~L~L~~~~~ 629 (662)
..+...+.|+.+.+..++..+ .......+.+..+++|+.|+|..|.++. +-.-+..+++|+.|++++|..
T Consensus 179 ~~~~~~~~leevr~~qN~I~~-----eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRP-----EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHhccccceEEEecccccC-----chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 344555777888777765422 1123445667778888888888887543 111223557888888888863
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=2e-05 Score=79.64 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=50.3
Q ss_pred cccCCCCccceeeecCCCCcccch--hhhcCCCccEEeccCCCCCcc---CCccccccccccEEecCCCcc
Q 044550 424 ENVGKLIHLKYLNLSELRIERIPE--TLCELYNLQKLDIRGCQYLRG---LPAGIRKLMNMRSLLNDGTYL 489 (662)
Q Consensus 424 ~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~---lP~~i~~L~~L~~L~l~~~~~ 489 (662)
..-.++..|+...|+++.+...+. ....|++++.|||++|- +.. +-.-...|++|+.|+++.|..
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccc
Confidence 334578899999999999887774 77889999999999875 322 222346789999999999864
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=4.9e-05 Score=85.00 Aligned_cols=105 Identities=29% Similarity=0.272 Sum_probs=70.0
Q ss_pred CccceeeecCCC-C-cccchhhh-cCCCccEEeccCCCCC-ccCCccccccccccEEecCCCccccccCCcCCCCCCCCc
Q 044550 430 IHLKYLNLSELR-I-ERIPETLC-ELYNLQKLDIRGCQYL-RGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRT 505 (662)
Q Consensus 430 ~~Lr~L~L~~~~-i-~~lp~~i~-~L~~L~~L~l~~~~~l-~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 505 (662)
.+|++|+++|.. + ...|..++ .|++|++|.+.+-... ..+-.-..++++|+.||+++++. ..+ .++++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHH
Confidence 578888888865 2 24455555 4888999999874421 11223345788999999999864 334 78888999998
Q ss_pred cCceeecCccCCCCccCccccccCcccCccccccC
Q 044550 506 LEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGL 540 (662)
Q Consensus 506 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~ 540 (662)
|.+....-.. ...+..|-+|++|+.|+|+.-
T Consensus 200 L~mrnLe~e~----~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 200 LSMRNLEFES----YQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HhccCCCCCc----hhhHHHHhcccCCCeeecccc
Confidence 8755433322 345666777777777777764
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=1.7e-05 Score=76.16 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=44.0
Q ss_pred cccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCccc---ccccCccEEEecCCC
Q 044550 558 YNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL---TSLTNLRELKLSLCV 628 (662)
Q Consensus 558 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i---~~l~~L~~L~L~~~~ 628 (662)
..+++|..|+++.+..+ .......+-.++.|++|.++.|.+.. |..+ .+.|.|++|++.+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l--------~~~~~~~~~kf~~L~~lSlsRCY~i~-p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVML--------KNDCFQEFFKFNYLQHLSLSRCYDII-PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeecccccccc--------CchHHHHHHhcchheeeehhhhcCCC-hHHeeeeccCcceEEEEecccc
Confidence 46788888888877542 12445566678889999998887542 5443 367889999988885
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.39 E-value=4.6e-05 Score=81.47 Aligned_cols=78 Identities=32% Similarity=0.474 Sum_probs=41.3
Q ss_pred cCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCc
Q 044550 426 VGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRT 505 (662)
Q Consensus 426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 505 (662)
++.+.+|.+|++.+|.|..+...+..+.+|++|++++|. +..+. ++..++.|+.|++++|.. ..+ .++..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGNLI-SDI-SGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccCcc-hhc-cCCccchhhhc
Confidence 455556666666666665554445556666666666655 44442 245555566666666543 222 23444555555
Q ss_pred cC
Q 044550 506 LE 507 (662)
Q Consensus 506 L~ 507 (662)
++
T Consensus 167 l~ 168 (414)
T KOG0531|consen 167 LD 168 (414)
T ss_pred cc
Confidence 54
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.39 E-value=3.3e-05 Score=74.18 Aligned_cols=98 Identities=32% Similarity=0.343 Sum_probs=64.5
Q ss_pred hhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550 406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND 485 (662)
Q Consensus 406 ~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~ 485 (662)
+..+..|....|.++.+-+++.-++.+|.|+++.|.|..+-. +..|++|+.||+++|. +..+...-.+|-|.+.|.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 334444444456777776666667788888888888777643 7778888888888876 55554434466677777777
Q ss_pred CCccccccCCcCCCCCCCCccC
Q 044550 486 GTYLLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 486 ~~~~~~~~p~~i~~L~~L~~L~ 507 (662)
+|.. ..+ .++++|-+|..|+
T Consensus 361 ~N~i-E~L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 361 QNKI-ETL-SGLRKLYSLVNLD 380 (490)
T ss_pred hhhH-hhh-hhhHhhhhheecc
Confidence 7743 222 4566666666666
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.28 E-value=0.00025 Score=48.56 Aligned_cols=35 Identities=34% Similarity=0.395 Sum_probs=30.9
Q ss_pred CCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550 594 LNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 594 ~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~ 628 (662)
++|++|++++|.+..+|..+..|++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 47999999999999999889999999999999997
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.12 E-value=6.8e-05 Score=80.14 Aligned_cols=98 Identities=29% Similarity=0.375 Sum_probs=73.8
Q ss_pred hhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEE
Q 044550 406 FSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL 482 (662)
Q Consensus 406 ~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L 482 (662)
+..++.|..+ +|.+..+...+..+++|++|++++|.|+.+ ..+..+..|+.|++.+|. +..++. +..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccC-Cccchhhhcc
Confidence 3445555555 567777765578899999999999999988 458888899999999998 776654 6679999999
Q ss_pred ecCCCccccccCCc-CCCCCCCCccC
Q 044550 483 LNDGTYLLKYMPIG-ISRLTSLRTLE 507 (662)
Q Consensus 483 ~l~~~~~~~~~p~~-i~~L~~L~~L~ 507 (662)
++++|.. ..++.. ...+.+|+.+.
T Consensus 168 ~l~~n~i-~~ie~~~~~~~~~l~~l~ 192 (414)
T KOG0531|consen 168 DLSYNRI-VDIENDELSELISLEELD 192 (414)
T ss_pred cCCcchh-hhhhhhhhhhccchHHHh
Confidence 9999975 333332 46677777774
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.06 E-value=3.6e-05 Score=75.74 Aligned_cols=193 Identities=17% Similarity=0.114 Sum_probs=92.0
Q ss_pred ccCCCCccceeeecCCCCc-----ccchhhhcCCCccEEeccCCCCCccCC--------------ccccccccccEEecC
Q 044550 425 NVGKLIHLKYLNLSELRIE-----RIPETLCELYNLQKLDIRGCQYLRGLP--------------AGIRKLMNMRSLLND 485 (662)
Q Consensus 425 ~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lP--------------~~i~~L~~L~~L~l~ 485 (662)
.+-..++|++|+||.|.+. .+-.-|.+++.|+.|.+.+|. +...- .-+.+-++||.+...
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 3445668999999998755 223346678888888888887 43211 112234567777666
Q ss_pred CCccccccC-----CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCC-hhhhhhccccc
Q 044550 486 GTYLLKYMP-----IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSH-VDEVERLQLYN 559 (662)
Q Consensus 486 ~~~~~~~~p-----~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~-~~~~~~~~l~~ 559 (662)
+|+. ..-+ ..+...+.|+++.+..++....+. ......+.+.+.|++|++..- .+.. -.......++.
T Consensus 166 rNrl-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DN----tft~egs~~LakaL~s 239 (382)
T KOG1909|consen 166 RNRL-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDN----TFTLEGSVALAKALSS 239 (382)
T ss_pred cccc-ccccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccc----hhhhHHHHHHHHHhcc
Confidence 6643 2211 223344555555432222211000 011223344444444444321 0000 01122233445
Q ss_pred cccCCcEEEEecCCCCCCCCchhHHHHhhhCC-CCCCCcEEEEeecCCCC-----CCcccccccCccEEEecCCCC
Q 044550 560 KKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQ-PPLNVEELEIESYRGNI-----FPKWLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 560 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~-----lP~~i~~l~~L~~L~L~~~~~ 629 (662)
.++|+.|++++|.. .+.....+.+.+. ..|+|+.|.+.+|..+. +-.++...+.|.+|+|++|..
T Consensus 240 ~~~L~El~l~dcll-----~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 240 WPHLRELNLGDCLL-----ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchheeeccccccc-----ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 55666666665532 1112222333322 24666666666665432 122344566666666666653
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.06 E-value=0.0019 Score=66.78 Aligned_cols=160 Identities=18% Similarity=0.263 Sum_probs=91.3
Q ss_pred hhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCcccccc
Q 044550 449 LCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKN 528 (662)
Q Consensus 449 i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 528 (662)
+..+.++..|++++|. +..+|. -..+|+.|.+++|..+..+|..+ ..+|+.|.+.. +......+.
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~--Cs~L~sLP~------- 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCH--CPEISGLPE------- 112 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccC--ccccccccc-------
Confidence 5567899999999996 999983 23469999999998888888755 35788886432 211111121
Q ss_pred CcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCC
Q 044550 529 LQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNI 608 (662)
Q Consensus 529 L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 608 (662)
.|..|.+.+. ....+..+ -.+|+.|.+..... . ...... -.-|++|+.|.+.+|....
