Query 044554
Match_columns 829
No_of_seqs 545 out of 4794
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 3E-158 6E-163 1405.3 56.4 795 1-804 508-1384(1391)
2 PLN03140 ABC transporter G fam 100.0 9E-142 2E-146 1342.8 80.9 804 1-804 586-1467(1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 1E-128 3E-133 1227.9 77.6 786 2-804 470-1391(1394)
4 PLN03211 ABC transporter G-25; 100.0 4.5E-95 1E-99 862.2 59.2 562 224-803 37-658 (659)
5 KOG0061 Transporter, ABC super 100.0 2.8E-95 6E-100 855.8 55.9 563 223-805 22-610 (613)
6 TIGR00955 3a01204 The Eye Pigm 100.0 1.1E-94 2.3E-99 858.4 56.9 545 250-804 36-614 (617)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-92 2.5E-97 899.2 60.7 573 223-805 26-696 (1394)
8 PLN03140 ABC transporter G fam 100.0 8.7E-91 1.9E-95 879.0 56.7 576 223-805 128-791 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 1.5E-83 3.2E-88 766.2 38.6 546 250-805 126-732 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 2.7E-44 5.8E-49 358.5 21.9 201 226-448 2-221 (240)
11 COG1135 AbcC ABC-type metal io 100.0 4.2E-41 9E-46 351.4 20.3 205 227-449 2-228 (339)
12 COG1120 FepC ABC-type cobalami 100.0 6.1E-41 1.3E-45 350.3 20.8 213 226-458 2-236 (258)
13 COG1116 TauB ABC-type nitrate/ 100.0 6.8E-41 1.5E-45 343.7 20.5 187 226-437 3-190 (248)
14 COG1131 CcmA ABC-type multidru 100.0 1.7E-40 3.8E-45 359.7 24.0 207 226-459 4-229 (293)
15 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.1E-40 6.7E-45 343.3 23.8 203 226-449 4-224 (254)
16 COG3638 ABC-type phosphate/pho 100.0 1.6E-40 3.4E-45 335.5 19.9 206 226-451 3-236 (258)
17 COG1127 Ttg2A ABC-type transpo 100.0 2.1E-40 4.5E-45 335.4 20.6 215 225-461 7-248 (263)
18 TIGR01257 rim_protein retinal- 100.0 6.7E-36 1.5E-40 381.4 64.0 408 9-447 671-1144(2272)
19 COG1125 OpuBA ABC-type proline 100.0 2.9E-40 6.2E-45 335.5 18.6 200 227-449 2-222 (309)
20 COG1136 SalX ABC-type antimicr 100.0 1.2E-39 2.5E-44 334.5 21.9 192 227-437 2-202 (226)
21 COG3839 MalK ABC-type sugar tr 100.0 7.5E-40 1.6E-44 354.4 21.3 200 226-449 3-220 (338)
22 COG1117 PstB ABC-type phosphat 100.0 1.1E-39 2.3E-44 324.0 20.2 204 225-448 6-233 (253)
23 COG3842 PotA ABC-type spermidi 100.0 2.5E-39 5.4E-44 352.1 21.9 203 225-449 4-223 (352)
24 COG2884 FtsE Predicted ATPase 100.0 2.6E-39 5.7E-44 315.9 18.3 188 227-436 2-195 (223)
25 COG1118 CysA ABC-type sulfate/ 100.0 7.7E-39 1.7E-43 333.6 17.5 202 226-449 2-224 (345)
26 COG4555 NatA ABC-type Na+ tran 100.0 5.5E-39 1.2E-43 316.0 15.2 200 227-449 2-219 (245)
27 PRK13537 nodulation ABC transp 100.0 1.1E-37 2.4E-42 340.5 24.6 200 225-448 6-223 (306)
28 cd03261 ABC_Org_Solvent_Resist 100.0 1.8E-37 4E-42 326.5 23.5 188 227-436 1-195 (235)
29 TIGR02314 ABC_MetN D-methionin 100.0 2.2E-37 4.8E-42 341.6 24.8 203 227-448 2-226 (343)
30 PRK11650 ugpC glycerol-3-phosp 100.0 2.2E-37 4.8E-42 344.0 24.4 202 226-449 3-221 (356)
31 TIGR03265 PhnT2 putative 2-ami 100.0 3.4E-37 7.3E-42 342.2 24.6 200 226-449 4-221 (353)
32 PRK11432 fbpC ferric transport 100.0 6.2E-37 1.3E-41 339.5 25.1 200 226-449 6-223 (351)
33 TIGR00960 3a0501s02 Type II (G 100.0 6.5E-37 1.4E-41 318.1 23.1 190 227-437 2-197 (216)
34 TIGR03258 PhnT 2-aminoethylpho 100.0 7.3E-37 1.6E-41 340.1 24.5 200 226-449 5-225 (362)
35 PRK13536 nodulation factor exp 100.0 1E-36 2.3E-41 336.6 25.5 200 225-448 40-257 (340)
36 cd03259 ABC_Carb_Solutes_like 100.0 1.1E-36 2.4E-41 315.7 23.5 188 227-437 1-190 (213)
37 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-36 2.6E-41 317.1 23.5 188 227-437 1-191 (220)
38 PRK10851 sulfate/thiosulfate t 100.0 1.4E-36 3E-41 337.2 24.7 203 226-449 2-223 (353)
39 PRK09452 potA putrescine/sperm 100.0 1.7E-36 3.8E-41 338.3 25.0 200 226-448 14-230 (375)
40 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.1E-36 6.7E-41 314.0 25.1 190 227-437 1-191 (220)
41 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.5E-36 3.3E-41 315.7 22.7 192 227-437 1-200 (218)
42 COG1137 YhbG ABC-type (unclass 100.0 6.6E-38 1.4E-42 308.1 11.4 202 226-449 4-225 (243)
43 cd03301 ABC_MalK_N The N-termi 100.0 2.8E-36 6E-41 312.6 24.1 188 227-437 1-190 (213)
44 COG0410 LivF ABC-type branched 100.0 8.9E-37 1.9E-41 308.6 19.2 199 226-449 3-223 (237)
45 cd03219 ABC_Mj1267_LivG_branch 100.0 2.4E-36 5.2E-41 318.0 23.3 190 227-436 1-201 (236)
46 cd03296 ABC_CysA_sulfate_impor 100.0 3.7E-36 8.1E-41 317.4 24.8 191 226-436 2-195 (239)
47 cd03269 ABC_putative_ATPase Th 100.0 3.2E-36 6.9E-41 311.6 23.7 187 227-437 1-187 (210)
48 PRK11000 maltose/maltodextrin 100.0 2.5E-36 5.4E-41 337.5 24.5 201 226-449 3-220 (369)
49 cd03218 ABC_YhbG The ABC trans 100.0 3.2E-36 7E-41 316.2 23.9 198 227-447 1-217 (232)
50 COG1122 CbiO ABC-type cobalt t 100.0 1.2E-36 2.5E-41 317.6 20.0 200 226-447 3-223 (235)
51 TIGR01288 nodI ATP-binding ABC 100.0 3.5E-36 7.5E-41 328.6 24.5 199 226-447 4-219 (303)
52 PRK11607 potG putrescine trans 100.0 4.6E-36 1E-40 335.4 25.8 200 226-449 19-236 (377)
53 cd03266 ABC_NatA_sodium_export 100.0 3.7E-36 8E-41 312.8 23.2 192 227-437 2-195 (218)
54 PRK11629 lolD lipoprotein tran 100.0 6.8E-36 1.5E-40 314.2 25.4 193 226-437 5-205 (233)
55 PRK11153 metN DL-methionine tr 100.0 5.1E-36 1.1E-40 332.2 25.3 203 227-448 2-226 (343)
56 cd03260 ABC_PstB_phosphate_tra 100.0 4.3E-36 9.2E-41 314.4 22.8 188 227-436 1-198 (227)
57 cd03256 ABC_PhnC_transporter A 100.0 3.5E-36 7.5E-41 317.7 21.7 202 227-447 1-229 (241)
58 cd03268 ABC_BcrA_bacitracin_re 100.0 5.2E-36 1.1E-40 309.6 22.4 184 227-437 1-185 (208)
59 cd03292 ABC_FtsE_transporter F 100.0 6.7E-36 1.4E-40 309.9 23.1 189 227-437 1-195 (214)
60 TIGR02673 FtsE cell division A 100.0 6.4E-36 1.4E-40 310.1 22.9 189 227-437 2-196 (214)
61 COG1124 DppF ABC-type dipeptid 100.0 4.2E-36 9.1E-41 305.7 20.7 190 226-436 3-200 (252)
62 TIGR01188 drrA daunorubicin re 100.0 3.2E-36 6.9E-41 328.7 21.4 187 250-447 4-208 (302)
63 COG3840 ThiQ ABC-type thiamine 100.0 1.8E-36 3.9E-41 293.7 17.1 197 227-448 2-215 (231)
64 PRK09536 btuD corrinoid ABC tr 100.0 6.1E-36 1.3E-40 335.9 24.0 204 226-449 3-225 (402)
65 PRK09493 glnQ glutamine ABC tr 100.0 9E-36 1.9E-40 314.6 23.9 199 227-447 2-220 (240)
66 TIGR03522 GldA_ABC_ATP gliding 100.0 8.4E-36 1.8E-40 325.2 24.0 198 226-448 2-217 (301)
67 cd03258 ABC_MetN_methionine_tr 100.0 8.7E-36 1.9E-40 313.2 23.1 191 227-436 2-199 (233)
68 cd03263 ABC_subfamily_A The AB 100.0 8.3E-36 1.8E-40 310.6 22.7 188 227-436 1-190 (220)
69 TIGR01186 proV glycine betaine 100.0 6.1E-36 1.3E-40 332.0 22.9 190 250-449 4-216 (363)
70 PRK11264 putative amino-acid A 100.0 1.2E-35 2.5E-40 315.6 23.4 188 227-436 4-202 (250)
71 cd03224 ABC_TM1139_LivF_branch 100.0 9.7E-36 2.1E-40 310.4 21.8 185 227-436 1-190 (222)
72 cd03294 ABC_Pro_Gly_Bertaine T 100.0 8E-36 1.7E-40 320.4 21.6 177 250-436 35-219 (269)
73 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.9E-35 4E-40 312.7 23.8 188 227-436 1-194 (242)
74 TIGR02315 ABC_phnC phosphonate 100.0 7.1E-36 1.5E-40 315.8 20.5 191 227-436 2-204 (243)
75 PRK10895 lipopolysaccharide AB 100.0 2E-35 4.4E-40 312.1 23.8 200 226-447 3-221 (241)
76 cd03262 ABC_HisP_GlnQ_permease 100.0 1.4E-35 3.1E-40 307.2 21.9 189 227-437 1-194 (213)
77 TIGR02211 LolD_lipo_ex lipopro 100.0 1.8E-35 4E-40 308.2 22.9 192 227-437 2-201 (221)
78 PRK11831 putative ABC transpor 100.0 2.4E-35 5.3E-40 316.7 24.4 189 226-436 7-202 (269)
79 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.1E-35 6.8E-40 309.8 24.5 187 227-436 2-191 (236)
80 PRK13637 cbiO cobalt transport 100.0 1.7E-35 3.7E-40 320.7 23.1 204 226-447 2-229 (287)
81 cd03226 ABC_cobalt_CbiO_domain 100.0 8.3E-36 1.8E-40 307.4 19.5 183 229-437 2-185 (205)
82 KOG0058 Peptide exporter, ABC 100.0 1.9E-36 4.1E-41 346.5 16.0 202 224-447 463-686 (716)
83 cd03225 ABC_cobalt_CbiO_domain 100.0 1.4E-35 3.1E-40 306.8 20.7 188 229-437 2-193 (211)
84 PRK13650 cbiO cobalt transport 100.0 2.1E-35 4.6E-40 318.7 22.4 202 226-447 4-224 (279)
85 TIGR03608 L_ocin_972_ABC putat 100.0 2E-35 4.3E-40 304.6 21.2 185 230-437 2-193 (206)
86 PRK13647 cbiO cobalt transport 100.0 3.4E-35 7.4E-40 316.3 23.9 200 226-447 4-222 (274)
87 PRK10908 cell division protein 100.0 3.8E-35 8.3E-40 306.2 23.5 189 227-437 2-196 (222)
88 PRK11124 artP arginine transpo 100.0 3.8E-35 8.3E-40 310.2 23.6 188 226-436 2-199 (242)
89 PRK11248 tauB taurine transpor 100.0 7.3E-35 1.6E-39 310.5 25.7 186 227-437 2-188 (255)
90 cd03257 ABC_NikE_OppD_transpor 100.0 4E-35 8.7E-40 306.9 23.1 194 227-437 2-205 (228)
91 TIGR00972 3a0107s01c2 phosphat 100.0 4.8E-35 1E-39 310.5 23.7 199 227-447 2-227 (247)
92 cd03264 ABC_drug_resistance_li 100.0 3.7E-35 8.1E-40 303.8 22.3 186 227-437 1-188 (211)
93 cd03234 ABCG_White The White s 100.0 2.9E-35 6.3E-40 308.0 21.7 197 227-437 4-202 (226)
94 COG0411 LivG ABC-type branched 100.0 8.5E-36 1.8E-40 303.7 16.8 202 227-449 5-236 (250)
95 PRK10619 histidine/lysine/argi 100.0 6.1E-35 1.3E-39 311.5 24.2 189 226-436 5-210 (257)
96 cd03235 ABC_Metallic_Cations A 100.0 2E-35 4.3E-40 306.3 19.3 187 229-437 2-191 (213)
97 PRK13634 cbiO cobalt transport 100.0 3.7E-35 8E-40 318.5 22.3 203 227-447 3-230 (290)
98 PRK13644 cbiO cobalt transport 100.0 4.3E-35 9.4E-40 315.5 22.7 199 227-447 2-219 (274)
99 COG4559 ABC-type hemin transpo 100.0 1.9E-35 4E-40 293.3 18.0 210 227-458 2-238 (259)
100 TIGR01257 rim_protein retinal- 100.0 3.4E-34 7.4E-39 365.8 34.5 208 226-458 1937-2161(2272)
101 PRK13651 cobalt transporter AT 100.0 4.6E-35 9.9E-40 319.5 22.9 205 226-448 2-250 (305)
102 PRK11300 livG leucine/isoleuci 100.0 9E-35 1.9E-39 309.7 24.4 202 226-447 5-238 (255)
103 PRK13635 cbiO cobalt transport 100.0 7E-35 1.5E-39 314.6 23.7 201 226-447 5-224 (279)
104 TIGR01166 cbiO cobalt transpor 100.0 4.3E-35 9.2E-40 298.5 20.8 177 251-437 4-186 (190)
105 COG4525 TauB ABC-type taurine 100.0 1.5E-35 3.3E-40 289.9 16.7 189 226-437 3-192 (259)
106 PRK13636 cbiO cobalt transport 100.0 6.7E-35 1.4E-39 315.5 23.4 201 226-448 5-227 (283)
107 PRK13538 cytochrome c biogenes 100.0 6.3E-35 1.4E-39 300.7 22.1 185 227-437 2-188 (204)
108 PRK15079 oligopeptide ABC tran 100.0 1.3E-34 2.9E-39 318.9 26.0 215 226-448 8-247 (331)
109 TIGR03740 galliderm_ABC gallid 100.0 1.5E-34 3.2E-39 302.0 24.9 182 227-436 1-182 (223)
110 PRK11247 ssuB aliphatic sulfon 100.0 9.3E-35 2E-39 309.8 23.6 181 226-437 12-193 (257)
111 PRK11614 livF leucine/isoleuci 100.0 6.7E-35 1.4E-39 307.4 22.2 186 226-436 5-195 (237)
112 TIGR03411 urea_trans_UrtD urea 100.0 1.3E-34 2.7E-39 306.2 24.2 189 227-436 3-200 (242)
113 PRK13646 cbiO cobalt transport 100.0 6.7E-35 1.4E-39 316.0 22.6 203 226-447 2-230 (286)
114 PRK13643 cbiO cobalt transport 100.0 7.7E-35 1.7E-39 315.7 23.1 203 227-448 2-229 (288)
115 PRK09984 phosphonate/organopho 100.0 9.6E-35 2.1E-39 310.9 23.5 205 226-448 4-238 (262)
116 TIGR03005 ectoine_ehuA ectoine 100.0 1.4E-34 3E-39 307.8 24.5 188 227-436 1-205 (252)
117 PRK14247 phosphate ABC transpo 100.0 9.9E-35 2.1E-39 308.5 23.3 191 226-436 3-203 (250)
118 PRK13631 cbiO cobalt transport 100.0 1.4E-34 3E-39 317.6 24.8 203 226-447 21-260 (320)
119 PRK10584 putative ABC transpor 100.0 1.4E-34 2.9E-39 303.2 23.4 193 226-437 6-206 (228)
120 TIGR01189 ccmA heme ABC export 100.0 9.2E-35 2E-39 298.1 21.6 185 227-438 1-187 (198)
121 PRK14268 phosphate ABC transpo 100.0 1.4E-34 3.1E-39 308.8 23.7 199 226-447 12-237 (258)
122 PRK13632 cbiO cobalt transport 100.0 1.2E-34 2.6E-39 311.6 23.2 192 225-437 6-202 (271)
123 PRK14273 phosphate ABC transpo 100.0 1.4E-34 3E-39 308.3 23.3 200 226-447 7-233 (254)
124 PRK13549 xylose transporter AT 100.0 1.2E-34 2.5E-39 338.1 24.7 206 226-449 5-229 (506)
125 PRK13539 cytochrome c biogenes 100.0 8.8E-35 1.9E-39 300.4 21.0 185 226-437 2-186 (207)
126 PRK13548 hmuV hemin importer A 100.0 1.3E-34 2.9E-39 309.1 23.0 198 227-447 3-225 (258)
127 TIGR03410 urea_trans_UrtE urea 100.0 1.4E-34 3.1E-39 303.5 22.7 196 227-448 1-217 (230)
128 PRK14267 phosphate ABC transpo 100.0 1.6E-34 3.4E-39 307.6 23.2 195 226-436 4-206 (253)
129 PRK13641 cbiO cobalt transport 100.0 1.7E-34 3.7E-39 312.9 23.9 204 226-447 2-229 (287)
130 cd03231 ABC_CcmA_heme_exporter 100.0 9.9E-35 2.1E-39 298.7 20.8 182 227-437 1-184 (201)
131 COG2274 SunT ABC-type bacterio 100.0 1.8E-35 3.9E-40 350.6 17.5 201 222-447 467-691 (709)
132 PRK13638 cbiO cobalt transport 100.0 1.6E-34 3.4E-39 310.7 23.2 198 227-447 2-220 (271)
133 PRK11231 fecE iron-dicitrate t 100.0 1.4E-34 3.1E-39 308.3 22.2 203 226-448 2-223 (255)
134 PRK13649 cbiO cobalt transport 100.0 1.9E-34 4.1E-39 311.5 23.3 203 226-447 2-229 (280)
135 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.2E-34 4.8E-39 298.1 22.7 186 227-437 1-188 (211)
136 TIGR01978 sufC FeS assembly AT 100.0 2E-34 4.4E-39 304.6 22.8 194 227-437 1-203 (243)
137 PRK14242 phosphate transporter 100.0 3.4E-34 7.3E-39 305.0 24.5 194 225-436 5-206 (253)
138 TIGR02769 nickel_nikE nickel i 100.0 2.5E-34 5.4E-39 308.2 23.6 197 227-436 3-209 (265)
139 PRK14245 phosphate ABC transpo 100.0 3.4E-34 7.5E-39 304.4 24.4 204 226-447 3-229 (250)
140 PRK10575 iron-hydroxamate tran 100.0 1.9E-34 4.1E-39 309.1 22.6 203 226-448 11-233 (265)
141 PRK10070 glycine betaine trans 100.0 1.7E-34 3.7E-39 324.0 23.1 189 250-448 39-250 (400)
142 cd03233 ABC_PDR_domain1 The pl 100.0 2.2E-34 4.8E-39 296.3 22.2 172 226-437 3-178 (202)
143 PRK13540 cytochrome c biogenes 100.0 1.9E-34 4.1E-39 296.3 21.5 183 227-437 2-186 (200)
144 PRK10744 pstB phosphate transp 100.0 2.9E-34 6.2E-39 306.9 23.6 192 223-436 10-213 (260)
145 PRK13639 cbiO cobalt transport 100.0 3E-34 6.4E-39 309.2 23.8 199 227-447 2-221 (275)
146 PRK13652 cbiO cobalt transport 100.0 2.6E-34 5.7E-39 309.9 23.4 200 227-448 4-223 (277)
147 PRK09473 oppD oligopeptide tra 100.0 3.8E-34 8.2E-39 315.4 25.0 211 226-449 12-248 (330)
148 PRK14241 phosphate transporter 100.0 3.2E-34 6.9E-39 306.2 23.7 190 226-436 4-205 (258)
149 PRK10253 iron-enterobactin tra 100.0 2.2E-34 4.7E-39 308.6 22.2 204 225-448 6-229 (265)
150 PRK11022 dppD dipeptide transp 100.0 7.3E-34 1.6E-38 312.8 26.3 210 226-448 3-239 (326)
151 PRK14256 phosphate ABC transpo 100.0 8.7E-34 1.9E-38 301.7 25.8 205 226-447 4-231 (252)
152 PRK13640 cbiO cobalt transport 100.0 2.7E-34 5.9E-39 310.5 22.1 203 226-447 5-227 (282)
153 TIGR02868 CydC thiol reductant 100.0 6.8E-35 1.5E-39 342.1 18.6 187 225-437 333-528 (529)
154 TIGR03873 F420-0_ABC_ATP propo 100.0 3.1E-34 6.8E-39 305.8 22.1 202 227-448 2-222 (256)
155 TIGR00968 3a0106s01 sulfate AB 100.0 6E-34 1.3E-38 300.3 23.8 198 227-447 1-215 (237)
156 PRK11308 dppF dipeptide transp 100.0 5.9E-34 1.3E-38 313.5 24.6 212 226-449 5-241 (327)
157 PRK13648 cbiO cobalt transport 100.0 5.1E-34 1.1E-38 306.4 23.6 201 226-447 7-226 (269)
158 PRK13633 cobalt transporter AT 100.0 3.4E-34 7.4E-39 309.5 22.3 205 226-447 4-228 (280)
159 PRK13543 cytochrome c biogenes 100.0 4.3E-34 9.4E-39 296.8 22.1 186 226-437 11-196 (214)
160 COG4152 ABC-type uncharacteriz 100.0 1.2E-34 2.6E-39 292.9 17.1 198 226-448 2-215 (300)
161 cd03300 ABC_PotA_N PotA is an 100.0 8E-34 1.7E-38 298.3 24.2 188 227-437 1-190 (232)
162 cd03267 ABC_NatA_like Similar 100.0 5.6E-34 1.2E-38 300.4 23.0 178 250-437 32-213 (236)
163 PRK14237 phosphate transporter 100.0 9.2E-34 2E-38 304.1 24.9 196 223-436 17-220 (267)
164 PRK14235 phosphate transporter 100.0 9.5E-34 2.1E-38 304.0 25.0 194 226-436 19-220 (267)
165 TIGR01277 thiQ thiamine ABC tr 100.0 7.3E-34 1.6E-38 294.7 23.3 186 227-437 1-188 (213)
166 PRK10771 thiQ thiamine transpo 100.0 6.1E-34 1.3E-38 299.2 23.0 196 227-447 2-214 (232)
167 COG4988 CydD ABC-type transpor 100.0 2E-34 4.4E-39 324.4 20.6 199 223-447 317-538 (559)
168 PRK14269 phosphate ABC transpo 100.0 8.3E-34 1.8E-38 300.9 23.8 194 226-436 2-199 (246)
169 TIGR03415 ABC_choXWV_ATP choli 100.0 4.6E-34 1E-38 318.4 22.6 191 249-449 34-251 (382)
