Query 044552
Match_columns 162
No_of_seqs 145 out of 1194
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 99.9 7.3E-27 1.6E-31 172.0 12.0 112 6-126 14-133 (137)
2 PRK11597 heat shock chaperone 99.9 1.5E-26 3.2E-31 171.0 11.8 107 18-141 31-138 (142)
3 COG0071 IbpA Molecular chapero 99.9 5.6E-26 1.2E-30 169.0 13.4 97 18-117 39-135 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 1.5E-25 3.4E-30 154.3 11.8 92 21-114 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.9 1.5E-23 3.3E-28 144.5 11.6 91 20-114 1-93 (93)
6 PF00011 HSP20: Hsp20/alpha cr 99.9 2.7E-23 5.9E-28 145.0 13.0 91 23-118 1-91 (102)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 4.6E-23 1E-27 141.6 12.1 88 20-112 1-89 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 1.6E-22 3.4E-27 138.0 10.8 82 23-114 4-86 (86)
9 cd06498 ACD_alphaB-crystallin_ 99.9 5.3E-22 1.1E-26 134.8 10.4 81 24-114 2-83 (84)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 6.3E-22 1.4E-26 134.1 10.6 82 23-114 1-83 (83)
11 cd06475 ACD_HspB1_like Alpha c 99.9 1.7E-21 3.7E-26 132.9 10.7 82 22-112 3-85 (86)
12 cd06476 ACD_HspB2_like Alpha c 99.9 3.3E-21 7.1E-26 130.6 10.5 81 24-114 2-83 (83)
13 cd06479 ACD_HspB7_like Alpha c 99.9 2.3E-21 5E-26 130.8 9.6 78 23-112 2-80 (81)
14 cd06481 ACD_HspB9_like Alpha c 99.8 9.9E-21 2.1E-25 129.4 10.4 82 26-112 4-86 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.8 3.3E-20 7.2E-25 125.1 11.4 88 23-114 1-88 (88)
16 cd06477 ACD_HspB3_Like Alpha c 99.8 2.5E-20 5.3E-25 126.3 10.4 79 25-112 3-82 (83)
17 cd06526 metazoan_ACD Alpha-cry 99.8 6.1E-20 1.3E-24 124.2 9.5 77 28-114 6-83 (83)
18 cd06482 ACD_HspB10 Alpha cryst 99.8 1E-19 2.2E-24 124.2 9.5 80 27-112 6-86 (87)
19 cd06480 ACD_HspB8_like Alpha-c 99.7 1.1E-17 2.3E-22 115.1 9.5 80 24-112 10-90 (91)
20 KOG0710 Molecular chaperone (s 99.7 4.8E-17 1E-21 126.5 6.7 100 18-119 83-184 (196)
21 KOG3591 Alpha crystallins [Pos 99.7 3.4E-15 7.3E-20 113.9 13.2 104 20-143 63-167 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 4.5E-14 9.8E-19 91.8 9.6 80 24-114 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 2.5E-11 5.4E-16 80.4 9.2 70 24-116 1-70 (78)
24 cd06463 p23_like Proteins cont 99.1 2.2E-09 4.8E-14 70.9 9.4 75 24-116 1-75 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 2.4E-09 5.1E-14 81.5 10.1 78 18-116 90-169 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 2.1E-08 4.6E-13 67.0 7.9 76 23-116 1-76 (84)
27 PF04969 CS: CS domain; Inter 98.7 9.5E-07 2.1E-11 57.7 11.7 77 20-114 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.4 5.8E-06 1.3E-10 58.1 10.4 78 20-116 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.2 9.8E-06 2.1E-10 66.9 9.1 65 28-112 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.2 1.9E-05 4.1E-10 52.9 8.4 76 23-116 1-76 (84)
31 cd06467 p23_NUDC_like p23_like 98.1 5.3E-05 1.1E-09 50.5 9.1 74 22-116 1-76 (85)
32 cd06488 p23_melusin_like p23_l 98.0 9E-05 2E-09 50.2 9.9 78 21-116 2-79 (87)
33 cd06468 p23_CacyBP p23_like do 98.0 0.00014 3.1E-09 49.3 10.3 79 20-116 2-84 (92)
34 cd06493 p23_NUDCD1_like p23_NU 97.9 0.00021 4.6E-09 48.0 9.4 74 22-116 1-76 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.6 0.0016 3.4E-08 44.9 10.0 77 18-116 4-82 (93)
36 cd00237 p23 p23 binds heat sho 97.5 0.003 6.6E-08 44.5 10.6 77 20-116 2-78 (106)
37 PLN03088 SGT1, suppressor of 97.2 0.0026 5.6E-08 53.6 8.9 80 19-116 156-235 (356)
38 KOG1309 Suppressor of G2 allel 97.0 0.0029 6.2E-08 48.5 6.9 80 19-116 3-82 (196)
39 cd06490 p23_NCB5OR p23_like do 96.9 0.021 4.6E-07 38.5 10.0 75 22-116 1-79 (87)
40 cd06492 p23_mNUDC_like p23-lik 96.4 0.05 1.1E-06 36.8 9.0 74 22-116 1-78 (87)
41 cd06495 p23_NUDCD3_like p23-li 95.4 0.33 7.1E-06 33.9 9.7 80 19-116 4-86 (102)
42 KOG3158 HSP90 co-chaperone p23 91.2 0.89 1.9E-05 34.8 6.2 79 19-116 7-85 (180)
43 PF13349 DUF4097: Domain of un 86.6 9.2 0.0002 27.8 9.0 86 18-112 64-149 (166)
44 COG5091 SGT1 Suppressor of G2 86.4 0.9 1.9E-05 37.5 3.5 82 18-116 175-256 (368)
45 KOG2265 Nuclear distribution p 83.0 11 0.00023 29.0 7.8 78 18-116 17-96 (179)
46 PF14913 DPCD: DPCD protein fa 82.6 18 0.0004 28.1 9.0 80 18-117 85-171 (194)
47 KOG1667 Zn2+-binding protein M 79.6 11 0.00023 30.8 7.1 81 19-116 214-294 (320)
48 cd06478 ACD_HspB4-5-6 Alpha-cr 75.1 7.8 0.00017 25.6 4.5 34 80-115 6-39 (83)
49 cd06476 ACD_HspB2_like Alpha c 74.6 6 0.00013 26.3 3.9 35 80-116 6-40 (83)
50 cd06482 ACD_HspB10 Alpha cryst 74.5 7.6 0.00016 26.2 4.4 34 81-116 8-41 (87)
51 cd06477 ACD_HspB3_Like Alpha c 74.3 6.4 0.00014 26.3 3.9 35 80-116 6-40 (83)
52 cd06497 ACD_alphaA-crystallin_ 74.0 7.5 0.00016 25.9 4.3 35 80-116 9-43 (86)
53 cd06464 ACD_sHsps-like Alpha-c 72.1 9.5 0.00021 24.4 4.4 34 26-60 53-87 (88)
54 cd06471 ACD_LpsHSP_like Group 72.1 6.5 0.00014 26.2 3.6 30 29-59 62-91 (93)
55 cd06472 ACD_ScHsp26_like Alpha 70.0 10 0.00022 25.3 4.2 31 28-59 59-90 (92)
56 cd06526 metazoan_ACD Alpha-cry 68.8 8.1 0.00018 25.3 3.5 31 29-60 50-82 (83)
57 cd06479 ACD_HspB7_like Alpha c 68.2 11 0.00024 25.0 4.0 32 80-112 7-38 (81)
58 cd06475 ACD_HspB1_like Alpha c 67.9 13 0.00028 24.8 4.3 35 80-116 9-43 (86)
59 cd06498 ACD_alphaB-crystallin_ 67.6 13 0.00027 24.7 4.2 32 80-112 6-37 (84)
60 PF08308 PEGA: PEGA domain; I 66.9 22 0.00047 22.3 5.1 44 19-62 24-68 (71)
61 cd06470 ACD_IbpA-B_like Alpha- 66.2 15 0.00033 24.5 4.4 34 81-116 11-44 (90)
62 cd06480 ACD_HspB8_like Alpha-c 66.0 15 0.00032 25.0 4.4 30 29-59 58-89 (91)
63 PF00011 HSP20: Hsp20/alpha cr 65.6 19 0.00041 24.1 4.9 34 80-115 6-39 (102)
64 KOG3260 Calcyclin-binding prot 65.3 28 0.00061 27.1 6.1 77 22-116 77-154 (224)
65 cd06481 ACD_HspB9_like Alpha c 62.8 17 0.00037 24.3 4.1 35 80-116 6-40 (87)
66 cd06469 p23_DYX1C1_like p23_li 62.7 27 0.00058 22.1 5.0 33 29-62 36-69 (78)
67 PRK10743 heat shock protein Ib 61.2 16 0.00034 26.7 4.1 34 81-116 45-78 (137)
68 PRK05518 rpl6p 50S ribosomal p 60.8 54 0.0012 25.1 7.1 45 42-112 13-57 (180)
69 KOG3591 Alpha crystallins [Pos 59.6 17 0.00037 27.7 4.1 34 31-64 117-151 (173)
70 TIGR03653 arch_L6P archaeal ri 59.2 65 0.0014 24.4 7.2 45 42-112 7-51 (170)
71 PF04972 BON: BON domain; Int 57.1 29 0.00064 21.1 4.3 26 38-64 12-37 (64)
72 PF01491 Frataxin_Cyay: Fratax 56.5 16 0.00035 25.6 3.3 17 96-112 30-46 (109)
73 PF12992 DUF3876: Domain of un 56.1 51 0.0011 22.6 5.7 40 18-58 24-68 (95)
74 PTZ00027 60S ribosomal protein 55.6 62 0.0013 25.0 6.7 47 42-112 13-59 (190)
75 TIGR03654 L6_bact ribosomal pr 55.3 70 0.0015 24.3 6.9 44 42-112 11-54 (175)
76 PF01954 DUF104: Protein of un 55.2 12 0.00027 23.4 2.3 17 96-112 3-19 (60)
77 COG0071 IbpA Molecular chapero 55.2 43 0.00094 24.3 5.6 35 29-64 100-135 (146)
78 PRK11597 heat shock chaperone 53.8 23 0.00049 26.1 3.9 33 82-116 44-76 (142)
79 cd06467 p23_NUDC_like p23_like 52.7 55 0.0012 21.0 5.3 32 81-112 8-39 (85)
80 PRK05498 rplF 50S ribosomal pr 50.2 81 0.0018 24.0 6.6 44 42-112 12-55 (178)
81 PRK00446 cyaY frataxin-like pr 50.0 31 0.00067 24.1 3.8 15 98-112 29-43 (105)
82 cd00503 Frataxin Frataxin is a 50.0 39 0.00085 23.5 4.4 17 96-112 28-44 (105)
83 CHL00140 rpl6 ribosomal protei 48.9 89 0.0019 23.8 6.6 44 42-112 12-55 (178)
84 TIGR03421 FeS_CyaY iron donor 46.5 41 0.00088 23.3 4.0 15 98-112 27-41 (102)
85 TIGR03422 mito_frataxin fratax 45.5 32 0.0007 23.7 3.3 14 99-112 30-43 (97)
86 PF00347 Ribosomal_L6: Ribosom 45.1 45 0.00097 21.1 3.9 46 42-112 2-47 (77)
87 PTZ00179 60S ribosomal protein 40.5 1.3E+02 0.0028 23.3 6.3 46 42-112 12-58 (189)
88 PRK10568 periplasmic protein; 38.8 59 0.0013 25.2 4.3 25 38-63 73-97 (203)
89 cd06494 p23_NUDCD2_like p23-li 35.8 1.2E+02 0.0027 20.4 5.0 33 80-112 14-46 (93)
90 KOG3413 Mitochondrial matrix p 30.9 24 0.00053 26.3 0.9 22 91-112 67-88 (156)
91 PRK11198 LysM domain/BON super 29.5 88 0.0019 22.9 3.7 26 38-64 38-63 (147)
92 PF11741 AMIN: AMIN domain; I 28.9 1.6E+02 0.0036 18.9 9.5 16 23-38 2-17 (95)
93 cd02175 GH16_lichenase lichena 28.8 1.6E+02 0.0035 22.6 5.3 49 41-92 30-80 (212)
94 COG0097 RplF Ribosomal protein 27.5 2.8E+02 0.0062 21.3 6.2 21 40-61 10-30 (178)
95 PF10618 Tail_tube: Phage tail 26.3 1.9E+02 0.0042 20.4 4.9 63 46-108 17-87 (119)
96 cd06493 p23_NUDCD1_like p23_NU 26.2 1.9E+02 0.0041 18.7 5.2 31 82-112 9-39 (85)
97 PF08845 SymE_toxin: Toxin Sym 25.4 1.1E+02 0.0023 18.9 3.0 24 34-58 32-56 (57)
98 COG1965 CyaY Protein implicate 24.6 1.2E+02 0.0026 21.3 3.4 17 98-115 30-46 (106)
99 cd02178 GH16_beta_agarase Beta 24.3 1.4E+02 0.0031 23.7 4.4 45 47-92 60-110 (258)
100 KOG4356 Uncharacterized conser 23.1 16 0.00034 30.6 -1.5 68 25-112 236-306 (310)
101 PF07873 YabP: YabP family; I 22.3 55 0.0012 20.6 1.3 22 39-61 22-43 (66)
102 PF03368 Dicer_dimer: Dicer di 21.2 1.7E+02 0.0036 19.5 3.6 28 15-42 17-44 (90)
103 TIGR02856 spore_yqfC sporulati 21.1 72 0.0016 21.3 1.7 24 37-61 38-61 (85)
104 COG4004 Uncharacterized protei 21.1 2.5E+02 0.0055 19.3 4.3 34 22-60 26-59 (96)
105 PF03983 SHD1: SLA1 homology d 20.1 89 0.0019 20.3 1.9 30 23-52 14-43 (70)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.94 E-value=7.3e-27 Score=171.98 Aligned_cols=112 Identities=16% Similarity=0.331 Sum_probs=93.3
Q ss_pred CCcCCCCCCCCC-------CCceeeEEE-cCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEc
Q 044552 6 VGISSLVHPYGG-------IDTQMDWKE-TPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRER 77 (162)
Q Consensus 6 ~~~~~~f~~~~~-------~~p~~di~e-~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~ 77 (162)
..|+++|+.|+. ..|++||.+ ++++|.|+++|||++++||+|++.++ .|+|+|++..+ .+..+|+++|+
T Consensus 14 ~~~d~lf~~~~~~~~~~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~--~~~~~~~~~Er 90 (137)
T PRK10743 14 IGFDRLFNLLENNQSQSNGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADE--QKERTYLYQGI 90 (137)
T ss_pred cCHHHHhhhhhhhhhcccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECcc--ccCCcEEEEEE
Confidence 355666666553 348999994 89999999999999999999999998 89999997654 34567999999
Q ss_pred CcccEEEEEEECCCCcccCceEEEEeCCEEEEEEcCcCCchhhccCccc
Q 044552 78 PHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDDELTKKKNSKH 126 (162)
Q Consensus 78 ~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~~~~~~~~~~~~ 126 (162)
. +++|.|+|.||++||.++ |+|+||+|+|+|| |.. ++++++++
T Consensus 91 ~-~g~F~R~~~LP~~Vd~~~--A~~~dGVL~I~lP-K~~--~~~~~~r~ 133 (137)
T PRK10743 91 A-ERNFERKFQLAENIHVRG--ANLVNGLLYIDLE-RVI--PEAKKPRR 133 (137)
T ss_pred E-CCEEEEEEECCCCcccCc--CEEeCCEEEEEEe-CCC--ccccCCeE
Confidence 9 999999999999999994 9999999999999 864 22445554
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.94 E-value=1.5e-26 Score=171.05 Aligned_cols=107 Identities=19% Similarity=0.371 Sum_probs=92.1
Q ss_pred CCceeeEEEc-CCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccC
Q 044552 18 IDTQMDWKET-PHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVD 96 (162)
Q Consensus 18 ~~p~~di~e~-~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~ 96 (162)
..|++||+|+ +++|+|+++|||++++||+|.++++ .|+|+|++..+ .++..|+++|+. ++.|.|+|.||.+||.+
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~--~~~~~~~~~Er~-~g~F~R~f~LP~~vd~~ 106 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQP--EKEVKWLHQGLV-NQPFSLSFTLAENMEVS 106 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEccc--cCCCcEEEEEEe-CcEEEEEEECCCCcccC
Confidence 6799999984 7799999999999999999999998 79999997642 356779999999 99999999999999998
Q ss_pred ceEEEEeCCEEEEEEcCcCCchhhccCcccccCCceeEEEEecCC
Q 044552 97 EIRASMRDGVLTITVPIKDDELTKKKNSKHKKTTSSVSVEISGGD 141 (162)
Q Consensus 97 ~i~A~~~nGvL~I~lP~K~~~~~~~~~~~~~~~~~~~~I~i~~~~ 141 (162)
+|.|+||+|+|+|| |.. ++..++++ |+|+...
