Query 044550
Match_columns 662
No_of_seqs 426 out of 3818
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 07:09:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 8.1E-25 2.8E-29 240.8 16.0 156 193-357 264-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.8 8.5E-19 2.9E-23 213.0 17.6 202 140-355 121-452 (1249)
3 4fcg_A Uncharacterized protein 99.8 3.7E-19 1.3E-23 182.8 11.1 207 417-647 91-309 (328)
4 1ogq_A PGIP-2, polygalacturona 99.8 3.1E-19 1.1E-23 182.3 10.0 241 374-650 50-302 (313)
5 4fcg_A Uncharacterized protein 99.7 5E-18 1.7E-22 174.4 11.4 220 373-628 80-312 (328)
6 3o6n_A APL1; leucine-rich repe 99.7 6.5E-17 2.2E-21 170.6 15.7 122 373-507 44-171 (390)
7 3oja_B Anopheles plasmodium-re 99.7 5.7E-17 2E-21 180.8 14.9 121 374-507 51-177 (597)
8 3vq2_A TLR4, TOLL-like recepto 99.7 8.4E-17 2.9E-21 180.2 14.8 123 372-507 30-159 (606)
9 2id5_A Lingo-1, leucine rich r 99.7 1E-16 3.5E-21 174.0 13.8 224 372-628 30-259 (477)
10 3rgz_A Protein brassinosteroid 99.7 7.2E-17 2.5E-21 185.3 11.9 234 403-647 435-712 (768)
11 3v47_A TOLL-like receptor 5B a 99.7 1.2E-16 4.1E-21 172.3 12.9 126 372-498 28-175 (455)
12 2z80_A TOLL-like receptor 2, v 99.7 1.1E-16 3.7E-21 166.5 11.8 224 374-628 52-288 (353)
13 1vt4_I APAF-1 related killer D 99.7 1.1E-16 3.7E-21 179.3 11.8 141 193-349 264-437 (1221)
14 4ecn_A Leucine-rich repeat pro 99.7 2.5E-16 8.6E-21 180.2 14.8 133 373-508 490-651 (876)
15 4eco_A Uncharacterized protein 99.7 5.1E-17 1.8E-21 182.3 8.9 57 592-648 511-575 (636)
16 2z66_A Variable lymphocyte rec 99.7 1.6E-16 5.3E-21 161.8 10.7 200 409-631 30-237 (306)
17 3qfl_A MLA10; coiled-coil, (CC 99.7 4.4E-18 1.5E-22 143.7 -1.6 65 2-69 19-85 (115)
18 3rgz_A Protein brassinosteroid 99.7 2E-16 6.9E-21 181.6 11.7 72 590-661 628-718 (768)
19 2ft3_A Biglycan; proteoglycan, 99.7 5.2E-16 1.8E-20 159.9 13.4 197 406-630 74-277 (332)
20 1xku_A Decorin; proteoglycan, 99.6 9E-16 3.1E-20 157.9 14.6 217 374-629 52-275 (330)
21 1xku_A Decorin; proteoglycan, 99.6 1.1E-15 3.7E-20 157.4 14.8 218 407-650 52-274 (330)
22 1ogq_A PGIP-2, polygalacturona 99.6 4.8E-17 1.7E-21 166.0 4.5 217 410-648 53-277 (313)
23 4fmz_A Internalin; leucine ric 99.6 3E-15 1E-19 155.2 18.0 210 406-649 84-297 (347)
24 3zyi_A Leucine-rich repeat-con 99.6 8.3E-16 2.8E-20 165.4 13.6 215 408-647 76-298 (452)
25 4ecn_A Leucine-rich repeat pro 99.6 3.5E-16 1.2E-20 179.0 10.8 260 373-650 447-787 (876)
26 3zyj_A Leucine-rich repeat-con 99.6 1E-15 3.6E-20 164.1 13.9 215 409-647 66-287 (440)
27 1z6t_A APAF-1, apoptotic prote 99.6 2.1E-15 7.3E-20 168.0 16.4 195 142-353 123-450 (591)
28 4fmz_A Internalin; leucine ric 99.6 1.1E-14 3.6E-19 151.0 19.2 128 373-507 65-205 (347)
29 3bz5_A Internalin-J, INLJ; leu 99.6 6.4E-15 2.2E-19 158.2 18.1 201 373-628 41-244 (457)
30 4eco_A Uncharacterized protein 99.6 8E-16 2.8E-20 172.6 11.3 223 405-651 325-599 (636)
31 3t6q_A CD180 antigen; protein- 99.6 2E-15 6.7E-20 169.0 14.1 132 372-504 31-180 (606)
32 1o6v_A Internalin A; bacterial 99.6 9.9E-15 3.4E-19 157.7 19.0 97 406-507 108-227 (466)
33 3o6n_A APL1; leucine-rich repe 99.6 5.5E-16 1.9E-20 163.5 8.5 101 407-509 45-149 (390)
34 1o6v_A Internalin A; bacterial 99.6 4.8E-15 1.7E-19 160.1 16.0 244 374-661 46-323 (466)
35 2z80_A TOLL-like receptor 2, v 99.6 2.5E-15 8.6E-20 156.1 13.2 232 373-630 75-314 (353)
36 2z7x_B TOLL-like receptor 1, v 99.6 5.2E-15 1.8E-19 162.3 16.1 90 373-464 20-126 (520)
37 3v47_A TOLL-like receptor 5B a 99.6 9.7E-16 3.3E-20 165.1 10.0 107 402-508 46-161 (455)
38 1ozn_A Reticulon 4 receptor; N 99.6 5E-15 1.7E-19 148.9 14.2 202 407-629 32-237 (285)
39 3t6q_A CD180 antigen; protein- 99.6 2.6E-15 8.8E-20 168.1 13.4 122 375-508 255-383 (606)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 6.8E-15 2.3E-19 162.9 16.5 90 373-464 51-157 (562)
41 2z81_A CD282 antigen, TOLL-lik 99.6 5.8E-15 2E-19 163.1 15.9 135 373-507 25-178 (549)
42 2id5_A Lingo-1, leucine rich r 99.6 2.3E-15 7.7E-20 163.3 12.3 219 407-648 32-257 (477)
43 3j0a_A TOLL-like receptor 5; m 99.6 7.5E-15 2.6E-19 170.4 17.0 82 557-648 286-371 (844)
44 2z66_A Variable lymphocyte rec 99.6 6.7E-16 2.3E-20 157.1 6.9 209 416-647 16-231 (306)
45 1ozn_A Reticulon 4 receptor; N 99.6 3E-15 1E-19 150.6 11.3 207 417-648 21-234 (285)
46 1wwl_A Monocyte differentiatio 99.6 8.9E-16 3.1E-20 156.6 7.1 226 409-661 65-310 (312)
47 3oja_B Anopheles plasmodium-re 99.6 2.1E-15 7.3E-20 168.1 9.4 119 408-530 52-174 (597)
48 2z63_A TOLL-like receptor 4, v 99.6 8.9E-15 3E-19 162.4 14.3 123 372-507 26-155 (570)
49 1ziw_A TOLL-like receptor 3; i 99.6 4.2E-15 1.4E-19 168.7 11.8 136 372-507 23-177 (680)
50 3zyi_A Leucine-rich repeat-con 99.6 5.4E-15 1.8E-19 159.1 11.6 206 417-648 64-275 (452)
51 2z7x_B TOLL-like receptor 1, v 99.6 1.9E-14 6.4E-19 157.9 15.5 127 377-508 3-145 (520)
52 3vq2_A TLR4, TOLL-like recepto 99.6 1.9E-14 6.7E-19 160.9 15.4 120 373-504 55-180 (606)
53 3zyj_A Leucine-rich repeat-con 99.6 8.2E-15 2.8E-19 157.1 11.8 206 417-648 53-264 (440)
54 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.8E-14 9.6E-19 158.0 16.0 126 376-507 33-175 (562)
55 3j0a_A TOLL-like receptor 5; m 99.5 1.7E-14 5.9E-19 167.3 14.0 266 372-661 22-376 (844)
56 3g06_A SSPH2 (leucine-rich rep 99.5 6.2E-14 2.1E-18 155.2 17.3 220 373-647 60-292 (622)
57 2ft3_A Biglycan; proteoglycan, 99.5 6E-14 2.1E-18 144.4 15.8 248 373-649 53-330 (332)
58 3bz5_A Internalin-J, INLJ; leu 99.5 4.6E-14 1.6E-18 151.4 15.5 200 406-647 38-241 (457)
59 2z62_A TOLL-like receptor 4, v 99.5 2E-14 6.8E-19 143.8 11.8 200 408-630 29-237 (276)
60 1h6u_A Internalin H; cell adhe 99.5 4.6E-14 1.6E-18 143.5 12.6 190 406-629 40-229 (308)
61 2o6q_A Variable lymphocyte rec 99.5 6.8E-14 2.3E-18 139.4 12.7 172 411-628 41-216 (270)
62 2z62_A TOLL-like receptor 4, v 99.5 5.6E-14 1.9E-18 140.5 12.1 209 418-647 18-232 (276)
63 1h6u_A Internalin H; cell adhe 99.5 9.1E-14 3.1E-18 141.2 13.7 191 426-650 37-228 (308)
64 3o53_A Protein LRIM1, AGAP0063 99.5 2E-14 6.7E-19 146.9 8.2 210 406-648 30-246 (317)
65 2z63_A TOLL-like receptor 4, v 99.5 1.1E-14 3.9E-19 161.5 6.7 178 450-648 344-527 (570)
66 1ziw_A TOLL-like receptor 3; i 99.5 1.4E-13 4.6E-18 156.3 15.7 227 402-648 41-305 (680)
67 3oja_A Leucine-rich immune mol 99.5 3.8E-14 1.3E-18 153.5 10.3 181 416-628 43-225 (487)
68 1p9a_G Platelet glycoprotein I 99.5 2.7E-13 9.2E-18 136.4 15.6 165 416-628 40-206 (290)
69 2xwt_C Thyrotropin receptor; s 99.5 6.1E-14 2.1E-18 137.0 10.2 207 419-651 23-238 (239)
70 2z81_A CD282 antigen, TOLL-lik 99.5 5.3E-14 1.8E-18 155.4 10.4 222 407-649 26-261 (549)
71 3o53_A Protein LRIM1, AGAP0063 99.5 3.4E-15 1.2E-19 152.6 -0.3 234 373-650 33-273 (317)
72 1jl5_A Outer protein YOPM; leu 99.5 2.9E-13 1E-17 145.1 14.5 67 416-488 140-206 (454)
73 2o6q_A Variable lymphocyte rec 99.5 2.4E-13 8.2E-18 135.4 12.6 184 416-649 25-215 (270)
74 1p9a_G Platelet glycoprotein I 99.5 4.6E-13 1.6E-17 134.7 14.2 190 407-647 7-203 (290)
75 3oja_A Leucine-rich immune mol 99.5 4.9E-14 1.7E-18 152.6 7.1 231 374-647 34-270 (487)
76 4glp_A Monocyte differentiatio 99.5 5.9E-14 2E-18 142.9 7.3 89 557-661 220-308 (310)
77 4g8a_A TOLL-like receptor 4; l 99.5 1.5E-13 5E-18 154.5 11.2 118 371-489 49-185 (635)
78 1wwl_A Monocyte differentiatio 99.4 3.7E-14 1.3E-18 144.5 5.5 199 408-629 93-308 (312)
79 3g06_A SSPH2 (leucine-rich rep 99.4 1.6E-12 5.5E-17 143.9 17.2 205 372-630 79-297 (622)
80 2ast_B S-phase kinase-associat 99.4 2.3E-14 8E-19 147.7 1.7 201 411-627 74-282 (336)
81 2ca6_A RAN GTPase-activating p 99.4 1.7E-14 5.8E-19 151.8 -0.1 38 427-464 91-133 (386)
82 1jl5_A Outer protein YOPM; leu 99.4 4.5E-12 1.5E-16 135.9 17.2 113 373-508 90-202 (454)
83 3rfs_A Internalin B, repeat mo 99.4 1.2E-12 4.1E-17 130.5 11.7 167 416-630 50-218 (272)
84 3rfs_A Internalin B, repeat mo 99.4 5.2E-13 1.8E-17 133.1 8.4 119 373-508 40-164 (272)
85 3m19_A Variable lymphocyte rec 99.4 4.4E-12 1.5E-16 124.7 14.5 166 416-629 23-191 (251)
86 2ast_B S-phase kinase-associat 99.4 5.9E-14 2E-18 144.7 -0.5 223 424-661 62-307 (336)
87 1m9s_A Internalin B; cell inva 99.3 2.8E-12 9.5E-17 141.8 12.2 171 427-630 40-210 (605)
88 1h6t_A Internalin B; cell adhe 99.3 2.6E-12 9E-17 129.2 10.9 167 429-628 45-211 (291)
89 2xwt_C Thyrotropin receptor; s 99.3 1.3E-12 4.5E-17 127.5 8.4 195 408-628 32-237 (239)
90 2ca6_A RAN GTPase-activating p 99.3 6.2E-14 2.1E-18 147.5 -3.3 239 404-661 26-317 (386)
91 4ezg_A Putative uncharacterize 99.3 4.6E-12 1.6E-16 119.6 9.9 78 427-507 41-118 (197)
92 4ay9_X Follicle-stimulating ho 99.3 3.4E-12 1.2E-16 132.1 9.8 217 408-647 31-254 (350)
93 4glp_A Monocyte differentiatio 99.3 7E-12 2.4E-16 127.5 10.1 203 408-630 92-307 (310)
94 3m19_A Variable lymphocyte rec 99.3 4.5E-11 1.5E-15 117.4 14.3 118 376-507 16-137 (251)
95 3cvr_A Invasion plasmid antige 99.3 1.1E-11 3.7E-16 135.6 10.6 182 411-632 63-245 (571)
96 1xeu_A Internalin C; cellular 99.2 1.7E-11 5.8E-16 121.3 9.9 157 416-629 28-184 (263)
97 4ay9_X Follicle-stimulating ho 99.2 2.3E-11 7.9E-16 125.9 11.3 212 417-653 19-237 (350)
98 1h6t_A Internalin B; cell adhe 99.2 3.4E-11 1.2E-15 121.1 12.1 173 407-612 46-218 (291)
99 3cvr_A Invasion plasmid antige 99.2 3.1E-11 1.1E-15 132.0 10.8 177 431-661 60-244 (571)
100 1m9s_A Internalin B; cell inva 99.2 5.3E-11 1.8E-15 131.5 11.6 173 407-612 43-215 (605)
101 4ezg_A Putative uncharacterize 99.2 5.3E-11 1.8E-15 112.2 9.3 101 406-508 43-143 (197)
102 2o6s_A Variable lymphocyte rec 99.1 8.4E-11 2.9E-15 111.9 8.6 87 417-507 17-106 (208)
103 1z7x_W Ribonuclease inhibitor; 99.1 2.5E-12 8.7E-17 138.5 -2.6 186 431-628 86-295 (461)
104 3e6j_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 109.6 12.2 140 416-629 28-171 (229)
105 2v9t_B SLIT homolog 2 protein 99.1 3.9E-10 1.3E-14 108.2 12.6 87 417-507 21-110 (220)
106 2xot_A Amphoterin-induced prot 99.1 1.8E-10 6.1E-15 119.7 11.0 89 416-507 27-118 (361)
107 4b8c_D Glucose-repressible alc 99.1 7.8E-11 2.7E-15 133.5 7.8 105 402-508 216-323 (727)
108 3goz_A Leucine-rich repeat-con 99.1 7E-12 2.4E-16 130.5 -0.8 215 403-628 15-264 (362)
109 2v9t_B SLIT homolog 2 protein 99.1 3.3E-10 1.1E-14 108.7 10.9 97 410-507 35-134 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.1 4.4E-10 1.5E-14 107.8 10.7 96 411-507 36-135 (220)
111 2ell_A Acidic leucine-rich nuc 99.1 6.7E-10 2.3E-14 101.6 11.5 122 373-510 23-156 (168)
112 2xot_A Amphoterin-induced prot 99.1 4.6E-10 1.6E-14 116.6 11.6 99 408-507 40-142 (361)
113 4g8a_A TOLL-like receptor 4; l 99.0 1.3E-09 4.3E-14 122.3 12.9 200 426-646 367-574 (635)
114 1xeu_A Internalin C; cellular 99.0 1.5E-09 5E-14 107.3 11.7 144 406-572 37-183 (263)
115 2v70_A SLIT-2, SLIT homolog 2 99.0 1.4E-09 4.9E-14 104.2 11.0 124 373-508 31-160 (220)
116 2je0_A Acidic leucine-rich nuc 99.0 3.4E-10 1.2E-14 101.3 6.3 70 417-488 52-124 (149)
117 3e6j_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 105.4 10.5 90 416-507 49-141 (229)
118 3goz_A Leucine-rich repeat-con 99.0 2.8E-11 9.5E-16 125.9 -1.3 239 373-631 21-298 (362)
119 1z7x_W Ribonuclease inhibitor; 99.0 1.9E-11 6.3E-16 131.7 -3.0 233 373-628 2-267 (461)
120 3ogk_B Coronatine-insensitive 99.0 2.2E-11 7.6E-16 135.6 -2.9 66 420-485 283-350 (592)
121 2je0_A Acidic leucine-rich nuc 99.0 2.6E-10 9E-15 102.1 4.7 99 407-508 17-120 (149)
122 1w8a_A SLIT protein; signaling 99.0 1.3E-09 4.4E-14 102.1 8.9 98 409-507 31-132 (192)
123 2o6s_A Variable lymphocyte rec 98.9 3.6E-09 1.2E-13 100.5 11.5 99 407-507 28-130 (208)
124 1a9n_A U2A', U2A'; complex (nu 98.9 1.7E-09 5.9E-14 99.7 8.8 124 373-509 18-148 (176)
125 2ell_A Acidic leucine-rich nuc 98.9 6.4E-10 2.2E-14 101.8 5.8 97 408-507 25-126 (168)
126 1dce_A Protein (RAB geranylger 98.9 7.4E-10 2.5E-14 121.6 7.3 100 431-539 442-542 (567)
127 2wfh_A SLIT homolog 2 protein 98.9 2.6E-09 8.9E-14 100.1 9.4 96 410-507 34-132 (193)
128 1dce_A Protein (RAB geranylger 98.9 2.9E-09 9.8E-14 116.9 9.7 70 417-488 473-544 (567)
129 2wfh_A SLIT homolog 2 protein 98.9 5.7E-09 2E-13 97.7 10.4 90 416-508 19-109 (193)
130 1w8a_A SLIT protein; signaling 98.9 4.5E-09 1.5E-13 98.4 9.3 91 415-508 16-109 (192)
131 3ogk_B Coronatine-insensitive 98.9 7.5E-10 2.6E-14 123.2 4.5 80 427-507 189-276 (592)
132 1a9n_A U2A', U2A'; complex (nu 98.9 1.6E-09 5.6E-14 99.9 5.8 78 426-507 15-94 (176)
133 4b8c_D Glucose-repressible alc 98.8 5.9E-09 2E-13 118.1 8.3 116 416-539 210-325 (727)
134 2p1m_B Transport inhibitor res 98.8 1.5E-09 5.2E-14 120.7 2.8 84 404-487 150-245 (594)
135 2r9u_A Variable lymphocyte rec 98.7 1.8E-08 6.1E-13 92.6 8.3 88 416-507 21-111 (174)
136 2o6r_A Variable lymphocyte rec 98.7 4.1E-08 1.4E-12 90.5 10.1 98 408-507 29-130 (177)
137 3g39_A Variable lymphocyte rec 98.7 3.2E-08 1.1E-12 90.5 9.0 89 416-508 18-109 (170)
138 2r9u_A Variable lymphocyte rec 98.7 5E-08 1.7E-12 89.5 9.0 104 378-495 16-122 (174)
139 1ds9_A Outer arm dynein; leuci 98.7 1.3E-10 4.5E-15 109.6 -9.3 61 425-487 43-103 (198)
140 2o6r_A Variable lymphocyte rec 98.6 9.6E-08 3.3E-12 87.9 10.3 89 416-508 16-107 (177)
141 1ds9_A Outer arm dynein; leuci 98.6 5.4E-10 1.9E-14 105.3 -5.3 101 403-507 41-146 (198)
142 3g39_A Variable lymphocyte rec 98.6 6.7E-08 2.3E-12 88.3 8.6 99 378-489 13-114 (170)
143 2p1m_B Transport inhibitor res 98.6 5.2E-09 1.8E-13 116.4 1.1 205 428-648 128-347 (594)
144 2ifg_A High affinity nerve gro 98.4 4.9E-07 1.7E-11 93.0 8.4 87 418-507 20-109 (347)
145 2ifg_A High affinity nerve gro 98.1 3.7E-06 1.3E-10 86.4 7.9 83 406-489 27-115 (347)
146 3sb4_A Hypothetical leucine ri 98.1 2.8E-06 9.4E-11 86.7 6.6 53 452-506 100-153 (329)
147 2ra8_A Uncharacterized protein 98.1 2E-06 6.9E-11 88.3 4.4 61 445-508 164-226 (362)
148 3un9_A NLR family member X1; l 97.9 1.1E-06 3.7E-11 91.1 -1.4 60 429-489 71-138 (372)
149 3sb4_A Hypothetical leucine ri 97.6 0.00013 4.3E-09 74.2 9.5 168 409-600 100-327 (329)
150 4fdw_A Leucine rich hypothetic 97.6 0.00029 9.8E-09 73.6 12.2 178 426-628 176-356 (401)
151 3rw6_A Nuclear RNA export fact 97.6 7.3E-05 2.5E-09 72.7 6.1 80 427-508 167-258 (267)
152 2ra8_A Uncharacterized protein 97.4 0.00013 4.5E-09 74.8 6.2 170 445-628 131-318 (362)
153 3e4g_A ATP synthase subunit S, 97.3 0.00017 6E-09 65.0 4.5 61 429-489 60-126 (176)
154 4fdw_A Leucine rich hypothetic 97.3 0.00078 2.7E-08 70.2 10.0 185 418-627 145-333 (401)
155 3un9_A NLR family member X1; l 97.2 1.7E-05 5.9E-10 82.0 -3.1 78 429-507 100-189 (372)
156 3e4g_A ATP synthase subunit S, 96.6 0.0008 2.7E-08 60.6 2.7 83 532-630 63-152 (176)
157 3rw6_A Nuclear RNA export fact 96.4 0.0018 6.1E-08 62.9 3.8 76 408-484 168-258 (267)
158 1njg_A DNA polymerase III subu 96.3 0.026 9.1E-07 53.6 11.7 76 191-270 153-230 (250)
159 1io0_A Tropomodulin; LRR prote 96.3 0.00067 2.3E-08 62.4 -0.0 64 425-489 31-105 (185)
160 1io0_A Tropomodulin; LRR prote 96.2 0.0011 3.8E-08 60.9 1.3 83 406-489 32-135 (185)
161 2chg_A Replication factor C sm 94.6 0.19 6.4E-06 46.7 10.6 115 143-267 17-203 (226)
162 1hqc_A RUVB; extended AAA-ATPa 94.2 0.084 2.9E-06 52.8 7.5 53 214-270 161-213 (324)
163 1w5s_A Origin recognition comp 94.1 0.27 9.2E-06 50.9 11.4 67 197-268 182-266 (412)
164 2qen_A Walker-type ATPase; unk 93.8 0.49 1.7E-05 47.5 12.5 75 193-271 163-249 (350)
165 3rfe_A Platelet glycoprotein I 93.3 0.11 3.9E-06 44.1 5.6 34 431-464 32-66 (130)
166 3rfe_A Platelet glycoprotein I 93.0 0.11 3.7E-06 44.2 4.9 54 433-489 11-67 (130)
167 2fna_A Conserved hypothetical 91.3 0.27 9.4E-06 49.6 6.6 75 193-273 169-255 (357)
168 1sxj_B Activator 1 37 kDa subu 89.4 2.6 9E-05 41.5 11.9 74 193-270 136-212 (323)
169 4fs7_A Uncharacterized protein 88.2 1.2 4.1E-05 45.8 8.5 37 590-627 316-353 (394)
170 4fs7_A Uncharacterized protein 88.1 1.9 6.5E-05 44.2 10.0 37 590-627 339-376 (394)
171 2qby_A CDC6 homolog 1, cell di 86.4 3.2 0.00011 42.0 10.6 70 194-265 163-242 (386)
172 2v1u_A Cell division control p 85.6 5.8 0.0002 40.1 12.0 88 193-286 166-275 (387)
173 1iqp_A RFCS; clamp loader, ext 85.5 6 0.00021 38.9 11.9 75 192-270 138-214 (327)
174 4gt6_A Cell surface protein; l 82.7 5 0.00017 40.9 10.0 35 591-626 308-343 (394)
175 1fnn_A CDC6P, cell division co 77.8 11 0.00037 38.1 10.6 71 194-266 159-245 (389)
176 1jr3_A DNA polymerase III subu 74.5 16 0.00056 36.5 10.8 73 192-268 147-221 (373)
177 4h09_A Hypothetical leucine ri 71.8 11 0.00039 37.9 8.9 58 427-487 237-296 (379)
178 4h09_A Hypothetical leucine ri 71.5 12 0.0004 37.8 8.8 98 406-507 236-339 (379)
179 4gt6_A Cell surface protein; l 69.2 16 0.00056 37.0 9.4 14 556-569 352-365 (394)
180 2chq_A Replication factor C sm 65.6 41 0.0014 32.5 11.3 71 193-267 131-203 (319)
181 1pgv_A TMD-1, tropomodulin TMD 63.0 5.6 0.00019 36.1 3.8 61 428-489 39-110 (197)
182 1pgv_A TMD-1, tropomodulin TMD 61.5 3.9 0.00013 37.1 2.4 44 557-605 66-109 (197)
183 3h4m_A Proteasome-activating n 49.0 88 0.003 29.6 10.2 63 193-260 155-222 (285)
184 2qby_B CDC6 homolog 3, cell di 42.7 1.1E+02 0.0036 30.5 10.0 91 193-286 163-269 (384)
185 3pfi_A Holliday junction ATP-d 42.4 99 0.0034 30.1 9.6 50 213-266 176-225 (338)
186 2qen_A Walker-type ATPase; unk 42.4 12 0.0004 37.1 2.6 33 141-181 10-42 (350)
187 1sxj_D Activator 1 41 kDa subu 40.0 1.9E+02 0.0064 28.1 11.4 70 194-267 163-234 (353)
188 1sxj_A Activator 1 95 kDa subu 39.4 60 0.0021 34.2 7.8 52 213-268 201-253 (516)
189 2fna_A Conserved hypothetical 38.7 15 0.00051 36.4 2.7 31 141-181 11-41 (357)
190 1jbk_A CLPB protein; beta barr 35.8 23 0.00079 31.0 3.3 33 143-181 22-54 (195)
191 3ro3_B Minsc, peptide of prote 33.4 26 0.00088 18.6 1.7 14 36-49 7-20 (22)
192 3l4f_A RHO guanine nucleotide 29.1 1.1E+02 0.0037 21.4 4.8 48 5-52 10-57 (61)
193 3pvs_A Replication-associated 28.8 2.9E+02 0.0099 28.3 10.7 53 213-265 157-212 (447)
194 2qby_B CDC6 homolog 3, cell di 27.8 25 0.00087 35.2 2.3 38 142-181 19-56 (384)
195 2p65_A Hypothetical protein PF 27.6 33 0.0011 29.8 2.8 33 143-181 22-54 (187)
196 2qz4_A Paraplegin; AAA+, SPG7, 27.5 2.4E+02 0.0083 25.8 9.3 66 194-262 145-215 (262)
197 2vda_B Maltoporin; sugar trans 26.6 36 0.0012 18.8 1.6 18 257-274 8-25 (28)
198 2w6b_A RHO guanine nucleotide 26.3 1.4E+02 0.0047 20.3 4.7 25 4-28 12-36 (56)
199 3bos_A Putative DNA replicatio 24.4 1.6E+02 0.0056 26.4 7.3 50 213-266 166-215 (242)
200 3a7p_A Autophagy protein 16; c 24.3 1E+02 0.0035 26.1 4.9 48 9-56 96-147 (152)
201 3eie_A Vacuolar protein sortin 20.7 3.6E+02 0.012 25.9 9.2 64 193-260 153-219 (322)
202 1a5t_A Delta prime, HOLB; zinc 20.6 4.7E+02 0.016 25.2 10.1 104 152-266 93-203 (334)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.92 E-value=8.1e-25 Score=240.76 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=121.5
Q ss_pred CCceEEEEcccHHHHhhhC-CCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhh
Q 044550 193 HGSKIFVTTRNESVARMMG-STNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLL 271 (662)
Q Consensus 193 ~gSrIivTTR~~~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L 271 (662)
+||+||||||++.|+..++ ...+|++++|++++||+||.++||... .++++++++++|+++|+|+||||+++|+.|
T Consensus 264 ~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l 340 (549)
T 2a5y_B 264 LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSC 340 (549)
T ss_dssp TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHh
Confidence 7999999999999999886 346899999999999999999998643 246888999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhhhhhh------------------------h--------------------------hhhc--Ccc
Q 044550 272 RSKSTVKEWQRILESEMWKV------------------------L--------------------------EIGQ--GYL 299 (662)
Q Consensus 272 ~~~~~~~~w~~~l~~~~~~~------------------------~--------------------------~iae--g~i 299 (662)
+.+ .. +|...+.+..+.. . .+|+ ||+
T Consensus 341 ~~~-~w-~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i 418 (549)
T 2a5y_B 341 EPK-TF-EKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDI 418 (549)
T ss_dssp CSS-SH-HHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC--
T ss_pred ccc-hH-HHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeecccee
Confidence 877 33 3333343332210 0 0778 888
Q ss_pred cCCC-CchHHHHHHHHHHHHHhcCcccccccCCCCCeeeEEcChHHHHHHHHhhccceE
Q 044550 300 NAKE-DEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECL 357 (662)
Q Consensus 300 ~~~~-~~~~~~~~~~~~~~L~~rsli~~~~~~~~~~~~~~~mHdll~dl~~~i~~~e~~ 357 (662)
.... +.+.+++++ ||++|++|||+++...+ ...+|+|||++|++|++++.++++
T Consensus 419 ~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 419 CSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -----CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred ccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 8766 677888888 99999999999987643 456899999999999999988764
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.78 E-value=8.5e-19 Score=213.02 Aligned_cols=202 Identities=20% Similarity=0.291 Sum_probs=148.6
Q ss_pred ccCCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc-----------------ccch-----------------
Q 044550 140 IDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI-----------------EPFF----------------- 185 (662)
Q Consensus 140 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----------------~~F~----------------- 185 (662)
...+.+|||++++++|.++|..... ..++|+|+||||+ .+|.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~----~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNG----EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTT----SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccC----CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 3456799999999999999986543 7799999999999 1132
Q ss_pred ----------------------------------------------------hhhhcCCCCceEEEEcccHHHHhh-hCC
Q 044550 186 ----------------------------------------------------LRLKNGLHGSKIFVTTRNESVARM-MGS 212 (662)
Q Consensus 186 ----------------------------------------------------~~l~~~~~gSrIivTTR~~~v~~~-~~~ 212 (662)
..+...++|||||||||++.|+.. ++.
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSC
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCC
Confidence 223334689999999999999965 455
Q ss_pred CCeeeCCC-CChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCHHHHHHHHhhhhh--
Q 044550 213 TNIISIKQ-LAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMW-- 289 (662)
Q Consensus 213 ~~~~~l~~-L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~~~~-- 289 (662)
...+.+.+ |++++||+||...++.. .+.+.+++++|+++|+|+||||+++|++|+.++ ..|+..+.....
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence 77999996 99999999999998532 234557799999999999999999999999875 356655543210
Q ss_pred ----------------hhhhhhc--------------CcccCCCC----------chHHHHHHHHHHHHHhcCccccccc
Q 044550 290 ----------------KVLEIGQ--------------GYLNAKED----------EEMEMIGEECFNILAARSFFQEFKK 329 (662)
Q Consensus 290 ----------------~~~~iae--------------g~i~~~~~----------~~~~~~~~~~~~~L~~rsli~~~~~ 329 (662)
....+++ +.+.+... ...++.++.++++|+++||++...
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~- 428 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNR- 428 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEE-
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEec-
Confidence 0001111 11111110 111466789999999999998654
Q ss_pred CCCCCeeeEEcChHHHHHHHHhhccc
Q 044550 330 NDDDDIMSCKMHDIVHDFAQFVSSKE 355 (662)
Q Consensus 330 ~~~~~~~~~~mHdll~dl~~~i~~~e 355 (662)
++...+|+|||++|++++..+.++
T Consensus 429 --~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 429 --NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp --SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred --CCCceEEEecHHHHHHHHhhhhHH
Confidence 345567999999999999998776
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=3.7e-19 Score=182.84 Aligned_cols=207 Identities=23% Similarity=0.303 Sum_probs=108.8
Q ss_pred ccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCc
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIG 496 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~ 496 (662)
+.+..+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..++++++|++|++++|.....+|..
T Consensus 91 n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 91 VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChh
Confidence 344444444555555555555555555555555555555555555554 3455555555555555555554444445544
Q ss_pred CCC---------CCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEE
Q 044550 497 ISR---------LTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLG 567 (662)
Q Consensus 497 i~~---------L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 567 (662)
++. +++|++|++..+ ... ..+. .+..+++|+.|.+.+.. +... ...+..+++|+.|+
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n--~l~-~lp~---~l~~l~~L~~L~L~~N~----l~~l----~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWT--GIR-SLPA---SIANLQNLKSLKIRNSP----LSAL----GPAIHHLPKLEELD 235 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEE--CCC-CCCG---GGGGCTTCCEEEEESSC----CCCC----CGGGGGCTTCCEEE
T ss_pred HhhccchhhhccCCCCCEEECcCC--CcC-cchH---hhcCCCCCCEEEccCCC----CCcC----chhhccCCCCCEEE
Confidence 432 455555542221 111 1111 12333333333333320 0110 11244556666666
Q ss_pred EEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecC-CCCCCcccccccCccEEEecCCCCCCCCCC-CCCcc-ccee
Q 044550 568 LQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKL 644 (662)
Q Consensus 568 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l 644 (662)
++.+.... .....+..+++|+.|++++|. ...+|.++..+++|++|+|++|...+.+|. ++.+| ++.+
T Consensus 236 Ls~n~~~~---------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 236 LRGCTALR---------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp CTTCTTCC---------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred CcCCcchh---------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 66543210 122345566788888888765 345687888888888888888887777764 67777 7777
Q ss_pred ecc
Q 044550 645 QLK 647 (662)
Q Consensus 645 ~l~ 647 (662)
.+.
T Consensus 307 ~l~ 309 (328)
T 4fcg_A 307 LVP 309 (328)
T ss_dssp ECC
T ss_pred eCC
Confidence 665
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=3.1e-19 Score=182.29 Aligned_cols=241 Identities=22% Similarity=0.278 Sum_probs=182.9
Q ss_pred CceeEEEEecCCCCC---cccccccccccccchHhhhcCcccccc---c-cccc-ccCcccCCCCccceeeecCCCCc-c
Q 044550 374 DNVRHLGLNFQRGAS---FPMSIHRFNRFSILSELFSKLVFLRAL---R-NWIR-EIPENVGKLIHLKYLNLSELRIE-R 444 (662)
Q Consensus 374 ~~~r~l~l~~~~~~~---~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~-~~~~-~lp~~i~~l~~Lr~L~L~~~~i~-~ 444 (662)
..++.+.+..+.+.. +|.. +.+++.|+.+ + +.+. .+|..++++++|++|++++|.++ .
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-------------l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-------------LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-------------GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred ceEEEEECCCCCccCCcccChh-------------HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc
Confidence 578899998887763 3332 5566666666 2 5554 67999999999999999999998 8
Q ss_pred cchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCC-CCCccCceeecCccCCCCccCc
Q 044550 445 IPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLT-SLRTLEKFVVGGGVDGGGTCRL 523 (662)
Q Consensus 445 lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~l 523 (662)
+|..++++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|++. .+...+..+..+
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~--~N~l~~~~~~~~ 194 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS--RNRLTGKIPPTF 194 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC--SSEEEEECCGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc--CCeeeccCChHH
Confidence 899999999999999999984458899999999999999999987668999999998 99999743 333322223334
Q ss_pred cccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEee
Q 044550 524 ESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIES 603 (662)
Q Consensus 524 ~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 603 (662)
.. ++ |+.|.+++. .+.......+..+++|+.|+++.+... .....+..+++|++|++++
T Consensus 195 ~~---l~-L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 195 AN---LN-LAFVDLSRN-------MLEGDASVLFGSDKNTQKIHLAKNSLA----------FDLGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp GG---CC-CSEEECCSS-------EEEECCGGGCCTTSCCSEEECCSSEEC----------CBGGGCCCCTTCCEEECCS
T ss_pred hC---Cc-ccEEECcCC-------cccCcCCHHHhcCCCCCEEECCCCcee----------eecCcccccCCCCEEECcC
Confidence 33 33 666665543 112223345678899999999876430 1122356779999999999
Q ss_pred cCCC-CCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeeccccc
Q 044550 604 YRGN-IFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLK 650 (662)
Q Consensus 604 ~~~~-~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l~ 650 (662)
|.+. .+|.++..+++|++|+|++|.....+|..+.+| |+.+.+.+-+
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 9987 789999999999999999998777888888888 7777666544
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=5e-18 Score=174.42 Aligned_cols=220 Identities=20% Similarity=0.280 Sum_probs=171.2
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhh
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETL 449 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i 449 (662)
...++.|.+..+.+..+|..+ .+++.|+.+ +|.+..+|..++++++|++|+|++|.++.+|..+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l-------------~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l 146 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQA-------------FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI 146 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCG-------------GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG
T ss_pred ccceeEEEccCCCchhcChhh-------------hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH
Confidence 467889999998888776554 334455555 6788899999999999999999999999999999
Q ss_pred hcCCCccEEeccCCCCCccCCccccc---------cccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCc
Q 044550 450 CELYNLQKLDIRGCQYLRGLPAGIRK---------LMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGT 520 (662)
Q Consensus 450 ~~L~~L~~L~l~~~~~l~~lP~~i~~---------L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~ 520 (662)
+++++|++|++++|..+..+|..++. +++|++|++++|.. ..+|..++.+++|++|++ .++.... .+
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L--~~N~l~~-l~ 222 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKI--RNSPLSA-LG 222 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEE--ESSCCCC-CC
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEc--cCCCCCc-Cc
Confidence 99999999999999888999988765 99999999999976 589999999999999974 3444321 22
Q ss_pred cCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEE
Q 044550 521 CRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELE 600 (662)
Q Consensus 521 ~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~ 600 (662)
..+..+++|+.|.+++..... .....+..+++|+.|+++.+.... .....+..+++|+.|+
T Consensus 223 ---~~l~~l~~L~~L~Ls~n~~~~-------~~p~~~~~l~~L~~L~L~~n~~~~---------~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 223 ---PAIHHLPKLEELDLRGCTALR-------NYPPIFGGRAPLKRLILKDCSNLL---------TLPLDIHRLTQLEKLD 283 (328)
T ss_dssp ---GGGGGCTTCCEEECTTCTTCC-------BCCCCTTCCCCCCEEECTTCTTCC---------BCCTTGGGCTTCCEEE
T ss_pred ---hhhccCCCCCEEECcCCcchh-------hhHHHhcCCCCCCEEECCCCCchh---------hcchhhhcCCCCCEEe
Confidence 245666677777777642111 122346778899999998765321 1233456678999999
Q ss_pred EeecC-CCCCCcccccccCccEEEecCCC
Q 044550 601 IESYR-GNIFPKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 601 l~~~~-~~~lP~~i~~l~~L~~L~L~~~~ 628 (662)
+++|. ...+|.++..+++|+.+.+..+.
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99976 45689999999999999999765
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=6.5e-17 Score=170.62 Aligned_cols=122 Identities=18% Similarity=0.187 Sum_probs=69.8
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCc-ccCCCCccceeeecCCCCcccch-
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPE-NVGKLIHLKYLNLSELRIERIPE- 447 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~- 447 (662)
...++.+.+..+.+..+|..+ +..++.|+++ ++.+..+|. .+..+++|++|++++|.++.+|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~------------~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAAL------------LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTHH------------HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCceEEEecCCchhhCChhH------------hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence 356777777777666554332 4444445544 345555533 55666666666666666665543
Q ss_pred hhhcCCCccEEeccCCCCCccCCccc-cccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550 448 TLCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 448 ~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 507 (662)
.++++++|++|++++|. +..+|..+ ..+++|++|++++|......|..++.+++|++|+
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 35666666666666665 55555543 5666666666666654333344456666666664
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=5.7e-17 Score=180.76 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=71.6
Q ss_pred CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccC-cccCCCCccceeeecCCCCcccch-h
Q 044550 374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIP-ENVGKLIHLKYLNLSELRIERIPE-T 448 (662)
Q Consensus 374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~ 448 (662)
..++.+.+..+.+..+|. ..+..++.|++| +|.+..+| ..++.+++|++|+|++|.++.+|+ .