T Consensus 113 --sLe~L~L~~n-~~~~L~~L----------PssLk~L~I~~~n~-------~-~~~~lp-~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 113 --SVRSLEIKGS-ATDSIKNV----------PNGLTSLSINSYNP-------E-NQARID-NLISPSLKTLSLTGCSNII 170 (426)
T ss_pred --ccceEEeCCC-CCcccccC----------cchHhheecccccc-------c-cccccc-cccCCcccEEEecCCCccc
Confidence 1222222211 00111111 12455565532110 0 000000 0135799999999998776
Q ss_pred CCcccccccCccEEEecCCCCCC-CCCCCCCcc--cceeecccc
Q 044550 609 FPKWLTSLTNLRELKLSLCVNCE-HLPPLGKLP--LEKLQLKNL 649 (662)
Q Consensus 609 lP~~i~~l~~L~~L~L~~~~~~~-~lp~l~~Lp--L~~l~l~~l 649 (662)
+|..+. .+|+.|+++.|.... .++ .+.+| + .+.+.+|
T Consensus 171 LP~~LP--~SLk~L~ls~n~~~sLeI~-~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 171 LPEKLP--ESLQSITLHIEQKTTWNIS-FEGFPDGL-DIDLQNS 210 (426)
T ss_pred Cccccc--ccCcEEEecccccccccCc-cccccccc-Eechhhh
Confidence 675544 589999998763111 122 34566 5 7777766
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.05 E-value=5.7e-05 Score=80.95 Aligned_cols=87 Identities=28% Similarity=0.318 Sum_probs=60.3
Q ss_pred ccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCC
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPI 495 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~ 495 (662)
|.+..+-.++.-+++|+.|+|++|++...- .+..|.+|++|||+.|. +..+|. +.... +|..|++++|.. ..+ .
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l-~tL-~ 248 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNAL-TTL-R 248 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHH-Hhh-h
Confidence 444444455666788888888888877764 67788888888888877 777775 22233 388888888754 333 5
Q ss_pred cCCCCCCCCccCc
Q 044550 496 GISRLTSLRTLEK 508 (662)
Q Consensus 496 ~i~~L~~L~~L~~ 508 (662)
++.+|++|+.|++
T Consensus 249 gie~LksL~~LDl 261 (1096)
T KOG1859|consen 249 GIENLKSLYGLDL 261 (1096)
T ss_pred hHHhhhhhhccch
Confidence 6778888888874
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=1.8e-05 Score=75.95 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=39.3
Q ss_pred CCCCCCcEEEEeecCCCCCCcccc---cccCccEEEecCCCCCC--CCCCCCCcc-cceeeccccc
Q 044550 591 QPPLNVEELEIESYRGNIFPKWLT---SLTNLRELKLSLCVNCE--HLPPLGKLP-LEKLQLKNLK 650 (662)
Q Consensus 591 ~~~~~L~~L~l~~~~~~~lP~~i~---~l~~L~~L~L~~~~~~~--~lp~l~~Lp-L~~l~l~~l~ 650 (662)
..+++|..|+++.+.-.+ |..+. .|+.|++|.|+.|.... .+-.++..| |.+|++.+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~-~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLK-NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccC-chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 356788888888776433 44433 67888888888887431 222367788 8888877653
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.60 E-value=0.00015 Score=61.72 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=45.2
Q ss_pred CCCCccceeeecCCCCcccchhhhcCC-CccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCc
Q 044550 427 GKLIHLKYLNLSELRIERIPETLCELY-NLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRT 505 (662)
Q Consensus 427 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 505 (662)
....+|...+|++|.++.+|+.+.... .+++|++.+|. +..+|.++..++.|+.|+++.|.. ...|.-|..|.+|-.
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCcc-ccchHHHHHHHhHHH
Confidence 344556666666666666666555433 56666666665 666666666666666666666653 444444444444444
Q ss_pred c
Q 044550 506 L 506 (662)
Q Consensus 506 L 506 (662)
|
T Consensus 128 L 128 (177)
T KOG4579|consen 128 L 128 (177)
T ss_pred h
Confidence 4
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.50 E-value=0.00055 Score=58.44 Aligned_cols=87 Identities=21% Similarity=0.259 Sum_probs=46.8
Q ss_pred ceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCC
Q 044550 375 NVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYN 454 (662)
Q Consensus 375 ~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 454 (662)
.+..++++.+....+|..+..- |+..+.|..-+|.+.++|..+..++.||.|+++.|.+...|..|..|.+
T Consensus 54 el~~i~ls~N~fk~fp~kft~k---------f~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIK---------FPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred eEEEEecccchhhhCCHHHhhc---------cchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHh
Confidence 3445666666666665544210 1122222222455666666666666666666666666666666666666
Q ss_pred ccEEeccCCCCCccCCc
Q 044550 455 LQKLDIRGCQYLRGLPA 471 (662)
Q Consensus 455 L~~L~l~~~~~l~~lP~ 471 (662)
|-.||..++. ...+|-
T Consensus 125 l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 125 LDMLDSPENA-RAEIDV 140 (177)
T ss_pred HHHhcCCCCc-cccCcH
Confidence 6666666554 444443
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.0016 Score=62.95 Aligned_cols=182 Identities=18% Similarity=0.090 Sum_probs=86.9
Q ss_pred CCccceeeecCCCCccc---chhhhcCCCccEEeccCCCCCccCCccc-cccccccEEecCCCccc-cccCCcCCCCCCC
Q 044550 429 LIHLKYLNLSELRIERI---PETLCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLL-KYMPIGISRLTSL 503 (662)
Q Consensus 429 l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~~-~~~p~~i~~L~~L 503 (662)
..+++.|+|.+|.|+.. -.-+.+|+.|++|+++.|. +...-... ..+.+|+.|-+.++..- +..-..+..++.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 56788888888887643 2234578888888888766 32211111 24567888877765431 1122234445555
Q ss_pred CccCceeecCccCCCCccC---cc-ccccCcccCccccccCCCCCCCCChhhhhhcccc-ccccCCcEEEEecCCCCCCC
Q 044550 504 RTLEKFVVGGGVDGGGTCR---LE-SLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLY-NKKNLLRLGLQFGGDIEGRR 578 (662)
Q Consensus 504 ~~L~~~~~~~~~~~~~~~~---l~-~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~ 578 (662)
+.|.+..++.......... +. ++..|..+..+...+. +. ..+. -.+++.++.+.-++
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~----~~--------~~l~r~Fpnv~sv~v~e~P------ 210 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL----NK--------NKLSRIFPNVNSVFVCEGP------ 210 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH----HH--------HhHHhhcccchheeeecCc------
Confidence 5554222111000000000 00 1111111111000000 00 0011 12445555554433
Q ss_pred CchhHHHHhhhCCCCCCCcEEEEeecCCCCCCccc-----ccccCccEEEecCCCCCCCCC
Q 044550 579 KNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL-----TSLTNLRELKLSLCVNCEHLP 634 (662)
Q Consensus 579 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i-----~~l~~L~~L~L~~~~~~~~lp 634 (662)
......-++..+++.+.-|.+..+++ -+|- ..++.|.-|.+++++..+.+.
T Consensus 211 --lK~~s~ek~se~~p~~~~LnL~~~~i---dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 211 --LKTESSEKGSEPFPSLSCLNLGANNI---DSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred --ccchhhcccCCCCCcchhhhhccccc---ccHHHHHHHcCCchhheeeccCCccccccc
Confidence 22333445556677777777776653 3343 367888888888887666554
No 55
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.38 E-value=0.0016 Score=37.07 Aligned_cols=22 Identities=36% Similarity=0.696 Sum_probs=14.9
Q ss_pred ccceeeecCCCCcccchhhhcC
Q 044550 431 HLKYLNLSELRIERIPETLCEL 452 (662)
Q Consensus 431 ~Lr~L~L~~~~i~~lp~~i~~L 452 (662)
+|++|+|++|.++.+|+++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4677777777777777766543
No 56
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.15 E-value=0.0096 Score=57.86 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=61.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHH-HhhhccCcHHHHHHHHHHHhccccccccchhhhhhhhhccccccccCcccccccc
Q 044550 5 TGVDEEVKKLTINLEAIRAVLEDA-KKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAPHKKKVRSFFCAVSN 83 (662)
Q Consensus 5 ~~v~~~~~~l~~~L~~i~a~L~~a-~~~~~~~~~~~~~Wl~~vr~~ayd~eD~~~lD~~~~~~~~~~~~~~~~~~~~~~~ 83 (662)
.-++.+++-++.|++++|.||+.. ++.+..++. ...++.++-+.||++|++ +|.+.......+
T Consensus 317 aflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYV--VDaCi~k~~P~W------------- 380 (402)
T PF12061_consen 317 AFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYV--VDACISKSVPHW------------- 380 (402)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeee--eehhhcCCCcHH-------------
Confidence 346889999999999999999986 664555355 999999999999999999 998843322111
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHH
Q 044550 84 CFGSFKQLSLRHHIAVKIREISEKLD 109 (662)
Q Consensus 84 ~~~~~~~~~~~~~~~~~i~~i~~~l~ 109 (662)
...++-..+..+|+.++++++
T Consensus 381 -----cl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 381 -----CLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhc
Confidence 112223567777888777764
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.08 E-value=0.0038 Score=59.61 Aligned_cols=69 Identities=22% Similarity=0.188 Sum_probs=39.8
Q ss_pred cccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-----ccccccCccEEEecCCC
Q 044550 556 QLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-----WLTSLTNLRELKLSLCV 628 (662)
Q Consensus 556 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-----~i~~l~~L~~L~L~~~~ 628 (662)
.+....+|+.+.+..++..|.+ ...-.+..+..+.+|+.|+|..|.++..-+ -+...++|..|.+.+|-
T Consensus 180 ~l~sh~~lk~vki~qNgIrpeg----v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEG----VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHhhcCceeEEeeecCcCcch----hHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 3444467788888777653321 122334455566788888888877654211 11133567777777775
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.48 E-value=0.0078 Score=57.51 Aligned_cols=102 Identities=25% Similarity=0.301 Sum_probs=56.9
Q ss_pred cCcccccccccccccCcccCCCCccceeeecCC--CCc-ccchhhhcCCCccEEeccCCCCCcc---CCccccccccccE
Q 044550 408 KLVFLRALRNWIREIPENVGKLIHLKYLNLSEL--RIE-RIPETLCELYNLQKLDIRGCQYLRG---LPAGIRKLMNMRS 481 (662)
Q Consensus 408 ~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~l~~~~~l~~---lP~~i~~L~~L~~ 481 (662)
.+..|.+.+..++.+ .++..|++|++|.++.| .+. .++...-++++|++|++++|+ ++. ++ .+.++.+|..