170 PRK13642 cbiO cobalt transport 100.0 6.1E-34 1.3E-38 307.1 22.8 202 226-447 4-224 (277)
171 PRK14250 phosphate ABC transpo 100.0 5.3E-34 1.2E-38 301.4 21.9 184 226-437 3-191 (241)
172 PRK09700 D-allose transporter 100.0 5.7E-34 1.2E-38 332.7 24.1 204 226-449 5-231 (510)
173 PRK10762 D-ribose transporter 100.0 7.4E-34 1.6E-38 331.0 24.8 204 226-449 4-227 (501)
174 COG4604 CeuD ABC-type enteroch 100.0 4E-35 8.6E-40 287.6 11.9 202 227-449 2-222 (252)
175 TIGR02982 heterocyst_DevA ABC 100.0 8.1E-34 1.8E-38 295.9 22.5 193 227-437 2-201 (220)
176 PRK15093 antimicrobial peptide 100.0 1.7E-33 3.6E-38 310.7 25.9 212 226-448 3-244 (330)
177 PRK13547 hmuV hemin importer A 100.0 6E-34 1.3E-38 306.0 21.7 204 227-448 2-240 (272)
178 PRK13645 cbiO cobalt transport 100.0 9.6E-34 2.1E-38 307.4 23.4 193 226-436 6-209 (289)
179 PRK14270 phosphate ABC transpo 100.0 1.1E-33 2.4E-38 300.8 23.3 200 226-447 4-230 (251)
180 PRK14274 phosphate ABC transpo 100.0 1.1E-33 2.3E-38 302.3 23.1 204 226-447 12-238 (259)
181 cd03299 ABC_ModC_like Archeal 100.0 2E-33 4.3E-38 295.9 24.6 186 227-436 1-188 (235)
182 TIGR02142 modC_ABC molybdenum 100.0 9.8E-34 2.1E-38 315.4 23.3 180 257-448 15-217 (354)
183 PRK11174 cysteine/glutathione 100.0 2.5E-34 5.5E-39 341.4 19.7 186 225-437 348-543 (588)
184 PRK11144 modC molybdate transp 100.0 9.5E-34 2.1E-38 315.2 23.0 177 257-449 16-215 (352)
185 PRK14239 phosphate transporter 100.0 1.4E-33 3.1E-38 299.9 23.3 193 226-436 5-205 (252)
186 PRK14240 phosphate transporter 100.0 2.3E-33 5E-38 298.1 24.7 193 226-436 3-203 (250)
187 cd03297 ABC_ModC_molybdenum_tr 100.0 1.4E-33 3.1E-38 292.7 22.5 168 257-437 16-191 (214)
188 PRK14262 phosphate ABC transpo 100.0 1.8E-33 3.9E-38 298.9 23.8 193 226-436 3-203 (250)
189 PRK15112 antimicrobial peptide 100.0 1.3E-33 2.8E-38 303.0 22.7 199 226-437 4-209 (267)
190 KOG0057 Mitochondrial Fe/S clu 100.0 1.7E-34 3.8E-39 320.1 16.1 187 224-437 349-545 (591)
191 TIGR02633 xylG D-xylose ABC tr 100.0 1.7E-33 3.6E-38 328.1 25.0 205 227-449 2-227 (500)
192 PRK14244 phosphate ABC transpo 100.0 1.8E-33 4E-38 299.0 23.1 193 227-436 6-206 (251)
193 PRK14259 phosphate ABC transpo 100.0 1.5E-33 3.2E-38 302.9 22.5 192 225-436 12-211 (269)
194 PRK14260 phosphate ABC transpo 100.0 2E-33 4.3E-38 300.2 23.3 186 226-433 7-204 (259)
195 PRK14249 phosphate ABC transpo 100.0 2.6E-33 5.7E-38 297.8 24.0 193 226-436 4-204 (251)
196 PRK14272 phosphate ABC transpo 100.0 2.2E-33 4.8E-38 298.5 23.4 190 226-436 4-205 (252)
197 KOG0055 Multidrug/pheromone ex 100.0 1.3E-34 2.7E-39 348.2 15.4 203 223-449 347-573 (1228)
198 PRK14253 phosphate ABC transpo 100.0 3E-33 6.4E-38 297.0 24.2 193 226-436 3-202 (249)
199 PRK11701 phnK phosphonate C-P 100.0 2.6E-33 5.6E-38 299.2 23.6 189 226-436 6-210 (258)
200 PRK15056 manganese/iron transp 100.0 2E-33 4.4E-38 302.3 22.7 204 226-448 6-226 (272)
201 TIGR01184 ntrCD nitrate transp 100.0 1.6E-33 3.4E-38 295.8 21.3 173 255-437 1-174 (230)
202 PRK10247 putative ABC transpor 100.0 1.8E-33 4E-38 294.3 21.7 186 226-437 7-197 (225)
203 PRK14236 phosphate transporter 100.0 4.2E-33 9.1E-38 299.8 25.0 193 225-435 24-224 (272)
204 COG4598 HisP ABC-type histidin 100.0 1.7E-34 3.6E-39 278.9 12.5 201 226-448 6-237 (256)
205 PRK15439 autoinducer 2 ABC tra 100.0 2.1E-33 4.5E-38 327.8 24.0 197 226-449 11-226 (510)
206 TIGR02324 CP_lyasePhnL phospho 100.0 2.7E-33 6E-38 292.5 22.4 195 227-437 2-208 (224)
207 COG1132 MdlB ABC-type multidru 100.0 3.2E-34 6.9E-39 339.1 17.3 200 224-447 326-547 (567)
208 COG0444 DppD ABC-type dipeptid 100.0 2.7E-33 5.8E-38 297.0 22.4 210 227-449 2-240 (316)
209 PRK14261 phosphate ABC transpo 100.0 3.2E-33 7E-38 297.5 23.1 193 226-436 6-206 (253)
210 PRK14258 phosphate ABC transpo 100.0 4.3E-33 9.4E-38 297.9 24.2 194 226-436 7-209 (261)
211 PRK14271 phosphate ABC transpo 100.0 4.3E-33 9.3E-38 300.2 23.9 204 226-447 21-246 (276)
212 cd03232 ABC_PDR_domain2 The pl 100.0 2.8E-33 6E-38 285.9 20.9 165 226-437 3-167 (192)
213 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.2E-33 2.5E-38 341.3 21.3 195 225-447 450-668 (686)
214 PRK14248 phosphate ABC transpo 100.0 8.2E-33 1.8E-37 296.9 25.1 189 226-436 21-221 (268)
215 PRK14251 phosphate ABC transpo 100.0 7.1E-33 1.5E-37 294.5 24.4 189 226-436 4-204 (251)
216 PRK10418 nikD nickel transport 100.0 4.8E-33 1E-37 296.4 23.1 188 225-436 3-199 (254)
217 PRK13541 cytochrome c biogenes 100.0 4E-33 8.8E-38 285.3 21.5 181 227-437 2-182 (195)
218 cd03252 ABCC_Hemolysin The ABC 100.0 1E-33 2.2E-38 298.3 17.5 185 227-436 1-195 (237)
219 CHL00131 ycf16 sulfate ABC tra 100.0 1.1E-32 2.3E-37 293.3 25.2 194 226-436 7-209 (252)
220 COG4181 Predicted ABC-type tra 100.0 1.1E-33 2.4E-38 271.6 15.6 193 226-437 6-206 (228)
221 PRK11176 lipid transporter ATP 100.0 2.7E-33 5.9E-38 332.3 22.7 189 225-437 340-538 (582)
222 PRK14257 phosphate ABC transpo 100.0 8.5E-33 1.8E-37 304.4 24.9 207 225-448 79-309 (329)
223 PRK14275 phosphate ABC transpo 100.0 8.1E-33 1.7E-37 299.6 24.2 189 226-436 39-239 (286)
224 PRK10982 galactose/methyl gala 100.0 4.1E-33 8.9E-38 324.1 23.4 200 230-449 2-220 (491)
225 PRK10790 putative multidrug tr 100.0 1.3E-33 2.8E-38 335.6 19.6 186 225-437 339-534 (592)
226 PRK10419 nikE nickel transport 100.0 7.5E-33 1.6E-37 297.2 23.6 198 226-436 3-210 (268)
227 PRK14255 phosphate ABC transpo 100.0 9.6E-33 2.1E-37 293.6 24.2 193 226-436 5-205 (252)
228 PRK14238 phosphate transporter 100.0 5.9E-33 1.3E-37 298.5 22.7 192 226-436 24-224 (271)
229 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7E-33 1.5E-37 289.8 22.5 169 250-437 33-201 (224)
230 PRK14246 phosphate ABC transpo 100.0 7E-33 1.5E-37 295.6 22.9 190 226-436 10-210 (257)
231 PRK14254 phosphate ABC transpo 100.0 2E-32 4.3E-37 296.4 26.5 188 225-436 38-237 (285)
232 COG4161 ArtP ABC-type arginine 100.0 1.8E-33 3.9E-38 267.3 15.7 200 226-447 2-225 (242)
233 PRK14266 phosphate ABC transpo 100.0 1E-32 2.2E-37 293.1 23.3 204 226-447 3-229 (250)
234 PRK11288 araG L-arabinose tran 100.0 6.2E-33 1.3E-37 323.3 23.4 191 226-436 4-198 (501)
235 cd03230 ABC_DR_subfamily_A Thi 100.0 6.1E-33 1.3E-37 278.6 19.8 152 227-437 1-154 (173)
236 PRK14265 phosphate ABC transpo 100.0 1.3E-32 2.8E-37 296.4 23.6 190 224-433 18-215 (274)
237 cd03251 ABCC_MsbA MsbA is an e 100.0 1.6E-33 3.4E-38 296.2 16.1 185 227-436 1-195 (234)
238 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.8E-33 3.9E-38 341.0 19.0 196 225-447 476-695 (710)
239 PRK14263 phosphate ABC transpo 100.0 1.7E-32 3.8E-37 293.3 24.2 191 224-434 6-204 (261)
240 COG4175 ProV ABC-type proline/ 100.0 1.6E-33 3.5E-38 293.9 15.6 190 250-449 39-251 (386)
241 PRK11160 cysteine/glutathione 100.0 2.9E-33 6.4E-38 330.9 20.0 188 225-437 337-533 (574)
242 TIGR02323 CP_lyasePhnK phospho 100.0 2E-32 4.2E-37 291.5 23.9 189 226-436 3-207 (253)
243 COG4987 CydC ABC-type transpor 100.0 1.6E-33 3.4E-38 312.4 16.0 198 226-448 336-557 (573)
244 TIGR02770 nickel_nikD nickel i 100.0 6.9E-33 1.5E-37 290.9 20.1 175 254-436 1-184 (230)
245 TIGR01193 bacteriocin_ABC ABC- 100.0 3.5E-33 7.7E-38 338.3 20.5 197 225-447 472-692 (708)
246 cd03213 ABCG_EPDR ABCG transpo 100.0 9.4E-33 2E-37 282.5 20.2 166 226-437 3-170 (194)
247 TIGR03375 type_I_sec_LssB type 100.0 5.8E-33 1.3E-37 335.7 21.8 198 225-447 462-683 (694)
248 PRK14243 phosphate transporter 100.0 1.3E-32 2.9E-37 294.7 22.0 190 226-435 10-207 (264)
249 KOG0055 Multidrug/pheromone ex 100.0 1.1E-32 2.3E-37 331.7 23.5 202 224-447 985-1208(1228)
250 cd03254 ABCC_Glucan_exporter_l 100.0 3.7E-33 8.1E-38 292.4 17.2 186 226-436 2-196 (229)
251 TIGR00958 3a01208 Conjugate Tr 100.0 2.5E-33 5.5E-38 338.9 17.6 197 225-447 477-697 (711)
252 cd03245 ABCC_bacteriocin_expor 100.0 7.6E-33 1.6E-37 288.3 18.6 188 226-437 2-198 (220)
253 COG1123 ATPase components of v 100.0 1.7E-32 3.8E-37 310.2 22.5 212 225-447 279-514 (539)
254 PRK10261 glutathione transport 100.0 2.4E-32 5.2E-37 325.5 24.7 213 226-449 313-550 (623)
255 PRK14264 phosphate ABC transpo 100.0 8.9E-32 1.9E-36 294.0 27.0 195 225-435 44-256 (305)
256 TIGR03269 met_CoM_red_A2 methy 100.0 1.8E-32 4E-37 320.8 23.1 198 227-447 1-253 (520)
257 cd03229 ABC_Class3 This class 100.0 1.3E-32 2.7E-37 277.6 18.8 154 227-437 1-160 (178)
258 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 5.9E-33 1.3E-37 292.7 16.9 186 227-436 1-196 (238)
259 TIGR02857 CydD thiol reductant 100.0 9.9E-33 2.1E-37 323.8 20.1 188 225-437 319-516 (529)
260 TIGR01842 type_I_sec_PrtD type 100.0 6.8E-33 1.5E-37 326.1 18.5 189 225-437 315-513 (544)
261 PRK09580 sufC cysteine desulfu 100.0 3E-32 6.6E-37 289.0 21.7 192 227-437 2-204 (248)
262 PRK14252 phosphate ABC transpo 100.0 8.9E-32 1.9E-36 288.4 25.1 194 224-436 14-218 (265)
263 cd03253 ABCC_ATM1_transporter 100.0 1E-32 2.2E-37 290.4 17.3 185 227-437 1-195 (236)
264 cd03248 ABCC_TAP TAP, the Tran 100.0 7.5E-33 1.6E-37 289.7 16.1 194 225-437 10-208 (226)
265 PRK15134 microcin C ABC transp 100.0 2.6E-32 5.7E-37 320.0 22.1 200 226-436 275-484 (529)
266 PRK13546 teichoic acids export 100.0 9.2E-32 2E-36 287.8 24.2 203 225-447 3-227 (264)
267 PRK13657 cyclic beta-1,2-gluca 100.0 2.8E-32 6E-37 323.9 22.0 187 225-437 333-529 (588)
268 PRK15134 microcin C ABC transp 100.0 6.5E-32 1.4E-36 316.7 24.1 207 226-448 5-242 (529)
269 PRK03695 vitamin B12-transport 100.0 5.4E-32 1.2E-36 287.4 21.3 182 254-447 11-217 (248)
270 cd03244 ABCC_MRP_domain2 Domai 100.0 3.3E-32 7.1E-37 283.8 19.3 187 226-437 2-197 (221)
271 PRK10261 glutathione transport 100.0 5.1E-32 1.1E-36 322.7 23.4 205 226-448 12-254 (623)
272 PRK13549 xylose transporter AT 100.0 3.9E-32 8.4E-37 317.0 21.9 195 226-436 259-463 (506)
273 COG1123 ATPase components of v 100.0 9.4E-32 2E-36 304.3 24.1 209 226-449 5-241 (539)
274 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.8E-32 6.1E-37 293.0 18.8 197 226-448 2-221 (275)
275 TIGR03269 met_CoM_red_A2 methy 100.0 5.6E-32 1.2E-36 316.7 22.6 192 226-436 279-486 (520)
276 cd03246 ABCC_Protease_Secretio 100.0 3.3E-32 7.3E-37 273.3 17.7 152 227-437 1-155 (173)
277 PRK09700 D-allose transporter 100.0 3.6E-32 7.7E-37 317.6 20.6 190 226-437 265-468 (510)
278 PRK09544 znuC high-affinity zi 100.0 6.7E-32 1.5E-36 287.0 20.6 174 226-437 4-180 (251)
279 TIGR02203 MsbA_lipidA lipid A 100.0 4E-32 8.7E-37 321.6 20.5 189 225-437 329-527 (571)
280 cd03215 ABC_Carb_Monos_II This 100.0 7E-32 1.5E-36 273.2 19.3 153 226-437 4-163 (182)
281 COG1129 MglA ABC-type sugar tr 100.0 1.3E-31 2.8E-36 301.3 23.3 213 226-458 8-242 (500)
282 TIGR01846 type_I_sec_HlyB type 100.0 3.3E-32 7.2E-37 329.0 19.9 189 224-437 453-651 (694)
283 COG3845 ABC-type uncharacteriz 100.0 2E-31 4.3E-36 293.9 23.6 237 226-482 4-262 (501)
284 cd03247 ABCC_cytochrome_bd The 100.0 5.5E-32 1.2E-36 272.9 17.6 154 227-437 1-156 (178)
285 COG0396 sufC Cysteine desulfur 100.0 2.4E-31 5.3E-36 268.0 22.0 215 226-461 3-238 (251)
286 COG1119 ModF ABC-type molybden 100.0 6.4E-32 1.4E-36 275.3 17.5 193 224-437 29-232 (257)
287 PRK10789 putative multidrug tr 100.0 5.3E-32 1.2E-36 320.0 19.7 188 225-437 312-509 (569)
288 PRK10938 putative molybdenum t 100.0 5.6E-32 1.2E-36 314.5 19.0 192 226-448 3-220 (490)
289 TIGR02204 MsbA_rel ABC transpo 100.0 5.6E-32 1.2E-36 320.7 19.1 189 225-437 336-534 (576)
290 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-31 2.3E-36 312.9 21.0 196 226-437 257-462 (500)
291 PTZ00265 multidrug resistance 100.0 1.8E-32 4E-37 349.9 15.7 192 225-437 1164-1418(1466)
292 KOG0056 Heavy metal exporter H 100.0 1.4E-32 3E-37 298.3 11.9 205 220-446 531-755 (790)
293 TIGR01192 chvA glucan exporter 100.0 1.4E-31 3E-36 317.2 21.3 187 225-437 333-529 (585)
294 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.7E-31 5.8E-36 274.3 20.6 175 226-437 6-183 (207)
295 COG4136 ABC-type uncharacteriz 100.0 1.2E-31 2.7E-36 252.2 16.2 189 227-437 3-194 (213)
296 cd03290 ABCC_SUR1_N The SUR do 100.0 2.3E-31 5E-36 277.0 20.2 184 228-437 2-201 (218)
297 TIGR03771 anch_rpt_ABC anchore 100.0 2E-31 4.4E-36 278.5 19.6 180 260-448 1-197 (223)
298 PRK13545 tagH teichoic acids e 100.0 6E-31 1.3E-35 298.9 24.3 192 226-447 21-227 (549)
299 PRK11288 araG L-arabinose tran 100.0 1.8E-31 4E-36 310.9 20.6 190 253-449 267-482 (501)
300 cd03250 ABCC_MRP_domain1 Domai 100.0 2.6E-31 5.7E-36 273.7 19.1 177 227-437 1-187 (204)
301 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.9E-31 6.2E-36 272.8 18.8 159 227-437 1-163 (200)
302 cd03288 ABCC_SUR2 The SUR doma 100.0 1.4E-31 3E-36 285.7 16.6 198 224-447 17-238 (257)
303 COG4619 ABC-type uncharacteriz 100.0 3.9E-32 8.4E-37 260.2 10.8 177 250-438 14-194 (223)
304 PLN03232 ABC transporter C fam 100.0 1.8E-31 3.9E-36 343.5 20.2 197 225-447 1233-1453(1495)
305 cd03223 ABCD_peroxisomal_ALDP 100.0 4.7E-31 1E-35 263.3 18.4 147 227-437 1-147 (166)
306 COG4148 ModC ABC-type molybdat 100.0 5.2E-32 1.1E-36 278.2 11.6 176 257-449 16-215 (352)
307 PRK10762 D-ribose transporter 100.0 5.9E-31 1.3E-35 306.7 21.3 176 254-436 267-453 (501)
308 cd03214 ABC_Iron-Siderophores_ 100.0 3.4E-31 7.3E-36 267.7 16.1 152 229-437 2-157 (180)
309 COG4172 ABC-type uncharacteriz 100.0 1.6E-30 3.4E-35 278.4 21.9 215 223-448 273-512 (534)
310 PLN03130 ABC transporter C fam 100.0 3.4E-31 7.3E-36 341.3 20.2 199 225-449 1236-1458(1622)
311 cd03228 ABCC_MRP_Like The MRP 100.0 4.5E-31 9.7E-36 264.6 16.5 151 227-437 1-154 (171)
312 PRK10535 macrolide transporter 100.0 2.7E-30 5.8E-35 309.0 25.9 205 226-449 4-229 (648)
313 COG4618 ArpD ABC-type protease 100.0 2.1E-31 4.5E-36 293.0 14.7 217 217-459 325-563 (580)
314 PRK10522 multidrug transporter 100.0 1E-30 2.3E-35 307.7 19.9 185 225-437 321-509 (547)
315 cd03216 ABC_Carb_Monos_I This 100.0 1.8E-30 4E-35 258.2 18.4 137 227-437 1-141 (163)
316 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-30 3.6E-35 303.4 20.5 176 254-436 278-461 (510)
317 TIGR00957 MRP_assoc_pro multi 100.0 1.7E-30 3.6E-35 335.0 21.3 198 225-448 1283-1504(1522)
318 PTZ00243 ABC transporter; Prov 100.0 2.3E-30 5.1E-35 333.1 21.6 197 225-447 1307-1528(1560)
319 TIGR01187 potA spermidine/putr 100.0 3E-30 6.5E-35 284.3 18.5 170 270-449 1-187 (325)
320 PRK10938 putative molybdenum t 100.0 2.6E-30 5.6E-35 300.6 19.0 192 226-437 260-461 (490)
321 PRK10982 galactose/methyl gala 100.0 6.1E-30 1.3E-34 297.5 20.0 190 226-437 250-450 (491)
322 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.9E-30 1.1E-34 302.3 19.2 190 225-437 336-530 (555)
323 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.8E-29 6E-34 270.8 23.3 174 223-436 36-217 (282)
324 cd03237 ABC_RNaseL_inhibitor_d 100.0 7.7E-30 1.7E-34 270.3 18.6 161 254-437 9-175 (246)
325 PRK15064 ABC transporter ATP-b 100.0 9.3E-30 2E-34 298.6 21.2 180 227-437 2-211 (530)
326 PTZ00265 multidrug resistance 100.0 3.4E-30 7.4E-35 329.2 18.8 198 226-437 382-639 (1466)
327 PRK11819 putative ABC transpor 100.0 1.2E-29 2.6E-34 299.0 21.8 180 226-436 6-218 (556)
328 TIGR01271 CFTR_protein cystic 100.0 9.5E-30 2.1E-34 327.2 21.7 196 225-447 1216-1435(1490)
329 COG4674 Uncharacterized ABC-ty 100.0 5.7E-30 1.2E-34 251.0 13.4 202 225-449 4-232 (249)
330 PRK13409 putative ATPase RIL; 100.0 4E-29 8.6E-34 294.6 21.3 174 225-437 339-513 (590)
331 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.5E-29 7.6E-34 295.0 20.7 180 226-436 4-216 (552)
332 PRK15177 Vi polysaccharide exp 100.0 3.7E-29 7.9E-34 259.7 18.3 170 254-448 2-188 (213)
333 TIGR00954 3a01203 Peroxysomal 100.0 2.3E-29 5E-34 301.3 19.1 185 225-437 450-638 (659)
334 KOG0059 Lipid exporter ABCA1 a 100.0 1.4E-28 3.1E-33 302.2 26.4 209 225-459 563-790 (885)
335 PRK15064 ABC transporter ATP-b 100.0 4.4E-29 9.6E-34 292.9 20.8 172 226-436 319-493 (530)
336 COG5265 ATM1 ABC-type transpor 100.0 8.7E-30 1.9E-34 274.6 11.2 200 223-447 259-481 (497)