T Consensus 51 ~~l~~l~l~~~~l~~lp~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 118 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPA------------ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118 (597)
T ss_dssp CCCSEEEESSCEESEECT------------HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCceEEEeeCCCCCCcCH------------HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH
Confidence 345556555555444432 234555555555 35555554 356666777777777776666654 3
Q ss_pred hhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550 449 LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 449 i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 507 (662)
++++++|++|++++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|+
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 4667777777777665 5566554 36666777777776655444444566666666665
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=8.4e-17 Score=180.17 Aligned_cols=123 Identities=24% Similarity=0.284 Sum_probs=78.1
Q ss_pred CCCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCccc-c
Q 044550 372 FGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERI-P 446 (662)
Q Consensus 372 ~~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p 446 (662)
.+..++.+.+..+.+..++. ..|.+++.|+++ +|.+..+ |..|.++++|++|+|++|.++.+ |
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p 97 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKS------------YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97 (606)
T ss_dssp SCTTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred CCCCcCEEECCCCCcCEeCh------------hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh
Confidence 35678888888777765532 124455555555 3555555 44566677777777777776665 5
Q ss_pred hhhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCcccc-ccCCcCCCCCCCCccC
Q 044550 447 ETLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLK-YMPIGISRLTSLRTLE 507 (662)
Q Consensus 447 ~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~ 507 (662)
..++++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|+
T Consensus 98 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp TSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred hhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence 567777777777777766 44444 556677777777777765432 4566677777777765
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=173.97 Aligned_cols=224 Identities=23% Similarity=0.228 Sum_probs=134.6
Q ss_pred CCCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccch
Q 044550 372 FGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIPE 447 (662)
Q Consensus 372 ~~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~ 447 (662)
.+..++.|.+..+.+..++. ..|.+++.|+.| +|.+..+ |..+.++++|++|+|++|.++.+|.
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~------------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQ------------DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp CCTTCSEEECCSSCCCEECT------------TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CCCCCcEEECCCCccceECH------------hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence 35677888887777664421 225566666666 4667766 6778889999999999998888876
Q ss_pred h-hhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCcccc
Q 044550 448 T-LCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESL 526 (662)
Q Consensus 448 ~-i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L 526 (662)
. ++++++|++|++++|......|..+..+++|++|++++|......|..++.+++|++|++ ..+......... +
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~---l 172 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL--EKCNLTSIPTEA---L 172 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE--ESCCCSSCCHHH---H
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC--CCCcCcccChhH---h
Confidence 4 688899999999988844445667888899999999888765555667888888888863 333332222222 3
Q ss_pred ccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCC
Q 044550 527 KNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRG 606 (662)
Q Consensus 527 ~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 606 (662)
..+++|+.|.+.+.. ........+..+.+|+.|+++.+..... .........+|++|++++|..
T Consensus 173 ~~l~~L~~L~l~~n~-------i~~~~~~~~~~l~~L~~L~l~~~~~~~~---------~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 173 SHLHGLIVLRLRHLN-------INAIRDYSFKRLYRLKVLEISHWPYLDT---------MTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp TTCTTCCEEEEESCC-------CCEECTTCSCSCTTCCEEEEECCTTCCE---------ECTTTTTTCCCSEEEEESSCC
T ss_pred cccCCCcEEeCCCCc-------CcEeChhhcccCcccceeeCCCCccccc---------cCcccccCccccEEECcCCcc
Confidence 344445554444321 1111222345556666666665432110 001111223555555555555
Q ss_pred CCCCc-ccccccCccEEEecCCC
Q 044550 607 NIFPK-WLTSLTNLRELKLSLCV 628 (662)
Q Consensus 607 ~~lP~-~i~~l~~L~~L~L~~~~ 628 (662)
..+|. .+..+++|++|+|++|.
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSC
T ss_pred cccCHHHhcCccccCeeECCCCc
Confidence 55542 23455555555555554
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=7.2e-17 Score=185.33 Aligned_cols=234 Identities=17% Similarity=0.153 Sum_probs=124.7
Q ss_pred hHhhhcCcccccc---ccccc-ccCcccCCCCccceeeecCCCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccc
Q 044550 403 SELFSKLVFLRAL---RNWIR-EIPENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLM 477 (662)
Q Consensus 403 ~~~~~~l~~Lrvl---~~~~~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~ 477 (662)
|..+..++.|+.+ +|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++.++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 3445555555555 24443 45566666666666666666655 4566666666666666666664445666666666
Q ss_pred cccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccc---------------------
Q 044550 478 NMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCS--------------------- 536 (662)
Q Consensus 478 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~--------------------- 536 (662)
+|++|++++|.....+|..++.+++|+.|++ ..+...+..+..+.....+..+....
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L--s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDL--NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEEC--CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEEC--CCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 6666666666655566666666666666653 22222222222222211111110000
Q ss_pred -----------cccCCCCCC--C--CChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEE
Q 044550 537 -----------IEGLKGLSN--V--SHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEI 601 (662)
Q Consensus 537 -----------i~~~~~~~~--~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l 601 (662)
+..+..... . ..........+..+.+|+.|+++.+... ...+..+..+++|+.|++
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~---------g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS---------GYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB---------SCCCGGGGGCTTCCEEEC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc---------ccCCHHHhccccCCEEeC
Confidence 000000000 0 0000111123455677888888776431 112344556778888888
Q ss_pred eecCCC-CCCcccccccCccEEEecCCCCCCCCCC-CCCcc-cceeecc
Q 044550 602 ESYRGN-IFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLK 647 (662)
Q Consensus 602 ~~~~~~-~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l~l~ 647 (662)
++|... .+|..++.+++|++|+|++|+....+|. ++.++ |+.|++.
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 888766 6788888888888888888876555553 45555 5555444
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.68 E-value=1.2e-16 Score=172.30 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=87.7
Q ss_pred CCCceeEEEEecCCCCCc-ccccccccccc------------cchHhhhcCcccccc---ccccccc-CcccCCCCccce
Q 044550 372 FGDNVRHLGLNFQRGASF-PMSIHRFNRFS------------ILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKY 434 (662)
Q Consensus 372 ~~~~~r~l~l~~~~~~~~-~~~~~~l~~l~------------~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~ 434 (662)
.+..+++|.+..+.+..+ |..+.++..+. ..+..|.+++.|+.| +|.+..+ |..++++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 467899999998887755 34444443321 123456777777777 4666665 677888888888
Q ss_pred eeecCCCCcc-cchh--hhcCCCccEEeccCCCCCccC-Ccc-ccccccccEEecCCCccccccCCcCC
Q 044550 435 LNLSELRIER-IPET--LCELYNLQKLDIRGCQYLRGL-PAG-IRKLMNMRSLLNDGTYLLKYMPIGIS 498 (662)
Q Consensus 435 L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-P~~-i~~L~~L~~L~l~~~~~~~~~p~~i~ 498 (662)
|++++|.++. +|.. ++++++|++|++++|. +..+ |.. +.++++|++|++++|......|..++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 8888888874 4444 8888888888888887 4444 555 78888888888888876444444443
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=166.47 Aligned_cols=224 Identities=18% Similarity=0.125 Sum_probs=125.5
Q ss_pred CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccchh-
Q 044550 374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIPET- 448 (662)
Q Consensus 374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~- 448 (662)
..++.|.+..+.+..++. ..+.+++.|+.+ +|.+..+ |..+.++++|++|++++|.++.+|..
T Consensus 52 ~~L~~L~l~~n~i~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISN------------SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119 (353)
T ss_dssp TTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred ccCcEEECCCCcCcccCH------------HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence 456666665555543322 124455555555 4666666 44577788888888888888877765
Q ss_pred hhcCCCccEEeccCCCCCccCCc--cccccccccEEecCCCcccccc-CCcCCCCCCCCccCceeecCccCCCCccCccc
Q 044550 449 LCELYNLQKLDIRGCQYLRGLPA--GIRKLMNMRSLLNDGTYLLKYM-PIGISRLTSLRTLEKFVVGGGVDGGGTCRLES 525 (662)
Q Consensus 449 i~~L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~ 525 (662)
++++++|++|++++|. +..+|. .+..+++|++|++++|..+..+ |..++.+++|++|++. ++......+ ..
T Consensus 120 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~---~~ 193 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID--ASDLQSYEP---KS 193 (353)
T ss_dssp HTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE--ETTCCEECT---TT
T ss_pred hCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC--CCCcCccCH---HH
Confidence 7778888888888876 667766 5777888888888877433444 4567778888877633 333221112 23
Q ss_pred cccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecC
Q 044550 526 LKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR 605 (662)
Q Consensus 526 L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 605 (662)
+..+++|+.|.+.+. ..... ....+..+++|+.|+++.+........ .+........++.+++.++.
T Consensus 194 l~~l~~L~~L~l~~n----~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~------~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 194 LKSIQNVSHLILHMK----QHILL---LEIFVDVTSSVECLELRDTDLDTFHFS------ELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp TTTCSEEEEEEEECS----CSTTH---HHHHHHHTTTEEEEEEESCBCTTCCCC------------CCCCCCEEEEESCB
T ss_pred HhccccCCeecCCCC----ccccc---hhhhhhhcccccEEECCCCcccccccc------ccccccccchhhcccccccc
Confidence 444455555555543 11221 222233467788888876643111000 01111223344445554443
Q ss_pred CC-----CCCcccccccCccEEEecCCC
Q 044550 606 GN-----IFPKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 606 ~~-----~lP~~i~~l~~L~~L~L~~~~ 628 (662)
.. .+|.++..+++|++|+|++|.
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 22 245555666666666666665
No 13
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.67 E-value=1.1e-16 Score=179.29 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=96.3
Q ss_pred CCceEEEEcccHHHHhhhCCCCeeeCC------CCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHH
Q 044550 193 HGSKIFVTTRNESVARMMGSTNIISIK------QLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKV 266 (662)
Q Consensus 193 ~gSrIivTTR~~~v~~~~~~~~~~~l~------~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ 266 (662)
+|||||||||++.++..+....+|.++ +|+++|||+||+++ |+.. ..++..+| |+|+||||++
T Consensus 264 pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-------~eeL~~eI---CgGLPLALkL 332 (1221)
T 1vt4_I 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-------PQDLPREV---LTTNPRRLSI 332 (1221)
T ss_dssp SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-------TTTHHHHH---CCCCHHHHHH
T ss_pred CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC-------HHHHHHHH---hCCCHHHHHH
Confidence 799999999999999766555577888 99999999999998 4322 12334444 9999999999
Q ss_pred HHHhhcCCC-CHHHHHHHHhhhhhhhhh---------h-h-----cCcccCCCCchH-----------HHHHHHHHHHHH
Q 044550 267 IGNLLRSKS-TVKEWQRILESEMWKVLE---------I-G-----QGYLNAKEDEEM-----------EMIGEECFNILA 319 (662)
Q Consensus 267 ig~~L~~~~-~~~~w~~~l~~~~~~~~~---------i-a-----eg~i~~~~~~~~-----------~~~~~~~~~~L~ 319 (662)
+|+.|+.+. ..++|+..-...+....+ . . .+.+........ ++.++.+|++|+
T Consensus 333 aGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLv 412 (1221)
T 1vt4_I 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412 (1221)
T ss_dssp HHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999885 678897532111111111 0 0 111111111000 235789999999
Q ss_pred hcCcccccccCCCCCeeeEEcChHHHHHHH
Q 044550 320 ARSFFQEFKKNDDDDIMSCKMHDIVHDFAQ 349 (662)
Q Consensus 320 ~rsli~~~~~~~~~~~~~~~mHdll~dl~~ 349 (662)
++|||+.. +...+|+|||++++++.
T Consensus 413 dRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 413 KYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp TSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred hhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 99999984 22357999999999663
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=2.5e-16 Score=180.19 Aligned_cols=133 Identities=14% Similarity=0.242 Sum_probs=97.7
Q ss_pred CCceeEEEEecCCC-CCcccccccccccc-------------cchHhhhcCc-------ccccc---cccccccCc--cc
Q 044550 373 GDNVRHLGLNFQRG-ASFPMSIHRFNRFS-------------ILSELFSKLV-------FLRAL---RNWIREIPE--NV 426 (662)
Q Consensus 373 ~~~~r~l~l~~~~~-~~~~~~~~~l~~l~-------------~~~~~~~~l~-------~Lrvl---~~~~~~lp~--~i 426 (662)
...++.|.+..+.. ..+|..+.++..|. .+|..+.++. .|+.| +|.+..+|. .+
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 46788999988764 46666665554331 1333344333 55555 567778888 88
Q ss_pred CCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccccccc-ccEEecCCCccccccCCcCCCCCC--C
Q 044550 427 GKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMN-MRSLLNDGTYLLKYMPIGISRLTS--L 503 (662)
Q Consensus 427 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~-L~~L~l~~~~~~~~~p~~i~~L~~--L 503 (662)
+++++|++|+|++|.++.+| .++++++|+.|++++|. +..+|..+..+++ |++|++++|.. ..+|..++.++. |
T Consensus 570 ~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVM 646 (876)
T ss_dssp TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCE
T ss_pred hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCC-CcCchhhhccccCCC
Confidence 88888899999888888888 78888888889888888 6688888888888 88888888875 478877766654 7
Q ss_pred CccCc
Q 044550 504 RTLEK 508 (662)
Q Consensus 504 ~~L~~ 508 (662)
+.|++
T Consensus 647 ~~L~L 651 (876)
T 4ecn_A 647 GSVDF 651 (876)
T ss_dssp EEEEC
T ss_pred CEEEC
Confidence 77753
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=5.1e-17 Score=182.29 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=34.6
Q ss_pred CCCCCcEEEEeecCCCCCCcccccccCccEEEecC------CCCCCCCC-CCCCcc-cceeeccc
Q 044550 592 PPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSL------CVNCEHLP-PLGKLP-LEKLQLKN 648 (662)
Q Consensus 592 ~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~------~~~~~~lp-~l~~Lp-L~~l~l~~ 648 (662)
.+++|+.|++++|....+|.++..+++|++|+|++ |.....+| .++.+| |+.|++.+
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 55667777777776666677777777777777743 33333444 355566 66665554
No 16
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=1.6e-16 Score=161.80 Aligned_cols=200 Identities=18% Similarity=0.066 Sum_probs=106.3
Q ss_pred CcccccccccccccCcc-cCCCCccceeeecCCCCccc---chhhhcCCCccEEeccCCCCCccCCccccccccccEEec
Q 044550 409 LVFLRALRNWIREIPEN-VGKLIHLKYLNLSELRIERI---PETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLN 484 (662)
Q Consensus 409 l~~Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l 484 (662)
++.|.+-++.+..+|.. +.++++|++|++++|.++.+ |..+.++.+|++|++++|. +..+|..+..+++|++|++
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEEC
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEEC
Confidence 33333334555566554 45666666666666666544 4556666666666666665 5566666666666666666
Q ss_pred CCCccccccC--CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhh-hhhccccccc
Q 044550 485 DGTYLLKYMP--IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDE-VERLQLYNKK 561 (662)
Q Consensus 485 ~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~-~~~~~l~~~~ 561 (662)
++|.. ..+| ..+..+++|++|++. .+......+.. +..+++|+.|.+.+. .+.. .....+..++
T Consensus 109 ~~n~l-~~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~~~---~~~l~~L~~L~l~~n-------~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 109 QHSNL-KQMSEFSVFLSLRNLIYLDIS--HTHTRVAFNGI---FNGLSSLEVLKMAGN-------SFQENFLPDIFTELR 175 (306)
T ss_dssp TTSEE-ESSTTTTTTTTCTTCCEEECT--TSCCEECSTTT---TTTCTTCCEEECTTC-------EEGGGEECSCCTTCT
T ss_pred CCCcc-cccccchhhhhccCCCEEECC--CCcCCccchhh---cccCcCCCEEECCCC-------ccccccchhHHhhCc
Confidence 66654 3333 246666666666422 22211111112 233333444443332 0111 1223345556
Q ss_pred cCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCCCC
Q 044550 562 NLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVNCE 631 (662)
Q Consensus 562 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~~~ 631 (662)
+|+.|+++.+... ......+..+++|++|++++|....+|. .+..+++|++|+|++|....
T Consensus 176 ~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 176 NLTFLDLSQCQLE---------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TCCEEECTTSCCC---------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CCCEEECCCCCcC---------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 6777766655320 0012334556677777777777665554 45567777777777776443
No 17
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=4.4e-18 Score=143.71 Aligned_cols=65 Identities=26% Similarity=0.362 Sum_probs=60.1
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHhh--hccCcHHHHHHHHHHHhccccccccchhhhhhhhhccc
Q 044550 2 RLVTGVDEEVKKLTINLEAIRAVLEDAKKR--QMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAP 69 (662)
Q Consensus 2 ~l~~~v~~~~~~l~~~L~~i~a~L~~a~~~--~~~~~~~~~~Wl~~vr~~ayd~eD~~~lD~~~~~~~~~ 69 (662)
.+++||++|+++|++||++|+|||.+|+++ +.. |++++.|++||||+||||||+ ||+|.++....
T Consensus 19 ~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~-d~~vk~W~~~vrdlaYD~ED~--iD~f~~~~~~~ 85 (115)
T 3qfl_A 19 KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQL-DSQDKLWADEVRELSYVIEDV--VDKFLVQVDGI 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGC-CHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccC-CHHHHHHHHHHHHHHHHHHHH--HHHHHHHhccc
Confidence 467899999999999999999999999987 556 999999999999999999999 99999998644
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.65 E-value=2e-16 Score=181.62 Aligned_cols=72 Identities=22% Similarity=0.238 Sum_probs=57.4
Q ss_pred CCCCCCCcEEEEeecCCC-CCCcccccccCccEEEecCCCCCCCCCC-CCCcc-cceeecc----------------ccc
Q 044550 590 LQPPLNVEELEIESYRGN-IFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLK----------------NLK 650 (662)
Q Consensus 590 l~~~~~L~~L~l~~~~~~-~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l~l~----------------~l~ 650 (662)
+...++|+.|++++|... .+|.+++.+++|+.|+|++|.....+|. ++.++ |+.|++. .++
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 445688999999999876 6799999999999999999998777774 67777 7777664 355
Q ss_pred CccEeCCcccC
Q 044550 651 SVKRVGNEFLG 661 (662)
Q Consensus 651 ~L~~~~n~~~g 661 (662)
.|++.+|.|+|
T Consensus 708 ~L~ls~N~l~g 718 (768)
T 3rgz_A 708 EIDLSNNNLSG 718 (768)
T ss_dssp EEECCSSEEEE
T ss_pred EEECcCCcccc
Confidence 66677777765
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.65 E-value=5.2e-16 Score=159.88 Aligned_cols=197 Identities=24% Similarity=0.241 Sum_probs=121.7
Q ss_pred hhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCc-ccccccccc
Q 044550 406 FSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMR 480 (662)
Q Consensus 406 ~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~ 480 (662)
|.+++.|+.+ +|.+..+ |..++++++|++|++++|.++.+|..+. .+|++|++++|. +..+|. .+..+++|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCC
Confidence 4455555555 4556555 5567777777777777777777776655 677777777776 555554 366777777
Q ss_pred EEecCCCccc--cccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccc
Q 044550 481 SLLNDGTYLL--KYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLY 558 (662)
Q Consensus 481 ~L~l~~~~~~--~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~ 558 (662)
+|++++|... ...|..++.+ +|+.|++. .+.... .+..+. +.|+.|.+++. .+.......+.
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~--~n~l~~-l~~~~~-----~~L~~L~l~~n-------~i~~~~~~~l~ 214 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRIS--EAKLTG-IPKDLP-----ETLNELHLDHN-------KIQAIELEDLL 214 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSC-CCSCCBCC--SSBCSS-CCSSSC-----SSCSCCBCCSS-------CCCCCCTTSST
T ss_pred EEECCCCccccCCCCcccccCC-ccCEEECc--CCCCCc-cCcccc-----CCCCEEECCCC-------cCCccCHHHhc
Confidence 7777777542 1344555555 66666532 222211 111111 23444444432 11112223466
Q ss_pred ccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCC
Q 044550 559 NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNC 630 (662)
Q Consensus 559 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~ 630 (662)
.+++|+.|+++.+.... .....+..+++|+.|++++|....+|.++..+++|++|+|++|...
T Consensus 215 ~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRM---------IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp TCTTCSCCBCCSSCCCC---------CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCCc---------CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence 77888999888764311 0112345678999999999998899999999999999999998743
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.65 E-value=9e-16 Score=157.93 Aligned_cols=217 Identities=19% Similarity=0.184 Sum_probs=135.9
Q ss_pred CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccchhh
Q 044550 374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIPETL 449 (662)
Q Consensus 374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i 449 (662)
..++.+.+..+.+..++. ..|.+++.|+.+ +|.+..+ |..+..+++|++|++++|.++.+|..+
T Consensus 52 ~~l~~L~L~~n~i~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 119 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKD------------GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119 (330)
T ss_dssp TTCCEEECCSSCCCCBCT------------TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC
T ss_pred CCCeEEECCCCcCCEeCh------------hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh
Confidence 455566665555544322 124455555555 4566665 667777778888888877777777765
Q ss_pred hcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCcccc--ccCCcCCCCCCCCccCceeecCccCCCCccCcccc
Q 044550 450 CELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLK--YMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESL 526 (662)
Q Consensus 450 ~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L 526 (662)
. ++|++|++++|. +..+|. .+..+++|++|++++|.... ..|..++.+++|+.|++. .+... ..+..+.
T Consensus 120 ~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~--~n~l~-~l~~~~~-- 191 (330)
T 1xku_A 120 P--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA--DTNIT-TIPQGLP-- 191 (330)
T ss_dssp C--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC--SSCCC-SCCSSCC--
T ss_pred c--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC--CCccc-cCCcccc--
Confidence 4 677788887776 544443 46777788888887775522 445566777777777532 22221 1111111
Q ss_pred ccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCC
Q 044550 527 KNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRG 606 (662)
Q Consensus 527 ~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 606 (662)
..|+.|.+.+. .+.......+..+++|+.|+++.+.... .....+..+++|++|++++|..
T Consensus 192 ---~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 192 ---PSLTELHLDGN-------KITKVDAASLKGLNNLAKLGLSFNSISA---------VDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp ---TTCSEEECTTS-------CCCEECTGGGTTCTTCCEEECCSSCCCE---------ECTTTGGGSTTCCEEECCSSCC
T ss_pred ---ccCCEEECCCC-------cCCccCHHHhcCCCCCCEEECCCCcCce---------eChhhccCCCCCCEEECCCCcC
Confidence 34444444432 1112223456677889999998775310 0112345578999999999998
Q ss_pred CCCCcccccccCccEEEecCCCC
Q 044550 607 NIFPKWLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 607 ~~lP~~i~~l~~L~~L~L~~~~~ 629 (662)
..+|.++..+++|++|+|++|..
T Consensus 253 ~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 253 VKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp SSCCTTTTTCSSCCEEECCSSCC
T ss_pred ccCChhhccCCCcCEEECCCCcC
Confidence 89999999999999999999974
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.64 E-value=1.1e-15 Score=157.35 Aligned_cols=218 Identities=20% Similarity=0.194 Sum_probs=154.2
Q ss_pred hcCcccccccccccccCc-ccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCccccccccccEEec
Q 044550 407 SKLVFLRALRNWIREIPE-NVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLN 484 (662)
Q Consensus 407 ~~l~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l 484 (662)
..++.|.+-+|.+..+|. .+.++++|++|++++|.++.+ |..++++++|++|++++|. +..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEEC
Confidence 344445444678888865 688999999999999999987 7889999999999999998 888988765 79999999
Q ss_pred CCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCC
Q 044550 485 DGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLL 564 (662)
Q Consensus 485 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~ 564 (662)
++|......+..++.+++|++|++....... .+.....+..+++|+.|.+.+.. +..... .+ .++|+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~~l~~L~~L~l~~n~----l~~l~~----~~--~~~L~ 195 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKLSYIRIADTN----ITTIPQ----GL--PPSLT 195 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---GGBCTTGGGGCTTCCEEECCSSC----CCSCCS----SC--CTTCS
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCc---cCcChhhccCCCCcCEEECCCCc----cccCCc----cc--cccCC
Confidence 9997644444568899999999743322111 11223345556666666665431 111111 11 26888
Q ss_pred cEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCCCCCCC-CCCCcc-c
Q 044550 565 RLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVNCEHLP-PLGKLP-L 641 (662)
Q Consensus 565 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L 641 (662)
.|+++.+... ......+..+++|++|++++|....+|. ++..+++|++|+|++|... .+| .++.+| |
T Consensus 196 ~L~l~~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 196 ELHLDGNKIT---------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp EEECTTSCCC---------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred EEECCCCcCC---------ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc
Confidence 9988776431 0112456678999999999998776654 7889999999999999755 555 477788 8
Q ss_pred ceeeccccc
Q 044550 642 EKLQLKNLK 650 (662)
Q Consensus 642 ~~l~l~~l~ 650 (662)
+.|++.+..
T Consensus 266 ~~L~l~~N~ 274 (330)
T 1xku_A 266 QVVYLHNNN 274 (330)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 888776543
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=4.8e-17 Score=165.98 Aligned_cols=217 Identities=18% Similarity=0.136 Sum_probs=157.8
Q ss_pred ccccccccccc---ccCcccCCCCccceeeecC-CCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEec
Q 044550 410 VFLRALRNWIR---EIPENVGKLIHLKYLNLSE-LRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLN 484 (662)
Q Consensus 410 ~~Lrvl~~~~~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l 484 (662)
+.|..-++.+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.....+|..+.++++|++|++
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence 33444456665 5899999999999999995 7776 78999999999999999999844589999999999999999
Q ss_pred CCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCc-ccCccccccCCCCCCCCChhhhhhccccccccC
Q 044550 485 DGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ-LLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL 563 (662)
Q Consensus 485 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~-~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L 563 (662)
++|.....+|..++.+++|++|++. .+...+..+.. +..+. .|+.|.+.+.. +.......+..+. |
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~--~N~l~~~~p~~---l~~l~~~L~~L~L~~N~-------l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFD--GNRISGAIPDS---YGSFSKLFTSMTISRNR-------LTGKIPPTFANLN-L 199 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECC--SSCCEEECCGG---GGCCCTTCCEEECCSSE-------EEEECCGGGGGCC-C
T ss_pred CCCccCCcCChHHhcCCCCCeEECc--CCcccCcCCHH---HhhhhhcCcEEECcCCe-------eeccCChHHhCCc-c
Confidence 9998766899999999999999743 33332122333 34444 55555554421 1111222344444 9
Q ss_pred CcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCC-CCCcc-c
Q 044550 564 LRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-L 641 (662)
Q Consensus 564 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L 641 (662)
+.|+++.+.. .......+..+++|+.|++++|.....+..+..+++|++|+|++|.....+|. ++.+| |
T Consensus 200 ~~L~Ls~N~l---------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 270 (313)
T 1ogq_A 200 AFVDLSRNML---------EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp SEEECCSSEE---------EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred cEEECcCCcc---------cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence 9999987642 01134556778999999999998776666688899999999999987655553 66677 7
Q ss_pred ceeeccc
Q 044550 642 EKLQLKN 648 (662)
Q Consensus 642 ~~l~l~~ 648 (662)
+.|++.+
T Consensus 271 ~~L~Ls~ 277 (313)
T 1ogq_A 271 HSLNVSF 277 (313)
T ss_dssp CEEECCS
T ss_pred CEEECcC
Confidence 7666553
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.64 E-value=3e-15 Score=155.21 Aligned_cols=210 Identities=23% Similarity=0.238 Sum_probs=123.7
Q ss_pred hhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEE
Q 044550 406 FSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL 482 (662)
Q Consensus 406 ~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L 482 (662)
+..++.|+.+ +|.+..+| .+..+++|++|++++|.+..+|. +.++++|++|++++|.....+|. +..+++|++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEE
T ss_pred hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEE
Confidence 4444444444 34555543 45666666666666666666555 66666666666666653444333 6666666666
Q ss_pred ecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccccc
Q 044550 483 LNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKN 562 (662)
Q Consensus 483 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (662)
++++|.. ..++. ++.+++|++|++. .+.. ..+..+..++.|+.+.+.+. .+.... .+..+++
T Consensus 161 ~l~~~~~-~~~~~-~~~l~~L~~L~l~--~n~l-----~~~~~~~~l~~L~~L~l~~n----~l~~~~-----~~~~~~~ 222 (347)
T 4fmz_A 161 TVTESKV-KDVTP-IANLTDLYSLSLN--YNQI-----EDISPLASLTSLHYFTAYVN----QITDIT-----PVANMTR 222 (347)
T ss_dssp ECCSSCC-CCCGG-GGGCTTCSEEECT--TSCC-----CCCGGGGGCTTCCEEECCSS----CCCCCG-----GGGGCTT
T ss_pred EecCCCc-CCchh-hccCCCCCEEEcc--CCcc-----cccccccCCCccceeecccC----CCCCCc-----hhhcCCc
Confidence 6666643 23332 5556666666422 2211 11222444444444444432 111111 1567788
Q ss_pred CCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-c
Q 044550 563 LLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-L 641 (662)
Q Consensus 563 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L 641 (662)
|+.|+++.+.... ...+..+++|++|++++|....+| ++..+++|++|++++|.. ..+|.++.+| |
T Consensus 223 L~~L~l~~n~l~~-----------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L 289 (347)
T 4fmz_A 223 LNSLKIGNNKITD-----------LSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQI-SDISVLNNLSQL 289 (347)
T ss_dssp CCEEECCSSCCCC-----------CGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC-CCCGGGGGCTTC
T ss_pred CCEEEccCCccCC-----------CcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCcc-CCChhhcCCCCC
Confidence 8888888765310 112567789999999999887764 678899999999999964 3457777888 8
Q ss_pred ceeecccc
Q 044550 642 EKLQLKNL 649 (662)
Q Consensus 642 ~~l~l~~l 649 (662)
+.|++.++
T Consensus 290 ~~L~L~~n 297 (347)
T 4fmz_A 290 NSLFLNNN 297 (347)
T ss_dssp SEEECCSS
T ss_pred CEEECcCC
Confidence 88877654
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=8.3e-16 Score=165.42 Aligned_cols=215 Identities=20% Similarity=0.202 Sum_probs=115.1
Q ss_pred cCccccccccccccc-CcccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEec
Q 044550 408 KLVFLRALRNWIREI-PENVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLN 484 (662)
Q Consensus 408 ~l~~Lrvl~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l 484 (662)
+++.|.+-+|.+..+ |..+.++++|++|+|++|.++.++ ..+.++.+|++|++++|. +..+|.. +..+++|++|++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEEC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEEC
Confidence 334444445555555 455666777777777777766654 456677777777777766 5555543 566777777777
Q ss_pred CCCccccccC-CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccC
Q 044550 485 DGTYLLKYMP-IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL 563 (662)
Q Consensus 485 ~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L 563 (662)
++|.. ..+| ..+..+++|+.|++... ..... .....+..+.+|+.|.+++.. +... ..+..+.+|
T Consensus 155 ~~N~l-~~~~~~~~~~l~~L~~L~l~~~--~~l~~--i~~~~~~~l~~L~~L~L~~n~----l~~~-----~~~~~l~~L 220 (452)
T 3zyi_A 155 RNNPI-ESIPSYAFNRVPSLMRLDLGEL--KKLEY--ISEGAFEGLFNLKYLNLGMCN----IKDM-----PNLTPLVGL 220 (452)
T ss_dssp CSCCC-CEECTTTTTTCTTCCEEECCCC--TTCCE--ECTTTTTTCTTCCEEECTTSC----CSSC-----CCCTTCTTC
T ss_pred CCCCc-ceeCHhHHhcCCcccEEeCCCC--CCccc--cChhhccCCCCCCEEECCCCc----cccc-----ccccccccc
Confidence 77754 3333 35666777776653221 11100 011123334444444443320 1111 124455667
Q ss_pred CcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCCC--CCCcc
Q 044550 564 LRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLPP--LGKLP 640 (662)
Q Consensus 564 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp~--l~~Lp 640 (662)
+.|+++.+... ......+..+++|+.|++++|....+ |..+..+++|++|+|++|... .+|. ++.++
T Consensus 221 ~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~ 290 (452)
T 3zyi_A 221 EELEMSGNHFP---------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLR 290 (452)
T ss_dssp CEEECTTSCCS---------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCT
T ss_pred cEEECcCCcCc---------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhcccc
Confidence 77776655420 01123445566777777777765544 445667777777777777533 2322 34455
Q ss_pred -cceeecc
Q 044550 641 -LEKLQLK 647 (662)
Q Consensus 641 -L~~l~l~ 647 (662)
|+.|++.
T Consensus 291 ~L~~L~L~ 298 (452)
T 3zyi_A 291 YLVELHLH 298 (452)
T ss_dssp TCCEEECC
T ss_pred CCCEEEcc
Confidence 5444443
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=3.5e-16 Score=179.03 Aligned_cols=260 Identities=12% Similarity=0.100 Sum_probs=164.8
Q ss_pred CCceeEEEEecCCCCC------------------cccccc--cccccc-----------cchHhhhcCcccccc---ccc
Q 044550 373 GDNVRHLGLNFQRGAS------------------FPMSIH--RFNRFS-----------ILSELFSKLVFLRAL---RNW 418 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~------------------~~~~~~--~l~~l~-----------~~~~~~~~l~~Lrvl---~~~ 418 (662)
..+++.|.+..+.+.. +|..+. ++..|. .+|..+.+++.|+.| +|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4678999999998876 776554 544331 345567777777777 354
Q ss_pred -cc--ccCcccCCCC-------ccceeeecCCCCcccch--hhhcCCCccEEeccCCCCCccCCccccccccccEEecCC
Q 044550 419 -IR--EIPENVGKLI-------HLKYLNLSELRIERIPE--TLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDG 486 (662)
Q Consensus 419 -~~--~lp~~i~~l~-------~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~ 486 (662)
+. .+|..++.+. +|++|+|++|.++.+|. .++++++|++|++++|. +..+| .++.+++|++|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcC
Confidence 55 3676665554 88888888888888888 88888888888888887 55888 788888888888888
Q ss_pred CccccccCCcCCCCCC-CCccCceeecCccCCCCccCccccccCcccCccccccCCCC---CCCC---------Ch----
Q 044550 487 TYLLKYMPIGISRLTS-LRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGL---SNVS---------HV---- 549 (662)
Q Consensus 487 ~~~~~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~---~~~~---------~~---- 549 (662)
|.. ..+|..++.+++ |+.|++. .+... ..+..+..+.. .+|+.|.+++..-. +.+. ++
T Consensus 605 N~l-~~lp~~l~~l~~~L~~L~Ls--~N~L~-~lp~~~~~~~~-~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 605 NQI-EEIPEDFCAFTDQVEGLGFS--HNKLK-YIPNIFNAKSV-YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp SCC-SCCCTTSCEECTTCCEEECC--SSCCC-SCCSCCCTTCS-SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred Ccc-ccchHHHhhccccCCEEECc--CCCCC-cCchhhhcccc-CCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 875 478888888887 8888643 23221 22322222211 11333333221100 0000 00
Q ss_pred ------hhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhC--------CCCCCCcEEEEeecCCCCCCcccc-
Q 044550 550 ------DEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEAL--------QPPLNVEELEIESYRGNIFPKWLT- 614 (662)
Q Consensus 550 ------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--------~~~~~L~~L~l~~~~~~~lP~~i~- 614 (662)
..+....+..+++|+.|+++.+... .+...+ ..+++|+.|+|++|....+|.++.
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~----------~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPISTIILSNNLMT----------SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCCSEEECCSCCCS----------CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred ccCCcCCccCHHHHccCCCCCEEECCCCcCC----------ccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 0011111124566777777665421 011111 122389999999999888998887
Q ss_pred -cccCccEEEecCCCCCCCCC-CCCCcc-cceeeccccc
Q 044550 615 -SLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLKNLK 650 (662)
Q Consensus 615 -~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~~l~ 650 (662)
.+++|+.|+|++|.... +| .++.++ |+.|.+.+.+
T Consensus 750 ~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 89999999999997654 55 477788 8888887654
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=164.07 Aligned_cols=215 Identities=20% Similarity=0.195 Sum_probs=118.7
Q ss_pred CcccccccccccccC-cccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecC
Q 044550 409 LVFLRALRNWIREIP-ENVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLND 485 (662)
Q Consensus 409 l~~Lrvl~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~ 485 (662)
++.|.+-+|.+..++ ..+.++++|++|+|++|.++.++ ..+.++.+|++|++++|. +..+|. .+..+++|++|+++
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECC
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCC
Confidence 333433355665553 55667777777777777777664 457777777777777776 555654 46677777777777
Q ss_pred CCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550 486 GTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR 565 (662)
Q Consensus 486 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 565 (662)
+|......+..+..+++|++|++... .... ......+..+++|+.|.+.+.. +... ..+..+.+|+.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~--~~l~--~i~~~~~~~l~~L~~L~L~~n~----l~~~-----~~~~~l~~L~~ 211 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGEL--KRLS--YISEGAFEGLSNLRYLNLAMCN----LREI-----PNLTPLIKLDE 211 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCC--TTCC--EECTTTTTTCSSCCEEECTTSC----CSSC-----CCCTTCSSCCE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCC--CCcc--eeCcchhhcccccCeecCCCCc----Cccc-----cccCCCcccCE
Confidence 77653333345667777777753221 1100 0011123334444444444321 1111 12455667777
Q ss_pred EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCCC--CCCcc-c
Q 044550 566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLPP--LGKLP-L 641 (662)
Q Consensus 566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L 641 (662)
|+++.+... ......+..+++|++|++++|....+ |.++..+++|++|+|++|... .+|. ++.++ |
T Consensus 212 L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L 281 (440)
T 3zyj_A 212 LDLSGNHLS---------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHL 281 (440)
T ss_dssp EECTTSCCC---------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTC
T ss_pred EECCCCccC---------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCC
Confidence 777665320 00123455567777777777776554 345567777777777777533 2222 34455 5
Q ss_pred ceeecc
Q 044550 642 EKLQLK 647 (662)
Q Consensus 642 ~~l~l~ 647 (662)
+.|++.
T Consensus 282 ~~L~L~ 287 (440)
T 3zyj_A 282 ERIHLH 287 (440)
T ss_dssp CEEECC
T ss_pred CEEEcC
Confidence 544443
No 27
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=168.03 Aligned_cols=195 Identities=19% Similarity=0.240 Sum_probs=137.6
Q ss_pred CCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc-----------------ccch-------------------
Q 044550 142 EGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI-----------------EPFF------------------- 185 (662)
Q Consensus 142 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----------------~~F~------------------- 185 (662)
.+.+|||+.+.++|.++|..... ..++|+|+||||+ ..|+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKG----EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTT----SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccC----CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence 35699999999999999986432 5689999999999 1231
Q ss_pred --------------------------------------------------hhhhcCCCCceEEEEcccHHHHhhhCCCCe
Q 044550 186 --------------------------------------------------LRLKNGLHGSKIFVTTRNESVARMMGSTNI 215 (662)
Q Consensus 186 --------------------------------------------------~~l~~~~~gSrIivTTR~~~v~~~~~~~~~ 215 (662)
..+...++||+||||||+..++..+. ...
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~-~~~ 277 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVM-GPK 277 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCC-SCE
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcC-CCc
Confidence 11122357899999999999987754 334
Q ss_pred eeC---CCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCHHHHHHHHhhhhh---
Q 044550 216 ISI---KQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMW--- 289 (662)
Q Consensus 216 ~~l---~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~~~~--- 289 (662)
|++ ++|+.+++++||...++.. .....+.+.+|+++|+|+||||+.+|+.|+.++ .+|..+++....
T Consensus 278 ~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 278 YVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQF 350 (591)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCC
T ss_pred eEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHH
Confidence 555 5899999999999998642 123346789999999999999999999998874 357655542110
Q ss_pred ---------------hhhh----------------hhcCcccCCCCc----------hHHHHHHHHHHHHHhcCcccccc
Q 044550 290 ---------------KVLE----------------IGQGYLNAKEDE----------EMEMIGEECFNILAARSFFQEFK 328 (662)
Q Consensus 290 ---------------~~~~----------------iaeg~i~~~~~~----------~~~~~~~~~~~~L~~rsli~~~~ 328 (662)
.... +| .+...... ...+.+..++.+|+++|||+...
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la--~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLS--ILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDR 428 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGG--GCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHcc--ccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEec
Confidence 0000 21 11111000 01234678999999999998644
Q ss_pred cCCCCCeeeEEcChHHHHHHHHhhc
Q 044550 329 KNDDDDIMSCKMHDIVHDFAQFVSS 353 (662)
Q Consensus 329 ~~~~~~~~~~~mHdll~dl~~~i~~ 353 (662)
. +...+|+||++++++++....