T Consensus 44 ~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~-pl~~l~nL~~ 120 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR-PLKELENLKS 120 (260)
T ss_pred chhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc-hhhhhcchhh
Confidence 333344443333333 23456778888888887 333 455555566888888888776 432 22 2456667777
Q ss_pred EecCCCccccccC----CcCCCCCCCCccCceeecC
Q 044550 482 LLNDGTYLLKYMP----IGISRLTSLRTLEKFVVGG 513 (662)
Q Consensus 482 L~l~~~~~~~~~p----~~i~~L~~L~~L~~~~~~~ 513 (662)
|++.+|.... +- ..+.-|++|..|+.+.+..
T Consensus 121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 7777775422 11 1134456666666554443
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.45 E-value=0.0069 Score=68.11 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=55.7
Q ss_pred hhcCcccccccc--cccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCC--ccccccccccE
Q 044550 406 FSKLVFLRALRN--WIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLP--AGIRKLMNMRS 481 (662)
Q Consensus 406 ~~~l~~Lrvl~~--~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~ 481 (662)
++.++.|.+.+- ...++..-..++++|+.||+|+++++.+ ..|++|+||++|-+++=. +..-+ ..+..|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCe
Confidence 555555655531 1222223345678899999999998888 789999999999888644 33222 25678899999
Q ss_pred EecCCCcc
Q 044550 482 LLNDGTYL 489 (662)
Q Consensus 482 L~l~~~~~ 489 (662)
||+|....
T Consensus 225 LDIS~~~~ 232 (699)
T KOG3665|consen 225 LDISRDKN 232 (699)
T ss_pred eecccccc
Confidence 99987644
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.03 E-value=0.021 Score=52.38 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=45.7
Q ss_pred CccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccc-ccccccEEecCCCccccccC--CcCCCCCCCCcc
Q 044550 430 IHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIR-KLMNMRSLLNDGTYLLKYMP--IGISRLTSLRTL 506 (662)
Q Consensus 430 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~-~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L 506 (662)
-+...++|++|.+..++ .+..+..|.+|.+.+|. +..+-..+. .+++|..|.+.+|.+ ..+. ..+..++.|+.|
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcch-hhhhhcchhccCCcccee
Confidence 34556778888776664 36677788888888777 555544454 345688888877754 2221 123344555555
Q ss_pred C
Q 044550 507 E 507 (662)
Q Consensus 507 ~ 507 (662)
.
T Consensus 119 t 119 (233)
T KOG1644|consen 119 T 119 (233)
T ss_pred e
Confidence 4
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.67 E-value=0.021 Score=54.68 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=54.7
Q ss_pred CCccceeeecCCCCcccchhhhcCCCccEEeccCC--CCCccCCccccccccccEEecCCCccccccCCc---CCCCCCC
Q 044550 429 LIHLKYLNLSELRIERIPETLCELYNLQKLDIRGC--QYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIG---ISRLTSL 503 (662)
Q Consensus 429 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~--~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~---i~~L~~L 503 (662)
+..|.+|++.++.++.+ ..+-.|++|++|+++.| .....++.-+.++++|++|++++|.+ + .+.. +..+.+|
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~-~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-K-DLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-c-cccccchhhhhcch
Confidence 45566666666665544 23456889999999998 54456666667789999999999975 2 2333 3455566
Q ss_pred CccCceeec
Q 044550 504 RTLEKFVVG 512 (662)
Q Consensus 504 ~~L~~~~~~ 512 (662)
..|+++.+.
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 666655443
No 62
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.67 E-value=0.0023 Score=69.18 Aligned_cols=99 Identities=19% Similarity=0.182 Sum_probs=71.2
Q ss_pred CccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCce
Q 044550 430 IHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKF 509 (662)
Q Consensus 430 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 509 (662)
..|...+.++|.+..+-.++.-|+.|+.|||++|+ +...- .+..+++|+||+++.|.. ..+|..-..=..|+.|.+.
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccchh-ccccccchhhhhheeeeec
Confidence 45778889999999888899999999999999998 66664 688999999999999975 6777432111237777532
Q ss_pred eecCccCCCCccCccccccCcccCccccc
Q 044550 510 VVGGGVDGGGTCRLESLKNLQLLRKCSIE 538 (662)
Q Consensus 510 ~~~~~~~~~~~~~l~~L~~L~~L~~L~i~ 538 (662)
+|. -..+..+.+|++|+.|+++
T Consensus 241 --nN~-----l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 241 --NNA-----LTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred --ccH-----HHhhhhHHhhhhhhccchh
Confidence 222 2345556666666666554
No 63
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.59 E-value=0.18 Score=48.84 Aligned_cols=49 Identities=20% Similarity=0.097 Sum_probs=29.6
Q ss_pred CeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHH
Q 044550 214 NIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAK 265 (662)
Q Consensus 214 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~ 265 (662)
..+.+++|+.+++++++...+-.. ... +.-.+..++|...++|.|..|.
T Consensus 184 ~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 184 SHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp -EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHH
T ss_pred ceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 459999999999999998865322 111 1124455999999999998775
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.46 E-value=0.015 Score=33.01 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=11.2
Q ss_pred CccEEeccCCCCCccCCcccc
Q 044550 454 NLQKLDIRGCQYLRGLPAGIR 474 (662)
Q Consensus 454 ~L~~L~l~~~~~l~~lP~~i~ 474 (662)
+|++||+++|. ++.+|.+++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTT
T ss_pred CccEEECCCCc-CEeCChhhc
Confidence 35666666664 455555544
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.95 E-value=0.068 Score=49.21 Aligned_cols=91 Identities=27% Similarity=0.273 Sum_probs=60.8
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchhhhc-CCCccEEeccCCCCCccCCc--cccccccccEEecCCCccccc
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCE-LYNLQKLDIRGCQYLRGLPA--GIRKLMNMRSLLNDGTYLLKY 492 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~ 492 (662)
+|.+..+ ..+..++.|..|.|.+|.|+.+-+.+.. +++|++|.+.+|. ++++-+ .+..+++|++|.+-+|....
T Consensus 51 dNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv~~- 127 (233)
T KOG1644|consen 51 DNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPVEH- 127 (233)
T ss_pred ccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCchhc-
Confidence 3444444 3466788899999999999988666654 5569999999877 655532 35567888888887775321
Q ss_pred cC----CcCCCCCCCCccCce
Q 044550 493 MP----IGISRLTSLRTLEKF 509 (662)
Q Consensus 493 ~p----~~i~~L~~L~~L~~~ 509 (662)
.+ --+.++++|++|+..
T Consensus 128 k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 128 KKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ccCceeEEEEecCcceEeehh
Confidence 11 125667777777643
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.86 E-value=0.04 Score=29.02 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=6.1
Q ss_pred ccceeeecCCCCcccc
Q 044550 431 HLKYLNLSELRIERIP 446 (662)
Q Consensus 431 ~Lr~L~L~~~~i~~lp 446 (662)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=0.024 Score=55.14 Aligned_cols=203 Identities=18% Similarity=0.110 Sum_probs=96.1
Q ss_pred CccceeeecCCCCcccch--hhh-cCCCccEEeccCCCCCccC---CccccccccccEEecCCCccccccCCcCCCC---
Q 044550 430 IHLKYLNLSELRIERIPE--TLC-ELYNLQKLDIRGCQYLRGL---PAGIRKLMNMRSLLNDGTYLLKYMPIGISRL--- 500 (662)
Q Consensus 430 ~~Lr~L~L~~~~i~~lp~--~i~-~L~~L~~L~l~~~~~l~~l---P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L--- 500 (662)
.-+..|.+-++.|...-. .|+ ..+.++.|||.+|. +... -.-+.+|+.|+.|+++.|... +.|+.+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~----s~I~~lp~p 119 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLS----SDIKSLPLP 119 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCC----CccccCccc
Confidence 344466666776654322 222 46788999999987 4332 223468999999999988542 223333
Q ss_pred -CCCCccCceeecCcc-CCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCC
Q 044550 501 -TSLRTLEKFVVGGGV-DGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRR 578 (662)
Q Consensus 501 -~~L~~L~~~~~~~~~-~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 578 (662)
.+|++|- .++... .......+..++.++.|+ ++.+.+..+.--.++.+- . -+.+.+|+..-|..