T Consensus 107 --~A~~~nGVL~I~lP-K~~--~~~~~~rk--------I~I~~~~ 138 (142)
T PRK11597 107 --GATFVNGLLHIDLI-RNE--PEAIAPQR--------IAISERP 138 (142)
T ss_pred --cCEEcCCEEEEEEe-ccC--ccccCCcE--------EEECCcc
Confidence 69999999999999 864 22445654 8887643
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.6e-26 Score=168.96 Aligned_cols=97 Identities=38% Similarity=0.664 Sum_probs=91.5
Q ss_pred CCceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCc
Q 044552 18 IDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDE 97 (162)
Q Consensus 18 ~~p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~ 97 (162)
.+|++||+++++.|.|.++|||+++++|+|++.++ .|+|+|++..+...+...|+++++. ++.|+|+|.||..|+.+.
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~-~l~I~g~~~~~~~~~~~~~~~~e~~-~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERA-YGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECC-EEEEEEEecccccccCCceEEEEEE-eeeEEEEEECcccccccc
Confidence 47999999999999999999999999999999999 7999999987666777889999999 999999999999999999
Q ss_pred eEEEEeCCEEEEEEcCcCCc
Q 044552 98 IRASMRDGVLTITVPIKDDE 117 (162)
Q Consensus 98 i~A~~~nGvL~I~lP~K~~~ 117 (162)
++|.|+||+|+|+|| |.+.
T Consensus 117 ~~A~~~nGvL~I~lp-k~~~ 135 (146)
T COG0071 117 IKAKYKNGLLTVTLP-KAEP 135 (146)
T ss_pred eeeEeeCcEEEEEEe-cccc
Confidence 999999999999999 8883
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.93 E-value=1.5e-25 Score=154.34 Aligned_cols=92 Identities=57% Similarity=1.036 Sum_probs=85.0
Q ss_pred eeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEE
Q 044552 21 QMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRA 100 (162)
Q Consensus 21 ~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A 100 (162)
++||+|+++.|+|.++|||+++++|+|++.+++.|+|+|++......+...|+++|+. ++.|.|+|.||.+||.++|+|
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~-~g~f~r~i~LP~~v~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERS-SGRFVRRFRLPENADADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEe-ccEEEEEEECCCCCCHHHCEE
Confidence 4799999999999999999999999999986547999999876655667789999999 999999999999999999999
Q ss_pred EEeCCEEEEEEcCc
Q 044552 101 SMRDGVLTITVPIK 114 (162)
Q Consensus 101 ~~~nGvL~I~lP~K 114 (162)
.|+||+|+|++| |
T Consensus 80 ~~~nGvL~I~lP-K 92 (92)
T cd06472 80 FLENGVLTVTVP-K 92 (92)
T ss_pred EEECCEEEEEec-C
Confidence 999999999999 6
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.91 E-value=1.5e-23 Score=144.46 Aligned_cols=91 Identities=46% Similarity=0.701 Sum_probs=82.3
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEecccc--CCCCcEEEEEcCcccEEEEEEECCCCcccCc
Q 044552 20 TQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPE--DKGDKWHCRERPHGGSFTRQFRLPDDVKVDE 97 (162)
Q Consensus 20 p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~--~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~ 97 (162)
+++||+|+++.|+|.++|||+++++|+|.+.++ .|+|+|++....+ .....|+++|+. ++.|.|+|.|| ++|.+.
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~-~g~f~r~~~lp-~v~~~~ 77 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERY-YGSFSRSFYLP-NVDEEE 77 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeee-ccEEEEEEECC-CCCHHH
Confidence 468999999999999999999999999999998 7999999975432 334578889999 99999999999 799999
Q ss_pred eEEEEeCCEEEEEEcCc
Q 044552 98 IRASMRDGVLTITVPIK 114 (162)
Q Consensus 98 i~A~~~nGvL~I~lP~K 114 (162)
|+|+|+||+|+|++| |
T Consensus 78 i~A~~~dGvL~I~lP-K 93 (93)
T cd06471 78 IKAKYENGVLKITLP-K 93 (93)
T ss_pred CEEEEECCEEEEEEc-C
Confidence 999999999999999 6
No 6
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.91 E-value=2.7e-23 Score=145.02 Aligned_cols=91 Identities=46% Similarity=0.756 Sum_probs=76.3
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEE
Q 044552 23 DWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASM 102 (162)
Q Consensus 23 di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~ 102 (162)
||.+++++|.|.++|||+++++|+|+++++ .|+|+|++. .......++..++. .+.|.|+|.||.++|.++|+|.|
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~--~~~~~~~~~~~~~~-~~~f~r~~~lP~~vd~~~i~a~~ 76 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRK--EEEEDDRYYRSERR-YGSFERSIRLPEDVDPDKIKASY 76 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEE--GEECTTCEEEE-S--SEEEEEEEE-STTB-GGG-EEEE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceee--eeeeeeeeeecccc-cceEEEEEcCCCcCCcceEEEEe
Confidence 799999999999999999999999999999 699999998 33445667778888 99999999999999999999999
Q ss_pred eCCEEEEEEcCcCCch
Q 044552 103 RDGVLTITVPIKDDEL 118 (162)
Q Consensus 103 ~nGvL~I~lP~K~~~~ 118 (162)
+||+|+|++| |....
T Consensus 77 ~~GvL~I~~p-k~~~~ 91 (102)
T PF00011_consen 77 ENGVLTITIP-KKEEE 91 (102)
T ss_dssp TTSEEEEEEE-BSSSC
T ss_pred cCCEEEEEEE-ccccc
Confidence 9999999999 87744
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.90 E-value=4.6e-23 Score=141.60 Aligned_cols=88 Identities=23% Similarity=0.466 Sum_probs=81.2
Q ss_pred ceeeEEEcC-CeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCce
Q 044552 20 TQMDWKETP-HAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEI 98 (162)
Q Consensus 20 p~~di~e~~-~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i 98 (162)
|++||++++ +.|+|.++|||+++++|+|.+.++ .|+|+|++..... +..+|+++|+. ++.|.|+|.||.++|..
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~-~~~~~~~~e~~-~g~f~R~~~LP~~vd~~-- 75 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEEN-EEREYLHRGIA-KRAFERSFNLADHVKVK-- 75 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccc-CCCcEEEEEEe-ceEEEEEEECCCCceEC--
Confidence 689999975 999999999999999999999998 7999999987654 66789999999 99999999999999985
Q ss_pred EEEEeCCEEEEEEc
Q 044552 99 RASMRDGVLTITVP 112 (162)
Q Consensus 99 ~A~~~nGvL~I~lP 112 (162)
+|.|+||+|+|+||
T Consensus 76 ~A~~~~GvL~I~l~ 89 (90)
T cd06470 76 GAELENGLLTIDLE 89 (90)
T ss_pred eeEEeCCEEEEEEE
Confidence 89999999999998
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.89 E-value=1.6e-22 Score=138.00 Aligned_cols=82 Identities=27% Similarity=0.502 Sum_probs=73.4
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEE
Q 044552 23 DWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASM 102 (162)
Q Consensus 23 di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~ 102 (162)
+|.+++++|.|.++||||++++|+|++.++ .|+|+|++.... +...|+ ..+|.|+|.||.+||.++|+|.|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~------~~ef~R~~~LP~~Vd~~~i~A~~ 74 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQ--DDHGYI------SREFHRRYRLPSNVDQSAITCSL 74 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccee--CCCCEE------EEEEEEEEECCCCCChHHeEEEe
Confidence 799999999999999999999999999998 799999975432 334566 55799999999999999999999
Q ss_pred -eCCEEEEEEcCc
Q 044552 103 -RDGVLTITVPIK 114 (162)
Q Consensus 103 -~nGvL~I~lP~K 114 (162)
+||+|+|++| |
T Consensus 75 ~~dGvL~I~~P-K 86 (86)
T cd06497 75 SADGMLTFSGP-K 86 (86)
T ss_pred CCCCEEEEEec-C
Confidence 7999999999 6
No 9
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.88 E-value=5.3e-22 Score=134.82 Aligned_cols=81 Identities=26% Similarity=0.510 Sum_probs=71.9
Q ss_pred EEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEe
Q 044552 24 WKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMR 103 (162)
Q Consensus 24 i~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~ 103 (162)
+++++++|.|.++||||++++|+|++.++ .|+|+|++.... +...|+ .++|.|+|.||.+||.++|+|+|.
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~------~~eF~R~~~LP~~vd~~~i~A~~~ 72 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGD-FIEIHGKHEERQ--DEHGFI------SREFQRKYRIPADVDPLTITSSLS 72 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccee--CCCCEE------EEEEEEEEECCCCCChHHcEEEeC
Confidence 67889999999999999999999999998 799999875433 344566 567999999999999999999995
Q ss_pred -CCEEEEEEcCc
Q 044552 104 -DGVLTITVPIK 114 (162)
Q Consensus 104 -nGvL~I~lP~K 114 (162)
||+|+|++| |
T Consensus 73 ~dGvL~I~lP-k 83 (84)
T cd06498 73 PDGVLTVCGP-R 83 (84)
T ss_pred CCCEEEEEEe-C
Confidence 999999999 5
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.88 E-value=6.3e-22 Score=134.14 Aligned_cols=82 Identities=27% Similarity=0.519 Sum_probs=72.1
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEE
Q 044552 23 DWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASM 102 (162)
Q Consensus 23 di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~ 102 (162)
+|.+++++|.|.++||||++++|+|++.++ .|+|+|++.... +...|+ ...|.|+|.||.+||.++|+|.|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~--~~~~~~------~~ef~R~~~LP~~vd~~~i~A~~ 71 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQ--DEHGFI------SREFHRRYRLPPGVDPAAITSSL 71 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEc--CCCCEE------EEEEEEEEECCCCcChHHeEEEE
Confidence 478899999999999999999999999998 799999875432 234566 45699999999999999999999
Q ss_pred -eCCEEEEEEcCc
Q 044552 103 -RDGVLTITVPIK 114 (162)
Q Consensus 103 -~nGvL~I~lP~K 114 (162)
+||+|+|++| |
T Consensus 72 ~~dGvL~I~~P-K 83 (83)
T cd06478 72 SADGVLTISGP-R 83 (83)
T ss_pred CCCCEEEEEec-C
Confidence 6999999999 6
No 11
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=1.7e-21 Score=132.89 Aligned_cols=82 Identities=22% Similarity=0.490 Sum_probs=73.1
Q ss_pred eeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEE
Q 044552 22 MDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRAS 101 (162)
Q Consensus 22 ~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~ 101 (162)
.+|+|+++.|.|.++|||+++++|+|++.++ .|+|+|++.... +...+. .++|.|+|.||.+||.++|+|.