T Consensus 429 ~---~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 429 N---GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp E---TTEEEEECCHHHHHHHHHHTG
T ss_pred C---CCccEEEEcHHHHHHHHhhhh
Confidence 2 345689999999999988743
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=1.1e-14 Score=151.05 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=75.8
Q ss_pred CCceeEEEEecCCCCCccccccccccc----------ccchHhhhcCcccccc---cccccccCcccCCCCccceeeecC
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRF----------SILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSE 439 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l----------~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~ 439 (662)
...++.+.+..+.+..++. +..+..+ ..++ .+..++.|+.+ +|.+..+|. +..+++|++|++++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTT
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCC
Confidence 4566777776666655532 3333322 1223 25566666666 356666655 66777777777777
Q ss_pred CCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550 440 LRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 440 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 507 (662)
|.....++.+.++++|++|++++|. +..++. +..+++|++|++++|.. ..++. +..+++|+.|+
T Consensus 142 n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~ 205 (347)
T 4fmz_A 142 NHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQI-EDISP-LASLTSLHYFT 205 (347)
T ss_dssp CTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCTTCCEEE
T ss_pred CCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcc-ccccc-ccCCCccceee
Confidence 7544344447777777777777776 555554 66777777777777654 33433 55556666554
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=6.4e-15 Score=158.15 Aligned_cols=201 Identities=18% Similarity=0.145 Sum_probs=113.1
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhh
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETL 449 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i 449 (662)
...++.+.+..+.+..+| . +..++.|+.+ +|.+..+| ++.+++|++|++++|.++.+| +
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~-------------l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-G-------------IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-T-------------GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred cCCCCEEEccCCCcccCh-h-------------hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c
Confidence 356777777777666553 2 3444444444 45666664 677777777777777777765 7
Q ss_pred hcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccC
Q 044550 450 CELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNL 529 (662)
Q Consensus 450 ~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L 529 (662)
+++++|++|++++|. +..+| ++.+++|++|++++|.. ..+| ++.+++|+.|++. .+...+ .+ .+..+
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~--~n~~~~----~~-~~~~l 169 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCH--LNKKIT----KL-DVTPQ 169 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECT--TCSCCC----CC-CCTTC
T ss_pred CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECC--CCCccc----cc-ccccC
Confidence 777777777777776 55565 67777777777777754 3343 6667777777532 221111 11 23344
Q ss_pred cccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC
Q 044550 530 QLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF 609 (662)
Q Consensus 530 ~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l 609 (662)
++|+.|.+++. .+... .+..+++|+.|+++.+.... . .+..+++|+.|++++|....+
T Consensus 170 ~~L~~L~ls~n----~l~~l------~l~~l~~L~~L~l~~N~l~~-----------~-~l~~l~~L~~L~Ls~N~l~~i 227 (457)
T 3bz5_A 170 TQLTTLDCSFN----KITEL------DVSQNKLLNRLNCDTNNITK-----------L-DLNQNIQLTFLDCSSNKLTEI 227 (457)
T ss_dssp TTCCEEECCSS----CCCCC------CCTTCTTCCEEECCSSCCSC-----------C-CCTTCTTCSEEECCSSCCSCC
T ss_pred CcCCEEECCCC----cccee------ccccCCCCCEEECcCCcCCe-----------e-ccccCCCCCEEECcCCccccc
Confidence 44444444432 01110 14445556666665543200 0 134445566666666655555
Q ss_pred CcccccccCccEEEecCCC
Q 044550 610 PKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 610 P~~i~~l~~L~~L~L~~~~ 628 (662)
| +..+++|++|++++|.
T Consensus 228 p--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp C--CTTCTTCSEEECCSSC
T ss_pred C--ccccCCCCEEEeeCCc
Confidence 5 4455566666666554
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.62 E-value=8e-16 Score=172.56 Aligned_cols=223 Identities=15% Similarity=0.155 Sum_probs=113.0
Q ss_pred hhhcCcccccc---ccccc-ccCcccCCCCccceeeecCCCCcccchhhhcCCC-ccEEeccCCCCCccCCccccccc--
Q 044550 405 LFSKLVFLRAL---RNWIR-EIPENVGKLIHLKYLNLSELRIERIPETLCELYN-LQKLDIRGCQYLRGLPAGIRKLM-- 477 (662)
Q Consensus 405 ~~~~l~~Lrvl---~~~~~-~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~-L~~L~l~~~~~l~~lP~~i~~L~-- 477 (662)
.+.+++.|+.+ +|.+. .+| .++.+++|++|++++|.++.+|..++++++ |++|++++|. +..+|..+..+.
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVS 402 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccC
Confidence 34455555544 34444 555 555555666666666655555555666655 6666666555 445555544433
Q ss_pred cccEEecCCCccccccCCcCC-------CCCCCCccCceeecCccCCCCccCccccccCc--------------------
Q 044550 478 NMRSLLNDGTYLLKYMPIGIS-------RLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ-------------------- 530 (662)
Q Consensus 478 ~L~~L~l~~~~~~~~~p~~i~-------~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~-------------------- 530 (662)
+|++|++++|......|..++ .+++|+.|++. .+.........+..+.+|+
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls--~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS--NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC--SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc--CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 555555555555444454444 44455555422 1211100000111111111
Q ss_pred --------ccCccccccCCCCCCCCChhhhhhcccc--ccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEE
Q 044550 531 --------LLRKCSIEGLKGLSNVSHVDEVERLQLY--NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELE 600 (662)
Q Consensus 531 --------~L~~L~i~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~ 600 (662)
+|+.|.+++. .+. . ....+. .+++|+.|+++.+... .++..+..+++|+.|+
T Consensus 481 ~~~~~~l~~L~~L~Ls~N----~l~---~-lp~~~~~~~l~~L~~L~Ls~N~l~----------~ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFN----KLT---K-LSDDFRATTLPYLVGIDLSYNSFS----------KFPTQPLNSSTLKGFG 542 (636)
T ss_dssp TEECTTGGGCCEEECCSS----CCC---B-CCGGGSTTTCTTCCEEECCSSCCS----------SCCCGGGGCSSCCEEE
T ss_pred cccccccCCccEEECcCC----cCC---c-cChhhhhccCCCcCEEECCCCCCC----------CcChhhhcCCCCCEEE
Confidence 2222222221 000 0 111222 5566777777665421 1233445578888888
Q ss_pred Eee------cC-CCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeecccccC
Q 044550 601 IES------YR-GNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLKS 651 (662)
Q Consensus 601 l~~------~~-~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l~~ 651 (662)
+++ |. ...+|.++..+++|++|+|++|.. ..+|.- -.| |+.|++.+.+-
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPN 599 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTT
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCC
Confidence 854 33 345788888888888888888875 555542 225 66666665543
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=2e-15 Score=169.00 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=64.3
Q ss_pred CCCceeEEEEecCCCCCcc-cccccccccc-----------cchHhhhcCcccccc---ccccccc-CcccCCCCcccee
Q 044550 372 FGDNVRHLGLNFQRGASFP-MSIHRFNRFS-----------ILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYL 435 (662)
Q Consensus 372 ~~~~~r~l~l~~~~~~~~~-~~~~~l~~l~-----------~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L 435 (662)
.+..++++.+..+.+..++ ..+.+++.|. ..+..|.+++.|+.+ +|.+..+ |..++++++|++|
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 4567888988888877552 2333322210 123334444444444 2344333 4445555555555
Q ss_pred eecCCCCccc-chhhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccccCCcCCCCCCCC
Q 044550 436 NLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLR 504 (662)
Q Consensus 436 ~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 504 (662)
++++|.++.+ |..++++++|++|++++|. +..++ ..+..+++|++|++++|......|..++.+++|+
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 5555555544 3445555555555555554 33321 1223355555555555544322233444555555
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=9.9e-15 Score=157.66 Aligned_cols=97 Identities=29% Similarity=0.417 Sum_probs=46.8
Q ss_pred hhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccch--------------------hhhcCCCccEEeccC
Q 044550 406 FSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPE--------------------TLCELYNLQKLDIRG 462 (662)
Q Consensus 406 ~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~--------------------~i~~L~~L~~L~l~~ 462 (662)
+.+++.|+.+ +|.+..+|. +..+++|++|++++|.+..+|. .++++++|+.|++++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS
T ss_pred hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcC
Confidence 4444444444 344444443 5555555555555555444432 144445555555555
Q ss_pred CCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550 463 CQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 463 ~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 507 (662)
|. +..++. +..+++|++|++++|... .++. ++.+++|++|+
T Consensus 187 n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~ 227 (466)
T 1o6v_A 187 NK-VSDISV-LAKLTNLESLIATNNQIS-DITP-LGILTNLDELS 227 (466)
T ss_dssp SC-CCCCGG-GGGCTTCSEEECCSSCCC-CCGG-GGGCTTCCEEE
T ss_pred Cc-CCCChh-hccCCCCCEEEecCCccc-cccc-ccccCCCCEEE
Confidence 54 444432 455555555555555432 2222 44455555554
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.61 E-value=5.5e-16 Score=163.48 Aligned_cols=101 Identities=22% Similarity=0.299 Sum_probs=83.1
Q ss_pred hcCcccccccccccccCcc-cCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccC-CccccccccccEEe
Q 044550 407 SKLVFLRALRNWIREIPEN-VGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLL 483 (662)
Q Consensus 407 ~~l~~Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~ 483 (662)
.+++.|.+-++.+..+|.. +..+++|++|++++|.++.+|+ .++++++|++|++++|. +..+ |..++.+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEE
Confidence 4444444446788889876 4779999999999999998875 89999999999999998 6555 55689999999999
Q ss_pred cCCCccccccCCc-CCCCCCCCccCce
Q 044550 484 NDGTYLLKYMPIG-ISRLTSLRTLEKF 509 (662)
Q Consensus 484 l~~~~~~~~~p~~-i~~L~~L~~L~~~ 509 (662)
+++|.. ..+|.. ++.+++|++|++.
T Consensus 124 L~~n~l-~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 124 LERNDL-SSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCCCcc-CcCCHHHhcCCCCCcEEECC
Confidence 999976 677766 5899999999743
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=4.8e-15 Score=160.09 Aligned_cols=244 Identities=25% Similarity=0.273 Sum_probs=135.6
Q ss_pred CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhh
Q 044550 374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLC 450 (662)
Q Consensus 374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~ 450 (662)
..++.+.+..+.+..+|. +..++.|+++ +|.+..+|+ ++++++|++|++++|.+..+|+ ++
T Consensus 46 ~~l~~L~l~~~~i~~l~~--------------~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~ 109 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG--------------VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LA 109 (466)
T ss_dssp HTCCEEECCSSCCCCCTT--------------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred ccccEEecCCCCCccCcc--------------hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hc
Confidence 457777777666654431 2333344444 455666655 6667777777777777666665 66
Q ss_pred cCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCc
Q 044550 451 ELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ 530 (662)
Q Consensus 451 ~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~ 530 (662)
++++|++|++++|. +..+|. +..+++|++|++++|.. ..+| .++.+++|+.|.+. +.. ..+..+.+++
T Consensus 110 ~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l~---~~~-----~~~~~~~~l~ 177 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFG---NQV-----TDLKPLANLT 177 (466)
T ss_dssp TCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEE-CCCG-GGTTCTTCSEEEEE---ESC-----CCCGGGTTCT
T ss_pred CCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCcc-CCCh-hhccCCcccEeecC---Ccc-----cCchhhccCC
Confidence 77777777777665 555554 66677777777766653 3333 35566666666431 111 0111233334
Q ss_pred ccCccccccCCCCCCCC----------------ChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCC
Q 044550 531 LLRKCSIEGLKGLSNVS----------------HVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPL 594 (662)
Q Consensus 531 ~L~~L~i~~~~~~~~~~----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 594 (662)
+|+.|.+++..- ..+. ..... ..+..+++|+.|+++.+... ....+..++
T Consensus 178 ~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-----------~~~~l~~l~ 243 (466)
T 1o6v_A 178 TLERLDISSNKV-SDISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLK-----------DIGTLASLT 243 (466)
T ss_dssp TCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC-----------CCGGGGGCT
T ss_pred CCCEEECcCCcC-CCChhhccCCCCCEEEecCCccccc--ccccccCCCCEEECCCCCcc-----------cchhhhcCC
Confidence 444443333210 0000 00000 01334556666666554320 012345567
Q ss_pred CCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeeccc--------------ccCccEeCCcc
Q 044550 595 NVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKN--------------LKSVKRVGNEF 659 (662)
Q Consensus 595 ~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~--------------l~~L~~~~n~~ 659 (662)
+|+.|++++|....+|. +..+++|++|++++|... .+|.++.++ |+.|++.+ ++.|++.+|.+
T Consensus 244 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC
T ss_pred CCCEEECCCCccccchh-hhcCCCCCEEECCCCccC-ccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcC
Confidence 88888888887766654 667888888888888644 344477777 77777643 44555666666
Q ss_pred cC
Q 044550 660 LG 661 (662)
Q Consensus 660 ~g 661 (662)
.|
T Consensus 322 ~~ 323 (466)
T 1o6v_A 322 SD 323 (466)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=156.12 Aligned_cols=232 Identities=16% Similarity=0.100 Sum_probs=160.4
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcc-cCCCCccceeeecCCCCcccch-
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPEN-VGKLIHLKYLNLSELRIERIPE- 447 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~- 447 (662)
...++.|.+..+.+..++ +..|.+++.|+.+ +|.+..+|.. +.++++|++|++++|.++.+|.
T Consensus 75 l~~L~~L~L~~n~l~~~~------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 142 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIE------------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142 (353)
T ss_dssp CTTCCEEECTTSCCCEEC------------TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS
T ss_pred CCCCCEEECCCCccCccC------------HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch
Confidence 356777777766665432 2225566666666 5788888876 8899999999999999999987
Q ss_pred -hhhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccc
Q 044550 448 -TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLES 525 (662)
Q Consensus 448 -~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~ 525 (662)
.++++++|++|++++|..+..+ |..+..+++|++|++++|......|..++.+++|++|++. .+... ..+.. .
T Consensus 143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~--~n~l~-~~~~~--~ 217 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH--MKQHI-LLLEI--F 217 (353)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE--CSCST-THHHH--H
T ss_pred hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC--CCccc-cchhh--h
Confidence 7899999999999999656666 4678999999999999998766668899999999999743 33321 11111 1
Q ss_pred cccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecC
Q 044550 526 LKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR 605 (662)
Q Consensus 526 L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 605 (662)
...+++|+.|.+++.. +................++.+++..... .......+.+.+..+++|+.|++++|.
T Consensus 218 ~~~~~~L~~L~L~~n~----l~~~~~~~l~~~~~~~~l~~l~L~~~~l-----~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 218 VDVTSSVECLELRDTD----LDTFHFSELSTGETNSLIKKFTFRNVKI-----TDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp HHHTTTEEEEEEESCB----CTTCCCC------CCCCCCEEEEESCBC-----CHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred hhhcccccEEECCCCc----cccccccccccccccchhhccccccccc-----cCcchhhhHHHHhcccCCCEEECCCCC
Confidence 2234455555555431 1110000011123345677777765532 112223445567788999999999999
Q ss_pred CCCCCccc-ccccCccEEEecCCCCC
Q 044550 606 GNIFPKWL-TSLTNLRELKLSLCVNC 630 (662)
Q Consensus 606 ~~~lP~~i-~~l~~L~~L~L~~~~~~ 630 (662)
...+|.++ ..+++|++|+|++|+..
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 99999986 69999999999999743
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=5.2e-15 Score=162.34 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=64.3
Q ss_pred CCceeEEEEecCCCCCcc-cccccc---cccc--------cchHhhhcCcccccc---cccccccCcccCCCCccceeee
Q 044550 373 GDNVRHLGLNFQRGASFP-MSIHRF---NRFS--------ILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNL 437 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~-~~~~~l---~~l~--------~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L 437 (662)
...++++.+..+.+..++ ..+..+ +.|. ..+..|.+++.|+++ +|.+..+|.. .+++|++|++
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 467888888888877654 334333 3321 235567777777777 4677778776 7888888888
Q ss_pred cCCCCcc--cchhhhcCCCccEEeccCCC
Q 044550 438 SELRIER--IPETLCELYNLQKLDIRGCQ 464 (662)
Q Consensus 438 ~~~~i~~--lp~~i~~L~~L~~L~l~~~~ 464 (662)
++|.++. +|..++++++|++|++++|.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred cCCccccccchhhhccCCcceEEEecCcc
Confidence 8888875 56788888888888887765
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=9.7e-16 Score=165.14 Aligned_cols=107 Identities=20% Similarity=0.242 Sum_probs=84.1
Q ss_pred chHhhhcCcccccc---ccccc-cc-CcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc--c
Q 044550 402 LSELFSKLVFLRAL---RNWIR-EI-PENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG--I 473 (662)
Q Consensus 402 ~~~~~~~l~~Lrvl---~~~~~-~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~--i 473 (662)
.+..|.+++.|+.+ ++.+. .+ |..+..+++|++|+|++|.++.+ |..++++++|++|++++|......|.. +
T Consensus 46 ~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 125 (455)
T 3v47_A 46 NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125 (455)
T ss_dssp CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence 35557888888887 35553 44 56788999999999999998876 778999999999999999833334554 8
Q ss_pred cccccccEEecCCCccccccCCc-CCCCCCCCccCc
Q 044550 474 RKLMNMRSLLNDGTYLLKYMPIG-ISRLTSLRTLEK 508 (662)
Q Consensus 474 ~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~ 508 (662)
..+++|++|++++|......|.. ++.+++|++|++
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 89999999999999875555655 788999999874
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=5e-15 Score=148.95 Aligned_cols=202 Identities=20% Similarity=0.144 Sum_probs=132.9
Q ss_pred hcCcccccccccccccC-cccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccC-CccccccccccEEe
Q 044550 407 SKLVFLRALRNWIREIP-ENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLL 483 (662)
Q Consensus 407 ~~l~~Lrvl~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~ 483 (662)
.+++.|.+-++.+..+| ..+..+++|++|++++|.++.+ |..+.++++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 34444444456777765 4577888888888888888877 667888888888888888645555 66788888888888
Q ss_pred cCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccC
Q 044550 484 NDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL 563 (662)
Q Consensus 484 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L 563 (662)
+++|......|..++.+++|++|++. .+......+.. +..+++|+.|.+.+. .+.......+..+++|
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~~~---~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQ--DNALQALPDDT---FRDLGNLTHLFLHGN-------RISSVPERAFRGLHSL 179 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECC--SSCCCCCCTTT---TTTCTTCCEEECCSS-------CCCEECTTTTTTCTTC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECC--CCcccccCHhH---hccCCCccEEECCCC-------cccccCHHHhcCcccc
Confidence 88887654446667888888888632 33332222222 334444555555432 1112222235567788
Q ss_pred CcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCC
Q 044550 564 LRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 564 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~ 629 (662)
+.|+++.+... ......+..+++|+.|++++|....+|. ++..+++|++|+|++|..
T Consensus 180 ~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 180 DRLLLHQNRVA---------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CEEECCSSCCC---------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CEEECCCCccc---------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 88888766431 0113345667888999998888777764 477888899999988863
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.60 E-value=2.6e-15 Score=168.05 Aligned_cols=122 Identities=22% Similarity=0.255 Sum_probs=82.0
Q ss_pred ceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCccc-chhhh
Q 044550 375 NVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERI-PETLC 450 (662)
Q Consensus 375 ~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~ 450 (662)
.++.+.+..+.+..++.. .|..++.|+.+ +|.+..+|..++.+++|++|++++|.+..+ |..++
T Consensus 255 ~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 322 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSN------------TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISAS 322 (606)
T ss_dssp EEEEEECTTCCCSSCCTT------------TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred ceeEEEeecCccCccCHH------------HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhh
Confidence 566666666655544322 24445555555 467777787788888888888888887766 45777
Q ss_pred cCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcccccc--CCcCCCCCCCCccCc
Q 044550 451 ELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYM--PIGISRLTSLRTLEK 508 (662)
Q Consensus 451 ~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~--p~~i~~L~~L~~L~~ 508 (662)
++++|++|++++|.....+|.. +..+++|++|++++|...... |..++.+++|++|++
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence 8888888888877744455553 677778888888777653332 566777777777763
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=6.8e-15 Score=162.94 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=63.3
Q ss_pred CCceeEEEEecCCCCCcc-ccccccccc---c--------cchHhhhcCcccccc---cccccccCcccCCCCccceeee
Q 044550 373 GDNVRHLGLNFQRGASFP-MSIHRFNRF---S--------ILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNL 437 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~-~~~~~l~~l---~--------~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L 437 (662)
+..++.|.+..+.+..++ ..+.++..+ . ..+..|.+++.|+.| +|.+..+|.. .+++|++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 467888888888877664 344443332 1 234556677777776 4677778776 7888888888
Q ss_pred cCCCCcccc--hhhhcCCCccEEeccCCC
Q 044550 438 SELRIERIP--ETLCELYNLQKLDIRGCQ 464 (662)
Q Consensus 438 ~~~~i~~lp--~~i~~L~~L~~L~l~~~~ 464 (662)
++|.++.+| ..++++++|++|++++|.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCCCccccCchHhhcccCcccEEecCCCc
Confidence 888887654 678888888888888775
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=5.8e-15 Score=163.13 Aligned_cols=135 Identities=21% Similarity=0.287 Sum_probs=81.4
Q ss_pred CCceeEEEEecCCCCCcc-ccccccccc---c--------cchHhhhcCcccccc---cccccccCcc-cCCCCccceee
Q 044550 373 GDNVRHLGLNFQRGASFP-MSIHRFNRF---S--------ILSELFSKLVFLRAL---RNWIREIPEN-VGKLIHLKYLN 436 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~-~~~~~l~~l---~--------~~~~~~~~l~~Lrvl---~~~~~~lp~~-i~~l~~Lr~L~ 436 (662)
...++.+.+..+.+..++ ..+.+++.+ . ..+..|.+++.|+++ +|.+..+|+. ++++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 467889998888776542 333333222 1 223345556666665 3556555544 66677777777
Q ss_pred ecCCCCcc--cchhhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550 437 LSELRIER--IPETLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 437 L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 507 (662)
+++|.++. +|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+++|++|+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 77776663 35566677777777777666455555 3566677777777776665555666666655555543
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=163.31 Aligned_cols=219 Identities=20% Similarity=0.252 Sum_probs=158.5
Q ss_pred hcCccccccccccccc-CcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEe
Q 044550 407 SKLVFLRALRNWIREI-PENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLL 483 (662)
Q Consensus 407 ~~l~~Lrvl~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~ 483 (662)
..++.|..-+|.+..+ |..+.++++|++|+|++|.++.+ |..++++++|++|++++|. +..+|.. +.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence 3444455446788877 56789999999999999999977 7789999999999999998 7788764 68999999999
Q ss_pred cCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccC
Q 044550 484 NDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL 563 (662)
Q Consensus 484 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L 563 (662)
+++|......|..++.+++|+.|++ ..+......+. .+..+++|+.|.+.+. .+. ......+..+++|
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~---~~~~l~~L~~L~l~~n----~l~---~~~~~~l~~l~~L 178 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEV--GDNDLVYISHR---AFSGLNSLEQLTLEKC----NLT---SIPTEALSHLHGL 178 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEE--CCTTCCEECTT---SSTTCTTCCEEEEESC----CCS---SCCHHHHTTCTTC
T ss_pred CCCCccccCChhHccccccCCEEEC--CCCccceeChh---hccCCCCCCEEECCCC----cCc---ccChhHhcccCCC
Confidence 9999876667788999999999974 33333211222 3445556666666653 111 2223346678899
Q ss_pred CcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCC-CCCCcccccccCccEEEecCCCCCCCCC--CCCCcc
Q 044550 564 LRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRG-NIFPKWLTSLTNLRELKLSLCVNCEHLP--PLGKLP 640 (662)
Q Consensus 564 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~-~~lP~~i~~l~~L~~L~L~~~~~~~~lp--~l~~Lp 640 (662)
+.|+++.+.... .....+..+++|+.|++++|.. ..+|.......+|++|+|++|... .+| .++.++
T Consensus 179 ~~L~l~~n~i~~---------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~ 248 (477)
T 2id5_A 179 IVLRLRHLNINA---------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV 248 (477)
T ss_dssp CEEEEESCCCCE---------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCT
T ss_pred cEEeCCCCcCcE---------eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcc
Confidence 999998875310 1123456778999999999763 446767667779999999999743 555 356677
Q ss_pred -cceeeccc
Q 044550 641 -LEKLQLKN 648 (662)
Q Consensus 641 -L~~l~l~~ 648 (662)
|+.|++.+
T Consensus 249 ~L~~L~Ls~ 257 (477)
T 2id5_A 249 YLRFLNLSY 257 (477)
T ss_dssp TCCEEECCS
T ss_pred ccCeeECCC
Confidence 77776654
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=7.5e-15 Score=170.36 Aligned_cols=82 Identities=18% Similarity=0.116 Sum_probs=50.4
Q ss_pred ccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCC-
Q 044550 557 LYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLP- 634 (662)
Q Consensus 557 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp- 634 (662)
+..+++|+.|+++.+... ......+..+++|++|++++|....+ |.++..+++|++|+|++|... .++
T Consensus 286 ~~~l~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~ 355 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKIN---------KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQD 355 (844)
T ss_dssp SSSCCCCCEEEEESCCCC---------EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCS
T ss_pred hhcCCCCCEEECCCCcCC---------CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccCh
Confidence 344566666666655320 01123455667888888888876555 667778888888888888643 333
Q ss_pred -CCCCcc-cceeeccc
Q 044550 635 -PLGKLP-LEKLQLKN 648 (662)
Q Consensus 635 -~l~~Lp-L~~l~l~~ 648 (662)
.++.+| |+.|++.+
T Consensus 356 ~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRD 371 (844)
T ss_dssp SCSCSCCCCCEEEEET
T ss_pred hhhcCCCCCCEEECCC
Confidence 256667 77766653
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=6.7e-16 Score=157.09 Aligned_cols=209 Identities=15% Similarity=0.099 Sum_probs=151.1
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccC---CccccccccccEEecCCCcccc
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGL---PAGIRKLMNMRSLLNDGTYLLK 491 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~l---P~~i~~L~~L~~L~l~~~~~~~ 491 (662)
++.++.+|..+. .+|++|++++|.++.+|.. +.++++|++|++++|. +..+ |..+..+++|++|++++|.. .
T Consensus 16 ~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~ 91 (306)
T 2z66_A 16 SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGV-I 91 (306)
T ss_dssp SSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSE-E
T ss_pred CCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCcc-c
Confidence 456778887664 6899999999999999886 6899999999999998 6544 67778899999999999975 6
Q ss_pred ccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEec
Q 044550 492 YMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFG 571 (662)
Q Consensus 492 ~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 571 (662)
.+|..+..+++|++|++. .+...... ....+..+++|+.|.+.+.. ........+..+++|+.|+++.+
T Consensus 92 ~l~~~~~~l~~L~~L~l~--~n~l~~~~--~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQ--HSNLKQMS--EFSVFLSLRNLIYLDISHTH-------TRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp EEEEEEETCTTCCEEECT--TSEEESST--TTTTTTTCTTCCEEECTTSC-------CEECSTTTTTTCTTCCEEECTTC
T ss_pred cChhhcCCCCCCCEEECC--CCcccccc--cchhhhhccCCCEEECCCCc-------CCccchhhcccCcCCCEEECCCC
Confidence 788889999999999743 23221111 11335556666666665531 11222334667789999999765
Q ss_pred CCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCC-CCCCcc-cceeecc
Q 044550 572 GDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLK 647 (662)
Q Consensus 572 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~ 647 (662)
.. ........+..+++|++|++++|....+ |.++..+++|++|+|++|......+ .++.+| |+.|++.
T Consensus 161 ~l--------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 161 SF--------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp EE--------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred cc--------ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 42 1112344567789999999999987766 6788899999999999997543222 356677 7777664
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=3e-15 Score=150.59 Aligned_cols=207 Identities=20% Similarity=0.183 Sum_probs=147.8
Q ss_pred ccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCcccccc-
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLKYM- 493 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~- 493 (662)
+.+..+|..+ .++|++|++++|.++.+|. .+.++++|++|++++|. +..+ |..+..+++|++|++++|..+..+
T Consensus 21 ~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 21 QGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp SCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred CCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccC
Confidence 4567777655 4799999999999998875 69999999999999998 5555 778999999999999999744555
Q ss_pred CCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCC
Q 044550 494 PIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGD 573 (662)
Q Consensus 494 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 573 (662)
|..++.+++|++|++ .++......+.. +..+++|+.|.+.+.. +.......+..+++|+.|+++.+..
T Consensus 98 ~~~~~~l~~L~~L~l--~~n~l~~~~~~~---~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 98 PATFHGLGRLHTLHL--DRCGLQELGPGL---FRGLAALQYLYLQDNA-------LQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp TTTTTTCTTCCEEEC--TTSCCCCCCTTT---TTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred HHHhcCCcCCCEEEC--CCCcCCEECHhH---hhCCcCCCEEECCCCc-------ccccCHhHhccCCCccEEECCCCcc
Confidence 678999999999974 333332222333 4445556665555431 1112223466788999999987753
Q ss_pred CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCCC--CCCcc-cceeeccc
Q 044550 574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLPP--LGKLP-LEKLQLKN 648 (662)
Q Consensus 574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L~~l~l~~ 648 (662)
.. .....+..+++|+.|++++|....+ |.++..+++|++|+|++|.... +|. ++.+| |+.+++.+
T Consensus 166 ~~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 166 SS---------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLND 234 (285)
T ss_dssp CE---------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCS
T ss_pred cc---------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccC
Confidence 10 0112356679999999999987765 7888899999999999997443 332 55566 66555543
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=8.9e-16 Score=156.55 Aligned_cols=226 Identities=20% Similarity=0.188 Sum_probs=152.5
Q ss_pred Cccccccccccc--ccCcccC-------CCCccceeeecCCCCc-ccchhh--hcCCCccEEeccCCCCCccCCcccccc
Q 044550 409 LVFLRALRNWIR--EIPENVG-------KLIHLKYLNLSELRIE-RIPETL--CELYNLQKLDIRGCQYLRGLPAGIRKL 476 (662)
Q Consensus 409 l~~Lrvl~~~~~--~lp~~i~-------~l~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~l~~~~~l~~lP~~i~~L 476 (662)
++.|.+-++.+. .+|..+. .+.+|++|++++|.++ .+|..+ +++++|++|++++|. +..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence 444444455553 3555554 6889999999999987 678876 889999999999988 66668878877
Q ss_pred -----ccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCcccc--ccCcccCccccccCCCCCCCCCh
Q 044550 477 -----MNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESL--KNLQLLRKCSIEGLKGLSNVSHV 549 (662)
Q Consensus 477 -----~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L--~~L~~L~~L~i~~~~~~~~~~~~ 549 (662)
++|++|++++|......|..++.+++|++|++. .+...+. ...+..+ ..+++|+.|.+.+. .+...
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~~-~~~~~~~~~~~l~~L~~L~L~~N----~l~~~ 216 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS--DNPELGE-RGLISALCPLKFPTLQVLALRNA----GMETP 216 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC--SCTTCHH-HHHHHHSCTTSCTTCCEEECTTS----CCCCH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC--CCCcCcc-hHHHHHHHhccCCCCCEEECCCC----cCcch
Confidence 899999999998755555788899999998743 3322100 0011122 45566666666653 22333
Q ss_pred hhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550 550 DEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 550 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~ 629 (662)
.......+..+++|+.|+++.+...... ....+..+++|+.|++++|....+|.++. ++|++|+|++|..
T Consensus 217 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 217 SGVCSALAAARVQLQGLDLSHNSLRDAA--------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp HHHHHHHHHTTCCCSEEECTTSCCCSSC--------CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC
T ss_pred HHHHHHHHhcCCCCCEEECCCCcCCccc--------chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCC
Confidence 3333333456789999999877531100 01233446899999999999999999887 8999999999974
Q ss_pred CCCCCCCCCcc-cceeecccccCccEeCCcccC
Q 044550 630 CEHLPPLGKLP-LEKLQLKNLKSVKRVGNEFLG 661 (662)
Q Consensus 630 ~~~lp~l~~Lp-L~~l~l~~l~~L~~~~n~~~g 661 (662)
. .+|.++.+| |+.|+ +.+|.|++
T Consensus 287 ~-~~p~~~~l~~L~~L~--------L~~N~l~~ 310 (312)
T 1wwl_A 287 D-RNPSPDELPQVGNLS--------LKGNPFLD 310 (312)
T ss_dssp C-SCCCTTTSCEEEEEE--------CTTCTTTC
T ss_pred C-CChhHhhCCCCCEEe--------ccCCCCCC
Confidence 4 446667777 55554 45666665
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=2.1e-15 Score=168.07 Aligned_cols=119 Identities=20% Similarity=0.274 Sum_probs=88.7
Q ss_pred cCcccccccccccccCcc-cCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEec
Q 044550 408 KLVFLRALRNWIREIPEN-VGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLN 484 (662)
Q Consensus 408 ~l~~Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l 484 (662)
+++.|..-++.+..+|.. +..+++|++|+|++|.++.+|+ .++++++|++|++++|. +..+|. .++.+++|++|++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEe
Confidence 333333335778888876 4679999999999999998865 89999999999999998 666654 5799999999999
Q ss_pred CCCccccccCCc-CCCCCCCCccCceeecCccCCCCccCccccccCc
Q 044550 485 DGTYLLKYMPIG-ISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ 530 (662)
Q Consensus 485 ~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~ 530 (662)
++|.. ..+|.. ++.+++|++|++. ++......+..+..+.+|.
T Consensus 131 ~~n~l-~~l~~~~~~~l~~L~~L~Ls--~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 131 ERNDL-SSLPRGIFHNTPKLTTLSMS--NNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp CSSCC-CCCCTTTTTTCTTCCEEECC--SSCCCBCCTTTTTTCTTCC
T ss_pred eCCCC-CCCCHHHhccCCCCCEEEee--CCcCCCCChhhhhcCCcCc
Confidence 99976 567766 5899999999743 3333333333444444443
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.58 E-value=8.9e-15 Score=162.40 Aligned_cols=123 Identities=25% Similarity=0.255 Sum_probs=74.2
Q ss_pred CCCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccC-cccCCCCccceeeecCCCCcccc-
Q 044550 372 FGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIP-ENVGKLIHLKYLNLSELRIERIP- 446 (662)
Q Consensus 372 ~~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp- 446 (662)
.+..+++|.+..+.+..++.. .|.+++.|+++ +|.+..++ ..+.++++|++|+|++|.++.+|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSY------------SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTT------------TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred ccccccEEEccCCccCccChh------------HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 456788888888877654321 14444555554 34555553 34566666666666666666554
Q ss_pred hhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCcccc-ccCCcCCCCCCCCccC
Q 044550 447 ETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLK-YMPIGISRLTSLRTLE 507 (662)
Q Consensus 447 ~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~ 507 (662)
..++++++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|+
T Consensus 94 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred hhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence 456666666666666665 555544 46666666666666665432 3566666666666665
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=4.2e-15 Score=168.71 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=76.9
Q ss_pred CCCceeEEEEecCCCCCccc-cccccccc---c--------cchHhhhcCcccccc---cccccccCc-ccCCCCcccee
Q 044550 372 FGDNVRHLGLNFQRGASFPM-SIHRFNRF---S--------ILSELFSKLVFLRAL---RNWIREIPE-NVGKLIHLKYL 435 (662)
Q Consensus 372 ~~~~~r~l~l~~~~~~~~~~-~~~~l~~l---~--------~~~~~~~~l~~Lrvl---~~~~~~lp~-~i~~l~~Lr~L 435 (662)
.+..+++|.+..+.+..++. .+.++..+ . ..+..|.+++.|+++ +|.+..+|. .|+++++|++|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 35789999999888876653 23333222 1 224445555566655 345556654 36666666666
Q ss_pred eecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcC--CCCCCCCccC
Q 044550 436 NLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI--SRLTSLRTLE 507 (662)
Q Consensus 436 ~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i--~~L~~L~~L~ 507 (662)
++++|.+..+| ..++++++|++|++++|......|..++++++|++|++++|......|..+ ..+++|+.|+
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 66666666554 356666666666666665333334455666666666666665422222222 2345566654
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.57 E-value=5.4e-15 Score=159.09 Aligned_cols=206 Identities=21% Similarity=0.253 Sum_probs=150.6
Q ss_pred ccccccCcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCccccccC
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLKYMP 494 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p 494 (662)
..+..+|..+. .+|++|+|++|.++.+ |..+.++++|++|++++|. +..+ |..+..+++|++|++++|.. ..+|
T Consensus 64 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~ 139 (452)
T 3zyi_A 64 RGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWL-TVIP 139 (452)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC-SBCC
T ss_pred CCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcC-CccC
Confidence 46777887765 6899999999999987 5689999999999999998 5555 46889999999999999976 5555
Q ss_pred C-cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCC
Q 044550 495 I-GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGD 573 (662)
Q Consensus 495 ~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 573 (662)
. .++.+++|++|++. .+....... ..+..+++|+.|.+.++.. ........+.++.+|+.|+++.+..
T Consensus 140 ~~~~~~l~~L~~L~L~--~N~l~~~~~---~~~~~l~~L~~L~l~~~~~------l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLR--NNPIESIPS---YAFNRVPSLMRLDLGELKK------LEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp TTTSSSCTTCCEEECC--SCCCCEECT---TTTTTCTTCCEEECCCCTT------CCEECTTTTTTCTTCCEEECTTSCC
T ss_pred hhhhcccCCCCEEECC--CCCcceeCH---hHHhcCCcccEEeCCCCCC------ccccChhhccCCCCCCEEECCCCcc
Confidence 4 58899999999743 333321112 2344556666666665421 1122233467788999999987753
Q ss_pred CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCC-CCCCcc-cceeeccc
Q 044550 574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLKN 648 (662)
Q Consensus 574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~~ 648 (662)
. .+..+..+++|+.|++++|.+..+ |.++..+++|++|+|++|......| .++.+| |+.|++.+
T Consensus 209 ~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 209 K-----------DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp S-----------SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred c-----------ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 1 123467789999999999997766 6778899999999999998554322 366677 77776653
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.56 E-value=1.9e-14 Score=157.86 Aligned_cols=127 Identities=18% Similarity=0.138 Sum_probs=82.1
Q ss_pred eEEEEecCCCCCcccccc-ccccc-------c-cchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCc
Q 044550 377 RHLGLNFQRGASFPMSIH-RFNRF-------S-ILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIE 443 (662)
Q Consensus 377 r~l~l~~~~~~~~~~~~~-~l~~l-------~-~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~ 443 (662)
+.+.+..+.+..+|..+. +++.+ . ..+..|..++.|+++ +|.+..+ |..++++++|++|+|++|.++
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 456666666666664332 33322 1 334556777777776 4566665 567777888888888888877
Q ss_pred ccchhhhcCCCccEEeccCCCCCc-cCCccccccccccEEecCCCccccccCCcCCCCCCC--CccCc
Q 044550 444 RIPETLCELYNLQKLDIRGCQYLR-GLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSL--RTLEK 508 (662)
Q Consensus 444 ~lp~~i~~L~~L~~L~l~~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~ 508 (662)
.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.... ..++.+++| +.|++
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEe
Confidence 77776 77888888888777322 356777888888888887775422 335555566 66653
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.56 E-value=1.9e-14 Score=160.89 Aligned_cols=120 Identities=19% Similarity=0.182 Sum_probs=85.2
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccc-h
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIP-E 447 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~ 447 (662)
...+++|.+..+.+..++ +..|.+++.|+.+ +|.+..+ |..|+++++|++|++++|.++.+| .
T Consensus 55 l~~L~~L~Ls~n~l~~i~------------~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 122 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIE------------DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122 (606)
T ss_dssp CTTCCEEECTTCCCCEEC------------TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS
T ss_pred CccCcEEeCCCCcccccC------------HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccc
Confidence 457888888777666442 2225566666666 4667666 677888888888888888887776 5
Q ss_pred hhhcCCCccEEeccCCCCCc-cCCccccccccccEEecCCCccccccCCcCCCCCCCC
Q 044550 448 TLCELYNLQKLDIRGCQYLR-GLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLR 504 (662)
Q Consensus 448 ~i~~L~~L~~L~l~~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 504 (662)
.++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|+
T Consensus 123 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 78888888888888887322 4688888888888888888866444455566666554
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=8.2e-15 Score=157.06 Aligned_cols=206 Identities=19% Similarity=0.267 Sum_probs=150.7
Q ss_pred ccccccCcccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccccC
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYMP 494 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p 494 (662)
..+..+|..+. .++++|+|++|.++.++ ..+.++++|++|++++|. +..++ ..+..+++|++|++++|.. ..+|
T Consensus 53 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~ 128 (440)
T 3zyj_A 53 KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRL-TTIP 128 (440)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCC-SSCC
T ss_pred CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcC-CeeC
Confidence 46778888775 78999999999999886 689999999999999998 65555 6789999999999999976 5565
Q ss_pred C-cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCC
Q 044550 495 I-GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGD 573 (662)
Q Consensus 495 ~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 573 (662)
. .+..+++|++|++. ++........ .+..+++|+.|.+.+... ........+.++++|+.|+++.+..