T Consensus 120 ~~nl~~lV--LNgT~L~w~~~~s~l~~lP~vtelH-mS~N~~rq~n~Dd~c~e~----~--s~~v~tlh~~~c~~----- 185 (418)
T KOG2982|consen 120 LKNLRVLV--LNGTGLSWTQSTSSLDDLPKVTELH-MSDNSLRQLNLDDNCIED----W--STEVLTLHQLPCLE----- 185 (418)
T ss_pred ccceEEEE--EcCCCCChhhhhhhhhcchhhhhhh-hccchhhhhccccccccc----c--chhhhhhhcCCcHH-----
Confidence 4555552 111111 011122333333333332 111111000000000000 0 01122222221110
Q ss_pred CchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc--cccccCccEEEecCCCC--CCCCCCCCCcc-cceeecccccCcc
Q 044550 579 KNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW--LTSLTNLRELKLSLCVN--CEHLPPLGKLP-LEKLQLKNLKSVK 653 (662)
Q Consensus 579 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~--i~~l~~L~~L~L~~~~~--~~~lp~l~~Lp-L~~l~l~~l~~L~ 653 (662)
..-........-+|++..+.+..++....... ...++.+.-|.|+.++. +.++..+..+| +.-|++.+-+-.+
T Consensus 186 --~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 186 --QLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred --HHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 11112222234468888888888865543322 22566677778877752 23444456666 6666665554443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=0.0063 Score=58.38 Aligned_cols=79 Identities=23% Similarity=0.256 Sum_probs=48.6
Q ss_pred CCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCc--cccccccccEEecCCCccccccCCc-----CCC
Q 044550 427 GKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPA--GIRKLMNMRSLLNDGTYLLKYMPIG-----ISR 499 (662)
Q Consensus 427 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~p~~-----i~~ 499 (662)
.+|+.|+.|.|+-|.|+.| ..+..+++|+.|.|+.|. +..+-. -+.+|++|+.|-+..|.....-+.. +.-
T Consensus 38 ~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 3577777777777777776 446777777777777665 444422 2456677777777666543333322 445
Q ss_pred CCCCCccC
Q 044550 500 LTSLRTLE 507 (662)
Q Consensus 500 L~~L~~L~ 507 (662)
|++|+.|+
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 66677666
No 69
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.35 E-value=0.48 Score=48.33 Aligned_cols=72 Identities=19% Similarity=0.099 Sum_probs=47.8
Q ss_pred CceEEEEcccHHHHhhhC--CCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHH
Q 044550 194 GSKIFVTTRNESVARMMG--STNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGN 269 (662)
Q Consensus 194 gSrIivTTR~~~v~~~~~--~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~ 269 (662)
.+-|.+||+...+...+. ....+.+++++.++..+++.+.+-.... .. -.+....|++.|+|.|-.+..++.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~---~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EI---EPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-Cc---CHHHHHHHHHHhCCCcchHHHHHH
Confidence 445566777654443321 1347899999999999999988753221 11 135668899999999976654443
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.35 E-value=0.088 Score=27.72 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=9.0
Q ss_pred CCccEEeccCCCCCccCC
Q 044550 453 YNLQKLDIRGCQYLRGLP 470 (662)
Q Consensus 453 ~~L~~L~l~~~~~l~~lP 470 (662)
++|++|++++|+ ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 367777777777 66655
No 71
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.16 E-value=0.91 Score=46.82 Aligned_cols=71 Identities=23% Similarity=0.110 Sum_probs=47.3
Q ss_pred ceEEEEcccHHHHhhhC--CCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHH
Q 044550 195 SKIFVTTRNESVARMMG--STNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGN 269 (662)
Q Consensus 195 SrIivTTR~~~v~~~~~--~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~ 269 (662)
+-|..||+...+...+. ....+++.+++.++..+++.+.+-..+. .. -.+....|++.|+|.|-.+..+..
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~---~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EI---DEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHHcCCCchHHHHHHH
Confidence 44666777554443321 1347899999999999999988754322 11 235688999999999965554443
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.10 E-value=0.24 Score=29.32 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=13.4
Q ss_pred CCccceeeecCCCCcccchhh
Q 044550 429 LIHLKYLNLSELRIERIPETL 449 (662)
Q Consensus 429 l~~Lr~L~L~~~~i~~lp~~i 449 (662)
|.+|++|+|++|.++.+|+.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 355667777777766666643
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.10 E-value=0.24 Score=29.32 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=13.4
Q ss_pred CCccceeeecCCCCcccchhh
Q 044550 429 LIHLKYLNLSELRIERIPETL 449 (662)
Q Consensus 429 l~~Lr~L~L~~~~i~~lp~~i 449 (662)
|.+|++|+|++|.++.+|+.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 355667777777766666643
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=0.023 Score=54.74 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=57.7
Q ss_pred CCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC--CcCCCCCCCCcc
Q 044550 429 LIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP--IGISRLTSLRTL 506 (662)
Q Consensus 429 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L 506 (662)
+.+.+.|+..||.++.+ .-+.++..|++|.|+-|+ +..|-. +..+++|+.|+|..|.+ ..+- .-+.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhH
Confidence 56677889999998866 446689999999999988 777743 78899999999998854 2222 125677888888
Q ss_pred Cc
Q 044550 507 EK 508 (662)
Q Consensus 507 ~~ 508 (662)
-+
T Consensus 94 WL 95 (388)
T KOG2123|consen 94 WL 95 (388)
T ss_pred hh
Confidence 54
No 75
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.81 E-value=2.6 Score=50.24 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=82.2
Q ss_pred CCCceEEEEcccHHHH---hhhCCCCeeeCC----CCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhH
Q 044550 192 LHGSKIFVTTRNESVA---RMMGSTNIISIK----QLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAA 264 (662)
Q Consensus 192 ~~gSrIivTTR~~~v~---~~~~~~~~~~l~----~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai 264 (662)
..+-++|||||...-. ..........+. +++.+|+.++|....-. . --.+...++.+.|+|.|+++
T Consensus 150 ~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~------~~~~~~~~l~~~t~Gwp~~l 222 (903)
T PRK04841 150 PENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-P------IEAAESSRLCDDVEGWATAL 222 (903)
T ss_pred CCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-C------CCHHHHHHHHHHhCChHHHH
Confidence 4556788999974211 111112345555 89999999999765421 1 11345688999999999999
Q ss_pred HHHHHhhcCCCC-HH--HH----------HHHHhhh-hhhhhh------hhcCcccCCCCchH-----HHHHHHHHHHHH
Q 044550 265 KVIGNLLRSKST-VK--EW----------QRILESE-MWKVLE------IGQGYLNAKEDEEM-----EMIGEECFNILA 319 (662)
Q Consensus 265 ~~ig~~L~~~~~-~~--~w----------~~~l~~~-~~~~~~------iaeg~i~~~~~~~~-----~~~~~~~~~~L~ 319 (662)
..++..+..... .. .| ...+... ...++. ..-..+..-..... .+-+...+++|.
T Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~ 302 (903)
T PRK04841 223 QLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELE 302 (903)
T ss_pred HHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHH
Confidence 988877654321 11 11 0111111 111111 00011111000000 112356788999
Q ss_pred hcCcccccccCCCCCeeeEEcChHHHHHHHHhh
Q 044550 320 ARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVS 352 (662)
Q Consensus 320 ~rsli~~~~~~~~~~~~~~~mHdll~dl~~~i~ 352 (662)
..++|..... +....|+.|++++++.....
T Consensus 303 ~~~l~~~~~~---~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 303 RQGLFIQRMD---DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HCCCeeEeec---CCCCEEehhHHHHHHHHHHH
Confidence 9998643221 11236888999999988764
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.41 E-value=0.038 Score=51.78 Aligned_cols=76 Identities=17% Similarity=0.110 Sum_probs=52.5
Q ss_pred cccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCc
Q 044550 412 LRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTY 488 (662)
Q Consensus 412 Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 488 (662)
|..+++.+..+-..+..+..|..|+++.+.+..+|+.++.+..+..+++..|. ...+|.+.++++++++++..++.
T Consensus 47 ld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 47 LDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred ehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhhccCc
Confidence 33334555555566666677777777777777777777777777777777665 67777777777777777776664
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.18 E-value=0.32 Score=46.95 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=23.1
Q ss_pred cccCCCCccceeeecCCCCc-ccch----hhhcCCCccEEeccCCC
Q 044550 424 ENVGKLIHLKYLNLSELRIE-RIPE----TLCELYNLQKLDIRGCQ 464 (662)
Q Consensus 424 ~~i~~l~~Lr~L~L~~~~i~-~lp~----~i~~L~~L~~L~l~~~~ 464 (662)
+.+-++++|+..+||.|.+. ..|+ -|++-++|.+|.+++|.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 34455666777777766644 2222 34555566666666554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.64 E-value=0.044 Score=51.38 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=25.1
Q ss_pred ccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCC
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQ 464 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~ 464 (662)
+.+..+|+.++.+..++.+++..|+.+.+|.+.+++++++++++.++.
T Consensus 75 nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 75 NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 344445555555555555555555555555555555555555555544
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.96 E-value=0.87 Score=26.84 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=13.7
Q ss_pred CCCccEEeccCCCCCccCCccc
Q 044550 452 LYNLQKLDIRGCQYLRGLPAGI 473 (662)
Q Consensus 452 L~~L~~L~l~~~~~l~~lP~~i 473 (662)
|.+|++|++.+|. +..+|.++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4567777777776 66666643
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.96 E-value=0.87 Score=26.84 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=13.7
Q ss_pred CCCccEEeccCCCCCccCCccc
Q 044550 452 LYNLQKLDIRGCQYLRGLPAGI 473 (662)
Q Consensus 452 L~~L~~L~l~~~~~l~~lP~~i 473 (662)
|.+|++|++.+|. +..+|.++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4567777777776 66666643
No 81
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=83.80 E-value=8.1 Score=40.92 Aligned_cols=39 Identities=15% Similarity=0.025 Sum_probs=28.1
Q ss_pred cCCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 141 DEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 141 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
.++.++||+++.++|...+...-. ......+-|+|+.|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~Gt 66 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGT 66 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCC
Confidence 456799999999999999854321 113344568999998
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.88 E-value=0.25 Score=53.91 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCccceeeecCCC-Ccc--cchhhhcCCCccEEeccC
Q 044550 429 LIHLKYLNLSELR-IER--IPETLCELYNLQKLDIRG 462 (662)
Q Consensus 429 l~~Lr~L~L~~~~-i~~--lp~~i~~L~~L~~L~l~~ 462 (662)
++.|+.|.+.++. +.. +-+....+.+|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 5666666666663 333 334556677777777776
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=81.82 E-value=0.14 Score=52.36 Aligned_cols=86 Identities=23% Similarity=0.196 Sum_probs=48.6
Q ss_pred ccccCCcEEEEecCCCCCCCCchhHHHHhhhCC-CCCCCcEEEEeecCCCC-C-Ccccc-cccCccEEEecCCCCCCC--
Q 044550 559 NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQ-PPLNVEELEIESYRGNI-F-PKWLT-SLTNLRELKLSLCVNCEH-- 632 (662)
Q Consensus 559 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~-l-P~~i~-~l~~L~~L~L~~~~~~~~-- 632 (662)
.+..|+.|..+.+.. ....++..+. ...+|+.|.+.++.... . -..++ +.+.|+.+++..|.....
