BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044554
(829 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 27/166 (16%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGYIT-GNIAISGYPKKQETFT 311
LN ++ + G AL+G SG+GK+TLL +AG + TSG I ++ P K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV- 77
Query: 312 CISGYCEQNDIHSPNVTVYESLLYSAWLRLPP--EVDSQTRKMFIEEVMELVELNTLRKA 369
G QN P++TVY+++ + LR P E+D + R EV +++ ++ L
Sbjct: 78 ---GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR-----EVAKMLHIDKL--- 126
Query: 370 LVGLPGLN----GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA 411
LN LS +++R+ IA LV P ++ +DEP S LDA
Sbjct: 127 ------LNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGYIT-GNIAISGYPKKQETFT 311
++GVS + G AL+G SG GKTT L +LAG + TSG I ++ ++ P K
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREV- 77
Query: 312 CISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALV 371
G QN P++TV+E++ + LR + K +E +L+ N L +
Sbjct: 78 ---GMVFQNYALYPHMTVFENIAFP--LRARRISKDEVEKRVVEIARKLLIDNLLDRKPT 132
Query: 372 GLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRN 423
L G +++R+ +A LV P ++ DEP S LDA I +++
Sbjct: 133 QLSG------GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH 178
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 53/232 (22%)
Query: 225 HSITFDDIT--YSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLL 282
H ITF +I Y D P V+L+ ++ + + G + ++G SG+GK+TL
Sbjct: 2 HDITFRNIRFRYKPDSP-------------VILDNINLSIKQGEVIGIVGRSGSGKSTLT 48
Query: 283 DVLAGRKTSGYI--TGNIAISGYPKK---------------QETFTCISGYCEQNDIHSP 325
++ YI G + I G+ Q+ + + +P
Sbjct: 49 KLI----QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 104
Query: 326 NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385
++V E ++Y+A L + S+ R+ + NT+ VG G GLS +R+
Sbjct: 105 GMSV-EKVIYAAKLAGAHDFISELREGY----------NTI----VGEQGA-GLSGGQRQ 148
Query: 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437
R+ IA LV NP I+ DE TS LD + + MR + + + GRTV+ + R
Sbjct: 149 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHR 199
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 15/161 (9%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGYIT-GNIAISGYPKKQETFT 311
+N ++ + G L+G SG GKTT L ++AG T G I G+ ++ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 312 CISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALV 371
+ Q+ P++TVYE++ + ++ P+ + R + E++++ EL A
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-- 140
Query: 372 GLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
LS +R+R+ +A +V P ++ MDEP S LDA+
Sbjct: 141 ------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 15/161 (9%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGYIT-GNIAISGYPKKQETFT 311
+N ++ + G L+G SG GKTT L ++AG T G I G+ ++ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 312 CISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALV 371
+ Q+ P++TVYE++ + ++ P+ + R + E++++ EL A
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-- 141
Query: 372 GLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
LS +R+R+ +A +V P ++ MDEP S LDA+
Sbjct: 142 ------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 176
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 53/232 (22%)
Query: 225 HSITFDDIT--YSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLL 282
H ITF +I Y D P V+L+ ++ + + G + ++G +G+GK+TL
Sbjct: 2 HDITFRNIRFRYKPDSP-------------VILDNINLSIKQGEVIGIVGRAGSGKSTLT 48
Query: 283 DVLAGRKTSGYI--TGNIAISGYPKK---------------QETFTCISGYCEQNDIHSP 325
++ YI G + I G+ Q+ + + +P
Sbjct: 49 KLI----QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 104
Query: 326 NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385
++V E ++Y+A L + S+ R+ + NT+ VG G GLS +R+
Sbjct: 105 GMSV-EKVIYAAKLAGAHDFISELREGY----------NTI----VGEQGA-GLSGGQRQ 148
Query: 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437
R+ IA LV NP I+ DE TS LD + + MR + + + GRTV+ + R
Sbjct: 149 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHR 199
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 12/182 (6%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCI 313
+L V+ F G + ++G +G+GKTTLL +LAG + G I + G P
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKN 82
Query: 314 SGYCEQN-DIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVG 372
GY QN TV E + +S L + +S+ RK I++V+ELV L+ L A
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKR-IKKVLELVGLSGLAAA--- 136
Query: 373 LPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVL 432
LN LS +++RL IA L + + +DEP S LD + + + + + G+ ++
Sbjct: 137 -DPLN-LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGII 194
Query: 433 FL 434
+
Sbjct: 195 LV 196
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 38/205 (18%)
Query: 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYI--TGNIAISGYPKK- 306
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 307 --------------QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKM 352
Q+ + + +P ++V E ++Y+A L + S+ R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 353 FIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
+ NT+ VG G GLS +R+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y----------NTI----VGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 413 AAAIFMRTVRNTVDTGRTVLFLLKR 437
+ + MR + + + GRTV+ + R
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAHR 197
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 38/205 (18%)
Query: 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYI--TGNIAISGYPKK- 306
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 307 --------------QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKM 352
Q+ + + +P ++V E ++Y+A L + S+ R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 353 FIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
+ NT+ VG G GLS +R+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y----------NTI----VGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 413 AAAIFMRTVRNTVDTGRTVLFLLKR 437
+ + MR + + + GRTV+ + R
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHR 203
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 38/205 (18%)
Query: 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYI--TGNIAISGYPKK- 306
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 307 --------------QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKM 352
Q+ + + +P ++V E ++Y+A L + S+ R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 353 FIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
+ NT+ VG G GLS +R+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y----------NTI----VGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 413 AAAIFMRTVRNTVDTGRTVLFLLKR 437
+ + MR + + + GRTV+ + R
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAAR 197
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 38/205 (18%)
Query: 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYI--TGNIAISGYPKK- 306
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 307 --------------QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKM 352
Q+ + + +P ++V E ++Y+A L + S+ R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 353 FIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
+ NT+ VG G GLS +R+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y----------NTI----VGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 413 AAAIFMRTVRNTVDTGRTVLFLLKR 437
+ + MR + + + GRTV+ + R
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAAR 203
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 24/200 (12%)
Query: 241 EMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGYI-TGN 297
E I PG + + GVS R G + L+G SG+GKTT+L ++AG R T G + G
Sbjct: 21 EKIYPGGARS----VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76
Query: 298 IAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEV 357
++ P ++ G QN ++TVY+++ + + P+ + R V
Sbjct: 77 KRVTDLPPQKRNV----GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------V 126