337 COG4133 CcmA ABC-type transpor 100.0 5E-29 1.1E-33 244.0 15.4 176 249-437 12-189 (209)
338 COG4586 ABC-type uncharacteriz 100.0 2.8E-29 6.1E-34 257.8 13.4 193 252-458 37-248 (325)
339 cd03236 ABC_RNaseL_inhibitor_d 100.0 6.4E-29 1.4E-33 264.4 16.7 169 252-437 14-198 (255)
340 PRK11819 putative ABC transpor 100.0 1.3E-28 2.9E-33 290.2 20.6 177 225-437 323-501 (556)
341 COG4608 AppF ABC-type oligopep 100.0 1.9E-28 4.1E-33 255.1 18.6 173 226-447 4-194 (268)
342 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.2E-28 4.8E-33 288.2 21.0 176 226-437 322-499 (552)
343 PLN03232 ABC transporter C fam 100.0 1.3E-28 2.8E-33 317.2 19.8 190 225-448 613-824 (1495)
344 COG1101 PhnK ABC-type uncharac 100.0 2E-28 4.2E-33 243.9 15.4 204 250-461 17-251 (263)
345 PF00005 ABC_tran: ABC transpo 100.0 1E-28 2.2E-33 237.6 12.7 134 255-407 1-137 (137)
346 PLN03130 ABC transporter C fam 100.0 3.2E-28 7E-33 313.9 20.4 189 226-449 614-825 (1622)
347 PRK11147 ABC transporter ATPas 100.0 4.8E-28 1E-32 289.4 20.4 176 225-436 318-495 (635)
348 PRK10636 putative ABC transpor 100.0 6E-28 1.3E-32 288.2 20.7 182 226-447 312-512 (638)
349 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 7.1E-28 1.5E-32 234.7 17.5 126 227-437 1-126 (144)
350 COG4172 ABC-type uncharacteriz 100.0 8.2E-28 1.8E-32 257.6 18.8 211 226-449 6-244 (534)
351 cd03238 ABC_UvrA The excision 100.0 6.5E-28 1.4E-32 242.2 16.0 140 250-437 6-148 (176)
352 cd03222 ABC_RNaseL_inhibitor T 100.0 1E-27 2.3E-32 240.9 16.4 120 250-437 11-131 (177)
353 PRK10636 putative ABC transpor 99.9 2E-27 4.3E-32 283.7 19.3 179 227-437 2-205 (638)
354 PLN03073 ABC transporter F fam 99.9 7.4E-27 1.6E-31 280.2 22.3 175 225-436 507-682 (718)
355 PRK13409 putative ATPase RIL; 99.9 1.2E-27 2.7E-32 282.0 15.1 165 252-437 87-270 (590)
356 cd00267 ABC_ATPase ABC (ATP-bi 99.9 5.5E-27 1.2E-31 231.6 17.3 135 229-437 2-139 (157)
357 TIGR00957 MRP_assoc_pro multi 99.9 6E-27 1.3E-31 302.2 20.9 189 226-449 636-847 (1522)
358 COG4167 SapF ABC-type antimicr 99.9 6E-27 1.3E-31 227.2 14.3 209 227-449 5-236 (267)
359 COG1134 TagH ABC-type polysacc 99.9 4.9E-26 1.1E-30 232.7 21.7 213 226-461 3-241 (249)
360 PLN03211 ABC transporter G-25; 99.9 2.9E-27 6.3E-32 282.1 14.2 145 2-148 456-600 (659)
361 PRK11147 ABC transporter ATPas 99.9 1.3E-26 2.9E-31 276.9 19.7 177 226-436 3-211 (635)
362 COG0488 Uup ATPase components 99.9 1.9E-26 4.2E-31 265.7 16.6 180 226-437 3-209 (530)
363 TIGR01271 CFTR_protein cystic 99.9 4.4E-26 9.6E-31 293.4 21.6 173 252-449 439-633 (1490)
364 TIGR00955 3a01204 The Eye Pigm 99.9 1.5E-26 3.4E-31 275.4 13.4 149 4-152 412-561 (617)
365 COG4778 PhnL ABC-type phosphon 99.9 1.1E-25 2.3E-30 216.4 12.0 197 226-437 4-211 (235)
366 PTZ00243 ABC transporter; Prov 99.9 4E-25 8.7E-30 284.9 20.5 174 251-448 672-866 (1560)
367 cd03270 ABC_UvrA_I The excisio 99.9 5.6E-25 1.2E-29 230.4 17.6 177 250-437 6-198 (226)
368 KOG0054 Multidrug resistance-a 99.9 3.7E-25 8E-30 272.8 18.2 198 224-448 1136-1358(1381)
369 COG4107 PhnK ABC-type phosphon 99.9 2.6E-25 5.6E-30 214.3 13.1 196 226-447 6-236 (258)
370 PLN03073 ABC transporter F fam 99.9 1.5E-25 3.2E-30 269.0 14.1 187 224-436 175-399 (718)
371 KOG0054 Multidrug resistance-a 99.9 8.1E-25 1.8E-29 269.8 18.3 192 224-449 516-728 (1381)
372 cd03271 ABC_UvrA_II The excisi 99.9 3E-24 6.6E-29 228.2 17.1 172 251-436 7-230 (261)
373 cd03278 ABC_SMC_barmotin Barmo 99.9 1.8E-24 3.9E-29 221.7 10.7 151 256-437 14-175 (197)
374 COG0488 Uup ATPase components 99.9 3.1E-23 6.8E-28 239.3 18.0 175 224-437 319-495 (530)
375 COG4178 ABC-type uncharacteriz 99.9 9.5E-23 2.1E-27 234.0 18.1 183 224-437 390-573 (604)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.2E-22 4.8E-27 212.9 13.1 173 250-436 13-219 (243)
377 COG4138 BtuD ABC-type cobalami 99.9 7.6E-23 1.6E-27 197.6 6.2 179 254-449 14-218 (248)
378 COG1129 MglA ABC-type sugar tr 99.9 2.8E-21 6.2E-26 218.0 18.8 173 254-433 274-456 (500)
379 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.8E-23 6E-28 215.3 1.5 164 250-437 15-189 (212)
380 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.1E-22 4.6E-27 214.3 8.3 165 265-437 25-228 (251)
381 cd03240 ABC_Rad50 The catalyti 99.9 2.1E-21 4.5E-26 200.3 11.1 150 258-437 16-182 (204)
382 PF01061 ABC2_membrane: ABC-2 99.8 1.5E-22 3.3E-27 207.0 2.3 209 535-749 1-210 (210)
383 PRK00635 excinuclease ABC subu 99.8 3.8E-20 8.3E-25 234.3 19.7 121 323-449 759-903 (1809)
384 cd03279 ABC_sbcCD SbcCD and ot 99.8 7.2E-21 1.6E-25 197.6 10.3 162 256-437 18-192 (213)
385 KOG0061 Transporter, ABC super 99.8 5.2E-20 1.1E-24 218.0 11.8 148 4-151 409-556 (613)
386 COG4615 PvdE ABC-type sideroph 99.8 8.5E-20 1.8E-24 195.7 11.9 185 225-438 321-509 (546)
387 KOG0927 Predicted transporter 99.8 4.4E-20 9.6E-25 205.1 9.1 176 224-436 387-564 (614)
388 KOG0060 Long-chain acyl-CoA tr 99.8 5.4E-19 1.2E-23 197.8 16.6 189 225-437 432-626 (659)
389 KOG0927 Predicted transporter 99.8 2.1E-19 4.5E-24 199.8 13.1 187 224-436 73-277 (614)
390 PRK00349 uvrA excinuclease ABC 99.8 5.2E-19 1.1E-23 215.9 17.6 97 326-436 791-891 (943)
391 COG3845 ABC-type uncharacteriz 99.8 1.1E-18 2.4E-23 193.4 18.1 193 224-434 255-459 (501)
392 COG1245 Predicted ATPase, RNas 99.8 6.8E-19 1.5E-23 191.9 15.6 170 255-449 357-535 (591)
393 cd03276 ABC_SMC6_euk Eukaryoti 99.8 9.8E-19 2.1E-23 179.5 13.2 154 255-437 12-175 (198)
394 COG4170 SapD ABC-type antimicr 99.8 1.2E-18 2.6E-23 172.9 10.9 194 227-435 4-216 (330)
395 KOG0062 ATPase component of AB 99.8 1.2E-18 2.6E-23 192.9 11.5 177 224-438 78-255 (582)
396 TIGR00630 uvra excinuclease AB 99.8 7.6E-18 1.7E-22 205.4 18.3 97 326-436 789-889 (924)
397 KOG2355 Predicted ABC-type tra 99.8 7.4E-18 1.6E-22 167.0 12.8 180 225-436 12-206 (291)
398 KOG0066 eIF2-interacting prote 99.7 6.5E-18 1.4E-22 182.3 12.5 175 224-437 584-760 (807)
399 cd03275 ABC_SMC1_euk Eukaryoti 99.7 4.9E-18 1.1E-22 180.4 10.2 162 267-437 24-218 (247)
400 COG1245 Predicted ATPase, RNas 99.7 1.8E-17 3.9E-22 180.9 6.6 154 262-436 97-271 (591)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.7 2E-16 4.3E-21 164.3 12.3 62 376-437 124-191 (213)
402 cd03283 ABC_MutS-like MutS-lik 99.7 7.2E-17 1.6E-21 165.8 8.3 133 252-437 14-147 (199)
403 COG2401 ABC-type ATPase fused 99.7 3.9E-16 8.3E-21 168.6 13.6 190 226-437 357-567 (593)
404 KOG0064 Peroxisomal long-chain 99.7 2.9E-16 6.2E-21 173.7 11.8 168 251-437 494-668 (728)
405 cd03280 ABC_MutS2 MutS2 homolo 99.6 5.8E-16 1.2E-20 159.3 8.5 124 255-437 17-150 (200)
406 cd03239 ABC_SMC_head The struc 99.6 3.7E-15 8E-20 150.5 13.4 59 379-437 95-157 (178)
407 KOG0062 ATPase component of AB 99.6 2.9E-15 6.3E-20 166.3 10.9 179 223-437 359-538 (582)
408 cd03241 ABC_RecN RecN ATPase i 99.6 9.2E-15 2E-19 157.9 13.1 59 378-437 170-232 (276)
409 PRK00635 excinuclease ABC subu 99.6 1.1E-14 2.5E-19 185.2 15.6 110 326-448 1660-1792(1809)
410 COG0178 UvrA Excinuclease ATPa 99.6 2.5E-14 5.5E-19 166.0 16.9 98 326-436 783-883 (935)
411 cd03227 ABC_Class2 ABC-type Cl 99.5 8.2E-14 1.8E-18 138.6 12.9 60 378-437 77-140 (162)
412 cd03285 ABC_MSH2_euk MutS2 hom 99.5 1.5E-14 3.3E-19 151.1 7.9 129 251-436 16-151 (222)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.5 5.7E-14 1.2E-18 144.8 8.5 135 251-437 15-150 (204)
414 KOG0066 eIF2-interacting prote 99.5 2E-14 4.3E-19 155.7 4.4 190 225-439 263-470 (807)
415 cd03242 ABC_RecF RecF is a rec 99.4 6.2E-13 1.3E-17 143.3 13.2 48 377-424 182-238 (270)
416 cd03243 ABC_MutS_homologs The 99.4 8.6E-14 1.9E-18 143.4 6.3 59 378-437 91-150 (202)
417 TIGR01247 drrB daunorubicin re 99.4 2.6E-11 5.7E-16 127.8 23.7 230 543-797 1-234 (236)
418 PRK00349 uvrA excinuclease ABC 99.4 6.1E-13 1.3E-17 163.2 11.1 119 325-449 435-582 (943)
419 TIGR00630 uvra excinuclease AB 99.4 8.4E-13 1.8E-17 161.7 11.6 119 325-449 433-580 (924)
420 KOG0063 RNAse L inhibitor, ABC 99.4 2.5E-12 5.4E-17 139.9 13.3 200 225-448 319-535 (592)
421 PF01061 ABC2_membrane: ABC-2 99.3 6.3E-14 1.4E-18 143.2 -2.1 138 5-144 73-210 (210)
422 cd00820 PEPCK_HprK Phosphoenol 99.3 2.1E-12 4.6E-17 118.4 6.4 74 252-336 2-78 (107)
423 TIGR03062 pip_yhgE_Cterm YhgE/ 99.3 1.1E-10 2.5E-15 120.5 18.5 151 629-804 58-208 (208)
424 TIGR01291 nodJ ABC-2 type tran 99.3 1.3E-09 2.7E-14 116.5 26.4 237 537-800 7-248 (253)
425 cd03284 ABC_MutS1 MutS1 homolo 99.3 1.2E-11 2.7E-16 128.7 10.2 130 251-437 17-152 (216)
426 TIGR03861 phenyl_ABC_PedC alco 99.3 2.4E-09 5.3E-14 114.1 27.1 209 534-746 1-219 (253)
427 PTZ00132 GTP-binding nuclear p 99.2 9E-12 2E-16 129.4 7.1 45 382-426 156-205 (215)
428 TIGR00025 Mtu_efflux ABC trans 99.2 3.2E-09 7E-14 111.7 24.7 224 549-800 2-229 (232)
429 cd03281 ABC_MSH5_euk MutS5 hom 99.1 3.1E-10 6.6E-15 118.0 11.9 130 253-437 17-153 (213)
430 TIGR01069 mutS2 MutS2 family p 99.1 9.2E-11 2E-15 142.4 9.2 128 258-437 314-444 (771)
431 KOG0063 RNAse L inhibitor, ABC 99.1 1.2E-10 2.7E-15 126.9 8.8 157 263-437 98-272 (592)
432 PF02463 SMC_N: RecF/RecN/SMC 99.1 2.2E-10 4.7E-15 119.5 10.1 58 378-436 136-197 (220)
433 smart00534 MUTSac ATPase domai 99.1 9.2E-11 2E-15 119.3 6.3 60 377-437 60-121 (185)
434 PRK00064 recF recombination pr 99.1 9.4E-10 2E-14 123.4 14.8 56 377-435 272-336 (361)
435 cd03287 ABC_MSH3_euk MutS3 hom 99.0 2.1E-09 4.6E-14 112.3 13.3 131 252-437 18-153 (222)
436 TIGR02858 spore_III_AA stage I 99.0 6.3E-10 1.4E-14 119.4 9.3 113 266-437 112-228 (270)
437 PRK15066 inner membrane transp 99.0 1.8E-07 4E-12 100.0 27.7 244 533-803 6-253 (257)
438 PRK08533 flagellar accessory p 98.9 1.1E-08 2.5E-13 107.6 11.6 132 261-435 20-160 (230)
439 cd03286 ABC_MSH6_euk MutS6 hom 98.9 8.2E-09 1.8E-13 107.6 10.1 133 251-437 16-152 (218)
440 PRK00409 recombination and DNA 98.8 4.9E-09 1.1E-13 127.9 8.0 60 377-437 389-449 (782)
441 TIGR03062 pip_yhgE_Cterm YhgE/ 98.8 1.6E-08 3.4E-13 104.5 10.4 120 24-147 58-177 (208)
442 cd01128 rho_factor Transcripti 98.8 9.2E-09 2E-13 109.2 7.3 164 260-437 11-193 (249)
443 PRK14079 recF recombination pr 98.8 4.2E-08 9.1E-13 109.6 12.8 46 378-423 263-317 (349)
444 PF13304 AAA_21: AAA domain; P 98.7 3.9E-08 8.4E-13 102.3 7.5 60 377-436 235-297 (303)
445 COG0842 ABC-type multidrug tra 98.7 4.7E-06 1E-10 88.8 23.4 238 545-805 42-285 (286)
446 TIGR01247 drrB daunorubicin re 98.6 1.2E-07 2.6E-12 100.0 10.4 119 24-144 88-206 (236)
447 TIGR00634 recN DNA repair prot 98.6 4.8E-08 1E-12 116.0 7.4 60 377-437 439-502 (563)
448 PRK07721 fliI flagellum-specif 98.6 6.1E-07 1.3E-11 102.5 14.9 68 251-321 145-223 (438)
449 PRK06793 fliI flagellum-specif 98.6 1.7E-07 3.6E-12 106.4 10.0 129 252-431 144-279 (432)
450 cd01124 KaiC KaiC is a circadi 98.6 3.6E-07 7.9E-12 92.3 11.6 61 377-437 70-139 (187)
451 PRK10246 exonuclease subunit S 98.6 8.4E-08 1.8E-12 121.3 8.4 61 376-436 947-1015(1047)
452 PRK10869 recombination and rep 98.6 8.3E-08 1.8E-12 113.2 7.6 60 377-437 429-492 (553)
453 COG0178 UvrA Excinuclease ATPa 98.6 6.2E-07 1.3E-11 105.6 14.4 119 325-449 427-574 (935)
454 PRK06995 flhF flagellar biosyn 98.6 1.8E-07 3.8E-12 107.5 9.5 153 253-438 244-402 (484)
455 PHA02562 46 endonuclease subun 98.6 9.1E-08 2E-12 113.7 7.5 59 377-437 467-536 (562)
456 TIGR00618 sbcc exonuclease Sbc 98.5 1.3E-07 2.7E-12 120.2 8.6 62 376-437 948-1019(1042)
457 COG3910 Predicted ATPase [Gene 98.5 9.3E-07 2E-11 87.9 12.2 62 374-436 125-186 (233)
458 TIGR01248 drrC daunorubicin re 98.5 2.7E-06 6E-11 83.8 15.2 130 613-745 15-146 (152)
459 TIGR03238 dnd_assoc_3 dnd syst 98.5 6.9E-08 1.5E-12 109.3 4.2 51 252-306 19-70 (504)
460 TIGR00606 rad50 rad50. This fa 98.5 2.1E-07 4.6E-12 120.6 8.7 68 368-437 1191-1269(1311)
461 TIGR00025 Mtu_efflux ABC trans 98.5 7.9E-07 1.7E-11 93.6 10.4 117 24-142 77-196 (232)
462 cd01120 RecA-like_NTPases RecA 98.4 4.6E-07 9.9E-12 88.5 7.6 60 379-438 68-137 (165)
463 PRK13695 putative NTPase; Prov 98.4 3.9E-07 8.4E-12 91.6 6.2 56 378-437 78-135 (174)
464 TIGR02788 VirB11 P-type DNA tr 98.4 2.2E-06 4.8E-11 94.2 11.3 42 258-301 137-178 (308)
465 cd01130 VirB11-like_ATPase Typ 98.4 7.9E-07 1.7E-11 90.5 7.2 84 255-340 15-100 (186)
466 PRK07196 fliI flagellum-specif 98.3 6E-07 1.3E-11 102.0 6.7 88 251-339 142-239 (434)
467 PRK06067 flagellar accessory p 98.3 2.9E-06 6.2E-11 89.5 11.3 145 254-437 13-164 (234)
468 cd01125 repA Hexameric Replica 98.3 1.1E-06 2.4E-11 93.0 8.1 134 265-437 1-158 (239)
469 TIGR01248 drrC daunorubicin re 98.3 3.6E-06 7.8E-11 83.0 10.4 114 24-139 30-145 (152)
470 PRK03918 chromosome segregatio 98.3 8.7E-07 1.9E-11 111.0 7.5 62 376-437 786-853 (880)
471 smart00382 AAA ATPases associa 98.3 1E-05 2.2E-10 75.9 12.6 42 378-419 60-101 (148)
472 TIGR01291 nodJ ABC-2 type tran 98.3 4.1E-06 8.8E-11 89.5 10.7 128 13-142 81-216 (253)
473 cd01131 PilT Pilus retraction 98.3 5.6E-06 1.2E-10 85.2 11.0 44 388-438 66-109 (198)
474 PRK01156 chromosome segregatio 98.2 2.5E-06 5.4E-11 107.1 8.0 62 376-437 799-869 (895)
475 TIGR03518 ABC_perm_GldF glidin 98.1 0.00055 1.2E-08 72.7 23.1 222 538-800 2-238 (240)
476 PRK13830 conjugal transfer pro 98.1 2.1E-05 4.6E-10 97.2 13.8 45 393-437 649-694 (818)
477 TIGR02168 SMC_prok_B chromosom 98.1 3E-06 6.5E-11 109.0 6.6 61 376-437 1087-1151(1179)
478 cd02023 UMPK Uridine monophosp 98.1 2.6E-06 5.5E-11 87.4 4.7 112 267-411 1-113 (198)
479 PRK06002 fliI flagellum-specif 98.1 8.9E-06 1.9E-10 92.6 9.3 84 224-322 137-230 (450)
480 TIGR01420 pilT_fam pilus retra 98.1 2E-05 4.3E-10 88.1 11.4 42 389-437 188-229 (343)
481 PRK09825 idnK D-gluconate kina 98.0 2.9E-06 6.2E-11 85.7 3.7 66 264-335 2-69 (176)
482 TIGR03861 phenyl_ABC_PedC alco 98.0 3.9E-05 8.4E-10 81.9 11.1 116 23-139 99-217 (253)
483 TIGR00611 recf recF protein. A 98.0 1.1E-05 2.3E-10 90.8 6.5 56 378-436 275-339 (365)
484 PF13555 AAA_29: P-loop contai 98.0 8.8E-06 1.9E-10 67.3 4.2 33 255-287 12-45 (62)
485 PRK13891 conjugal transfer pro 97.9 0.00014 3E-09 90.5 15.8 49 389-437 680-729 (852)
486 TIGR02169 SMC_prok_A chromosom 97.9 1.3E-05 2.9E-10 103.2 6.3 61 376-437 1072-1136(1164)
487 PF06422 PDR_CDR: CDR ABC tran 97.9 2.6E-05 5.6E-10 71.6 6.4 56 761-819 32-87 (103)
488 PRK00454 engB GTP-binding prot 97.8 0.00013 2.9E-09 74.0 11.5 48 377-427 146-195 (196)
489 COG1682 TagG ABC-type polysacc 97.8 0.0089 1.9E-07 64.3 25.7 205 533-751 16-226 (263)
490 PRK02224 chromosome segregatio 97.8 2.4E-05 5.3E-10 98.1 7.2 62 376-437 779-853 (880)
491 PF12698 ABC2_membrane_3: ABC- 97.8 4.2E-06 9.2E-11 91.3 0.1 153 616-796 188-343 (344)
492 TIGR02655 circ_KaiC circadian 97.8 1.1E-06 2.3E-11 102.7 -5.1 150 254-437 9-166 (484)
493 PRK15066 inner membrane transp 97.8 9.8E-05 2.1E-09 79.1 10.2 116 23-140 101-216 (257)
494 TIGR03881 KaiC_arch_4 KaiC dom 97.8 1E-05 2.2E-10 84.9 2.4 33 254-286 8-41 (229)
495 PF13558 SbcCD_C: Putative exo 97.8 3.5E-05 7.5E-10 69.1 5.3 47 377-423 31-90 (90)
496 PRK05399 DNA mismatch repair p 97.8 5.7E-05 1.2E-09 93.7 8.8 35 252-287 595-629 (854)
497 PRK08149 ATP synthase SpaL; Va 97.7 6.5E-05 1.4E-09 85.4 8.2 70 251-321 138-215 (428)
498 TIGR02680 conserved hypothetic 97.7 4.1E-05 8.8E-10 99.4 6.9 57 376-435 1245-1313(1353)
499 PRK10078 ribose 1,5-bisphospho 97.7 3.8E-05 8.1E-10 78.2 4.7 36 265-305 2-37 (186)
500 TIGR00767 rho transcription te 97.7 5.1E-05 1.1E-09 85.0 6.1 53 225-289 129-192 (415)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-158 Score=1405.34 Aligned_cols=795 Identities=50% Similarity=0.861 Sum_probs=707.8
Q ss_pred CcchhhhhhcCchhhhhccCCCCchhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHH
Q 044554 1 MSEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSA 80 (829)
Q Consensus 1 ~~e~~~~~~~r~i~~kq~~~~fy~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~ 80 (829)
|+|+++++++||||+|||++.||||||+++|.+++++|.+++++++|++|+|||+||+++|++||+|+|++++++.|+++
T Consensus 508 laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~ 587 (1391)
T KOG0065|consen 508 LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSG 587 (1391)