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~------~~~f~R~f~LP~~vd~~~v~A~ 73 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQ--DEHGFV------SRCFTRKYTLPPGVDPTAVTSS 73 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECC-EEEEEEEECcCc--CCCCEE------EEEEEEEEECCCCCCHHHcEEE
Confidence 4899999999999999999999999999998 799999986432 223454 5689999999999999999999
Q ss_pred Ee-CCEEEEEEc
Q 044552 102 MR-DGVLTITVP 112 (162)
Q Consensus 102 ~~-nGvL~I~lP 112 (162)
|. ||+|+|++|
T Consensus 74 ~~~dGvL~I~lP 85 (86)
T cd06475 74 LSPDGILTVEAP 85 (86)
T ss_pred ECCCCeEEEEec
Confidence 97 999999999
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.86 E-value=3.3e-21 Score=130.64 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=71.0
Q ss_pred EEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEe
Q 044552 24 WKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMR 103 (162)
Q Consensus 24 i~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~ 103 (162)
+..++++|.|.++||||++++|+|++.++ .|+|+|++.... +...|+ .+.|.|+|.||.+||.++|+|.|.
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~--~~~~~~------~~eF~R~~~LP~~vd~~~v~A~~~ 72 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRM--DRHGFV------SREFTRTYILPMDVDPLLVRASLS 72 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccee--cCCCEE------EEEEEEEEECCCCCChhhEEEEec
Confidence 45678999999999999999999999999 799999985432 334465 667999999999999999999996
Q ss_pred -CCEEEEEEcCc
Q 044552 104 -DGVLTITVPIK 114 (162)
Q Consensus 104 -nGvL~I~lP~K 114 (162)
||+|+|++| |
T Consensus 73 ~dGvL~I~~P-r 83 (83)
T cd06476 73 HDGILCIQAP-R 83 (83)
T ss_pred CCCEEEEEec-C
Confidence 999999999 5
No 13
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.86 E-value=2.3e-21 Score=130.75 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=70.8
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEE
Q 044552 23 DWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASM 102 (162)
Q Consensus 23 di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~ 102 (162)
||.|++++|.|.++||||++++|+|++.++ .|+|+|+++... +. . +++|.|+|.||.+||.++|+|.|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~-~L~I~ger~~~~----~~------~-~g~F~R~~~LP~~vd~e~v~A~l 69 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNN-QIEVHAEKLASD----GT------V-MNTFTHKCQLPEDVDPTSVSSSL 69 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEeccC----CC------E-EEEEEEEEECCCCcCHHHeEEEe
Confidence 689999999999999999999999999998 899999986432 11 2 78999999999999999999998
Q ss_pred -eCCEEEEEEc
Q 044552 103 -RDGVLTITVP 112 (162)
Q Consensus 103 -~nGvL~I~lP 112 (162)
+||+|+|+++
T Consensus 70 ~~~GvL~I~~~ 80 (81)
T cd06479 70 GEDGTLTIKAR 80 (81)
T ss_pred cCCCEEEEEec
Confidence 9999999998
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.85 E-value=9.9e-21 Score=129.35 Aligned_cols=82 Identities=24% Similarity=0.514 Sum_probs=71.7
Q ss_pred EcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEE-eC
Q 044552 26 ETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASM-RD 104 (162)
Q Consensus 26 e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~-~n 104 (162)
+..+.|.|.++||||.+++|+|++.++ .|+|+|++......+...|.+ . +++|.|+|.||.+||.+.|+|.| +|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~~---~-~~~F~R~~~LP~~Vd~~~i~A~~~~d 78 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGR-KLVVTGKREKKNEDEKGSFSY---E-YQEFVREAQLPEHVDPEAVTCSLSPS 78 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECC-EEEEEEEEeeecccCCCcEEE---E-eeEEEEEEECCCCcChHHeEEEeCCC
Confidence 457899999999999999999999998 799999987654444444542 2 78999999999999999999999 99
Q ss_pred CEEEEEEc
Q 044552 105 GVLTITVP 112 (162)
Q Consensus 105 GvL~I~lP 112 (162)
|+|+|++|
T Consensus 79 GvL~I~~P 86 (87)
T cd06481 79 GHLHIRAP 86 (87)
T ss_pred ceEEEEcC
Confidence 99999999
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=3.3e-20 Score=125.06 Aligned_cols=88 Identities=53% Similarity=0.829 Sum_probs=79.9
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEE
Q 044552 23 DWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASM 102 (162)
Q Consensus 23 di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~ 102 (162)
++.|+++.|.|.++|||+++++|+|++.++ .|.|+|++........ .+...++. .+.|.|+|.||.++|.+.++|.|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~-~l~I~g~~~~~~~~~~-~~~~~~~~-~~~f~r~~~LP~~vd~~~i~a~~ 77 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEE-NYLRRERS-YGSFSRSFRLPEDVDPDKIKASL 77 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCC-cEEEEEEe-CcEEEEEEECCCCcCHHHcEEEE
Confidence 478999999999999999999999999998 7999999986654443 66777888 99999999999999999999999
Q ss_pred eCCEEEEEEcCc
Q 044552 103 RDGVLTITVPIK 114 (162)
Q Consensus 103 ~nGvL~I~lP~K 114 (162)
.||+|+|++| |
T Consensus 78 ~~G~L~I~~p-k 88 (88)
T cd06464 78 ENGVLTITLP-K 88 (88)
T ss_pred eCCEEEEEEc-C
Confidence 9999999999 5
No 16
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.84 E-value=2.5e-20 Score=126.26 Aligned_cols=79 Identities=27% Similarity=0.431 Sum_probs=69.6
Q ss_pred EEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEE-e
Q 044552 25 KETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASM-R 103 (162)
Q Consensus 25 ~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~-~ 103 (162)
.++++.|.|+++||||++++|+|++.++ .|+|+|++.... +...+. .++|.|+|.||.+||.++|+|.| +
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~--~~~~~~------~r~F~R~~~LP~~Vd~~~v~A~~~~ 73 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRM--DEHGFI------SRSFTRQYQLPDGVEHKDLSAMLCH 73 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEcccc--CCCCEE------EEEEEEEEECCCCcchheEEEEEcC
Confidence 4678999999999999999999999999 799999987643 234454 55899999999999999999998 8
Q ss_pred CCEEEEEEc
Q 044552 104 DGVLTITVP 112 (162)
Q Consensus 104 nGvL~I~lP 112 (162)
||+|+|+.|
T Consensus 74 dGvL~I~~~ 82 (83)
T cd06477 74 DGILVVETK 82 (83)
T ss_pred CCEEEEEec
Confidence 999999986
No 17
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.82 E-value=6.1e-20 Score=124.15 Aligned_cols=77 Identities=27% Similarity=0.557 Sum_probs=68.2
Q ss_pred CCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEeC-CE
Q 044552 28 PHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRD-GV 106 (162)
Q Consensus 28 ~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~n-Gv 106 (162)
++.|.|.++||||++++|+|++.++ .|+|+|++..... ...+. .+.|.|+|.||.+||.+.++|.|.| |+
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~-~L~I~g~~~~~~~--~~~~~------~~~f~r~~~LP~~vd~~~i~A~~~~~Gv 76 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDN-KLVVEGKHEERED--EHGYV------SREFTRRYQLPEGVDPDSVTSSLSSDGV 76 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECC-EEEEEEEEeeecc--CCCEE------EEEEEEEEECCCCCChHHeEEEeCCCcE
Confidence 3699999999999999999999998 7999999876432 23344 7899999999999999999999998 99
Q ss_pred EEEEEcCc
Q 044552 107 LTITVPIK 114 (162)
Q Consensus 107 L~I~lP~K 114 (162)
|+|++| |
T Consensus 77 L~I~~P-k 83 (83)
T cd06526 77 LTIEAP-K 83 (83)
T ss_pred EEEEec-C
Confidence 999999 6
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.82 E-value=1e-19 Score=124.24 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=68.9
Q ss_pred cCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEeCC-
Q 044552 27 TPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG- 105 (162)
Q Consensus 27 ~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~nG- 105 (162)
.++.|+|.++|||+++++|+|++.++ .|+|+|++....+.... .++. +++|.|+|.||.+||.++|+|+|+||
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~~----~er~-~g~F~R~f~LP~~Vd~d~i~A~~~~~~ 79 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLGS----KKYS-YMNICKEFSLPPGVDEKDVTYSYGLGS 79 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCCc----cEEE-EEEEEEEEECCCCcChHHcEEEEcCCC
Confidence 46889999999999999999999998 79999998765432221 2445 89999999999999999999999876
Q ss_pred EEEEEEc
Q 044552 106 VLTITVP 112 (162)
Q Consensus 106 vL~I~lP 112 (162)
+|+|.-|
T Consensus 80 ~l~i~~~ 86 (87)
T cd06482 80 VVKIETP 86 (87)
T ss_pred EEEEeeC
Confidence 9999887
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.75 E-value=1.1e-17 Score=115.11 Aligned_cols=80 Identities=19% Similarity=0.375 Sum_probs=71.3
Q ss_pred EEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEe
Q 044552 24 WKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMR 103 (162)
Q Consensus 24 i~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~ 103 (162)
+..+++.|.|.+++.||.++||+|++.++ .|+|+|++..... ...+. .++|.|+|.||.+||.+.|+|.|.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~-~L~V~Gkh~~~~~--e~g~~------~r~F~R~~~LP~~Vd~~~v~s~l~ 80 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKDG-FVEVSGKHEEQQK--EGGIV------SKNFTKKIQLPPEVDPVTVFASLS 80 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEECC-EEEEEEEECcccC--CCCEE------EEEEEEEEECCCCCCchhEEEEeC
Confidence 45678899999999999999999999999 7999999986542 23465 679999999999999999999997
Q ss_pred -CCEEEEEEc
Q 044552 104 -DGVLTITVP 112 (162)
Q Consensus 104 -nGvL~I~lP 112 (162)
||+|+|.+|
T Consensus 81 ~dGvL~IeaP 90 (91)
T cd06480 81 PEGLLIIEAP 90 (91)
T ss_pred CCCeEEEEcC
Confidence 999999998
No 20
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.8e-17 Score=126.48 Aligned_cols=100 Identities=50% Similarity=0.860 Sum_probs=90.2
Q ss_pred CCceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccC--CCCcEEEEEcCcccEEEEEEECCCCccc
Q 044552 18 IDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPED--KGDKWHCRERPHGGSFTRQFRLPDDVKV 95 (162)
Q Consensus 18 ~~p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~--~~~~~~~~e~~~~~~f~r~~~LP~~vd~ 95 (162)
..+.++|.++++.|.+.++|||+.+++++|.++++++|.|+|++..+.+. ....|+..|+. .+.|.+.|.||++++.
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~-~g~F~r~~~lPenv~~ 161 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERK-LGKFKRRFELPENVDV 161 (196)
T ss_pred ccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhc-ccceEeeecCCccccH
Confidence 56778899999999999999999999999999988689999999876554 55668888898 9999999999999999
Q ss_pred CceEEEEeCCEEEEEEcCcCCchh
Q 044552 96 DEIRASMRDGVLTITVPIKDDELT 119 (162)
Q Consensus 96 ~~i~A~~~nGvL~I~lP~K~~~~~ 119 (162)
+.|+|.|+||+|+|++| |.....
T Consensus 162 d~ikA~~~nGVL~Vvvp-K~~~~~ 184 (196)
T KOG0710|consen 162 DEIKAEMENGVLTVVVP-KLEPLL 184 (196)
T ss_pred HHHHHHhhCCeEEEEEe-cccccc
Confidence 99999999999999999 888443
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.4e-15 Score=113.85 Aligned_cols=104 Identities=21% Similarity=0.401 Sum_probs=86.2
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceE
Q 044552 20 TQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIR 99 (162)
Q Consensus 20 p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~ 99 (162)
...++..+.+.|.|.+|+..|.+++|+|++.|+ .|.|.|++...+ +...+. .++|.|.|.||.+||++.|+
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~-~l~V~gkHeer~--d~~G~v------~R~F~R~y~LP~~vdp~~V~ 133 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDN-TLEVEGKHEEKE--DEHGYV------SRSFVRKYLLPEDVDPTSVT 133 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCC-EEEEEeeecccc--CCCCeE------EEEEEEEecCCCCCChhheE
Confidence 456788999999999999999999999999999 899999997654 444566 77999999999999999999
Q ss_pred EEE-eCCEEEEEEcCcCCchhhccCcccccCCceeEEEEecCCCC
Q 044552 100 ASM-RDGVLTITVPIKDDELTKKKNSKHKKTTSSVSVEISGGDGN 143 (162)
Q Consensus 100 A~~-~nGvL~I~lP~K~~~~~~~~~~~~~~~~~~~~I~i~~~~~~ 143 (162)
+.+ .||+|+|..| |.+.... ..+ .|+|+.....
T Consensus 134 S~LS~dGvLtI~ap-~~~~~~~--~er--------~ipI~~~~~~ 167 (173)
T KOG3591|consen 134 STLSSDGVLTIEAP-KPPPKQD--NER--------SIPIEQVGPS 167 (173)
T ss_pred EeeCCCceEEEEcc-CCCCcCc--cce--------EEeEeecCcc
Confidence 999 5899999999 7773322 222 5888765443
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.56 E-value=4.5e-14 Score=91.82 Aligned_cols=80 Identities=48% Similarity=0.851 Sum_probs=70.1
Q ss_pred EEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEe
Q 044552 24 WKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMR 103 (162)
Q Consensus 24 i~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~ 103 (162)
|+++++.|.|++++||+.++++.|.++++ .|.|+|....... .+.. .+.|.+.+.||..++++.++|.+.