T Consensus 129 ~~~~~~l~~L~~L~L~--~N~i~~~~~~---~~~~l~~L~~L~l~~~~~------l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLR--NNPIESIPSY---AFNRIPSLRRLDLGELKR------LSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp TTTSCSCSSCCEEECC--SCCCCEECTT---TTTTCTTCCEEECCCCTT------CCEECTTTTTTCSSCCEEECTTSCC
T ss_pred HhHhhccccCceeeCC--CCcccccCHH---HhhhCcccCEeCCCCCCC------cceeCcchhhcccccCeecCCCCcC
Confidence 4 68999999999743 3333211122 344555666666665411 1122233467789999999987753
Q ss_pred CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCC-CCCCcc-cceeeccc
Q 044550 574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLKN 648 (662)
Q Consensus 574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~~ 648 (662)
. .+..+..+++|+.|++++|....+ |.++..+++|++|+|++|......| .++.+| |+.|++.+
T Consensus 198 ~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 198 R-----------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp S-----------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred c-----------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 1 123467789999999999987766 6788899999999999997553222 356677 77776643
No 54
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=2.8e-14 Score=158.00 Aligned_cols=126 Identities=19% Similarity=0.173 Sum_probs=92.9
Q ss_pred eeEEEEecCCCCCccccc-cccccc-------c-cchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCC
Q 044550 376 VRHLGLNFQRGASFPMSI-HRFNRF-------S-ILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRI 442 (662)
Q Consensus 376 ~r~l~l~~~~~~~~~~~~-~~l~~l-------~-~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i 442 (662)
.+.+.+..+.+..+|..+ .+++.+ . ..+..|.+++.|++| +|.+..+ |..+.++++|++|+|++|.+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 377888888887777543 334433 1 334567888888887 4677777 66788899999999999999
Q ss_pred cccchhhhcCCCccEEeccCCCCCccC--CccccccccccEEecCCCccccccCCcCCCCCCC--CccC
Q 044550 443 ERIPETLCELYNLQKLDIRGCQYLRGL--PAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSL--RTLE 507 (662)
Q Consensus 443 ~~lp~~i~~L~~L~~L~l~~~~~l~~l--P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~ 507 (662)
+.+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.... ..++.+++| ++|+
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCIL 175 (562)
T ss_dssp CEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEE
T ss_pred CccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEE
Confidence 999887 89999999999988 6554 4789999999999999886532 234444555 5554
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=167.33 Aligned_cols=266 Identities=19% Similarity=0.212 Sum_probs=139.1
Q ss_pred CCCceeEEEEecCCCCCcc-cccccccccccchHhhhcCcccccc---cc-ccccc-CcccCCCCccceeeecCCCCccc
Q 044550 372 FGDNVRHLGLNFQRGASFP-MSIHRFNRFSILSELFSKLVFLRAL---RN-WIREI-PENVGKLIHLKYLNLSELRIERI 445 (662)
Q Consensus 372 ~~~~~r~l~l~~~~~~~~~-~~~~~l~~l~~~~~~~~~l~~Lrvl---~~-~~~~l-p~~i~~l~~Lr~L~L~~~~i~~l 445 (662)
.+..++.|.+..+.+..++ .. |.+++.|++| +| .+..+ |..|.++++|++|+|++|.+..+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~-------------~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASS-------------FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSS-------------CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred CCCCcCEEECCCCcCCccChhH-------------CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 5788999999988876442 22 3444444444 22 33344 45556666666666666665544
Q ss_pred -chhhhcCCCccEEeccCCCCCccCCcc--ccccccccEEecCCCccccccC-CcCCCCCCCCccCceeecCccCCCCcc
Q 044550 446 -PETLCELYNLQKLDIRGCQYLRGLPAG--IRKLMNMRSLLNDGTYLLKYMP-IGISRLTSLRTLEKFVVGGGVDGGGTC 521 (662)
Q Consensus 446 -p~~i~~L~~L~~L~l~~~~~l~~lP~~--i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~ 521 (662)
|..++++++|++|++++|.....+|.. +.++++|++|++++|......| ..++++++|++|++ .++......+.
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L--s~N~i~~~~~~ 166 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF--SSNQIFLVCEH 166 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE--ESSCCCCCCSG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC--CCCcCCeeCHH
Confidence 555666666666666666532334443 5566666666666665422222 34556666666642 22222111122
Q ss_pred Ccccc--ccCc---------------------------ccCccccccCCCCCCC-CCh----------------------
Q 044550 522 RLESL--KNLQ---------------------------LLRKCSIEGLKGLSNV-SHV---------------------- 549 (662)
Q Consensus 522 ~l~~L--~~L~---------------------------~L~~L~i~~~~~~~~~-~~~---------------------- 549 (662)
.+..+ .+|+ .|+.|.+++..-.... ..+
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 22222 1111 1222222221000000 000
Q ss_pred ------hhhhhccccc--cccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCcc
Q 044550 550 ------DEVERLQLYN--KKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLR 620 (662)
Q Consensus 550 ------~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~ 620 (662)
.......+.. ..+|+.|+++.+... ......+..+++|+.|++++|....+ |..+..+++|+
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF---------SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC---------EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCccc---------ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 0000001111 245666666544320 00123456678999999999987655 55778999999
Q ss_pred EEEecCCCCCCCCC-CCCCcc-cceeecc----------------cccCccEeCCcccC
Q 044550 621 ELKLSLCVNCEHLP-PLGKLP-LEKLQLK----------------NLKSVKRVGNEFLG 661 (662)
Q Consensus 621 ~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~----------------~l~~L~~~~n~~~g 661 (662)
+|+|++|......| .++.+| |+.|.+. +++.|++.+|.+++
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 99999997654333 467777 7777664 45556666676654
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=6.2e-14 Score=155.17 Aligned_cols=220 Identities=20% Similarity=0.146 Sum_probs=128.7
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcC
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL 452 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 452 (662)
...++.|.+..+.+..+|.. +.+++.|.+-+|.+..+|. .+++|++|++++|.++.+|. .+
T Consensus 60 ~~~L~~L~L~~N~l~~lp~~-------------l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l 120 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPAL-------------PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LP 120 (622)
T ss_dssp CTTCSEEEECSCCCSCCCCC-------------CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CC
T ss_pred CCCCcEEEecCCCCCCCCCc-------------CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CC
Confidence 46777777777766655431 3444445444678888876 67899999999999998887 67
Q ss_pred CCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCccc
Q 044550 453 YNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLL 532 (662)
Q Consensus 453 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L 532 (662)
.+|++|++++|. +..+|.. +++|++|++++|.. ..+|..+ ++|+.|++. ++... ..+ ..+++|
T Consensus 121 ~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~~~---~~L~~L~L~--~N~l~-~l~------~~~~~L 183 (622)
T 3g06_A 121 SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPALP---SELCKLWAY--NNQLT-SLP------MLPSGL 183 (622)
T ss_dssp TTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCCCC---TTCCEEECC--SSCCS-CCC------CCCTTC
T ss_pred CCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCCcc---CCCCEEECC--CCCCC-CCc------ccCCCC
Confidence 889999999887 7788874 48899999998865 5666544 344444321 11111 111 111222
Q ss_pred CccccccC--CCCCCCCChhhhhhcccc---------ccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEE
Q 044550 533 RKCSIEGL--KGLSNVSHVDEVERLQLY---------NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEI 601 (662)
Q Consensus 533 ~~L~i~~~--~~~~~~~~~~~~~~~~l~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l 601 (662)
+.|.+++. ..++.. ...+....+. ..++|+.|+++.+.... +. ..+++|++|++
T Consensus 184 ~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-----------lp--~~l~~L~~L~L 248 (622)
T 3g06_A 184 QELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-----------LP--VLPSELKELMV 248 (622)
T ss_dssp CEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-----------CC--CCCTTCCEEEC
T ss_pred cEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-----------CC--CCCCcCcEEEC
Confidence 22222221 110000 0011111111 12567777776654210 00 34577888888
Q ss_pred eecCCCCCCcccccccCccEEEecCCCCCCCCCC-CCCcc-cceeecc
Q 044550 602 ESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLK 647 (662)
Q Consensus 602 ~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l~l~ 647 (662)
++|.+..+|. .+++|++|+|++|... .+|. ++.+| |+.|++.
T Consensus 249 s~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 249 SGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 8888777776 5678888888888643 4442 44455 4444443
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.54 E-value=6e-14 Score=144.36 Aligned_cols=248 Identities=16% Similarity=0.129 Sum_probs=169.0
Q ss_pred CCceeEEEEecCCCCCcc-cccccccc---cc--------cchHhhhcCcccccc---cccccccCcccCCCCccceeee
Q 044550 373 GDNVRHLGLNFQRGASFP-MSIHRFNR---FS--------ILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNL 437 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~-~~~~~l~~---l~--------~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L 437 (662)
...++.+.+..+.+..++ ..+.++.. +. ..+..+.+++.|+.+ +|.+..+|..+. .+|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 467888999888877553 23444333 21 235567778888887 578889988876 89999999
Q ss_pred cCCCCcccch-hhhcCCCccEEeccCCCCCc---cCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecC
Q 044550 438 SELRIERIPE-TLCELYNLQKLDIRGCQYLR---GLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGG 513 (662)
Q Consensus 438 ~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~---~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~ 513 (662)
++|.++.+|. .+.++++|++|++++|. +. ..|..+..+ +|++|++++|.. ..+|..+. ++|++|++ ..+
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~l~~~~~--~~L~~L~l--~~n 203 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKL-TGIPKDLP--ETLNELHL--DHN 203 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBC-SSCCSSSC--SSCSCCBC--CSS
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCC-CccCcccc--CCCCEEEC--CCC
Confidence 9999999876 48999999999999998 43 456777777 999999999975 66887665 78998874 333
Q ss_pred ccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCC
Q 044550 514 GVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPP 593 (662)
Q Consensus 514 ~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 593 (662)
......+. .+..+++|+.|.+.+.. +.......+..+++|+.|+++.+... .+...+..+
T Consensus 204 ~i~~~~~~---~l~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~----------~lp~~l~~l 263 (332)
T 2ft3_A 204 KIQAIELE---DLLRYSKLYRLGLGHNQ-------IRMIENGSLSFLPTLRELHLDNNKLS----------RVPAGLPDL 263 (332)
T ss_dssp CCCCCCTT---SSTTCTTCSCCBCCSSC-------CCCCCTTGGGGCTTCCEEECCSSCCC----------BCCTTGGGC
T ss_pred cCCccCHH---HhcCCCCCCEEECCCCc-------CCcCChhHhhCCCCCCEEECCCCcCe----------ecChhhhcC
Confidence 33222223 34455556666665431 11122234667889999999887531 223345667
Q ss_pred CCCcEEEEeecCCCCCCcccc-------cccCccEEEecCCCCCC-CCC--CCCCcc-cceeecccc
Q 044550 594 LNVEELEIESYRGNIFPKWLT-------SLTNLRELKLSLCVNCE-HLP--PLGKLP-LEKLQLKNL 649 (662)
Q Consensus 594 ~~L~~L~l~~~~~~~lP~~i~-------~l~~L~~L~L~~~~~~~-~lp--~l~~Lp-L~~l~l~~l 649 (662)
++|+.|++++|....+|.... .+++|+.|++++|.... .++ .+..++ |+.+.+.+.
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 899999999999887764322 25789999999998441 222 144555 565555543
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.54 E-value=4.6e-14 Score=151.44 Aligned_cols=200 Identities=19% Similarity=0.177 Sum_probs=152.0
Q ss_pred hhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEE
Q 044550 406 FSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL 482 (662)
Q Consensus 406 ~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L 482 (662)
+.+++.|+.+ ++.+..+| .++.+++|++|++++|.++.+| ++++++|++|++++|. +..+| ++.+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEE
Confidence 4455556655 57788887 7899999999999999999986 9999999999999998 77776 8899999999
Q ss_pred ecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccccc
Q 044550 483 LNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKN 562 (662)
Q Consensus 483 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (662)
++++|.. ..+| ++.+++|+.|++ ..+.... + .+..++.|+.|.+..... ... ..+..+++
T Consensus 112 ~L~~N~l-~~l~--~~~l~~L~~L~l--~~N~l~~-----l-~l~~l~~L~~L~l~~n~~---~~~------~~~~~l~~ 171 (457)
T 3bz5_A 112 NCDTNKL-TKLD--VSQNPLLTYLNC--ARNTLTE-----I-DVSHNTQLTELDCHLNKK---ITK------LDVTPQTQ 171 (457)
T ss_dssp ECCSSCC-SCCC--CTTCTTCCEEEC--TTSCCSC-----C-CCTTCTTCCEEECTTCSC---CCC------CCCTTCTT
T ss_pred ECCCCcC-Ceec--CCCCCcCCEEEC--CCCccce-----e-ccccCCcCCEEECCCCCc---ccc------cccccCCc
Confidence 9999975 5565 889999999964 3333311 1 255666676666665421 111 13667789
Q ss_pred CCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-c
Q 044550 563 LLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-L 641 (662)
Q Consensus 563 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L 641 (662)
|+.|+++.+.... +. +..+++|+.|++++|....+| +..+++|++|++++|.... +| ++.+| |
T Consensus 172 L~~L~ls~n~l~~-----------l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L 235 (457)
T 3bz5_A 172 LTTLDCSFNKITE-----------LD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID-VTPLTQL 235 (457)
T ss_dssp CCEEECCSSCCCC-----------CC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTC
T ss_pred CCEEECCCCccce-----------ec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC-ccccCCC
Confidence 9999998875310 11 567789999999999988774 7789999999999998554 66 77777 7
Q ss_pred ceeecc
Q 044550 642 EKLQLK 647 (662)
Q Consensus 642 ~~l~l~ 647 (662)
+.|.+.
T Consensus 236 ~~L~l~ 241 (457)
T 3bz5_A 236 TYFDCS 241 (457)
T ss_dssp SEEECC
T ss_pred CEEEee
Confidence 777765
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=2e-14 Score=143.81 Aligned_cols=200 Identities=18% Similarity=0.169 Sum_probs=128.7
Q ss_pred cCcccccccccccccCc-ccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCC-ccccccccccEEec
Q 044550 408 KLVFLRALRNWIREIPE-NVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLN 484 (662)
Q Consensus 408 ~l~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l 484 (662)
.++.|.+-++.+..++. .+.++++|++|++++|.++.+|. .+.++++|++|++++|. +..+| ..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEEC
Confidence 44555555677777765 78889999999999999888765 68889999999999988 55544 67888999999999
Q ss_pred CCCccccccCCcCCCCCCCCccCceeecCccCC-CCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccC
Q 044550 485 DGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDG-GGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL 563 (662)
Q Consensus 485 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L 563 (662)
++|......+..++.+++|++|++. .+.... ..+. .+..+++|+.|.+++. .+. ......+..+.+|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~--~n~l~~~~l~~---~~~~l~~L~~L~Ls~N----~l~---~~~~~~~~~l~~L 175 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVA--HNLIQSFKLPE---YFSNLTNLEHLDLSSN----KIQ---SIYCTDLRVLHQM 175 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECC--SSCCCCCCCCG---GGGGCTTCCEEECCSS----CCC---EECGGGGHHHHTC
T ss_pred CCCCccccCchhcccCCCCCEEECc--CCccceecCch---hhccCCCCCEEECCCC----CCC---cCCHHHhhhhhhc
Confidence 9887644334468888888888643 333211 1122 3444555555555543 111 1112233344445
Q ss_pred C----cEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCccc-ccccCccEEEecCCCCC
Q 044550 564 L----RLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL-TSLTNLRELKLSLCVNC 630 (662)
Q Consensus 564 ~----~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i-~~l~~L~~L~L~~~~~~ 630 (662)
+ .|+++.+... ..........+|+.|++++|....+|.++ ..+++|++|+|++|+..
T Consensus 176 ~~l~l~L~ls~n~l~----------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 176 PLLNLSLDLSLNPMN----------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TTCCEEEECCSSCCC----------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccceeeecCCCccc----------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 5 5555544320 01112223347888888888887777664 57888888888888744
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=4.6e-14 Score=143.45 Aligned_cols=190 Identities=21% Similarity=0.206 Sum_probs=129.1
Q ss_pred hhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550 406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND 485 (662)
Q Consensus 406 ~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~ 485 (662)
+.+++.|.+-++.+..+| .+..+++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECC
Confidence 444444444456677765 57788888888888888888877 8888888888888887 77765 58888888888888
Q ss_pred CCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550 486 GTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR 565 (662)
Q Consensus 486 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 565 (662)
+|.. ..+|. ++.+++|+.|++. .+... .+..+..+++|+.|.+.+. .+.... .+..+++|+.
T Consensus 116 ~n~l-~~~~~-l~~l~~L~~L~l~--~n~l~-----~~~~l~~l~~L~~L~l~~n----~l~~~~-----~l~~l~~L~~ 177 (308)
T 1h6u_A 116 STQI-TDVTP-LAGLSNLQVLYLD--LNQIT-----NISPLAGLTNLQYLSIGNA----QVSDLT-----PLANLSKLTT 177 (308)
T ss_dssp TSCC-CCCGG-GTTCTTCCEEECC--SSCCC-----CCGGGGGCTTCCEEECCSS----CCCCCG-----GGTTCTTCCE
T ss_pred CCCC-CCchh-hcCCCCCCEEECC--CCccC-----cCccccCCCCccEEEccCC----cCCCCh-----hhcCCCCCCE
Confidence 8865 45554 7788888888633 23221 1222555666666666553 112111 1566778888
Q ss_pred EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550 566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~ 629 (662)
|+++.+.... ...+..+++|+.|++++|....+| .+..+++|++|+|++|..
T Consensus 178 L~l~~n~l~~-----------~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 178 LKADDNKISD-----------ISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EECCSSCCCC-----------CGGGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred EECCCCccCc-----------ChhhcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 8887664310 111456778888888888877776 367888888888888873
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=6.8e-14 Score=139.40 Aligned_cols=172 Identities=22% Similarity=0.232 Sum_probs=89.1
Q ss_pred ccccccccccccCc-ccCCCCccceeeecCCCCcccchhh-hcCCCccEEeccCCCCCccCCc-cccccccccEEecCCC
Q 044550 411 FLRALRNWIREIPE-NVGKLIHLKYLNLSELRIERIPETL-CELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGT 487 (662)
Q Consensus 411 ~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 487 (662)
.|.+-++.+..+|. .+..+++|++|++++|.++.+|..+ .++++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp EEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS
T ss_pred EEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC
Confidence 33333444554443 4555556666666655555555433 455556666665555 444443 2355555666666555
Q ss_pred ccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEE
Q 044550 488 YLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLG 567 (662)
Q Consensus 488 ~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 567 (662)
......|..++.+++|++|++. .+... ......+..+++|+.|+
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls--~n~l~----------------------------------~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLG--YNELQ----------------------------------SLPKGVFDKLTSLKELR 163 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECC--SSCCC----------------------------------CCCTTTTTTCTTCCEEE
T ss_pred ccCeeCHHHhCcCcCCCEEECC--CCcCC----------------------------------ccCHhHccCCcccceeE
Confidence 4422222334555555555321 11110 00111233445566666
Q ss_pred EEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc-cccccCccEEEecCCC
Q 044550 568 LQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW-LTSLTNLRELKLSLCV 628 (662)
Q Consensus 568 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~-i~~l~~L~~L~L~~~~ 628 (662)
++.+.... .....+..+++|+.|++++|....+|.. +..+++|+.|+|++|+
T Consensus 164 L~~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 164 LYNNQLKR---------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSSCCSC---------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ecCCcCcE---------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 65443200 0012244567788888888877777654 5578888888888876
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=5.6e-14 Score=140.52 Aligned_cols=209 Identities=19% Similarity=0.197 Sum_probs=121.5
Q ss_pred cccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCC
Q 044550 418 WIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPI 495 (662)
Q Consensus 418 ~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~ 495 (662)
.+..+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|. +..+|. .+..+++|++|++++|......|.
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 4555666554 468888888888887765 67788888888888876 555543 677788888888888876444446
Q ss_pred cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCC
Q 044550 496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE 575 (662)
Q Consensus 496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 575 (662)
.++.+++|++|++. .+......... +..+++|+.|.+.+.. +... .....+..+++|+.|+++.+....
T Consensus 95 ~~~~l~~L~~L~l~--~n~l~~~~~~~---~~~l~~L~~L~l~~n~----l~~~--~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 95 AFSGLSSLQKLVAV--ETNLASLENFP---IGHLKTLKELNVAHNL----IQSF--KLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTTTCTTCCEEECT--TSCCCCSTTCC---CTTCTTCCEEECCSSC----CCCC--CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred hhcCCccccEEECC--CCCccccCchh---cccCCCCCEEECcCCc----ccee--cCchhhccCCCCCEEECCCCCCCc
Confidence 67778888877532 22221111212 3344445555544321 1110 012235566788888887664310
Q ss_pred CCCCchhHHHHhhhCCCCCCCc-EEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCC--CCCcc-cceeecc
Q 044550 576 GRRKNEKDKQLLEALQPPLNVE-ELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP--LGKLP-LEKLQLK 647 (662)
Q Consensus 576 ~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L~~l~l~ 647 (662)
. ....+..+...+.|. +|++++|....+|.......+|++|+|++|... .+|. ++.++ |+.+++.
T Consensus 164 ~------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 164 I------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp E------CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECC
T ss_pred C------CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEcc
Confidence 0 001122222233333 778888877777766666667888888888633 3332 35555 5555544
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=9.1e-14 Score=141.22 Aligned_cols=191 Identities=21% Similarity=0.245 Sum_probs=146.2
Q ss_pred cCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCc
Q 044550 426 VGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRT 505 (662)
Q Consensus 426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 505 (662)
+..+.+|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.. ..+| .++.+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcC-CCch-hhcCCCCCCE
Confidence 446889999999999999997 69999999999999998 888887 99999999999999975 5555 6889999999
Q ss_pred cCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHH
Q 044550 506 LEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQ 585 (662)
Q Consensus 506 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 585 (662)
|++. ++... .+..+..+++|+.|.+.+. .+.... .+..+++|+.|+++.+....
T Consensus 112 L~l~--~n~l~-----~~~~l~~l~~L~~L~l~~n----~l~~~~-----~l~~l~~L~~L~l~~n~l~~---------- 165 (308)
T 1h6u_A 112 LDLT--STQIT-----DVTPLAGLSNLQVLYLDLN----QITNIS-----PLAGLTNLQYLSIGNAQVSD---------- 165 (308)
T ss_dssp EECT--TSCCC-----CCGGGTTCTTCCEEECCSS----CCCCCG-----GGGGCTTCCEEECCSSCCCC----------
T ss_pred EECC--CCCCC-----CchhhcCCCCCCEEECCCC----ccCcCc-----cccCCCCccEEEccCCcCCC----------
Confidence 9743 33321 2334666677777776654 112211 16678999999998775310
Q ss_pred HhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeeccccc
Q 044550 586 LLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLK 650 (662)
Q Consensus 586 ~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l~ 650 (662)
+..+..+++|+.|++++|....+|. +..+++|++|+|++|... .++++..+| |+.|++.+.+
T Consensus 166 -~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 166 -LTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCC-BCGGGTTCTTCCEEEEEEEE
T ss_pred -ChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccC-ccccccCCCCCCEEEccCCe
Confidence 1226678999999999999888775 789999999999999744 455578888 8877776543
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=2e-14 Score=146.94 Aligned_cols=210 Identities=15% Similarity=0.101 Sum_probs=118.6
Q ss_pred hhcCcccccc---cccccccC-cccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccE
Q 044550 406 FSKLVFLRAL---RNWIREIP-ENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRS 481 (662)
Q Consensus 406 ~~~l~~Lrvl---~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~ 481 (662)
+..++.|+.+ +|.+..++ ..+..+++|++|+|++|.++.+++ +.++++|++|++++|. +..+| ..++|++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~ 103 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIET 103 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCE
Confidence 3333444444 46666654 567778888888888887776655 7778888888888776 55554 3377777
Q ss_pred EecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccc-ccc
Q 044550 482 LLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQL-YNK 560 (662)
Q Consensus 482 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l-~~~ 560 (662)
|++++|.. ..+|.. .+++|++|++ ..+......+..+ ..+++|+.|.+++. .+.......+ ..+
T Consensus 104 L~l~~n~l-~~~~~~--~~~~L~~L~l--~~N~l~~~~~~~~---~~l~~L~~L~Ls~N-------~l~~~~~~~~~~~l 168 (317)
T 3o53_A 104 LHAANNNI-SRVSCS--RGQGKKNIYL--ANNKITMLRDLDE---GCRSRVQYLDLKLN-------EIDTVNFAELAASS 168 (317)
T ss_dssp EECCSSCC-SEEEEC--CCSSCEEEEC--CSSCCCSGGGBCT---GGGSSEEEEECTTS-------CCCEEEGGGGGGGT
T ss_pred EECCCCcc-CCcCcc--ccCCCCEEEC--CCCCCCCccchhh---hccCCCCEEECCCC-------CCCcccHHHHhhcc
Confidence 88777765 333322 3566777653 2333222112223 33344444444432 0111111122 245
Q ss_pred ccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCC-CCCCc
Q 044550 561 KNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLP-PLGKL 639 (662)
Q Consensus 561 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp-~l~~L 639 (662)
++|+.|+++.+... .......+++|+.|++++|....+|..+..+++|++|+|++|... .+| .++.+
T Consensus 169 ~~L~~L~L~~N~l~-----------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 169 DTLEHLNLQYNFIY-----------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp TTCCEEECTTSCCC-----------EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred CcCCEEECCCCcCc-----------ccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 67777777665421 012233467788888888777777777777788888888877633 232 23444
Q ss_pred c-cceeeccc
Q 044550 640 P-LEKLQLKN 648 (662)
Q Consensus 640 p-L~~l~l~~ 648 (662)
| |+.+++.+
T Consensus 237 ~~L~~L~l~~ 246 (317)
T 3o53_A 237 QNLEHFDLRG 246 (317)
T ss_dssp TTCCEEECTT
T ss_pred CCCCEEEccC
Confidence 4 44444443
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=161.54 Aligned_cols=178 Identities=15% Similarity=0.064 Sum_probs=99.2
Q ss_pred hcCCCccEEeccCCCCCccC---CccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCcccc
Q 044550 450 CELYNLQKLDIRGCQYLRGL---PAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESL 526 (662)
Q Consensus 450 ~~L~~L~~L~l~~~~~l~~l---P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L 526 (662)
..+++|++|++++|. +... |..+..+++|++|++++|.. ..+|..++.+++|++|++. ++......+ ...+
T Consensus 344 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~l~--~n~l~~~~~--~~~~ 417 (570)
T 2z63_A 344 VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQ--HSNLKQMSE--FSVF 417 (570)
T ss_dssp CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEETCTTCCEEECT--TSEEESCTT--SCTT
T ss_pred ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCcc-ccccccccccCCCCEEEcc--CCccccccc--hhhh
Confidence 455666666666665 4333 45566666777777766654 4444446666677766532 222111101 1123
Q ss_pred ccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCC
Q 044550 527 KNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRG 606 (662)
Q Consensus 527 ~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 606 (662)
..+++|+.|.+++.. ........+..+++|+.|+++.+.. ........+..+++|+.|++++|..
T Consensus 418 ~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 418 LSLRNLIYLDISHTH-------TRVAFNGIFNGLSSLEVLKMAGNSF--------QENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp TTCTTCCEEECTTSC-------CEECCTTTTTTCTTCCEEECTTCEE--------GGGEECSCCTTCTTCCEEECTTSCC
T ss_pred hcCCCCCEEeCcCCc-------ccccchhhhhcCCcCcEEECcCCcC--------ccccchhhhhcccCCCEEECCCCcc
Confidence 344445555544431 1111223355667788887765531 1112234566778888888888877
Q ss_pred CCC-CcccccccCccEEEecCCCCCCCCC-CCCCcc-cceeeccc
Q 044550 607 NIF-PKWLTSLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLKN 648 (662)
Q Consensus 607 ~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~~ 648 (662)
..+ |.++..+++|++|+|++|......| .++.+| |+.+++.+
T Consensus 483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence 665 7778888888888888886443222 145566 55555543
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.50 E-value=1.4e-13 Score=156.26 Aligned_cols=227 Identities=19% Similarity=0.124 Sum_probs=133.9
Q ss_pred chHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCC-ccccc
Q 044550 402 LSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRK 475 (662)
Q Consensus 402 ~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~ 475 (662)
.+..|.+++.|+++ +|.+..+ |..++++++|++|+|++|.++.+|+ .++++++|++|++++|. +..+| ..+++
T Consensus 41 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 119 (680)
T 1ziw_A 41 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVK 119 (680)
T ss_dssp CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTT
T ss_pred CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccc
Confidence 34457777777777 4566665 5567788888888888888888877 58888888888888887 55555 56888
Q ss_pred cccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhc
Q 044550 476 LMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERL 555 (662)
Q Consensus 476 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~ 555 (662)
+++|++|++++|......|..++++++|++|++. .+......+..+. ...++.|+.|.+.+.. +. .....
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~----l~---~~~~~ 189 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS--NNKIQALKSEELD-IFANSSLKKLELSSNQ----IK---EFSPG 189 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC--SSCCCCBCHHHHG-GGTTCEESEEECTTCC----CC---CBCTT
T ss_pred cCCCCEEECCCCcccccCchhhcccccCCEEEcc--CCcccccCHHHhh-ccccccccEEECCCCc----cc---ccChh
Confidence 8888888888887655566677888888888633 2222111111111 1123445554444321 00 00111
Q ss_pred ccccc---------------------------ccCCcEEEEecCCCCCCCCchhHHHHhhhCCCC--CCCcEEEEeecCC
Q 044550 556 QLYNK---------------------------KNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPP--LNVEELEIESYRG 606 (662)
Q Consensus 556 ~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~--~~L~~L~l~~~~~ 606 (662)
.+..+ .+|+.|+++.+.... .....+... ++|+.|++++|..
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~---------~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST---------TSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE---------ECTTTTGGGGGSCCCEEECTTSCC
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc---------cChhHhhccCcCCCCEEECCCCCc
Confidence 12222 345555554432100 000111112 3477777777765
Q ss_pred CCC-CcccccccCccEEEecCCCCCCCCC-CCCCcc-cceeeccc
Q 044550 607 NIF-PKWLTSLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLKN 648 (662)
Q Consensus 607 ~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~~ 648 (662)
..+ |.++..+++|++|+|++|......| .++.++ |+.|.+.+
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 544 4566677777777777776544333 366677 77777764
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=3.8e-14 Score=153.50 Aligned_cols=181 Identities=15% Similarity=0.101 Sum_probs=81.6
Q ss_pred cccccccC-cccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC
Q 044550 416 RNWIREIP-ENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP 494 (662)
Q Consensus 416 ~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p 494 (662)
+|.+..+| ..++.+++|++|+|++|.++.+++ ++++++|++|++++|. +..+|. .++|++|++++|... .+|
T Consensus 43 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~N~l~-~~~ 115 (487)
T 3oja_A 43 GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNIS-RVS 115 (487)
T ss_dssp SSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSSCCC-CEE
T ss_pred CCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcCCcCC-CCC
Confidence 44454442 455556666666666666554443 5566666666666655 444432 255566666555442 222
Q ss_pred CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccc-ccccCCcEEEEecCC
Q 044550 495 IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLY-NKKNLLRLGLQFGGD 573 (662)
Q Consensus 495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~ 573 (662)
. ..+++|+.|++ .++......+..+.. ++.|+.|.+++. .+.......+. .+++|+.|+++.+..
T Consensus 116 ~--~~l~~L~~L~L--~~N~l~~~~~~~~~~---l~~L~~L~Ls~N-------~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 116 C--SRGQGKKNIYL--ANNKITMLRDLDEGC---RSRVQYLDLKLN-------EIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp E--CCCSSCEEEEC--CSSCCCSGGGBCGGG---GSSEEEEECTTS-------CCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred c--cccCCCCEEEC--CCCCCCCCCchhhcC---CCCCCEEECCCC-------CCCCcChHHHhhhCCcccEEecCCCcc
Confidence 2 12345555532 222222111222222 223333333321 00011111121 345555555554432
Q ss_pred CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550 574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~ 628 (662)
. .......+++|+.|++++|....+|.++..+++|+.|+|++|.
T Consensus 182 ~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 182 Y-----------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp C-----------EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred c-----------cccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 0 0012223455666666666555555555555666666666655
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=2.7e-13 Score=136.37 Aligned_cols=165 Identities=20% Similarity=0.114 Sum_probs=87.1
Q ss_pred ccccccc-CcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC
Q 044550 416 RNWIREI-PENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP 494 (662)
Q Consensus 416 ~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p 494 (662)
+|.+..+ |..+..+++|++|+|++|.++.+|.. +.+++|++|++++|. +..+|..+..+++|++|++++|.. ..+|
T Consensus 40 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l-~~l~ 116 (290)
T 1p9a_G 40 ENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRL-TSLP 116 (290)
T ss_dssp TSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCC-CCCC
T ss_pred CCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcC-cccC
Confidence 3444443 33445555555555555555555443 455555555555554 445555555555555555555543 2222
Q ss_pred -CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCC
Q 044550 495 -IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGD 573 (662)
Q Consensus 495 -~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 573 (662)
..++.+++|+.|++ .++... ......+..+++|+.|+++.+..
T Consensus 117 ~~~~~~l~~L~~L~L--~~N~l~----------------------------------~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 117 LGALRGLGELQELYL--KGNELK----------------------------------TLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp SSTTTTCTTCCEEEC--TTSCCC----------------------------------CCCTTTTTTCTTCCEEECTTSCC
T ss_pred HHHHcCCCCCCEEEC--CCCCCC----------------------------------ccChhhcccccCCCEEECCCCcC
Confidence 33445555555431 111110 01111233445566666654432
Q ss_pred CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550 574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~ 628 (662)
.. .....+..+++|+.|++++|....+|.++..+++|+.|+|++|.
T Consensus 161 ~~---------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 161 TE---------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp SC---------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred Cc---------cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 00 00122345678888888888888888888888888888888876
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=6.1e-14 Score=137.03 Aligned_cols=207 Identities=17% Similarity=0.163 Sum_probs=109.6
Q ss_pred ccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCC-CccccccC-
Q 044550 419 IREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDG-TYLLKYMP- 494 (662)
Q Consensus 419 ~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~-~~~~~~~p- 494 (662)
++.+|. +. .+|++|++++|.++.+|+ .+.++++|++|++++|..+..+|. .+..+++|++|++++ |.. ..+|
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYIDP 98 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEECT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcCH
Confidence 444554 32 256666666666665554 455666666666666543444443 455666666666665 332 3333
Q ss_pred CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCC-cEEEEecCC
Q 044550 495 IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLL-RLGLQFGGD 573 (662)
Q Consensus 495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~ 573 (662)
..++.+++|++|++... .... .+. +..+.+|+.|+.|.+.+.. . +.......+.++.+|+ .|+++.+..
T Consensus 99 ~~f~~l~~L~~L~l~~n--~l~~-lp~-~~~l~~L~~L~~L~l~~N~---~---l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNT--GLKM-FPD-LTKVYSTDIFFILEITDNP---Y---MTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TSEECCTTCCEEEEEEE--CCCS-CCC-CTTCCBCCSEEEEEEESCT---T---CCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred HHhCCCCCCCEEeCCCC--CCcc-ccc-cccccccccccEEECCCCc---c---hhhcCcccccchhcceeEEEcCCCCC
Confidence 34555666666643222 1111 111 2333333322244444320 1 1111222345567777 777765542
Q ss_pred CCCCCCchhHHHHhhhCCCCCCCcEEEEeecC-CCCCCc-ccccc-cCccEEEecCCCCCCCCCCCCCcc-cceeecccc
Q 044550 574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPK-WLTSL-TNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNL 649 (662)
Q Consensus 574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~lP~-~i~~l-~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l 649 (662)
. .+.......++|++|++++|. ...+|. .+..+ ++|++|+|++|.. ..+|.- .++ ++.|.+.+.
T Consensus 169 ~----------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 T----------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp C----------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCCT-TCTTCSEEECTTC
T ss_pred c----------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCChh-HhccCceeeccCc
Confidence 1 011111122689999999994 777754 56678 9999999999874 356543 677 888877765
Q ss_pred cC
Q 044550 650 KS 651 (662)
Q Consensus 650 ~~ 651 (662)
..
T Consensus 237 ~~ 238 (239)
T 2xwt_C 237 WT 238 (239)
T ss_dssp --
T ss_pred cC
Confidence 44
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.48 E-value=5.3e-14 Score=155.39 Aligned_cols=222 Identities=19% Similarity=0.161 Sum_probs=147.7
Q ss_pred hcCccccccccccccc-CcccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEe
Q 044550 407 SKLVFLRALRNWIREI-PENVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLL 483 (662)
Q Consensus 407 ~~l~~Lrvl~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~ 483 (662)
..++.|.+-+|.+..+ |..+.++++|++|++++|.++.+| ..++++++|++|++++|. +..+|.. ++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEE
Confidence 3444555546777776 567899999999999999999876 579999999999999998 6666654 99999999999
Q ss_pred cCCCcccc-ccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccccc
Q 044550 484 NDGTYLLK-YMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKN 562 (662)
Q Consensus 484 l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (662)
+++|.... ..|..++.+++|++|++..+ ...... ....+..+++|+.|.+.+.. +.......+..+++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n--~~~~~~--~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNV--ETFSEI--RRIDFAGLTSLNELEIKALS-------LRNYQSQSLKSIRD 173 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEES--SSCCEE--CTTTTTTCCEEEEEEEEETT-------CCEECTTTTTTCSE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCC--cccccc--CHhhhhcccccCeeeccCCc-------ccccChhhhhcccc
Confidence 99997643 45678999999999975433 211111 11234555566666665431 11222334667788
Q ss_pred CCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC---Ccccc-cccCccEEEecCCCCCCCCC----
Q 044550 563 LLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF---PKWLT-SLTNLRELKLSLCVNCEHLP---- 634 (662)
Q Consensus 563 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l---P~~i~-~l~~L~~L~L~~~~~~~~lp---- 634 (662)
|+.|+++.+.. ...... ....+++|++|++++|....+ |.++. .+++|++|++++|......+
T Consensus 174 L~~L~l~~n~~-------~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 174 IHHLTLHLSES-------AFLLEI--FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp EEEEEEECSBS-------TTHHHH--HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred CceEecccCcc-------cccchh--hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 89998887653 111111 123468899999999887665 33333 57889999999886322110
Q ss_pred -CCCCcc-cceeecccc
Q 044550 635 -PLGKLP-LEKLQLKNL 649 (662)
Q Consensus 635 -~l~~Lp-L~~l~l~~l 649 (662)
.+..++ ++.+.+.++
T Consensus 245 ~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 245 KLLRYILELSEVEFDDC 261 (549)
T ss_dssp GGGGGCTTCCEEEEESC
T ss_pred HHhhhhccccccccccc
Confidence 123445 566655544
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.47 E-value=3.4e-15 Score=152.62 Aligned_cols=234 Identities=13% Similarity=0.074 Sum_probs=159.0
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhh
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETL 449 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i 449 (662)
..+++.|.+..+.+..++ +..+..++.|+.+ +|.+...++ +..+++|++|++++|.++.+|.
T Consensus 33 ~~~L~~L~L~~n~l~~~~------------~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~-- 97 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQIS------------AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-- 97 (317)
T ss_dssp GGGCSEEECTTSCCCCCC------------HHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE--
T ss_pred CCCCCEEECcCCccCcCC------------HHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC--
Confidence 346777777777665442 2336666677776 567776665 8899999999999999888764
Q ss_pred hcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCcccc-cc
Q 044550 450 CELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESL-KN 528 (662)
Q Consensus 450 ~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L-~~ 528 (662)
.++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|+.|++. .+..... ....+ ..
T Consensus 98 --~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~~---~~~~~~~~ 167 (317)
T 3o53_A 98 --GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK--LNEIDTV---NFAELAAS 167 (317)
T ss_dssp --CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT--TSCCCEE---EGGGGGGG
T ss_pred --CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC--CCCCCcc---cHHHHhhc
Confidence 4899999999988 6666543 47889999999997755555678889999998643 3332111 11222 24
Q ss_pred CcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCC
Q 044550 529 LQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNI 608 (662)
Q Consensus 529 L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 608 (662)
++.|+.|.+++.. +... .....+++|+.|+++.+... .....+..+++|+.|++++|....