T ss_pred HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHHhhhccCCCccccc---cccC
Q 044554 81 LFRLVAATGRNMVVANTFGSFTLLLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIAVNEFLGNSWRKFV---LIPA 157 (829)
Q Consensus 81 ~f~~~aa~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~~NEf~~~~~~c~~---l~~~ 157 (829)
+||++|+++||+..|+.+||+.++++.+|+||+||.++||+|||||+||||++||||++++|||++++|+|.+ .|.+
T Consensus 588 lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n 667 (1391)
T KOG0065|consen 588 LFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDN 667 (1391)
T ss_pred HHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999972 3331
Q ss_pred C-----------CCCCeeEEeccccc-----cccccc-----------------------------cccccccccCCCCc
Q 044554 158 A-----------FGKNQAVISEESQS-----NEHDNR-----------------------------IGGTVQLSTNGKSG 192 (829)
Q Consensus 158 ~-----------~~~~~~~~~~~~~~-----~~~~~~-----------------------------~~~~~~~~~~~~~~ 192 (829)
. ...|..++.++++. .++.+. ..+.+...+.+..+
T Consensus 668 ~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~ 747 (1391)
T KOG0065|consen 668 ISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEK 747 (1391)
T ss_pred cccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhh
Confidence 1 12245566665554 111110 00000000000000
Q ss_pred cccccccccc-cccccccccccccCCCcCCCCCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEE
Q 044554 193 HDIRRTNSTY-LTEADTRANHHQKRGMVLPFEPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALM 271 (829)
Q Consensus 193 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~ 271 (829)
... ..++.. ..+......+..+.++..|..+..++++||.+.++.+.+++..+ +++++|+|||+.++||.++|||
T Consensus 748 ~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALM 823 (1391)
T KOG0065|consen 748 KKV-KSAGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALM 823 (1391)
T ss_pred hcc-hhccccccccccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehh
Confidence 000 000000 00000000111233455666667778888888777776665554 6789999999999999999999
Q ss_pred cCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHH
Q 044554 272 GVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRK 351 (829)
Q Consensus 272 G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~ 351 (829)
|+||||||||||+||||.+.|.++|+|.+||.|.++..++|.+|||.|+|.|.+.+||||.|+|+|.||+|.+++.++|.
T Consensus 824 G~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~ 903 (1391)
T KOG0065|consen 824 GESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKY 903 (1391)
T ss_pred cCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHH
Confidence 99999999999999999999999999999999998788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCC-CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q 044554 352 MFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRT 430 (829)
Q Consensus 352 ~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p-~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~t 430 (829)
++||++++.++|++++|.+||+|| +|||.+||||++||+||++|| .||||||||||||+++|..|++.+|+++++|+|
T Consensus 904 ~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqt 982 (1391)
T KOG0065|consen 904 EYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQT 982 (1391)
T ss_pred HHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCe
Confidence 999999999999999999999999 999999999999999999999 799999999999999999999999999999999
Q ss_pred E-----------------EEEEecCcEEEEEcCCCCCchhhHHHHhcCCCccccCCCCCCcceEEeecCccccccccccH
Q 044554 431 V-----------------LFLLKRGGQEIYVGPLGEHSSHLIKYFEGIPGVSTIKDGYNPATWMLEITTPSQETSLGIDF 493 (829)
Q Consensus 431 v-----------------llll~~~G~~vy~G~~~~~~~~~~~~f~~~~~~~~~~~~~npAd~~l~v~~~~~~~~~~~d~ 493 (829)
| +++|+|||++||+||+|++++++++||++++++ +|++..|||||+||+++.+.+.+.+.||
T Consensus 983 IlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~ 1061 (1391)
T KOG0065|consen 983 ILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDF 1061 (1391)
T ss_pred EEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccccCccH
Confidence 9 567889999999999999999999999999887 4666669999999999998888888899
Q ss_pred HHHHhhcHHHHHHHHHHHhhCCCCCC-CCCcccccccchhHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Q 044554 494 AGIYKSSELYRRNKELIKDLSKPAHG-SKDLHFATQYAQSFFTQCMVCLWKQHWSYWRNPSYNAVRFLFTTVIALAFGTM 572 (829)
Q Consensus 494 ~~~~~~S~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~ 572 (829)
++.|++|++++++++++++++++.+. ..+....++|++|+|.|++.+++|++..+||+|+|+.+|++.+++.||++|++
T Consensus 1062 a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~ 1141 (1391)
T KOG0065|consen 1062 AEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFT 1141 (1391)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheee
Confidence 99999999999999999999988887 66777788899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcCchhhHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 044554 573 FWDIGTKITKKQDLFNAMGSMYVAVLFLGVKNASSVQPVVSVERTVFYRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTY 652 (829)
Q Consensus 573 f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~p~~~~eR~vf~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if 652 (829)
||++|+ +.|+++|++|++|+++++.+..+.....|.+..||.+++||+++|+|||.+|++|++++|+|+.++++++|
T Consensus 1142 F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~ 1218 (1391)
T KOG0065|consen 1142 FWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLF 1218 (1391)
T ss_pred eeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999996 78999999999999999998887766777777889999999999999999999999999999999999999
Q ss_pred hhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccCccCCCCcchHhHHhh
Q 044554 653 GVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAVAMTPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYY 732 (829)
Q Consensus 653 ~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~ 732 (829)
++|+|+|+||.+++.++++|++.++++.++++++|+|+.+++||.++|+.+.+++++++.+|||+++|++.||.||+|||
T Consensus 1219 ~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy 1298 (1391)
T KOG0065|consen 1219 FLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMY 1298 (1391)
T ss_pred heeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhChHHHHHHHHHHHHhCCCccccCC----------CCcHHHHHHhhhC----CccCchhHHHHHHHHHHHHHHHHHHHH
Q 044554 733 WACPISWTLYGLVASQFGDKQDRLES----------GETVEQFLSSYFG----FRHDFLGVVAAVVGALPVLFALIFAVG 798 (829)
Q Consensus 733 yisp~~y~~~~l~~nef~~~~~~~~~----------~~~~~~~l~~~~g----~~~~~~~~~~~il~~~~v~f~~~~~~~ 798 (829)
|+||++|.+++++..++||.+..|.. |+||++|+.+++| +.++.......+..++.+++.+++.+.
T Consensus 1299 ~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~ 1378 (1391)
T KOG0065|consen 1299 YLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFN 1378 (1391)
T ss_pred ecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHH
Confidence 99999999999999999999988842 5699999999999 877777777778888999999999999
Q ss_pred HHhhcc
Q 044554 799 IKAKLL 804 (829)
Q Consensus 799 l~~~~~ 804 (829)
+++.|+
T Consensus 1379 ~~y~~~ 1384 (1391)
T KOG0065|consen 1379 IKYLNF 1384 (1391)
T ss_pred HHHHHH
Confidence 998874
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=9e-142 Score=1342.81 Aligned_cols=804 Identities=58% Similarity=1.054 Sum_probs=688.8
Q ss_pred CcchhhhhhcCchhhhhccCCCCchhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHH
Q 044554 1 MSEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSA 80 (829)
Q Consensus 1 ~~e~~~~~~~r~i~~kq~~~~fy~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~ 80 (829)
++|++..+++||||+|||+++||||+||++|++++|||+.++++++|++|+|||+||++++++||+|+++++++++++++
T Consensus 586 ~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~ 665 (1470)
T PLN03140 586 FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAG 665 (1470)
T ss_pred HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHHhhhccCCCccc---cc----
Q 044554 81 LFRLVAATGRNMVVANTFGSFTLLLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIAVNEFLGNSWRK---FV---- 153 (829)
Q Consensus 81 ~f~~~aa~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~~NEf~~~~~~c---~~---- 153 (829)
+||++++++||+..|+.+++++++++++|+||+||+++||+||+|++||||+.|||||+++|||.+..|.| +.
T Consensus 666 l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~ 745 (1470)
T PLN03140 666 IFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTR 745 (1470)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987752 10
Q ss_pred ---------ccc-------------------------------CCCCCCeeEEeccccccccccccccccc-cccCCCCc
Q 044554 154 ---------LIP-------------------------------AAFGKNQAVISEESQSNEHDNRIGGTVQ-LSTNGKSG 192 (829)
Q Consensus 154 ---------l~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 192 (829)
+|. ++.......++.+.......+.....-. ..+.++..
T Consensus 746 ~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1470)
T PLN03140 746 LGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNT 825 (1470)
T ss_pred cHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccccc
Confidence 000 0000000000000000000000000000 00000000
Q ss_pred cccc----ccccc----ccccccccccccccCCCcCCCCCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeC
Q 044554 193 HDIR----RTNST----YLTEADTRANHHQKRGMVLPFEPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRP 264 (829)
Q Consensus 193 ~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 264 (829)
.... ...+. ...+.+.......+.++.+|..+..++|+||+|.++.+.+.++.+...+++++|+|||++++|
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 905 (1470)
T PLN03140 826 REVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP 905 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEEC
Confidence 0000 00000 000000000011122344566778899999999998766544444444567899999999999
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPE 344 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~ 344 (829)
||++|||||||||||||||+|+|+.++|.++|+|.+||.+.+...+++.+|||+|+|.+++.+||+|||.|++.+|+|..
T Consensus 906 Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~ 985 (1470)
T PLN03140 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE 985 (1470)
T ss_pred CeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999987777889999999887544566789999999999999999999999998888776
Q ss_pred CCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHH
Q 044554 345 VDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNT 424 (829)
Q Consensus 345 ~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l 424 (829)
.+++++.++++++++.++|.+++|+.+|++++++|||||||||+||++|+++|++|||||||||||+.++..+++.|+++
T Consensus 986 ~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 986 VSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 77777778899999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEE-----------------EEEecCcEEEEEcCCCCCchhhHHHHhcCCCccccCCCCCCcceEEeecCccccc
Q 044554 425 VDTGRTVL-----------------FLLKRGGQEIYVGPLGEHSSHLIKYFEGIPGVSTIKDGYNPATWMLEITTPSQET 487 (829)
Q Consensus 425 ~~~g~tvl-----------------lll~~~G~~vy~G~~~~~~~~~~~~f~~~~~~~~~~~~~npAd~~l~v~~~~~~~ 487 (829)
+++|+||| ++++++|+++|+|+++++++++++||++++|.++||+++|||||++|+++.+.+.
T Consensus 1066 ~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~ 1145 (1470)
T PLN03140 1066 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV 1145 (1470)
T ss_pred HHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc
Confidence 98899984 4554569999999999888999999999877767999999999999999876555
Q ss_pred cccccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Q 044554 488 SLGIDFAGIYKSSELYRRNKELIKDLSKPAHGSKDLHFATQYAQSFFTQCMVCLWKQHWSYWRNPSYNAVRFLFTTVIAL 567 (829)
Q Consensus 488 ~~~~d~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l 567 (829)
....||++.|++|+++++..+.++++..+.+...+....++|++|+|+|++.|++|+++++||||.|+.+|+++++++|+
T Consensus 1146 ~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al 1225 (1470)
T PLN03140 1146 KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAAL 1225 (1470)
T ss_pred cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHH
Confidence 55679999999999999888877777665544444444568999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcCchhhHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHH
Q 044554 568 AFGTMFWDIGTKITKKQDLFNAMGSMYVAVLFLGVKNASSVQPVVSVERTVFYRERAAGLYSAFPYAFAQVLIEIPYIFV 647 (829)
Q Consensus 568 ~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~p~~~~eR~vf~RE~~~~~Y~~~ay~la~~l~elP~~~~ 647 (829)
++|++||+++++.++.+++++++|++|++++++++.++++++|.+..||++|+||+++|+|++.+|++|++++|+|+.++
T Consensus 1226 ~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~ 1305 (1470)
T PLN03140 1226 MVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLI 1305 (1470)
T ss_pred HHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999998777788999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccCccCCCCcchH
Q 044554 648 QAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAVAMTPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIW 727 (829)
Q Consensus 648 ~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~ 727 (829)
++++|++|+|||+||++++++||+|++++++..++++++|+++++++||.++|+.+++++++++++||||++|+++||+|
T Consensus 1306 ~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~ 1385 (1470)
T PLN03140 1306 QTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKW 1385 (1470)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhChHHHHHHHHHHHHhCCCccccCC-----CCcHHHHHHhhhCCccCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 044554 728 WRWYYWACPISWTLYGLVASQFGDKQDRLES-----GETVEQFLSSYFGFRHDFLGVVAAVVGALPVLFALIFAVGIKAK 802 (829)
Q Consensus 728 ~~W~~yisp~~y~~~~l~~nef~~~~~~~~~-----~~~~~~~l~~~~g~~~~~~~~~~~il~~~~v~f~~~~~~~l~~~ 802 (829)
|+|+||+||++|+++|+++|||+|.+.+|.+ +.++.+|++++||++++++|++++++++|+++|+++++++++++
T Consensus 1386 ~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~ 1465 (1470)
T PLN03140 1386 WVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTL 1465 (1470)
T ss_pred HHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998876643 25789999999999999999999999999999999999999999
Q ss_pred cc
Q 044554 803 LL 804 (829)
Q Consensus 803 ~~ 804 (829)
|.
T Consensus 1466 ~~ 1467 (1470)
T PLN03140 1466 NF 1467 (1470)
T ss_pred hc
Confidence 84
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-128 Score=1227.90 Aligned_cols=786 Identities=30% Similarity=0.522 Sum_probs=647.1
Q ss_pred cchhhhhhcCchhhhhccCCCCchhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHH
Q 044554 2 SEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSAL 81 (829)
Q Consensus 2 ~e~~~~~~~r~i~~kq~~~~fy~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~ 81 (829)
+|++..+.+||||+|||+++||||++|++|++++|+|+.++++++|++|+|||+||++++++||+|++++++++++++++
T Consensus 470 ~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~ 549 (1394)
T TIGR00956 470 LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHL 549 (1394)
T ss_pred HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHHhhhccCCCccccc------cc
Q 044554 82 FRLVAATGRNMVVANTFGSFTLLLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIAVNEFLGNSWRKFV------LI 155 (829)
Q Consensus 82 f~~~aa~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~~NEf~~~~~~c~~------l~ 155 (829)
++++++++||+..|+.+++++++++++|+||+||+++||+||+|++||||+.|||||+++|||++..++|.. .|
T Consensus 550 ~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y 629 (1394)
T TIGR00956 550 FRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGY 629 (1394)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999952 12
Q ss_pred cCC--------C---CCCeeEEeccccccc-----cccc--------------------cccccc-cccCC--------C
Q 044554 156 PAA--------F---GKNQAVISEESQSNE-----HDNR--------------------IGGTVQ-LSTNG--------K 190 (829)
Q Consensus 156 ~~~--------~---~~~~~~~~~~~~~~~-----~~~~--------------------~~~~~~-~~~~~--------~ 190 (829)
.+. . ..++..+.++++... +.+. ..+... ....+ .
