RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 044552
(162 letters)
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 150
Score = 97.9 bits (243), Expect = 2e-27
Identities = 57/138 (41%), Positives = 83/138 (60%), Gaps = 12/138 (8%)
Query: 2 SLLPVGISSLVHPYGGIDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAER 61
S++P + +MDWKETP AHVF+ DLPG+ KE+V ++V +L +S ER
Sbjct: 25 SIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGER 84
Query: 62 KEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDDELTKK 121
+E EDK DKWH ER G F R+FRL +D KV+E++A + +GVLT+TVP + + +
Sbjct: 85 TKEKEDKNDKWHRVERSS-GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEV 143
Query: 122 KNSKHKKTTSSVSVEISG 139
K +++ISG
Sbjct: 144 K-----------AIQISG 150
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 85.1 bits (210), Expect = 1e-22
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 22 MDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGG 81
+ E LPG+ KED+ L L I A+R + ++ E P
Sbjct: 13 ISIIEGDQHIKVIAWLPGVNKEDIILNAV-GDTLEIRAKRSPLMITESERIIYSEIPEEE 71
Query: 82 SFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDDELTKK 121
R +LP VK + A +GVL++ +P + + K
Sbjct: 72 EIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKG 111
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 27.6 bits (61), Expect = 0.24
Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 24/103 (23%)
Query: 23 DWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGS 82
DW +T V + + + K DV ++ + + P G
Sbjct: 6 DWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKL-----------------PSGED 48
Query: 83 FTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDDELTKKKNSK 125
+ + L + ++ + + I L K + +
Sbjct: 49 YNLKLELLHPIIPEQSTFKVLSTKIEIK-------LKKPEAVR 84
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 388
Score = 27.3 bits (60), Expect = 0.82
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 75 RERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLT---ITVPIKDDELTKKKNSKHKK 128
R + G R D V + +R G T IT+ + + + K + +
Sbjct: 38 RRQGGYGRGGRMKIENDQV---VFTSGVRHGKTTGAPITMDVINKDHQKWLDIMSAE 91
>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 235
Score = 25.2 bits (55), Expect = 3.7
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 65 PEDKGDKWHCRERPHGGSFTRQFRL 89
P++K D W R G F+
Sbjct: 20 PQNKNDNWLARATLIGKGGWSNFKF 44
>d1u14a_ c.51.4.3 (A:) Hypothetical protein YjjX {Salmonella
typhimurium [TaxId: 90371]}
Length = 169
Score = 25.1 bits (55), Expect = 3.7
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 80 GGSFTRQFRLPDDVKVDEIRASMRDGVLTITVPIKDDELTKKKNSKHKK 128
G + + LP + +D +R G + + T K+
Sbjct: 98 GEARSATLPLPAVI-LDRVRQGEALGPV-------MSQYTGIDEIGRKE 138
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 25.0 bits (54), Expect = 4.3
Identities = 9/86 (10%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 46 TLQVHGD---RILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASM 102
L V G R I + + K+ + L V ++
Sbjct: 167 YLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKA 226
Query: 103 RDGVLTITVPIKDDELTKKKNSKHKK 128
+ + + L+ + +++
Sbjct: 227 LMTLQQHGASLLTESLSADEWLLYEQ 252
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 24.1 bits (52), Expect = 5.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 39 GLAKEDVTLQVHGDRILHISAERK 62
G+ + +VT + D ILH+SA+ K
Sbjct: 80 GMPQIEVTFDIDADGILHVSAKDK 103
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 131
Score = 24.1 bits (52), Expect = 6.1
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 107 LTITVPIKDDELTKKKNSKHKKTTSSVSVEISGGD 141
L + VP + K K+ + V + G
Sbjct: 19 LDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQP 53
>d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal
domain {Rhodococcus sp. mb1 [TaxId: 51612]}
Length = 347
Score = 24.8 bits (52), Expect = 7.0
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 12 VHPYGGIDTQMDWKETPHAHVF 33
+PY D ++ + F
Sbjct: 37 RNPYDKFDVFAWSTQSTNWLEF 58
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus
[TaxId: 63363]}
Length = 397
Score = 24.6 bits (53), Expect = 7.8
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 75 RERPHGGSFTRQFRLPDDVKVDEIRASMRDGVLT---ITVPIKDDELTKKKNSKHKKTTS 131
R + G R D EI + +R G I + I++ + K +
Sbjct: 42 RRQRGYGRGGRMKIEKDTA---EILSGVRFGKTLGSPIALFIRNRDWENWKEKMAIEGEP 98
Query: 132 SVSVEI 137
S SV
Sbjct: 99 SPSVVP 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.411
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 634,472
Number of extensions: 28593
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 17
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.4 bits)