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~-~l~v~~~~~~~~~--------~~~~-~~~~~~~~~L~~~i~~~~~~~~~~ 70 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDN-VLTISGKREEEEE--------RERS-YGEFERSFELPEDVDPEKSKASLE 70 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcCCCc--------ceEe-eeeEEEEEECCCCcCHHHCEEEEE
Confidence 56888999999999999999999999998 7999999864432 1122 678999999999999999999999
Q ss_pred CCEEEEEEcCc
Q 044552 104 DGVLTITVPIK 114 (162)
Q Consensus 104 nGvL~I~lP~K 114 (162)
+|+|+|++| |
T Consensus 71 ~~~l~i~l~-K 80 (80)
T cd00298 71 NGVLEITLP-K 80 (80)
T ss_pred CCEEEEEEc-C
Confidence 999999999 6
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.30 E-value=2.5e-11 Score=80.40 Aligned_cols=70 Identities=19% Similarity=0.353 Sum_probs=63.8
Q ss_pred EEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEe
Q 044552 24 WKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMR 103 (162)
Q Consensus 24 i~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~ 103 (162)
|+++++.+.|++++||+.+++++|.++++ .|.|++ ..|.+.+.||..||++..+|.+.
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-~l~i~~---------------------~~~~~~~~l~~~I~~e~~~~~~~ 58 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-YLKVNF---------------------PPYLFELDLAAPIDDEKSSAKIG 58 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-EEEEcC---------------------CCEEEEEeCcccccccccEEEEe
Confidence 46889999999999999999999999998 699986 13788899999999999999999
Q ss_pred CCEEEEEEcCcCC
Q 044552 104 DGVLTITVPIKDD 116 (162)
Q Consensus 104 nGvL~I~lP~K~~ 116 (162)
+|.|.|+|| |.+
T Consensus 59 ~~~l~i~L~-K~~ 70 (78)
T cd06469 59 NGVLVFTLV-KKE 70 (78)
T ss_pred CCEEEEEEE-eCC
Confidence 999999999 865
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.05 E-value=2.2e-09 Score=70.93 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=66.5
Q ss_pred EEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEe
Q 044552 24 WKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMR 103 (162)
Q Consensus 24 i~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~ 103 (162)
|.++++.+.|.+.+||..++++.|.+.++ .|.|++.... ...|...+.|+..|+++...+.+.
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~-~l~i~~~~~~----------------~~~~~~~~~L~~~I~~~~s~~~~~ 63 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPK-SLTVSVKGGG----------------GKEYLLEGELFGPIDPEESKWTVE 63 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecC-EEEEEeeCCC----------------CCceEEeeEccCccchhhcEEEEe
Confidence 46789999999999999999999999998 6999987430 346788899999999999999999
Q ss_pred CCEEEEEEcCcCC
Q 044552 104 DGVLTITVPIKDD 116 (162)
Q Consensus 104 nGvL~I~lP~K~~ 116 (162)
+|.|.|+|+ |..
T Consensus 64 ~~~l~i~L~-K~~ 75 (84)
T cd06463 64 DRKIEITLK-KKE 75 (84)
T ss_pred CCEEEEEEE-ECC
Confidence 999999999 766
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.04 E-value=2.4e-09 Score=81.46 Aligned_cols=78 Identities=21% Similarity=0.409 Sum_probs=62.5
Q ss_pred CCceeeEEEcCC-eEEEEEEcCCCCCCC-EEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCccc
Q 044552 18 IDTQMDWKETPH-AHVFEIDLPGLAKED-VTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKV 95 (162)
Q Consensus 18 ~~p~~di~e~~~-~~~i~~~lPG~~~ed-i~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~ 95 (162)
..+.+++.+.++ .++|.++|||++.++ |+|.+..+ .+.|.... ...+.+++.||.. +.
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d-~~~L~i~~------------------~~~~~krv~L~~~-~~ 149 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDD-EGALTIRV------------------GEKYLKRVALPWP-DP 149 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecC-CceEEEec------------------CCceEeeEecCCC-cc
Confidence 467889999887 699999999999888 99999954 34444332 2346789999977 68
Q ss_pred CceEEEEeCCEEEEEEcCcCC
Q 044552 96 DEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 96 ~~i~A~~~nGvL~I~lP~K~~ 116 (162)
+.++|.|.||||+|+|- +.+
T Consensus 150 e~~~~t~nNgILEIri~-~~~ 169 (177)
T PF05455_consen 150 EITSATFNNGILEIRIR-RTE 169 (177)
T ss_pred ceeeEEEeCceEEEEEe-ecC
Confidence 99999999999999998 555
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.84 E-value=2.1e-08 Score=66.97 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=67.1
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEE
Q 044552 23 DWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASM 102 (162)
Q Consensus 23 di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~ 102 (162)
||+++++.+.|.+.+||+.++++.|.+.++ .|.|++... . ...|...+.|+..|+++..++.+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~-~l~i~~~~~------~----------~~~~~~~~~L~~~I~~~~s~~~~ 63 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQ-SLSVSIILP------G----------GSEYQLELDLFGPIDPEQSKVSV 63 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecC-EEEEEEECC------C----------CCeEEEecccccccCchhcEEEE
Confidence 688999999999999999999999999998 699987642 0 33578889999999999999999
Q ss_pred eCCEEEEEEcCcCC
Q 044552 103 RDGVLTITVPIKDD 116 (162)
Q Consensus 103 ~nGvL~I~lP~K~~ 116 (162)
.+|.|.|+|. |..
T Consensus 64 ~~~~vei~L~-K~~ 76 (84)
T cd06466 64 LPTKVEITLK-KAE 76 (84)
T ss_pred eCeEEEEEEE-cCC
Confidence 9999999999 766
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.67 E-value=9.5e-07 Score=57.68 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=64.7
Q ss_pred ceeeEEEcCCeEEEEEEcCCC--CCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCc
Q 044552 20 TQMDWKETPHAHVFEIDLPGL--AKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDE 97 (162)
Q Consensus 20 p~~di~e~~~~~~i~~~lPG~--~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~ 97 (162)
|.++|.++++...|.+.+++. +++++.|.+.++ .|.|+..... ...|...+.|...|+++.
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~-~l~v~~~~~~----------------~~~~~~~~~L~~~I~~~~ 63 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDT-SLSVSIKSGD----------------GKEYLLEGELFGEIDPDE 63 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETT-EEEEEEEETT----------------SCEEEEEEEBSS-BECCC
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEee-EEEEEEEccC----------------CceEEEEEEEeeeEcchh
Confidence 679999999999999999665 499999999999 6999966431 135788889999999999
Q ss_pred eEEEEeCCEEEEEEcCc
Q 044552 98 IRASMRDGVLTITVPIK 114 (162)
Q Consensus 98 i~A~~~nGvL~I~lP~K 114 (162)
.+..+.++.|.|+|. |
T Consensus 64 s~~~~~~~~i~i~L~-K 79 (79)
T PF04969_consen 64 STWKVKDNKIEITLK-K 79 (79)
T ss_dssp EEEEEETTEEEEEEE-B
T ss_pred cEEEEECCEEEEEEE-C
Confidence 999999999999998 5
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.40 E-value=5.8e-06 Score=58.14 Aligned_cols=78 Identities=14% Similarity=0.339 Sum_probs=66.9
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceE
Q 044552 20 TQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIR 99 (162)
Q Consensus 20 p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~ 99 (162)
|+++|+++.+...|.+.+||. +++.|.+..+ .|.|++.... + ...|.-.+.|...|+++..+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~-~l~v~~~~~~-----~----------~~~y~~~~~L~~~I~pe~s~ 62 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPT-SLSFKAKGGG-----G----------GKKYEFDLEFYKEIDPEESK 62 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECC-EEEEEEEcCC-----C----------CeeEEEEeEhhhhccccccE
Confidence 678999999999999999998 8899999998 6999985321 0 23467778999999999999
Q ss_pred EEEeCCEEEEEEcCcCC
Q 044552 100 ASMRDGVLTITVPIKDD 116 (162)
Q Consensus 100 A~~~nGvL~I~lP~K~~ 116 (162)
..+.++.|.|+|. |..
T Consensus 63 ~~v~~~kveI~L~-K~~ 78 (108)
T cd06465 63 YKVTGRQIEFVLR-KKE 78 (108)
T ss_pred EEecCCeEEEEEE-ECC
Confidence 9999999999999 866
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.20 E-value=9.8e-06 Score=66.94 Aligned_cols=65 Identities=34% Similarity=0.573 Sum_probs=57.1
Q ss_pred CCeEEEEEEcCCC-CCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEe--C
Q 044552 28 PHAHVFEIDLPGL-AKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMR--D 104 (162)
Q Consensus 28 ~~~~~i~~~lPG~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~--n 104 (162)
.+.++|+++|||+ +..+|.|.|.+. .|.|.... ..|.-.+.||..||.+..+|.|+ .
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~-~l~l~~~~-------------------~~y~L~l~LP~~V~~~~~~Akf~~~~ 319 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSED-RLSLSSPK-------------------PKYRLDLPLPYPVDEDNGKAKFDKKT 319 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCC-EEEEEeCC-------------------CceEEEccCCCcccCCCceEEEccCC
Confidence 6889999999999 779999999998 59888442 24778899999999999999996 5
Q ss_pred CEEEEEEc
Q 044552 105 GVLTITVP 112 (162)
Q Consensus 105 GvL~I~lP 112 (162)
+.|+|+||
T Consensus 320 ~~L~vtlp 327 (328)
T PF08190_consen 320 KTLTVTLP 327 (328)
T ss_pred CEEEEEEE
Confidence 89999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.17 E-value=1.9e-05 Score=52.92 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=64.6
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEE
Q 044552 23 DWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASM 102 (162)
Q Consensus 23 di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~ 102 (162)
||+++++...|++.++|+.++++.|.+.++ .|.+++.... ...|.-.+.|...|+++.-+...
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~-~l~~~~~~~~----------------~~~y~~~~~L~~~I~p~~s~~~v 63 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKR-ELSATVKLPS----------------GNDYSLKLHLLHPIVPEQSSYKI 63 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCC-EEEEEEECCC----------------CCcEEEeeecCceecchhcEEEE
Confidence 688999999999999999999999999998 6999976421 12466778999999999888888
Q ss_pred eCCEEEEEEcCcCC
Q 044552 103 RDGVLTITVPIKDD 116 (162)
Q Consensus 103 ~nGvL~I~lP~K~~ 116 (162)
..+-+.|.|. |.+
T Consensus 64 ~~~kiei~L~-K~~ 76 (84)
T cd06489 64 LSTKIEIKLK-KTE 76 (84)
T ss_pred eCcEEEEEEE-cCC
Confidence 8889999999 765
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.07 E-value=5.3e-05 Score=50.54 Aligned_cols=74 Identities=28% Similarity=0.415 Sum_probs=60.8
Q ss_pred eeEEEcCCeEEEEEEcC-CCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEE
Q 044552 22 MDWKETPHAHVFEIDLP-GLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRA 100 (162)
Q Consensus 22 ~di~e~~~~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A 100 (162)
+.|.++++...|.+.+| ++.++++.|.+.++ .|.|+... . .+.-.-.|...||++....