Query: 358 MELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA---RAA 414
EL+ L P + LS +++R+ +A L P ++ DEP + +D R
Sbjct: 127 RELLRFMRLESYANRFP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184
Query: 415 AIFMRTVRNTVDTGRTVLFL 434
F+R V + + G T +F+
Sbjct: 185 RTFVRQVHD--EMGVTSVFV 202
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 38/205 (18%)
Query: 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYI--TGNIAISGYPKK- 306
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + I G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 307 --------------QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKM 352
Q+ + + +P ++V E ++Y+A L + S+ R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 353 FIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
+ NT+ VG G GLS +R+R+ IA LV NP I+ D+ TS LD
Sbjct: 135 Y----------NTI----VGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 413 AAAIFMRTVRNTVDTGRTVLFLLKR 437
+ + MR + + + GRTV+ + R
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHR 203
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 31/164 (18%)
Query: 263 RPGVLTALMGVSGAGKTTLLDVLAGRKTSG----YITGNI------AISGYPKKQETFTC 312
+ G L+G SG GKTT L ++AG + YI + I PK ++
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 313 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPP--EVDSQTRKMFIEEVMELVELNTL--RK 368
Y P++TVY+++ + LR P E+D + R EV EL+ L L RK
Sbjct: 87 FQSYA-----LYPHMTVYDNIAFPLKLRKVPRQEIDQRVR-----EVAELLGLTELLNRK 136
Query: 369 ALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
LS +R+R+ + +V P + MDEP S LDA+
Sbjct: 137 P-------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 28/202 (13%)
Query: 248 SEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ 307
++++ +L ++ + G A +G+SG GK+TL++++ + +G I I G+ K
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKD 407
Query: 308 ETFTCIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN 364
+ G +Q++I + TV E++L L P D EEV+E ++
Sbjct: 408 FLTGSLRNQIGLVQQDNILFSD-TVKENIL----LGRPTATD--------EEVVEAAKMA 454
Query: 365 TLRKALVGLP-------GLNG--LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 415
++ LP G G LS +++RL+IA + NP I+ +DE TS LD + +
Sbjct: 455 NAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESES 514
Query: 416 IFMRTVRNTVDTGRTVLFLLKR 437
I + + + RT L + R
Sbjct: 515 IIQEAL-DVLSKDRTTLIVAHR 535
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 23/199 (11%)
Query: 249 EDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGYITGNIAISGYPKK 306
+D +L +S +P + A G SG GK+T+ +L + T+G IT I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT----IDGQPID 67
Query: 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPE-----VDSQTRKMFIEEVM 358
E + G+ Q+ T+ E+L Y E +D + F+E +
Sbjct: 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMP 126
Query: 359 ELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFM 418
+ +LNT VG G+ +S +R+RL IA + NP I+ +DE T+ LD+ + ++
Sbjct: 127 D--QLNTE----VGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 419 RTVRNTVDTGRTVLFLLKR 437
+ + +++ GRT L + R
Sbjct: 180 KAL-DSLMKGRTTLVIAHR 197
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 11/178 (6%)
Query: 265 GVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQET---FTCISGYCEQND 321
G +TAL+G SG+GK+T+L +L + +G I++ G+ +Q G Q
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 322 IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG--L 379
I + ++ E++ Y A P V ++ + E + + + + G G L
Sbjct: 428 ILF-SCSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 484
Query: 380 STEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437
S +++R+ IA L+ NP I+ +DE TS LDA + + +D GRTVL + R
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHR 541
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--YITGNIAISGY------P 304
+ +S + G L+G SG GKTT L +AG T G YI N+ P
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN 364
K+++ Y P+ TVY+++ + LR P+ + R + E + L EL
Sbjct: 82 KERDVAXVFQSYA-----LYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELL 136
Query: 365 TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
RK LS +R+R+ + ++ P + DEP S LDA+
Sbjct: 137 N-RKP-------RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 24/198 (12%)
Query: 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK---- 306
++ +L G+S + PG AL+G SG GK+T++ +L + + G I I G K
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNP 1148
Query: 307 QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL 366
+ T + I+ ++ + + ++ E+++Y L P S +EE L ++
Sbjct: 1149 EHTRSQIAIVSQEPTLF--DCSIAENIIYG----LDP---SSVTMAQVEEAARLANIHNF 1199
Query: 367 RKAL-------VGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR 419
L VG G LS +++R+ IA LV NP I+ +DE TS LD + +
Sbjct: 1200 IAELPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQE 1258
Query: 420 TVRNTVDTGRTVLFLLKR 437
+ + GRT + + R
Sbjct: 1259 AL-DRAREGRTCIVIAHR 1275
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 54/209 (25%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCI 313
+L G++ G AL+G SG GK+T++ +L + + G I I G
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGV---------- 480
Query: 314 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMF---IEEVMELVELNTLRKAL 370
D+ N+ +LR V SQ +F IEE + L + R+ +
Sbjct: 481 -------DVRDINL---------EFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEM 524
Query: 371 VG--------------------LPGLNG--LSTEKRKRLTIAVELVANPSIIFMDEPTSG 408
V L G G LS +++R+ IA LV NP I+ +DE TS
Sbjct: 525 VAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSA 584
Query: 409 LDARAAAIFMRTVRNTVDTGRTVLFLLKR 437
LDA + I + + + GRT + + R
Sbjct: 585 LDAESEGIVQQAL-DKAAKGRTTIIIAHR 612
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 11/175 (6%)
Query: 265 GVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQET---FTCISGYCEQND 321
G +TAL+G SG+GK+T+L +L + +G I++ G+ +Q G Q
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 322 IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG--L 379
I + ++ E++ Y A P V ++ + E + + + + G G L
Sbjct: 459 ILF-SCSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 515
Query: 380 STEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFL 434
S +++R+ IA L+ NP I+ +DE TS LDA + + +D GRTVL +
Sbjct: 516 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVI 569
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 120/280 (42%), Gaps = 51/280 (18%)
Query: 220 LPFEPHSITF-----DDITYSVDMPQEM----INPGVSEDQLVLLNGVSGAFRPGVLTAL 270
+ P I F D+ S D+ +M I + + QLV+ NG + + G + +
Sbjct: 243 MKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA---KEGEIIGI 299
Query: 271 MGVSGAGKTTLLDVLAGRKTS--GYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVT 328
+G +G GKTT +L G T+ G +T I Y K Q F G +Q + N +
Sbjct: 300 LGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGTVQQ---YLENAS 355
Query: 329 VYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLT 388
++L S+W F EEV + + L+ L ++ V N LS + ++L
Sbjct: 356 -KDALSTSSW--------------FFEEVTKRLNLHRLLESNV-----NDLSGGELQKLY 395
Query: 389 IAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKRGGQEIYVGPLG 448
IA L + +D+P+S LD I + ++ + V F++ + +
Sbjct: 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID------HDLSIH 449
Query: 449 EHSSHLIKYFEGIP---GVS----TIKDGYNPATWMLEIT 481
++ + I F+G P G++ T+K G N LE+T
Sbjct: 450 DYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVT 489
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 32/234 (13%)
Query: 263 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDI 322
+ + ++G +G GKTT+L +LAG + N + G + + F Y ++
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-GKDEVLKRFRGKEIYNYFKEL 81
Query: 323 HSPNVTVYESLLY----SAWLR-----LPPEVDSQTRKMFIEEVMELVELNTLRKALVGL 373
+S + + + Y S +L+ + ++D + +K +EV EL+ + L +
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKDANI 138
Query: 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRN--------TV 425