T Consensus 630 ~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~ 709 (1394)
T TIGR00956 630 DNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGS 709 (1394)
T ss_pred CCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEeecccc
Confidence 110 0 001112233222110 0110 000000 00000 0
Q ss_pred Cccccccccc------cccccccc---cc-ccccc--CCCcCC--CCCceEEEEeeEEEEeCCccccCCCCCCCceeeee
Q 044554 191 SGHDIRRTNS------TYLTEADT---RA-NHHQK--RGMVLP--FEPHSITFDDITYSVDMPQEMINPGVSEDQLVLLN 256 (829)
Q Consensus 191 ~~~~~~~~~~------~~~~~~~~---~~-~~~~~--~~~~~~--~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~ 256 (829)
.........+ ..++..+. .. .+... .....+ .....++|+||+|+++.+ .+++.+|+
T Consensus 710 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~ 780 (1394)
T TIGR00956 710 LKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK---------KEKRVILN 780 (1394)
T ss_pred ccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEEecCC---------CCCcEeee
Confidence 0000000000 00000000 00 00000 000000 112358999999998421 23468999
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCe-eEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHH
Q 044554 257 GVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGY-ITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLY 335 (829)
Q Consensus 257 ~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~-~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f 335 (829)
|||++++|||++|||||||||||||||+|+|+.++|. .+|+|.+||++.. ..+++.+|||+|+|.+++.+||+|||.|
T Consensus 781 ~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~ 859 (1394)
T TIGR00956 781 NVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESLRF 859 (1394)
T ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeeecccccCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999877553 3599999999875 3467789999999999999999999999
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCC-cceecCCCCCCCHHHH
Q 044554 336 SAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPS-IIFMDEPTSGLDARAA 414 (829)
Q Consensus 336 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~-iL~LDEPTsGLD~~~~ 414 (829)
++.+|.|...+++++.++++++++.++|.+++|+.+|.++. +||||||||++||+||+.+|+ ||+|||||||||+.++
T Consensus 860 ~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~ 938 (1394)
T TIGR00956 860 SAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA 938 (1394)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHH
Confidence 99998877667777788899999999999999999987643 899999999999999999997 9999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEE-----------------EEEecCcEEEEEcCCCCCchhhHHHHhcCCCccccCCCCCCcceE
Q 044554 415 AIFMRTVRNTVDTGRTVL-----------------FLLKRGGQEIYVGPLGEHSSHLIKYFEGIPGVSTIKDGYNPATWM 477 (829)
Q Consensus 415 ~~i~~~l~~l~~~g~tvl-----------------lll~~~G~~vy~G~~~~~~~~~~~~f~~~~~~~~~~~~~npAd~~ 477 (829)
..+++.|++++++|+||| +++++||+++|+|+++++++++++||+++ |.++||+++|||||+
T Consensus 939 ~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ 1017 (1394)
T TIGR00956 939 WSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWM 1017 (1394)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHH
Confidence 999999999998899984 45545569999999998888999999987 445799999999999
Q ss_pred EeecCccccccccccHHHHHhhcHHHHHHHHHHHhhCCCCCCC---CCcccccccchhHHHHHHHHHHHHHHHhccChhH
Q 044554 478 LEITTPSQETSLGIDFAGIYKSSELYRRNKELIKDLSKPAHGS---KDLHFATQYAQSFFTQCMVCLWKQHWSYWRNPSY 554 (829)
Q Consensus 478 l~v~~~~~~~~~~~d~~~~~~~S~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~ 554 (829)
||+++.+.+.....||.+.|++|+++++..+++++...+.... .+.....++++|+++|+++|++|+++++||||.+
T Consensus 1018 ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~ 1097 (1394)
T TIGR00956 1018 LEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDY 1097 (1394)
T ss_pred HHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 9998865544444689999999998877666665543321111 1111224689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCchhhHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhhHH-HhHhcCCCCChHHH
Q 044554 555 NAVRFLFTTVIALAFGTMFWDIGTKITKKQDLFNAMGSMYVAVLFLGVKNASSVQPVVSVERTVF-YRERAAGLYSAFPY 633 (829)
Q Consensus 555 ~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~p~~~~eR~vf-~RE~~~~~Y~~~ay 633 (829)
+.+|+++++++|+++|++||++++ +++++++|+|++|+.+++.++. +.+++|.|+.||.+| +||+++|+|++.+|
T Consensus 1098 ~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y 1173 (1394)
T TIGR00956 1098 LYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAF 1173 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHH
Confidence 999999999999999999999987 5788999999999988777665 456678888889886 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHH-------HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 044554 634 AFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATK-------FFWYLFFVFFTLLYFTFYGMMAVAMTPNYHISAIIVSS 706 (829)
Q Consensus 634 ~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~-------f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~A~~~~~~ 706 (829)
++|++++|+|+.++.+++|++|+|||+||++++.. |++|++++++..++++++|+++++++|+.++|+.++++
T Consensus 1174 ~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~ 1253 (1394)
T TIGR00956 1174 IAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASL 1253 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Confidence 99999999999999999999999999999988765 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCC----------CCcHHHHH----------
Q 044554 707 FNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLES----------GETVEQFL---------- 766 (829)
Q Consensus 707 ~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~----------~~~~~~~l---------- 766 (829)
+++++++||||++|+++||.||+|++|+||++|+++|++.|||+|.+..|.+ |+||++|+
T Consensus 1254 ~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~ 1333 (1394)
T TIGR00956 1254 LFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGY 1333 (1394)
T ss_pred HHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcE
Confidence 9999999999999999999999999999999999999999999998887743 34565443
Q ss_pred ---------------------HhhhCCccCchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044554 767 ---------------------SSYFGFRHDFLGVVAAVVGALPVLFALIFAVGIKAKLL 804 (829)
Q Consensus 767 ---------------------~~~~g~~~~~~~~~~~il~~~~v~f~~~~~~~l~~~~~ 804 (829)
+..++++.++.|+|++++++|++++ +++++++.+..|
T Consensus 1334 l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1334 LLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred eeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 2356888889999999999999988 777788777544
No 4
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.5e-95 Score=862.18 Aligned_cols=562 Identities=24% Similarity=0.387 Sum_probs=466.4
Q ss_pred CceEEEEeeEEEEeCCcc----------------ccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 224 PHSITFDDITYSVDMPQE----------------MINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~----------------~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
+.+++|+|++|+++.... .++.....+++.+|+|+|+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 678999999999865420 0111223346789999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccch
Q 044554 288 RKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLR 367 (829)
Q Consensus 288 ~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~ 367 (829)
+.+++..+|+|.+||++... ..++.++||+|++.+++.+||+||+.|++.++.+...++++++++++++++.+||.+++
T Consensus 117 ~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 87654468999999998653 33456899999999999999999999998887776566667778899999999999999
Q ss_pred hhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe-----------
Q 044554 368 KALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK----------- 436 (829)
Q Consensus 368 ~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~----------- 436 (829)
|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++.++++.|++++++|+||++..|
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 999998878899999999999999999999999999999999999999999999999988999854332
Q ss_pred -----cCcEEEEEcCCCCCchhhHHHHhcCCCccccCCCCCCcceEEeecCcccccc-----c----cccHHHHHhhcHH
Q 044554 437 -----RGGQEIYVGPLGEHSSHLIKYFEGIPGVSTIKDGYNPATWMLEITTPSQETS-----L----GIDFAGIYKSSEL 502 (829)
Q Consensus 437 -----~~G~~vy~G~~~~~~~~~~~~f~~~~~~~~~~~~~npAd~~l~v~~~~~~~~-----~----~~d~~~~~~~S~~ 502 (829)
++|+++|+|+. +++.+||+++| . +||+++|||||++|+++.+.+.. . ..+..+.|+++.
T Consensus 276 ~iilL~~G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 348 (659)
T PLN03211 276 SVLVLSEGRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL- 348 (659)
T ss_pred eEEEecCCcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc-
Confidence 46999999997 67999999985 3 69999999999999987542110 0 011233443211
Q ss_pred HHHHHHHHHh--hCC-CCC-----CCCCc-ccccccchhHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHh
Q 044554 503 YRRNKELIKD--LSK-PAH-----GSKDL-HFATQYAQSFFTQCMVCLWKQHWSYWRNPSYNAVRFLFTTVIALAFGTMF 573 (829)
Q Consensus 503 ~~~~~~~~~~--~~~-~~~-----~~~~~-~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f 573 (829)
.++..+..+. ... ... ..+.. .....+.++||+|+.+|++|++++ |||+.+...|+++++++|+++|++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf 427 (659)
T PLN03211 349 APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMW 427 (659)
T ss_pred cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 000 000 00000 011235578999999999999998 8999999999999999999999999
Q ss_pred cCCCCCcCchhhHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 044554 574 WDIGTKITKKQDLFNAMGSMYVAVLFLGVKNASSVQPVVSVERTVFYRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYG 653 (829)
Q Consensus 574 ~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~p~~~~eR~vf~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~ 653 (829)
|+++ ..++++|.|++|+++++.++.+++.+++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|.
T Consensus 428 ~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~ 502 (659)
T PLN03211 428 WHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFL 502 (659)
T ss_pred hcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9984 46799999999999888888888888899999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhh
Q 044554 654 VLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAVAMTPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYW 733 (829)
Q Consensus 654 ~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~y 733 (829)
+|+|||+||++++++||+|++++++..++++++|+++++++||..+|+.+++++++++++|+||+++ +||+||+|++|
T Consensus 503 ~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~y 580 (659)
T PLN03211 503 TVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKY 580 (659)
T ss_pred hheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 79999999999
Q ss_pred hChHHHHHHHHHHHHhCCCc-----cccCCC-----CcHHHHHHhhhCCccCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044554 734 ACPISWTLYGLVASQFGDKQ-----DRLESG-----ETVEQFLSSYFGFRHDFLGVVAAVVGALPVLFALIFAVGIKAKL 803 (829)
Q Consensus 734 isp~~y~~~~l~~nef~~~~-----~~~~~~-----~~~~~~l~~~~g~~~~~~~~~~~il~~~~v~f~~~~~~~l~~~~ 803 (829)
+||++|++|+++.|||++.+ .+|... ..| .++ ...++.+...|.++++|++++++|+++++++|+++|
T Consensus 581 lS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c-~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 581 ISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASC-KFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCC-ccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998653 246421 112 122 223444557899999999999999999999999765
No 5
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-95 Score=855.77 Aligned_cols=563 Identities=29% Similarity=0.524 Sum_probs=484.6
Q ss_pred CCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEEc
Q 044554 223 EPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-YITGNIAIS 301 (829)
Q Consensus 223 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g-~~~G~i~i~ 301 (829)
.+..+.|+|+++..+.+. ...+++|+|||++++|||++|||||||||||||||+|+|+...| ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~--------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKS--------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCC--------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 356799999999985321 13588999999999999999999999999999999999998765 688999999
Q ss_pred CeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 302 GYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 302 G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
|++.+.+.+++.+|||+|||.++|++||+|+|.|+|.+|+|.+.++++|+++||++++.|||.+++|+++|+++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98877778899999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe----------------cCcEEEEEc
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK----------------RGGQEIYVG 445 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~----------------~~G~~vy~G 445 (829)
||||||+||.+|++||+||||||||||||+.++.++++.|+++|++|+||++-.| .+|+++|+|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 9999999999999999999999999999999999999999999999999965333 369999999
Q ss_pred CCCCCchhhHHHHhcCCCccccCCCCCCcceEEeecCccccccccccHHHHHhhcHHHH--H-HHHHHHhhCCCCCCCCC
Q 044554 446 PLGEHSSHLIKYFEGIPGVSTIKDGYNPATWMLEITTPSQETSLGIDFAGIYKSSELYR--R-NKELIKDLSKPAHGSKD 522 (829)
Q Consensus 446 ~~~~~~~~~~~~f~~~~~~~~~~~~~npAd~~l~v~~~~~~~~~~~d~~~~~~~S~~~~--~-~~~~~~~~~~~~~~~~~ 522 (829)
++ +++.+||++.| . +||+.+|||||++|+.+.++..+...+..+.++.-...+ . ..+.............+
T Consensus 254 ~~----~~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (613)
T KOG0061|consen 254 SP----RELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKK 327 (613)
T ss_pred CH----HHHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccccc
Confidence 97 67999999985 4 599999999999999885311000011111111100000 0 00000000000000011
Q ss_pred cccccccchhHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHhcCCCCCcCchhhHHHHHhHHHHHHHHHHH
Q 044554 523 LHFATQYAQSFFTQCMVCLWKQHWSYWRNPSYNAVRFLFTTVIALAFGTMFWDIGTKITKKQDLFNAMGSMYVAVLFLGV 602 (829)
Q Consensus 523 ~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~ 602 (829)
.+.....+||.|+..+++|.+++.+|||.+...|+++.+++|+++|++||++++ +..++++|.|++|+.+.++.+
T Consensus 328 --~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~~~~~f 402 (613)
T KOG0061|consen 328 --VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFILSFMTF 402 (613)
T ss_pred --cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHHHHHHH
Confidence 111127899999999999999999999999999999999999999999999976 456677999999999888888
Q ss_pred hhhhhhhhhhhhhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHH
Q 044554 603 KNASSVQPVVSVERTVFYRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLY 682 (829)
Q Consensus 603 ~~~~~v~p~~~~eR~vf~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~ 682 (829)
..+...++.|+.||++|.||+.+|+|+.++|++|++++|+|+.++.+++|.+|+|||+|++++..+|++|++++++..+.
T Consensus 403 ~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~ 482 (613)
T KOG0061|consen 403 LSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLV 482 (613)
T ss_pred HHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCC----
Q 044554 683 FTFYGMMAVAMTPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLES---- 758 (829)
Q Consensus 683 ~~~~g~~i~a~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~---- 758 (829)
++++|++++++.||...|..++++++..+++|+||+++.++||.||+|++|+|+++|++|+++.|||.+....|..
T Consensus 483 a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~ 562 (613)
T KOG0061|consen 483 AESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNL 562 (613)
T ss_pred HHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874444421
Q ss_pred --CCcHHHHHHhhhCCccCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044554 759 --GETVEQFLSSYFGFRHDFLGVVAAVVGALPVLFALIFAVGIKAKLLI 805 (829)
Q Consensus 759 --~~~~~~~l~~~~g~~~~~~~~~~~il~~~~v~f~~~~~~~l~~~~~~ 805 (829)
..+..+ .....+++.++.|.++.+++++.++|+++++++|++..+.
T Consensus 563 ~~~~~~~~-~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~ 610 (613)
T KOG0061|consen 563 CCESTGED-VLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKR 610 (613)
T ss_pred cccccHHH-HHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 223444 4457899999999999999999999999999999976643
No 6
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.1e-94 Score=858.38 Aligned_cols=545 Identities=26% Similarity=0.457 Sum_probs=478.1
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEEcCeecCccccccceeEEecCCCCCCCCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-YITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVT 328 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g-~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 328 (829)
+++.+|+|+|++++|||++||+||||||||||||+|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++++|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4578999999999999999999999999999999999987654 357999999998765567788999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCC-CCCCCHHHHHHHHHHHHhhhCCCcceecCCCC
Q 044554 329 VYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPG-LNGLSTEKRKRLTIAVELVANPSIIFMDEPTS 407 (829)
Q Consensus 329 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~-~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTs 407 (829)
|+|||.|++.++.|...++++++++++++++.+||.+++|+.+|+++ .++||||||||++||+||+++|++++||||||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999999988777777888899999999999999999999764 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEE-----------------EEEecCcEEEEEcCCCCCchhhHHHHhcCCCccccCCC
Q 044554 408 GLDARAAAIFMRTVRNTVDTGRTVL-----------------FLLKRGGQEIYVGPLGEHSSHLIKYFEGIPGVSTIKDG 470 (829)
Q Consensus 408 GLD~~~~~~i~~~l~~l~~~g~tvl-----------------lll~~~G~~vy~G~~~~~~~~~~~~f~~~~~~~~~~~~ 470 (829)
|||+.++.++++.|++++++|+||+ +++ ++|+++|+|++ +++.+||+++| .+||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll-~~G~~v~~G~~----~~~~~~f~~~g--~~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM-AEGRVAYLGSP----DQAVPFFSDLG--HPCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEe-eCCeEEEECCH----HHHHHHHHHcC--CCCCCC
Confidence 9999999999999999998899984 344 47999999997 57899999985 369999
Q ss_pred CCCcceEEeecCccccccc-----cccHHHHHhhcHHHHHHHHHHHhhCCCCC---CCCCcccccccchhHHHHHHHHHH
Q 044554 471 YNPATWMLEITTPSQETSL-----GIDFAGIYKSSELYRRNKELIKDLSKPAH---GSKDLHFATQYAQSFFTQCMVCLW 542 (829)
Q Consensus 471 ~npAd~~l~v~~~~~~~~~-----~~d~~~~~~~S~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~Q~~~l~~ 542 (829)
.|||||++|+++.+.+... ..++.+.|++|+.+++..+.......+.. .........++..++++|+..|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 9999999999875433211 12455667777665544433332211111 111111234577899999999999
Q ss_pred HHHHHhccChhHHHHHHHHHHHHHHHHHHHhcCCCCCcCchhhHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhH
Q 044554 543 KQHWSYWRNPSYNAVRFLFTTVIALAFGTMFWDIGTKITKKQDLFNAMGSMYVAVLFLGVKNASSVQPVVSVERTVFYRE 622 (829)
Q Consensus 543 R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~p~~~~eR~vf~RE 622 (829)
|++++.||||.+...|+++++++|+++|++||++++ +.+++++|.|++|++++++++.++....+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999987 46789999999999988888888878889999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH
Q 044554 623 RAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAVAMTPNYHISAI 702 (829)
Q Consensus 623 ~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~A~~ 702 (829)
+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCcc-ccCCC------CcHHHHHHhhhCCccC
Q 044554 703 IVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQD-RLESG------ETVEQFLSSYFGFRHD 775 (829)
Q Consensus 703 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~-~~~~~------~~~~~~l~~~~g~~~~ 775 (829)
++++++.++++|+||+++.++||+||+|++|+||++|++++++.|||++.+. +|..+ +..++++++.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999988764 56421 1125777788999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044554 776 FLGVVAAVVGALPVLFALIFAVGIKAKLL 804 (829)
Q Consensus 776 ~~~~~~~il~~~~v~f~~~~~~~l~~~~~ 804 (829)
+.|+++++|+++.++|+++++++|++..+
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~ 614 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIR 614 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999997554
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-92 Score=899.23 Aligned_cols=573 Identities=21% Similarity=0.382 Sum_probs=490.6
Q ss_pred CCceEEEEeeEEEEeCCccccC-------------------CCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHH
Q 044554 223 EPHSITFDDITYSVDMPQEMIN-------------------PGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLD 283 (829)
Q Consensus 223 ~~~~l~~~~ls~~~~~~~~~~~-------------------~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~ 283 (829)
+...++|+|++.+......... .+.+..++++|+|||++++|||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 3567999999998733211000 011234578999999999999999999999999999999
Q ss_pred HHhCCCCC--CeeEEEEEEcCeecCc--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCC----CCCHHHHHHH-H
Q 044554 284 VLAGRKTS--GYITGNIAISGYPKKQ--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPP----EVDSQTRKMF-I 354 (829)
Q Consensus 284 ~LaG~~~~--g~~~G~i~i~G~~~~~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~----~~~~~~~~~~-v 354 (829)
+|+|+.++ ...+|+|.+||.+..+ ..+++.++||+|+|.+++++||+|||.|+++++.|. ..+++++.++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99997532 1358999999998642 234566999999999999999999999999887653 2344444333 5
Q ss_pred HHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE
Q 044554 355 EEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLF 433 (829)
Q Consensus 355 ~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvll 433 (829)
+++++.+||++++|+.+|+..+++|||||||||+||++|+.+|++++|||||||||+.++.++++.|++++++ |+||++
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7789999999999999999888999999999999999999999999999999999999999999999999875 888844
Q ss_pred EEe----------------cCcEEEEEcCCCCCchhhHHHHhcCCCccccCCCCCCcceEEeecCccccc----------
Q 044554 434 LLK----------------RGGQEIYVGPLGEHSSHLIKYFEGIPGVSTIKDGYNPATWMLEITTPSQET---------- 487 (829)
Q Consensus 434 ll~----------------~~G~~vy~G~~~~~~~~~~~~f~~~~~~~~~~~~~npAd~~l~v~~~~~~~---------- 487 (829)
.+| ++|+++|+|++ +++.+||+++| . .||++.|||||++|+++++++.
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~----~~~~~yF~~lG-~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~ 339 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPA----DKAKQYFEKMG-F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVP 339 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCH----HHHHHHHHHcC-C-CCCCCCChHHHHHhccChhhhhccccccccCC
Confidence 332 36999999997 67999999995 3 6999999999999998764311
Q ss_pred cccccHHHHHhhcHHHHHHHHHHHhhCCCCC---------------CCCCcccccccchhHHHHHHHHHHHHHHHhccCh
Q 044554 488 SLGIDFAGIYKSSELYRRNKELIKDLSKPAH---------------GSKDLHFATQYAQSFFTQCMVCLWKQHWSYWRNP 552 (829)
Q Consensus 488 ~~~~d~~~~~~~S~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~ 552 (829)
....++++.|++|+.+++..++++......+ .++.....+.|..|+|+|+++|++|+++++||||
T Consensus 340 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~ 419 (1394)
T TIGR00956 340 RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNP 419 (1394)
T ss_pred CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCH
Confidence 1234789999999988776665543221100 0011112346888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCcCchhhHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHhcCCCCChHH
Q 044554 553 SYNAVRFLFTTVIALAFGTMFWDIGTKITKKQDLFNAMGSMYVAVLFLGVKNASSVQPVVSVERTVFYRERAAGLYSAFP 632 (829)
Q Consensus 553 ~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~p~~~~eR~vf~RE~~~~~Y~~~a 632 (829)
.++..|+++++++|+++|++||++++ +.+++++|.|++|+++++.++.++.++ +.+..||++|+||+.+++|++++
T Consensus 420 ~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~a 495 (1394)
T TIGR00956 420 SFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSA 495 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHHH
Confidence 99999999999999999999999987 457899999999999999999887665 55668999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 044554 633 YAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAVAMTPNYHISAIIVSSFNGLWN 712 (829)
Q Consensus 633 y~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~A~~~~~~~~~~~~ 712 (829)
|++|++++|+|+.++.+++|.+|+|||+||++++++||+|+++++++.++++++++++++++||...|+.++++++.+++
T Consensus 496 y~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~ 575 (1394)
T TIGR00956 496 DAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALS 575 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCC-------------------------C---CcHHH
Q 044554 713 VFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLES-------------------------G---ETVEQ 764 (829)
Q Consensus 713 lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~-------------------------~---~~~~~ 764 (829)
+|+||++|.++||+||+|++|+||++|++|+++.|||++.+++|.. | .++.+
T Consensus 576 lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~ 655 (1394)
T TIGR00956 576 IYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDD 655 (1394)
T ss_pred HHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHH
Confidence 9999999999999999999999999999999999999998887731 0 14568
Q ss_pred HHHhhhCCccCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044554 765 FLSSYFGFRHDFLGVVAAVVGALPVLFALIFAVGIKAKLLI 805 (829)
Q Consensus 765 ~l~~~~g~~~~~~~~~~~il~~~~v~f~~~~~~~l~~~~~~ 805 (829)
|+...||++++|+|+|++||++|+++|++++++++++++..