T Consensus 292 ~c~~lq~l~~s~~t~--------~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTD--------ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred hhhHhhhhcccCCCC--------CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh
Confidence 456667776665543 2233444443 45889999999886311 0 01122 678899999998874421
Q ss_pred CCCC-CCcc-cceeecccccCc
Q 044550 633 LPPL-GKLP-LEKLQLKNLKSV 652 (662)
Q Consensus 633 lp~l-~~Lp-L~~l~l~~l~~L 652 (662)
+-.+ ..=| |+.+.+..|+..
T Consensus 364 L~sls~~C~~lr~lslshce~i 385 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELI 385 (483)
T ss_pred HhhhccCCchhccCChhhhhhh
Confidence 2211 2335 666666655543
No 84
>PRK06893 DNA replication initiation factor; Validated
Probab=80.99 E-value=5.6 Score=38.53 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=42.9
Q ss_pred HHHHhhhCCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHH
Q 044550 204 ESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAK 265 (662)
Q Consensus 204 ~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~ 265 (662)
+++...+....+++++++++++.++++.++++..+- ..+ +++..-|++++.|-.-++.
T Consensus 144 ~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 144 PDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI-ELS---DEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred hhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhccCCHHHHH
Confidence 477777777789999999999999999999974432 122 4666778888876554443
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.66 E-value=6.6 Score=33.69 Aligned_cols=58 Identities=12% Similarity=0.251 Sum_probs=25.3
Q ss_pred cCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCC
Q 044550 426 VGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDG 486 (662)
Q Consensus 426 i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~ 486 (662)
+..+..|+.+.+..+ +..++. .+.++.+|+.+.+.+ . +..++. .+..+++|+.+.+..
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TTECEEEETT
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-c-ccccccccccccccccccccCc
Confidence 344556666666553 554443 344555566666654 2 333333 233455666666544
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.45 E-value=2.4 Score=25.05 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=10.6
Q ss_pred ccceeeecCCCCcccch
Q 044550 431 HLKYLNLSELRIERIPE 447 (662)
Q Consensus 431 ~Lr~L~L~~~~i~~lp~ 447 (662)
+|++|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666664
No 87
>PRK13342 recombination factor protein RarA; Reviewed
Probab=70.55 E-value=20 Score=38.35 Aligned_cols=54 Identities=20% Similarity=0.110 Sum_probs=36.9
Q ss_pred CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHH
Q 044550 213 TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVI 267 (662)
Q Consensus 213 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~i 267 (662)
...+.+.+++.++.++++.+.+-.... ....--.+..+.|++.|+|-|..+..+
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 368999999999999999886532111 000122456778899999998766543
No 88
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=68.81 E-value=46 Score=33.91 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=46.1
Q ss_pred hhhcCCCCceEEEEcccHHHH-hhhC-CCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhH
Q 044550 187 RLKNGLHGSKIFVTTRNESVA-RMMG-STNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAA 264 (662)
Q Consensus 187 ~l~~~~~gSrIivTTR~~~v~-~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai 264 (662)
.+..-..++.+|++|.+.+.. .... -...+++.++++++....+.+.. ... -.+..+.++..|+|.|..+
T Consensus 116 ~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~-~~~-------~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 116 TIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY-NDI-------KEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred HhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-cCC-------CHHHHHHHHHHcCCCHHHH
Confidence 344445688888888765422 2111 24689999999999877665432 211 1234678899999998755
Q ss_pred HH
Q 044550 265 KV 266 (662)
Q Consensus 265 ~~ 266 (662)
..
T Consensus 188 ~~ 189 (313)
T PRK05564 188 EK 189 (313)
T ss_pred HH
Confidence 43
No 89
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=65.59 E-value=4.1 Score=37.64 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=21.1
Q ss_pred ceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 144 EVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 144 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
++|||+++.+++...|.. .. ....+++-|+|..|+
T Consensus 1 ~fvgR~~e~~~l~~~l~~-~~--~~~~~~~ll~G~~G~ 35 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDA-AQ--SGSPRNLLLTGESGS 35 (185)
T ss_dssp --TT-HHHHHHHHHTTGG-TS--S-----EEE-B-TTS
T ss_pred CCCCHHHHHHHHHHHHHH-HH--cCCCcEEEEECCCCC
Confidence 479999999999999962 22 235689999999999
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.13 E-value=2.2 Score=39.65 Aligned_cols=66 Identities=23% Similarity=0.147 Sum_probs=39.4
Q ss_pred hccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCC-CCCCCcEEEEeecCCCC-C-CcccccccCccEEEecCC
Q 044550 554 RLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQ-PPLNVEELEIESYRGNI-F-PKWLTSLTNLRELKLSLC 627 (662)
Q Consensus 554 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~-l-P~~i~~l~~L~~L~L~~~ 627 (662)
...|.+++.+++|.+..|.. -+...++.+. +.++|+.|+|++|+-.+ . -.|+..++||+.|.|.+-
T Consensus 118 le~L~~l~~i~~l~l~~ck~--------~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKY--------FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHhccchhhhheeccccc--------hhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 34456667777777776653 2233344443 34788888888876221 0 125567788888877754
No 91
>PF05729 NACHT: NACHT domain
Probab=65.00 E-value=11 Score=33.98 Aligned_cols=42 Identities=19% Similarity=0.421 Sum_probs=32.8
Q ss_pred CCCceEEEEcccHHH---HhhhCCCCeeeCCCCChHHHHHHHHHH
Q 044550 192 LHGSKIFVTTRNESV---ARMMGSTNIISIKQLAEEECWSLFKQL 233 (662)
Q Consensus 192 ~~gSrIivTTR~~~v---~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 233 (662)
.++.+||||+|.... .........+++.++++++..+++.+.
T Consensus 118 ~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 118 PPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred CCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 467899999998766 333444568999999999999988664
No 92
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=63.08 E-value=20 Score=35.47 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=42.9
Q ss_pred CeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhh
Q 044550 214 NIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLL 271 (662)
Q Consensus 214 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L 271 (662)
..+.+.+++.+|..+++...+-..+......--.+..+.|++.|+|.|..|..++..+
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 4688999999999998887764322111111224778999999999999998888765
No 93
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=62.24 E-value=6.4 Score=40.77 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=18.1
Q ss_pred cCCCccEEeccCCCCCccCCc-c-ccccccccEEecCCCc
Q 044550 451 ELYNLQKLDIRGCQYLRGLPA-G-IRKLMNMRSLLNDGTY 488 (662)
Q Consensus 451 ~L~~L~~L~l~~~~~l~~lP~-~-i~~L~~L~~L~l~~~~ 488 (662)
.+..||.|+.++|..+...+- . ..+..+|+.|-+++|.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 345566666666554322111 0 1233556666666664
No 94
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=60.96 E-value=18 Score=30.97 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=43.1
Q ss_pred ccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCC-cCCCCC
Q 044550 425 NVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPI-GISRLT 501 (662)
Q Consensus 425 ~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~ 501 (662)
.+.++.+|+.+.+.. .+..+++ .+.++.+|+.+.+.++ +..++. .+..+++|+.+.+..+ ...++. .+...+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccc--ccccccccccccc
Confidence 355677888888875 4677755 5777878999999873 666655 4566768999988653 234443 355566
Q ss_pred CCCccC
Q 044550 502 SLRTLE 507 (662)
Q Consensus 502 ~L~~L~ 507 (662)
+|+.+.
T Consensus 82 ~l~~i~ 87 (129)
T PF13306_consen 82 NLKNID 87 (129)
T ss_dssp TECEEE
T ss_pred cccccc
Confidence 776664
No 95
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.29 E-value=7.2 Score=23.14 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=8.2
Q ss_pred CccceeeecCCCCcc
Q 044550 430 IHLKYLNLSELRIER 444 (662)
Q Consensus 430 ~~Lr~L~L~~~~i~~ 444 (662)
.+|++|+|++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455566666655543
No 96
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=57.86 E-value=2.5 Score=45.99 Aligned_cols=139 Identities=24% Similarity=0.213 Sum_probs=77.4
Q ss_pred cCCCccEEeccCCCCCcc--CCccccccccccEEecCCC-ccccccC----CcCCCCCCCCccCceeecCccCCCCccCc
Q 044550 451 ELYNLQKLDIRGCQYLRG--LPAGIRKLMNMRSLLNDGT-YLLKYMP----IGISRLTSLRTLEKFVVGGGVDGGGTCRL 523 (662)
Q Consensus 451 ~L~~L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~-~~~~~~p----~~i~~L~~L~~L~~~~~~~~~~~~~~~~l 523 (662)
.+++|+.|.+.+|..+.. +-......++|+.|++++| ......+ .....+.+|+.|++.....-. ...+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is----d~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT----DIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC----chhH
Confidence 478999999999876665 3345678899999999873 2212111 123345677777755443211 2222
Q ss_pred ccccc-CcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEe
Q 044550 524 ESLKN-LQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIE 602 (662)
Q Consensus 524 ~~L~~-L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 602 (662)
..+.. ..+|+.|.+..+ ..+. .+........+++|++|+++++..+ .+.........+++|+.|.+.