T Consensus 168 l~~L~~L~L~~N~----l~~~-----~~~~~l~~L~~L~Ls~N~l~----------~l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 168 SDTLEHLNLQYNF----IYDV-----KGQVVFAKLKTLDLSSNKLA----------FMGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp TTTCCEEECTTSC----CCEE-----ECCCCCTTCCEEECCSSCCC----------EECGGGGGGTTCSEEECTTSCCCE
T ss_pred cCcCCEEECCCCc----Cccc-----ccccccccCCEEECCCCcCC----------cchhhhcccCcccEEECcCCcccc
Confidence 5566666665531 1111 12234678999999877531 112235567899999999999888
Q ss_pred CCcccccccCccEEEecCCCCC-CCCC-CCCCcc-cceeeccccc
Q 044550 609 FPKWLTSLTNLRELKLSLCVNC-EHLP-PLGKLP-LEKLQLKNLK 650 (662)
Q Consensus 609 lP~~i~~l~~L~~L~L~~~~~~-~~lp-~l~~Lp-L~~l~l~~l~ 650 (662)
+|.++..+++|++|+|++|... ..+| .++.+| ++.+.+.++.
T Consensus 229 l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 9999989999999999999854 3222 245666 6666665433
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.47 E-value=2.9e-13 Score=145.08 Aligned_cols=67 Identities=18% Similarity=0.362 Sum_probs=34.6
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCc
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTY 488 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 488 (662)
+|.+..+| .++.+++|++|++++|.++.+|..+ .+|++|++++|. +..+| .++.+++|++|++++|.
T Consensus 140 ~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 140 NNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCc
Confidence 34555555 3555555666666555555555432 255555555554 44444 35555555555555443
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.46 E-value=2.4e-13 Score=135.40 Aligned_cols=184 Identities=23% Similarity=0.297 Sum_probs=127.5
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCccc-cccccccEEecCCCcccccc
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYM 493 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~~~~~ 493 (662)
++.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|. +..+|..+ ..+++|++|++++|.. ..+
T Consensus 25 ~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l-~~~ 100 (270)
T 2o6q_A 25 SKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKL-QAL 100 (270)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCC-CCC
T ss_pred CCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcC-CcC
Confidence 457777887665 678899999998888875 68889999999998887 67777654 7788999999988875 444
Q ss_pred C-CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecC
Q 044550 494 P-IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGG 572 (662)
Q Consensus 494 p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 572 (662)
| ..++.+++|+.|++. ++.... .....+..+++|+.|+++.+.
T Consensus 101 ~~~~~~~l~~L~~L~l~--~n~l~~----------------------------------~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLD--RNQLKS----------------------------------LPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp CTTTTTTCSSCCEEECC--SSCCCC----------------------------------CCTTTTTTCTTCCEEECCSSC
T ss_pred CHhHcccccCCCEEECC--CCccCe----------------------------------eCHHHhCcCcCCCEEECCCCc
Confidence 4 345777777777532 121100 001123455677778777664
Q ss_pred CCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc-cccccCccEEEecCCCCCCCCCC--CCCcc-cceeeccc
Q 044550 573 DIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW-LTSLTNLRELKLSLCVNCEHLPP--LGKLP-LEKLQLKN 648 (662)
Q Consensus 573 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~-i~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L~~l~l~~ 648 (662)
... .....+..+++|+.|++++|....+|.. +..+++|++|+|++|... .+|. ++.+| |+.|.+.+
T Consensus 145 l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 145 LQS---------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCC---------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred CCc---------cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecC
Confidence 310 0112356679999999999998888764 678999999999999744 4443 56677 77766654
Q ss_pred c
Q 044550 649 L 649 (662)
Q Consensus 649 l 649 (662)
.
T Consensus 215 N 215 (270)
T 2o6q_A 215 N 215 (270)
T ss_dssp S
T ss_pred C
Confidence 3
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=4.6e-13 Score=134.70 Aligned_cols=190 Identities=20% Similarity=0.129 Sum_probs=127.7
Q ss_pred hcCcccccc---cccccccCcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCccccccccccEE
Q 044550 407 SKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL 482 (662)
Q Consensus 407 ~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L 482 (662)
.+++.++.+ ++.++.+|..+. .+|++|+|++|.++.+ |..+.++.+|++|++++|. +..+|.. +.+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEE
Confidence 344444444 457777887765 6888889988888876 4578888889999998887 7777664 788888899
Q ss_pred ecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccccc
Q 044550 483 LNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKN 562 (662)
Q Consensus 483 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (662)
++++|.. ..+|..+..+++|+.|++. .+...... ...+..+.+
T Consensus 83 ~Ls~N~l-~~l~~~~~~l~~L~~L~l~--~N~l~~l~----------------------------------~~~~~~l~~ 125 (290)
T 1p9a_G 83 DLSHNQL-QSLPLLGQTLPALTVLDVS--FNRLTSLP----------------------------------LGALRGLGE 125 (290)
T ss_dssp ECCSSCC-SSCCCCTTTCTTCCEEECC--SSCCCCCC----------------------------------SSTTTTCTT
T ss_pred ECCCCcC-CcCchhhccCCCCCEEECC--CCcCcccC----------------------------------HHHHcCCCC
Confidence 8888865 6778777788888877532 22210000 112334556
Q ss_pred CCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCccc-ccccCccEEEecCCCCCCCCC-CCCCcc
Q 044550 563 LLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL-TSLTNLRELKLSLCVNCEHLP-PLGKLP 640 (662)
Q Consensus 563 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i-~~l~~L~~L~L~~~~~~~~lp-~l~~Lp 640 (662)
|+.|+++.+.... .....+..+++|+.|++++|....+|..+ ..+++|++|+|++|... .+| .+...+
T Consensus 126 L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~ 195 (290)
T 1p9a_G 126 LQELYLKGNELKT---------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195 (290)
T ss_dssp CCEEECTTSCCCC---------CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred CCEEECCCCCCCc---------cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc
Confidence 6777766553210 01123456789999999999999888765 57999999999999844 333 234444
Q ss_pred -cceeecc
Q 044550 641 -LEKLQLK 647 (662)
Q Consensus 641 -L~~l~l~ 647 (662)
|+.+.+.
T Consensus 196 ~L~~l~L~ 203 (290)
T 1p9a_G 196 LLPFAFLH 203 (290)
T ss_dssp CCSEEECC
T ss_pred cCCeEEeC
Confidence 5544444
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.45 E-value=4.9e-14 Score=152.61 Aligned_cols=231 Identities=13% Similarity=0.068 Sum_probs=162.8
Q ss_pred CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhh
Q 044550 374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLC 450 (662)
Q Consensus 374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~ 450 (662)
.+++.|.+..+.+..++ +..|..++.|+.| +|.+...++ ++.+++|++|+|++|.++.+|..
T Consensus 34 ~~L~~L~Ls~n~l~~~~------------~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~-- 98 (487)
T 3oja_A 34 WNVKELDLSGNPLSQIS------------AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG-- 98 (487)
T ss_dssp GGCCEEECCSSCCCCCC------------GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC--
T ss_pred CCccEEEeeCCcCCCCC------------HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC--
Confidence 46788888877776543 2235666677776 577776655 89999999999999999988753
Q ss_pred cCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCc
Q 044550 451 ELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ 530 (662)
Q Consensus 451 ~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~ 530 (662)
++|++|++++|. +..+|.. .+++|++|++++|......|..++.+++|+.|++ .++......+..+. ..++
T Consensus 99 --~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L--s~N~l~~~~~~~l~--~~l~ 169 (487)
T 3oja_A 99 --PSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL--KLNEIDTVNFAELA--ASSD 169 (487)
T ss_dssp --TTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC--TTSCCCEEEGGGGG--GGTT
T ss_pred --CCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC--CCCCCCCcChHHHh--hhCC
Confidence 899999999998 6666653 5789999999999876666778899999999974 33433221222221 2455
Q ss_pred ccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCC
Q 044550 531 LLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFP 610 (662)
Q Consensus 531 ~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP 610 (662)
.|+.|.+++.. +... ..+..+++|+.|+++.+... .....+..+++|+.|++++|....+|
T Consensus 170 ~L~~L~Ls~N~----l~~~-----~~~~~l~~L~~L~Ls~N~l~----------~~~~~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 170 TLEHLNLQYNF----IYDV-----KGQVVFAKLKTLDLSSNKLA----------FMGPEFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp TCCEEECTTSC----CCEE-----ECCCCCTTCCEEECCSSCCC----------EECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred cccEEecCCCc----cccc-----cccccCCCCCEEECCCCCCC----------CCCHhHcCCCCccEEEecCCcCcccc
Confidence 66666665531 1111 22335789999999887531 11223556789999999999999999
Q ss_pred cccccccCccEEEecCCCCC-CCCC-CCCCcc-cceeecc
Q 044550 611 KWLTSLTNLRELKLSLCVNC-EHLP-PLGKLP-LEKLQLK 647 (662)
Q Consensus 611 ~~i~~l~~L~~L~L~~~~~~-~~lp-~l~~Lp-L~~l~l~ 647 (662)
.++..+++|+.|++++|... ..+| .++.+| +..+.+.
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999999999999999854 3332 255666 6666553
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=5.9e-14 Score=142.90 Aligned_cols=89 Identities=20% Similarity=0.116 Sum_probs=56.3
Q ss_pred ccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCC
Q 044550 557 LYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPL 636 (662)
Q Consensus 557 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l 636 (662)
+..+++|+.|+++.+...... ...+..+..+++|++|++++|.+..+|.++. ++|++|+|++|... .+|.+
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~------p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~-~~~~~ 290 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATV------NPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLN-RAPQP 290 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCC------CSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCC-SCCCT
T ss_pred HhcCCCCCEEECCCCCCCccc------hhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCC-CCchh
Confidence 345567777777766431100 0001222334799999999999888998875 89999999999743 44545
Q ss_pred CCcccceeecccccCccEeCCcccC
Q 044550 637 GKLPLEKLQLKNLKSVKRVGNEFLG 661 (662)
Q Consensus 637 ~~LpL~~l~l~~l~~L~~~~n~~~g 661 (662)
..+| +++.|++.+|.|+.
T Consensus 291 ~~l~-------~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DELP-------EVDNLTLDGNPFLV 308 (310)
T ss_dssp TSCC-------CCSCEECSSTTTSC
T ss_pred hhCC-------CccEEECcCCCCCC
Confidence 5555 44455566666653
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.45 E-value=1.5e-13 Score=154.54 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=72.0
Q ss_pred cCCCceeEEEEecCCCCCccc-cccccccc----------c-cchHhhhcCcccccc---cccccccCc-ccCCCCccce
Q 044550 371 SFGDNVRHLGLNFQRGASFPM-SIHRFNRF----------S-ILSELFSKLVFLRAL---RNWIREIPE-NVGKLIHLKY 434 (662)
Q Consensus 371 ~~~~~~r~l~l~~~~~~~~~~-~~~~l~~l----------~-~~~~~~~~l~~Lrvl---~~~~~~lp~-~i~~l~~Lr~ 434 (662)
..+..+++|.+..+.+..+|. .+.++..| + ..+..|.+++.|++| +|.+..+|. .|.+|.+|++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 346788999999988886653 33333322 1 223345566666665 356666654 3566666666
Q ss_pred eeecCCCCcccch-hhhcCCCccEEeccCCCCCc--cCCccccccccccEEecCCCcc
Q 044550 435 LNLSELRIERIPE-TLCELYNLQKLDIRGCQYLR--GLPAGIRKLMNMRSLLNDGTYL 489 (662)
Q Consensus 435 L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~ 489 (662)
|+|++|.++.+|+ .+++|++|++|++++|. +. .+|..++.+++|++|++++|..
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccc
Confidence 6666666666654 36666666677666665 33 2455666666677777666654
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.45 E-value=3.7e-14 Score=144.48 Aligned_cols=199 Identities=17% Similarity=0.122 Sum_probs=140.7
Q ss_pred cCcccccc---ccccc-ccCccc--CCCCccceeeecCCCCcccchhhhcC-----CCccEEeccCCCCCccCC-ccccc
Q 044550 408 KLVFLRAL---RNWIR-EIPENV--GKLIHLKYLNLSELRIERIPETLCEL-----YNLQKLDIRGCQYLRGLP-AGIRK 475 (662)
Q Consensus 408 ~l~~Lrvl---~~~~~-~lp~~i--~~l~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~l~~lP-~~i~~ 475 (662)
.++.|+.+ +|.+. .+|..+ ..+++|++|+|++|.++.+|..++++ ++|++|++++|. +..+| ..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc
Confidence 45566665 56776 578876 88999999999999999889888888 999999999998 55555 78999
Q ss_pred cccccEEecCCCccccc--cCCcC--CCCCCCCccCceeecCccCCCCccCccc-cccCcccCccccccCCCCCCCCChh
Q 044550 476 LMNMRSLLNDGTYLLKY--MPIGI--SRLTSLRTLEKFVVGGGVDGGGTCRLES-LKNLQLLRKCSIEGLKGLSNVSHVD 550 (662)
Q Consensus 476 L~~L~~L~l~~~~~~~~--~p~~i--~~L~~L~~L~~~~~~~~~~~~~~~~l~~-L~~L~~L~~L~i~~~~~~~~~~~~~ 550 (662)
+++|++|++++|..... +|..+ +.+++|++|++ .++... ..+..... ...+++|+.|++++-. +....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L--~~N~l~-~~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~ 244 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL--RNAGME-TPSGVCSALAAARVQLQGLDLSHNS----LRDAA 244 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEEC--TTSCCC-CHHHHHHHHHHTTCCCSEEECTTSC----CCSSC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEEC--CCCcCc-chHHHHHHHHhcCCCCCEEECCCCc----CCccc
Confidence 99999999999975443 34444 88999999964 333321 10111111 1344566666665431 11100
Q ss_pred hhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550 551 EVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 551 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~ 629 (662)
....+..+++|+.|+++.+... .+...+. ++|++|++++|....+|. +..+++|++|+|++|..
T Consensus 245 --~~~~~~~l~~L~~L~Ls~N~l~----------~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 245 --GAPSCDWPSQLNSLNLSFTGLK----------QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp --CCSCCCCCTTCCEEECTTSCCS----------SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred --chhhhhhcCCCCEEECCCCccC----------hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 0123445689999999877531 1122222 799999999999998887 88999999999999974
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=1.6e-12 Score=143.87 Aligned_cols=205 Identities=18% Similarity=0.136 Sum_probs=125.5
Q ss_pred CCCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhc
Q 044550 372 FGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCE 451 (662)
Q Consensus 372 ~~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~ 451 (662)
...+++.|.+..+.+..+|.. +.+++.|.+.+|.+..+|. .+.+|++|++++|.++.+|..
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~~-------------l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~--- 139 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPVL-------------PPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL--- 139 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCCC-------------CTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---
T ss_pred cCCCCCEEEcCCCcCCcCCCC-------------CCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---
Confidence 467899999999888776542 3444555555677777766 467788888888888877764
Q ss_pred CCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccC--
Q 044550 452 LYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNL-- 529 (662)
Q Consensus 452 L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L-- 529 (662)
+++|++|++++|. +..+|.. +.+|+.|++++|.. ..+| ..+++|+.|++. .+... ..+..+.+|..|
T Consensus 140 l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l-~~l~---~~~~~L~~L~Ls--~N~l~-~l~~~~~~L~~L~L 208 (622)
T 3g06_A 140 PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQL-TSLP---MLPSGLQELSVS--DNQLA-SLPTLPSELYKLWA 208 (622)
T ss_dssp CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCC---CCCTTCCEEECC--SSCCS-CCCCCCTTCCEEEC
T ss_pred CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCCCC-CCCc---ccCCCCcEEECC--CCCCC-CCCCccchhhEEEC
Confidence 4777888888776 6666653 34455555555543 3444 223444444321 11111 111111111111
Q ss_pred ------------cccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCc
Q 044550 530 ------------QLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVE 597 (662)
Q Consensus 530 ------------~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~ 597 (662)
.+|+.|.+++. .+..++ ..+++|+.|+++.+.... +.. .+++|+
T Consensus 209 ~~N~l~~l~~~~~~L~~L~Ls~N----~L~~lp-------~~l~~L~~L~Ls~N~L~~-----------lp~--~~~~L~ 264 (622)
T 3g06_A 209 YNNRLTSLPALPSGLKELIVSGN----RLTSLP-------VLPSELKELMVSGNRLTS-----------LPM--LPSGLL 264 (622)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSS----CCSCCC-------CCCTTCCEEECCSSCCSC-----------CCC--CCTTCC
T ss_pred cCCcccccCCCCCCCCEEEccCC----ccCcCC-------CCCCcCcEEECCCCCCCc-----------CCc--ccccCc
Confidence 23333333321 011111 344789999998775310 111 468999
Q ss_pred EEEEeecCCCCCCcccccccCccEEEecCCCCC
Q 044550 598 ELEIESYRGNIFPKWLTSLTNLRELKLSLCVNC 630 (662)
Q Consensus 598 ~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~ 630 (662)
.|++++|.+..+|.++..+++|+.|+|++|...
T Consensus 265 ~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 265 SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp EEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred EEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 999999999999999999999999999999854
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=2.3e-14 Score=147.70 Aligned_cols=201 Identities=14% Similarity=0.134 Sum_probs=114.0
Q ss_pred ccccccccccccCcccCCCCccceeeecCCCCcc--cchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCc
Q 044550 411 FLRALRNWIREIPENVGKLIHLKYLNLSELRIER--IPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTY 488 (662)
Q Consensus 411 ~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~ 488 (662)
.|+.-++.+...+..+..+++|++|++++|.+.. +|..+.++++|++|++++|......|..+..+++|++|++++|.
T Consensus 74 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 74 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp EEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred EEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 3333345565555556677778888887777653 66777777778888887776333566667777778888877773
Q ss_pred ccc--ccCCcCCCCCCCCccCceeecCccCCCCccCccccccCc-ccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550 489 LLK--YMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ-LLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR 565 (662)
Q Consensus 489 ~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~-~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 565 (662)
.+. .+|..++.+++|++|++..+. .... ......+..++ +|+.|.+.+... .+.. ......+..+++|+.
T Consensus 154 ~l~~~~l~~~~~~~~~L~~L~l~~~~-~l~~--~~~~~~~~~l~~~L~~L~l~~~~~--~~~~--~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 154 GFSEFALQTLLSSCSRLDELNLSWCF-DFTE--KHVQVAVAHVSETITQLNLSGYRK--NLQK--SDLSTLVRRCPNLVH 226 (336)
T ss_dssp SCCHHHHHHHHHHCTTCCEEECCCCT-TCCH--HHHHHHHHHSCTTCCEEECCSCGG--GSCH--HHHHHHHHHCTTCSE
T ss_pred CCCHHHHHHHHhcCCCCCEEcCCCCC-CcCh--HHHHHHHHhcccCCCEEEeCCCcc--cCCH--HHHHHHHhhCCCCCE
Confidence 333 255556667777777643220 1100 00112234444 555555554410 1110 112223445677777
Q ss_pred EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc---ccccccCccEEEecCC
Q 044550 566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK---WLTSLTNLRELKLSLC 627 (662)
Q Consensus 566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~---~i~~l~~L~~L~L~~~ 627 (662)
|+++.+..+. ...+..+..+++|++|++++|... .|. .+..+++|++|+|++|
T Consensus 227 L~l~~~~~l~--------~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 227 LDLSDSVMLK--------NDCFQEFFQLNYLQHLSLSRCYDI-IPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCC--------GGGGGGGGGCTTCCEEECTTCTTC-CGGGGGGGGGCTTCCEEECTTS
T ss_pred EeCCCCCcCC--------HHHHHHHhCCCCCCEeeCCCCCCC-CHHHHHHHhcCCCCCEEeccCc
Confidence 7776654211 122334455677888888777522 233 3556777888888777
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=1.7e-14 Score=151.85 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=18.5
Q ss_pred CCCCccceeeecCCCCcc-----cchhhhcCCCccEEeccCCC
Q 044550 427 GKLIHLKYLNLSELRIER-----IPETLCELYNLQKLDIRGCQ 464 (662)
Q Consensus 427 ~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~ 464 (662)
..+++|++|+|++|.+.. +|..+.++++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 344455555555554443 44444455555555555444
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.39 E-value=4.5e-12 Score=135.86 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=85.5
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcC
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL 452 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 452 (662)
+..++.+.+..+.+..+|.. +.+++.|.+-+|.+..+|.. ..+|++|++++|.++.+| +++++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~-------------~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l 152 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL-------------PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNS 152 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC-------------CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTC
T ss_pred cCCCCEEEccCCcCCccccc-------------cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCC
Confidence 45677777766666555321 34444454446677666542 268999999999999999 69999
Q ss_pred CCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCc
Q 044550 453 YNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEK 508 (662)
Q Consensus 453 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 508 (662)
++|++|++++|. +..+|..+ .+|++|++++|.. ..+| .++.+++|+.|++
T Consensus 153 ~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 153 SFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQL-EELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEECCCCc-CcccCCCc---ccccEEECcCCcC-CcCc-cccCCCCCCEEEC
Confidence 999999999998 77788754 5899999999975 5677 6899999999864
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.39 E-value=1.2e-12 Score=130.49 Aligned_cols=167 Identities=22% Similarity=0.194 Sum_probs=96.0
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccC
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMP 494 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p 494 (662)
++.+..++ .+..+++|++|++++|.++.+| .++++++|++|++++|. +..+|. .+..+++|++|++++|......|
T Consensus 50 ~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 50 NSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPD 126 (272)
T ss_dssp TSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCH
Confidence 44555543 4666777777777777777654 57777777777777776 555544 35677777777777776533333
Q ss_pred CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCC
Q 044550 495 IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDI 574 (662)
Q Consensus 495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 574 (662)
..++.+++|++|++. .+......+ ..+..+++|+.|+++.+...
T Consensus 127 ~~~~~l~~L~~L~L~--~n~l~~~~~----------------------------------~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLA--HNQLQSLPK----------------------------------GVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp TTTTTCTTCCEEECC--SSCCCCCCT----------------------------------TTTTTCTTCCEEECCSSCCC
T ss_pred HHhccCCCCCEEECC--CCccCccCH----------------------------------HHhccCccCCEEECCCCCcC
Confidence 335667777766522 222111111 11233445555555544320
Q ss_pred CCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc-cccccCccEEEecCCCCC
Q 044550 575 EGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW-LTSLTNLRELKLSLCVNC 630 (662)
Q Consensus 575 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~-i~~l~~L~~L~L~~~~~~ 630 (662)
. .....+..+++|+.|++++|....+|.. +..+++|++|+|++|...
T Consensus 171 ~---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 171 S---------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp C---------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c---------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 0 0012234556777777777776665543 457777888888777643
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=5.2e-13 Score=133.08 Aligned_cols=119 Identities=27% Similarity=0.352 Sum_probs=92.4
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchh-
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPET- 448 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~- 448 (662)
...++.+.+..+.+..++ . +..++.|+.+ +|.+..++ .+..+++|++|++++|.++.+|+.
T Consensus 40 l~~L~~L~l~~~~i~~~~-~-------------l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~ 104 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-G-------------IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGV 104 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-T-------------GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccceeeeeeCCCCccccc-c-------------cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhH
Confidence 456777777776655442 1 4455556665 57777764 789999999999999999988765
Q ss_pred hhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCccccccCC-cCCCCCCCCccCc
Q 044550 449 LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMPI-GISRLTSLRTLEK 508 (662)
Q Consensus 449 i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~ 508 (662)
++++++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|. .++.+++|+.|++
T Consensus 105 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred hcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEEC
Confidence 6999999999999998 6666654 78999999999999976 45554 4688999999964
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.37 E-value=4.4e-12 Score=124.73 Aligned_cols=166 Identities=17% Similarity=0.120 Sum_probs=107.8
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCcccccc
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYM 493 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~ 493 (662)
++.+..+|..+. .+|++|+|++|.+..+++ .++++++|++|++++|. +..+| ..+..+++|++|++++|......
T Consensus 23 ~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 99 (251)
T 3m19_A 23 GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLP 99 (251)
T ss_dssp TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccC
Confidence 456777777665 578888888888887754 68888888888888887 54444 45788888888888888764333
Q ss_pred CCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCC
Q 044550 494 PIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGD 573 (662)
Q Consensus 494 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 573 (662)
|..++.+++|++|++. .+......+. .+..+.+|+.|+++.+..
T Consensus 100 ~~~~~~l~~L~~L~L~--~N~l~~~~~~----------------------------------~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLG--GNQLKSLPSG----------------------------------VFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp TTTTTTCTTCCEEECC--SSCCCCCCTT----------------------------------TTTTCTTCCEEECCSSCC
T ss_pred hhHhcccCCCCEEEcC--CCcCCCcChh----------------------------------HhccCCcccEEECcCCcC
Confidence 3456777777777532 2221100000 122334455555544422
Q ss_pred CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCC
Q 044550 574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~ 629 (662)
.. .....+..+++|+.|++++|....+|. .+..+++|++|+|++|..
T Consensus 144 ~~---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 144 QS---------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CC---------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred Cc---------cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 00 001234556789999999988877765 567889999999999874
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=5.9e-14 Score=144.66 Aligned_cols=223 Identities=16% Similarity=0.162 Sum_probs=157.8
Q ss_pred cccCCC--CccceeeecCCCCcccchhhhcCCCccEEeccCCCCCcc-CCccccccccccEEecCCCccccccCCcCCCC
Q 044550 424 ENVGKL--IHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRG-LPAGIRKLMNMRSLLNDGTYLLKYMPIGISRL 500 (662)
Q Consensus 424 ~~i~~l--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L 500 (662)
..+..+ .++++|++++|.+...+..+.++.+|++|++++|..... +|..+..+++|++|++++|......|..++.+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 334455 789999999999998888889999999999999983323 78888999999999999997655777888999
Q ss_pred CCCCccCceeecCccCCCCccCcc-ccccCcccCccccccCCCCCCCCChhhhhhccccccc-cCCcEEEEecCCCCCCC
Q 044550 501 TSLRTLEKFVVGGGVDGGGTCRLE-SLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKK-NLLRLGLQFGGDIEGRR 578 (662)
Q Consensus 501 ~~L~~L~~~~~~~~~~~~~~~~l~-~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~ 578 (662)
++|++|++..+. ... ...+. .+..+++|+.|.+.++ ..+.. ......+..++ +|+.|+++.+..
T Consensus 142 ~~L~~L~L~~~~-~l~---~~~l~~~~~~~~~L~~L~l~~~---~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~----- 207 (336)
T 2ast_B 142 SNLVRLNLSGCS-GFS---EFALQTLLSSCSRLDELNLSWC---FDFTE--KHVQVAVAHVSETITQLNLSGYRK----- 207 (336)
T ss_dssp TTCSEEECTTCB-SCC---HHHHHHHHHHCTTCCEEECCCC---TTCCH--HHHHHHHHHSCTTCCEEECCSCGG-----
T ss_pred CCCCEEECCCCC-CCC---HHHHHHHHhcCCCCCEEcCCCC---CCcCh--HHHHHHHHhcccCCCEEEeCCCcc-----
Confidence 999999743321 110 11122 2455667777777765 22221 11233456778 999999987631
Q ss_pred CchhHHHHhhhCCCCCCCcEEEEeecCC-C-CCCcccccccCccEEEecCCCCCC--CCCCCCCcc-cceeecc------
Q 044550 579 KNEKDKQLLEALQPPLNVEELEIESYRG-N-IFPKWLTSLTNLRELKLSLCVNCE--HLPPLGKLP-LEKLQLK------ 647 (662)
Q Consensus 579 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~-~-~lP~~i~~l~~L~~L~L~~~~~~~--~lp~l~~Lp-L~~l~l~------ 647 (662)
......+...+..+++|+.|++++|.. . ..|..+..+++|++|+|++|.... .+..++.+| |+.|++.
T Consensus 208 -~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~ 286 (336)
T 2ast_B 208 -NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 286 (336)
T ss_dssp -GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTT
T ss_pred -cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHH
Confidence 011233344455678999999999983 2 456688899999999999996332 233477888 9988874
Q ss_pred -------cccCccEeCCcccC
Q 044550 648 -------NLKSVKRVGNEFLG 661 (662)
Q Consensus 648 -------~l~~L~~~~n~~~g 661 (662)
.|+.|++.+|.|+|
T Consensus 287 ~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 287 TLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp CHHHHHHHSTTSEESCCCSCC
T ss_pred HHHHHHhhCcceEEecccCcc
Confidence 36677777777765
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=2.8e-12 Score=141.77 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=104.8
Q ss_pred CCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCcc
Q 044550 427 GKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506 (662)
Q Consensus 427 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 506 (662)
..|.+|++|++++|.+..+| .++.|++|+.|+|++|. +..+|. +..+++|++|++++|.. ..+| .++.+++|+.|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEE
Confidence 44566666666666666665 46666666666666665 555554 66666666666666643 3333 46666666666
Q ss_pred CceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHH
Q 044550 507 EKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQL 586 (662)
Q Consensus 507 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 586 (662)
++. .+.. ..+..+..|++|+.|.+++. .+... ..+..+++|+.|+|+.+....
T Consensus 115 ~Ls--~N~l-----~~l~~l~~l~~L~~L~Ls~N----~l~~l-----~~l~~l~~L~~L~Ls~N~l~~----------- 167 (605)
T 1m9s_A 115 SLE--HNGI-----SDINGLVHLPQLESLYLGNN----KITDI-----TVLSRLTKLDTLSLEDNQISD----------- 167 (605)
T ss_dssp ECT--TSCC-----CCCGGGGGCTTCSEEECCSS----CCCCC-----GGGGSCTTCSEEECCSSCCCC-----------
T ss_pred Eec--CCCC-----CCCccccCCCccCEEECCCC----ccCCc-----hhhcccCCCCEEECcCCcCCC-----------
Confidence 422 2221 11233445555555555543 11111 235667788888887664310
Q ss_pred hhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCC
Q 044550 587 LEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNC 630 (662)
Q Consensus 587 l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~ 630 (662)
+..+..+++|+.|+|++|.+..+| .+..+++|+.|+|++|...
T Consensus 168 ~~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 168 IVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred chhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 111566788999999999887765 5788999999999998743
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=2.6e-12 Score=129.23 Aligned_cols=167 Identities=19% Similarity=0.210 Sum_probs=79.3
Q ss_pred CCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCc
Q 044550 429 LIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEK 508 (662)
Q Consensus 429 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 508 (662)
+.+|++|++++|.++.+|. +..+++|++|++++|. +..+|. +..+++|++|++++|.. ..+| .++.+++|+.|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEEEC
Confidence 4444444444444444432 4444444444444444 333433 44444444444444432 2222 2444444444432
Q ss_pred eeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhh
Q 044550 509 FVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLE 588 (662)
Q Consensus 509 ~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 588 (662)
. .+.. ..+..+..+++|+.|.+++. .+... ..+..+++|+.|+++.+.... ..
T Consensus 120 ~--~n~i-----~~~~~l~~l~~L~~L~l~~n----~l~~~-----~~l~~l~~L~~L~L~~N~l~~-----------~~ 172 (291)
T 1h6t_A 120 E--HNGI-----SDINGLVHLPQLESLYLGNN----KITDI-----TVLSRLTKLDTLSLEDNQISD-----------IV 172 (291)
T ss_dssp T--TSCC-----CCCGGGGGCTTCCEEECCSS----CCCCC-----GGGGGCTTCSEEECCSSCCCC-----------CG
T ss_pred C--CCcC-----CCChhhcCCCCCCEEEccCC----cCCcc-----hhhccCCCCCEEEccCCcccc-----------ch
Confidence 1 1111 01122333333444333332 01111 124455666666666553200 01
Q ss_pred hCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550 589 ALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 589 ~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~ 628 (662)
.+..+++|+.|++++|....+| .+..+++|+.|++++|.
T Consensus 173 ~l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEE
T ss_pred hhcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCc
Confidence 1455677778888777777665 36677788888888776
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.34 E-value=1.3e-12 Score=127.51 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=118.0
Q ss_pred cCcccccccccccccCc-ccCCCCccceeeecCCC-Ccccch-hhhcCCCccEEeccC-CCCCccCCc-cccccccccEE
Q 044550 408 KLVFLRALRNWIREIPE-NVGKLIHLKYLNLSELR-IERIPE-TLCELYNLQKLDIRG-CQYLRGLPA-GIRKLMNMRSL 482 (662)
Q Consensus 408 ~l~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~l~~-~~~l~~lP~-~i~~L~~L~~L 482 (662)
+++.|.+-++.++.+|. .+..+++|++|++++|. ++.+|+ .+.++++|++|++++ |. +..+|. .+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEE
Confidence 34444444566666655 56777888888888886 777765 577788888888877 44 666653 56777888888
Q ss_pred ecCCCccccccCCcCCCCCCCC---ccCceeecC-ccCCCCccCccccccCcccC-ccccccCCCCCCCCChhhhhhccc
Q 044550 483 LNDGTYLLKYMPIGISRLTSLR---TLEKFVVGG-GVDGGGTCRLESLKNLQLLR-KCSIEGLKGLSNVSHVDEVERLQL 557 (662)
Q Consensus 483 ~l~~~~~~~~~p~~i~~L~~L~---~L~~~~~~~-~~~~~~~~~l~~L~~L~~L~-~L~i~~~~~~~~~~~~~~~~~~~l 557 (662)
++++|.. ..+|. ++.+++|+ .|++ .++ ......+..+ ..+++|+ .+.+.+- .+.. .....+
T Consensus 111 ~l~~n~l-~~lp~-~~~l~~L~~L~~L~l--~~N~~l~~i~~~~~---~~l~~L~~~L~l~~n----~l~~---i~~~~~ 176 (239)
T 2xwt_C 111 GIFNTGL-KMFPD-LTKVYSTDIFFILEI--TDNPYMTSIPVNAF---QGLCNETLTLKLYNN----GFTS---VQGYAF 176 (239)
T ss_dssp EEEEECC-CSCCC-CTTCCBCCSEEEEEE--ESCTTCCEECTTTT---TTTBSSEEEEECCSC----CCCE---ECTTTT
T ss_pred eCCCCCC-ccccc-cccccccccccEEEC--CCCcchhhcCcccc---cchhcceeEEEcCCC----CCcc---cCHhhc
Confidence 8877764 45665 77777776 5542 222 2211111223 3334444 4443321 0111 111112
Q ss_pred cccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCC-CCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550 558 YNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPP-LNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 558 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~ 628 (662)
.. .+|+.|+++.+..+.. .....+... ++|+.|++++|....+|.. .+++|+.|.+++|.
T Consensus 177 ~~-~~L~~L~L~~n~~l~~--------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTV--------IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TT-CEEEEEECTTCTTCCE--------ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CC-CCCCEEEcCCCCCccc--------CCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 22 5777777766531110 011234556 8999999999999888876 78999999999875
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=6.2e-14 Score=147.50 Aligned_cols=239 Identities=17% Similarity=0.147 Sum_probs=162.2
Q ss_pred HhhhcCcccccc---cccccc-----cCcccCCCCccceeeecCCCCc----ccchhh-------hcCCCccEEeccCCC
Q 044550 404 ELFSKLVFLRAL---RNWIRE-----IPENVGKLIHLKYLNLSELRIE----RIPETL-------CELYNLQKLDIRGCQ 464 (662)
Q Consensus 404 ~~~~~l~~Lrvl---~~~~~~-----lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~l~~~~ 464 (662)
..+..++.|+.+ +|.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 335566666666 455543 4556788999999999998655 345554 789999999999998
Q ss_pred CCcc-----CCccccccccccEEecCCCccccc----cCCcCCCC---------CCCCccCceeecCccC-CCCccCccc
Q 044550 465 YLRG-----LPAGIRKLMNMRSLLNDGTYLLKY----MPIGISRL---------TSLRTLEKFVVGGGVD-GGGTCRLES 525 (662)
Q Consensus 465 ~l~~-----lP~~i~~L~~L~~L~l~~~~~~~~----~p~~i~~L---------~~L~~L~~~~~~~~~~-~~~~~~l~~ 525 (662)
+.. +|..+..+++|++|++++|..... ++..+..+ ++|++|++. .+... ...+.....
T Consensus 106 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~--~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 106 -FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG--RNRLENGSMKEWAKT 182 (386)
T ss_dssp -CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC--SSCCTGGGHHHHHHH
T ss_pred -CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC--CCCCCcHHHHHHHHH
Confidence 544 788899999999999999976322 23333334 788888643 33321 011111124
Q ss_pred cccCcccCccccccCCCCCCCC--ChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEee
Q 044550 526 LKNLQLLRKCSIEGLKGLSNVS--HVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIES 603 (662)
Q Consensus 526 L~~L~~L~~L~i~~~~~~~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 603 (662)
+..+++|+.|.+.+. .+. .........+..+++|+.|+++++.. .......+...+..+++|++|++++
T Consensus 183 l~~~~~L~~L~L~~n----~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l-----~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQN----GIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-----THLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp HHHCTTCCEEECCSS----CCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-----HHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHhCCCcCEEECcCC----CCCHhHHHHHHHHHhhcCCCccEEECcCCCC-----CcHHHHHHHHHHccCCCcCEEECCC
Confidence 556667777777664 112 11123333677889999999988753 1111244556777889999999999
Q ss_pred cCCCC-----CCcccc--cccCccEEEecCCCCCCCCCCCCC-----cc-cceeecccccCccEeCCcccC
Q 044550 604 YRGNI-----FPKWLT--SLTNLRELKLSLCVNCEHLPPLGK-----LP-LEKLQLKNLKSVKRVGNEFLG 661 (662)
Q Consensus 604 ~~~~~-----lP~~i~--~l~~L~~L~L~~~~~~~~lp~l~~-----Lp-L~~l~l~~l~~L~~~~n~~~g 661 (662)
|.... +|.++. .+++|++|+|++|. ++. +| ...-++.+++.|++.+|.|++
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-------i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-------IELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-------CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCc-------CCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 98654 356664 38999999999997 444 67 433457889999999999886
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=4.6e-12 Score=119.60 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=63.9
Q ss_pred CCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCcc
Q 044550 427 GKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506 (662)
Q Consensus 427 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 506 (662)
..+++|++|++++|.++.+| .+..+++|++|++++|. +..+| .+..+++|++|++++|......|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56788999999999998888 68899999999999885 66554 68889999999999987655567778888888877
Q ss_pred C
Q 044550 507 E 507 (662)
Q Consensus 507 ~ 507 (662)
+
T Consensus 118 ~ 118 (197)
T 4ezg_A 118 D 118 (197)
T ss_dssp E
T ss_pred E
Confidence 5
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.31 E-value=3.4e-12 Score=132.15 Aligned_cols=217 Identities=20% Similarity=0.199 Sum_probs=115.7
Q ss_pred cCcccccccccccccCc-ccCCCCccceeeecCCCCc-ccch-hhhcCCCccEEeccCCCCCccC-CccccccccccEEe
Q 044550 408 KLVFLRALRNWIREIPE-NVGKLIHLKYLNLSELRIE-RIPE-TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLL 483 (662)
Q Consensus 408 ~l~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~-~lp~-~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~ 483 (662)
+++.|..-+|.++.+|. .|.+|++|++|+|++|.+. .+|. .+.+|.+|+.+.+.++..+..+ |..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34444444566666654 3566777777777777653 3443 3566666655433332235555 34456677777777
Q ss_pred cCCCccccccCC-cCCCCCCCCccCceeecCccCCC-CccCccccccCcccCccccccCCCCCCCCChhhhhhccccccc
Q 044550 484 NDGTYLLKYMPI-GISRLTSLRTLEKFVVGGGVDGG-GTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKK 561 (662)
Q Consensus 484 l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~-~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~ 561 (662)
+++|.. ..+|. .+....++..|+ ..++..... ....+..+. ..++.|.+.+- .+. .+. .......
T Consensus 111 l~~n~l-~~~~~~~~~~~~~l~~l~--l~~~~~i~~l~~~~f~~~~--~~l~~L~L~~N----~i~---~i~-~~~f~~~ 177 (350)
T 4ay9_X 111 ISNTGI-KHLPDVHKIHSLQKVLLD--IQDNINIHTIERNSFVGLS--FESVILWLNKN----GIQ---EIH-NSAFNGT 177 (350)
T ss_dssp EEEECC-SSCCCCTTCCBSSCEEEE--EESCTTCCEECTTSSTTSB--SSCEEEECCSS----CCC---EEC-TTSSTTE
T ss_pred cccccc-ccCCchhhcccchhhhhh--hccccccccccccchhhcc--hhhhhhccccc----ccc---CCC-hhhcccc
Confidence 766654 33332 233333444443 111111000 011111111 11222222210 001 110 1112334
Q ss_pred cCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-
Q 044550 562 NLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP- 640 (662)
Q Consensus 562 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp- 640 (662)
+|+.|.+..+..+... ..+.+..+++|+.|++++|.+..+|.+ .+.+|++|.+.+|..++.+|.+..|+
T Consensus 178 ~L~~l~l~~~n~l~~i--------~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~ 247 (350)
T 4ay9_X 178 QLDELNLSDNNNLEEL--------PNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVA 247 (350)
T ss_dssp EEEEEECTTCTTCCCC--------CTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCS
T ss_pred chhHHhhccCCcccCC--------CHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcC
Confidence 5666666543321100 012346678999999999999999975 47889999999998889999999999
Q ss_pred cceeecc
Q 044550 641 LEKLQLK 647 (662)
Q Consensus 641 L~~l~l~ 647 (662)
|+.+.+.