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~~-------~------------~~~l~~~L~~~I~~~~s~w 60 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVGVKG-------G------------EPLLDGELYAKVKVDESTW 60 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEEECC-------C------------CceEcCcccCceeEcCCEE
Confidence 57899999999999998 78999999999998 59988541 0 1122235888999999888
Q ss_pred EEeC-CEEEEEEcCcCC
Q 044552 101 SMRD-GVLTITVPIKDD 116 (162)
Q Consensus 101 ~~~n-GvL~I~lP~K~~ 116 (162)
.+.+ ..|.|+|+ |.+
T Consensus 61 ~~~~~~~v~i~L~-K~~ 76 (85)
T cd06467 61 TLEDGKLLEITLE-KRN 76 (85)
T ss_pred EEeCCCEEEEEEE-ECC
Confidence 8999 99999999 876
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=98.04 E-value=9e-05 Score=50.17 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=66.3
Q ss_pred eeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEE
Q 044552 21 QMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRA 100 (162)
Q Consensus 21 ~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A 100 (162)
++||+++++...|.+.+.|+.++++.+.++++ .|.++..... ...|.-.+.|-..|+++..+.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~-~l~v~~~~~~----------------~~~y~~~l~L~~~I~~~~s~~ 64 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANST-VLTIHIVFEG----------------NKEFQLDIELWGVIDVEKSSV 64 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCC-EEEEEEECCC----------------CceEEEEeeccceEChhHcEE
Confidence 47999999999999999999999999999987 6888765421 124677789999999999888
Q ss_pred EEeCCEEEEEEcCcCC
Q 044552 101 SMRDGVLTITVPIKDD 116 (162)
Q Consensus 101 ~~~nGvL~I~lP~K~~ 116 (162)
....+-+.|+|. |.+
T Consensus 65 ~v~~~kvei~L~-K~~ 79 (87)
T cd06488 65 NMLPTKVEIKLR-KAE 79 (87)
T ss_pred EecCcEEEEEEE-eCC
Confidence 888999999999 776
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=98.00 E-value=0.00014 Score=49.28 Aligned_cols=79 Identities=14% Similarity=0.319 Sum_probs=64.9
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCC---CCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEE-CCCCccc
Q 044552 20 TQMDWKETPHAHVFEIDLPGLAK---EDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFR-LPDDVKV 95 (162)
Q Consensus 20 p~~di~e~~~~~~i~~~lPG~~~---edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~-LP~~vd~ 95 (162)
..++|+++++...|.+.+|+... +++.|.+..+ .|.|++... + ...|.-.+. |-..|++
T Consensus 2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~-~l~v~~~~~-----~-----------~~~~~~~~~~L~~~I~~ 64 (92)
T cd06468 2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTER-SFELKVHDL-----N-----------GKNYRFTINRLLKKIDP 64 (92)
T ss_pred ceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCC-EEEEEEECC-----C-----------CcEEEEEehHhhCccCc
Confidence 36899999999999999999976 9999999998 699987421 1 123444554 8899999
Q ss_pred CceEEEEeCCEEEEEEcCcCC
Q 044552 96 DEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 96 ~~i~A~~~nGvL~I~lP~K~~ 116 (162)
+..+..+..+-+.|+|. |.+
T Consensus 65 e~s~~~~~~~ki~i~L~-K~~ 84 (92)
T cd06468 65 EKSSFKVKTDRIVITLA-KKK 84 (92)
T ss_pred cccEEEEeCCEEEEEEE-eCC
Confidence 99999999999999999 776
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.89 E-value=0.00021 Score=48.04 Aligned_cols=74 Identities=19% Similarity=0.360 Sum_probs=58.8
Q ss_pred eeEEEcCCeEEEEEEcC-CCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEE
Q 044552 22 MDWKETPHAHVFEIDLP-GLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRA 100 (162)
Q Consensus 22 ~di~e~~~~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A 100 (162)
|+|+++.+...|.+.+| |+.+++++|++..+ .|.+.... . . .+ ..-.|...|+++.-.-
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~~--~-----~-----------~~-~~g~L~~~I~~d~Stw 60 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALKD--Q-----A-----------PL-LEGKLYSSIDHESSTW 60 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeCC--C-----C-----------eE-EeCcccCcccccCcEE
Confidence 57899999999999996 99999999999998 58886420 0 0 11 2337888999999777
Q ss_pred EEeCC-EEEEEEcCcCC
Q 044552 101 SMRDG-VLTITVPIKDD 116 (162)
Q Consensus 101 ~~~nG-vL~I~lP~K~~ 116 (162)
.+.+| .|.|.|. |.+
T Consensus 61 ~i~~~~~l~i~L~-K~~ 76 (85)
T cd06493 61 IIKENKSLEVSLI-KKD 76 (85)
T ss_pred EEeCCCEEEEEEE-ECC
Confidence 77776 7999999 766
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.57 E-value=0.0016 Score=44.87 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=62.0
Q ss_pred CCceeeEEEcCCeEEEEEEcC-CCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccC
Q 044552 18 IDTQMDWKETPHAHVFEIDLP-GLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVD 96 (162)
Q Consensus 18 ~~p~~di~e~~~~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~ 96 (162)
..+.|.|+++.+...|++.|| |+...++.|.+..+ .|.|...- ..+. .| .|...|+++
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~g--------~~~l------~G------~L~~~I~~d 62 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVKG--------QEVL------KG------KLFDSVVAD 62 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEECC--------EEEE------cC------cccCccCcc
Confidence 457899999999999999999 89999999999999 58887421 0111 22 578899999
Q ss_pred ceEEEEeCCE-EEEEEcCcCC
Q 044552 97 EIRASMRDGV-LTITVPIKDD 116 (162)
Q Consensus 97 ~i~A~~~nGv-L~I~lP~K~~ 116 (162)
.-.-.+++|- |.|.|. |..
T Consensus 63 estWtled~k~l~I~L~-K~~ 82 (93)
T cd06494 63 ECTWTLEDRKLIRIVLT-KSN 82 (93)
T ss_pred cCEEEEECCcEEEEEEE-eCC
Confidence 9888888875 899999 765
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.47 E-value=0.003 Score=44.47 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=61.9
Q ss_pred ceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceE
Q 044552 20 TQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIR 99 (162)
Q Consensus 20 p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~ 99 (162)
|.+++.+..+...|++.+|+ .++++|+++++ .|.++|.-. + ...|.-.+.|=..|+++.-+
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~-~l~f~~~~~-----~-----------g~~y~~~l~l~~~I~pe~Sk 62 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKS-KLTFSCLNG-----D-----------NVKIYNEIELYDRVDPNDSK 62 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecC-EEEEEEECC-----C-----------CcEEEEEEEeecccCcccCe
Confidence 78999999999999999999 58999999998 699998431 1 12355667888899999877
Q ss_pred EEEeCCEEEEEEcCcCC
Q 044552 100 ASMRDGVLTITVPIKDD 116 (162)
Q Consensus 100 A~~~nGvL~I~lP~K~~ 116 (162)
.....--+.|.|. |.+
T Consensus 63 ~~v~~r~ve~~L~-K~~ 78 (106)
T cd00237 63 HKRTDRSILCCLR-KGK 78 (106)
T ss_pred EEeCCceEEEEEE-eCC
Confidence 7766668888998 776
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.19 E-value=0.0026 Score=53.61 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=67.4
Q ss_pred CceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCce
Q 044552 19 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEI 98 (162)
Q Consensus 19 ~p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i 98 (162)
.+++||+++++...|.|.+.|+.++++.|.+.++ .|.|+..... ...|...+.|-..|+++..
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~~~~~----------------~~~y~~~~~L~~~I~p~~s 218 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVIEVPG----------------EDAYHLQPRLFGKIIPDKC 218 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEEecCC----------------Ccceeeccccccccccccc
Confidence 4678999999999999999999999999999998 6999865421 1235556788899999998
Q ss_pred EEEEeCCEEEEEEcCcCC
Q 044552 99 RASMRDGVLTITVPIKDD 116 (162)
Q Consensus 99 ~A~~~nGvL~I~lP~K~~ 116 (162)
+......-+.|+|. |.+
T Consensus 219 ~~~v~~~Kiei~l~-K~~ 235 (356)
T PLN03088 219 KYEVLSTKIEIRLA-KAE 235 (356)
T ss_pred EEEEecceEEEEEe-cCC
Confidence 88888889999998 776
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.04 E-value=0.0029 Score=48.50 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=66.0
Q ss_pred CceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCce
Q 044552 19 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEI 98 (162)
Q Consensus 19 ~p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i 98 (162)
.+++||++++...+|.+-.+++.+++++|.+..+ .|.|..+.+. ...|.-...|-..|.++..
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~-~l~~~~~~~~----------------g~~~~l~~~L~~~I~pe~~ 65 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISEN-TLSIVIQLPS----------------GSEYNLQLKLYHEIIPEKS 65 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecc-eEEEEEecCC----------------chhhhhhHHhcccccccce
Confidence 4678999999999999999999999999999988 6888866542 2235555668888999987
Q ss_pred EEEEeCCEEEEEEcCcCC
Q 044552 99 RASMRDGVLTITVPIKDD 116 (162)
Q Consensus 99 ~A~~~nGvL~I~lP~K~~ 116 (162)
+-..----+.|+|+ |.+
T Consensus 66 s~k~~stKVEI~L~-K~~ 82 (196)
T KOG1309|consen 66 SFKVFSTKVEITLA-KAE 82 (196)
T ss_pred eeEeeeeeEEEEec-ccc
Confidence 77777889999999 855
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.93 E-value=0.021 Score=38.54 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=55.2
Q ss_pred eeEEEcCCeEEEEEEcCCC--CCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceE
Q 044552 22 MDWKETPHAHVFEIDLPGL--AKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIR 99 (162)
Q Consensus 22 ~di~e~~~~~~i~~~lPG~--~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~ 99 (162)
+||+++++...|.+...+. ...++.+....+ .|.|+-... ...|...+.|=..|+++. +
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~-~l~v~~~~~-----------------~~~~~~~~~L~~~I~~~~-~ 61 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQR-ELRVEIILG-----------------DKSYLLHLDLSNEVQWPC-E 61 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCC-EEEEEEECC-----------------CceEEEeeeccccCCCCc-E
Confidence 5899999999999999864 444555555555 688875432 113677788888998875 5
Q ss_pred EEEe--CCEEEEEEcCcCC
Q 044552 100 ASMR--DGVLTITVPIKDD 116 (162)
Q Consensus 100 A~~~--nGvL~I~lP~K~~ 116 (162)
..+. -|-+.|+|. |.+
T Consensus 62 ~~~~~~~~KVEI~L~-K~e 79 (87)
T cd06490 62 VRISTETGKIELVLK-KKE 79 (87)
T ss_pred EEEcccCceEEEEEE-cCC
Confidence 5555 789999999 766
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.44 E-value=0.05 Score=36.78 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=56.1
Q ss_pred eeEEEcCCeEEEEEEcC-C--CCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCce
Q 044552 22 MDWKETPHAHVFEIDLP-G--LAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEI 98 (162)
Q Consensus 22 ~di~e~~~~~~i~~~lP-G--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i 98 (162)
|.+.++.+...|++.|| + +...+++|.+..+ .|.|.-+- .. .--.=.|...|+.+.-
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~g--------~~-----------~~i~G~L~~~V~~des 60 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLKG--------QP-----------PIIDGELYNEVKVEES 60 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEECC--------Cc-----------eEEeCcccCccccccc
Confidence 45788899999999997 3 7899999999998 58886321 00 1122256788999888
Q ss_pred EEEEeCC-EEEEEEcCcCC
Q 044552 99 RASMRDG-VLTITVPIKDD 116 (162)
Q Consensus 99 ~A~~~nG-vL~I~lP~K~~ 116 (162)
.-.+++| .|.|+|- |..
T Consensus 61 ~Wtled~~~l~i~L~-K~~ 78 (87)
T cd06492 61 SWLIEDGKVVTVNLE-KIN 78 (87)
T ss_pred EEEEeCCCEEEEEEE-ECC
Confidence 8888886 8999998 765
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.43 E-value=0.33 Score=33.92 Aligned_cols=80 Identities=10% Similarity=0.260 Sum_probs=60.2
Q ss_pred CceeeEEEcCCeEEEEEEcC-CC-CCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccC
Q 044552 19 DTQMDWKETPHAHVFEIDLP-GL-AKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVD 96 (162)
Q Consensus 19 ~p~~di~e~~~~~~i~~~lP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~ 96 (162)
...|.|.++-+...|++.|| |. ...+|.|.+... .|.|.-.... ....+. .| .|+..|+.+
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~-~l~v~~~~~~----~~~~~i------~G------~L~~~V~~d 66 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSS-SIRVSVRDGG----GEKVLM------EG------EFTHKINTE 66 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcC-EEEEEEecCC----CCceEE------eC------cccCcccCc
Confidence 46789999999999999999 54 578999999998 5888754100 001122 22 578889999
Q ss_pred ceEEEEeCC-EEEEEEcCcCC
Q 044552 97 EIRASMRDG-VLTITVPIKDD 116 (162)
Q Consensus 97 ~i~A~~~nG-vL~I~lP~K~~ 116 (162)
.-.-.+++| .|.|+|- |..
T Consensus 67 es~Wtled~~~l~I~L~-K~~ 86 (102)
T cd06495 67 NSLWSLEPGKCVLLSLS-KCS 86 (102)
T ss_pred cceEEEeCCCEEEEEEE-ECC
Confidence 888888886 5899998 764
No 42
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.89 Score=34.78 Aligned_cols=79 Identities=9% Similarity=0.231 Sum_probs=60.4
Q ss_pred CceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCce
Q 044552 19 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEI 98 (162)
Q Consensus 19 ~p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i 98 (162)
.|.+-|.+..+.+.+++.|+.. .+..|.+++. .|+++|+-... .-.|...|.|=..||+++.
T Consensus 7 ~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~~-~l~fs~k~~~d---------------~~~~~~~ief~~eIdpe~s 68 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEPS-KLTFSCKSGAD---------------NHKYENEIEFFDEIDPEKS 68 (180)
T ss_pred CCcchhhhhcCeEEEEEEeccC--ccceeecccc-EEEEEeccCCC---------------ceeeEEeeehhhhcCHhhc
Confidence 5788899999999999999865 4566777777 69999986411 2346777889999999998
Q ss_pred EEEEeCCEEEEEEcCcCC
Q 044552 99 RASMRDGVLTITVPIKDD 116 (162)
Q Consensus 99 ~A~~~nGvL~I~lP~K~~ 116 (162)
+.+-. +-+...+++|.+
T Consensus 69 k~k~~-~r~if~i~~K~e 85 (180)
T KOG3158|consen 69 KHKRT-SRSIFCILRKKE 85 (180)
T ss_pred ccccc-ceEEEEEEEccc
Confidence 87776 777777774555
No 43
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=86.63 E-value=9.2 Score=27.83 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=53.0
Q ss_pred CCceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCc
Q 044552 18 IDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDE 97 (162)
Q Consensus 18 ~~p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~ 97 (162)
....+.|...++ ..+++.. ..+.+++..+++ .|.|+.+...... ...|.... . ...-.-.+.||.....++
T Consensus 64 ~~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~-~L~I~~~~~~~~~--~~~~~~~~-~-~~~~~i~I~lP~~~~l~~ 134 (166)
T PF13349_consen 64 DNGDVEIKPSDD-DKIKVEY---NGKKPEISVEGG-TLTIKSKDRESFF--FKGFNFNN-S-DNKSKITIYLPKDYKLDK 134 (166)
T ss_pred CceeEEEEEcCC-ccEEEEE---cCcEEEEEEcCC-EEEEEEecccccc--cceEEEcc-c-CCCcEEEEEECCCCceeE
Confidence 445566666554 4444444 212688888888 7999877221100 11221111 1 234577899999998889
Q ss_pred eEEEEeCCEEEEEEc
Q 044552 98 IRASMRDGVLTITVP 112 (162)
Q Consensus 98 i~A~~~nGvL~I~lP 112 (162)
|+....+|-+.|.=-
T Consensus 135 i~i~~~~G~i~i~~i 149 (166)
T PF13349_consen 135 IDIKTSSGDITIEDI 149 (166)
T ss_pred EEEEeccccEEEEcc
Confidence 999999998777544
No 44
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=86.36 E-value=0.9 Score=37.47 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=65.3
Q ss_pred CCceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCc
Q 044552 18 IDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDE 97 (162)
Q Consensus 18 ~~p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~ 97 (162)
....+++.++.....|-+.-|-+..++|++-+.+| +|.|+-+.+.. ..-|...+.|-..|+++.
