RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 044552
(162 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 146 bits (371), Expect = 4e-46
Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 12/124 (9%)
Query: 16 GGIDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCR 75
+ +MDWKETP AHVF+ DLPG+ KE+V ++V +L +S ER +E EDK DKWH
Sbjct: 40 AFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRV 99
Query: 76 ERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDDELTKKKNSKHKKTTSSVSV 135
ER G F R+FRL +D KV+E++A + +GVLT+TVP K + K + ++
Sbjct: 100 ERSS-GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVP-------KAEVKKPEV----KAI 147
Query: 136 EISG 139
+ISG
Sbjct: 148 QISG 151
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 134 bits (341), Expect = 4e-42
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 22 MDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGG 81
+D KE + V DLPG+ + +Q+ IL I ERK E + +++ ER +G
Sbjct: 7 VDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG- 64
Query: 82 SFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112
SF R+F LPD D I A+ R+GVL I +P
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIP 95
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 127 bits (321), Expect = 2e-38
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 22 MDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGG 81
+ E LPG+ KED+ L GD L I A+R + ++ E P
Sbjct: 59 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEE 117
Query: 82 SFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDDELTKKK 122
R +LP VK + A +GVL++ +P + + K
Sbjct: 118 EIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGI 158
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 120 bits (304), Expect = 3e-36
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 15 YGGIDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHC 74
Y + +D E V DL G KE + +V G L I AER+ + +
Sbjct: 20 YELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREIT---EPGVKYL 76
Query: 75 RERPHGGSFTRQFRLPDDVKVDE-IRASMRDGVLTITVPIKDDELTKKK 122
+RP + RLP +V D I +GVLTI +PI + K +
Sbjct: 77 TQRP--KYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFKFE 123
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 71.2 bits (175), Expect = 3e-17
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 25 KETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFT 84
T +D+ A +++T++ D ++ I+ + ++ G + R FT
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTK-DGVVEITGKHAARQDEHG--YISRC------FT 53
Query: 85 RQFRLPDDVKVDEIRASM-RDGVLTITVPIK 114
R++ LP V ++ +S+ +G LT+ P+
Sbjct: 54 RKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP 84
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 70.6 bits (173), Expect = 8e-17
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 25 KETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFT 84
P +D+ + E+++++V + + A +E P++ G + RE F
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVV-GDHVEVHARHEERPDEHG--FIARE------FH 57
Query: 85 RQFRLPDDVKVDEIRASM-RDGVLTITVPIKDDELTKKK 122
R++RLP V + +++ +GVL+I + +
Sbjct: 58 RRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPS 96
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 70.4 bits (172), Expect = 5e-16
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 9 SSLVHPYGGIDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDK 68
S L P + + +D+ + E++ ++V ++ + + +E ++
Sbjct: 53 SFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKHEERQDEH 111
Query: 69 GDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASM-RDGVLTITVPIKDDELTKKK 122
G + RE F R++R+P DV I +S+ DGVLT+ P K ++
Sbjct: 112 G--FISRE------FHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERT 158
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 67.9 bits (166), Expect = 7e-16
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 25 KETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFT 84
+D+ + E++ ++V ++ + + +E ++ G F
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKHEERQDEHGFISRE--------FH 52
Query: 85 RQFRLPDDVKVDEIRASM-RDGVLTITVPIKDDELTKK 121
R++R+P DV I +SM DGVLT+ P K ++
Sbjct: 53 RKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 67.2 bits (164), Expect = 2e-15
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 25 KETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFT 84
+ V +D+ + ED+T++V D + I + E +D G F
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGKHNERQDDHGYISRE--------FH 58
Query: 85 RQFRLPDDVKVDEIRASM-RDGVLTITVPIKDDELTKKKNSK 125
R++RLP +V + S+ DG+LT + P + + +
Sbjct: 59 RRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSER 100
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 65.6 bits (159), Expect = 2e-13