T Consensus 248 L~~l~l~ 254 (350)
T 4ay9_X 248 LMEASLT 254 (350)
T ss_dssp CCEEECS
T ss_pred hhhCcCC
Confidence 9988875
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=7e-12 Score=127.46 Aligned_cols=203 Identities=16% Similarity=0.066 Sum_probs=134.1
Q ss_pred cCccccccccccc-ccCccc--CCCCccceeeecCCCCccc-c----hhhhcCCCccEEeccCCCCCccCCccccccccc
Q 044550 408 KLVFLRALRNWIR-EIPENV--GKLIHLKYLNLSELRIERI-P----ETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNM 479 (662)
Q Consensus 408 ~l~~Lrvl~~~~~-~lp~~i--~~l~~Lr~L~L~~~~i~~l-p----~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L 479 (662)
+++.|.+-+|.+. ..|..+ ..+++|++|+|++|.+... | ..+..+++|++|++++|......|..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 3444444466665 456666 8899999999999998852 2 345679999999999999444445688999999
Q ss_pred cEEecCCCccccc--c--CCcCCCCCCCCccCceeecCccCCCCccCccc-cccCcccCccccccCCCCCCCCChhhhhh
Q 044550 480 RSLLNDGTYLLKY--M--PIGISRLTSLRTLEKFVVGGGVDGGGTCRLES-LKNLQLLRKCSIEGLKGLSNVSHVDEVER 554 (662)
Q Consensus 480 ~~L~l~~~~~~~~--~--p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~-L~~L~~L~~L~i~~~~~~~~~~~~~~~~~ 554 (662)
++|++++|..... + +..++.+++|++|++. ++... ..+..... +..+++|+.|.+++-. +........
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls--~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~----l~~~~p~~~ 244 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR--NTGME-TPTGVCAALAAAGVQPHSLDLSHNS----LRATVNPSA 244 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC--SSCCC-CHHHHHHHHHHHTCCCSSEECTTSC----CCCCCCSCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECC--CCCCC-chHHHHHHHHhcCCCCCEEECCCCC----CCccchhhH
Confidence 9999999975331 3 2335789999999743 33321 11111111 2455666666665531 111100001
Q ss_pred ccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCC
Q 044550 555 LQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNC 630 (662)
Q Consensus 555 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~ 630 (662)
..+...++|+.|+++.+... .+...+ +++|+.|++++|....+|. +..+++|+.|+|++|...
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~----------~lp~~~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE----------QVPKGL--PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC----------SCCSCC--CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred HhccCcCcCCEEECCCCCCC----------chhhhh--cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 11223379999999887641 112222 3799999999999888876 678999999999999743
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.26 E-value=4.5e-11 Score=117.43 Aligned_cols=118 Identities=24% Similarity=0.317 Sum_probs=87.3
Q ss_pred eeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccC-cccCCCCccceeeecCCCCcccch-hhhcCC
Q 044550 376 VRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIP-ENVGKLIHLKYLNLSELRIERIPE-TLCELY 453 (662)
Q Consensus 376 ~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~ 453 (662)
.+.+.+....+..+|..+ ...++.|.+-++.+..++ ..+.++++|++|+|++|.++.+++ .+.+++
T Consensus 16 ~~~l~~~~~~l~~~p~~~------------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 83 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGI------------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83 (251)
T ss_dssp GTEEECTTCCCSSCCSCC------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CeEEecCCCCccccCCCC------------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC
Confidence 345555555555555433 234455555567777764 468889999999999999998765 578999
Q ss_pred CccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCCc-CCCCCCCCccC
Q 044550 454 NLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPIG-ISRLTSLRTLE 507 (662)
Q Consensus 454 ~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~ 507 (662)
+|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.. ++.+++|++|+
T Consensus 84 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 84 ELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcC-CCcChhHhccCCcccEEE
Confidence 99999999998 666664 568899999999999976 555554 68888998886
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=1.1e-11 Score=135.55 Aligned_cols=182 Identities=16% Similarity=0.100 Sum_probs=111.2
Q ss_pred ccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccc
Q 044550 411 FLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLL 490 (662)
Q Consensus 411 ~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~ 490 (662)
.|..-++.+..+|..+. ++|++|+|++|.++.+| +.+++|++|++++|. +..+|. +.+ +|++|++++|..
T Consensus 63 ~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N~l- 132 (571)
T 3cvr_A 63 ELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNNQL- 132 (571)
T ss_dssp EEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSSCC-
T ss_pred EEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCCcC-
Confidence 33333556666776663 67888888888877777 456778888888776 666777 554 788888877764
Q ss_pred cccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEe
Q 044550 491 KYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQF 570 (662)
Q Consensus 491 ~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 570 (662)
..+|. .+++|+.|++ .++.... +.. .+++|+.|.+++.. +..++. +. ++|+.|+++.
T Consensus 133 ~~lp~---~l~~L~~L~L--s~N~l~~-----lp~--~l~~L~~L~Ls~N~----L~~lp~-----l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 133 TMLPE---LPALLEYINA--DNNQLTM-----LPE--LPTSLEVLSVRNNQ----LTFLPE-----LP--ESLEALDVST 189 (571)
T ss_dssp SCCCC---CCTTCCEEEC--CSSCCSC-----CCC--CCTTCCEEECCSSC----CSCCCC-----CC--TTCCEEECCS
T ss_pred CCCCC---cCccccEEeC--CCCccCc-----CCC--cCCCcCEEECCCCC----CCCcch-----hh--CCCCEEECcC
Confidence 44666 5677777753 2332211 111 23445555544421 111111 22 6788888877
Q ss_pred cCCCCCCCCchhHHHHhhh-CCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCC
Q 044550 571 GGDIEGRRKNEKDKQLLEA-LQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEH 632 (662)
Q Consensus 571 ~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~ 632 (662)
+....... +... ..+++.|+.|++++|.+..+|.++..+++|++|+|++|.....
T Consensus 190 N~L~~lp~-------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 190 NLLESLPA-------VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp SCCSSCCC-------CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred CCCCchhh-------HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 65310000 0001 1222344999999999999999999999999999999986543
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.24 E-value=1.7e-11 Score=121.29 Aligned_cols=157 Identities=18% Similarity=0.131 Sum_probs=111.8
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI 495 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~ 495 (662)
.+.+..++ .+..+.+|++|++++|.++.+| .++.+++|++|++++|. +..+|. +..+++|++|++++|.. ..+|.
T Consensus 28 ~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~l-~~l~~ 102 (263)
T 1xeu_A 28 KQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRL-KNLNG 102 (263)
T ss_dssp CSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSCC-SCCTT
T ss_pred CCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCcc-CCcCc
Confidence 45677766 5778899999999999999887 78899999999999987 777877 88999999999999865 55554
Q ss_pred cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCC
Q 044550 496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE 575 (662)
Q Consensus 496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 575 (662)
... ++|+.|++. ++.. ..+.. +..+++|+.|+++.+...
T Consensus 103 ~~~--~~L~~L~L~--~N~l-----~~~~~-------------------------------l~~l~~L~~L~Ls~N~i~- 141 (263)
T 1xeu_A 103 IPS--ACLSRLFLD--NNEL-----RDTDS-------------------------------LIHLKNLEILSIRNNKLK- 141 (263)
T ss_dssp CCC--SSCCEEECC--SSCC-----SBSGG-------------------------------GTTCTTCCEEECTTSCCC-
T ss_pred ccc--CcccEEEcc--CCcc-----CCChh-------------------------------hcCcccccEEECCCCcCC-
Confidence 322 666666422 2211 01111 334455555655544320
Q ss_pred CCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550 576 GRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 576 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~ 629 (662)
. +..+..+++|+.|++++|....+ ..+..+++|+.|++++|..
T Consensus 142 ----~------~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 142 ----S------IVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ----B------CGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred ----C------ChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 0 12345578999999999998776 5778999999999999974
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.24 E-value=2.3e-11 Score=125.87 Aligned_cols=212 Identities=17% Similarity=0.167 Sum_probs=133.3
Q ss_pred ccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCcccccc-
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYM- 493 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~- 493 (662)
+.++++|..+. .++++|+|++|.|+.+|+ .+.+|++|++|+|++|...+.+|. .+.++++|..+...++..+..+
T Consensus 19 ~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 19 SKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 46888888773 689999999999999987 589999999999999996676775 4688999887555443334555
Q ss_pred CCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccc-ccCCcEEEEecC
Q 044550 494 PIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNK-KNLLRLGLQFGG 572 (662)
Q Consensus 494 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~ 572 (662)
|..++.+++|+.|++.... .....+....... ++..+.+.... .+. .+....+..+ ..++.|+++.+.
T Consensus 97 ~~~f~~l~~L~~L~l~~n~--l~~~~~~~~~~~~---~l~~l~l~~~~---~i~---~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTG--IKHLPDVHKIHSL---QKVLLDIQDNI---NIH---TIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp TTSBCCCTTCCEEEEEEEC--CSSCCCCTTCCBS---SCEEEEEESCT---TCC---EECTTSSTTSBSSCEEEECCSSC
T ss_pred chhhhhccccccccccccc--cccCCchhhcccc---hhhhhhhcccc---ccc---cccccchhhcchhhhhhcccccc
Confidence 5668999999999754332 2111111111111 12223333221 111 1111122232 356777777654
Q ss_pred CCCCCCCchhHHHHhhhCCCCCCCcEEEEee-cCCCCCCcc-cccccCccEEEecCCCCCCCCCCCCCcc-cceeecccc
Q 044550 573 DIEGRRKNEKDKQLLEALQPPLNVEELEIES-YRGNIFPKW-LTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNL 649 (662)
Q Consensus 573 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~-~~~~~lP~~-i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l 649 (662)
.. .+........+|++|.+.+ +....+|.. +..+++|++|+|++|. .+.+|. +.+. |+.|.+.++
T Consensus 166 i~----------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~-~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 166 IQ----------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS-YGLENLKKLRARST 233 (350)
T ss_dssp CC----------EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS-SSCTTCCEEECTTC
T ss_pred cc----------CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh-hhhccchHhhhccC
Confidence 30 1122333456899999975 667788864 5799999999999996 456664 3344 555554444
Q ss_pred cCcc
Q 044550 650 KSVK 653 (662)
Q Consensus 650 ~~L~ 653 (662)
..++
T Consensus 234 ~~l~ 237 (350)
T 4ay9_X 234 YNLK 237 (350)
T ss_dssp TTCC
T ss_pred CCcC
Confidence 4433
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.23 E-value=3.4e-11 Score=121.05 Aligned_cols=173 Identities=21% Similarity=0.179 Sum_probs=116.1
Q ss_pred hcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCC
Q 044550 407 SKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDG 486 (662)
Q Consensus 407 ~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~ 486 (662)
.+++.|.+-++.+..++ .+..+++|++|++++|.++.+|+ ++++++|++|++++|. +..+|. +..+++|++|++++
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECTT
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECCC
Confidence 33444444356666664 47778888888888888888876 8888888888888887 666654 88888888888888
Q ss_pred CccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcE
Q 044550 487 TYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRL 566 (662)
Q Consensus 487 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 566 (662)
|.. ..+ +.++.+++|+.|++. .+.. ..+..+..+++|+.|.+++. .+.... . +..+++|+.|
T Consensus 122 n~i-~~~-~~l~~l~~L~~L~l~--~n~l-----~~~~~l~~l~~L~~L~L~~N----~l~~~~---~--l~~l~~L~~L 183 (291)
T 1h6t_A 122 NGI-SDI-NGLVHLPQLESLYLG--NNKI-----TDITVLSRLTKLDTLSLEDN----QISDIV---P--LAGLTKLQNL 183 (291)
T ss_dssp SCC-CCC-GGGGGCTTCCEEECC--SSCC-----CCCGGGGGCTTCSEEECCSS----CCCCCG---G--GTTCTTCCEE
T ss_pred CcC-CCC-hhhcCCCCCCEEEcc--CCcC-----CcchhhccCCCCCEEEccCC----ccccch---h--hcCCCccCEE
Confidence 865 444 457778888888633 2322 12345556666666666553 112211 1 6677888999
Q ss_pred EEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc
Q 044550 567 GLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW 612 (662)
Q Consensus 567 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~ 612 (662)
+++.+... .+..+..+++|+.|++++|.....|..
T Consensus 184 ~L~~N~i~-----------~l~~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 184 YLSKNHIS-----------DLRALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp ECCSSCCC-----------BCGGGTTCTTCSEEEEEEEEEECCCEE
T ss_pred ECCCCcCC-----------CChhhccCCCCCEEECcCCcccCCccc
Confidence 88876531 023466788999999999886665543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=3.1e-11 Score=131.97 Aligned_cols=177 Identities=18% Similarity=0.182 Sum_probs=122.2
Q ss_pred ccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCcee
Q 044550 431 HLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFV 510 (662)
Q Consensus 431 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 510 (662)
+|++|++++|.++.+|..+. ++|++|++++|. +..+| ..+++|++|++++|.. ..+|. ++. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~L-- 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDV-- 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEEC--
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEEC--
Confidence 89999999999999999774 899999999998 78899 4689999999999976 56888 665 8888863
Q ss_pred ecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhC
Q 044550 511 VGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEAL 590 (662)
Q Consensus 511 ~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 590 (662)
.+|.... +.. .+++|+.|.+++.. +..++. .+++|+.|+++.+.... +.. +
T Consensus 128 s~N~l~~-----lp~--~l~~L~~L~Ls~N~----l~~lp~-------~l~~L~~L~Ls~N~L~~----------lp~-l 178 (571)
T 3cvr_A 128 DNNQLTM-----LPE--LPALLEYINADNNQ----LTMLPE-------LPTSLEVLSVRNNQLTF----------LPE-L 178 (571)
T ss_dssp CSSCCSC-----CCC--CCTTCCEEECCSSC----CSCCCC-------CCTTCCEEECCSSCCSC----------CCC-C
T ss_pred CCCcCCC-----CCC--cCccccEEeCCCCc----cCcCCC-------cCCCcCEEECCCCCCCC----------cch-h
Confidence 3333321 222 45566666665431 111111 35789999998875310 111 2
Q ss_pred CCCCCCcEEEEeecCCCCCCcccccccCc-------cEEEecCCCCCCCCCC-CCCcccceeecccccCccEeCCcccC
Q 044550 591 QPPLNVEELEIESYRGNIFPKWLTSLTNL-------RELKLSLCVNCEHLPP-LGKLPLEKLQLKNLKSVKRVGNEFLG 661 (662)
Q Consensus 591 ~~~~~L~~L~l~~~~~~~lP~~i~~l~~L-------~~L~L~~~~~~~~lp~-l~~LpL~~l~l~~l~~L~~~~n~~~g 661 (662)
. ++|+.|++++|.+..+|. +.. +| +.|+|++|... .+|. ++. +.++..|++.+|.|+|
T Consensus 179 ~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-------l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-------LDPTCTIILEDNPLSS 244 (571)
T ss_dssp C--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-------SCTTEEEECCSSSCCH
T ss_pred h--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-------CCCCCEEEeeCCcCCC
Confidence 2 899999999999999998 554 67 99999999733 3443 333 4455555566666654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.19 E-value=5.3e-11 Score=131.53 Aligned_cols=173 Identities=21% Similarity=0.180 Sum_probs=124.8
Q ss_pred hcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCC
Q 044550 407 SKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDG 486 (662)
Q Consensus 407 ~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~ 486 (662)
..++.|.+-++.+..+| .+..|++|++|+|++|.+..+|+ ++++++|+.|+|++|. +..+| .+..+++|++|++++
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecC
Confidence 33333433356777776 58889999999999999998887 9999999999999997 77776 689999999999999
Q ss_pred CccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcE
Q 044550 487 TYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRL 566 (662)
Q Consensus 487 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 566 (662)
|.. ..+ +.++.|++|+.|++. .+.. ..+..+..|.+|+.|.+++. .+... .. +..+++|+.|
T Consensus 119 N~l-~~l-~~l~~l~~L~~L~Ls--~N~l-----~~l~~l~~l~~L~~L~Ls~N----~l~~~---~~--l~~l~~L~~L 180 (605)
T 1m9s_A 119 NGI-SDI-NGLVHLPQLESLYLG--NNKI-----TDITVLSRLTKLDTLSLEDN----QISDI---VP--LAGLTKLQNL 180 (605)
T ss_dssp SCC-CCC-GGGGGCTTCSEEECC--SSCC-----CCCGGGGSCTTCSEEECCSS----CCCCC---GG--GTTCTTCCEE
T ss_pred CCC-CCC-ccccCCCccCEEECC--CCcc-----CCchhhcccCCCCEEECcCC----cCCCc---hh--hccCCCCCEE
Confidence 975 444 458888999998743 3332 12355666677777777654 11221 11 6778899999
Q ss_pred EEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc
Q 044550 567 GLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW 612 (662)
Q Consensus 567 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~ 612 (662)
+|+.+... .+..+..+++|+.|+|++|.....|..
T Consensus 181 ~Ls~N~i~-----------~l~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 181 YLSKNHIS-----------DLRALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp ECCSSCCC-----------BCGGGTTCTTCSEEECCSEEEECCCCC
T ss_pred ECcCCCCC-----------CChHHccCCCCCEEEccCCcCcCCccc
Confidence 99877531 023467789999999999987665543
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=5.3e-11 Score=112.20 Aligned_cols=101 Identities=13% Similarity=0.186 Sum_probs=76.5
Q ss_pred hhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550 406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND 485 (662)
Q Consensus 406 ~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~ 485 (662)
+.+++.|.+-++.+..+| .+..+++|++|++++|.++.+| .++++++|++|++++|......|..+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 444444444466777777 6888888999999988777664 68888899999998887434467778888899999998
Q ss_pred CCccccccCCcCCCCCCCCccCc
Q 044550 486 GTYLLKYMPIGISRLTSLRTLEK 508 (662)
Q Consensus 486 ~~~~~~~~p~~i~~L~~L~~L~~ 508 (662)
+|......|..++.+++|++|++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCccCcHhHHHHhhCCCCCEEEc
Confidence 88765556777888888888863
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.13 E-value=8.4e-11 Score=111.89 Aligned_cols=87 Identities=26% Similarity=0.435 Sum_probs=54.6
Q ss_pred ccccccCcccCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCccccccC
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMP 494 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p 494 (662)
+.+..+|..+ ..+|++|++++|.++.+|.. +.++++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|
T Consensus 17 ~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~ 92 (208)
T 2o6s_A 17 QGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQL-QSLP 92 (208)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCC
T ss_pred CCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcC-CccC
Confidence 3455555544 34677777777777766553 5677777777777766 5555543 46677777777777754 3444
Q ss_pred C-cCCCCCCCCccC
Q 044550 495 I-GISRLTSLRTLE 507 (662)
Q Consensus 495 ~-~i~~L~~L~~L~ 507 (662)
. .++.+++|++|+
T Consensus 93 ~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 93 NGVFDKLTQLKELA 106 (208)
T ss_dssp TTTTTTCTTCCEEE
T ss_pred HhHhcCccCCCEEE
Confidence 3 356666676665
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.12 E-value=2.5e-12 Score=138.53 Aligned_cols=186 Identities=18% Similarity=0.091 Sum_probs=96.5
Q ss_pred ccceeeecCCCCc-----ccchhhhcCCCccEEeccCCCCCcc-CCcccc-----ccccccEEecCCCcccc----ccCC
Q 044550 431 HLKYLNLSELRIE-----RIPETLCELYNLQKLDIRGCQYLRG-LPAGIR-----KLMNMRSLLNDGTYLLK----YMPI 495 (662)
Q Consensus 431 ~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~-lP~~i~-----~L~~L~~L~l~~~~~~~----~~p~ 495 (662)
+|++|++++|.++ .+|..+.++++|++|++++|. +.. -+..+. ..++|++|++++|.... .++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 5777777777766 456667777777777777766 322 122221 24467777777775432 2344
Q ss_pred cCCCCCCCCccCceeecCccCCCCccCcc-ccc-cCcccCccccccCCCCCCCCC-hhhhhhccccccccCCcEEEEecC
Q 044550 496 GISRLTSLRTLEKFVVGGGVDGGGTCRLE-SLK-NLQLLRKCSIEGLKGLSNVSH-VDEVERLQLYNKKNLLRLGLQFGG 572 (662)
Q Consensus 496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~-~L~-~L~~L~~L~i~~~~~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~ 572 (662)
.+..+++|++|++. ++.........+. .+. .+.+|+.|.+.+.. +.. ........+..+++|+.|+++.+.
T Consensus 165 ~l~~~~~L~~L~L~--~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~----l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 165 VLRAKPDFKELTVS--NNDINEAGVRVLCQGLKDSPCQLEALKLESCG----VTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHCTTCCEEECC--SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC----CBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHhhCCCCCEEECc--CCCcchHHHHHHHHHHhcCCCCceEEEccCCC----CcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 45556677777532 2211000000111 011 13345555555431 111 111122334566778888777654
Q ss_pred CCCCCCCchhHHHHhhh-CCCCCCCcEEEEeecCCCC-----CCcccccccCccEEEecCCC
Q 044550 573 DIEGRRKNEKDKQLLEA-LQPPLNVEELEIESYRGNI-----FPKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 573 ~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~~~~-----lP~~i~~l~~L~~L~L~~~~ 628 (662)
. ........... ..+.++|++|++++|.... +|..+..+++|++|+|++|.
T Consensus 239 l-----~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 239 L-----GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp C-----HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred C-----ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 2 00111111122 2346788888888877654 56666667788888888775
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.12 E-value=3.2e-10 Score=109.61 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=98.0
Q ss_pred cccccccCcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcccccc
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYM 493 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~ 493 (662)
++.+..+|..+. .+|++|+|++|.++.+ |..+.++.+|++|++++|. +..+|.. +..+++|++|++++|.. ..+
T Consensus 28 ~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l 103 (229)
T 3e6j_A 28 SKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL-TVL 103 (229)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCC
T ss_pred CCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcC-Ccc
Confidence 456777887664 7888999999988877 5678888899999998887 6777654 57888899999888865 444
Q ss_pred CC-cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecC
Q 044550 494 PI-GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGG 572 (662)
Q Consensus 494 p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 572 (662)
|. .++.+++|+.|++ ..+.. . .+
T Consensus 104 ~~~~~~~l~~L~~L~L--s~N~l-----------------~-----~l-------------------------------- 127 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFM--CCNKL-----------------T-----EL-------------------------------- 127 (229)
T ss_dssp CTTTTTTCTTCCEEEC--CSSCC-----------------C-----SC--------------------------------
T ss_pred ChhHhCcchhhCeEec--cCCcc-----------------c-----cc--------------------------------
Confidence 43 3566666666642 11110 0 00
Q ss_pred CCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCC
Q 044550 573 DIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVN 629 (662)
Q Consensus 573 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~ 629 (662)
...+..+++|+.|++++|.+..+|. .+..+++|+.|+|++|..
T Consensus 128 --------------p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 128 --------------PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp --------------CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred --------------CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 0111234677788888888777774 466899999999999973
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.12 E-value=3.9e-10 Score=108.25 Aligned_cols=87 Identities=25% Similarity=0.397 Sum_probs=59.0
Q ss_pred ccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCccccccC
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLKYMP 494 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p 494 (662)
+.+..+|..+. .+|++|++++|.++.+|+ .+.++.+|+.|++++|. +..+ |..+..+++|++|++++|.. ..+|
T Consensus 21 ~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~ 96 (220)
T 2v9t_B 21 KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKI-TELP 96 (220)
T ss_dssp SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCC-CCCC
T ss_pred CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcC-CccC
Confidence 45666666554 577777777777777765 57777777777777777 4444 66777777777777777764 4555
Q ss_pred Cc-CCCCCCCCccC
Q 044550 495 IG-ISRLTSLRTLE 507 (662)
Q Consensus 495 ~~-i~~L~~L~~L~ 507 (662)
.. ++.+++|+.|+
T Consensus 97 ~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 97 KSLFEGLFSLQLLL 110 (220)
T ss_dssp TTTTTTCTTCCEEE
T ss_pred HhHccCCCCCCEEE
Confidence 43 46666666664
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=1.8e-10 Score=119.66 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=60.4
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchh-hh-cCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccc
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPET-LC-ELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKY 492 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~ 492 (662)
++.+..+|..+. ..+++|+|++|.++.+|.. +. ++.+|++|++++|. +..+| ..+..+++|++|++++|.....
T Consensus 27 ~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 103 (361)
T 2xot_A 27 KQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTL 103 (361)
T ss_dssp SSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcC
Confidence 345666776554 3577888888888877664 33 78888888888877 55555 4577788888888888765333
Q ss_pred cCCcCCCCCCCCccC
Q 044550 493 MPIGISRLTSLRTLE 507 (662)
Q Consensus 493 ~p~~i~~L~~L~~L~ 507 (662)
.+..+..+++|+.|+
T Consensus 104 ~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 104 DEFLFSDLQALEVLL 118 (361)
T ss_dssp CTTTTTTCTTCCEEE
T ss_pred CHHHhCCCcCCCEEE
Confidence 333466777777775
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.09 E-value=7.8e-11 Score=133.52 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=91.0
Q ss_pred chHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccccccc
Q 044550 402 LSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMN 478 (662)
Q Consensus 402 ~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~ 478 (662)
++..+..+..|+.| +|.+..+|..++.+.+|++|+|++|.++.+|..|++|.+|++|+|++|. +..+|..++.|++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence 35557777888887 5788899999999999999999999999999999999999999999998 7799999999999
Q ss_pred ccEEecCCCccccccCCcCCCCCCCCccCc
Q 044550 479 MRSLLNDGTYLLKYMPIGISRLTSLRTLEK 508 (662)
Q Consensus 479 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 508 (662)
|++|++++|.+ ..+|..|+.|++|++|++
T Consensus 295 L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 295 LKYFYFFDNMV-TTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSEEECCSSCC-CCCCSSTTSCTTCCCEEC
T ss_pred CCEEECCCCCC-CccChhhhcCCCccEEeC
Confidence 99999999965 789999999999999973
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.09 E-value=7e-12 Score=130.45 Aligned_cols=215 Identities=16% Similarity=0.075 Sum_probs=130.3
Q ss_pred hHhhhcCcccccc---cccccccC-----cccCCCC-ccceeeecCCCCccc-chhhhcC-----CCccEEeccCCCCCc
Q 044550 403 SELFSKLVFLRAL---RNWIREIP-----ENVGKLI-HLKYLNLSELRIERI-PETLCEL-----YNLQKLDIRGCQYLR 467 (662)
Q Consensus 403 ~~~~~~l~~Lrvl---~~~~~~lp-----~~i~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~l~~~~~l~ 467 (662)
+.++...+.|+.+ +|.+...+ ..+..++ +|++|+|++|.+... +..++.+ ++|++|++++|. +.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~ 93 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LS 93 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CC
Confidence 3334444445555 56777665 5677788 899999999998865 5566665 999999999998 55
Q ss_pred cC-Cccc----ccc-ccccEEecCCCccccccCCc----CCCC-CCCCccCceeecCccCCCCccCc-cccccCc-ccCc
Q 044550 468 GL-PAGI----RKL-MNMRSLLNDGTYLLKYMPIG----ISRL-TSLRTLEKFVVGGGVDGGGTCRL-ESLKNLQ-LLRK 534 (662)
Q Consensus 468 ~l-P~~i----~~L-~~L~~L~l~~~~~~~~~p~~----i~~L-~~L~~L~~~~~~~~~~~~~~~~l-~~L~~L~-~L~~ 534 (662)
.. +..+ ..+ ++|++|++++|......+.. +..+ ++|++|++. ++.........+ ..+..+. .|+.
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls--~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR--GNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT--TSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc--CCcCCHHHHHHHHHHHhcCCccccE
Confidence 44 3433 344 89999999999763322222 3343 588888643 333311111111 1223333 5666
Q ss_pred cccccCCCCCCCCChhhhhhcccccc-ccCCcEEEEecCCCCCCCCchhHHHHhhhCCC-CCCCcEEEEeecCCCCCCc-
Q 044550 535 CSIEGLKGLSNVSHVDEVERLQLYNK-KNLLRLGLQFGGDIEGRRKNEKDKQLLEALQP-PLNVEELEIESYRGNIFPK- 611 (662)
Q Consensus 535 L~i~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~lP~- 611 (662)
|.+++..- . ..........+..+ ++|+.|+++.+.. ...........+.. +++|++|++++|.....+.
T Consensus 172 L~Ls~n~l-~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 172 LNLRGNNL-A--SKNCAELAKFLASIPASVTSLDLSANLL-----GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp EECTTSCG-G--GSCHHHHHHHHHTSCTTCCEEECTTSCG-----GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred eeecCCCC-c--hhhHHHHHHHHHhCCCCCCEEECCCCCC-----ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 66665410 0 01111222234455 5999999987753 11111223333433 4689999999998766443
Q ss_pred ----ccccccCccEEEecCCC
Q 044550 612 ----WLTSLTNLRELKLSLCV 628 (662)
Q Consensus 612 ----~i~~l~~L~~L~L~~~~ 628 (662)
.+..+++|++|+|++|.
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHhcCCCccEEEeccCC
Confidence 34578999999999996
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.09 E-value=3.3e-10 Score=108.71 Aligned_cols=97 Identities=23% Similarity=0.330 Sum_probs=60.9
Q ss_pred cccccccccccccCc-ccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCC
Q 044550 410 VFLRALRNWIREIPE-NVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDG 486 (662)
Q Consensus 410 ~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~ 486 (662)
+.|.+-+|.+..+|. .+..+++|++|+|++|.++.+ |..+.++.+|++|++++|. +..+|.. +..+++|++|++++
T Consensus 35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCC
Confidence 333333556665544 566677777777777776665 5567777777777777766 5566554 45677777777777
Q ss_pred CccccccCCcCCCCCCCCccC
Q 044550 487 TYLLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 487 ~~~~~~~p~~i~~L~~L~~L~ 507 (662)
|......|..++.+++|+.|+
T Consensus 114 N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 114 NKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEeCHHHcCCCCCCCEEE
Confidence 765444455566666666665
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.07 E-value=4.4e-10 Score=107.83 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=55.6
Q ss_pred ccccccccccccCc--ccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCC
Q 044550 411 FLRALRNWIREIPE--NVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDG 486 (662)
Q Consensus 411 ~Lrvl~~~~~~lp~--~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~ 486 (662)
.|.+-+|.+..++. .+..+++|++|+|++|.++.+|+ .+.++.+|++|++++|. +..+|. .+..+++|++|++++
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTT
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCC
Confidence 33333455555522 25566666666666666666554 56666666666666666 444443 356666666666666
Q ss_pred CccccccCCcCCCCCCCCccC
Q 044550 487 TYLLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 487 ~~~~~~~p~~i~~L~~L~~L~ 507 (662)
|......|..++.+++|++|+
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEE
T ss_pred CcCCeECHhHcCCCccCCEEE
Confidence 655444455566666666664
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.07 E-value=6.7e-10 Score=101.62 Aligned_cols=122 Identities=25% Similarity=0.234 Sum_probs=84.3
Q ss_pred CCceeEEEEecCCCC--CcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcc-cc
Q 044550 373 GDNVRHLGLNFQRGA--SFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIER-IP 446 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~--~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~-lp 446 (662)
+..++.+.+..+.+. .+|.. +..++.|+.+ +|.+..+ ..++.+++|++|++++|.+.. +|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-------------~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-------------TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-------------CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred cccCCEEECCCCCCChhhHHHH-------------HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHH
Confidence 466777777776665 44322 2333444444 5666666 667778888888888888776 66
Q ss_pred hhhhcCCCccEEeccCCCCCccCC--ccccccccccEEecCCCccccccCC----cCCCCCCCCccCcee
Q 044550 447 ETLCELYNLQKLDIRGCQYLRGLP--AGIRKLMNMRSLLNDGTYLLKYMPI----GISRLTSLRTLEKFV 510 (662)
Q Consensus 447 ~~i~~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~ 510 (662)
..+.++++|++|++++|. +..+| ..+..+++|++|++++|.. ..+|. .+..+++|+.|++..
T Consensus 89 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp HHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEE
T ss_pred HHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCC
Confidence 667778888888888886 66665 5777888888888888865 45554 677778888777543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=4.6e-10 Score=116.57 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=80.7
Q ss_pred cCcccccccccccccCcc-cC-CCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEe
Q 044550 408 KLVFLRALRNWIREIPEN-VG-KLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLL 483 (662)
Q Consensus 408 ~l~~Lrvl~~~~~~lp~~-i~-~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~ 483 (662)
.++.|.+-+|.+..++.. +. .+.+|++|+|++|.|+.+|+ .+.++.+|++|+|++|. +..+|. .+..+++|++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEE
Confidence 344455446788888665 44 89999999999999998875 69999999999999998 666665 578999999999
Q ss_pred cCCCccccccCCcCCCCCCCCccC
Q 044550 484 NDGTYLLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 484 l~~~~~~~~~p~~i~~L~~L~~L~ 507 (662)
+++|......|..++.+++|+.|+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCcccEECHHHhCCcccCCEEE
Confidence 999987555567788888888885
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.01 E-value=1.3e-09 Score=122.26 Aligned_cols=200 Identities=17% Similarity=0.062 Sum_probs=112.9
Q ss_pred cCCCCccceeeecCCCCc---ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC-CcCCCCC
Q 044550 426 VGKLIHLKYLNLSELRIE---RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP-IGISRLT 501 (662)
Q Consensus 426 i~~l~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~ 501 (662)
...++.|++|++++|.+. ..|..+..+.+|++|++..+. ...++..+..+++|+.+++..+......+ ..+..++
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhcccccccccccccccc
Confidence 345777788888777755 345666777778888777766 55566667777777777777765433333 2355566
Q ss_pred CCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCch
Q 044550 502 SLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNE 581 (662)
Q Consensus 502 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 581 (662)
+|+.++.. .+......+..+ ..+..|+.|.+.+.. .........+..+++|+.|+++.+...
T Consensus 446 ~l~~l~ls--~n~l~~~~~~~~---~~~~~L~~L~Ls~N~------~~~~~~~~~~~~l~~L~~L~Ls~N~L~------- 507 (635)
T 4g8a_A 446 NLIYLDIS--HTHTRVAFNGIF---NGLSSLEVLKMAGNS------FQENFLPDIFTELRNLTFLDLSQCQLE------- 507 (635)
T ss_dssp TCCEEECT--TSCCEECCTTTT---TTCTTCCEEECTTCE------EGGGEECSCCTTCTTCCEEECTTSCCC-------
T ss_pred cccccccc--cccccccccccc---ccchhhhhhhhhhcc------cccccCchhhhhccccCEEECCCCccC-------
Confidence 66666422 222111112222 233334344443320 011112234556677888887766420
Q ss_pred hHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCCCCCCC-CCCCcc--cceeec
Q 044550 582 KDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVNCEHLP-PLGKLP--LEKLQL 646 (662)
Q Consensus 582 ~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp--L~~l~l 646 (662)
......+..+++|+.|+|++|.+..+|. .+..+++|++|+|++|+.....| .++.+| |+.|++
T Consensus 508 --~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 508 --QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp --EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred --CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 0012345567788888888888776654 46678888888888887443322 244443 444444
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.00 E-value=1.5e-09 Score=107.27 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=100.1
Q ss_pred hhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEE
Q 044550 406 FSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL 482 (662)
Q Consensus 406 ~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L 482 (662)
+..++.|+.+ ++.+..+| .+..+++|++|++++|.++.+|+ ++++++|++|++++|. +..+|.... ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccEE
Confidence 3444555555 57788887 78889999999999999999988 9999999999999998 778876433 899999
Q ss_pred ecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccccc
Q 044550 483 LNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKN 562 (662)
Q Consensus 483 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~ 562 (662)
++++|.. ..+| .++.+++|+.|++ ..+.. ..+..+..+++|+.|.+++. .+... ..+..+++
T Consensus 112 ~L~~N~l-~~~~-~l~~l~~L~~L~L--s~N~i-----~~~~~l~~l~~L~~L~L~~N----~i~~~-----~~l~~l~~ 173 (263)
T 1xeu_A 112 FLDNNEL-RDTD-SLIHLKNLEILSI--RNNKL-----KSIVMLGFLSKLEVLDLHGN----EITNT-----GGLTRLKK 173 (263)
T ss_dssp ECCSSCC-SBSG-GGTTCTTCCEEEC--TTSCC-----CBCGGGGGCTTCCEEECTTS----CCCBC-----TTSTTCCC
T ss_pred EccCCcc-CCCh-hhcCcccccEEEC--CCCcC-----CCChHHccCCCCCEEECCCC----cCcch-----HHhccCCC
Confidence 9999975 5554 5888999999863 23332 12234555555665555542 11111 23455666
Q ss_pred CCcEEEEecC
Q 044550 563 LLRLGLQFGG 572 (662)
Q Consensus 563 L~~L~l~~~~ 572 (662)
|+.|+++.+.
T Consensus 174 L~~L~l~~N~ 183 (263)
T 1xeu_A 174 VNWIDLTGQK 183 (263)
T ss_dssp CCEEEEEEEE
T ss_pred CCEEeCCCCc
Confidence 6666666553
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.00 E-value=1.4e-09 Score=104.23 Aligned_cols=124 Identities=23% Similarity=0.235 Sum_probs=97.3
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCc-ccCCCCccceeeecCCCCcccch-
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPE-NVGKLIHLKYLNLSELRIERIPE- 447 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~- 447 (662)
...++.|.+..+.+..++. +..|..++.|+.+ +|.+..++. .+..+.+|++|+|++|.++.+|+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~-----------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 99 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEA-----------TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK 99 (220)
T ss_dssp CTTCSEEECCSSCCCEECC-----------CCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred CCCCCEEEcCCCcCCccCc-----------hhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHh
Confidence 4455667766666654421 1125566666666 578888765 78999999999999999998876
Q ss_pred hhhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCccccccCCcCCCCCCCCccCc
Q 044550 448 TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEK 508 (662)
Q Consensus 448 ~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 508 (662)
.+.++++|++|++++|. +..+ |..+..+++|++|++++|......|..++.+++|+.|++
T Consensus 100 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp GGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred HhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 48999999999999998 5555 778999999999999999875555788999999999863
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=3.4e-10 Score=101.30 Aligned_cols=70 Identities=29% Similarity=0.324 Sum_probs=32.2
Q ss_pred ccccccCcccCCCCccceeeecCCCCcc-cchhhhcCCCccEEeccCCCCCccCC--ccccccccccEEecCCCc
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIER-IPETLCELYNLQKLDIRGCQYLRGLP--AGIRKLMNMRSLLNDGTY 488 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~ 488 (662)
|.+..+ ..++.+++|++|++++|.++. +|..++++++|++|++++|. +..+| ..++.+++|++|++++|.
T Consensus 52 n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 52 VGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp SCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence 333333 344444455555555554444 44444444555555555444 33332 344444455555554443
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.99 E-value=1.2e-09 Score=105.41 Aligned_cols=90 Identities=32% Similarity=0.451 Sum_probs=46.7
Q ss_pred ccccccc-CcccCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCccccc
Q 044550 416 RNWIREI-PENVGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKY 492 (662)
Q Consensus 416 ~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~ 492 (662)
+|.+..+ |..+..+++|++|+|++|.+..+|.. +.++.+|++|++++|. +..+|.. +..+++|++|++++|.. ..
T Consensus 49 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l-~~ 126 (229)
T 3e6j_A 49 DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKL-TE 126 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CS
T ss_pred CCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCcc-cc
Confidence 4444444 34455555555555555555555432 3555555555555554 4444432 34555555555555543 35
Q ss_pred cCCcCCCCCCCCccC
Q 044550 493 MPIGISRLTSLRTLE 507 (662)
Q Consensus 493 ~p~~i~~L~~L~~L~ 507 (662)
+|..++.+++|++|+
T Consensus 127 lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 127 LPRGIERLTHLTHLA 141 (229)
T ss_dssp CCTTGGGCTTCSEEE
T ss_pred cCcccccCCCCCEEE
Confidence 555555555555554
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=2.8e-11 Score=125.90 Aligned_cols=239 Identities=11% Similarity=0.057 Sum_probs=145.7
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCc-ccccc---ccccccc-CcccCCC-----CccceeeecCCCC
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLV-FLRAL---RNWIREI-PENVGKL-----IHLKYLNLSELRI 442 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~-~Lrvl---~~~~~~l-p~~i~~l-----~~Lr~L~L~~~~i 442 (662)
...++.|.+..+.+...+.. .+...+..++ .|+.+ +|.+... +..+..+ ++|++|+|++|.+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~--------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTV--------ELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHH--------HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CCCceEEEccCCCCChHHHH--------HHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 44577887777766543210 0112355455 55555 5666654 4445544 8999999999999
Q ss_pred cccch-h----hhcC-CCccEEeccCCCCCccCCc-cc----cc-cccccEEecCCCcccc----ccCCcCCCCC-CCCc
Q 044550 443 ERIPE-T----LCEL-YNLQKLDIRGCQYLRGLPA-GI----RK-LMNMRSLLNDGTYLLK----YMPIGISRLT-SLRT 505 (662)
Q Consensus 443 ~~lp~-~----i~~L-~~L~~L~l~~~~~l~~lP~-~i----~~-L~~L~~L~l~~~~~~~----~~p~~i~~L~-~L~~ 505 (662)
+..+. . +..+ ++|++|++++|. +...+. .+ .. .++|++|++++|.... .++..+..++ +|++
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 86544 3 5555 899999999998 655543 33 33 2699999999997642 3444455555 8999
Q ss_pred cCceeecCccCCCCccCcc-ccccC-cccCccccccCCCCCCCCC-hhhhhhccccc-cccCCcEEEEecCCCCCCCCch
Q 044550 506 LEKFVVGGGVDGGGTCRLE-SLKNL-QLLRKCSIEGLKGLSNVSH-VDEVERLQLYN-KKNLLRLGLQFGGDIEGRRKNE 581 (662)
Q Consensus 506 L~~~~~~~~~~~~~~~~l~-~L~~L-~~L~~L~i~~~~~~~~~~~-~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~ 581 (662)
|++ .++......+..+. .+..+ +.|+.|++++.. +.. ........+.. .++|+.|+++.+... ..