T Consensus 262 ~~l~~~c~~L~~L~l~~c---~~lt--~~gl~~i~~~~~~L~~L~l~~c~~~-------~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNC---SNLT--DEGLVSIAERCPSLRELDLSGCHGL-------TDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHHhhCCCcceEccCCC---Cccc--hhHHHHHHHhcCcccEEeeecCccc-------hHHHHHHHHHhCcchhhhhhh
Confidence 22221 334444444444 2111 1233334456778999999988652 222222334446777777665
Q ss_pred ecC
Q 044550 603 SYR 605 (662)
Q Consensus 603 ~~~ 605 (662)
...
T Consensus 330 ~~~ 332 (482)
T KOG1947|consen 330 SLN 332 (482)
T ss_pred hcC
Confidence 554
No 97
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.93 E-value=1.7 Score=40.30 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=35.1
Q ss_pred CccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCC-cccc-ccccccEEecCCCcc
Q 044550 430 IHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLP-AGIR-KLMNMRSLLNDGTYL 489 (662)
Q Consensus 430 ~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP-~~i~-~L~~L~~L~l~~~~~ 489 (662)
..++.++-+++.|... -+.+.++..++.|.+.+|+.+...- ..++ -.++|+.|++++|..
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r 163 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR 163 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe
Confidence 3466777777776532 2456677777778888777543210 0111 245677777776643
No 98
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.79 E-value=6.2 Score=22.56 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=6.1
Q ss_pred CccceeeecCCCCc
Q 044550 430 IHLKYLNLSELRIE 443 (662)
Q Consensus 430 ~~Lr~L~L~~~~i~ 443 (662)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555543
No 99
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=54.86 E-value=36 Score=30.27 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHhccccccccchhhhhh
Q 044550 6 GVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDN 63 (662)
Q Consensus 6 ~v~~~~~~l~~~L~~i~a~L~~a~~~~~~~~~~~~~Wl~~vr~~ayd~eD~~~lD~~~ 63 (662)
.++.-++.|..++++|..++.+.+..+...|..-+.-++++.+..-+++++ +..|.
T Consensus 31 ~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L--V~k~s 86 (147)
T PF05659_consen 31 SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL--VEKCS 86 (147)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH--HHHhc
Confidence 345667889999999999999998865443444477888888888888888 77663
No 100
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=52.54 E-value=1.3e+02 Score=30.04 Aligned_cols=64 Identities=27% Similarity=0.185 Sum_probs=43.6
Q ss_pred EEEEcccHHHHhhhCC--CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhH
Q 044550 197 IFVTTRNESVARMMGS--TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAA 264 (662)
Q Consensus 197 IivTTR~~~v~~~~~~--~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai 264 (662)
|=.|||.-.+.+-+.. ..+.+++.-+.+|-.+...+.|-.-+- +--++-+.+|+++.+|-|--.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHH
Confidence 3468886655554332 457889999999988888887732111 112466889999999999533
No 101
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=48.02 E-value=15 Score=21.54 Aligned_cols=14 Identities=43% Similarity=0.909 Sum_probs=7.8
Q ss_pred CCccEEeccCCCCC
Q 044550 453 YNLQKLDIRGCQYL 466 (662)
Q Consensus 453 ~~L~~L~l~~~~~l 466 (662)
++|+.|+|++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 45566666666533
No 102
>PTZ00202 tuzin; Provisional
Probab=47.81 E-value=30 Score=36.81 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=31.8
Q ss_pred ccccCCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 138 SLIDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 138 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
.+.+...++||+++...+...|...+. ...+++.|.|+.|.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~ 297 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGC 297 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCC
Confidence 334567899999999999999975433 14569999999996
No 103
>COG3899 Predicted ATPase [General function prediction only]
Probab=45.99 E-value=85 Score=36.99 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=44.0
Q ss_pred CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 044550 213 TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSK 274 (662)
Q Consensus 213 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~ 274 (662)
-..+.+.||+..+.-.|-.... +.. .....+..+.|++|.+|.|+-+.-+-..+...
T Consensus 211 i~~I~L~PL~~~d~~~lV~~~l-~~~----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 211 ITTITLAPLSRADTNQLVAATL-GCT----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred eeEEecCcCchhhHHHHHHHHh-CCc----ccccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 3689999999999999887754 221 23345678999999999999998877777663
No 104
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=45.24 E-value=55 Score=34.22 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=40.6
Q ss_pred CceEEEEcccHHHHhh-----hCCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCc
Q 044550 194 GSKIFVTTRNESVARM-----MGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLP 261 (662)
Q Consensus 194 gSrIivTTR~~~v~~~-----~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlP 261 (662)
+.+||.||...+.... ...+..+.+...+.++.+++|..++.+... ...-. -..+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 5678888875433221 122568999999999999999988754332 11122 356677777764
No 105
>PRK09087 hypothetical protein; Validated
Probab=43.71 E-value=1.2e+02 Score=29.34 Aligned_cols=68 Identities=10% Similarity=0.100 Sum_probs=47.7
Q ss_pred CceEEEEcc---------cHHHHhhhCCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhH
Q 044550 194 GSKIFVTTR---------NESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAA 264 (662)
Q Consensus 194 gSrIivTTR---------~~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai 264 (662)
|..||+|++ .+++...+....+++++++++++-.+++.+++-.. ....+ +++..-|++.+.|-.-++
T Consensus 117 g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~-~~~l~---~ev~~~La~~~~r~~~~l 192 (226)
T PRK09087 117 GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR-QLYVD---PHVVYYLVSRMERSLFAA 192 (226)
T ss_pred CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHhhhhHHHH
Confidence 456888876 34555556667899999999999999999887432 11122 466777888887766555
Q ss_pred H
Q 044550 265 K 265 (662)
Q Consensus 265 ~ 265 (662)
.
T Consensus 193 ~ 193 (226)
T PRK09087 193 Q 193 (226)
T ss_pred H
Confidence 4
No 106
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=42.88 E-value=18 Score=21.77 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=9.1
Q ss_pred CccceeeecCCCCc
Q 044550 430 IHLKYLNLSELRIE 443 (662)
Q Consensus 430 ~~Lr~L~L~~~~i~ 443 (662)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777654
No 107
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=41.77 E-value=78 Score=33.08 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=33.7
Q ss_pred hhhhcCCCCceEEE--EcccHHHH--hh-hCCCCeeeCCCCChHHHHHHHHHH
Q 044550 186 LRLKNGLHGSKIFV--TTRNESVA--RM-MGSTNIISIKQLAEEECWSLFKQL 233 (662)
Q Consensus 186 ~~l~~~~~gSrIiv--TTR~~~v~--~~-~~~~~~~~l~~L~~~~s~~Lf~~~ 233 (662)
..||.-..|.-|+| ||-|+... .. ..-..+|.+++|+.+|-.++..+-
T Consensus 123 ~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 123 ALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred hhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 55666678877766 66665322 11 223579999999999999998883
No 108
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=40.24 E-value=2.2e+02 Score=29.80 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=62.3
Q ss_pred HHHHHHHHhccCccCCCCeEEEEEecCCCc-----ccchhhhhcCCCCceEEEEcccH-HHHhhhCC-CCeeeCCCCChH
Q 044550 152 KNELLSKLLCESSEQQKGLHVISLVGLGGI-----EPFFLRLKNGLHGSKIFVTTRNE-SVARMMGS-TNIISIKQLAEE 224 (662)
Q Consensus 152 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----~~F~~~l~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~ 224 (662)
+.++.+.+..... ....+||-|-..--+ +.+-..+..-..+..+|++|.+. .+...... ...+.+.+++.+
T Consensus 126 iR~l~~~~~~~~~--~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~ 203 (365)
T PRK07471 126 VRELISFFGLTAA--EGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPE 203 (365)
T ss_pred HHHHHHHhCcCcc--cCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHH
Confidence 4555665554332 346677777654332 11113333333456677777765 33333222 568999999999
Q ss_pred HHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHH
Q 044550 225 ECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVI 267 (662)
Q Consensus 225 ~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~i 267 (662)
+..+.+..... . . . .+....+++.++|.|..+..+
T Consensus 204 ~i~~~L~~~~~---~--~-~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 204 DVIDALAAAGP---D--L-P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHHHHHHhcc---c--C-C--HHHHHHHHHHcCCCHHHHHHH
Confidence 99999877531 1 1 1 122267899999999866544
No 109
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=36.82 E-value=2.2e+02 Score=29.30 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=63.0
Q ss_pred HHHHHHHHhccCccCCCCeEEEEEecCCCc-----ccchhhhhcCCCCceEEEEcccH-HHHhhhCC-CCeeeCCCCChH
Q 044550 152 KNELLSKLLCESSEQQKGLHVISLVGLGGI-----EPFFLRLKNGLHGSKIFVTTRNE-SVARMMGS-TNIISIKQLAEE 224 (662)
Q Consensus 152 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----~~F~~~l~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~ 224 (662)
+.++++.+..... ....+|+-|-..-.+ +.+-..+..-..++.+|+||.+. .+.....+ ...+.+.+++.+
T Consensus 91 iR~l~~~~~~~~~--~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~ 168 (328)
T PRK05707 91 VRELVSFVVQTAQ--LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNE 168 (328)
T ss_pred HHHHHHHHhhccc--cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHH
Confidence 3445666554332 236778766555444 11223333334567777777765 44433222 568999999999
Q ss_pred HHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHH
Q 044550 225 ECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVI 267 (662)
Q Consensus 225 ~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~i 267 (662)
++.+.+.... +.. -.+-+..++..++|-|..+..+
T Consensus 169 ~~~~~L~~~~-~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 169 ESLQWLQQAL-PES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHHhc-ccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 9988887643 111 1233567789999999766544
No 110
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=36.70 E-value=27 Score=36.45 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=28.9
Q ss_pred cCCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 141 DEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 141 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
.++.++||+++.++|..+|..... ......+-|+|+.|+
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~Gt 51 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGT 51 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCC
Confidence 345799999999999999875221 113346789999998
No 111
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=36.06 E-value=70 Score=30.73 Aligned_cols=66 Identities=26% Similarity=0.241 Sum_probs=42.0
Q ss_pred ceEEEEcccHHHHhhhCC--CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhH
Q 044550 195 SKIFVTTRNESVARMMGS--TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAA 264 (662)