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~N-TL~I~~q~~~~---------------~~~~~~~~~Ly~ev~P~~ 238 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGN-TLSISYQPRRL---------------RLWNDITISLYKEVYPDI 238 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecCC-cceeeeecccc---------------chHHHhhhhhhhhcCcch
Confidence 45677888999999999999999999999999998 89999664321 233566678888999998
Q ss_pred eEEEEeCCEEEEEEcCcCC
Q 044552 98 IRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 98 i~A~~~nGvL~I~lP~K~~ 116 (162)
..-....-.+.|+|. |.+
T Consensus 239 ~s~k~fsK~~e~~l~-KV~ 256 (368)
T COG5091 239 RSIKSFSKRVEVHLR-KVE 256 (368)
T ss_pred hhhhhcchhheehhh-hhh
Confidence 777766678888887 766
No 45
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=82.97 E-value=11 Score=28.99 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=58.4
Q ss_pred CCceeeEEEcCCeEEEEEEcC-CC-CCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCccc
Q 044552 18 IDTQMDWKETPHAHVFEIDLP-GL-AKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKV 95 (162)
Q Consensus 18 ~~p~~di~e~~~~~~i~~~lP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~ 95 (162)
..+.|.|.++=..+.|.+.|| |+ ...+|.+.+...+ |.|.-+-.. .+. .| .|...|+.
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~h-I~V~~kg~~-------~il------dG------~L~~~vk~ 76 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKH-IKVGLKGQP-------PIL------DG------ELSHSVKV 76 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeE-EEEecCCCC-------cee------cC------cccccccc
Confidence 568889999999999999998 88 7889999999874 777633211 122 22 35677888
Q ss_pred CceEEEEeCCEEEEEEcCcCC
Q 044552 96 DEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 96 ~~i~A~~~nGvL~I~lP~K~~ 116 (162)
+.-.-.+++|.+.|.+- ++.
T Consensus 77 des~WtiEd~k~i~i~l-~K~ 96 (179)
T KOG2265|consen 77 DESTWTIEDGKMIVILL-KKS 96 (179)
T ss_pred ccceEEecCCEEEEEEe-ecc
Confidence 98888999998877776 444
No 46
>PF14913 DPCD: DPCD protein family
Probab=82.56 E-value=18 Score=28.11 Aligned_cols=80 Identities=16% Similarity=0.288 Sum_probs=59.4
Q ss_pred CCceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECC-eEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCC----
Q 044552 18 IDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGD-RILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDD---- 92 (162)
Q Consensus 18 ~~p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~---- 92 (162)
+.|.+-=.++..+|.-++-===+.++-.+|.++++ +.++|+-+ ...|.+.|.+|+-
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTt-------------------NKKYyKk~~IPDl~R~~ 145 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTT-------------------NKKYYKKFSIPDLDRCG 145 (194)
T ss_pred CCCEEEEEcCccceEEEEccCCCCccceEEEEcCCCcEEEEECc-------------------CccceeEecCCcHHhhC
Confidence 56666667778888888754446788888888854 35777733 3457888999942
Q ss_pred --cccCceEEEEeCCEEEEEEcCcCCc
Q 044552 93 --VKVDEIRASMRDGVLTITVPIKDDE 117 (162)
Q Consensus 93 --vd~~~i~A~~~nGvL~I~lP~K~~~ 117 (162)
.+.+.++..+.|..|.|+.. |..+
T Consensus 146 l~l~~~~ls~~h~nNTLIIsYk-KP~~ 171 (194)
T PF14913_consen 146 LPLEQSALSFAHQNNTLIISYK-KPKE 171 (194)
T ss_pred CCcchhhceeeeecCeEEEEec-CcHH
Confidence 47788888889999999998 6654
No 47
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=79.58 E-value=11 Score=30.85 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=67.3
Q ss_pred CceeeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCce
Q 044552 19 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEI 98 (162)
Q Consensus 19 ~p~~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i 98 (162)
.-+.||.++++..+|.+.--|.-++.-.|..+.. .|.|.-..... ...|...+.|=.-|+++..
T Consensus 214 ~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~-~l~V~ivf~~g---------------na~fd~d~kLwgvvnve~s 277 (320)
T KOG1667|consen 214 KCRHDWHQTNGFVTINVYAKGALPETSNIEANGT-TLHVSIVFGFG---------------NASFDLDYKLWGVVNVEES 277 (320)
T ss_pred cchhhhhhcCCeEEEEEEeccCCcccceeeeCCe-EEEEEEEecCC---------------Cceeeccceeeeeechhhc
Confidence 3466899999999999999999998888888876 68888665321 4468888888888999999
Q ss_pred EEEEeCCEEEEEEcCcCC
Q 044552 99 RASMRDGVLTITVPIKDD 116 (162)
Q Consensus 99 ~A~~~nGvL~I~lP~K~~ 116 (162)
.+.+-.--+.|.|+ |.+
T Consensus 278 ~v~m~~tkVEIsl~-k~e 294 (320)
T KOG1667|consen 278 SVVMGETKVEISLK-KAE 294 (320)
T ss_pred eEEeecceEEEEEe-ccC
Confidence 99999999999999 766
No 48
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=75.06 E-value=7.8 Score=25.60 Aligned_cols=34 Identities=9% Similarity=0.211 Sum_probs=30.0
Q ss_pred ccEEEEEEECCCCcccCceEEEEeCCEEEEEEcCcC
Q 044552 80 GGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKD 115 (162)
Q Consensus 80 ~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~ 115 (162)
...|.-.+.|| +++++.|+..+.+|.|+|..- +.
T Consensus 6 ~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~-~~ 39 (83)
T cd06478 6 KDRFSVNLDVK-HFSPEELSVKVLGDFVEIHGK-HE 39 (83)
T ss_pred CceEEEEEECC-CCCHHHeEEEEECCEEEEEEE-Ec
Confidence 45788899999 899999999999999999996 54
No 49
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=74.59 E-value=6 Score=26.30 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=30.1
Q ss_pred ccEEEEEEECCCCcccCceEEEEeCCEEEEEEcCcCC
Q 044552 80 GGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 80 ~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~~ 116 (162)
...|.-.+.|| +++++.|+..+.||.|+|..- +..
T Consensus 6 ~d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~-~~~ 40 (83)
T cd06476 6 DDKYQVFLDVC-HFTPDEITVRTVDNLLEVSAR-HPQ 40 (83)
T ss_pred CCeEEEEEEcC-CCCHHHeEEEEECCEEEEEEE-Ecc
Confidence 34688899999 889999999999999999997 543
No 50
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=74.50 E-value=7.6 Score=26.16 Aligned_cols=34 Identities=9% Similarity=0.371 Sum_probs=29.8
Q ss_pred cEEEEEEECCCCcccCceEEEEeCCEEEEEEcCcCC
Q 044552 81 GSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 81 ~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~~ 116 (162)
..|.-...|| .++.+.|+..+.+|.|+|..- +..
T Consensus 8 ~~~~v~adlP-G~~kedI~V~v~~~~L~I~ge-r~~ 41 (87)
T cd06482 8 SNVLASVDVC-GFEPDQVKVKVKDGKVQVSAE-REN 41 (87)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEE-Eec
Confidence 4688889999 899999999999999999998 544
No 51
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=74.30 E-value=6.4 Score=26.25 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=30.4
Q ss_pred ccEEEEEEECCCCcccCceEEEEeCCEEEEEEcCcCC
Q 044552 80 GGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 80 ~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~~ 116 (162)
...|.-.+.|| +++++.|+-.+++|.|+|+.- +..
T Consensus 6 ~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge-~~~ 40 (83)
T cd06477 6 KPMFQILLDVV-QFRPEDIIIQVFEGWLLIKGQ-HGV 40 (83)
T ss_pred CceEEEEEEcC-CCCHHHeEEEEECCEEEEEEE-Ecc
Confidence 34688889999 899999999999999999997 544
No 52
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=74.03 E-value=7.5 Score=25.94 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=30.2
Q ss_pred ccEEEEEEECCCCcccCceEEEEeCCEEEEEEcCcCC
Q 044552 80 GGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 80 ~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~~ 116 (162)
...|.-.+.|| +++++.|+..+.+|.|+|..- +.+
T Consensus 9 ~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~-~~~ 43 (86)
T cd06497 9 RDKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGK-HSE 43 (86)
T ss_pred CCEEEEEEECC-CCCHHHeEEEEECCEEEEEEE-Ecc
Confidence 45688899999 899999999999999999987 543
No 53
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=72.11 E-value=9.5 Score=24.42 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=28.9
Q ss_pred EcCCeEEEEEEcC-CCCCCCEEEEEECCeEEEEEEE
Q 044552 26 ETPHAHVFEIDLP-GLAKEDVTLQVHGDRILHISAE 60 (162)
Q Consensus 26 e~~~~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~ 60 (162)
.....|.-.+.|| +++.+.++..+.+| .|.|...
T Consensus 53 ~~~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~~p 87 (88)
T cd06464 53 RSYGSFSRSFRLPEDVDPDKIKASLENG-VLTITLP 87 (88)
T ss_pred EeCcEEEEEEECCCCcCHHHcEEEEeCC-EEEEEEc
Confidence 3367899999999 78999999999998 8999853
No 54
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=72.06 E-value=6.5 Score=26.20 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=26.1
Q ss_pred CeEEEEEEcCCCCCCCEEEEEECCeEEEEEE
Q 044552 29 HAHVFEIDLPGLAKEDVTLQVHGDRILHISA 59 (162)
Q Consensus 29 ~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g 59 (162)
+.|.-.+.||.+..+.++-++.+| .|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 567777899999999999999998 899974
No 55
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=69.96 E-value=10 Score=25.33 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=27.5
Q ss_pred CCeEEEEEEcC-CCCCCCEEEEEECCeEEEEEE
Q 044552 28 PHAHVFEIDLP-GLAKEDVTLQVHGDRILHISA 59 (162)
Q Consensus 28 ~~~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g 59 (162)
...|.-++.|| +++.+.++-.+.+| .|.|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 46889999999 78999999999998 899974
No 56
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=68.77 E-value=8.1 Score=25.27 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=27.1
Q ss_pred CeEEEEEEcC-CCCCCCEEEEEEC-CeEEEEEEE
Q 044552 29 HAHVFEIDLP-GLAKEDVTLQVHG-DRILHISAE 60 (162)
Q Consensus 29 ~~~~i~~~lP-G~~~edi~V~v~~-~~~L~I~g~ 60 (162)
..|.-++.|| +++.+.++-.+.+ | .|+|++.
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~G-vL~I~~P 82 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDG-VLTIEAP 82 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCc-EEEEEec
Confidence 4788899999 7899999999998 6 8999863
No 57
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=68.21 E-value=11 Score=24.98 Aligned_cols=32 Identities=9% Similarity=0.304 Sum_probs=28.8
Q ss_pred ccEEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 80 GGSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 80 ~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
...|.-.+.|| .++++.|+..+++|.|+|..-
T Consensus 7 ~~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ge 38 (81)
T cd06479 7 GDTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAE 38 (81)
T ss_pred CCeEEEEEECC-CCCHHHeEEEEECCEEEEEEE
Confidence 34688889999 899999999999999999987
No 58
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=67.87 E-value=13 Score=24.77 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=30.3
Q ss_pred ccEEEEEEECCCCcccCceEEEEeCCEEEEEEcCcCC
Q 044552 80 GGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 80 ~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~~ 116 (162)
...|.-.+.|| +++++.|+..+.++.|+|+.- +..
T Consensus 9 ~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~-~~~ 43 (86)
T cd06475 9 ADRWKVSLDVN-HFAPEELVVKTKDGVVEITGK-HEE 43 (86)
T ss_pred CCeEEEEEECC-CCCHHHEEEEEECCEEEEEEE-ECc
Confidence 34688899999 899999999999999999997 543
No 59
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=67.64 E-value=13 Score=24.73 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=28.6
Q ss_pred ccEEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 80 GGSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 80 ~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
...|.-.+.|| +++++.|+..+.++.|+|..-
T Consensus 6 ~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~ 37 (84)
T cd06498 6 KDKFSVNLDVK-HFSPEELKVKVLGDFIEIHGK 37 (84)
T ss_pred CceEEEEEECC-CCCHHHeEEEEECCEEEEEEE
Confidence 34688889998 899999999999999999996
No 60
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=66.88 E-value=22 Score=22.26 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=33.4
Q ss_pred CceeeEE-EcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEe
Q 044552 19 DTQMDWK-ETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERK 62 (162)
Q Consensus 19 ~p~~di~-e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~ 62 (162)
..++.+. =..+.|.|++..||+..-.-.|.+..+....|....+
T Consensus 24 ~tp~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 24 TTPLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cCcceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 3444565 4468999999999999988888888665677776643
No 61
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=66.16 E-value=15 Score=24.46 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=29.9
Q ss_pred cEEEEEEECCCCcccCceEEEEeCCEEEEEEcCcCC
Q 044552 81 GSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 81 ~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~~ 116 (162)
..|.-.+.|| .++.+.|+..++++.|+|... +..