T Consensus 172 L~L--s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-----~~ 240 (362)
T 3goz_A 172 LNL--RGNNLASKNCAELAKFLASIPASVTSLDLSANL----LGLKSYAELAYIFSSIPNHVVSLNLCLNCLH-----GP 240 (362)
T ss_dssp EEC--TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHHHSCTTCCEEECCSSCCC-----CC
T ss_pred eee--cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC----CChhHHHHHHHHHhcCCCCceEEECcCCCCC-----cH
Confidence 964 33333222222222 23333 366666666541 111 00112223333 469999999987531 11
Q ss_pred hHHHHhhhCCCCCCCcEEEEeecCCCCC--------CcccccccCccEEEecCCCCCC
Q 044550 582 KDKQLLEALQPPLNVEELEIESYRGNIF--------PKWLTSLTNLRELKLSLCVNCE 631 (662)
Q Consensus 582 ~~~~~l~~l~~~~~L~~L~l~~~~~~~l--------P~~i~~l~~L~~L~L~~~~~~~ 631 (662)
........+...++|+.|++++|....+ +..+..+++|+.|+|++|....
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 2233345567789999999999974333 3345578899999999998543
No 119
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.99 E-value=1.9e-11 Score=131.74 Aligned_cols=233 Identities=17% Similarity=0.171 Sum_probs=138.8
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccc-----ccCcccCCCCccceeeecCCCCcc
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIR-----EIPENVGKLIHLKYLNLSELRIER 444 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~-----~lp~~i~~l~~Lr~L~L~~~~i~~ 444 (662)
+..++.+.+..+.+...+ +...+..++.|+.+ +|.+. .++..+..+++|++|++++|.+..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~-----------~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDAR-----------WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp CEEEEEEEEESCCCCHHH-----------HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred CccceehhhhhcccCchh-----------HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 456777888776665321 11224444555555 45555 457778888999999999999874
Q ss_pred c-chhhh-cCC----CccEEeccCCCCCc-----cCCccccccccccEEecCCCccccccCC----c-CCCCCCCCccCc
Q 044550 445 I-PETLC-ELY----NLQKLDIRGCQYLR-----GLPAGIRKLMNMRSLLNDGTYLLKYMPI----G-ISRLTSLRTLEK 508 (662)
Q Consensus 445 l-p~~i~-~L~----~L~~L~l~~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~~~~~p~----~-i~~L~~L~~L~~ 508 (662)
. +..+. .+. +|++|++++|. +. .+|..+..+++|++|++++|......+. . ...+++|++|++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEEC
Confidence 2 33333 455 69999999998 54 5688889999999999999975322222 1 223567888864
Q ss_pred eeecCccCCCCccC-ccccccCcccCccccccCCCCCCCCCh-hhhhhcccc-ccccCCcEEEEecCCCCCCCCchhHHH
Q 044550 509 FVVGGGVDGGGTCR-LESLKNLQLLRKCSIEGLKGLSNVSHV-DEVERLQLY-NKKNLLRLGLQFGGDIEGRRKNEKDKQ 585 (662)
Q Consensus 509 ~~~~~~~~~~~~~~-l~~L~~L~~L~~L~i~~~~~~~~~~~~-~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~ 585 (662)
. .+......... ...+..+++|+.|.+++.. +... .......+. ..++|+.|+++.+.. .......
T Consensus 150 ~--~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-----~~~~~~~ 218 (461)
T 1z7x_W 150 E--YCSLSAASCEPLASVLRAKPDFKELTVSNND----INEAGVRVLCQGLKDSPCQLEALKLESCGV-----TSDNCRD 218 (461)
T ss_dssp T--TSCCBGGGHHHHHHHHHHCTTCCEEECCSSB----CHHHHHHHHHHHHHHSCCCCCEEECTTSCC-----BTTHHHH
T ss_pred C--CCCCCHHHHHHHHHHHhhCCCCCEEECcCCC----cchHHHHHHHHHHhcCCCCceEEEccCCCC-----cHHHHHH
Confidence 3 22221111011 1233445666666666531 1110 001111111 345899999887753 1112223
Q ss_pred HhhhCCCCCCCcEEEEeecCCCCC------CcccccccCccEEEecCCC
Q 044550 586 LLEALQPPLNVEELEIESYRGNIF------PKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 586 ~l~~l~~~~~L~~L~l~~~~~~~l------P~~i~~l~~L~~L~L~~~~ 628 (662)
+...+..+++|++|++++|..... +.+...+++|++|+|++|.
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 444556678999999998864331 2223357899999999996
No 120
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.98 E-value=2.2e-11 Score=135.60 Aligned_cols=66 Identities=20% Similarity=0.141 Sum_probs=35.0
Q ss_pred cccCcccCCCCccceeeecCCCCc--ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550 420 REIPENVGKLIHLKYLNLSELRIE--RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND 485 (662)
Q Consensus 420 ~~lp~~i~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~ 485 (662)
..+|..+..+++|++|++++|.++ .++..+.++++|++|+++++..-..++.....+++|++|+++
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 334555555666666666666644 222335566666666666332112233333456666777666
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.98 E-value=2.6e-10 Score=102.08 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=78.6
Q ss_pred hcCccccccccccc--ccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCcc-CCccccccccccEEe
Q 044550 407 SKLVFLRALRNWIR--EIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRG-LPAGIRKLMNMRSLL 483 (662)
Q Consensus 407 ~~l~~Lrvl~~~~~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lP~~i~~L~~L~~L~ 483 (662)
.+++.|.+-+|.+. .+|..+..+++|++|++++|.++.+ ..++++++|++|++++|. +.. +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEE
Confidence 33444444456676 7888888999999999999999888 778999999999999998 555 787777899999999
Q ss_pred cCCCccccccC--CcCCCCCCCCccCc
Q 044550 484 NDGTYLLKYMP--IGISRLTSLRTLEK 508 (662)
Q Consensus 484 l~~~~~~~~~p--~~i~~L~~L~~L~~ 508 (662)
+++|.. ..+| ..++.+++|++|++
T Consensus 95 ls~N~i-~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 95 LSGNKI-KDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp CTTSCC-CSHHHHGGGGGCTTCCEEEC
T ss_pred CCCCcC-CChHHHHHHhhCCCCCEEeC
Confidence 999975 4443 67888888888863
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.96 E-value=1.3e-09 Score=102.13 Aligned_cols=98 Identities=21% Similarity=0.269 Sum_probs=63.5
Q ss_pred CcccccccccccccCcc--cCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCc-cccccccccEEec
Q 044550 409 LVFLRALRNWIREIPEN--VGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLN 484 (662)
Q Consensus 409 l~~Lrvl~~~~~~lp~~--i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l 484 (662)
++.|.+-+|.+..++.. ++.+++|++|+|++|.++.+ |..++++.+|++|++++|. +..+|. .+..+++|++|++
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEEC
T ss_pred CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEEC
Confidence 33444335666666543 66677777777777777766 5567777777777777776 444433 4667777777777
Q ss_pred CCCccccccCCcCCCCCCCCccC
Q 044550 485 DGTYLLKYMPIGISRLTSLRTLE 507 (662)
Q Consensus 485 ~~~~~~~~~p~~i~~L~~L~~L~ 507 (662)
++|......|..++.+++|+.|+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCcCCeeCHHHhhcCCCCCEEE
Confidence 77766555566677777777665
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.95 E-value=3.6e-09 Score=100.49 Aligned_cols=99 Identities=25% Similarity=0.446 Sum_probs=72.5
Q ss_pred hcCcccccccccccccCcc-cCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccCCcc-ccccccccEEe
Q 044550 407 SKLVFLRALRNWIREIPEN-VGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLL 483 (662)
Q Consensus 407 ~~l~~Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~ 483 (662)
.+++.|.+-++.+..+|.. +..+++|++|++++|.++.+|.. +.++.+|++|++++|. +..+|.. +..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEE
Confidence 3444454446677776654 57788899999998888888764 5788889999998887 6666654 57888899999
Q ss_pred cCCCccccccCC-cCCCCCCCCccC
Q 044550 484 NDGTYLLKYMPI-GISRLTSLRTLE 507 (662)
Q Consensus 484 l~~~~~~~~~p~-~i~~L~~L~~L~ 507 (662)
+++|.. ..+|. .++.+++|++|+
T Consensus 107 L~~N~l-~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 107 LNTNQL-QSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp CCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred cCCCcC-cccCHhHhccCCcCCEEE
Confidence 988865 44444 467778888775
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=1.7e-09 Score=99.72 Aligned_cols=124 Identities=21% Similarity=0.138 Sum_probs=85.2
Q ss_pred CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhh-hc
Q 044550 373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETL-CE 451 (662)
Q Consensus 373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~ 451 (662)
...++.+.+..+.+..+|. +. ....+++.|.+-+|.+..+ +.++.+++|++|++++|.++.+|+.+ ++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~---------~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LG---------ATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GG---------GGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCceEEEeeCCCCchhHH-hh---------hcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 5567777777776654421 11 1012344444445677766 56778888888888888888887655 78
Q ss_pred CCCccEEeccCCCCCccCCc--cccccccccEEecCCCccccccCCc----CCCCCCCCccCce
Q 044550 452 LYNLQKLDIRGCQYLRGLPA--GIRKLMNMRSLLNDGTYLLKYMPIG----ISRLTSLRTLEKF 509 (662)
Q Consensus 452 L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~ 509 (662)
+++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.. ++.+++|+.|++.
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTE
T ss_pred CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCC
Confidence 8888888888887 677776 677888888888888865 456654 6677777777643
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.94 E-value=6.4e-10 Score=101.76 Aligned_cols=97 Identities=23% Similarity=0.291 Sum_probs=72.4
Q ss_pred cCccccccccccc--ccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCcc-CCccccccccccEEec
Q 044550 408 KLVFLRALRNWIR--EIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRG-LPAGIRKLMNMRSLLN 484 (662)
Q Consensus 408 ~l~~Lrvl~~~~~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lP~~i~~L~~L~~L~l 484 (662)
+++.|.+-+|.+. .+|..+..+++|++|++++|.++.+ ..++++++|++|++++|. +.. +|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEec
Confidence 3344444456676 7787778888888888888888877 778888888888888887 444 7776777888888888
Q ss_pred CCCccccccC--CcCCCCCCCCccC
Q 044550 485 DGTYLLKYMP--IGISRLTSLRTLE 507 (662)
Q Consensus 485 ~~~~~~~~~p--~~i~~L~~L~~L~ 507 (662)
++|.. ..+| ..++.+++|+.|+
T Consensus 103 s~N~l-~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 103 SGNKL-KDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp BSSSC-CSSGGGGGGSSCSCCCEEE
T ss_pred cCCcc-CcchhHHHHhcCCCCCEEE
Confidence 88864 5544 5677777777775
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.94 E-value=7.4e-10 Score=121.61 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=71.7
Q ss_pred ccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCcee
Q 044550 431 HLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFV 510 (662)
Q Consensus 431 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 510 (662)
.|++|+|++|.++.+|. ++++++|++|++++|. +..+|..++.+++|++|++++|.. ..+| .++.|++|++|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp-~l~~l~~L~~L~L-- 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLL-- 515 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEEC--
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCC-CCCc-ccCCCCCCcEEEC--
Confidence 48888888888888886 8888888888888887 678888888888888888888865 5577 7888888888863
Q ss_pred ecCccCCCC-ccCccccccCcccCcccccc
Q 044550 511 VGGGVDGGG-TCRLESLKNLQLLRKCSIEG 539 (662)
Q Consensus 511 ~~~~~~~~~-~~~l~~L~~L~~L~~L~i~~ 539 (662)
.++...... +.. +..|++|+.|.+++
T Consensus 516 s~N~l~~~~~p~~---l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 516 CNNRLQQSAAIQP---LVSCPRLVLLNLQG 542 (567)
T ss_dssp CSSCCCSSSTTGG---GGGCTTCCEEECTT
T ss_pred CCCCCCCCCCcHH---HhcCCCCCEEEecC
Confidence 334332221 333 44444555554443
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.92 E-value=2.6e-09 Score=100.09 Aligned_cols=96 Identities=23% Similarity=0.335 Sum_probs=54.9
Q ss_pred cccccccccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCC
Q 044550 410 VFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGT 487 (662)
Q Consensus 410 ~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~ 487 (662)
+.|.+-+|.+..+|..+..+.+|++|+|++|.++.+|+ .+.++.+|++|++++|. +..+| ..+..+++|++|++++|
T Consensus 34 ~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC
Confidence 33333345555666666666666666666666665543 46666666666666665 44443 34566666666666666
Q ss_pred ccccccCC-cCCCCCCCCccC
Q 044550 488 YLLKYMPI-GISRLTSLRTLE 507 (662)
Q Consensus 488 ~~~~~~p~-~i~~L~~L~~L~ 507 (662)
.. ..+|. .+..+++|+.|+
T Consensus 113 ~l-~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 113 DI-SVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CC-CBCCTTTTTTCTTCCEEE
T ss_pred CC-CeeChhhhhcCccccEEE
Confidence 54 34443 355566666554
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.89 E-value=2.9e-09 Score=116.91 Aligned_cols=70 Identities=21% Similarity=0.237 Sum_probs=34.6
Q ss_pred ccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccC--CccccccccccEEecCCCc
Q 044550 417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGL--PAGIRKLMNMRSLLNDGTY 488 (662)
Q Consensus 417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l--P~~i~~L~~L~~L~l~~~~ 488 (662)
|.+..+|..++.|++|++|+|++|.++.+| .++++++|++|++++|. +..+ |..++.+++|+.|++++|.
T Consensus 473 N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 473 NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred ccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 444444555555555555555555555444 45555555555555544 3333 4445555555555555543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.89 E-value=5.7e-09 Score=97.71 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=76.5
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccccC
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYMP 494 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p 494 (662)
++.+..+|..+. .+|++|++++|.++.+|..+.++.+|++|++++|. +..+| ..+..+++|++|++++|......|
T Consensus 19 ~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~ 95 (193)
T 2wfh_A 19 NKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95 (193)
T ss_dssp TSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCH
Confidence 457788887764 68999999999999999999999999999999998 66665 568999999999999998744445
Q ss_pred CcCCCCCCCCccCc
Q 044550 495 IGISRLTSLRTLEK 508 (662)
Q Consensus 495 ~~i~~L~~L~~L~~ 508 (662)
..++.+++|+.|++
T Consensus 96 ~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 96 RTFDGLKSLRLLSL 109 (193)
T ss_dssp TTTTTCTTCCEEEC
T ss_pred HHhCCCCCCCEEEC
Confidence 57899999999863
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.88 E-value=4.5e-09 Score=98.41 Aligned_cols=91 Identities=23% Similarity=0.312 Sum_probs=76.4
Q ss_pred ccccccccCcccCCCCccceeeecCCCCcccchh--hhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCcccc
Q 044550 415 LRNWIREIPENVGKLIHLKYLNLSELRIERIPET--LCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLK 491 (662)
Q Consensus 415 l~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~ 491 (662)
.++.++.+|..+.. +|++|++++|.++.+|+. ++++++|++|++++|. +..+ |..+..+++|++|++++|....
T Consensus 16 s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 92 (192)
T 1w8a_A 16 TGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIKE 92 (192)
T ss_dssp TTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred CCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCcCCc
Confidence 35677888887754 899999999999998874 8999999999999998 5555 7789999999999999998755
Q ss_pred ccCCcCCCCCCCCccCc
Q 044550 492 YMPIGISRLTSLRTLEK 508 (662)
Q Consensus 492 ~~p~~i~~L~~L~~L~~ 508 (662)
..|..++.+++|++|++
T Consensus 93 ~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 93 ISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp ECSSSSTTCTTCCEEEC
T ss_pred cCHHHhcCCCCCCEEEC
Confidence 55566889999999963
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.87 E-value=7.5e-10 Score=123.17 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=52.3
Q ss_pred CCCCccceeeecCCCCc-----ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccc---cccCCcCC
Q 044550 427 GKLIHLKYLNLSELRIE-----RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLL---KYMPIGIS 498 (662)
Q Consensus 427 ~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~---~~~p~~i~ 498 (662)
..+++|++|++++|.++ .++..+.++++|++|++++|. +..+|..+..+++|++|+++.+... ...+..++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 45677778888777764 445556677888888888776 6667777777778888877653221 12234455
Q ss_pred CCCCCCccC
Q 044550 499 RLTSLRTLE 507 (662)
Q Consensus 499 ~L~~L~~L~ 507 (662)
.+++|+.|+
T Consensus 268 ~~~~L~~L~ 276 (592)
T 3ogk_B 268 FPRKLCRLG 276 (592)
T ss_dssp CCTTCCEEE
T ss_pred ccccccccC
Confidence 666666664
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.87 E-value=1.6e-09 Score=99.87 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=57.1
Q ss_pred cCCCCccceeeecCCCCcccchhhhcCC-CccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcC-CCCCCC
Q 044550 426 VGKLIHLKYLNLSELRIERIPETLCELY-NLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI-SRLTSL 503 (662)
Q Consensus 426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i-~~L~~L 503 (662)
+.++.+|++|++++|.++.+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|.. ..+|+.+ +.+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCC
Confidence 4567888888888888888865 55555 88888888887 6666 5688888888888888865 4555443 566666
Q ss_pred CccC
Q 044550 504 RTLE 507 (662)
Q Consensus 504 ~~L~ 507 (662)
+.|+
T Consensus 91 ~~L~ 94 (176)
T 1a9n_A 91 TELI 94 (176)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6664
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.79 E-value=5.9e-09 Score=118.07 Aligned_cols=116 Identities=25% Similarity=0.244 Sum_probs=86.0
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI 495 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~ 495 (662)
++.+...|..+..+.+|++|+|++|.+..+|..+.++.+|++|+|++|. +..+|..++.|++|++|++++|.+ ..+|.
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~ 287 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRL-TSLPA 287 (727)
T ss_dssp ------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCC-SSCCS
T ss_pred ccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcC-CccCh
Confidence 3455556788899999999999999999999999999999999999998 779999999999999999999986 58999
Q ss_pred cCCCCCCCCccCceeecCccCCCCccCccccccCcccCcccccc
Q 044550 496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEG 539 (662)
Q Consensus 496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~ 539 (662)
.++.|++|+.|++. .+.. ...+.. +..|.+|+.|.+++
T Consensus 288 ~~~~l~~L~~L~L~--~N~l-~~lp~~---~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 288 ELGSCFQLKYFYFF--DNMV-TTLPWE---FGNLCNLQFLGVEG 325 (727)
T ss_dssp SGGGGTTCSEEECC--SSCC-CCCCSS---TTSCTTCCCEECTT
T ss_pred hhcCCCCCCEEECC--CCCC-CccChh---hhcCCCccEEeCCC
Confidence 99999999999743 3333 233333 44455555555544
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.78 E-value=1.5e-09 Score=120.70 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=49.1
Q ss_pred HhhhcCcccccc---cccccc-----cCcccCCCCccceeeecCCC--Cc--ccchhhhcCCCccEEeccCCCCCccCCc
Q 044550 404 ELFSKLVFLRAL---RNWIRE-----IPENVGKLIHLKYLNLSELR--IE--RIPETLCELYNLQKLDIRGCQYLRGLPA 471 (662)
Q Consensus 404 ~~~~~l~~Lrvl---~~~~~~-----lp~~i~~l~~Lr~L~L~~~~--i~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~ 471 (662)
..+.+++.|+.| +|.+.. ++.....+++|++|++++|. +. .++.-+.++++|++|++++|..+..+|.
T Consensus 150 ~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~ 229 (594)
T 2p1m_B 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT 229 (594)
T ss_dssp HHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH
T ss_pred HHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH
Confidence 334456666665 333322 33333456778888888775 22 2333345567888888887754555666
Q ss_pred cccccccccEEecCCC
Q 044550 472 GIRKLMNMRSLLNDGT 487 (662)
Q Consensus 472 ~i~~L~~L~~L~l~~~ 487 (662)
.+..+++|++|+++.+
T Consensus 230 ~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 230 LLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHCTTCSEEECSBC
T ss_pred HHhcCCcceEcccccc
Confidence 6666677777765544
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=1.8e-08 Score=92.60 Aligned_cols=88 Identities=26% Similarity=0.408 Sum_probs=69.1
Q ss_pred cccccccCcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcccccc
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYM 493 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~ 493 (662)
++.+..+|..+. .+|++|+|++|.++.+ |..++++++|++|+|++|. +..+|.. +..+++|++|++++|.. ..+
T Consensus 21 ~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l-~~l 96 (174)
T 2r9u_A 21 NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHL-KSI 96 (174)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCC
T ss_pred CCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCcc-cee
Confidence 456777787764 7888888888888877 4578888888888888887 7777765 47888888888888865 566
Q ss_pred CCc-CCCCCCCCccC
Q 044550 494 PIG-ISRLTSLRTLE 507 (662)
Q Consensus 494 p~~-i~~L~~L~~L~ 507 (662)
|.. ++.+++|+.|+
T Consensus 97 ~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTTTTTCTTCSEEE
T ss_pred CHHHhccccCCCEEE
Confidence 654 78888888886
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.72 E-value=4.1e-08 Score=90.45 Aligned_cols=98 Identities=32% Similarity=0.460 Sum_probs=65.5
Q ss_pred cCcccccccccccccCcc-cCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccCCcc-ccccccccEEec
Q 044550 408 KLVFLRALRNWIREIPEN-VGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLN 484 (662)
Q Consensus 408 ~l~~Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l 484 (662)
+++.|.+-++.+..+|.. +..+++|++|++++|.++.+|+. ++++.+|++|++++|. +..+|.. +..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEEC
Confidence 334444445666666543 46777888888888877777654 5777888888888776 5566553 567778888888
Q ss_pred CCCccccccCCc-CCCCCCCCccC
Q 044550 485 DGTYLLKYMPIG-ISRLTSLRTLE 507 (662)
Q Consensus 485 ~~~~~~~~~p~~-i~~L~~L~~L~ 507 (662)
++|.. ..+|.. +..+++|+.|+
T Consensus 108 ~~N~l-~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 108 DTNQL-KSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CSSCC-SCCCTTTTTTCTTCCEEE
T ss_pred cCCcc-eEeCHHHhcCCcccCEEE
Confidence 77755 455544 46677777775
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.71 E-value=3.2e-08 Score=90.49 Aligned_cols=89 Identities=27% Similarity=0.399 Sum_probs=71.8
Q ss_pred cccccccCcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcccccc
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYM 493 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~ 493 (662)
++.+..+|..+. .+|++|+|++|.|+.+ |..+.++.+|++|++++|. +..+|.. +..+++|++|++++|.. ..+
T Consensus 18 ~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l-~~~ 93 (170)
T 3g39_A 18 GKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQL-KSI 93 (170)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCC
T ss_pred CCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCcc-CEe
Confidence 467778887764 7899999999999888 5568899999999999988 7777765 57899999999999875 556
Q ss_pred CC-cCCCCCCCCccCc
Q 044550 494 PI-GISRLTSLRTLEK 508 (662)
Q Consensus 494 p~-~i~~L~~L~~L~~ 508 (662)
|. .++.+++|+.|++
T Consensus 94 ~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWL 109 (170)
T ss_dssp CTTTTTTCTTCCEEEC
T ss_pred CHHHhcCCCCCCEEEe
Confidence 55 4888888988863
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.67 E-value=5e-08 Score=89.54 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=80.0
Q ss_pred EEEEecCCCCCcccccccccccccchHhhhcCccccccccccccc-CcccCCCCccceeeecCCCCcccchh-hhcCCCc
Q 044550 378 HLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREI-PENVGKLIHLKYLNLSELRIERIPET-LCELYNL 455 (662)
Q Consensus 378 ~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L 455 (662)
.+.+..+.+..+|..+ ..+++.|.+-+|.+..+ |..+.++++|++|+|++|.++.+|.. +.++.+|
T Consensus 16 ~l~~~~n~l~~iP~~~------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp EEECCSSCCSSCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEEeCCCCCCccCCCc------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence 4455555555555432 23444455446888887 56788999999999999999999886 5899999
Q ss_pred cEEeccCCCCCccCCcc-ccccccccEEecCCCccccccCC
Q 044550 456 QKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMPI 495 (662)
Q Consensus 456 ~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~ 495 (662)
++|++++|. +..+|.. +..+++|++|++++|.. ...|.
T Consensus 84 ~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~-~c~~~ 122 (174)
T 2r9u_A 84 TQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPW-DCECR 122 (174)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCB-CTTBG
T ss_pred hEEECCCCc-cceeCHHHhccccCCCEEEeCCCCc-ccccc
Confidence 999999998 7888875 88999999999999964 44443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.65 E-value=1.3e-10 Score=109.61 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=29.6
Q ss_pred ccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCC
Q 044550 425 NVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGT 487 (662)
Q Consensus 425 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~ 487 (662)
.++.+++|++|++++|.++.+| .++++++|++|++++|. +..+|..+..+++|++|++++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC
Confidence 4444445555555555444444 44445555555555444 4444444444445555555444
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.65 E-value=9.6e-08 Score=87.92 Aligned_cols=89 Identities=24% Similarity=0.394 Sum_probs=71.9
Q ss_pred cccccccCcccCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcccccc
Q 044550 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYM 493 (662)
Q Consensus 416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~ 493 (662)
++.+..+|..+. .+|++|++++|.++.+|.. ++++.+|++|++++|. +..+|.. +..+++|++|++++|.. ..+
T Consensus 16 ~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~ 91 (177)
T 2o6r_A 16 SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL-QSL 91 (177)
T ss_dssp SSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCC
T ss_pred CCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCc-ccc
Confidence 456777776554 7899999999999988764 6899999999999998 7777764 68999999999999976 455
Q ss_pred CC-cCCCCCCCCccCc
Q 044550 494 PI-GISRLTSLRTLEK 508 (662)
Q Consensus 494 p~-~i~~L~~L~~L~~ 508 (662)
|. .++.+++|++|++
T Consensus 92 ~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 92 PNGVFDKLTQLKELAL 107 (177)
T ss_dssp CTTTTTTCTTCCEEEC
T ss_pred CHHHhhCCcccCEEEC
Confidence 54 4688889988863
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.64 E-value=5.4e-10 Score=105.32 Aligned_cols=101 Identities=26% Similarity=0.287 Sum_probs=84.6
Q ss_pred hHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccc
Q 044550 403 SELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNM 479 (662)
Q Consensus 403 ~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L 479 (662)
+..+..++.|+.+ +|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+..+++|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCC
Confidence 3346677777776 57888888 8889999999999999999999999999999999999997 77787 68999999
Q ss_pred cEEecCCCccccccCC--cCCCCCCCCccC
Q 044550 480 RSLLNDGTYLLKYMPI--GISRLTSLRTLE 507 (662)
Q Consensus 480 ~~L~l~~~~~~~~~p~--~i~~L~~L~~L~ 507 (662)
++|++++|.. ..+|. .++.+++|+.|+
T Consensus 118 ~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 118 RVLYMSNNKI-TNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp SEEEESEEEC-CCHHHHHHHTTTTTCSEEE
T ss_pred CEEECCCCcC-CchhHHHHHhcCCCCCEEE
Confidence 9999999865 44443 678888888886
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.63 E-value=6.7e-08 Score=88.33 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=78.0
Q ss_pred EEEEecCCCCCcccccccccccccchHhhhcCccccccccccccc-CcccCCCCccceeeecCCCCcccchh-hhcCCCc
Q 044550 378 HLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREI-PENVGKLIHLKYLNLSELRIERIPET-LCELYNL 455 (662)
Q Consensus 378 ~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L 455 (662)
.+.+..+.+..+|..+ ..+++.|.+-+|.+..+ |..+..+.+|++|+|++|.++.+|+. +.++.+|
T Consensus 13 ~l~~s~n~l~~ip~~~------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp EEECTTSCCSSCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEEeCCCCcCccCccC------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence 4555555555555332 34445555557888888 66789999999999999999999876 5899999
Q ss_pred cEEeccCCCCCccCCc-cccccccccEEecCCCcc
Q 044550 456 QKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYL 489 (662)
Q Consensus 456 ~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~ 489 (662)
++|++++|. +..+|. .+..+++|++|++++|..
T Consensus 81 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 81 TQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 999999998 777876 488999999999999964
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.63 E-value=5.2e-09 Score=116.38 Aligned_cols=205 Identities=16% Similarity=0.085 Sum_probs=94.3
Q ss_pred CCCccceeeecCC-CCcc--cchhhhcCCCccEEeccCCCCCcc-----CCccccccccccEEecCCCcc-c--cccCCc
Q 044550 428 KLIHLKYLNLSEL-RIER--IPETLCELYNLQKLDIRGCQYLRG-----LPAGIRKLMNMRSLLNDGTYL-L--KYMPIG 496 (662)
Q Consensus 428 ~l~~Lr~L~L~~~-~i~~--lp~~i~~L~~L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~-~--~~~p~~ 496 (662)
.+++|++|+|++| .++. ++..+.++++|++|++++|. +.. ++.....+++|++|++++|.. . ..++.-
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 3667777777776 3443 44545567777777777766 322 222223556777777776640 0 011111
Q ss_pred CCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCC
Q 044550 497 ISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEG 576 (662)
Q Consensus 497 i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 576 (662)
+..+++|+.|++..+. .. ......+..+++|+.|.+..+...........+ ...+.++++|+.|.-.+...
T Consensus 207 ~~~~~~L~~L~L~~~~-~~----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~~--- 277 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAV-PL----EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDAV--- 277 (594)
T ss_dssp HHHCTTCCEEECCTTS-CH----HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTCC---
T ss_pred HHhCCCCcEEecCCCC-cH----HHHHHHHhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCcccccCCcccc---
Confidence 2334666666532110 00 001111223334444444333110000011111 12455666777663111100
Q ss_pred CCCchhHHHHhhhCCCCCCCcEEEEeecCCCC--CCcccccccCccEEEecCCCCCCCCCCCC-Ccc-cceeeccc
Q 044550 577 RRKNEKDKQLLEALQPPLNVEELEIESYRGNI--FPKWLTSLTNLRELKLSLCVNCEHLPPLG-KLP-LEKLQLKN 648 (662)
Q Consensus 577 ~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--lP~~i~~l~~L~~L~L~~~~~~~~lp~l~-~Lp-L~~l~l~~ 648 (662)
...+...+..+++|++|++++|.... ++..+..+++|++|++++|.....++.+. .+| |+.|++.+
T Consensus 278 ------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 278 ------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp ------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence 01111112235778888888776321 12234467888888888772111222222 356 77776643
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.39 E-value=4.9e-07 Score=93.05 Aligned_cols=87 Identities=16% Similarity=0.092 Sum_probs=61.1
Q ss_pred cccccCcccCCCCccceeeecC-CCCcccch-hhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccccC
Q 044550 418 WIREIPENVGKLIHLKYLNLSE-LRIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYMP 494 (662)
Q Consensus 418 ~~~~lp~~i~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p 494 (662)
.+..+|. +..+.+|++|+|++ |.++.+|+ .+++|.+|+.|+|++|. +..+| ..+.+|++|++|+|++|.+ ..+|
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNAL-ESLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCC-SCCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCcc-ceeC
Confidence 5667777 77788888888885 77887764 67788888888888877 55554 4567788888888888765 5566
Q ss_pred CcCCCCCCCCccC
Q 044550 495 IGISRLTSLRTLE 507 (662)
Q Consensus 495 ~~i~~L~~L~~L~ 507 (662)
..+.....|+.|+
T Consensus 97 ~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 97 WKTVQGLSLQELV 109 (347)
T ss_dssp STTTCSCCCCEEE
T ss_pred HHHcccCCceEEE
Confidence 5443333377765
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.12 E-value=3.7e-06 Score=86.39 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=67.6
Q ss_pred hhcCcccccc---c-ccccccC-cccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCccccccccc
Q 044550 406 FSKLVFLRAL---R-NWIREIP-ENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPAGIRKLMNM 479 (662)
Q Consensus 406 ~~~l~~Lrvl---~-~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L 479 (662)
+..+..|+.| + |.+..+| ..|+.|.+|++|+|++|.++.+|+ .|++|.+|+.|+|++|. +..+|..+....+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCc
Confidence 4444445554 4 7888887 568999999999999999998865 67999999999999998 88888776555559
Q ss_pred cEEecCCCcc
Q 044550 480 RSLLNDGTYL 489 (662)
Q Consensus 480 ~~L~l~~~~~ 489 (662)
+.|++.+|..
T Consensus 106 ~~l~l~~N~~ 115 (347)
T 2ifg_A 106 QELVLSGNPL 115 (347)
T ss_dssp CEEECCSSCC
T ss_pred eEEEeeCCCc
Confidence 9999998864
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=2.8e-06 Score=86.66 Aligned_cols=53 Identities=8% Similarity=0.111 Sum_probs=32.8
Q ss_pred CCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCCcCCCCCCCCcc
Q 044550 452 LYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506 (662)
Q Consensus 452 L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 506 (662)
+.+|+.|++.+ . ++.++. .+..+++|+.|+++++.....-+..|....++..+
T Consensus 100 ~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 100 KQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFI 153 (329)
T ss_dssp CTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEE
T ss_pred cCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEe
Confidence 78888888877 4 666654 46777888888887775533333445554444444
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=2e-06 Score=88.35 Aligned_cols=61 Identities=25% Similarity=0.190 Sum_probs=32.4
Q ss_pred cchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcC--CCCCCCCccCc
Q 044550 445 IPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI--SRLTSLRTLEK 508 (662)
Q Consensus 445 lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i--~~L~~L~~L~~ 508 (662)
++..+..+++|+.|+|++|..+ .+|. + .+++|++|.+..|.........+ ..+++|+.|++
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 4455566677777777766422 3443 3 36677777776654311111112 24566666654
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.89 E-value=1.1e-06 Score=91.09 Aligned_cols=60 Identities=23% Similarity=0.337 Sum_probs=37.3
Q ss_pred CCccceeeecCCCCcccc-hhhhc-----CCCccEEeccCCCCCcc--CCccccccccccEEecCCCcc
Q 044550 429 LIHLKYLNLSELRIERIP-ETLCE-----LYNLQKLDIRGCQYLRG--LPAGIRKLMNMRSLLNDGTYL 489 (662)
Q Consensus 429 l~~Lr~L~L~~~~i~~lp-~~i~~-----L~~L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~ 489 (662)
+.+|++|+|++|.++... ..+.. ..+|+.|++++|. +.. ++.-...+++|++|++++|..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 456888888888876421 22222 2688888888887 422 111123466788888888854
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=0.00013 Score=74.21 Aligned_cols=168 Identities=14% Similarity=0.033 Sum_probs=94.6
Q ss_pred Ccccccc--cccccccCc-ccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCC-----------------CCCc
Q 044550 409 LVFLRAL--RNWIREIPE-NVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGC-----------------QYLR 467 (662)
Q Consensus 409 l~~Lrvl--~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~-----------------~~l~ 467 (662)
+..|+.+ ...++.+++ .|.++.+|+.|+++.|.+..+++ .+.++.++..+.+... ..+.
T Consensus 100 ~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 100 KQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp CTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred cCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 7777776 236777754 47788999999999988776654 4556666666554431 1111
Q ss_pred ---------cCCccc----------------------------cccccccEEecCCCccccccCC-cCCCCCCCCccCce
Q 044550 468 ---------GLPAGI----------------------------RKLMNMRSLLNDGTYLLKYMPI-GISRLTSLRTLEKF 509 (662)
Q Consensus 468 ---------~lP~~i----------------------------~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~ 509 (662)
.+|..+ ..+++|+.|++++|.. ..+|. .|..+++|+.|.+.
T Consensus 180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i-~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA-TTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC-CEECTTTTTTCTTCCEEECC
T ss_pred eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc-ceecHhhhhCCCCCCEEECC
Confidence 001000 0267899999988764 56664 47888888888532
Q ss_pred eecCccCCCCccCccccccCc-ccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhh
Q 044550 510 VVGGGVDGGGTCRLESLKNLQ-LLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLE 588 (662)
Q Consensus 510 ~~~~~~~~~~~~~l~~L~~L~-~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 588 (662)
.+ ........+..+.+|+ .+ .+.. +........+.+|.+|+.|.+..+.... -...
T Consensus 259 --~n-i~~I~~~aF~~~~~L~~~l---~l~~--------~l~~I~~~aF~~c~~L~~l~l~~n~i~~---------I~~~ 315 (329)
T 3sb4_A 259 --HN-LKTIGQRVFSNCGRLAGTL---ELPA--------SVTAIEFGAFMGCDNLRYVLATGDKITT---------LGDE 315 (329)
T ss_dssp --TT-CCEECTTTTTTCTTCCEEE---EECT--------TCCEECTTTTTTCTTEEEEEECSSCCCE---------ECTT
T ss_pred --cc-cceehHHHhhCChhccEEE---EEcc--------cceEEchhhhhCCccCCEEEeCCCccCc---------cchh
Confidence 21 2222233455555444 33 2221 1122333456788888888875443200 0012
Q ss_pred hCCCCCCCcEEE
Q 044550 589 ALQPPLNVEELE 600 (662)
Q Consensus 589 ~l~~~~~L~~L~ 600 (662)
.+..+++|+.++
T Consensus 316 aF~~~~~L~~ly 327 (329)
T 3sb4_A 316 LFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTCCCCEEE
T ss_pred hhcCCcchhhhc
Confidence 455667888775
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.64 E-value=0.00029 Score=73.55 Aligned_cols=178 Identities=13% Similarity=0.093 Sum_probs=78.6
Q ss_pred cCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCCc-CCCCCCC
Q 044550 426 VGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPIG-ISRLTSL 503 (662)
Q Consensus 426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L 503 (662)
|.++.+|+.++++.|.++.+|...-...+|+.+.+..+ +..++. .+..+++|+.+.+..+ +..++.. |.. ++|
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGI 250 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCC
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCc
Confidence 44455555555555555555554333455555555432 333332 3445555555555543 2333322 222 444
Q ss_pred CccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhH
Q 044550 504 RTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKD 583 (662)
Q Consensus 504 ~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 583 (662)
+.+.+ .+.........+..+.+|+.+ .+.+-. .............+.+|.+|+.+.+..+ . . .
T Consensus 251 ~~i~l---p~~i~~I~~~aF~~c~~L~~l---~l~~~~--~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i-~----~--- 313 (401)
T 4fdw_A 251 TTVKL---PNGVTNIASRAFYYCPELAEV---TTYGST--FNDDPEAMIHPYCLEGCPKLARFEIPES-I-R----I--- 313 (401)
T ss_dssp SEEEE---ETTCCEECTTTTTTCTTCCEE---EEESSC--CCCCTTCEECTTTTTTCTTCCEECCCTT-C-C----E---
T ss_pred cEEEe---CCCccEEChhHhhCCCCCCEE---EeCCcc--ccCCcccEECHHHhhCCccCCeEEeCCc-e-E----E---
Confidence 44432 111111112223333333322 221100 0000011123334556667776665411 0 0 0
Q ss_pred HHHhhhCCCCCCCcEEEEeecCCCCCC-cccccccCccEEEecCCC
Q 044550 584 KQLLEALQPPLNVEELEIESYRGNIFP-KWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 584 ~~~l~~l~~~~~L~~L~l~~~~~~~lP-~~i~~l~~L~~L~L~~~~ 628 (662)
-....+..+.+|+.+.|..+ ...++ ..+..+ +|+.|++.+|.