GL +RL +A L+ + D+P+S LD R + +R V
Sbjct: 139 LSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Query: 426 DTGRTVLFLLKRGGQEIYVGPLGEHS--SHLIKYFEGIPGVSTIKDGYNPATWM 477
D VL L IY GE S + K + G++ GY PA M
Sbjct: 194 DHDLIVLDYLTDLIHIIY----GESSVYGRVSKSYAARVGINNFLKGYLPAENM 243
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 24/208 (11%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCIS 314
L+ VS + G AL+G SG+GK+T+ ++ + +G+I + G+ + T +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 315 GY---CEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALV 371
+ QN +H N T+ ++ Y+A E Q + ME +E + + L
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQ--AHAMEFIE--NMPQGLD 471
Query: 372 GLPGLNG--LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD--- 426
+ G NG LS +R+R+ IA L+ + ++ +DE TS LD + R ++ +D
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE----RAIQAALDELQ 527
Query: 427 TGRTVLFLLKR-----GGQEIYVGPLGE 449
+TVL + R EI V GE
Sbjct: 528 KNKTVLVIAHRLSTIEQADEILVVDEGE 555
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 14/199 (7%)
Query: 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFT 311
L +L G++ R G + ++G SG+GK+T L L + G I I G K +
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTN 73
Query: 312 CIS-----GYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL 366
G Q P++TV ++ + P +V R+ + MEL++ L
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGL 128
Query: 367 RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD 426
+ P + LS + +R+ IA L P I+ DEPTS LD + ++ +
Sbjct: 129 KDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 427 TGRTVLFLLKRGGQEIYVG 445
G T++ + G VG
Sbjct: 187 EGMTMVVVTHEMGFAREVG 205
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 14/199 (7%)
Query: 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFT 311
L +L G++ R G + ++G SG+GK+T L L + G I I G K +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTN 94
Query: 312 CIS-----GYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL 366
G Q P++TV ++ + P +V R+ + MEL++ L
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGL 149
Query: 367 RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD 426
+ P + LS + +R+ IA L P I+ DEPTS LD + ++ +
Sbjct: 150 KDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 427 TGRTVLFLLKRGGQEIYVG 445
G T++ + G VG
Sbjct: 208 EGMTMVVVTHEMGFAREVG 226
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 10/193 (5%)
Query: 248 SEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ 307
S ++ +L G++ + G AL+G SG GK+T + ++ ++ + G ++I G +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRT 456
Query: 308 ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN 364
I G Q + T+ E++ Y E++ ++ + +++L
Sbjct: 457 INVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLP 513
Query: 365 TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNT 424
LVG G LS +++R+ IA LV NP I+ +DE TS LD + A+ ++ +
Sbjct: 514 HQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV-VQAALDK 571
Query: 425 VDTGRTVLFLLKR 437
GRT + + R
Sbjct: 572 AREGRTTIVIAHR 584
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 28/217 (12%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCI 313
+L G+S + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 314 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGL 373
+ E +L+ + +R + EE++ + + + + L
Sbjct: 1106 RAQL--------GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 374 P-------GLNG--LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNT 424
P G G LS +++R+ IA LV P I+ +DE TS LD + + + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 425 VDTGRTVLFLLKR-----GGQEIYV---GPLGEHSSH 453
GRT + + R I V G + EH +H
Sbjct: 1217 AREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTH 1253
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 10/193 (5%)
Query: 248 SEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ 307
S ++ +L G++ + G AL+G SG GK+T + ++ ++ + G ++I G +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRT 456
Query: 308 ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN 364
I G Q + T+ E++ Y E++ ++ + +++L
Sbjct: 457 INVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLP 513
Query: 365 TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNT 424
LVG G LS +++R+ IA LV NP I+ +DE TS LD + A+ ++ +
Sbjct: 514 HQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV-VQAALDK 571
Query: 425 VDTGRTVLFLLKR 437
GRT + + R
Sbjct: 572 AREGRTTIVIAHR 584
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 28/217 (12%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCI 313
+L G+S + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 314 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGL 373
+ E +L+ + +R + EE++ + + + + L
Sbjct: 1106 RAQL--------GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 374 P-------GLNG--LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNT 424
P G G LS +++R+ IA LV P I+ +DE TS LD + + + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 425 VDTGRTVLFLLKR-----GGQEIYV---GPLGEHSSH 453
GRT + + R I V G + EH +H
Sbjct: 1217 AREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTH 1253
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 57/236 (24%), Positives = 104/236 (44%), Gaps = 27/236 (11%)
Query: 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLA 286
I ++T + M +E+I L V+ + G ++MG SG+GK+T+L+++
Sbjct: 2 IKLKNVTKTYKMGEEII---------YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG 52
Query: 287 --GRKTSGYI-TGNIAISGYPKKQETFTCIS----GYCEQNDIHSPNVTVYESLLYSAWL 339
+ T G + NI + + T I G+ Q P +T E++
Sbjct: 53 CLDKPTEGEVYIDNIKTNDL--DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF 110
Query: 340 RLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSI 399
+ + + R+ E +++ EL + P N LS +++R+ IA L NP I
Sbjct: 111 KYRGAMSGEERRKRALECLKMAELE--ERFANHKP--NQLSGGQQQRVAIARALANNPPI 166
Query: 400 IFMDEPTSGLDARAAAIFMRTVRN-TVDTGRTVLFLLKRGGQEIYVGPLGEHSSHL 454
I D+PT LD++ M+ ++ + G+TV+ + +I V GE +L
Sbjct: 167 ILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVT----HDINVARFGERIIYL 218
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 11/176 (6%)
Query: 265 GVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY---PKKQETFTCISGYCEQND 321
G AL+G +G+GK+T+ +L + G+I I G + + I G Q+
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNVNKYNRNSIRSIIGIVPQDT 102
Query: 322 IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381
I N T+ ++LY EV T+ + + +E L +VG G+ LS
Sbjct: 103 ILF-NETIKYNILYGKLDATDEEVIKATKSAQLYDFIE--ALPKKWDTIVGNKGMK-LSG 158
Query: 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437
+R+R+ IA L+ +P I+ DE TS LD++ +F + V + + RT++ + R
Sbjct: 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHR 213
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGYITGNIAISGYPKK--QETF 310
L G++ + G +TA++G +G GK+TL G + +SG I + Y +K +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 311 TCISGYCEQNDIHSPNVTVYESLLYSAW-LRLPPE-----VDSQTRKMFIEEVMELVELN 364
I + D + +VY+ + + A ++LP + VD+ ++ IE + +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD----- 138
Query: 365 TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR 419
+ LS ++KR+ IA LV P ++ +DEPT+GLD + M+
Sbjct: 139 ---------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 265 GVLTALMGVSGAGKTTLLDVLAGRKT--SGYI-TGNIAISGYPKKQETFTCISGYCEQND 321
G +G SG GK+TLL ++AG +T SG + G ++ P + G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV----GMVFQSY 84
Query: 322 IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381
P+++V E++ + L + R + EV++L L RK LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKP-------KALSG 136
Query: 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR--TVRNTVDTGRTVLFL 434
+R+R+ I LVA PS+ +DEP S LDA A + MR R GRT++++
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYV 190
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 265 GVLTALMGVSGAGKTTLLDVLAGRKT--SGYI-TGNIAISGYPKKQETFTCISGYCEQND 321