T Consensus 656 ~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~ 696 (1394)
T TIGR00956 656 YLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGA 696 (1394)
T ss_pred HHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88878999999999999999999999999999999999855
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=8.7e-91 Score=879.04 Aligned_cols=576 Identities=22% Similarity=0.353 Sum_probs=481.3
Q ss_pred CCceEEEEeeEEEEeCCccc-----------------cC-CC---CCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHH
Q 044554 223 EPHSITFDDITYSVDMPQEM-----------------IN-PG---VSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 281 (829)
Q Consensus 223 ~~~~l~~~~ls~~~~~~~~~-----------------~~-~~---~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTL 281 (829)
+...++|+||++........ .+ .+ .++.++.+|+|||+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 35679999999987622110 00 00 12235789999999999999999999999999999
Q ss_pred HHHHhCCCCC-CeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCC-------CCCHHHH---
Q 044554 282 LDVLAGRKTS-GYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPP-------EVDSQTR--- 350 (829)
Q Consensus 282 L~~LaG~~~~-g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~-------~~~~~~~--- 350 (829)
||+|+|+.++ ..++|+|.+||++..+...++.++||+|+|.|++++||+|||.|+++++.+. +.+.+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 9999998654 2468999999998754444677999999999999999999999998876432 1111211
Q ss_pred ---------------------HHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCC
Q 044554 351 ---------------------KMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGL 409 (829)
Q Consensus 351 ---------------------~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGL 409 (829)
...++++++.+||++++|+.+|+..+++|||||||||+||++|+.+|++++|||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12367899999999999999999889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCeEEEEEe----------------cCcEEEEEcCCCCCchhhHHHHhcCCCccccCCCCC
Q 044554 410 DARAAAIFMRTVRNTVD-TGRTVLFLLK----------------RGGQEIYVGPLGEHSSHLIKYFEGIPGVSTIKDGYN 472 (829)
Q Consensus 410 D~~~~~~i~~~l~~l~~-~g~tvllll~----------------~~G~~vy~G~~~~~~~~~~~~f~~~~~~~~~~~~~n 472 (829)
|+.++.++++.|+++++ .|+|+++.+| ++|+++|+||. +++.+||+++| . .||++.|
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~----~~~~~yF~~lG-f-~cP~~~n 441 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPR----DHILEFFESCG-F-KCPERKG 441 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCH----HHHHHHHHHcC-C-CCCCCCC
Confidence 99999999999999987 4888854333 46999999996 67999999995 4 6999999
Q ss_pred CcceEEeecCccccc------------cccccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCcccccccchhHHHHHHHH
Q 044554 473 PATWMLEITTPSQET------------SLGIDFAGIYKSSELYRRNKELIKDLSKPAHGSKDLHFATQYAQSFFTQCMVC 540 (829)
Q Consensus 473 pAd~~l~v~~~~~~~------------~~~~d~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l 540 (829)
||||++|+++..++. ....++++.|++|+.+++..++++...............++|..+++.|++.|
T Consensus 442 ~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~ 521 (1470)
T PLN03140 442 TADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKAC 521 (1470)
T ss_pred hHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHH
Confidence 999999998864321 11246889999998877655544321111000111112346889999999999
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHHHHHHHHhcCCCCCcCchhhHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhhHHH
Q 044554 541 LWKQHWSYWRNPSYNAVRFLFTTVIALAFGTMFWDIGTKITKKQDLFNAMGSMYVAVLFLGVKNASSVQPVVSVERTVFY 620 (829)
Q Consensus 541 ~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~p~~~~eR~vf~ 620 (829)
++|+++..||||.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++|+++++..+.++.+ ++.++.||+||+
T Consensus 522 ~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf~ 600 (1470)
T PLN03140 522 WDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPVFY 600 (1470)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccchhH
Confidence 9999999999999999999999999999999999998654444556778899999888887776655 577889999999
Q ss_pred hHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Q 044554 621 RERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAVAMTPNYHIS 700 (829)
Q Consensus 621 RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~A 700 (829)
|||++++|++++|++|++++|+|+.++.+++|.+|+|||+||++++++||.|+++++++.++++++++++++++|+..+|
T Consensus 601 ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A 680 (1470)
T PLN03140 601 KQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIA 680 (1470)
T ss_pred HhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccc-cCC---CCcHHHHHHhhhCCccC-
Q 044554 701 AIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDR-LES---GETVEQFLSSYFGFRHD- 775 (829)
Q Consensus 701 ~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~-~~~---~~~~~~~l~~~~g~~~~- 775 (829)
+.++++++.++++|+||++|.++||+||+|++|+||++|+++|+++|||.+.... |.+ ..+.|+.+++.+|+..+
T Consensus 681 ~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~ 760 (1470)
T PLN03140 681 NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDK 760 (1470)
T ss_pred HHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccc
Confidence 9999999999999999999999999999999999999999999999999765432 111 23345555578999754
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044554 776 -FLGVVAAVVGALPVLFALIFAVGIKAKLLI 805 (829)
Q Consensus 776 -~~~~~~~il~~~~v~f~~~~~~~l~~~~~~ 805 (829)
|.|+++++|+||+++|+++++++|++++..
T Consensus 761 ~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~ 791 (1470)
T PLN03140 761 NWYWIGVGALLGFTILFNVLFTLALTYLNPL 791 (1470)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 679999999999999999999999998843
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-83 Score=766.20 Aligned_cols=546 Identities=24% Similarity=0.447 Sum_probs=481.1
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEEcCeecCccccccceeEEecCCCCCCCCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-YITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVT 328 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g-~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 328 (829)
....+|+|+|+.++||+++.++||+||||||||++|+|..+.- ...|+|.+||++.+...-++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999965432 225799999998765444778999999999999999
Q ss_pred HHHHHHHhhhhcCCCC----CCHHHHHH-HHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceec
Q 044554 329 VYESLLYSAWLRLPPE----VDSQTRKM-FIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMD 403 (829)
Q Consensus 329 V~E~l~f~a~lr~~~~----~~~~~~~~-~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LD 403 (829)
|||+|.|+++++.|.. .+++++.+ ..|.+++.+||++|+|+++|+...||+||||||||++|.+++.+++++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998743 33333332 678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCeE-----------------EEEEecCcEEEEEcCCCCCchhhHHHHhcCCCcc
Q 044554 404 EPTSGLDARAAAIFMRTVRNTVDT-GRTV-----------------LFLLKRGGQEIYVGPLGEHSSHLIKYFEGIPGVS 465 (829)
Q Consensus 404 EPTsGLD~~~~~~i~~~l~~l~~~-g~tv-----------------llll~~~G~~vy~G~~~~~~~~~~~~f~~~~~~~ 465 (829)
|+|+|||+.++.++++.||++++. +.|. +++| .+|+++|+||. +++++||+++| .
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL-~eG~~iy~Gp~----d~~~~yFe~~G--f 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILL-SEGYQIYQGPR----DEVLPYFEDMG--F 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeee-eccceEEeccH----HHHHHHHHhcC--c
Confidence 999999999999999999999875 5555 4455 58999999997 67999999985 4
Q ss_pred ccCCCCCCcceEEeecCccccc-----------ccc-ccHHHHHhhcHHHHHHHHHHHhhCCCCCCCCCcccccccchhH
Q 044554 466 TIKDGYNPATWMLEITTPSQET-----------SLG-IDFAGIYKSSELYRRNKELIKDLSKPAHGSKDLHFATQYAQSF 533 (829)
Q Consensus 466 ~~~~~~npAd~~l~v~~~~~~~-----------~~~-~d~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 533 (829)
.||++.++|||+.++++...+. ... .|+++.|++|+.+++...+++.........+......+|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 6999999999999999832211 111 4789999999998887665543322222222333456889999
Q ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHhcCCCCCcCchhhHHHHHhHHHHHHHHHHHhhhhhhhhhhh
Q 044554 534 FTQCMVCLWKQHWSYWRNPSYNAVRFLFTTVIALAFGTMFWDIGTKITKKQDLFNAMGSMYVAVLFLGVKNASSVQPVVS 613 (829)
Q Consensus 534 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~p~~~ 613 (829)
|.|++.|++|.++.+.||..+...+.++.+++|+++|++|++.+. ++..+.+.|.|++|+++++..+..+.++ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999982 4667789999999999999888887776 5566
Q ss_pred hhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044554 614 VERTVFYRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAVAM 693 (829)
Q Consensus 614 ~eR~vf~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~ 693 (829)
+.|+||+|||...+|++++|.++..++++|+.++.+++|.+|+||++||.+++++||.++++++++..+++++.++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCC---------------
Q 044554 694 TPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLES--------------- 758 (829)
Q Consensus 694 ~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~--------------- 758 (829)
+++...|+.++++.+.+..+++||++|.++||+||+|++|+||+.|++|++++|||++.+.+|.+
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998871
Q ss_pred ---CC-------cHHHHHHhhhCCccCchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044554 759 ---GE-------TVEQFLSSYFGFRHDFLGVVAAVVGALPVLFALIFAVGIKAKLLI 805 (829)
Q Consensus 759 ---~~-------~~~~~l~~~~g~~~~~~~~~~~il~~~~v~f~~~~~~~l~~~~~~ 805 (829)
+. .+.+|++..|++++.|.|++++|++||.++|.++..+++.|+|-.
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 11 345777778889999999999999999999999999999999955
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-44 Score=358.49 Aligned_cols=201 Identities=25% Similarity=0.361 Sum_probs=175.8
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+++| ++.++|+|||+++++||+++|+||||||||||||||++...+ .+|+|.++|.+.
T Consensus 2 mi~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~ 66 (240)
T COG1126 2 MIEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDV 66 (240)
T ss_pred eEEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEec
Confidence 37899999988 567899999999999999999999999999999999997664 379999999765
Q ss_pred Cc----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQ----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.. ...|+.+|+|+|+..+||++||.||+..+-..- ...++++.++...++|+.+||.+.+|.. +..|||
T Consensus 67 ~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSG 139 (240)
T COG1126 67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSG 139 (240)
T ss_pred cchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCc
Confidence 32 346788999999999999999999999875422 2456777778899999999999999885 468999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~ 446 (829)
||||||+|||||+.+|+++++|||||+|||+...++++.+++++++|.|.+++.| ++|+++..|+
T Consensus 140 GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~ 219 (240)
T COG1126 140 GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219 (240)
T ss_pred HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999865544 4688888886
Q ss_pred CC
Q 044554 447 LG 448 (829)
Q Consensus 447 ~~ 448 (829)
++
T Consensus 220 p~ 221 (240)
T COG1126 220 PE 221 (240)
T ss_pred HH
Confidence 63
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-41 Score=351.40 Aligned_cols=205 Identities=24% Similarity=0.353 Sum_probs=179.3
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|||+.+... ..+...+|+|||++|++||+++|+|.||||||||+|++.+...+. +|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt--sG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT--SGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC--CceEEEcCEecc
Confidence 6899999888421 123467999999999999999999999999999999999976653 799999997754
Q ss_pred c------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 Q------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
. +..|+++|+++|+..++.+.||.||+.|..++. ..++++++++|.++++.+||++.+|+. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 3 345788999999999999999999999998765 367888999999999999999988875 46899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEE
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYV 444 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~ 444 (829)
|||||||+|||||+.+|+||++|||||+|||.+.+.|+++|+++.++ |.||+++.| ++|+++..
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 99999999999999999999999999999999999999999999765 999965433 47999999
Q ss_pred cCCCC
Q 044554 445 GPLGE 449 (829)
Q Consensus 445 G~~~~ 449 (829)
|+..+
T Consensus 224 G~v~~ 228 (339)
T COG1135 224 GTVSE 228 (339)
T ss_pred ccHHH
Confidence 99754
No 12
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.1e-41 Score=350.30 Aligned_cols=213 Identities=26% Similarity=0.407 Sum_probs=179.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++.+||++.| +++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y-------------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGY-------------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEE-------------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCch
Confidence 47899999998 357899999999999999999999999999999999997654 369999999987
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCC-CCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPE-VDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~-~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.. +.+.+.++||||.....+.+||+|.+.++..-+.... ...++..+.+++.++.+++.+++++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 54 4567889999999988889999999998854322111 112333457899999999999999976 48999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEe---------------cCcEEEEEc
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLK---------------RGGQEIYVG 445 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~---------------~~G~~vy~G 445 (829)
|||||+.|||||+++|++|+||||||.||...+.+++++++++++ +|+||++++| ++|+++.+|
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQG 221 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeec
Confidence 999999999999999999999999999999999999999999995 5999955433 579999999
Q ss_pred CCCC--CchhhHHHH
Q 044554 446 PLGE--HSSHLIKYF 458 (829)
Q Consensus 446 ~~~~--~~~~~~~~f 458 (829)
++.+ ..+.+.+.|
T Consensus 222 ~p~evlT~e~l~~Vy 236 (258)
T COG1120 222 TPEEVLTEENLREVY 236 (258)
T ss_pred CcchhcCHHHHHHHh
Confidence 9876 334455555
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-41 Score=343.75 Aligned_cols=187 Identities=26% Similarity=0.385 Sum_probs=167.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.+.++++++.+ +...+|+|+|+++++||+++|+||||||||||||+|+|..++. +|+|.++|.++
T Consensus 3 ~l~i~~v~~~f-------------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~--~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSF-------------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT--SGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEe-------------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCccc
Confidence 47899999988 2378999999999999999999999999999999999987653 79999999987
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
. ...+.++||+|++.++|.+||+||+.++...+. .+++++++++++.++.+||.+..|.. +++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 3 234568999999999999999999999977653 45566777899999999999999985 5799999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
||+|||||+.+|++|+||||+++||+.|+.++.+.+.++.+ .++||+++.|+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd 190 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 99999999999999999999999999999999999998764 58999999975
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.7e-40 Score=359.65 Aligned_cols=207 Identities=32% Similarity=0.465 Sum_probs=178.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.+.++||+..+. +++.+|+|||+++++||++||+||||||||||+|+|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 478899999882 147899999999999999999999999999999999998765 479999999887
Q ss_pred Cc--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 306 KQ--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 306 ~~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
.. ...++.+||++|++.+++.+||+|+|.|.+.++.+.. +.++++++++++.++|.+..++.+ ++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHH
Confidence 54 3567789999999999999999999999999886543 345567999999999998555544 5899999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCC-CeE----------------EEEEecCcEEEEEcC
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTG-RTV----------------LFLLKRGGQEIYVGP 446 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g-~tv----------------llll~~~G~~vy~G~ 446 (829)
|||++||+||+++|+++||||||+|||+.++.++.+.|++++++| +|| ++++ ++|++++.|+
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il-~~G~~~~~g~ 220 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIIL-NDGKIIAEGT 220 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEE-eCCEEEEeCC
Confidence 999999999999999999999999999999999999999999987 788 3445 5799999997
Q ss_pred CCCCchhhHHHHh
Q 044554 447 LGEHSSHLIKYFE 459 (829)
Q Consensus 447 ~~~~~~~~~~~f~ 459 (829)
+ +++.+.+.
T Consensus 221 ~----~~l~~~~~ 229 (293)
T COG1131 221 P----EELKEKFG 229 (293)
T ss_pred H----HHHHHhhc
Confidence 6 34444443
No 15
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-40 Score=343.30 Aligned_cols=203 Identities=28% Similarity=0.451 Sum_probs=169.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|. ++ .+|+|||+++++|++++|+||||||||||+|+|.|..++ .+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccc
Confidence 589999999983 23 699999999999999999999999999999999997654 379999999987
Q ss_pred CccccccceeEEecCCC--CCCCCCHHHHHHHhhhhcCC--CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQETFTCISGYCEQNDI--HSPNVTVYESLLYSAWLRLP--PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~--~~~~lTV~E~l~f~a~lr~~--~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.+..-+.++|||||... .-...||+|-+..+..-+.. ...+++ .++.++++|+.+|+.+++|+.+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~-d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKK-DKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHH-HHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 65443567999999652 23458999999987432221 112233 35779999999999999999886 7999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec--------------CcEEEEEcCC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR--------------GGQEIYVGPL 447 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~--------------~G~~vy~G~~ 447 (829)
||+|||-|||||+++|++|+|||||+|+|+.++..++++|++++++|+||+++.|+ ++++++.|++
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~ 222 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPP 222 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccCh
Confidence 99999999999999999999999999999999999999999999999999777654 3566666766
Q ss_pred CC
Q 044554 448 GE 449 (829)
Q Consensus 448 ~~ 449 (829)
++
T Consensus 223 ~~ 224 (254)
T COG1121 223 EE 224 (254)
T ss_pred hh
Confidence 54
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-40 Score=335.54 Aligned_cols=206 Identities=25% Similarity=0.343 Sum_probs=174.8
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+..|+ +++++|+|||++|++||++||+||||||||||||+|+|..+++ +|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t--~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT--SGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC--cceEEecccch
Confidence 589999999983 4578999999999999999999999999999999999977653 79999999765
Q ss_pred Cc------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC------CCCCHHHHHHHHHHHHHHcCCccchhhhccC
Q 044554 306 KQ------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP------PEVDSQTRKMFIEEVMELVELNTLRKALVGL 373 (829)
Q Consensus 306 ~~------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~------~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~ 373 (829)
.. +.+|+.+||++|+..+.+.+||.||+..+..-+.+ .-.+++++ ..+-+.++.+|+.+.+-+..+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk-~~Al~aLervgi~~~A~qra~- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK-AQALDALERVGILDKAYQRAS- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHH-HHHHHHHHHcCcHHHHHHHhc-
Confidence 32 34577899999999999999999999987543322 12334444 456688999999988887754
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEe---------------c
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLK---------------R 437 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~---------------~ 437 (829)
.|||||+|||+|||+|+.+|++++.|||+++||+.+++++|+.|+++++ +|.||++-+| +
T Consensus 147 ----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 147 ----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222 (258)
T ss_pred ----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEec
Confidence 7999999999999999999999999999999999999999999999986 4899976554 5
Q ss_pred CcEEEEEcCCCCCc
Q 044554 438 GGQEIYVGPLGEHS 451 (829)
Q Consensus 438 ~G~~vy~G~~~~~~ 451 (829)
+||++|+||+.+.+
T Consensus 223 ~G~ivfDg~~~el~ 236 (258)
T COG3638 223 AGRIVFDGPASELT 236 (258)
T ss_pred CCcEEEeCChhhhh
Confidence 79999999987643
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.1e-40 Score=335.45 Aligned_cols=215 Identities=28% Similarity=0.402 Sum_probs=182.1
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..+++++|++++ +++.|++|||++|++||+++||||||+|||||||+|.|..++. +|+|.++|.+
T Consensus 7 ~~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~--~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD--KGEILIDGED 71 (263)
T ss_pred ceEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC--CCeEEEcCcc
Confidence 358999999987 5689999999999999999999999999999999999977653 7999999998
Q ss_pred cCc------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-hhhhccCCCCC
Q 044554 305 KKQ------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-RKALVGLPGLN 377 (829)
Q Consensus 305 ~~~------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~ 377 (829)
+.+ ...++++|+++|+-.+|..+||+||+.|..+- ....+++..++.+..-++..||... .+. .+.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre--~~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----~Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE--HTKLPESLIRELVLMKLELVGLRGAAADL-----YPS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh--hccCCHHHHHHHHHHHHHhcCCChhhhhh-----Cch
Confidence 643 13467799999999999999999999997543 3456677777778888899999876 444 357
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQE 441 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~ 441 (829)
+||||+|||+++|||++.||+++|+|||||||||.++..+.++|+++.++ |.|++++.| .+||+
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999876 888855444 47999
Q ss_pred EEEcCCCC----CchhhHHHHhcC
Q 044554 442 IYVGPLGE----HSSHLIKYFEGI 461 (829)
Q Consensus 442 vy~G~~~~----~~~~~~~~f~~~ 461 (829)
+..|++++ +..-+.+||...
T Consensus 225 ~~~Gt~~el~~sd~P~v~qf~~G~ 248 (263)
T COG1127 225 IAEGTPEELLASDDPWVRQFFNGI 248 (263)
T ss_pred EEeCCHHHHHhCCCHHHHHHhcCC
Confidence 99999876 122356777654
No 18
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.7e-36 Score=381.38 Aligned_cols=408 Identities=18% Similarity=0.212 Sum_probs=264.2
Q ss_pred hcCchhhhhccCCCC------chhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHHH
Q 044554 9 AKLPVFYKQRDLRFY------PSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSALF 82 (829)
Q Consensus 9 ~~r~i~~kq~~~~fy------~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~f 82 (829)
...-|..|+++.+=+ +.++|.++.++..+.+.++-+++.+++.. .|---.-..+++.|++.++..++..++.