T Consensus 314 -I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 314 -LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred -EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 00123455677888888544 23333 344466 88888888875
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.57 E-value=7.3e-05 Score=72.74 Aligned_cols=80 Identities=25% Similarity=0.307 Sum_probs=61.4
Q ss_pred CCCCccceeeecCCCCccc---chhhhcCCCccEEeccCCCCCccCCccccccc--cccEEecCCCccccccCC------
Q 044550 427 GKLIHLKYLNLSELRIERI---PETLCELYNLQKLDIRGCQYLRGLPAGIRKLM--NMRSLLNDGTYLLKYMPI------ 495 (662)
Q Consensus 427 ~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~--~L~~L~l~~~~~~~~~p~------ 495 (662)
.++++|++|+|++|.++.+ |..+.++++|+.|+|++|. +..+ ..+..+. +|+.|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3578999999999998865 4677899999999999988 6666 3456666 899999999987555552
Q ss_pred -cCCCCCCCCccCc
Q 044550 496 -GISRLTSLRTLEK 508 (662)
Q Consensus 496 -~i~~L~~L~~L~~ 508 (662)
.+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2566777777764
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.43 E-value=0.00013 Score=74.76 Aligned_cols=170 Identities=14% Similarity=0.098 Sum_probs=91.8
Q ss_pred cchhhhcCCCccEEeccCCCC---------CccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCcc
Q 044550 445 IPETLCELYNLQKLDIRGCQY---------LRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGV 515 (662)
Q Consensus 445 lp~~i~~L~~L~~L~l~~~~~---------l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~ 515 (662)
+++++.++++|+.|.+.+... ...++..+..+++|+.|.+++|.. ..+|. + .+++|++|++. .+..
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~--~~~l 205 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEII--SGGL 205 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEE--CSBC
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEe--cCCC
Confidence 344556667777777654321 123445566789999999988743 24444 3 37889998743 2222
Q ss_pred CCCCccCccccc--cCcccCccccccCCC-CCCCCChhhhhhc-cccccccCCcEEEEecCCCCCCCCchhHHHHhhhCC
Q 044550 516 DGGGTCRLESLK--NLQLLRKCSIEGLKG-LSNVSHVDEVERL-QLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQ 591 (662)
Q Consensus 516 ~~~~~~~l~~L~--~L~~L~~L~i~~~~~-~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 591 (662)
. ...+..+. .+++|+.|.++.... ...-.....+... ....+++|+.|.+..+.. . ......+....
T Consensus 206 ~---~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i-----~-~~~~~~la~a~ 276 (362)
T 2ra8_A 206 P---DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE-----Q-NVVVEMFLESD 276 (362)
T ss_dssp C---HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT-----H-HHHHHHHHHCS
T ss_pred C---hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC-----c-hHHHHHHHhCc
Confidence 1 22222222 344555554431100 0001111111111 113478999999987653 0 01112222223
Q ss_pred CCCCCcEEEEeecCCCC-----CCcccccccCccEEEecCCC
Q 044550 592 PPLNVEELEIESYRGNI-----FPKWLTSLTNLRELKLSLCV 628 (662)
Q Consensus 592 ~~~~L~~L~l~~~~~~~-----lP~~i~~l~~L~~L~L~~~~ 628 (662)
.+++|++|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 46889999998876433 34445578899999999886
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.29 E-value=0.00017 Score=64.97 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=40.9
Q ss_pred CCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccC-Ccccccc----ccccEEecCCCcc
Q 044550 429 LIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGL-PAGIRKL----MNMRSLLNDGTYL 489 (662)
Q Consensus 429 l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L----~~L~~L~l~~~~~ 489 (662)
-.+|++|++++|.|+.. -..+.++++|+.|+|++|..++.- -..+..+ ++|++|++++|..
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 35788999999887632 245678888999999888755431 0123333 3688888888853
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.28 E-value=0.00078 Score=70.24 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=98.2
Q ss_pred cccccCcc-cCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC-
Q 044550 418 WIREIPEN-VGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP- 494 (662)
Q Consensus 418 ~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p- 494 (662)
.++.++.. |.+ .+|+.+.+.. .++.++ ..+.++.+|+.+++.++. +..+|.......+|+.+.+..+ +..++
T Consensus 145 ~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~ 219 (401)
T 4fdw_A 145 GLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGS 219 (401)
T ss_dssp TCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECT
T ss_pred CccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehh
Confidence 45555433 333 4677777775 566664 367778888888887766 7777766555677888887754 34444
Q ss_pred CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCC
Q 044550 495 IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDI 574 (662)
Q Consensus 495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 574 (662)
..|..+++|+.+.+- ..........+.. . .|+.+.+.. +...+....+.+|.+|+.+.+..+...
T Consensus 220 ~aF~~~~~L~~l~l~---~~l~~I~~~aF~~-~---~L~~i~lp~--------~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIP---ENVSTIGQEAFRE-S---GITTVKLPN--------GVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp TTTTTCTTCCCEECC---TTCCEECTTTTTT-C---CCSEEEEET--------TCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred hHhhCCCCCCEEecC---CCccCcccccccc-C---CccEEEeCC--------CccEEChhHhhCCCCCCEEEeCCcccc
Confidence 346677777776421 1111111112222 2 233322211 112223344667778888777643220
Q ss_pred CCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCC
Q 044550 575 EGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLC 627 (662)
Q Consensus 575 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~ 627 (662)
..... .-....+..+++|+.+.+..+ ...++. .+..+++|+.|.|..+
T Consensus 285 ~~~~~----~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 285 DDPEA----MIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CCTTC----EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT
T ss_pred CCccc----EECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc
Confidence 00000 000123455677777777643 333433 3446778888887554
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.24 E-value=1.7e-05 Score=81.98 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=46.6
Q ss_pred CCccceeeecCCCCcc--cchhhhcCCCccEEeccCCCCCccCC-ccc-----cccccccEEecCCCcccc----ccCCc
Q 044550 429 LIHLKYLNLSELRIER--IPETLCELYNLQKLDIRGCQYLRGLP-AGI-----RKLMNMRSLLNDGTYLLK----YMPIG 496 (662)
Q Consensus 429 l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lP-~~i-----~~L~~L~~L~l~~~~~~~----~~p~~ 496 (662)
..+|++|+|++|.+.. +..-...+.+|+.|++++|. +.... ..+ ...++|++|++++|.... .++..
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 3689999999998763 22223346688999999887 43221 122 235678888888885421 12233
Q ss_pred CCCCCCCCccC
Q 044550 497 ISRLTSLRTLE 507 (662)
Q Consensus 497 i~~L~~L~~L~ 507 (662)
+..+++|++|+
T Consensus 179 L~~~~~L~~L~ 189 (372)
T 3un9_A 179 LAGNTSVTHLS 189 (372)
T ss_dssp HHTCSSCCEEE
T ss_pred HhcCCCcCEEe
Confidence 34445555554
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.63 E-value=0.0008 Score=60.61 Aligned_cols=83 Identities=19% Similarity=0.106 Sum_probs=47.7
Q ss_pred cCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCC----CCCCcEEEEeecCCC
Q 044550 532 LRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQP----PLNVEELEIESYRGN 607 (662)
Q Consensus 532 L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~----~~~L~~L~l~~~~~~ 607 (662)
|..|+++++ . ..+.....+..+++|+.|+++.|..+ ....+..+.. .++|++|+|++|...
T Consensus 63 L~~LDLs~~---~----Itd~GL~~L~~~~~L~~L~L~~C~~I--------tD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 63 IQAIDATDS---C----IMSIGFDHMEGLQYVEKIRLCKCHYI--------EDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp EEEEEEESC---C----CCGGGGGGGTTCSCCCEEEEESCTTC--------CHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred EeEEeCcCC---C----ccHHHHHHhcCCCCCCEEEeCCCCcc--------CHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 555666665 1 22223334567788888888877532 1223333333 246888888887532
Q ss_pred CCCc---ccccccCccEEEecCCCCC
Q 044550 608 IFPK---WLTSLTNLRELKLSLCVNC 630 (662)
Q Consensus 608 ~lP~---~i~~l~~L~~L~L~~~~~~ 630 (662)
+ .. .+..+++|++|+|++|...
T Consensus 128 T-D~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 128 T-DKGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp C-HHHHHHGGGCTTCCEEEEESCTTC
T ss_pred C-HHHHHHHhcCCCCCEEECCCCCCC
Confidence 2 11 2346778888888888643
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.40 E-value=0.0018 Score=62.92 Aligned_cols=76 Identities=21% Similarity=0.190 Sum_probs=55.6
Q ss_pred cCcccccc---ccccccc---CcccCCCCccceeeecCCCCcccchhhhcCC--CccEEeccCCCCCccCCc-------c
Q 044550 408 KLVFLRAL---RNWIREI---PENVGKLIHLKYLNLSELRIERIPETLCELY--NLQKLDIRGCQYLRGLPA-------G 472 (662)
Q Consensus 408 ~l~~Lrvl---~~~~~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lP~-------~ 472 (662)
++..|+.| +|.+..+ |..+..+++|++|+|++|.|+.+ ..+..+. +|+.|++++|.....+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 33444444 5666554 45566899999999999999987 4466666 999999999995455652 3
Q ss_pred ccccccccEEec
Q 044550 473 IRKLMNMRSLLN 484 (662)
Q Consensus 473 i~~L~~L~~L~l 484 (662)
+..+++|+.|+-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678899999874
No 158
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.31 E-value=0.026 Score=53.56 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=52.5
Q ss_pred CCCCceEEEEcccHHHH-hh-hCCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHH
Q 044550 191 GLHGSKIFVTTRNESVA-RM-MGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIG 268 (662)
Q Consensus 191 ~~~gSrIivTTR~~~v~-~~-~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig 268 (662)
...+.+||+||+..... .. ......+++.+++.++.++++.+.+..... .. -.+..+.|++.|+|.|..+..+.
T Consensus 153 ~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~~~~~~~~ 228 (250)
T 1njg_A 153 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLT 228 (250)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CB---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 34567888888765322 11 122358999999999999999987754321 11 13567889999999999887765
Q ss_pred Hh
Q 044550 269 NL 270 (662)
Q Consensus 269 ~~ 270 (662)
..
T Consensus 229 ~~ 230 (250)
T 1njg_A 229 DQ 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.27 E-value=0.00067 Score=62.37 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=45.0
Q ss_pred ccCCCCccceeeecCC-CCc-----ccchhhhcCCCccEEeccCCCCCcc-----CCccccccccccEEecCCCcc
Q 044550 425 NVGKLIHLKYLNLSEL-RIE-----RIPETLCELYNLQKLDIRGCQYLRG-----LPAGIRKLMNMRSLLNDGTYL 489 (662)
Q Consensus 425 ~i~~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~ 489 (662)
.+...+.|++|+|++| .+. .+...+...++|++|+|++|. +.. +...+...++|++|++++|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 3455778888888888 765 355667777888888888887 432 334455567888888888854
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.25 E-value=0.0011 Score=60.91 Aligned_cols=83 Identities=16% Similarity=0.108 Sum_probs=58.7
Q ss_pred hhcCcccccc---cc-ccc-----ccCcccCCCCccceeeecCCCCc-----ccchhhhcCCCccEEeccCCCCCcc---
Q 044550 406 FSKLVFLRAL---RN-WIR-----EIPENVGKLIHLKYLNLSELRIE-----RIPETLCELYNLQKLDIRGCQYLRG--- 468 (662)
Q Consensus 406 ~~~l~~Lrvl---~~-~~~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~--- 468 (662)
+...+.|+.+ +| .+. .+...+....+|++|+|++|.|. .+...+...++|++|+|++|. +..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence 4444555555 34 443 24455667789999999999876 355667778899999999987 543
Q ss_pred --CCccccccccccEEec--CCCcc
Q 044550 469 --LPAGIRKLMNMRSLLN--DGTYL 489 (662)
Q Consensus 469 --lP~~i~~L~~L~~L~l--~~~~~ 489 (662)
+...+...++|++|++ ++|..
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCC
Confidence 4556677788999999 66754
No 161
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.59 E-value=0.19 Score=46.71 Aligned_cols=115 Identities=10% Similarity=-0.021 Sum_probs=76.6
Q ss_pred CceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc-----------------------------------------
Q 044550 143 GEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI----------------------------------------- 181 (662)
Q Consensus 143 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi----------------------------------------- 181 (662)
.+++|+++.++.+.+++..... ..+-|+|..|+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNI------PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCC------CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCC------CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 4689999999999999975432 23789999998
Q ss_pred ------------------ccch-----------hhhhcCCCCceEEEEcccHHHH-hh-hCCCCeeeCCCCChHHHHHHH
Q 044550 182 ------------------EPFF-----------LRLKNGLHGSKIFVTTRNESVA-RM-MGSTNIISIKQLAEEECWSLF 230 (662)
Q Consensus 182 ------------------~~F~-----------~~l~~~~~gSrIivTTR~~~v~-~~-~~~~~~~~l~~L~~~~s~~Lf 230 (662)
++++ ..+.....+.++|+||+...-. .. ......+.+.+++.++..+++
T Consensus 91 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l 170 (226)
T 2chg_A 91 EFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRL 170 (226)
T ss_dssp HHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred HHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHH
Confidence 0000 2233334567888888765321 11 111238999999999999999
Q ss_pred HHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHH
Q 044550 231 KQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVI 267 (662)
Q Consensus 231 ~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~i 267 (662)
.+.+...+. .. -.+..+.+++.++|.|..+..+
T Consensus 171 ~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 171 LEICEKEGV-KI---TEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHHHHHHTC-CB---CHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 887643221 11 1356678889999999865544
No 162
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.17 E-value=0.084 Score=52.84 Aligned_cols=53 Identities=17% Similarity=0.007 Sum_probs=39.0
Q ss_pred CeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHh
Q 044550 214 NIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNL 270 (662)
Q Consensus 214 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~ 270 (662)
.++.+.+++.++..+++.+.+..... .. -.+....++++|.|.|-.+..+...
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGV-RI---TEEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHccCCHHHHHHHHHH
Confidence 58999999999999988887653221 11 1356788999999999887665543
No 163
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.07 E-value=0.27 Score=50.90 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=44.3
Q ss_pred EEEEcccHHHHhhhC--------C-CCeeeCCCCChHHHHHHHHHHh---hcCCCCCCccchHHHHHHHHHHhc------
Q 044550 197 IFVTTRNESVARMMG--------S-TNIISIKQLAEEECWSLFKQLA---FFGRSFEDREKLEPMGRKIARKCK------ 258 (662)
Q Consensus 197 IivTTR~~~v~~~~~--------~-~~~~~l~~L~~~~s~~Lf~~~a---f~~~~~~~~~~~~~~~~~iv~~c~------ 258 (662)
||+||+..++...+. . ...+.+.+|+.++++++|...+ |.... --.+....|++.|+
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV-----WEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS-----CCHHHHHHHHHHHCGGGTSC
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC-----CChHHHHHHHHHHHHhccCC
Confidence 788887665432221 1 2239999999999999997653 32111 11456788999999
Q ss_pred CCchhHHHHH
Q 044550 259 GLPLAAKVIG 268 (662)
Q Consensus 259 GlPLai~~ig 268 (662)
|.|..+..+.
T Consensus 257 G~p~~~~~l~ 266 (412)
T 1w5s_A 257 GSARRAIVAL 266 (412)
T ss_dssp CCHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 9997655443
No 164
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.79 E-value=0.49 Score=47.52 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=52.2
Q ss_pred CCceEEEEcccHHHHhhh-----------CC-CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCC
Q 044550 193 HGSKIFVTTRNESVARMM-----------GS-TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGL 260 (662)
Q Consensus 193 ~gSrIivTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~Gl 260 (662)
.+.++|+|++...+...+ +. ...+.+.+|+.+|+.+++.... ....... -.+....|+..|+|.
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~~---~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLDV---PENEIEEAVELLDGI 238 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCCC---CHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH-HHcCCCC---CHHHHHHHHHHhCCC
Confidence 467889998876542211 11 2479999999999999987643 2221111 135678999999999
Q ss_pred chhHHHHHHhh
Q 044550 261 PLAAKVIGNLL 271 (662)
Q Consensus 261 PLai~~ig~~L 271 (662)
|+++..++..+
T Consensus 239 P~~l~~~~~~~ 249 (350)
T 2qen_A 239 PGWLVVFGVEY 249 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.29 E-value=0.11 Score=44.06 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=16.0
Q ss_pred ccceeeecCCCCcccchh-hhcCCCccEEeccCCC
Q 044550 431 HLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQ 464 (662)
Q Consensus 431 ~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 464 (662)
+|++|+|++|.|+.+|.. +..+.+|++|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 345555555555554432 3444444444444443
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.97 E-value=0.11 Score=44.23 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=44.1
Q ss_pred ceeeecCCCCc--ccchhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcc
Q 044550 433 KYLNLSELRIE--RIPETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYL 489 (662)
Q Consensus 433 r~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~ 489 (662)
..++-+++.++ .+|..+. .+|++|+|++|. +..+|.+ +..+++|+.|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 36788888888 8887543 479999999998 8888775 57899999999999853
No 167
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.29 E-value=0.27 Score=49.57 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=52.4
Q ss_pred CCceEEEEcccHHHHhhh-----------CC-CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCC
Q 044550 193 HGSKIFVTTRNESVARMM-----------GS-TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGL 260 (662)
Q Consensus 193 ~gSrIivTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~Gl 260 (662)
.+.++|+|++.......+ +. ...+.+.+|+.+++.+++...+-.... ..... ..|+..|+|.
T Consensus 169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~----~~i~~~t~G~ 242 (357)
T 2fna_A 169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKDY----EVVYEKIGGI 242 (357)
T ss_dssp TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCCH----HHHHHHHCSC
T ss_pred CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCcH----HHHHHHhCCC
Confidence 467899999976543211 11 257899999999999999874321111 11222 7899999999
Q ss_pred chhHHHHHHhhcC
Q 044550 261 PLAAKVIGNLLRS 273 (662)
Q Consensus 261 PLai~~ig~~L~~ 273 (662)
|+++..++..+..
T Consensus 243 P~~l~~~~~~~~~ 255 (357)
T 2fna_A 243 PGWLTYFGFIYLD 255 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999877643
No 168
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.43 E-value=2.6 Score=41.48 Aligned_cols=74 Identities=8% Similarity=0.083 Sum_probs=47.1
Q ss_pred CCceEEEEcccHH-HHhhh-CCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchh-HHHHHH
Q 044550 193 HGSKIFVTTRNES-VARMM-GSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLA-AKVIGN 269 (662)
Q Consensus 193 ~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLa-i~~ig~ 269 (662)
.++++|+||.... +...+ .....+++.+++.++..+++...+...+. .. -.+....+++.|+|.|.. +..+..
T Consensus 136 ~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV-KY---TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4567777776532 21111 12348999999999999999887643221 11 135568899999999954 444443
Q ss_pred h
Q 044550 270 L 270 (662)
Q Consensus 270 ~ 270 (662)
.
T Consensus 212 ~ 212 (323)
T 1sxj_B 212 T 212 (323)
T ss_dssp H
T ss_pred H
Confidence 3
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.22 E-value=1.2 Score=45.75 Aligned_cols=37 Identities=8% Similarity=0.175 Sum_probs=19.4
Q ss_pred CCCCCCCcEEEEeecCCCCCC-cccccccCccEEEecCC
Q 044550 590 LQPPLNVEELEIESYRGNIFP-KWLTSLTNLRELKLSLC 627 (662)
Q Consensus 590 l~~~~~L~~L~l~~~~~~~lP-~~i~~l~~L~~L~L~~~ 627 (662)
+..+.+|+++.|... ...++ ..+..+++|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 344566666666432 22232 23345677777777544
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.10 E-value=1.9 Score=44.20 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=19.4
Q ss_pred CCCCCCCcEEEEeecCCCCCC-cccccccCccEEEecCC
Q 044550 590 LQPPLNVEELEIESYRGNIFP-KWLTSLTNLRELKLSLC 627 (662)
Q Consensus 590 l~~~~~L~~L~l~~~~~~~lP-~~i~~l~~L~~L~L~~~ 627 (662)
+..+.+|+++.+..+ ...++ ..+..+++|+.++|..+
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 344556666665433 22222 23446677777777544
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.41 E-value=3.2 Score=41.97 Aligned_cols=70 Identities=11% Similarity=0.004 Sum_probs=43.4
Q ss_pred CceEEEEcccHHHHhhhCC-------CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc---CCchh
Q 044550 194 GSKIFVTTRNESVARMMGS-------TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCK---GLPLA 263 (662)
Q Consensus 194 gSrIivTTR~~~v~~~~~~-------~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~---GlPLa 263 (662)
+..||+||+.......+.. ...+.+.+++.++.++++.+.+-.... ...--.+..+.+++.++ |.|..
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~ 240 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARR 240 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHH
T ss_pred eEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHH
Confidence 4567888876654333221 147999999999999999886431110 01112455677777777 99884
Q ss_pred HH
Q 044550 264 AK 265 (662)
Q Consensus 264 i~ 265 (662)
+.
T Consensus 241 ~~ 242 (386)
T 2qby_A 241 AL 242 (386)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 172
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.61 E-value=5.8 Score=40.08 Aligned_cols=88 Identities=7% Similarity=-0.103 Sum_probs=50.5
Q ss_pred CCceEEEEcccHHH--------HhhhCCCCeeeCCCCChHHHHHHHHHHhh---cCCCCCCccchHHHHHHHHHHhc---
Q 044550 193 HGSKIFVTTRNESV--------ARMMGSTNIISIKQLAEEECWSLFKQLAF---FGRSFEDREKLEPMGRKIARKCK--- 258 (662)
Q Consensus 193 ~gSrIivTTR~~~v--------~~~~~~~~~~~l~~L~~~~s~~Lf~~~af---~~~~~~~~~~~~~~~~~iv~~c~--- 258 (662)
.+..+|.||+.... ...++ ...+.+.+++.++..+++...+- .... ..+ +..+.++++++
T Consensus 166 ~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 166 VWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGV--LDP---DVVPLCAALAAREH 239 (387)
T ss_dssp --CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTT--BCS---SHHHHHHHHHHSSS
T ss_pred ceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCC--CCH---HHHHHHHHHHHHhc
Confidence 34567778776532 22221 14799999999999999988753 2221 122 34567788887
Q ss_pred CCch-hHHHHHHhhc-----CC--CCHHHHHHHHhh
Q 044550 259 GLPL-AAKVIGNLLR-----SK--STVKEWQRILES 286 (662)
Q Consensus 259 GlPL-ai~~ig~~L~-----~~--~~~~~w~~~l~~ 286 (662)
|.|- |+..+..+.. +. -+.+.++.++..
T Consensus 240 G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 240 GDARRALDLLRVAGEIAERRREERVRREHVYSARAE 275 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 9993 3333333221 21 256666666543
No 173
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=85.55 E-value=6 Score=38.87 Aligned_cols=75 Identities=15% Similarity=0.030 Sum_probs=48.3
Q ss_pred CCCceEEEEcccHHH-Hhhh-CCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHH
Q 044550 192 LHGSKIFVTTRNESV-ARMM-GSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGN 269 (662)
Q Consensus 192 ~~gSrIivTTR~~~v-~~~~-~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~ 269 (662)
..+.++|+||....- ...+ .....+.+.+++.++..+++...+...+. . --.+..+.+++.++|-|-.+..+-.
T Consensus 138 ~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 138 SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-E---LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp TTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-E---ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 456788888765421 1111 11237899999999999999887653221 1 1135667889999999986655443
Q ss_pred h
Q 044550 270 L 270 (662)
Q Consensus 270 ~ 270 (662)
.
T Consensus 214 ~ 214 (327)
T 1iqp_A 214 A 214 (327)
T ss_dssp H
T ss_pred H
Confidence 3
No 174
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.66 E-value=5 Score=40.93 Aligned_cols=35 Identities=6% Similarity=0.072 Sum_probs=17.4
Q ss_pred CCCCCCcEEEEeecCCCCCC-cccccccCccEEEecC
Q 044550 591 QPPLNVEELEIESYRGNIFP-KWLTSLTNLRELKLSL 626 (662)
Q Consensus 591 ~~~~~L~~L~l~~~~~~~lP-~~i~~l~~L~~L~L~~ 626 (662)
..+.+|+++.|..+ ...++ ..+..+.+|+.+.|..
T Consensus 308 ~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 308 AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence 34456666666432 12222 2333566677766653
No 175
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=77.83 E-value=11 Score=38.07 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=44.8
Q ss_pred CceEEEEcccHHHHhhhCC-------CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHh---------
Q 044550 194 GSKIFVTTRNESVARMMGS-------TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKC--------- 257 (662)
Q Consensus 194 gSrIivTTR~~~v~~~~~~-------~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c--------- 257 (662)
+..||+||+...+...+.. ...+.+.+++.++..+++...+-..... ..--.+..+.+++.+
T Consensus 159 ~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~ 236 (389)
T 1fnn_A 159 RIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTN 236 (389)
T ss_dssp CEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTT
T ss_pred CEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCC
Confidence 5678888877654433221 1379999999999999998875321000 011145678889999
Q ss_pred cCCchhHHH
Q 044550 258 KGLPLAAKV 266 (662)
Q Consensus 258 ~GlPLai~~ 266 (662)
.|.|-.+..
T Consensus 237 ~G~~r~~~~ 245 (389)
T 1fnn_A 237 RGDARLAID 245 (389)
T ss_dssp SCCHHHHHH
T ss_pred CCcHHHHHH
Confidence 788754433
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=74.46 E-value=16 Score=36.50 Aligned_cols=73 Identities=12% Similarity=0.066 Sum_probs=45.8
Q ss_pred CCCceEEEEcccHH-HHhhh-CCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHH
Q 044550 192 LHGSKIFVTTRNES-VARMM-GSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIG 268 (662)
Q Consensus 192 ~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig 268 (662)
..+..+|++|.... +...+ .....+++.+++.++..+++.+.+-..+. .. -.+....+++.++|.|..+..+.
T Consensus 147 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 147 PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 34556666665432 22211 12358999999999999988776532111 11 13556789999999998776543
No 177
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=71.84 E-value=11 Score=37.86 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=26.3
Q ss_pred CCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCC
Q 044550 427 GKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGT 487 (662)
Q Consensus 427 ~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~ 487 (662)
..+..|+.+.+..+ ++.++. .+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+.++
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~ 296 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS 296 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccccccccccc
Confidence 34455555555443 333322 3444555555555432 333332 3344555555555443
No 178
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=71.49 E-value=12 Score=37.81 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=65.1
Q ss_pred hhcCcccccc--cccccccC-cccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-ccccccccc
Q 044550 406 FSKLVFLRAL--RNWIREIP-ENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMR 480 (662)
Q Consensus 406 ~~~l~~Lrvl--~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~ 480 (662)
|..+..|..+ ...++.+. ..+.++..|+.+.+..+ ++.++. .+.++.+|+.+.+.++. ++.++. .+.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccccccccccc-cceehhhhhcCCCCCC
Confidence 4444444443 12344442 34556788888888654 666655 57888999999998766 666654 577889999
Q ss_pred EEecCCCccccccC-CcCCCCCCCCccC
Q 044550 481 SLLNDGTYLLKYMP-IGISRLTSLRTLE 507 (662)
Q Consensus 481 ~L~l~~~~~~~~~p-~~i~~L~~L~~L~ 507 (662)
.+.+..+ ++.++ ..|.++++|+.+.
T Consensus 314 ~i~lp~~--l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 314 SVTLPTA--LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCCCC
T ss_pred EEEcCcc--ccEEHHHHhhCCCCCCEEE
Confidence 9998754 34554 3467777777775
No 179
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=69.23 E-value=16 Score=37.01 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=8.8
Q ss_pred cccccccCCcEEEE
Q 044550 556 QLYNKKNLLRLGLQ 569 (662)
Q Consensus 556 ~l~~~~~L~~L~l~ 569 (662)
.+.+|.+|+.+.+.
T Consensus 352 aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 352 AFSNCTALNNIEYS 365 (394)
T ss_dssp GGTTCTTCCEEEES
T ss_pred HhhCCCCCCEEEEC
Confidence 45566777776664
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=65.59 E-value=41 Score=32.47 Aligned_cols=71 Identities=8% Similarity=-0.021 Sum_probs=44.8
Q ss_pred CCceEEEEcccHH-HHhhh-CCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHH
Q 044550 193 HGSKIFVTTRNES-VARMM-GSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVI 267 (662)
Q Consensus 193 ~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~i 267 (662)
.+.++|+||.... +...+ .....+.+.+++.++..+.+...+-..+. .. -.+....++..++|-|-.+..+
T Consensus 131 ~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i---~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 131 KSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-KI---TEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp SSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-CB---CHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 4567777775543 22211 12348999999999999988877643221 11 1345677888999998765443
No 181
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=63.01 E-value=5.6 Score=36.12 Aligned_cols=61 Identities=21% Similarity=0.391 Sum_probs=41.3
Q ss_pred CCCccceeeecCC-CCc-----ccchhhhcCCCccEEeccCCCCCc-----cCCccccccccccEEecCCCcc
Q 044550 428 KLIHLKYLNLSEL-RIE-----RIPETLCELYNLQKLDIRGCQYLR-----GLPAGIRKLMNMRSLLNDGTYL 489 (662)
Q Consensus 428 ~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~l~~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~ 489 (662)
+-..|++|+|+++ .|. .+-+.+..-+.|+.|+|++|. +. .+-..+..=+.|++|+++.|.+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3467888888875 554 344566677788999998887 43 2223334446788888888864
No 182
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=61.46 E-value=3.9 Score=37.14 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=19.0
Q ss_pred ccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecC
Q 044550 557 LYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR 605 (662)
Q Consensus 557 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 605 (662)
|..+..|+.|+|+.+.. .+.....+.+.+.....|++|+|++|.
T Consensus 66 L~~N~~L~~L~L~~n~i-----gd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAI-----SDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HTTCSCCCEEECTTSCC-----BHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HhhCCCcCEEEccCCCC-----ChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 34445555555554432 111122223333344555555555554
No 183
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=48.97 E-value=88 Score=29.55 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=38.6
Q ss_pred CCceEEEEcccHHHHhh--h---CCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCC
Q 044550 193 HGSKIFVTTRNESVARM--M---GSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGL 260 (662)
Q Consensus 193 ~gSrIivTTR~~~v~~~--~---~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~Gl 260 (662)
.+..||.||...+.... . .....+.+.+++.++-.++|...+..... ..... ...+++.+.|.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~ 222 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGC 222 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTC
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCC
Confidence 35668888875533221 1 22347999999999999999887643221 12222 35566677764
No 184
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=42.69 E-value=1.1e+02 Score=30.47 Aligned_cols=91 Identities=9% Similarity=0.006 Sum_probs=53.9
Q ss_pred CCceEEEEcccHHHHhh----h--CCCCeeeCCCCChHHHHHHHHHHhhc-CCCCCCccchHHHHHHHHHHhc---CCch
Q 044550 193 HGSKIFVTTRNESVARM----M--GSTNIISIKQLAEEECWSLFKQLAFF-GRSFEDREKLEPMGRKIARKCK---GLPL 262 (662)
Q Consensus 193 ~gSrIivTTR~~~v~~~----~--~~~~~~~l~~L~~~~s~~Lf~~~af~-~~~~~~~~~~~~~~~~iv~~c~---GlPL 262 (662)
.+.+||+||+....... . .....+.+.+++.++..++|...+-. ....... .+..+.+++.|+ |-|.
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHH
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHH
Confidence 56788889886532111 1 11238999999999999999987531 1111112 245667888887 8876
Q ss_pred -hHHHHHHhh--c---CCCCHHHHHHHHhh
Q 044550 263 -AAKVIGNLL--R---SKSTVKEWQRILES 286 (662)
Q Consensus 263 -ai~~ig~~L--~---~~~~~~~w~~~l~~ 286 (662)
|+..+..+. + ..-+.+.+..++..
T Consensus 240 ~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 240 KAVNLLFRAAQLASGGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHHHTTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 444433322 2 12256677666543
No 185
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=42.38 E-value=99 Score=30.13 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=35.0
Q ss_pred CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHH
Q 044550 213 TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKV 266 (662)
Q Consensus 213 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ 266 (662)
...+.+.+++.++..+++.+.+-.... .--.+..+.+++.+.|.|-.+..
T Consensus 176 ~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 176 GMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHH
T ss_pred CEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHH
Confidence 358999999999999998877643221 11245567788889999855443
No 186
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=42.35 E-value=12 Score=37.10 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=27.9
Q ss_pred cCCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 141 DEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 141 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
..+.+|||+++.+.+.+++..+ +++.|+|+.|+
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~ 42 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRV 42 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTS
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcC
Confidence 4567999999999999998631 58899999999
No 187
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.05 E-value=1.9e+02 Score=28.09 Aligned_cols=70 Identities=6% Similarity=0.022 Sum_probs=43.1
Q ss_pred CceEEEEcccHH-HHhhhC-CCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHH
Q 044550 194 GSKIFVTTRNES-VARMMG-STNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVI 267 (662)
Q Consensus 194 gSrIivTTR~~~-v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~i 267 (662)
..++|++|.... +...+. ....+.+.+++.++..+.+...+-..+. ... .+..+.|++.++|-|-.+..+
T Consensus 163 ~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 163 VTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENV-KCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp TEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred CceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 345666654332 211111 1237899999999999988876643221 111 456788999999998765443
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.42 E-value=60 Score=34.25 Aligned_cols=52 Identities=8% Similarity=0.076 Sum_probs=35.0
Q ss_pred CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcC-CchhHHHHH
Q 044550 213 TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKG-LPLAAKVIG 268 (662)
Q Consensus 213 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~G-lPLai~~ig 268 (662)
...+.+.+++.++..+.+...+..... ...+ +....|++.++| ++-|+..+.
T Consensus 201 ~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 201 CLDIQFRRPDANSIKSRLMTIAIREKF-KLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTC-CCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHcCC-CCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 347899999999999988877654322 1122 345678889998 555555543
No 189
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=38.70 E-value=15 Score=36.37 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.0
Q ss_pred cCCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 141 DEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 141 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
..+.+|||+++.+.+.+ +.. +++.|+|+.|+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~ 41 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRT 41 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTS
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCC
Confidence 44679999999999998 642 58999999999
No 190
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=35.84 E-value=23 Score=30.96 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=26.7
Q ss_pred CceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 143 GEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 143 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
..++|+++.++.+.+++.... ...+-|+|..|+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~ 54 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGV 54 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTS
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCC
Confidence 468999999999999987633 245679999998
No 191
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=33.42 E-value=26 Score=18.55 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHHhc
Q 044550 36 DKAVTLWLDQLKDS 49 (662)
Q Consensus 36 ~~~~~~Wl~~vr~~ 49 (662)
-+.|+.|+..+|-.
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 45789999998753
No 192
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=29.11 E-value=1.1e+02 Score=21.41 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=33.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHhcccc
Q 044550 5 TGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDD 52 (662)
Q Consensus 5 ~~v~~~~~~l~~~L~~i~a~L~~a~~~~~~~~~~~~~Wl~~vr~~ayd 52 (662)
..++++++.|+.+...|...++.--+........++.-+++.-|-++|
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~~~~~ 57 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAWD 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Confidence 346899999999999999999875433222256677777776555544
No 193
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.81 E-value=2.9e+02 Score=28.29 Aligned_cols=53 Identities=19% Similarity=0.075 Sum_probs=33.9
Q ss_pred CCeeeCCCCChHHHHHHHHHHhhcCCCC---CCccchHHHHHHHHHHhcCCchhHH
Q 044550 213 TNIISIKQLAEEECWSLFKQLAFFGRSF---EDREKLEPMGRKIARKCKGLPLAAK 265 (662)
Q Consensus 213 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~---~~~~~~~~~~~~iv~~c~GlPLai~ 265 (662)
..++.+++++.++-..++.+.+-..... ....--.+..+.+++.++|-+-.+.
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 3488999999999999988876431110 0011124556778888888775544
No 194
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=27.77 E-value=25 Score=35.21 Aligned_cols=38 Identities=16% Similarity=-0.001 Sum_probs=29.0
Q ss_pred CCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 142 EGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 142 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
+++++||+++++++.+++..-.. ....+.+.|+|++|+
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~ 56 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGT 56 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCC
Confidence 36799999999999988865211 124468899999998
No 195
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=27.61 E-value=33 Score=29.80 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=26.4
Q ss_pred CceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550 143 GEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181 (662)
Q Consensus 143 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi 181 (662)
.+++|++.+.+.+.+++.... ...+-|+|..|+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~ 54 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGV 54 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGG
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCC
Confidence 468999999999999997532 244579999998
No 196
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=27.49 E-value=2.4e+02 Score=25.81 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=39.1
Q ss_pred CceEEEEcccHHHHh-hh----CCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCch
Q 044550 194 GSKIFVTTRNESVAR-MM----GSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPL 262 (662)
Q Consensus 194 gSrIivTTR~~~v~~-~~----~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPL 262 (662)
+..||.||....... .. .....+.+.+.+.++-.+++...+..... ..........+++.+.|.+-
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCH
Confidence 345666665543221 11 12357889999999999998887643221 11112234677888888754
No 197
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=26.63 E-value=36 Score=18.79 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=14.7
Q ss_pred hcCCchhHHHHHHhhcCC
Q 044550 257 CKGLPLAAKVIGNLLRSK 274 (662)
Q Consensus 257 c~GlPLai~~ig~~L~~~ 274 (662)
-.-+|||+.+.++.++..
T Consensus 8 rrklplavav~agv~~aq 25 (28)
T 2vda_B 8 RRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCTHHHHHHHHTTCCC
T ss_pred cccCchHHHHHHHHhHhh
Confidence 356999999999988754
No 198
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.34 E-value=1.4e+02 Score=20.26 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHH
Q 044550 4 VTGVDEEVKKLTINLEAIRAVLEDA 28 (662)
Q Consensus 4 ~~~v~~~~~~l~~~L~~i~a~L~~a 28 (662)
+..++++++.|+.+...|+..+++-
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeE 36 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEE 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999863
No 199
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=24.38 E-value=1.6e+02 Score=26.40 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=35.7
Q ss_pred CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHH
Q 044550 213 TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKV 266 (662)
Q Consensus 213 ~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ 266 (662)
...+++.+++.++..+++...+..... .. -.+....+++.++|-+-.+..
T Consensus 166 ~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~l~~ 215 (242)
T 3bos_A 166 GLTYQLQPMMDDEKLAALQRRAAMRGL-QL---PEDVGRFLLNRMARDLRTLFD 215 (242)
T ss_dssp SEEEECCCCCGGGHHHHHHHHHHHTTC-CC---CHHHHHHHHHHTTTCHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHccCCHHHHHH
Confidence 368999999999999999887643221 11 145667888899988766543
No 200
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.35 E-value=1e+02 Score=26.09 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hccCcHHHHHHHHHHHhcccccccc
Q 044550 9 EEVKKLTINLEAIRAVLEDAKKR----QMQHDKAVTLWLDQLKDSSDDMEDI 56 (662)
Q Consensus 9 ~~~~~l~~~L~~i~a~L~~a~~~----~~~~~~~~~~Wl~~vr~~ayd~eD~ 56 (662)
+.++.+++|+..++.-+..++.+ +...+.-|.-||.+.-.-|-.+.+.
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~a 147 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNSE 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677788888888777776654 1211567899999998888777776
No 201
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=20.70 E-value=3.6e+02 Score=25.89 Aligned_cols=64 Identities=11% Similarity=-0.070 Sum_probs=36.9
Q ss_pred CCceEEEEcccHHHHh-hh--CCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCC
Q 044550 193 HGSKIFVTTRNESVAR-MM--GSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGL 260 (662)
Q Consensus 193 ~gSrIivTTR~~~v~~-~~--~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~Gl 260 (662)
.+..||.||...+... .+ .....+.+...+.++-.++|..++..... ... ......+++.+.|.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~l~~la~~t~g~ 219 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-VLT---KEDYRTLGAMTEGY 219 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-CCC---HHHHHHHHHTTTTC
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-CCC---HHHHHHHHHHcCCC
Confidence 3445666776542221 11 12357788889999999999887643221 111 23446677777774
No 202
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=20.60 E-value=4.7e+02 Score=25.18 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=60.5
Q ss_pred HHHHHHHHhccCccCCCCeEEEEEecCCCc-----ccchhhhhcCCCCceEEEEcccHH-HHhhh-CCCCeeeCCCCChH
Q 044550 152 KNELLSKLLCESSEQQKGLHVISLVGLGGI-----EPFFLRLKNGLHGSKIFVTTRNES-VARMM-GSTNIISIKQLAEE 224 (662)
Q Consensus 152 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----~~F~~~l~~~~~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~ 224 (662)
..++++.+..... ....+||-|-..-.+ +.+-..+.....+..+|++|.+.+ +...+ .....+++.+++++
T Consensus 93 ir~l~~~~~~~~~--~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~ 170 (334)
T 1a5t_A 93 VREVTEKLNEHAR--LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQ 170 (334)
T ss_dssp HHHHHHHTTSCCT--TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHH
T ss_pred HHHHHHHHhhccc--cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHH
Confidence 4455555543322 235677766554333 111133333344567777766542 33332 22458999999999
Q ss_pred HHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHH
Q 044550 225 ECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKV 266 (662)
Q Consensus 225 ~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ 266 (662)
+..+.+.+.. . .. .+....+++.++|-|..+..
T Consensus 171 ~~~~~L~~~~----~--~~---~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 171 YAVTWLSREV----T--MS---QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHHHHHHHHC----C--CC---HHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhc----C--CC---HHHHHHHHHHcCCCHHHHHH
Confidence 9998887764 1 11 24457789999999976654
Done!