G +G SG GK+TLL ++AG +T SG + G ++ P + G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV----GMVFQSY 84
Query: 322 IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381
P+++V E++ + L + R + EV++L L RK LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKP-------KALSG 136
Query: 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR--TVRNTVDTGRTVLFL 434
+R+R+ I LVA PS+ +DEP S LDA A + MR R GRT++++
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYV 190
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 270 LMGVSGAGKTTLLDVLAG--RKTSGYITGNIA-ISGYPKKQETFTCISGYCEQNDIHSPN 326
L+G +GAGK+ L+++AG + G + N A I+ P ++ G+ Q+ P+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGI----GFVPQDYALFPH 84
Query: 327 VTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKR 386
++VY ++ Y LR V+ R + E + + L + A LS +R+R
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR--------LSGGERQR 134
Query: 387 LTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVR 422
+ +A LV P ++ +DEP S +D + + M +R
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 247 VSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLA--GRKTSGYI-TGNIAISGY 303
+ E+ + L V+ + G ++MG SG+GK+T+L+++ + T G + NI +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL 72
Query: 304 PKKQETFTCIS----GYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVME 359
+ T I G+ Q P +T E++ + + + R+ E ++
Sbjct: 73 --DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK 130
Query: 360 LVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR 419
+ EL + P N LS +++R+ IA L NP II D+PT LD++ M+
Sbjct: 131 MAELE--ERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
Query: 420 TVRN-TVDTGRTVLFLLKRGGQEIYVGPLGEHSSHL 454
++ + G+TV+ + +I V GE +L
Sbjct: 187 LLKKLNEEDGKTVVVVT----HDINVARFGERIIYL 218
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 15/182 (8%)
Query: 248 SEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG----- 302
S D +L GV+ G + ALMG +GAGK+TL +LAG G I + G
Sbjct: 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILE 71
Query: 303 -YPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELV 361
P ++ + Q + P VT+ L + +L EV +++ +EL+
Sbjct: 72 LSPDERARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL 129
Query: 362 ELNT--LRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR 419
+ + L + L G S ++KR I LV P+ +DE SGLD A + R
Sbjct: 130 DWDESYLSRYLN-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184
Query: 420 TV 421
V
Sbjct: 185 GV 186
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 24/172 (13%)
Query: 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---------YITGNIAIS 301
++V L+ V+ G ++G SGAGKTT + ++AG + N +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 302 GYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYS-AWLRLPPEVDSQTRKMFIEEVMEL 360
P+ ++ G Q PN+T +E++ + +++ E + RK +EEV ++
Sbjct: 77 VPPEDRKI-----GMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKI 127
Query: 361 VELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
++++ + L P LS +++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 128 LDIHHV---LNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 265 GVLTALMGVSGAGKTTLLDVLAGRKT--SGYI-TGNIAISGYPKKQETFTCISGYCEQND 321
G +G SG GK+TLL ++AG +T SG + G ++ P + G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV----GMVFQSY 84
Query: 322 IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381
P+++V E++ + L + R + EV++L L RK LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKP-------KALSG 136
Query: 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR--TVRNTVDTGRTVLFL 434
+R+R+ I LVA PS+ +D+P S LDA A + MR R GRT++++
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYV 190
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 30/167 (17%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY------PKKQE 308
L+ +S G ++G +GAGKT L+++AG +G I + G P+K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLDGKDVTDLSPEKHD 73
Query: 309 TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRL---PPEVDSQTRKMFIEEVMELVELNT 365
+ QN P++ V ++L + ++ P V R + IE +++
Sbjct: 74 I-----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD------ 122
Query: 366 LRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
R L LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 123 -RNPLT-------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 12/173 (6%)
Query: 265 GVLTALMGVSGAGKTTLLDVLAG--RKTSGYITGN-IAISGYPKKQETFTCISGYCEQND 321
G + L+G +GAGKTT L +AG R G I N I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 322 IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381
I P +TVYE+L A+ R D + K +E + L L++ L L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNR----KDKEGIKRDLEWIFSL--FPRLKERLKQLGGT--LSG 142
Query: 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFL 434
+++ L I L + P ++ DEP+ GL + ++ G T+L +
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLV 195
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSGYIT--GNIAISGYPKKQET 309
+L G+S G + L+G +GAGKTT L +++ + +SG +T G + + E
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE---EPHEV 86
Query: 310 FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKA 369
IS E+ Y ++ +LR + + E+ E+VE T A
Sbjct: 87 RKLISYLPEE-------AGAYRNMQGIEYLRFVAGFYASSS----SEIEEMVERAT-EIA 134
Query: 370 LVGLPGLNGLSTEKR---KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD 426
+G + +ST + ++L IA L+ NP + +DEPTSGLD A + ++
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 427 TGRTVL 432
G T+L
Sbjct: 195 EGLTIL 200
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 23/166 (13%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG---------YP 304
+LN +S + PG + ++G SG GKTTLL LAG + +G I++SG P
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN 364
++ GY Q + P++TVY ++ Y L +Q R+ IE ++EL ++
Sbjct: 77 VRERRL----GYLVQEGVLFPHLTVYRNIAY--GLGNGKGRTAQERQR-IEAMLELTGIS 129
Query: 365 TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLD 410
L + LS +++R +A L +P +I +DEP S LD
Sbjct: 130 ELAGRYP-----HELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 24/172 (13%)
Query: 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---------YITGNIAIS 301
++V L+ V+ G ++G SGAGKTT + ++AG + N +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 302 GYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYS-AWLRLPPEVDSQTRKMFIEEVMEL 360
P+ ++ G Q PN+T +E++ + +++ E + RK +EEV ++
Sbjct: 77 VPPEDRKI-----GMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRKR-VEEVAKI 127
Query: 361 VELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412
++++ + L P LS +++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 128 LDIHHV---LNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 39/178 (21%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG-----------------YIT 295
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 296 GNIAISGYPKKQETFTCISGYC--EQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMF 353
G + P+ + T + E N SP SL Y W+ P+ + K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESP----LNSLFYKKWI---PKEEEMVEKAF 135
Query: 354 IEEVMELVELNTL--RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGL 409
+++E ++L+ L RKA LS + K + I L+ NP +I MDEP +G+
Sbjct: 136 --KILEFLKLSHLYDRKA-------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 39/178 (21%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG-----------------YIT 295
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 296 GNIAISGYPKKQETFTCISGYC--EQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMF 353
G + P+ + T + E N SP SL Y W+ P+ + K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESP----LNSLFYKKWI---PKEEEMVEKAF 135
Query: 354 IEEVMELVELNTL--RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGL 409
+++E ++L+ L RKA LS + K + I L+ NP +I MD+P +G+
Sbjct: 136 --KILEFLKLSHLYDRKA-------GELSGGQMKLVEIGRALMTNPKMIVMDQPIAGV 184
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 31/174 (17%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG--YITGNIAISGYPKKQETF 310