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~-~~~ 44 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGK-KAD 44 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEE-Ecc
Confidence 4788899999 689999999999999999998 444
No 62
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=66.04 E-value=15 Score=25.03 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=25.9
Q ss_pred CeEEEEEEcC-CCCCCCEEEEEE-CCeEEEEEE
Q 044552 29 HAHVFEIDLP-GLAKEDVTLQVH-GDRILHISA 59 (162)
Q Consensus 29 ~~~~i~~~lP-G~~~edi~V~v~-~~~~L~I~g 59 (162)
..|.=.+.|| +++.+.|+-.+. +| .|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEG-LLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCC-eEEEEc
Confidence 4577789999 899999999999 55 899986
No 63
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=65.63 E-value=19 Score=24.11 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=28.3
Q ss_pred ccEEEEEEECCCCcccCceEEEEeCCEEEEEEcCcC
Q 044552 80 GGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKD 115 (162)
Q Consensus 80 ~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~ 115 (162)
...|.-.+.|| +++.+.|+-.+.++.|.|+.- +.
T Consensus 6 ~~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~-~~ 39 (102)
T PF00011_consen 6 EDEYIIKVDLP-GFDKEDIKIKVDDNKLVISGK-RK 39 (102)
T ss_dssp SSEEEEEEE-T-TS-GGGEEEEEETTEEEEEEE-EE
T ss_pred CCEEEEEEECC-CCChHHEEEEEecCccceece-ee
Confidence 45788999999 889999999999999999998 44
No 64
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=65.32 E-value=28 Score=27.05 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=55.6
Q ss_pred eeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEE-ECCCCcccCceEE
Q 044552 22 MDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQF-RLPDDVKVDEIRA 100 (162)
Q Consensus 22 ~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~-~LP~~vd~~~i~A 100 (162)
|-|-++++..-+.+.|-|++.+++.|.++.. .|.|....-+ ...|.-.+ .|-.+|++++-.-
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~v~dlq----------------GK~y~~~vnnLlk~I~vEks~~ 139 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLKVHDLQ----------------GKNYRMIVNNLLKPISVEKSSK 139 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEeccc-ceeeeeeecC----------------CcceeeehhhhccccChhhccc
Confidence 5678888889999999999999999999998 6888755321 11232222 2446788888777
Q ss_pred EEeCCEEEEEEcCcCC
Q 044552 101 SMRDGVLTITVPIKDD 116 (162)
Q Consensus 101 ~~~nGvL~I~lP~K~~ 116 (162)
...-....|.+. |.+
T Consensus 140 kvKtd~v~I~~k-kVe 154 (224)
T KOG3260|consen 140 KVKTDTVLILCK-KVE 154 (224)
T ss_pred ccccceEEEeeh-hhh
Confidence 777676667776 665
No 65
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=62.79 E-value=17 Score=24.25 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=29.8
Q ss_pred ccEEEEEEECCCCcccCceEEEEeCCEEEEEEcCcCC
Q 044552 80 GGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 80 ~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~~ 116 (162)
...|.-.+.|| .+.++.|+..++++.|+|..- +..
T Consensus 6 ~d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~-~~~ 40 (87)
T cd06481 6 KEGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGK-REK 40 (87)
T ss_pred cceEEEEEECC-CCChHHeEEEEECCEEEEEEE-Eee
Confidence 34688889999 889999999999999999997 544
No 66
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=62.73 E-value=27 Score=22.06 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=28.3
Q ss_pred CeEEEEEEcCC-CCCCCEEEEEECCeEEEEEEEEe
Q 044552 29 HAHVFEIDLPG-LAKEDVTLQVHGDRILHISAERK 62 (162)
Q Consensus 29 ~~~~i~~~lPG-~~~edi~V~v~~~~~L~I~g~~~ 62 (162)
+.|.+.++||+ +++++.+..+.++ .|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 56899999995 7999999999998 799997664
No 67
>PRK10743 heat shock protein IbpA; Provisional
Probab=61.24 E-value=16 Score=26.73 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=28.7
Q ss_pred cEEEEEEECCCCcccCceEEEEeCCEEEEEEcCcCC
Q 044552 81 GSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 81 ~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~~ 116 (162)
..|.-...|| +++.+.|+..+++|.|+|..- +..
T Consensus 45 ~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge-~~~ 78 (137)
T PRK10743 45 NHYRIAIAVA-GFAESELEITAQDNLLVVKGA-HAD 78 (137)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEE-ECc
Confidence 3567778899 899999999999999999997 544
No 68
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=60.83 E-value=54 Score=25.14 Aligned_cols=45 Identities=29% Similarity=0.588 Sum_probs=31.7
Q ss_pred CCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 42 KEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 42 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
|++++|+++++ .++++|.+ |...+.|.-| .++..+++|.|.|...
T Consensus 13 P~~V~v~i~~~-~v~VkGp~-------------------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGL-VVTVKGPK-------------------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECC-EEEEECCC-------------------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 67889999988 79999874 4444444322 4555678888888865
No 69
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=59.63 E-value=17 Score=27.71 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=28.4
Q ss_pred EEEEEEcC-CCCCCCEEEEEECCeEEEEEEEEecc
Q 044552 31 HVFEIDLP-GLAKEDVTLQVHGDRILHISAERKEE 64 (162)
Q Consensus 31 ~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~ 64 (162)
|.=+.-|| |++++.|.=.+..++.|+|+|.+...
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 44467899 99999999999976699999988654
No 70
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=59.16 E-value=65 Score=24.43 Aligned_cols=45 Identities=27% Similarity=0.501 Sum_probs=31.5
Q ss_pred CCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 42 KEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 42 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
|++++|+++++ .++++|.+ |...+.|. |. .+....+++.|.|..+
T Consensus 7 P~~V~v~i~~~-~i~vkGp~-------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGN-IVTVKGPK-------------------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCC-EEEEECCC-------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 57889999988 79999874 34444443 32 3555678888888865
No 71
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=57.13 E-value=29 Score=21.05 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=20.4
Q ss_pred CCCCCCCEEEEEECCeEEEEEEEEecc
Q 044552 38 PGLAKEDVTLQVHGDRILHISAERKEE 64 (162)
Q Consensus 38 PG~~~edi~V~v~~~~~L~I~g~~~~~ 64 (162)
++++..+|.|.+.++ .+.|+|.....
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESSC
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcHH
Confidence 367777999999999 79999998643
No 72
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=56.53 E-value=16 Score=25.59 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=15.0
Q ss_pred CceEEEEeCCEEEEEEc
Q 044552 96 DEIRASMRDGVLTITVP 112 (162)
Q Consensus 96 ~~i~A~~~nGvL~I~lP 112 (162)
..+.+.+.+|+|+|.++
T Consensus 30 ~d~d~e~~~gVLti~~~ 46 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFP 46 (109)
T ss_dssp STEEEEEETTEEEEEET
T ss_pred CceEEEccCCEEEEEEC
Confidence 35789999999999998
No 73
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=56.12 E-value=51 Score=22.62 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=31.1
Q ss_pred CCceeeEEEcCCeEEEEEEcCCC-----CCCCEEEEEECCeEEEEE
Q 044552 18 IDTQMDWKETPHAHVFEIDLPGL-----AKEDVTLQVHGDRILHIS 58 (162)
Q Consensus 18 ~~p~~di~e~~~~~~i~~~lPG~-----~~edi~V~v~~~~~L~I~ 58 (162)
..|.+.|+++++.|.|.+--+.. .++...|.-+++ .|.|.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 57999999999999998876654 666777777777 46665
No 74
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=55.59 E-value=62 Score=25.03 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=32.4
Q ss_pred CCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 42 KEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 42 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
|++++|+++++ .++|+|.+ |...+.|.=|. ..|....+||.|.|.-+
T Consensus 13 P~~V~V~i~~~-~v~VkGp~-------------------G~L~~~~~~~~----~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSR-KVTVTGKY-------------------GELTRSFRHLP----VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECC-EEEEECCC-------------------ceEEEEecCCC----ceEEEEeCCCEEEEEeC
Confidence 68999999998 79999874 44454443221 24566678888887755
No 75
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=55.31 E-value=70 Score=24.28 Aligned_cols=44 Identities=20% Similarity=0.557 Sum_probs=31.0
Q ss_pred CCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 42 KEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 42 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
|++++|+++++ .|+|+|.. |...+.| |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~~-~v~v~Gp~-------------------G~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGN-VVTVKGPK-------------------GELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCC-EEEEEcCC-------------------eEEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 57899999987 79999874 4445444 54 3445568888877765
No 76
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=55.23 E-value=12 Score=23.44 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=11.9
Q ss_pred CceEEEEeCCEEEEEEc
Q 044552 96 DEIRASMRDGVLTITVP 112 (162)
Q Consensus 96 ~~i~A~~~nGvL~I~lP 112 (162)
..|.|.|+||+|.-.=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 46899999999975544
No 77
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=55.17 E-value=43 Score=24.32 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=29.4
Q ss_pred CeEEEEEEcC-CCCCCCEEEEEECCeEEEEEEEEecc
Q 044552 29 HAHVFEIDLP-GLAKEDVTLQVHGDRILHISAERKEE 64 (162)
Q Consensus 29 ~~~~i~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~ 64 (162)
..|.-++.|| +++.+.++-++.+| +|+|+-.+...
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~~~ 135 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKAEP 135 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCc-EEEEEEecccc
Confidence 6788899999 67888899999998 99999877544
No 78
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=53.83 E-value=23 Score=26.13 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=28.0
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEcCcCC
Q 044552 82 SFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDD 116 (162)
Q Consensus 82 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP~K~~ 116 (162)
.|.-.+.|| +++.+.|...+++|.|+|..- +..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge-~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGT-PEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEE-Ecc
Confidence 467778888 889999999999999999997 443
No 79
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=52.66 E-value=55 Score=20.96 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=27.4
Q ss_pred cEEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 81 GSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 81 ~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
....-.|.+|..++.+.++..+.+.-|.|.++
T Consensus 8 ~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 8 DEVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred CEEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 34677788999999999999999998899886
No 80
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=50.21 E-value=81 Score=23.95 Aligned_cols=44 Identities=20% Similarity=0.554 Sum_probs=30.8
Q ss_pred CCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 42 KEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 42 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
|++++|+++++ .|+|+|.. |...+.| |.. +....+++.|.|...
T Consensus 12 P~~V~v~~~~~-~v~vkGp~-------------------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGN-VVTVKGPK-------------------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECC-EEEEECCC-------------------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 57899999988 79999874 4455555 443 344568887777754
No 81
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=49.99 E-value=31 Score=24.11 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=13.5
Q ss_pred eEEEEeCCEEEEEEc
Q 044552 98 IRASMRDGVLTITVP 112 (162)
Q Consensus 98 i~A~~~nGvL~I~lP 112 (162)
+.+.+.+|+|+|+++
T Consensus 29 ~D~e~~~gVLti~f~ 43 (105)
T PRK00446 29 IDCERNGGVLTLTFE 43 (105)
T ss_pred eeeeccCCEEEEEEC
Confidence 668889999999998
No 82
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=49.99 E-value=39 Score=23.51 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=14.7
Q ss_pred CceEEEEeCCEEEEEEc
Q 044552 96 DEIRASMRDGVLTITVP 112 (162)
Q Consensus 96 ~~i~A~~~nGvL~I~lP 112 (162)
..+.+.+.+|+|+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 45678889999999999
No 83
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=48.88 E-value=89 Score=23.78 Aligned_cols=44 Identities=18% Similarity=0.498 Sum_probs=30.1
Q ss_pred CCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 42 KEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 42 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
|++++|+++++ .|+|+|.. |+.. ..||.. +....+++.|.|..+
T Consensus 12 P~~V~v~i~~~-~v~vkGp~-------------------G~l~--~~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQ-IIKVKGPK-------------------GTLS--RKIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECC-EEEEECCC-------------------EEEE--EECCCC-----eEEEEeCCEEEEEcC
Confidence 47888999988 79999874 2333 455553 445568887777755
No 84
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=46.48 E-value=41 Score=23.34 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=13.4
Q ss_pred eEEEEeCCEEEEEEc
Q 044552 98 IRASMRDGVLTITVP 112 (162)
Q Consensus 98 i~A~~~nGvL~I~lP 112 (162)
+.+.+.+|+|+|+++
T Consensus 27 ~D~e~~~gVLti~f~ 41 (102)
T TIGR03421 27 IDCERAGGVLTLTFE 41 (102)
T ss_pred eeeecCCCEEEEEEC
Confidence 667788999999998
No 85
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=45.46 E-value=32 Score=23.67 Aligned_cols=14 Identities=36% Similarity=0.684 Sum_probs=12.4
Q ss_pred EEEEeCCEEEEEEc
Q 044552 99 RASMRDGVLTITVP 112 (162)
Q Consensus 99 ~A~~~nGvL~I~lP 112 (162)
.+.+.+|||+|+++
T Consensus 30 D~e~~~gVLti~~~ 43 (97)
T TIGR03422 30 DVEYSSGVLTLELP 43 (97)
T ss_pred ccccCCCEEEEEEC
Confidence 56788999999998
No 86
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=45.12 E-value=45 Score=21.10 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=29.8
Q ss_pred CCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 42 KEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 42 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
++.++|++.++ .+.+.|..- ..++.||..+.. +...+++.+.+...