Q Consensus 195 SrIivTTR~~~v~~~~~~--~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai 264 (662)
+-|=.|||...+..-+.. ..+.+++..+.+|-.+...+.|-.-+ .+--++.+.+|+++|.|-|--+
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHH
Confidence 345678887666554443 34678999999999998887663221 1233577899999999999544
No 112
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=34.23 E-value=7e+02 Score=29.16 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=85.1
Q ss_pred hhcCCCCceEEEEcccHH---HHhhhCCCCeeeCC----CCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCC
Q 044550 188 LKNGLHGSKIFVTTRNES---VARMMGSTNIISIK----QLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGL 260 (662)
Q Consensus 188 l~~~~~gSrIivTTR~~~---v~~~~~~~~~~~l~----~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~Gl 260 (662)
+....++=..|||||..- +++.--.+...++. .++.+|+-++|..... . +--+.-.+.+.+...|=
T Consensus 154 l~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l----~Ld~~~~~~L~~~teGW 226 (894)
T COG2909 154 LKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---L----PLDAADLKALYDRTEGW 226 (894)
T ss_pred HHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---C----CCChHHHHHHHhhcccH
Confidence 445567788999999862 22221112344444 4889999999977541 1 11134467788888888
Q ss_pred chhHHHHHHhhcCCCCHHHHHHHHh---hhhhh---------hhh------hhcCcccCCCC-----chHHHHHHHHHHH
Q 044550 261 PLAAKVIGNLLRSKSTVKEWQRILE---SEMWK---------VLE------IGQGYLNAKED-----EEMEMIGEECFNI 317 (662)
Q Consensus 261 PLai~~ig~~L~~~~~~~~w~~~l~---~~~~~---------~~~------iaeg~i~~~~~-----~~~~~~~~~~~~~ 317 (662)
+-|+..++=.++...+.+.--..+. +.+++ ++. +..+.+..-.+ .+-++-+...+++
T Consensus 227 ~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~ 306 (894)
T COG2909 227 AAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEE 306 (894)
T ss_pred HHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHH
Confidence 8888888777773332222211111 11111 110 11111100000 0112234456788
Q ss_pred HHhcCcccccccCCCCCeeeEEcChHHHHHHHHhhcc
Q 044550 318 LAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSK 354 (662)
Q Consensus 318 L~~rsli~~~~~~~~~~~~~~~mHdll~dl~~~i~~~ 354 (662)
|.++++|-..-+ +....|+.|.++.||-+.-...
T Consensus 307 L~~~gLFl~~Ld---d~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 307 LERRGLFLQRLD---DEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHhCCCceeeec---CCCceeehhHHHHHHHHhhhcc
Confidence 999997754322 2235799999999998765443
No 113
>COG3903 Predicted ATPase [General function prediction only]
Probab=33.46 E-value=56 Score=34.16 Aligned_cols=85 Identities=20% Similarity=0.159 Sum_probs=56.0
Q ss_pred hhhcCCCCceEEEEcccHHHHhhhCCCCeeeCCCCChH-HHHHHHHHHhhcCCCC-CCccchHHHHHHHHHHhcCCchhH
Q 044550 187 RLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEE-ECWSLFKQLAFFGRSF-EDREKLEPMGRKIARKCKGLPLAA 264 (662)
Q Consensus 187 ~l~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~~L~~~-~s~~Lf~~~af~~~~~-~~~~~~~~~~~~iv~~c~GlPLai 264 (662)
++-.+...-+|+.|+|..-. ...+..+.+.+|+.. ++-++|...+...... .....-.....+|.++..|.|++|
T Consensus 110 all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~lai 186 (414)
T COG3903 110 ALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAI 186 (414)
T ss_pred HHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHH
Confidence 34444455567777774322 233567888888875 7889998877432211 112233567889999999999999
Q ss_pred HHHHHhhcCC
Q 044550 265 KVIGNLLRSK 274 (662)
Q Consensus 265 ~~ig~~L~~~ 274 (662)
...+...+.-
T Consensus 187 elaaarv~sl 196 (414)
T COG3903 187 ELAAARVRSL 196 (414)
T ss_pred HHHHHHHHhc
Confidence 9888777655
No 114
>PF14162 YozD: YozD-like protein
Probab=33.23 E-value=46 Score=23.14 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHhcCcccccc
Q 044550 306 EMEMIGEECFNILAARSFFQEFK 328 (662)
Q Consensus 306 ~~~~~~~~~~~~L~~rsli~~~~ 328 (662)
..+++|+-+|.+|+.|+++....
T Consensus 9 DTEEIAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCcHH
Confidence 45889999999999999986543
No 115
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.23 E-value=1e+02 Score=27.71 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHhcccccccc
Q 044550 9 EEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDI 56 (662)
Q Consensus 9 ~~~~~l~~~L~~i~a~L~~a~~~~~~~~~~~~~Wl~~vr~~ayd~eD~ 56 (662)
+.+....++|..+|..|-+... .. .+.++.|+..+..|.-...++
T Consensus 49 ~~L~~ae~~Ln~vQ~~L~~l~d--~~-~d~~~~~l~km~kA~rgE~~~ 93 (169)
T PF09869_consen 49 KELKDAEKELNSVQSILFDLCD--EG-EDYRKKWLDKMKKASRGELVF 93 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cc-HHHHHHHHHHHHHHhccchhh
Confidence 5678889999999999988655 33 678999999999999888876
No 116
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=30.95 E-value=5e+02 Score=26.69 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=42.5
Q ss_pred CCceEEEEcccHH-HHhhhC-CCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHH
Q 044550 193 HGSKIFVTTRNES-VARMMG-STNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVI 267 (662)
Q Consensus 193 ~gSrIivTTR~~~-v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~i 267 (662)
....+|++|.+.+ +...+. ....++..++++++..+.+...+-..+. ..+ .+....+++.++|-|..+...
T Consensus 146 ~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 146 EHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred cceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCChHHHHHH
Confidence 4456666664443 333222 2357888899988887777776532221 111 356777888999988655443
No 117
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=29.70 E-value=3.6e+02 Score=27.13 Aligned_cols=47 Identities=15% Similarity=0.002 Sum_probs=31.3
Q ss_pred CeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhH
Q 044550 214 NIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAA 264 (662)
Q Consensus 214 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai 264 (662)
..+++.++++++....+.+.+-..+. .. -.+....+++.++|-+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~-~i---~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGI-EI---TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHH
Confidence 36888899999888877776643221 11 1345677888888876543
No 118
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=28.59 E-value=2.4e+02 Score=26.77 Aligned_cols=69 Identities=9% Similarity=0.093 Sum_probs=42.2
Q ss_pred ceEEEEcccH---------HHHhhhCCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHH
Q 044550 195 SKIFVTTRNE---------SVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAK 265 (662)
Q Consensus 195 SrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~ 265 (662)
.+||+||+.. ++...+.....+++.++++++-..++...+-... .... .+..+.+++.+.|-|..+.
T Consensus 124 ~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~---~~~l~~L~~~~~gn~r~L~ 199 (226)
T TIGR03420 124 GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLP---DEVADYLLRHGSRDMGSLM 199 (226)
T ss_pred CeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHhccCCHHHHH
Confidence 4688887742 2233333346899999999998888876543211 1111 3445667777777776665
Q ss_pred HH
Q 044550 266 VI 267 (662)
Q Consensus 266 ~i 267 (662)
.+
T Consensus 200 ~~ 201 (226)
T TIGR03420 200 AL 201 (226)
T ss_pred HH
Confidence 44
No 119
>PRK08727 hypothetical protein; Validated
Probab=27.74 E-value=1.8e+02 Score=28.12 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=44.6
Q ss_pred CceEEEEccc---------HHHHhhhCCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhH
Q 044550 194 GSKIFVTTRN---------ESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAA 264 (662)
Q Consensus 194 gSrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai 264 (662)
|..||+||+. +++...+.....+++++++.++-.+++.+++...+- ..+ .+...-+++.|.|-.-++
T Consensus 126 ~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 126 GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL-ALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhCCCCHHHH
Confidence 5568888873 334444444568999999999999999987764321 112 455677777787554333
No 120
>PRK04195 replication factor C large subunit; Provisional
Probab=27.38 E-value=2.1e+02 Score=31.21 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=28.6
Q ss_pred CceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 143 GEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 143 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
.+++|.++.++.+.+|+..-.. ....+.+-|+|+.|+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~ 50 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGV 50 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCC
Confidence 4689999999999999875332 113578889999998
No 121
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=24.02 E-value=5.2e+02 Score=27.32 Aligned_cols=105 Identities=10% Similarity=0.111 Sum_probs=63.0
Q ss_pred HHHHHHHHhccCccCCCCeEEEEEecCCCc-----ccchhhhhcCCCCceEEEEcccH-HHHhhhC-CCCeeeCCCCChH
Q 044550 152 KNELLSKLLCESSEQQKGLHVISLVGLGGI-----EPFFLRLKNGLHGSKIFVTTRNE-SVARMMG-STNIISIKQLAEE 224 (662)
Q Consensus 152 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----~~F~~~l~~~~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~ 224 (662)
+.++++.+..... ....+|+-|-..-.+ +.+-..+.....+..+|++|.+. .+...+. -...+.+.+++.+
T Consensus 102 iR~l~~~~~~~p~--~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~ 179 (394)
T PRK07940 102 VRELVTIAARRPS--TGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVE 179 (394)
T ss_pred HHHHHHHHHhCcc--cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHH
Confidence 4566666644332 236678877766555 11213333334566666666554 4443322 2568999999999
Q ss_pred HHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHH
Q 044550 225 ECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVI 267 (662)
Q Consensus 225 ~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~i 267 (662)
+..+.+.+.. . .. .+.+..++..++|-|.....+
T Consensus 180 ~i~~~L~~~~----~--~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 180 AVAEVLVRRD----G--VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHHHHHHHhc----C--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 9988886432 1 11 345678899999999755433
No 122
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=23.96 E-value=5.6e+02 Score=26.08 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=64.1
Q ss_pred hHHHHHHHHhccCccCCCCeEEEEEecCCCccc-----chhhhhcCCCCceEEEEc-ccHHHHhhhCC-CCeeeCCCCCh
Q 044550 151 EKNELLSKLLCESSEQQKGLHVISLVGLGGIEP-----FFLRLKNGLHGSKIFVTT-RNESVARMMGS-TNIISIKQLAE 223 (662)
Q Consensus 151 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi~~-----F~~~l~~~~~gSrIivTT-R~~~v~~~~~~-~~~~~l~~L~~ 223 (662)
+..+|.+.+....- ....+|+-|.+...+.. +-..+..-. ...+|++| .-..+.....+ ...+.+.++++
T Consensus 108 ~ir~i~~~l~~~p~--~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~ 184 (314)
T PRK07399 108 QIREIKRFLSRPPL--EAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSD 184 (314)
T ss_pred HHHHHHHHHccCcc--cCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCH
Confidence 45667777765443 34788999998766611 112222222 34555555 44444444333 57999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHH
Q 044550 224 EECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKV 266 (662)
Q Consensus 224 ~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ 266 (662)
++..+.+.+..... .....-..++..++|-|..+..