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y + P + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 311 TCISGYCEQNDIHS-------------PNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEV 357
+ + + P + SL Y W+ P+ + K F ++
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI---PKEEEMVEKAF--KI 137
Query: 358 MELVELNTL--RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGL 409
+E ++L+ L RKA LS + K + I L+ NP +I MDEP +G+
Sbjct: 138 LEFLKLSHLYDRKA-------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 220 LPFEPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKT 279
L F+ I F+++ +S +E L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFSYADGRET------------LQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 280 TLLDVLAGRKTSGYITGNIAISGYPKKQETFTCIS---GYCEQNDIHSPNVTVYESLLYS 336
T+L +L + +G I I G Q T + G Q+ + N T+ +++ Y
Sbjct: 95 TILRLLF--RFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-NDTIADNIRYG 151
Query: 337 AWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVAN 396
EV++ + I + ++ + VG GL LS +++R+ IA ++
Sbjct: 152 RVTAGNDEVEAAAQAAGIHDA--IMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKA 208
Query: 397 PSIIFMDEPTSGLD 410
P II +DE TS LD
Sbjct: 209 PGIILLDEATSALD 222
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 265 GVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCE--QNDI 322
G AL+G SG+GK+T+ ++ + G+I + G+ ++ T + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 323 HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG--LS 380
H N TV ++ Y+ E + +M M+ + N + L + G NG LS
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARM--AYAMDFI--NKMDNGLDTIIGENGVLLS 482
Query: 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD---TGRTVLFLLKR 437
+R+R+ IA L+ + I+ +DE TS LD + R ++ +D RT L + R
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDELQKNRTSLVIAHR 538
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 29/163 (17%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG---YPKKQETFT 311
LNG++ + G L A++G G GK++LL L + G++AI G Y +Q
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVAIKGSVAYVPQQAWI- 77
Query: 312 CISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL---RK 368
QND ++ E++L+ L P + I+ L +L L +
Sbjct: 78 -------QND------SLRENILFGCQLEEP------YYRSVIQACALLPDLEILPSGDR 118
Query: 369 ALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA 411
+G G+N LS +++R+++A + +N I D+P S +DA
Sbjct: 119 TEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 39/210 (18%)
Query: 247 VSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306
VS + +L G+S PG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 9 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG---- 64
Query: 307 QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELV----- 361
++ SP E + + + P E+ + + F++ + V
Sbjct: 65 KDLLAL-----------SPEDRAGEGIFMA--FQYPVEIPGVSNQFFLQTALNAVRSYRG 111
Query: 362 ----------ELNTLRKALVGLP------GLN-GLSTEKRKRLTIAVELVANPSIIFMDE 404
+L + AL+ +P +N G S ++KR I V P + +DE
Sbjct: 112 QETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 171
Query: 405 PTSGLDARAAAIFMRTVRNTVDTGRTVLFL 434
SGLD A + V + D R+ + +
Sbjct: 172 SDSGLDIDALKVVADGVNSLRDGKRSFIIV 201
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 21/177 (11%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG----YPKKQET 309
+L G+S + + G +++G SG+GK+TLL +L G + + G Y ++E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 310 FTCIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL 366
+ G+ Q P +T E+++ P+ +++ R ++ L EL L
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LSELG-L 130
Query: 367 RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA----RAAAIFMR 419
L P LS +++R+ IA L P ++F DEPT LD+ R IF++
Sbjct: 131 GDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 25/204 (12%)
Query: 265 GVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCE--QNDI 322
G AL+G SG+GK+T+ ++ + G I + G+ ++ T + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 323 HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG--LS 380
H N TV ++ Y+ + E + +M M+ + N + L + G NG LS
Sbjct: 427 HLFNDTVANNIAYARTEQYSREQIEEAARM--AYAMDFI--NKMDNGLDTVIGENGVLLS 482
Query: 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD---TGRTVLFLLKR 437
+R+R+ IA L+ + I+ +DE TS LD + R ++ +D RT L + R
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDELQKNRTSLVIAHR 538
Query: 438 -----GGQEIYV---GPLGEHSSH 453
EI V G + E +H
Sbjct: 539 LSTIEKADEIVVVEDGVIVERGTH 562
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 95/238 (39%), Gaps = 52/238 (21%)
Query: 219 VLPFEPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGK 278
++P H ++ D+ SV ED+ +L G+S PG + A+MG +G+GK
Sbjct: 13 LVPRGSHMLSIKDLHVSV------------EDK-AILRGLSLDVHPGEVHAIMGPNGSGK 59
Query: 279 TTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAW 338
+TL LAGR+ G + G ++ SP E + +
Sbjct: 60 STLSATLAGREDYEVTGGTVEFKG----KDLLAL-----------SPEDRAGEGIFMA-- 102
Query: 339 LRLPPEVDSQTRKMFIEEVMELV---------------ELNTLRKALVGLP------GLN 377
+ P E+ + + F++ + V +L + AL+ +P +N
Sbjct: 103 FQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN 162
Query: 378 -GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFL 434
G S ++KR I V P + +DE SGLD A + V + D R+ + +
Sbjct: 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 220
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDV--LAGRKTSGYITGNIAISGYPKKQETFTC 312
LN VS G + ++G SGAGK+TL+ L R T G++ + G + +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE----GSVLVDGQELTTLSESE 76
Query: 313 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVG 372
++ Q + + + S + LP E+D+ + V EL+ L L
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 136
Query: 373 LPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLD 410
P + LS +++R+ IA L +NP ++ DE TS LD
Sbjct: 137 YP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 15/149 (10%)
Query: 270 LMGVSGAGKTTLLDVLAGRK--TSGYIT------GNIAISGYPKKQETFTCISGYCEQND 321
L G++GAGKTTLL++L + TSG + G + S +Q E+
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEKFQ 111
Query: 322 IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381
+ V S + + + + ++D + R ++++LV + + +G LST
Sbjct: 112 EGERVIDVVISGAFKS-IGVYQDIDDEIRNE-AHQLLKLVGXSAKAQQYIGY-----LST 164
Query: 382 EKRKRLTIAVELVANPSIIFMDEPTSGLD 410
+++R+ IA L P ++ +DEP +GLD
Sbjct: 165 GEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 100/256 (39%), Gaps = 55/256 (21%)
Query: 222 FEPHSITFDDITYSVDMPQEMI--NPGVSEDQLVL-LNGVSGAFRPGVLTALMGVSGAGK 278
F P+ I F ++ VD+ +E + P + +D L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 279 TTLLDVLAG--RKTSGYITGNIAISGYPK--KQETFTCISGYCEQNDIHSPNVTVYESLL 334
TT + +LAG T G + ++ ++ P+ K E + + D N Y++ L
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 455
Query: 335 YSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELV 394
+++L + N + LS + +R+ IA L+
Sbjct: 456 LKPL-----------------GIIDLYDRN-----------VEDLSGGELQRVAIAATLL 487
Query: 395 ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKRGGQEIYVGPLGEHSSHL 454
+ I +DEP++ LD R +R+ ++ ++ EH +
Sbjct: 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-------------EHDVLM 534
Query: 455 IKY-------FEGIPG 463
I Y FEG PG
Sbjct: 535 IDYVSDRLIVFEGEPG 550
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 56/199 (28%)
Query: 263 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQND- 321
+ G++ ++G +G GKTT + +LAG+ I CE ND
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQ-----------------------LIPNLCEDNDS 151
Query: 322 -------IHSPNVTVYESLLYSAWLR----------LPPEVDSQTRKMF--IEEVMELVE 362
+ Y L + +R LP V + R++ ++EV + E
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEE 211
Query: 363 L-------NTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 415
+ N L + L + LS + +R+ IA L+ F DEP+S LD R
Sbjct: 212 VVKELELENVLDREL------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL 265
