BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044553
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 47 DRMMKELHSQGKTIEDIV---EVLKRIPIHPRVVP----AIKSAHALGCELRIVSDANLF 99
D +++L QGKT+ I+ EV I + R+ P AI A+G + +++ N F
Sbjct: 113 DESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRF 172
Query: 100 FIETILEHLGIRDCFSEI 117
+ + E LG+ D F+E+
Sbjct: 173 VAKWVAEELGLDDYFAEV 190
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 47 DRMMKELHSQGKTIEDIV---EVLKRIPIHPRVVP----AIKSAHALGCELRIVSDANLF 99
D +++L QGKT+ I+ EV I + R+ P AI A+G + +++ N F
Sbjct: 113 DESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRF 172
Query: 100 FIETILEHLGIRDCFSEI 117
+ + E LG+ D F+E+
Sbjct: 173 VAKWVAEELGLDDYFAEV 190
>pdb|4FFD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 38 PTMPWNSLMDRMMKELHSQG--KTIEDIVEVLKRIP-----IHPRVVPAIKSAHALGCEL 90
P P +++ +M++L + K E+ E+ R+ ++P VV +KS +
Sbjct: 60 PYRPLRDILEEVMRKLAEKYGFKYPENFWEISLRMSQRYGELYPEVVEVLKSLKG-KYHV 118
Query: 91 RIVSDANLFFIETILEHLGIRDCFSEINTN 120
+++D++ L+ LGI+D F I T+
Sbjct: 119 GMITDSDTEQAMAFLDALGIKDLFDSITTS 148
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb
pdb|2DH6|A Chain A, Crystal Structure Of E. Coli Apo-trpb
Length = 397
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + +H ++PA++S+HAL L+++ +
Sbjct: 328 TDDEALEAFKTLCLHEGIIPALESSHALAHALKMMRE 364
>pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
Length = 211
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 5 VVIFDFDKTIIDCDSDNFVVDELGATDLFNQLLPTMPWNSL-MDRMMKELHSQGKT--IE 61
+++FDFD T+++ ++ + + E G + ++ L ++ +++ S K IE
Sbjct: 7 LILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLPIE 66
Query: 62 DIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSDANLFFIETILEHLGIRDCFS 115
+ + +KRI IK G + +VS + I E LG+ F+
Sbjct: 67 KVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFA 120
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 5 VVIFDFDKTIIDCDSDNFVVDELGATDLFNQLLPTMPWNSL-MDRMMKELHSQGKT--IE 61
+++FDFD T+++ ++ + + E G + ++ L ++ +++ S K IE
Sbjct: 7 LILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIE 66
Query: 62 DIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSDANLFFIETILEHLGIRDCFS 115
+ + +KRI IK G + +VS + I E LG+ F+
Sbjct: 67 KVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFA 120
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With L-ser Bound To
The Beta Site
Length = 394
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 327 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 363
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound
Ii
Length = 397
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 328 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 364
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
TRYPTOPHAN Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
Length = 396
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 327 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 363
>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9
Inhibitor In Alpha Site
Length = 391
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 326 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 362
>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7E|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1KFB|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Glycerol Phosphate
pdb|1TJP|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 1-
[(2-Hydroxylphenyl)amino]3-Glycerolphosphate
pdb|1WBJ|B Chain B, Wildtype Tryptophan Synthase Complexed With Glycerol
Phosphate
pdb|2CLI|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2CLK|B Chain B, Tryptophan Synthase In Complex With D-Glyceraldehyde 3-
Phosphate (G3p)
pdb|2CLL|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2J9X|B Chain B, Tryptophan Synthase In Complex With Gp,
Alpha-D,L-Glycerol- Phosphate, Cs, Ph6.5 - Alpha
Aminoacrylate Form - (Gp)e(A- A)
pdb|3CEP|B Chain B, Structure Of A Tryptophan Synthase Quinonoid Intermediate
Length = 396
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 327 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 363
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TRS|B Chain B, Crystal Structures Of Mutant (betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-induced Conformational Changes
pdb|2TSY|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 328 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 364
>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+
Length = 397
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 328 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 364
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 327 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 363
>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium
pdb|1KFC|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Propanol Phosphate
pdb|1KFJ|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With L-Serine
pdb|1KFK|B Chain B, Crystal Structure Of Tryptophan Synthase From Salmonella
Typhimurium
pdb|2RH9|B Chain B, Tryptophan Synthase Complexed With Igp, Internal Aldimine,
Ph 9.0
pdb|2RHG|B Chain B, Tryptophan Synthase Complexed With Igp, Ph 7.0, Internal
Aldimine
Length = 397
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 328 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 364
>pdb|1X42|A Chain A, Crystal Structure Of A Haloacid Dehalogenase Family
Protein (Ph0459) From Pyrococcus Horikoshii Ot3
Length = 232
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 72 IHPRVVPAIKSAHALGCELRIVSDANLFFIETILEHLGIRDCFSEINTN 120
++P VV +KS + ++D++ ++ L+ LGI+D F I T+
Sbjct: 101 LYPEVVEVLKSLKG-KYHVGXITDSDTEYLXAHLDALGIKDLFDSITTS 148
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex
Length = 397
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 328 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 364
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 328 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 364
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxy-4- Fluorophenylthio)-Butylphosphonic Acid
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylsulfinyl)- Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Aminophenylthio)- Butylphosphonic Acid
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)-1- Butenylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)- Butylphosphonic Acid
Length = 397
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 328 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 364
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
pdb|2CLE|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6)-
Lowf6 Complex
pdb|2CLH|B Chain B, Tryptophan Synthase In Complex With (Naphthalene-2'-
Sulfonyl)-2-Amino-1-Ethylphosphate (F19)
pdb|2CLM|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1-
Ethylphosphate (F6f)
pdb|2CLO|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With (Naphthalene-2'-Sulfonyl)-2-Amino-1-Ethylphosphate
(F19)
pdb|2CLF|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6) -
Highf6 Complex
Length = 396
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 327 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 363
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
Length = 396
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 59 TIEDIVEVLKRIPIHPRVVPAIKSAHALGCELRIVSD 95
T ++ +E K + H ++PA++S+HAL L+++ +
Sbjct: 327 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMMRE 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,400,891
Number of Sequences: 62578
Number of extensions: 352966
Number of successful extensions: 922
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 32
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)