T Consensus 671 v~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~s~~~~lfl~~~~y~~s~I~~~ 748 (2272)
T TIGR01257 671 VKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHYSDPFILFLFLLAFSTATIMQC 748 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeecCChHHHHHHHHHHHHHHHHHH
Confidence 344566666644322 78899999998887666665555444322 1211223345667777777778888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhcc-eeCcCCcccchhhh-hhhchHHHHHHH--HHhhhcc--CCCcccc----
Q 044554 83 RLVAATGRNMVVANTFGSFTLLLILVLEGF-VLSREDIKKWWKWA-YWCSPLMYAQNA--IAVNEFL--GNSWRKF---- 152 (829)
Q Consensus 83 ~~~aa~~~~~~~A~~~~~~~~~~~~l~~Gf-~i~~~~m~~w~~Wi-~~i~P~~ya~~a--l~~NEf~--~~~~~c~---- 152 (829)
.+++++......|..+++++..+..+-..+ ..-.+.++...+|+ .-++|.++++.. ++.-|-. |..|+.-
T Consensus 749 fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e~~~~G~~w~n~~~~~ 828 (2272)
T TIGR01257 749 FLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSP 828 (2272)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhCCCcccccccccc
Confidence 999999999999999999987665543322 12234566556664 456788887654 3333332 3344321
Q ss_pred ------c-------------c------c-----cCCCCCCeeE--EeccccccccccccccccccccCCCCccccccccc
Q 044554 153 ------V-------------L------I-----PAAFGKNQAV--ISEESQSNEHDNRIGGTVQLSTNGKSGHDIRRTNS 200 (829)
Q Consensus 153 ------~-------------l------~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (829)
. + | +...+..+.. .-...+...... . ........ .......+
T Consensus 829 ~~~d~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~----~-~~~~~~~~-~~~~~~~~ 902 (2272)
T TIGR01257 829 LEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEG----C-STREERAL-EKTEPLTE 902 (2272)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCCcc----c-cccccccc-cccccccc
Confidence 0 0 1 1111111111 000111000000 0 00000000 00000000
Q ss_pred c-ccccccccccccccCCCcCCCCCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHH
Q 044554 201 T-YLTEADTRANHHQKRGMVLPFEPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKT 279 (829)
Q Consensus 201 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKT 279 (829)
. ............. -....+.....++++||++.+. .+++.+|+|+|+++++||+++|+||||||||
T Consensus 903 ~~~~~~~~~~~~~~~-~E~~~~~~~~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKS 970 (2272)
T TIGR01257 903 EMEDPEHPEGINDSF-FERELPGLVPGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGHNGAGKT 970 (2272)
T ss_pred ccccccccccccccc-cccccCCCCceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECCCCChHH
Confidence 0 0000000000000 0000011234699999999983 1246799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCeeEEEEEEcCeecCc--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHH
Q 044554 280 TLLDVLAGRKTSGYITGNIAISGYPKKQ--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEV 357 (829)
Q Consensus 280 TLL~~LaG~~~~g~~~G~i~i~G~~~~~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~v 357 (829)
||+|+|+|..++ .+|+|.++|.++.. ...++.+||++|++.+++.+||+|++.+.++++. .+.++.++.++++
T Consensus 971 TLLkiLaGLl~P--tsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~l 1045 (2272)
T TIGR01257 971 TTLSILTGLLPP--TSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAM 1045 (2272)
T ss_pred HHHHHHhcCCCC--CceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 999999997654 37999999998743 2345679999999999999999999999876652 2333445678999
Q ss_pred HHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe-
Q 044554 358 MELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK- 436 (829)
Q Consensus 358 l~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~- 436 (829)
++.+||.+..|+.+ +.||||||||++||+||+.+|++++|||||+|||+.+++.+.++|++++ +|+|||+..|
T Consensus 1046 L~~vgL~~~~~~~~-----~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHd 1119 (2272)
T TIGR01257 1046 LEDTGLHHKRNEEA-----QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHH 1119 (2272)
T ss_pred HHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECC
Confidence 99999998888765 4899999999999999999999999999999999999999999999995 5899854333
Q ss_pred --------------cCcEEEEEcCC
Q 044554 437 --------------RGGQEIYVGPL 447 (829)
Q Consensus 437 --------------~~G~~vy~G~~ 447 (829)
++|+++..|+.
T Consensus 1120 mdea~~laDrI~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1120 MDEADLLGDRIAIISQGRLYCSGTP 1144 (2272)
T ss_pred HHHHHHhCCEEEEEECCEEEEecCH
Confidence 46999999986
No 19
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-40 Score=335.55 Aligned_cols=200 Identities=25% Similarity=0.365 Sum_probs=176.5
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++|+|||+.| +++.+++|+|++|++||+++++|||||||||+||+|.+...+ .+|+|.+||+++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 6899999987 357899999999999999999999999999999999998765 3799999999875
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc--chhhhccCCCCCCCCH
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT--LRKALVGLPGLNGLST 381 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~--~~~~~vg~~~~~~LSg 381 (829)
. ..+||.+|||-|+-.+||++||.||+..--.+. ..++++.+++++++++.+||+. +.++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 357889999999999999999999999875544 4677888899999999999974 66664 579999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEc
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVG 445 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G 445 (829)
||+|||.+||||+.+|++|++|||+++||+.++.++.+.++++.++ |+||+++.| ++|+++.+|
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeC
Confidence 9999999999999999999999999999999999999999999865 999966544 478888888
Q ss_pred CCCC
Q 044554 446 PLGE 449 (829)
Q Consensus 446 ~~~~ 449 (829)
++++
T Consensus 219 ~P~~ 222 (309)
T COG1125 219 TPDE 222 (309)
T ss_pred CHHH
Confidence 8754
No 20
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-39 Score=334.45 Aligned_cols=192 Identities=27% Similarity=0.405 Sum_probs=162.5
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||+..|... .....+|++||++|++||++|||||||||||||||+|+|..++ .+|.+.++|.+..
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 4688999888532 1236899999999999999999999999999999999997655 3799999998764
Q ss_pred cc------cc-ccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchh-hhccCCCCCC
Q 044554 307 QE------TF-TCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRK-ALVGLPGLNG 378 (829)
Q Consensus 307 ~~------~~-~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~-~~vg~~~~~~ 378 (829)
.. .+ ++.+|||+|+..+.|++||+||+.....+.. .+..++++.++++++.+||.+..+ .. +.+
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKK-----PSE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCC-----chh
Confidence 21 22 4569999999999999999999998765542 222255677899999999997666 43 468
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|||||||||+|||||+.+|++++.||||.+||+.++..|++++++++++ |+|++++.|+
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999876 8999999975
No 21
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.5e-40 Score=354.42 Aligned_cols=200 Identities=28% Similarity=0.403 Sum_probs=177.8
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+..|. +..+|+|+|+++++||+++|+||||||||||||+|||..++ .+|+|.++|.++
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 589999999982 22299999999999999999999999999999999998765 379999999998
Q ss_pred Cc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
+. ...+|.+++|+|+..++|++||+||+.|+.+.+ ..++++.+++|+++.+.|+|+++.|++ +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 76 445788999999999999999999999998766 356777888999999999999999986 468999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEE----------------EEEecCcEEEEEcCC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVL----------------FLLKRGGQEIYVGPL 447 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvl----------------lll~~~G~~vy~G~~ 447 (829)
|||+|||||+++|++++||||.|.||+..+.++...|+++.++ |.|+| .++ ++|++...|++
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm-~~G~i~Q~g~p 218 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVM-NDGRIQQVGTP 218 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEE-eCCeeeecCCh
Confidence 9999999999999999999999999999999999999998765 77774 344 37999999998
Q ss_pred CC
Q 044554 448 GE 449 (829)
Q Consensus 448 ~~ 449 (829)
.+
T Consensus 219 ~e 220 (338)
T COG3839 219 LE 220 (338)
T ss_pred HH
Confidence 54
No 22
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=324.03 Aligned_cols=204 Identities=24% Similarity=0.335 Sum_probs=172.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC---CCCeeEEEEEEc
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK---TSGYITGNIAIS 301 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~---~~g~~~G~i~i~ 301 (829)
..++++||++.| +++++|+|||+.|++++++|+|||||||||||||++.... +.-+++|+|.++
T Consensus 6 ~~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 458999999998 4678999999999999999999999999999999999843 333678999999
Q ss_pred CeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCC
Q 044554 302 GYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPG 375 (829)
Q Consensus 302 G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~ 375 (829)
|+++.. ..+|+++|+|+|.+.-|| +|++||+.|+.++..-. + ++-++.||+.++...|.+ .+|++-.+
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~--~-~~ldeiVe~sLk~AaLWdEVKDrL~~s-- 146 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK--D-KELDEIVESSLKKAALWDEVKDRLHKS-- 146 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc--h-HHHHHHHHHHHHHhHhHHHhHHHhhCC--
Confidence 998743 246889999999999998 99999999998776332 2 556678999999888865 44544322
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec---------------CcE
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR---------------GGQ 440 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~---------------~G~ 440 (829)
..+|||||+||++|||+|+.+|+||+||||||+|||.+..+|.+++.+++ +.-||+++.|. .|+
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~ 225 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGE 225 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccE
Confidence 24799999999999999999999999999999999999999999999998 46899888763 588
Q ss_pred EEEEcCCC
Q 044554 441 EIYVGPLG 448 (829)
Q Consensus 441 ~vy~G~~~ 448 (829)
++.+|+.+
T Consensus 226 LvE~g~T~ 233 (253)
T COG1117 226 LVEFGPTD 233 (253)
T ss_pred EEEEcCHH
Confidence 88888863
No 23
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-39 Score=352.13 Aligned_cols=203 Identities=26% Similarity=0.397 Sum_probs=179.4
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+..| ++..+|+|+|++|++||+++|+||||||||||||+|||...+. +|+|.++|++
T Consensus 4 ~~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~--~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS--SGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEE
Confidence 358999999987 4578999999999999999999999999999999999987653 7999999999
Q ss_pred cCcc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 305 KKQE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 305 ~~~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
+... ..+|.+|+|+|+..+||+|||+||+.|+.+++ ....+++.+++++++++.++|++.+++.. .+|||||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQ 141 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQ 141 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHH
Confidence 8753 45788999999999999999999999997743 33445667789999999999999998864 6899999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCC
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~ 447 (829)
||||+|||||+.+|++|+||||.|+||..-+.++...++++.++ |.|.+++.| ++|++.-.|++
T Consensus 142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP 221 (352)
T COG3842 142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTP 221 (352)
T ss_pred HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCH
Confidence 99999999999999999999999999999999999999998764 888865544 46999999988
Q ss_pred CC
Q 044554 448 GE 449 (829)
Q Consensus 448 ~~ 449 (829)
.+
T Consensus 222 ~e 223 (352)
T COG3842 222 EE 223 (352)
T ss_pred HH
Confidence 65
No 24
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.6e-39 Score=315.91 Aligned_cols=188 Identities=28% Similarity=0.376 Sum_probs=167.3
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++|+||+..|. +.+.+|+|||+++++||++-|+||||||||||||+|.+...+ ..|+|.++|.++.
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecc
Confidence 68999999984 336799999999999999999999999999999999996554 3699999999874
Q ss_pred c------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 Q------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
. .-+||++|.|+||..+++..||+||+.|+.+.. ..++++.+++|.++++..||.+..+.. +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 125788999999999999999999999987655 345667778899999999999988875 46899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|||+||++||||++.+|++|+.||||-+||+..+.+|++++.++.+.|.||++..|
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATH 195 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEec
Confidence 99999999999999999999999999999999999999999999999999977665
No 25
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-39 Score=333.56 Aligned_cols=202 Identities=29% Similarity=0.445 Sum_probs=174.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe--
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY-- 303 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~-- 303 (829)
.++++|+++.+ +...+++|||++|+.||++||+|||||||||||++|||..++. .|.|.+||.
T Consensus 2 ~i~i~~~~~~~-------------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~--~G~I~~~~~~l 66 (345)
T COG1118 2 SIRINNVKKRF-------------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVL 66 (345)
T ss_pred ceeehhhhhhc-------------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC--CceEEECCEec
Confidence 46677777765 4567899999999999999999999999999999999987753 799999999
Q ss_pred -ecCc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 304 -PKKQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 304 -~~~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
+.++ ....|++|||+|+..+|+.|||.||+.|+.+.+ ....++.+.+.+++++++.+.|+++.++. +..|||
T Consensus 67 ~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSG 140 (345)
T COG1118 67 FDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSG 140 (345)
T ss_pred cchhccchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcCh
Confidence 5444 334578999999999999999999999998776 22334567778899999999999999985 579999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEE----------------EEEecCcEEEEE
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVL----------------FLLKRGGQEIYV 444 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvl----------------lll~~~G~~vy~ 444 (829)
||||||++||||+.+|++|+||||+++||..-+.++.+.|+++.++ |.|++ ++| ++|++...
T Consensus 141 GQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl-~~G~Ieqv 219 (345)
T COG1118 141 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVL-NQGRIEQV 219 (345)
T ss_pred HHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEe-cCCeeeee
Confidence 9999999999999999999999999999999999999999999876 77774 344 47999999
Q ss_pred cCCCC
Q 044554 445 GPLGE 449 (829)
Q Consensus 445 G~~~~ 449 (829)
|++++
T Consensus 220 g~p~e 224 (345)
T COG1118 220 GPPDE 224 (345)
T ss_pred CCHHH
Confidence 99865
No 26
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-39 Score=316.03 Aligned_cols=200 Identities=30% Similarity=0.404 Sum_probs=176.5
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|++.+|+ ...++++||||+++.||+++|+|||||||||+|++|++...|. +|.+.++|.+..
T Consensus 2 l~v~~l~K~y~------------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~--~G~v~idg~d~~ 67 (245)
T COG4555 2 LEVTDLTKSYG------------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTV 67 (245)
T ss_pred eeeeehhhhcc------------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC--CceEEEeecccc
Confidence 56778888773 2345999999999999999999999999999999999976653 799999999864
Q ss_pred c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
+ ...++.+|.++.+..++..+|++|||.|.+++. .+...+.+++.+++.+.|+|.++.|+.+| ++|.|+|
T Consensus 68 ~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~k 139 (245)
T COG4555 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMK 139 (245)
T ss_pred cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhH
Confidence 3 345788999998888999999999999999876 34556667889999999999999999986 7999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeE----------------EEEEecCcEEEEEcCCC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTV----------------LFLLKRGGQEIYVGPLG 448 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tv----------------llll~~~G~~vy~G~~~ 448 (829)
|||+|||||+++|++++|||||||||..+...+.+.++++.++|++| ++++| .|++++.|+++
T Consensus 140 qkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh-~Gevv~~gs~~ 218 (245)
T COG4555 140 QKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLH-KGEVVLEGSIE 218 (245)
T ss_pred HHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEe-cCcEEEcCCHH
Confidence 99999999999999999999999999999999999999999999998 45664 69999999875
Q ss_pred C
Q 044554 449 E 449 (829)
Q Consensus 449 ~ 449 (829)
.
T Consensus 219 ~ 219 (245)
T COG4555 219 A 219 (245)
T ss_pred H
Confidence 3
No 27
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.1e-37 Score=340.50 Aligned_cols=200 Identities=29% Similarity=0.450 Sum_probs=171.9
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+++|. ++.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEe
Confidence 3589999999982 36799999999999999999999999999999999997654 37999999998
Q ss_pred cCc--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 305 KKQ--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 305 ~~~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
... ...++.+||++|++.+++.+||+||+.+.+.++ ..+.++..++++++++.++|.+..++.+ ++||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 234577999999999999999999999876543 2233444566889999999998888876 479999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEE----------------EEEecCcEEEEEcC
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVL----------------FLLKRGGQEIYVGP 446 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvl----------------lll~~~G~~vy~G~ 446 (829)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+||+ +++ ++|++++.|+
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il-~~G~i~~~g~ 221 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVI-EEGRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE-ECCEEEEECC
Confidence 99999999999999999999999999999999999999999988899984 344 4799999998
Q ss_pred CC
Q 044554 447 LG 448 (829)
Q Consensus 447 ~~ 448 (829)
++
T Consensus 222 ~~ 223 (306)
T PRK13537 222 PH 223 (306)
T ss_pred HH
Confidence 63
No 28
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-37 Score=326.47 Aligned_cols=188 Identities=26% Similarity=0.371 Sum_probs=158.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 46889999872 35799999999999999999999999999999999997654 3799999998764
Q ss_pred c------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 Q------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
. ...++.++|++|++.+++.+||+||+.+...... ..+.++..+.++++++.+++.+..++.+ +.||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELS 138 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 3 1245679999999999999999999988753221 1234444567889999999988777654 4799
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+||+++.|
T Consensus 139 gG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH 195 (235)
T cd03261 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 99999999999999999999999999999999999999999999874 889866554
No 29
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.2e-37 Score=341.56 Aligned_cols=203 Identities=24% Similarity=0.323 Sum_probs=171.7
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||++.|... .+.+.+|+|||+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6899999998421 1235799999999999999999999999999999999997665 3799999999874
Q ss_pred cc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 QE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.. ..++.+||++|+..+++.+||+||+.+....+ ..++++.++++.++++.+||.+..|... +.||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13567999999999999999999999876532 2345556677899999999998888754 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEE
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYV 444 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~ 444 (829)
||||||++|||||+.+|++|+|||||||||+.++..+++.|++++++ |.||+++.| ++|+++..
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999875 899854333 47999999
Q ss_pred cCCC
Q 044554 445 GPLG 448 (829)
Q Consensus 445 G~~~ 448 (829)
|++.
T Consensus 223 g~~~ 226 (343)
T TIGR02314 223 GTVS 226 (343)
T ss_pred cCHH
Confidence 8864
No 30
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-37 Score=343.98 Aligned_cols=202 Identities=25% Similarity=0.364 Sum_probs=173.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 488999999872 235799999999999999999999999999999999997664 379999999987
Q ss_pred Cc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
.. ...++.+|||+|+..++|++||+||+.|+.+.+ ..++++..++++++++.++|.+..++.. +.||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 53 223578999999999999999999999986543 2345556677999999999998888764 58999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLG 448 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~ 448 (829)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++.| ++|+++..|++.
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~ 220 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPV 220 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHH
Confidence 9999999999999999999999999999999999999999875 888854332 479999999875
Q ss_pred C
Q 044554 449 E 449 (829)
Q Consensus 449 ~ 449 (829)
+
T Consensus 221 ~ 221 (356)
T PRK11650 221 E 221 (356)
T ss_pred H
Confidence 3
No 31
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.4e-37 Score=342.17 Aligned_cols=200 Identities=27% Similarity=0.379 Sum_probs=173.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|++.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 489999999882 35799999999999999999999999999999999998664 379999999987
Q ss_pred Cc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
.. ...+|.+|||+|+..++|++||+||+.|+.+.+ ..++++.+++++++++.++|++..|+.. +.||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 53 234577999999999999999999999986543 2445566778999999999999888754 58999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE----------------EEecCcEEEEEcCC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLF----------------LLKRGGQEIYVGPL 447 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvll----------------ll~~~G~~vy~G~~ 447 (829)
|||+|||||+.+|++++||||||+||..++.++.+.|+++.++ |.|+|+ ++ ++|+++..|++
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl-~~G~i~~~g~~ 219 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVM-NHGVIEQVGTP 219 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE-ECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999775 888843 44 47999999987
Q ss_pred CC
Q 044554 448 GE 449 (829)
Q Consensus 448 ~~ 449 (829)
.+
T Consensus 220 ~~ 221 (353)
T TIGR03265 220 QE 221 (353)
T ss_pred HH
Confidence 53
No 32
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-37 Score=339.55 Aligned_cols=200 Identities=25% Similarity=0.390 Sum_probs=173.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 589999999882 35799999999999999999999999999999999998764 379999999987
Q ss_pred Ccc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
... ..+|.+|||+|+..++|++||+||+.|+.+.+ ..++++.+++++++++.++|.+..++.. +.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 23577999999999999999999999987543 2345566778999999999998887754 58999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE----------------EEecCcEEEEEcCC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLF----------------LLKRGGQEIYVGPL 447 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvll----------------ll~~~G~~vy~G~~ 447 (829)
|||+|||+|+.+|++|+|||||||||+.++.++.+.|+++.++ |+|+++ ++ ++|+++..|++
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm-~~G~i~~~g~~ 221 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVM-NKGKIMQIGSP 221 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE-ECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999765 888844 44 47999999987
Q ss_pred CC
Q 044554 448 GE 449 (829)
Q Consensus 448 ~~ 449 (829)
++
T Consensus 222 ~~ 223 (351)
T PRK11432 222 QE 223 (351)
T ss_pred HH
Confidence 53
No 33
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.5e-37 Score=318.13 Aligned_cols=190 Identities=25% Similarity=0.344 Sum_probs=161.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++++.. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 678999998831 224699999999999999999999999999999999997654 3799999998764
Q ss_pred cc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 QE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.. ..++.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+++.+..++.. ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 13567999999998899999999999875432 1233344566889999999988777654 4799
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.|+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~ 197 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHD 197 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999998778999998875
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=7.3e-37 Score=340.10 Aligned_cols=200 Identities=25% Similarity=0.327 Sum_probs=173.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeE--EEEEEcCe
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYIT--GNIAISGY 303 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~--G~i~i~G~ 303 (829)
.++++||+++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. + |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA--GLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCCEEEEECCE
Confidence 589999999882 356999999999999999999999999999999999976653 6 99999999
Q ss_pred ecCc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 304 PKKQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 304 ~~~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
+... ...++.++||+|+..++|.+||+||+.|+.+.+ ..++++.+++++++++.++|++..|+.+ +.||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 8643 224567999999999999999999999986543 2445556677999999999999888764 589999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEE----------------EEecCcEEEEE
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT--GRTVLF----------------LLKRGGQEIYV 444 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~--g~tvll----------------ll~~~G~~vy~ 444 (829)
|||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.++ |.|+++ ++ ++|+++..