Query: 416 IFMRTVRNTVDTGRTVLFL 434
R +R + G+ VL +
Sbjct: 266 KVARVIRRLANEGKAVLVV 284
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 16/179 (8%)
Query: 263 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK------QETFTCISGY 316
+ G + ++G +G GK+T + +LAG+ N + G + Q F +
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 317 CEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVEL-NTLRKALVGLPG 375
+ + V + + + L + D + +EEV++ +EL N L +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLERE------ 155
Query: 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFL 434
+ LS + +R+ IA L+ N + F DEP+S LD R R +R + G++VL +
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 104/251 (41%), Gaps = 45/251 (17%)
Query: 222 FEPHSITFDDITYSVDMPQEMINPGVSEDQLV------LLNGVSGAFRPGVLTALMGVSG 275
F P+ I F V++ +E + V+ +LV L G + G + ++G +G
Sbjct: 266 FRPYEIKFTKTGERVEIERETL---VTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNG 322
Query: 276 AGKTTLLDVLAG--RKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESL 333
GKTT + LAG T G I ++ ++ P+ Y + + YE
Sbjct: 323 IGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YIKAD---------YEGT 363
Query: 334 LYSAWLRLPP-EVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVE 392
+Y ++ +++S K + + + +++L +N LS + +R+ IA
Sbjct: 364 VYELLSKIDASKLNSNFYKTELLKPLGIIDLYDRE--------VNELSGGELQRVAIAAT 415
Query: 393 LVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKRGGQEIYVGPLGEHSS 452
L+ + I +DEP++ LD R +R+ + +++ I ++ S
Sbjct: 416 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXI------DYVS 469
Query: 453 HLIKYFEGIPG 463
+ FEG PG
Sbjct: 470 DRLXVFEGEPG 480
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDV--LAGRKTSGYITGNIAISGYPKKQETFTC 312
LN VS G + ++G SGAGK+TL+ L R T G++ + G + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE----GSVLVDGQELTTLSESE 99
Query: 313 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVG 372
++ Q + + + S + LP E+D+ + V EL+ L L
Sbjct: 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 373 LPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLD 410
P + LS +++R+ IA L +NP ++ D+ TS LD
Sbjct: 160 YP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDV--LAGRKTSGYITGNIAISGYPKKQETFTC 312
LN VS G + ++G SGAGK+TL+ L R T G++ + G QE T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE----GSVLVDG----QELTTL 95
Query: 313 ISGYCEQNDIHSPNVTVYESLLYS----AWLRLPPEVDSQTRKMFIEEVMELVELNTLRK 368
+ + + +LL S + LP E+D+ + V EL+ L L
Sbjct: 96 SESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 155
Query: 369 ALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLD 410
P + LS +++R+ IA L +NP ++ D+ TS LD
Sbjct: 156 KHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 94/210 (44%), Gaps = 32/210 (15%)
Query: 210 ANHHQKRGMVLPFEPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTA 269
A + LP S++F+++ + E +P +L+GV+ + +PG L A
Sbjct: 325 AIEEADNALALPNVEGSVSFENVEFRY---FENTDP--------VLSGVNFSVKPGSLVA 373
Query: 270 LMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTV 329
++G +G+GK+TL++++ + G + + + + G+ +
Sbjct: 374 VLGETGSGKSTLMNLIP--RLIDPERGRVEVDELDVRTVKLKDLRGHI--------SAVP 423
Query: 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLP---------GLNGLS 380
E++L+S ++ + +E++E ++ + ++ LP G S
Sbjct: 424 QETVLFSGTIK--ENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481
Query: 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLD 410
+++RL+IA LV P ++ +D+ TS +D
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 42/197 (21%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--------------RKTSGYITGNIAI 300
L VS G + G +G+GK+TLL ++AG RK I NI I
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 84
Query: 301 S-GYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVME 359
+ YP+ Q + E+ V++ + + A P+ D +++ ME
Sbjct: 85 AFQYPEDQ-------FFAER---------VFDEVAF-AVKNFYPDRDPVP---LVKKAME 124
Query: 360 LV--ELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIF 417
V + ++ + + LS +++R+ IA +V P I+ +DEP GLD
Sbjct: 125 FVGLDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL 179
Query: 418 MRTVRNTVDTGRTVLFL 434
+R V G+TV+ +
Sbjct: 180 LRIVEKWKTLGKTVILI 196
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 42/197 (21%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG--------------RKTSGYITGNIAI 300
L VS G + G +G+GK+TLL ++AG RK I NI I
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82
Query: 301 S-GYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVME 359
+ YP+ Q + E+ V++ + + A P+ D +++ ME
Sbjct: 83 AFQYPEDQ-------FFAER---------VFDEVAF-AVKNFYPDRDPVP---LVKKAME 122
Query: 360 LV--ELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIF 417
V + ++ + + LS +++R+ IA +V P I+ +DEP GLD
Sbjct: 123 FVGLDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL 177
Query: 418 MRTVRNTVDTGRTVLFL 434
+R V G+TV+ +
Sbjct: 178 LRIVEKWKTLGKTVILI 194
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 100/256 (39%), Gaps = 55/256 (21%)
Query: 222 FEPHSITFDDITYSVDMPQEMI--NPGVSEDQLVL-LNGVSGAFRPGVLTALMGVSGAGK 278
F P+ I F ++ VD+ +E + P + +D L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 279 TTLLDVLAG--RKTSGYITGNIAISGYPK--KQETFTCISGYCEQNDIHSPNVTVYESLL 334
TT + +LAG T G + ++ ++ P+ K E + + D N Y++ L
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 441
Query: 335 YSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELV 394
+++L + N + LS + +R+ IA L+
Sbjct: 442 LKPL-----------------GIIDLYDRN-----------VEDLSGGELQRVAIAATLL 473
Query: 395 ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKRGGQEIYVGPLGEHSSHL 454
+ I +DEP++ LD R +R+ ++ ++ EH +
Sbjct: 474 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-------------EHDVLM 520
Query: 455 IKY-------FEGIPG 463
I Y FEG PG
Sbjct: 521 IDYVSDRLIVFEGEPG 536
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 56/199 (28%)
Query: 263 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQND- 321
+ G++ ++G +G GKTT + +LAG+ I CE ND
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQ-----------------------LIPNLCEDNDS 137
Query: 322 -------IHSPNVTVYESLLYSAWLR----------LPPEVDSQTRKMF--IEEVMELVE 362
+ Y L + +R LP V + R++ ++EV + E
Sbjct: 138 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEE 197
Query: 363 L-------NTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 415
+ N L + L + LS + +R+ IA L+ F DEP+S LD R
Sbjct: 198 VVKELELENVLDREL------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL 251
Query: 416 IFMRTVRNTVDTGRTVLFL 434
R +R + G+ VL +
Sbjct: 252 KVARVIRRLANEGKAVLVV 270
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 48/185 (25%)
Query: 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGYITGNIAISGYPKKQETF 310
+++L G++ RPG +TAL+G +G+GK+T+ +L + +G G + + G P Q
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG---GQLLLDGKPLPQY-- 84
Query: 311 TCISGYCEQNDIH--------SPNV---TVYESLLYSAWLRLPPEVDSQTRKMFIEEVME 359
E +H P V ++ E++ Y T+K +EE+
Sbjct: 85 -------EHRYLHRQVAAVGQEPQVFGRSLQENIAYGL-----------TQKPTMEEITA 126
Query: 360 LVELNTLRKALVGLPGLNGLSTE-----------KRKRLTIAVELVANPSIIFMDEPTSG 408
+ + GLP G TE +R+ + +A L+ P ++ +D+ TS
Sbjct: 127 AAVKSGAHSFISGLP--QGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSA 184
Query: 409 LDARA 413
LDA +
Sbjct: 185 LDANS 189
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY---PKKQETF 310
+L ++ +PG AL+G +G+GKTT++++L + G I + G K+ +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 311 TCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKAL 370
G Q+ I + TV E+L Y P D EE+ E +L +
Sbjct: 428 RSSIGIVLQDTILF-STTVKENLKYGN----PGATD--------EEIKEAAKLTHSDHFI 474
Query: 371 VGLP-------GLNG--LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARA 413
LP NG LS +R+ L I +ANP I+ +DE TS +D +
Sbjct: 475 KHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKRG 438
LS +++R++IA L P ++ DEPTS LD +R ++ + G+T++ +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 439 GQEIYVGPLGEHSSHLIKYFEG 460
G +V SSH+I +G
Sbjct: 214 GFARHV------SSHVIFLHQG 229