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 19 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERP 78
+ + H+ P A +DV + G+++ KEE + RE
Sbjct: 224 EIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHRE-- 281
Query: 79 HGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPI 113
F + F P+ V + +A + DG++ + P+
Sbjct: 282 ----FYKAFVTPEVVDASKTQAEIVDGLMVVEAPL 312
Score = 56.4 bits (135), Expect = 3e-10
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 34 EIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDV 93
++ E++T++ ++ L + A++ D R LP V
Sbjct: 117 YFNVKNFKAEEITIKADKNK-LVVRAQKSVACGDAAMSES---------VGRSIPLPPSV 166
Query: 94 KVDEIRASM-RDGVLTITVPIK 114
+ I+A++ D VL I P+
Sbjct: 167 DRNHIQATITTDDVLVIEAPVN 188
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 32.6 bits (74), Expect = 0.047
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 23/83 (27%)
Query: 29 HAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFR 88
H + LPG K+ V L +G + + A G R
Sbjct: 305 HNRQVRLFLPGFDKKQVKLTQYGPEVT-VEA---------------------GDQRRNIF 342
Query: 89 LPDDVKVDEI-RASMRDGVLTIT 110
LP + I A ++ L I+
Sbjct: 343 LPPALSGRPITGAKFQNNYLIIS 365
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.20
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 17/78 (21%)
Query: 57 ISA--ERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIK 114
I+ +EPE KW RE ++ RL ++D M
Sbjct: 74 IAQADRLTQEPE-SIRKW--REE-------QRKRL---QELDAASKVMEQEWREKAKKDL 120
Query: 115 DD--ELTKKKNSKHKKTT 130
++ + ++ K+K
Sbjct: 121 EEWNQRQSEQVEKNKINN 138
Score = 25.1 bits (54), Expect = 9.7
Identities = 7/72 (9%), Positives = 24/72 (33%), Gaps = 17/72 (23%)
Query: 53 RILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVP 112
R+ E + +W + + + ++ +V++ + + R
Sbjct: 97 RL----QELDAASKVMEQEWREKAKKDLEEWNQRQ----SEQVEKNKINNR--------- 139
Query: 113 IKDDELTKKKNS 124
I D ++ ++
Sbjct: 140 IADKAFYQQPDA 151
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.38
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 121 KKNSKHKKTTSSVSVEISGGDGNAPA 146
+K + KK +S+ + D +APA
Sbjct: 18 EKQAL-KKLQASLKLY---ADDSAPA 39
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1,
S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo
sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Length = 334
Score = 29.3 bits (65), Expect = 0.56
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 7 GISSLVHPYGGIDT---QMDWKETPHAHVFEIDLPGLAK 42
+V+ G+DT ++ ++ + FE+D P +
Sbjct: 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVT 128
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia
galactanivorans} PDB: 3ilf_A*
Length = 266
Score = 27.6 bits (61), Expect = 1.6
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 70 DKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDDELTKKKNSKHKKT 129
+KW+ G F+ + V DG L + ++ + + + K
Sbjct: 36 NKWYDYHPFWEGRAPSNFK-KGNAFVS-------DGFLNLRSTLRKEPSSVQDPFKDIWV 87
Query: 130 TSS 132
++
Sbjct: 88 DAA 90
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A
{Clostridium thermocellum}
Length = 811
Score = 27.0 bits (59), Expect = 3.9
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 77 RPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITV 111
+P +P ++ R ITV
Sbjct: 736 KPDYDGLKIDPCIPKAWDGYKVTRYFRGSTYEITV 770
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 26.2 bits (58), Expect = 4.9
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 81 GSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDDELTK 120
+F+ +P+ +++ L + KD E T
Sbjct: 187 NAFSTTIHVPNIATGEQLLE-----ALELLGNFKDKERTT 221
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease; 2.05A {Brucella
melitensis biovar abortus}
Length = 458
Score = 26.5 bits (59), Expect = 5.0
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 37 LPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKW 72
LP E+V + + G I I P+D+
Sbjct: 21 LPDGWAENVRIGIAGGVICSIETGVLAGPDDERQSV 56
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei}
SCOP: d.142.2.4
Length = 277
Score = 26.0 bits (56), Expect = 6.3
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 60 ERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLT 108
+ + +W E+ HG +F L + + +R + R G++
Sbjct: 23 QSLHKSGLAAQEWVACEKVHGTNF--GIYLINQGDHEVVRFAKRSGIMD 69
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 25.7 bits (56), Expect = 7.7
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 62 KEEPEDKGDKWHCRERPHGGSFTRQFRLPD-DVKVDEIRASMRDGVLTI 109
++ E + + P ++ DV + ++ +R G+ +
Sbjct: 387 EKLREYEPESLSIPRIPLDKFNLEDVQICGCDVSLKKVDEVIRKGITDL 435
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.411
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,571,572
Number of extensions: 149591
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 27
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)