T Consensus 185 ~~~~~~L~~~~~~~-------~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 185 EQLEQVLKRLGDEE-------ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHHHHHhhccc-------cchhHHHHHHHHcCCCHHHHHH
Confidence 99999888764211 1111135789999999966543
No 123
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=23.86 E-value=3.8e+02 Score=31.04 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=30.6
Q ss_pred CCeeeCCCCChHHHHHHHHHHhhc------CCCCCCccchHHHHHHHHHHhcCCc
Q 044550 213 TNIISIKQLAEEECWSLFKQLAFF------GRSFEDREKLEPMGRKIARKCKGLP 261 (662)
Q Consensus 213 ~~~~~l~~L~~~~s~~Lf~~~af~------~~~~~~~~~~~~~~~~iv~~c~GlP 261 (662)
..++.+++|+.++...++.+.+-. ..... --.+....|++.+.|--
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~---I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVD---LEPEAEKHLVDVANGDA 211 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccC---CCHHHHHHHHHhCCCCH
Confidence 458999999999999998876531 11111 11355677888887753
No 124
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=23.82 E-value=2.9e+02 Score=28.25 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=62.6
Q ss_pred HHHHHHHHhccCccCCCCeEEEEEecCCCc-----ccchhhhhcCCCCceEEEEccc-HHHHhhhCC-CCeeeCCCCChH
Q 044550 152 KNELLSKLLCESSEQQKGLHVISLVGLGGI-----EPFFLRLKNGLHGSKIFVTTRN-ESVARMMGS-TNIISIKQLAEE 224 (662)
Q Consensus 152 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----~~F~~~l~~~~~gSrIivTTR~-~~v~~~~~~-~~~~~l~~L~~~ 224 (662)
+.++.+.+..... ....+|+-|...-.+ +.+-..+-.-..++.+|++|.+ ..+.....+ ...+.+.+++.+
T Consensus 98 IR~l~~~~~~~p~--~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~ 175 (319)
T PRK08769 98 VREISQKLALTPQ--YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAH 175 (319)
T ss_pred HHHHHHHHhhCcc--cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHH
Confidence 4455555544332 236788888766555 1111333333456667777664 445544333 568899999999
Q ss_pred HHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHH
Q 044550 225 ECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVI 267 (662)
Q Consensus 225 ~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~i 267 (662)
++.+.+.... . . ..-+..++..++|-|+.+..+
T Consensus 176 ~~~~~L~~~~---~---~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 176 EALAWLLAQG---V---S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHHHHHHcC---C---C----hHHHHHHHHHcCCCHHHHHHH
Confidence 9887776421 1 1 223567899999999876544
No 125
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.67 E-value=4.3e+02 Score=30.69 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=44.9
Q ss_pred CCCceEEEEcccH-HHHhhhC-CCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCc-hhHHHH
Q 044550 192 LHGSKIFVTTRNE-SVARMMG-STNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLP-LAAKVI 267 (662)
Q Consensus 192 ~~gSrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlP-Lai~~i 267 (662)
....++|+||.+. .|...+- -...+++++++.++..+.+.+.+-..+ ... -.+..+.|++.++|-. -|+..+
T Consensus 147 P~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~i---d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 147 PPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-IAF---EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred CCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3456777776654 3332221 246899999999999988877653222 111 1355678889998854 455543
No 126
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=23.13 E-value=63 Score=33.49 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=31.1
Q ss_pred CCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 142 EGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 142 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
+.+++|.++.++++++++...........+++.++|+.|.
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGs 89 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGG 89 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCC
Confidence 3479999999999999997644321335689999999996
No 127
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=22.04 E-value=4.5e+02 Score=31.18 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=28.1
Q ss_pred CCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 142 EGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 142 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
++.++|||++.++|...|...-.. ...-.++-|.|+.|.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGT 792 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGT 792 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCC
Confidence 467999999999999888653211 112356778999998
No 128
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=21.94 E-value=4.9e+02 Score=26.61 Aligned_cols=101 Identities=10% Similarity=0.092 Sum_probs=61.8
Q ss_pred HHHHHHHhccCccCCCCeEEEEEecCCCc-----ccchhhhhcCCCCceEEEEcccH-HHHhhhCC-CCeeeCCCCChHH
Q 044550 153 NELLSKLLCESSEQQKGLHVISLVGLGGI-----EPFFLRLKNGLHGSKIFVTTRNE-SVARMMGS-TNIISIKQLAEEE 225 (662)
Q Consensus 153 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----~~F~~~l~~~~~gSrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~ 225 (662)
.++.+.+..... ....+|+-|...--+ +.+-..+-.-..++.+|++|.+. .+.....+ ...+.+.++++++
T Consensus 94 R~l~~~~~~~~~--~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~ 171 (319)
T PRK06090 94 RQCNRLAQESSQ--LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQ 171 (319)
T ss_pred HHHHHHHhhCcc--cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHH
Confidence 345555544332 346788888766554 11223333334556666666554 55554433 5689999999999
Q ss_pred HHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHH
Q 044550 226 CWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVI 267 (662)
Q Consensus 226 s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~i 267 (662)
..+.+.... . . ....++..++|-|+.+..+
T Consensus 172 ~~~~L~~~~----~----~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 172 AMQWLKGQG----I----T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHHHHcC----C----c----hHHHHHHHcCCCHHHHHHH
Confidence 988775521 1 1 1356789999999877644
No 129
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=21.44 E-value=3.6e+02 Score=31.54 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=29.2
Q ss_pred CCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 142 EGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 142 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
+.+.+|.++.++.|+++|............++.++|+.|+
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~ 360 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGV 360 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCC
Confidence 4568999999999999987432111123457899999998
No 130
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=21.25 E-value=1.1e+02 Score=28.15 Aligned_cols=48 Identities=10% Similarity=0.305 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHhh-hccCcHHHHHHHHHHHhcccccccc
Q 044550 8 DEEVKKLTINLE------AIRAVLEDAKKR-QMQHDKAVTLWLDQLKDSSDDMEDI 56 (662)
Q Consensus 8 ~~~~~~l~~~L~------~i~a~L~~a~~~-~~~~~~~~~~Wl~~vr~~ayd~eD~ 56 (662)
+++|+.+++.+. .|+++++.+..- ... ..++..||.+.|+.|-|+++.
T Consensus 96 ~~Qie~vkd~mTyg~v~~T~k~y~~mvP~Lteee-k~~I~~~L~eARE~A~D~~~~ 150 (188)
T PF12875_consen 96 EEQIEQVKDGMTYGVVPFTYKGYLDMVPSLTEEE-KAQILTWLKEAREFAMDAKSS 150 (188)
T ss_dssp HHHHHHHHHHCTTTHHHHHHHHHHHH-TT--HHH-HHHHHHHHHHHHHHHTTSSSH
T ss_pred HHHHHHHHccccceehhhhHHHHHHHcCcccHHH-HHHHHHHHHHHHHHhccccch
Confidence 356666666653 566666655432 222 467899999999999999986
No 131
>PRK06620 hypothetical protein; Validated
Probab=20.62 E-value=4e+02 Score=25.33 Aligned_cols=65 Identities=9% Similarity=-0.038 Sum_probs=40.6
Q ss_pred CCceEEEEccc-------HHHHhhhCCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCc
Q 044550 193 HGSKIFVTTRN-------ESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLP 261 (662)
Q Consensus 193 ~gSrIivTTR~-------~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlP 261 (662)
.|..||+|++. +++...+....+++++++++++-..+..+.+-.. ....+ +++.+-|++.+.|--
T Consensus 112 ~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~l~l~---~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 112 KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-SVTIS---RQIIDFLLVNLPREY 183 (214)
T ss_pred cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHccCCH
Confidence 34567777653 3344445556699999999999888887766421 11111 456667777776543
Done!