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 18/214 (8%)
Query: 249 EDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLA--GRKTSGYI-TGNIAISGYPK 305
E+ + L V+ + G ++ G SG+GK+T L+++ + T G + NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDL-- 72
Query: 306 KQETFTCIS----GYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELV 361
+ T I G+ Q P +T E++ + + R+ E ++
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXA 132
Query: 362 ELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTV 421
EL + P N LS +++R+ IA L NP II DEPT LD++ + +
Sbjct: 133 ELE--ERFANHKP--NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLL 188
Query: 422 RN-TVDTGRTVLFLLKRGGQEIYVGPLGEHSSHL 454
+ + G+TV+ + +I V GE +L
Sbjct: 189 KKLNEEDGKTVVVVT----HDINVARFGERIIYL 218
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 22/164 (13%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCIS 314
L +SG R G + L+G +GAGK+TLL AG TSG G+I +G P + + T ++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 315 GYCEQNDIHSPNVTVYESLLYSA--WLRLPPEVDSQTRKMFIEEVMELVEL-NTLRKALV 371
+H ++ ++ ++ W L +TR + +V + L + L ++
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 372 GLPGLNGLSTEKRKRLTIAVELV---ANPS--IIFMDEPTSGLD 410
L G +R RL V + ANP+ ++ +DEP + LD
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD 165
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 22/164 (13%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCIS 314
L +SG R G + L+G +GAGK+TLL AG TSG G+I +G P + + T ++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 315 GYCEQNDIHSPNVTVYESLLYSA--WLRLPPEVDSQTRKMFIEEVMELVEL-NTLRKALV 371
+H ++ ++ ++ W L +TR + +V + L + L ++
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 372 GLPGLNGLSTEKRKRLTIAVELV---ANPS--IIFMDEPTSGLD 410
L G +R RL V + ANP+ ++ +DEP + LD
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD 165
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 25/193 (12%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGYITGNIAISGYPKKQETFTC 312
+L G++ PG +TAL+G +G+GK+T+ +L + +G G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDGEPLVQ----- 85
Query: 313 ISGYCEQNDIHSPNVTV-YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALV 371
+ + +H+ V E LL+ R TR +EE+ + + +
Sbjct: 86 ----YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFIS 140
Query: 372 GLPG---------LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVR 422
G P N LS +R+ + +A L+ P ++ +D+ TS LDA R +
Sbjct: 141 GFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLY 200
Query: 423 NTVD-TGRTVLFL 434
+ + RTVL +
Sbjct: 201 ESPEWASRTVLLI 213
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 22/164 (13%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCIS 314
L +SG R G + L+G +GAGK+TLL +AG TSG G+I +G P + + T ++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 315 GYCEQNDIHSPNVTVYESLLYSA--WLRLPPEVDSQTRKMFIEEVMELVEL-NTLRKALV 371
+H ++ ++ ++ W L +TR + +V + L + L ++
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 372 GLPGLNGLSTEKRKRLTIAVELV---ANPS--IIFMDEPTSGLD 410
L G +R RL V + ANP+ ++ +D+P + LD
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLD 165
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 32/219 (14%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGYITGNIAISGYPKKQETFTC 312
+L G++ PG +TAL+G +G+GK+T+ +L + +G G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDGEPLVQ----- 85
Query: 313 ISGYCEQNDIHSPNVTV-YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALV 371
+ + +H+ V E LL+ R TR +EE+ + + +
Sbjct: 86 ----YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFIS 140
Query: 372 GLPG---------LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVR 422
G P N LS +R+ + +A L+ P ++ +D TS LDA R +
Sbjct: 141 GFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLY 200
Query: 423 NTVD-TGRTVLFLLKRGGQEIYVGPLGEHSSHLIKYFEG 460
+ + RTVL + ++ L E + H++ EG
Sbjct: 201 ESPEWASRTVLLITQQLS-------LAERAHHILFLKEG 232
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 22/164 (13%)
Query: 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCIS 314
L +SG R G + L+G +GAGK+TLL +AG TSG G+I +G P + + T ++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSATKLA 72
Query: 315 GYCEQNDIHSPNVTVYESLLYSA--WLRLPPEVDSQTRKMFIEEVMELVEL-NTLRKALV 371
+H ++ ++ ++ W L +TR + +V + L + L ++
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125
Query: 372 GLPGLNGLSTEKRKRLTIAVELV---ANPS--IIFMDEPTSGLD 410
L G +R RL V + ANP+ ++ +D+P LD
Sbjct: 126 QLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLD 165
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 32/219 (14%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGYITGNIAISGYPKKQETFTC 312
+L G++ PG +TAL+G +G+GK+T+ +L + +G G + + G P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG---GKVLLDGEPLVQ----- 85
Query: 313 ISGYCEQNDIHSPNVTV-YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALV 371
+ + +H+ V E LL+ R TR +EE+ + + +
Sbjct: 86 ----YDHHYLHTQVAAVGQEPLLFGRSFR-ENIAYGLTRTPTMEEITAVAMESGAHDFIS 140
Query: 372 GLPG---------LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVR 422
G P N L+ +R+ + +A L+ P ++ +D TS LDA R +
Sbjct: 141 GFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLY 200
Query: 423 NTVD-TGRTVLFLLKRGGQEIYVGPLGEHSSHLIKYFEG 460
+ + RTVL + ++ L E + H++ EG
Sbjct: 201 ESPEWASRTVLLITQQLS-------LAERAHHILFLKEG 232
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLL-D 283
SI I SVD +++ G E L G+ +F GVLT++ GVSG+GK+TL+ D
Sbjct: 631 ESIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVND 687
Query: 284 VLA 286
+LA
Sbjct: 688 ILA 690
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 27/159 (16%)
Query: 270 LMGVSGAGKTTLLDVLAGRKTSGYI--TGNIAISGYPKKQETFTCISGYCEQNDIHSPNV 327
++G +G+GKTTLL R SG + +GNI I+G ++ I Y +S N+
Sbjct: 35 ILGPNGSGKTTLL-----RAISGLLPYSGNIFINGMEVRK-----IRNYIR----YSTNL 80
Query: 328 -TVYE-SLLYSAWLRLPPEVDSQTRKMFIE--EVMELVELNTLRKALVGLPGLNGLSTEK 383
YE + + + L E+ R +F+E + ++L E LR+ L L G S
Sbjct: 81 PEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE-EILRRKLYKLSA--GQSVLV 137
Query: 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVR 422
R L +A + P I+ +DEP +DA + R ++
Sbjct: 138 RTSLALA----SQPEIVGLDEPFENVDAARRHVISRYIK 172
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 28/159 (17%)
Query: 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTC 312
+LLN + + G +G GK+TL+ +A N + G+P ++E C
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA----------NGQVDGFPTQEE---C 495
Query: 313 ISGYCEQN-DIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALV 371
+ Y E + D + +V + + S T++ ++++E ++
Sbjct: 496 RTVYVEHDIDGTHSDTSVLDFVFESGV---------GTKEAIKDKLIEF----GFTDEMI 542
Query: 372 GLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLD 410
+P ++ LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 543 AMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 348 QTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTS 407
Q R + +E+ E + L +V + GLS ++ +L +A P +I +DEPT+
Sbjct: 871 QFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 930
Query: 408 GLDARAAAIFMRTVR 422
LD + + ++
Sbjct: 931 YLDRDSLGALSKALK 945
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 245 PGVSEDQLVLLN-GVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR--KTSG--YITGNIA 299
PG S+ Q+ +N S + R A++G +GAGK+TL++VL G TSG Y N
Sbjct: 682 PGTSKPQITDINFQCSLSSR----IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCR 737
Query: 300 ISGYPKKQETFTCISGYCEQ 319
I+ KQ F I + ++
Sbjct: 738 IAYI--KQHAFAHIESHLDK 755
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 35.8 bits (81), Expect = 0.095, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
Query: 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG----YITGNIAISGYPKK 306
Q L+N VS G + A++G +GAGK+TLL +L G + ++ G S PK
Sbjct: 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKA 82
Query: 307 -QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT 365