T Consensus 2 P~gV~v~~~~~-~i~v~G~~g---------------------~l~~~~~~~v~v---~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKGN-IITVKGPKG---------------------ELSRPIPPGVKV---EIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEETT-EEEEESSSS---------------------EEEEEETTTEEE---EEEEETTSEEEEEE
T ss_pred CCcEEEEEeCc-EEEEECCCE---------------------eEEEECCCCeeE---EEEcCCCceEEEEC
Confidence 46789999997 788887642 455677755322 22255777766664
No 87
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=40.47 E-value=1.3e+02 Score=23.26 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=30.4
Q ss_pred CCCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCC-cccCceEEEEeCCEEEEEEc
Q 044552 42 KEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDD-VKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 42 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~-vd~~~i~A~~~nGvL~I~lP 112 (162)
|++++|+++++ .|+|+|.+ |+.. ..||.. + .|....+++.|.|.-+
T Consensus 12 P~~V~V~i~~~-~ItVkGpk-------------------G~Ls--~~~~~~~~---~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKDR-IVTVKGKR-------------------GTLT--KDLRHLQL---DFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeCC-EEEEECCC-------------------cEEE--EEcCCCCc---EEEEEecCCEEEEEeC
Confidence 58899999998 79999874 3333 344431 2 2445667788777754
No 88
>PRK10568 periplasmic protein; Provisional
Probab=38.84 E-value=59 Score=25.20 Aligned_cols=25 Identities=12% Similarity=0.345 Sum_probs=21.6
Q ss_pred CCCCCCCEEEEEECCeEEEEEEEEec
Q 044552 38 PGLAKEDVTLQVHGDRILHISAERKE 63 (162)
Q Consensus 38 PG~~~edi~V~v~~~~~L~I~g~~~~ 63 (162)
|+++..+|+|.+.+| .+.++|....
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeCC
Confidence 567778999999998 7999999874
No 89
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=35.78 E-value=1.2e+02 Score=20.41 Aligned_cols=33 Identities=6% Similarity=0.249 Sum_probs=28.5
Q ss_pred ccEEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 80 GGSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 80 ~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
.....-.|+||.++..+.+...+...-|+|.+.
T Consensus 14 ~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~ 46 (93)
T cd06494 14 MDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK 46 (93)
T ss_pred cCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC
Confidence 345677789999999999999999999999985
No 90
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=30.90 E-value=24 Score=26.33 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=16.9
Q ss_pred CCcccCceEEEEeCCEEEEEEc
Q 044552 91 DDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 91 ~~vd~~~i~A~~~nGvL~I~lP 112 (162)
+.++.+.-.+.|.||+|+|.|+
T Consensus 67 e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred hhcCccccccccccceEEEEec
Confidence 3444455667899999999998
No 91
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=29.51 E-value=88 Score=22.91 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCCCCCEEEEEECCeEEEEEEEEecc
Q 044552 38 PGLAKEDVTLQVHGDRILHISAERKEE 64 (162)
Q Consensus 38 PG~~~edi~V~v~~~~~L~I~g~~~~~ 64 (162)
.|+...++.|.+.+| .++++|.....
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCCH
Confidence 477888899999998 89999998753
No 92
>PF11741 AMIN: AMIN domain; InterPro: IPR021731 This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localises to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localisation of periplasmic protein complexes []. ; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity
Probab=28.85 E-value=1.6e+02 Score=18.89 Aligned_cols=16 Identities=19% Similarity=0.059 Sum_probs=8.5
Q ss_pred eEEEcCCeEEEEEEcC
Q 044552 23 DWKETPHAHVFEIDLP 38 (162)
Q Consensus 23 di~e~~~~~~i~~~lP 38 (162)
++.++++...|.++++
T Consensus 2 ~v~~~~~~~~v~i~~~ 17 (95)
T PF11741_consen 2 RVNPTDDGTRVVIDTD 17 (95)
T ss_pred EEeeCCCcEEEEEEeC
Confidence 4455555555555555
No 93
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=28.82 E-value=1.6e+02 Score=22.58 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=28.0
Q ss_pred CCCCEEEEEECCeEEEEEEEEecccc--CCCCcEEEEEcCcccEEEEEEECCCC
Q 044552 41 AKEDVTLQVHGDRILHISAERKEEPE--DKGDKWHCRERPHGGSFTRQFRLPDD 92 (162)
Q Consensus 41 ~~edi~V~v~~~~~L~I~g~~~~~~~--~~~~~~~~~e~~~~~~f~r~~~LP~~ 92 (162)
++++++|+ ++ .|+|++.+..... -..+.+...+...+|.|+-++.+|..
T Consensus 30 ~~~nv~v~--~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 30 SADNVEFS--DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred ccccEEEE--CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 35666554 77 5999987653211 11122222222238889999999853
No 94
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=27.48 E-value=2.8e+02 Score=21.29 Aligned_cols=21 Identities=14% Similarity=0.476 Sum_probs=17.3
Q ss_pred CCCCCEEEEEECCeEEEEEEEE
Q 044552 40 LAKEDVTLQVHGDRILHISAER 61 (162)
Q Consensus 40 ~~~edi~V~v~~~~~L~I~g~~ 61 (162)
.-|++++|+++++ .++++|-+
T Consensus 10 ~~P~gV~V~i~~~-~v~vkGpk 30 (178)
T COG0097 10 VIPAGVTVSIEGQ-VVTVKGPK 30 (178)
T ss_pred ecCCCeEEEEecc-EEEEECCC
Confidence 3488999999987 79999874
No 95
>PF10618 Tail_tube: Phage tail tube protein; InterPro: IPR019596 This entry is represented by Bacteriophage Mu, GpM tail tube protein. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.
Probab=26.28 E-value=1.9e+02 Score=20.44 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=36.7
Q ss_pred EEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCce--------EEEEeCCEEE
Q 044552 46 TLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEI--------RASMRDGVLT 108 (162)
Q Consensus 46 ~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i--------~A~~~nGvL~ 108 (162)
.+.+.++-.+...|..........+.+.+.|.......+-.+..+.+.|...| .+.++||.-.
T Consensus 17 ~l~~~~g~~~~~gg~~Re~~~G~~~v~G~sE~~~~~~i~~ti~~~~~~~~~~i~~~~~~tvt~e~~nG~~y 87 (119)
T PF10618_consen 17 QLPVKGGATYNPGGVKRETVVGQDGVHGYSETPKAPFIKCTIRDTKDTDVDDINDITDATVTFELDNGKVY 87 (119)
T ss_pred EEEccCCeEECCCCeEEeeeECCCCcccEeccccCcEEEEEEEcCCCCCHHHHhCCcccEEEEEecCCcEE
Confidence 44444443455555544433333455666666657778888888877666544 5556777433
No 96
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=26.21 E-value=1.9e+02 Score=18.70 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=25.4
Q ss_pred EEEEEEECCCCcccCceEEEEeCCEEEEEEc
Q 044552 82 SFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112 (162)
Q Consensus 82 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lP 112 (162)
...-.|.+|.++..+.++..+...-|.|.+.
T Consensus 9 ~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06493 9 DLTLTIRLPEDTTKEDIRIKFLPDHISIALK 39 (85)
T ss_pred EEEEEEECCCCCChhhEEEEEecCEEEEEeC
Confidence 4566788998999999999998888888774
No 97
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=25.41 E-value=1.1e+02 Score=18.95 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=19.0
Q ss_pred EEEcCCCCC-CCEEEEEECCeEEEEE
Q 044552 34 EIDLPGLAK-EDVTLQVHGDRILHIS 58 (162)
Q Consensus 34 ~~~lPG~~~-edi~V~v~~~~~L~I~ 58 (162)
.++-.||.. +.|+|.+.++ .|+|+
T Consensus 32 WL~~aGF~~G~~v~V~v~~g-~lvIt 56 (57)
T PF08845_consen 32 WLEEAGFTIGDPVKVRVMPG-CLVIT 56 (57)
T ss_pred hhHHhCCCCCCEEEEEEECC-EEEEe
Confidence 345678865 7999999999 59987
No 98
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=24.59 E-value=1.2e+02 Score=21.33 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=13.6
Q ss_pred eEEEEeCCEEEEEEcCcC
Q 044552 98 IRASMRDGVLTITVPIKD 115 (162)
Q Consensus 98 i~A~~~nGvL~I~lP~K~ 115 (162)
+.+.+.+|||+|+++ ..
T Consensus 30 ~D~d~qg~VlTl~f~-ng 46 (106)
T COG1965 30 IDCEIQGGVLTLTFD-NG 46 (106)
T ss_pred cceecCCCEEEEEEC-CC
Confidence 456678999999999 44
No 99
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=24.31 E-value=1.4e+02 Score=23.67 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=25.9
Q ss_pred EEEECCeEEEEEEEEeccccC-CCCcE-----EEEEcCcccEEEEEEECCCC
Q 044552 47 LQVHGDRILHISAERKEEPED-KGDKW-----HCRERPHGGSFTRQFRLPDD 92 (162)
Q Consensus 47 V~v~~~~~L~I~g~~~~~~~~-~~~~~-----~~~e~~~~~~f~r~~~LP~~ 92 (162)
|.+.++ .|+|++.+...... ....| .......+|.|+-++.||..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 566788 69999987643110 11111 11111227789999999853
No 100
>KOG4356 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.12 E-value=16 Score=30.63 Aligned_cols=68 Identities=28% Similarity=0.476 Sum_probs=48.4
Q ss_pred EEcCCeEEEEEEcCCCCC-CCEEEEEECCeEEEEEEEEeccccCCCCcEEEEEcCcccEEEEEEECCCCcccCceEEEEe
Q 044552 25 KETPHAHVFEIDLPGLAK-EDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMR 103 (162)
Q Consensus 25 ~e~~~~~~i~~~lPG~~~-edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~vd~~~i~A~~~ 103 (162)
.|..+.....++||++.. ..++..+.+.+ |.|.+.+. .|.-...+|..++.+...|.|+
T Consensus 236 ~e~p~~i~~e~~lp~~n~~~~~sl~v~e~r-i~i~~~~~-------------------~y~l~~~~~~~~~~~~~~a~Fd 295 (310)
T KOG4356|consen 236 DEAPDEIEAEIDLPNYNSMQEFSLLVGEDR-IVIETRKQ-------------------GYRLNLNIPYIIDQDRAPALFD 295 (310)
T ss_pred ccCcchhhhhhhcccchhhhccccccCCcc-eEeccCcc-------------------ceeeccccccccCcccchhhHH
Confidence 344566777888888755 45666666554 66664432 3566778899999999999996
Q ss_pred C--CEEEEEEc
Q 044552 104 D--GVLTITVP 112 (162)
Q Consensus 104 n--GvL~I~lP 112 (162)
. .-|.|+||
T Consensus 296 ~~~~al~i~~P 306 (310)
T KOG4356|consen 296 KTTKALHITIP 306 (310)
T ss_pred HHHHhhheecc
Confidence 4 58888888
No 101
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=22.27 E-value=55 Score=20.58 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.1
Q ss_pred CCCCCCEEEEEECCeEEEEEEEE
Q 044552 39 GLAKEDVTLQVHGDRILHISAER 61 (162)
Q Consensus 39 G~~~edi~V~v~~~~~L~I~g~~ 61 (162)
-|+.+.|.+....+ .|.|+|+.
T Consensus 22 ~f~~~~I~l~t~~g-~l~I~G~~ 43 (66)
T PF07873_consen 22 SFDDEEIRLNTKKG-KLTIKGEG 43 (66)
T ss_dssp EEETTEEEEEETTE-EEEEEEEE
T ss_pred EECCCEEEEEeCCE-EEEEECce
Confidence 35778889998887 79999985
No 102
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=21.16 E-value=1.7e+02 Score=19.50 Aligned_cols=28 Identities=7% Similarity=0.222 Sum_probs=15.6
Q ss_pred CCCCCceeeEEEcCCeEEEEEEcCCCCC
Q 044552 15 YGGIDTQMDWKETPHAHVFEIDLPGLAK 42 (162)
Q Consensus 15 ~~~~~p~~di~e~~~~~~i~~~lPG~~~ 42 (162)
|....|.+.+...++.|..++.||.-.+
T Consensus 17 ~~~~~P~~~~~~~~~~~~c~v~LP~~~p 44 (90)
T PF03368_consen 17 FTNLKPEFEIEKIGSGFICTVILPINSP 44 (90)
T ss_dssp T--SS-EEEEEE--G-EEEEEE--TT-S
T ss_pred CccCCceEEEEEcCCcEEEEEECCCCCC
Confidence 3446799999999999999999995433
No 103
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=21.11 E-value=72 Score=21.31 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=19.7
Q ss_pred cCCCCCCCEEEEEECCeEEEEEEEE
Q 044552 37 LPGLAKEDVTLQVHGDRILHISAER 61 (162)
Q Consensus 37 lPG~~~edi~V~v~~~~~L~I~g~~ 61 (162)
+=-|+.+.|.+....+ .|.|+|+.
T Consensus 38 I~~y~~~~I~l~t~~G-~l~I~G~~ 61 (85)
T TIGR02856 38 LVVFSPEEVKLNSTNG-KITIEGKN 61 (85)
T ss_pred eEEECCCEEEEEcCce-EEEEEccc
Confidence 3346889999999988 79999985
No 104
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.09 E-value=2.5e+02 Score=19.27 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=26.5
Q ss_pred eeEEEcCCeEEEEEEcCCCCCCCEEEEEECCeEEEEEEE
Q 044552 22 MDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAE 60 (162)
Q Consensus 22 ~di~e~~~~~~i~~~lPG~~~edi~V~v~~~~~L~I~g~ 60 (162)
++|.+.+| .|....||++. |.|..++. .|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgis~--ieik~E~k-kL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGISR--IEIKPENK-KLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCceE--EEEecccc-eEEEecc
Confidence 67888888 67788999864 77777777 6999874
No 105
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=20.10 E-value=89 Score=20.28 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=23.4
Q ss_pred eEEEcCCeEEEEEEcCCCCCCCEEEEEECC
Q 044552 23 DWKETPHAHVFEIDLPGLAKEDVTLQVHGD 52 (162)
Q Consensus 23 di~e~~~~~~i~~~lPG~~~edi~V~v~~~ 52 (162)
-|.+..+.|.|++.+=|+....|.+.-.+|
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG 43 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNG 43 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCC
Confidence 477778999999999999988898888777
Done!