T + Y E + P +V E + + P SQ R+ +++VM +
Sbjct: 83 LARTRAVMRQYSE---LAFP-FSVSEVI----QMGRAPYGGSQDRQA-LQQVMAQTDCLA 133
Query: 366 LRKALVGLPGLNGLSTEKRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIFMR 419
L + LS +++R+ +A L P +F+DEPTS LD +R
Sbjct: 134 LAQR-----DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR 188
Query: 420 TVR 422
+R
Sbjct: 189 LLR 191
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 85/217 (39%), Gaps = 46/217 (21%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCI 313
+LN G F + +MG +G GKTTL+ +LAG
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--------------------- 405
Query: 314 SGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEV--------MELVELNT 365
E DI NV++ ++ P+ R++F +++ + +
Sbjct: 406 ----EGQDIPKLNVSMKPQ-------KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKP 454
Query: 366 LRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTV 425
LR + + LS + +R+ I + L I +DEP++ LD+ I + +R +
Sbjct: 455 LRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI 514
Query: 426 DTGRTVLFLLKRGGQEIYVGPLGEHSSHLIKYFEGIP 462
+ F+++ ++ + + + + FEGIP
Sbjct: 515 LHNKKTAFIVEHD----FI--MATYLADKVIVFEGIP 545
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 263 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIA-ISGYPKKQETFTCISGYCEQN- 320
RPG + L+G +G GK+T L +LAG++ N+ P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKP-----NLGRFDDPPEWQEIIKYFRGSELQNY 155
Query: 321 -------DIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVE--LNTLRKALV 371
DI + Y + A ++ P + + K+ +E+ E V+ + L+ V
Sbjct: 156 FTKMLEDDIKAIIKPQYVDNIPRA-IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENV 214
Query: 372 GLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARA---AAIFMRTV 421
+ LS + +R I + V + DEP+S LD + AA +R++
Sbjct: 215 LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 415
LS ++R+ IA+ L+ +P ++ +DEPTS LD A
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQA 191
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 347 SQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE----KRKRLTIAVELVANP---SI 399
+ F +E L+TLR+ +G L +TE + +R+ +A EL + ++
Sbjct: 695 DEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTV 754
Query: 400 IFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVL 432
+DEPT+GL R + VD G TV+
Sbjct: 755 YVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 379 LSTEKRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFL 434
LS + +R+ +A EL ++ +DEPT+GL A + + VD G TVL +
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 904
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 379 LSTEKRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFL 434
LS + +R+ +A EL ++ +DEPT+GL A + + VD G TVL +
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 904
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 21/171 (12%)
Query: 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCI 313
+L ++ G + G +G GKTTLL ++ + G I +G P T +
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVP-----ITKV 76
Query: 314 SG---YCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKAL 370
G + + I ++V + L A L + K I + +E VE+ L+K
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLKKK- 130
Query: 371 VGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTV 421
L LS +R+ +A L+ N I +D+P +D + ++++
Sbjct: 131 -----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 379 LSTEKRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFL 434
LS + +R+ +A EL ++ +DEPT+GL A + + VD G TVL +
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 602
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 245 PGVSEDQLVLLN-GVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR--KTSG--YITGNIA 299
PG S+ Q+ +N S + R A++G +GAGK+TL++VL G TSG Y N
Sbjct: 676 PGTSKPQITDINFQCSLSSR----IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCR 731
Query: 300 ISGYPKKQETFTCISGYCEQ 319
I+ KQ F I + ++
Sbjct: 732 IAYI--KQHAFAHIESHLDK 749
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 348 QTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTS 407
Q R + +E+ E L +V + GLS ++ +L +A P +I +DEPT+
Sbjct: 865 QFRPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 924
Query: 408 GLDARAAAIFMRTVR 422
LD + + ++
Sbjct: 925 YLDRDSLGALSKALK 939
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 245 PGVSEDQLVLLNGVSGAFRPGVLT--ALMGVSGAGKTTLLDVLAGR--KTSG--YITGNI 298
PG S+ Q+ +N F+ + + A++G +GAGK+TL++VL G TSG Y N
Sbjct: 682 PGTSKPQITDIN-----FQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC 736
Query: 299 AISGYPKKQETFTCISGYCEQ 319
I+ KQ F I + ++
Sbjct: 737 RIAYI--KQHAFAHIESHLDK 755
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 348 QTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTS 407
Q R + +E+ E L +V + GLS ++ +L +A P +I +DEPT+
Sbjct: 871 QFRPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 930
Query: 408 GLDARAAAIFMRTVR 422
LD + + ++
Sbjct: 931 YLDRDSLGALSKALK 945
>pdb|2UWH|A Chain A, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|B Chain B, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|C Chain C, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|D Chain D, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|E Chain E, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|F Chain F, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
Length = 458
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 503 YRRNKELIKDLSKPAHGSKDLHFATQYAQSFFTQCMVCLWKQHWSYWRNPSYNAVRFLFT 562
Y ++ LIK+ + K+L A ++ + FF + W H W+ ++N + F+
Sbjct: 51 YLSSQRLIKEACDESRFDKNLSQALKFVRDFFGDGLFTSWT-HEKNWKK-AHNILLPSFS 108
Query: 563 TVIALAFGTMFWDIGTKITKKQDLFNA 589
+ M DI ++ +K + NA
Sbjct: 109 QQAMKGYHAMMVDIAVQLVQKWERLNA 135
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 379 LSTEKRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFL 434
LS + +R+ +A ++ + + I +DEPT GL R ++T++ D G TV+ +
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522
>pdb|1XFB|A Chain A, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
pdb|1XFB|B Chain B, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
pdb|1XFB|C Chain C, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
pdb|1XFB|D Chain D, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
pdb|1XFB|E Chain E, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
pdb|1XFB|F Chain F, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
pdb|1XFB|G Chain G, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
pdb|1XFB|H Chain H, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
pdb|1XFB|I Chain I, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
pdb|1XFB|J Chain J, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
pdb|1XFB|K Chain K, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
pdb|1XFB|L Chain L, Human Brain Fructose 1,6-(Bis)phosphate Aldolase (C
Isozyme)
Length = 365
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 379 LSTEKRKRLT-IAVELVA-NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436
LS E++K L+ IA+ +VA I+ DE + R + I + R VLF
Sbjct: 8 LSAEQKKELSDIALRIVAPGKGILAADESVGSMAKRLSQIGVENTEENRRLYRQVLFSAD 67
Query: 437 RGGQEIYVGPLGEHSSHLIKYFEGIPGVSTIKD 469
++ G + H + K G+P V TI+D
Sbjct: 68 DRVKKCIGGVIFFHETLYQKDDNGVPFVRTIQD 100
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 258 VSGAFRPGVLTALMGVSGAGKTTL---LDVLAGRKTS 291
+ G F PGVLT + G +GKTTL +L+G+K +
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVA 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,325,148
Number of Sequences: 62578
Number of extensions: 942320
Number of successful extensions: 2334
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2145
Number of HSP's gapped (non-prelim): 159
length of query: 829
length of database: 14,973,337
effective HSP length: 107
effective length of query: 722
effective length of database: 8,277,491
effective search space: 5976348502
effective search space used: 5976348502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)