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl-~~G~i~~~ 220 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIM-KDGRLAAH 220 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEEEE
Confidence 999999999999999999999999999999999999999999876 788843 44 47999999
Q ss_pred cCCCC
Q 044554 445 GPLGE 449 (829)
Q Consensus 445 G~~~~ 449 (829)
|++.+
T Consensus 221 g~~~~ 225 (362)
T TIGR03258 221 GEPQA 225 (362)
T ss_pred cCHHH
Confidence 98753
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1e-36 Score=336.58 Aligned_cols=200 Identities=28% Similarity=0.416 Sum_probs=171.5
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+++| +++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y-------------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSY-------------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEE
Confidence 359999999998 246799999999999999999999999999999999997665 37999999998
Q ss_pred cCc--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 305 KKQ--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 305 ~~~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
... ...++.+||++|+..+++.+||+||+.+.+.++. .+.++..+.++++++.++|.+..++.+ +.||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 643 2345679999999999999999999997655431 233344456788999999998888776 479999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEE----------------EEEecCcEEEEEcC
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVL----------------FLLKRGGQEIYVGP 446 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvl----------------lll~~~G~~vy~G~ 446 (829)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+ +++ ++|++++.|+
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il-~~G~i~~~g~ 255 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL-EAGRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE-ECCEEEEEcC
Confidence 99999999999999999999999999999999999999999988899984 344 5799999998
Q ss_pred CC
Q 044554 447 LG 448 (829)
Q Consensus 447 ~~ 448 (829)
++
T Consensus 256 ~~ 257 (340)
T PRK13536 256 PH 257 (340)
T ss_pred HH
Confidence 63
No 36
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=315.69 Aligned_cols=188 Identities=28% Similarity=0.409 Sum_probs=158.8
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 65 (213)
T cd03259 1 LELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVT 65 (213)
T ss_pred CeeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcC
Confidence 46789998872 35799999999999999999999999999999999997654 3799999998764
Q ss_pred c-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 Q-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
. ...++.++|++|++.+++.+|++||+.+..... ..+.++..+.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 137 (213)
T cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQ 137 (213)
T ss_pred cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHH
Confidence 3 223457999999998888999999998865432 1233344456889999999988777654 479999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.|+
T Consensus 138 rl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 999999999999999999999999999999999999999864 8999888764
No 37
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=317.10 Aligned_cols=188 Identities=28% Similarity=0.391 Sum_probs=158.6
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecC
Confidence 46889999872 35799999999999999999999999999999999997654 3799999998754
Q ss_pred c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
. ...++.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 223457899999998899999999999875443 1233334456889999999988777654 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+||+++.|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~ 191 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY 191 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999876 8898766553
No 38
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=337.22 Aligned_cols=203 Identities=26% Similarity=0.381 Sum_probs=171.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 478999999872 35799999999999999999999999999999999997654 379999999987
Q ss_pred Ccc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 306 KQE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 306 ~~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
... ..++.++||+|+..++|.+||+||+.|+...+.. ...+.++..++++++++.++|.+..++.+ +.|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 432 2346799999999999999999999998653211 12344555677899999999998888754 5899999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE----------------EEecCcEEEEEcC
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLF----------------LLKRGGQEIYVGP 446 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvll----------------ll~~~G~~vy~G~ 446 (829)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+++ +| ++|+++..|+
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl-~~G~i~~~g~ 220 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVM-SQGNIEQAGT 220 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEEEEcC
Confidence 99999999999999999999999999999999999999999876 888843 44 4799999998
Q ss_pred CCC
Q 044554 447 LGE 449 (829)
Q Consensus 447 ~~~ 449 (829)
+.+
T Consensus 221 ~~~ 223 (353)
T PRK10851 221 PDQ 223 (353)
T ss_pred HHH
Confidence 743
No 39
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.7e-36 Score=338.27 Aligned_cols=200 Identities=23% Similarity=0.337 Sum_probs=172.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 489999999882 35799999999999999999999999999999999997765 379999999987
Q ss_pred Cc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
.. ...+|.+|||+|+..++|.+||+||+.|+.+.+ ..++++.+++++++++.++|.+..++.. +.||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223567999999999999999999999986533 2344555667899999999998888764 58999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLG 448 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~ 448 (829)
|||+|||+|+.+|++|+|||||||||..++..+.+.|+++.++ |.|+|++.| ++|+++..|++.
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~ 230 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999875 888854332 479999999874
No 40
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-36 Score=314.01 Aligned_cols=190 Identities=28% Similarity=0.406 Sum_probs=158.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.|... .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 69 (220)
T cd03293 1 LEVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVT 69 (220)
T ss_pred CeEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECc
Confidence 4688999987310 1125799999999999999999999999999999999997654 3799999998764
Q ss_pred ccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHH
Q 044554 307 QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKR 386 (829)
Q Consensus 307 ~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqR 386 (829)
. .++.++|++|++.+++.+||+||+.+....+. .+.++..+.++++++.+++.+..++.+ +.||||||||
T Consensus 70 ~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 139 (220)
T cd03293 70 G--PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQR 139 (220)
T ss_pred c--ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHH
Confidence 2 35679999999988888999999998754331 233344566889999999987777654 5899999999
Q ss_pred HHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 387 LTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 387 lsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+||+++.|+
T Consensus 140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 191 (220)
T cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191 (220)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 9999999999999999999999999999999999999865 48898776653
No 41
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.5e-36 Score=315.69 Aligned_cols=192 Identities=27% Similarity=0.390 Sum_probs=160.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehh
Confidence 4688999988310 0125799999999999999999999999999999999997654 3799999998764
Q ss_pred ccc-------cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCC
Q 044554 307 QET-------FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGL 379 (829)
Q Consensus 307 ~~~-------~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L 379 (829)
... .++.++|++|++.+++.+||+||+.+....+. .+.++..+.++++++.+|+.+..++.+ +.|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 311 24569999999999999999999998764431 223334456889999999988777654 479
Q ss_pred CHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 380 STEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 380 SgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+||+++.|+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 99999999999999999999999999999999999999999999987 58999998875
No 42
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.6e-38 Score=308.10 Aligned_cols=202 Identities=26% Similarity=0.385 Sum_probs=173.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.+..+|+.++| +++++++|||+.+++||+++|+|||||||||.+.++.|...+. +|.|.+||.++
T Consensus 4 ~L~a~~l~K~y-------------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~di 68 (243)
T COG1137 4 TLVAENLAKSY-------------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDI 68 (243)
T ss_pred EEEehhhhHhh-------------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceEEECCccc
Confidence 46777777766 5678999999999999999999999999999999999976543 79999999988
Q ss_pred Ccccc----ccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQETF----TCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~~~~----~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
+.... |..+||+||++..|..+||+||+......+.. +..+++++++++++++.+++.|+++..- ..|||
T Consensus 69 T~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSG 142 (243)
T COG1137 69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSG 142 (243)
T ss_pred ccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----ccccc
Confidence 65332 34589999999999999999999987766532 2233466677899999999999999863 37999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE----------------EEecCcEEEEEc
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLF----------------LLKRGGQEIYVG 445 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvll----------------ll~~~G~~vy~G 445 (829)
|||||+.|||||+.+|+.++||||++|.||.+..+|.++++.+++.|.-|++ ++ ++|+++.+|
T Consensus 143 GERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi-~~G~vla~G 221 (243)
T COG1137 143 GERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYII-SDGKVLAEG 221 (243)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEE-ecCeEEecC
Confidence 9999999999999999999999999999999999999999999998887743 44 479999999
Q ss_pred CCCC
Q 044554 446 PLGE 449 (829)
Q Consensus 446 ~~~~ 449 (829)
.+++
T Consensus 222 ~p~e 225 (243)
T COG1137 222 SPEE 225 (243)
T ss_pred CHHH
Confidence 9865
No 43
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.8e-36 Score=312.61 Aligned_cols=188 Identities=26% Similarity=0.401 Sum_probs=158.9
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 46889999872 35699999999999999999999999999999999997654 3799999998864
Q ss_pred cc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 QE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
.. ..++.++|++|++.+++..||+||+.+....+ ....++..+.++++++.+++.+..++.+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 32 22456999999998888999999998875432 1233444556889999999988777654 579999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+||+++.|+
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~ 190 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999999999999999999999999999999999999999874 8999887764
No 44
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-37 Score=308.63 Aligned_cols=199 Identities=28% Similarity=0.436 Sum_probs=166.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+..| ++.++|+|||+++++||+++|+|+||||||||||+|+|..++ .+|+|.++|+++
T Consensus 3 mL~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~di 67 (237)
T COG0410 3 MLEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDI 67 (237)
T ss_pred ceeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeec
Confidence 37889998877 558999999999999999999999999999999999997764 269999999998
Q ss_pred Ccc----ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-CccchhhhccCCCCCCCC
Q 044554 306 KQE----TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVE-LNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 306 ~~~----~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~-L~~~~~~~vg~~~~~~LS 380 (829)
... ..++.++||||....||.+||+|||..++..+.. ++......|++.+.+- |.+.+++.-| .||
T Consensus 68 t~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LS 138 (237)
T COG0410 68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLS 138 (237)
T ss_pred CCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCC
Confidence 653 2356799999999999999999999988654321 1112222677887775 6666666554 699
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE----------------EEecCcEEEE
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLF----------------LLKRGGQEIY 443 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvll----------------ll~~~G~~vy 443 (829)
|||||.++|||||+++|++|+|||||.||-|.-..+|.+.+++++++ |.||++ +| ..|++++
T Consensus 139 GGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvl-e~Griv~ 217 (237)
T COG0410 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVL-ENGRIVL 217 (237)
T ss_pred hHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEE-eCCEEEE
Confidence 99999999999999999999999999999999999999999999976 778854 44 4699999
Q ss_pred EcCCCC
Q 044554 444 VGPLGE 449 (829)
Q Consensus 444 ~G~~~~ 449 (829)
.|+.++
T Consensus 218 ~G~~~e 223 (237)
T COG0410 218 SGTAAE 223 (237)
T ss_pred ecCHHH
Confidence 999754
No 45
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.4e-36 Score=318.02 Aligned_cols=190 Identities=28% Similarity=0.397 Sum_probs=157.3
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (236)
T cd03219 1 LEVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDIT 65 (236)
T ss_pred CeeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECC
Confidence 46789998872 35699999999999999999999999999999999997654 3799999998764
Q ss_pred ccc----cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCC-------CCHHHHHHHHHHHHHHcCCccchhhhccCCC
Q 044554 307 QET----FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPE-------VDSQTRKMFIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 307 ~~~----~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~-------~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
... .++.++|++|++.+++.+||+||+.+....+.... ...++..+.++++++.+++.+..++.+
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh----
Confidence 321 23468999999999999999999998754321110 012334456889999999987776654
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+||+++.|
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH 201 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEH 201 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 589999999999999999999999999999999999999999999999878899866554
No 46
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-36 Score=317.39 Aligned_cols=191 Identities=27% Similarity=0.395 Sum_probs=158.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478999999882 35799999999999999999999999999999999997654 379999999876
Q ss_pred Ccc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 306 KQE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 306 ~~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
... ..++.++|++|++.+++.+||+||+.+....+.. ...+.++..+.++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 2245699999999888899999999987543211 00122334456788999999987777654 4799999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH 195 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTH 195 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 99999999999999999999999999999999999999999875 889866554
No 47
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-36 Score=311.57 Aligned_cols=187 Identities=24% Similarity=0.419 Sum_probs=159.4
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchh
Confidence 46789998872 35799999999999999999999999999999999997654 3799999998764
Q ss_pred ccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHH
Q 044554 307 QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKR 386 (829)
Q Consensus 307 ~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqR 386 (829)
. ..++.++|++|+..+++.+||+||+.+....+. .+..+..+.++++++.+++.+..++.+ +.||||||||
T Consensus 66 ~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (210)
T cd03269 66 I-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQK 136 (210)
T ss_pred H-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHH
Confidence 3 345679999999988889999999988654431 223344466889999999987777654 5799999999
Q ss_pred HHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 387 LTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 387 lsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+||+++.|+
T Consensus 137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~ 187 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 999999999999999999999999999999999999998778899887764
No 48
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=337.55 Aligned_cols=201 Identities=25% Similarity=0.372 Sum_probs=170.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999999882 35799999999999999999999999999999999997654 379999999886
Q ss_pred Ccc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
... ..++.++|++|+..+++.+||+||+.|....+ ..+.++..++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 432 23467999999999999999999999886543 2234455567899999999998877754 58999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLG 448 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~ 448 (829)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++.| ++|+++..|+++
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~ 219 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 219 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999765 888844322 479999999874
Q ss_pred C
Q 044554 449 E 449 (829)
Q Consensus 449 ~ 449 (829)
+
T Consensus 220 ~ 220 (369)
T PRK11000 220 E 220 (369)
T ss_pred H
Confidence 3
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.2e-36 Score=316.23 Aligned_cols=198 Identities=27% Similarity=0.376 Sum_probs=162.9
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 46889999872 35799999999999999999999999999999999997654 3699999998764
Q ss_pred cc---c-cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 307 QE---T-FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 307 ~~---~-~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
.. . .++.++|++|++.+++.+||+||+.+....+. ...++..+.++++++.+++.+..++.+ +.||||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 137 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGG 137 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 31 1 23468999999999999999999988654321 223344456889999999987777654 589999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcCC
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~~ 447 (829)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.| ++|+++..|+.
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 217 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTP 217 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCH
Confidence 999999999999999999999999999999999999999999877889865443 35666666654
No 50
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=317.63 Aligned_cols=200 Identities=24% Similarity=0.345 Sum_probs=172.0
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.+.++|++|+|+ +++.+|+|+|+++++||.++|+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 3 ~i~~~~l~~~y~------------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYP------------GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcC------------CCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 478999999983 226899999999999999999999999999999999997665 369999999986
Q ss_pred C----ccccccceeEEecCCCC-CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 306 K----QETFTCISGYCEQNDIH-SPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 306 ~----~~~~~~~~~yv~Q~~~~-~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
. ....++.+|||+|++.. +..-||.|.+.|+.... ..+.++.+++++++++.+++.+.+++. +..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 5 34567889999999754 45789999999986533 355667788999999999999998875 46899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEE
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYV 444 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~ 444 (829)
|||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.++ |+|+|++.| ++|+++++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~ 220 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD 220 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeec
Confidence 99999999999999999999999999999999999999999999987 688855433 46888888
Q ss_pred cCC
Q 044554 445 GPL 447 (829)
Q Consensus 445 G~~ 447 (829)
|++
T Consensus 221 g~p 223 (235)
T COG1122 221 GDP 223 (235)
T ss_pred CCH
Confidence 875
No 51
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.5e-36 Score=328.58 Aligned_cols=199 Identities=28% Similarity=0.411 Sum_probs=167.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 489999999882 35799999999999999999999999999999999997654 379999999876
Q ss_pred Cc--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 306 KQ--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 306 ~~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
.. ...++.+||++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+++.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 42 224567999999999999999999998755432 1233344456788999999988877765 4799999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcCC
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~~ 447 (829)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.| ++|++++.|++
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 219 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRP 219 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999888999854322 46888888875
No 52
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-36 Score=335.36 Aligned_cols=200 Identities=24% Similarity=0.364 Sum_probs=172.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 599999999872 35799999999999999999999999999999999998664 379999999986
Q ss_pred Cc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
.. ...+|.+|||+|+..++|.+||.||+.|+.+.+ ..++++.+++++++++.++|.+..++.. ++||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234678999999999999999999999986543 2345556677999999999998887754 58999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEE----------------EEEecCcEEEEEcCC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVL----------------FLLKRGGQEIYVGPL 447 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvl----------------lll~~~G~~vy~G~~ 447 (829)
|||+|||+|+.+|++|+|||||||||..++..+.+.|+++.++ |.|+| +++ ++|+++..|++
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl-~~G~i~~~g~~ 234 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIM-NRGKFVQIGEP 234 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE-eCCEEEEEcCH
Confidence 9999999999999999999999999999999999999998764 88884 344 47999999987
Q ss_pred CC
Q 044554 448 GE 449 (829)
Q Consensus 448 ~~ 449 (829)
.+
T Consensus 235 ~~ 236 (377)
T PRK11607 235 EE 236 (377)
T ss_pred HH
Confidence 43
No 53
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.7e-36 Score=312.81 Aligned_cols=192 Identities=29% Similarity=0.411 Sum_probs=161.5
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+... .+...+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 6789999988310 0112699999999999999999999999999999999997654 3799999998764
Q ss_pred c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
. ..+++.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+++.+..+..+ +.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234567999999998889999999998765433 1233444567889999999988777754 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.|+
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 195 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI 195 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999998779999888765
No 54
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-36 Score=314.21 Aligned_cols=193 Identities=26% Similarity=0.359 Sum_probs=160.0
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEc
Confidence 48999999988310 0125799999999999999999999999999999999997654 379999999886
Q ss_pred Cccc------c-ccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCC
Q 044554 306 KQET------F-TCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG 378 (829)
Q Consensus 306 ~~~~------~-~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 378 (829)
.... . ++.++|++|+..+++.+||+||+.+....+ ..+.++.+++++++++.+|+.+..++.+ +.
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4321 1 256999999998889999999999865432 1233344567889999999987776653 57
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+||+++.|+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999976 58999776653
No 55
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-36 Score=332.23 Aligned_cols=203 Identities=23% Similarity=0.312 Sum_probs=169.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|++++|... .+++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 6899999998310 1236799999999999999999999999999999999997654 3799999999864
Q ss_pred cc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 QE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.. ..++.++|++|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13567999999999999999999999876543 2334445567899999999988777654 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEE
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYV 444 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~ 444 (829)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.| ++|++++.
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999765 888854332 46899988
Q ss_pred cCCC
Q 044554 445 GPLG 448 (829)
Q Consensus 445 G~~~ 448 (829)
|+..
T Consensus 223 g~~~ 226 (343)
T PRK11153 223 GTVS 226 (343)
T ss_pred cCHH
Confidence 8764
No 56
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.3e-36 Score=314.36 Aligned_cols=188 Identities=24% Similarity=0.294 Sum_probs=154.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-----CCCeeEEEEEEc
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK-----TSGYITGNIAIS 301 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~-----~~g~~~G~i~i~ 301 (829)
++++||++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++ .+|+|.++
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~--~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLD 65 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC--CCeEEEEC
Confidence 46789998872 346999999999999999999999999999999999975 43 47999999
Q ss_pred CeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCC
Q 044554 302 GYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGL 376 (829)
Q Consensus 302 G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~ 376 (829)
|.++.. ...++.++|++|++.++ .+||+||+.+....+. ....++..++++++++.+++.+..+.... +
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~ 139 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---A 139 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---c
Confidence 987642 22456799999998877 7999999998754331 11222234567899999999877665421 2
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +||+++.|
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH 198 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTH 198 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEec
Confidence 589999999999999999999999999999999999999999999999877 88865544
No 57
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-36 Score=317.69 Aligned_cols=202 Identities=26% Similarity=0.338 Sum_probs=161.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 66 (241)
T cd03256 1 IEVENLSKTYP------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDIN 66 (241)
T ss_pred CEEeeEEEecC------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEecc
Confidence 46789998872 115799999999999999999999999999999999997654 3699999998764
Q ss_pred cc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcC-----CCCCCHHHHHHHHHHHHHHcCCccchhhhccCCC
Q 044554 307 QE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRL-----PPEVDSQTRKMFIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 307 ~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~-----~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
.. ..++.++|++|++.+++.+||+||+.+...... ......++..+.++++++.+++.+..++.+
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 142 (241)
T cd03256 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA---- 142 (241)
T ss_pred ccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc----
Confidence 31 235678999999988899999999987542110 001111233456788999999987666543
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCc
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGG 439 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G 439 (829)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.| ++|
T Consensus 143 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G 221 (241)
T cd03256 143 -DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221 (241)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 589999999999999999999999999999999999999999999999764 889865443 356
Q ss_pred EEEEEcCC
Q 044554 440 QEIYVGPL 447 (829)
Q Consensus 440 ~~vy~G~~ 447 (829)
++++.|+.
T Consensus 222 ~i~~~~~~ 229 (241)
T cd03256 222 RIVFDGPP 229 (241)
T ss_pred EEEeecCH
Confidence 77766664
No 58
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.2e-36 Score=309.56 Aligned_cols=184 Identities=29% Similarity=0.389 Sum_probs=156.7
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCccc
Confidence 46889999872 35799999999999999999999999999999999997654 3799999998764
Q ss_pred c-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 Q-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
. ...++.++|++|++.+++.+||+||+.+....+. .+ .+.++++++.+++.+..++.+ +.|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 133 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---IR----KKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQ 133 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHH
Confidence 2 2335678999999988889999999988754321 11 245788999999988777754 479999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|++++.|+
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 185 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL 185 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999998788999887764
No 59
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=6.7e-36 Score=309.89 Aligned_cols=189 Identities=26% Similarity=0.380 Sum_probs=160.0
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 66 (214)
T cd03292 1 IEFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVS 66 (214)
T ss_pred CEEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 46789999873 225699999999999999999999999999999999997654 3799999998764
Q ss_pred cc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 QE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.. ..++.++|++|++.+++.+|++||+.+....+. .+.++..+.++++++.+++++..++.+ +.||
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELS 138 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcC
Confidence 21 245679999999999999999999998754331 233444456889999999988777654 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|++++.|+
T Consensus 139 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~ 195 (214)
T cd03292 139 GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195 (214)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999998779999998875
No 60
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=6.4e-36 Score=310.13 Aligned_cols=189 Identities=27% Similarity=0.359 Sum_probs=160.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 67899999872 125699999999999999999999999999999999997654 3799999998764
Q ss_pred cc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 QE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.. .+++.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 31 23567999999998888999999999875432 1233334466889999999987666654 5799
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+||+++.|+
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~ 196 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHD 196 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999998779999998874
No 61
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-36 Score=305.69 Aligned_cols=190 Identities=26% Similarity=0.332 Sum_probs=156.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|+.. ....++|+|||+++.+||+++|+|+||||||||.++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~---------~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGG---------KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCC---------cchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 48899999998531 1123699999999999999999999999999999999997765 379999999876
Q ss_pred Ccc----ccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-hhhhccCCCCCC
Q 044554 306 KQE----TFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-RKALVGLPGLNG 378 (829)
Q Consensus 306 ~~~----~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~~ 378 (829)
... .+.+.+.+|+||+ .+.|..||++.|.-+.+. ...++.++ ++.++++.+||..- .++ .+.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~~--~i~~~L~~VgL~~~~l~R-----~P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQQ--RIAELLDQVGLPPSFLDR-----RPHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHHH--HHHHHHHHcCCCHHHHhc-----Cchh
Confidence 543 3567899999997 568999999999876542 23444333 38999999999753 333 2568
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
||||||||++|||||+.+|++|++|||||+||+..+.+|++++.++.++ +.|.+++.|
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH 200 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC
Confidence 9999999999999999999999999999999999999999999999875 678866654
No 62
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.2e-36 Score=328.75 Aligned_cols=187 Identities=28% Similarity=0.415 Sum_probs=160.3
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc--ccccceeEEecCCCCCCCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE--TFTCISGYCEQNDIHSPNV 327 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~--~~~~~~~yv~Q~~~~~~~l 327 (829)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 346799999999999999999999999999999999997654 379999999876432 3456799999999999999
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCC
Q 044554 328 TVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTS 407 (829)
Q Consensus 328 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTs 407 (829)
||+||+.+.+.++ ..+..+..++++++++.++|.+..++.+ +.||||||||++||+||+.+|++|+|||||+
T Consensus 82 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999876543 2233344566899999999998887765 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEE----------------EEecCcEEEEEcCC
Q 044554 408 GLDARAAAIFMRTVRNTVDTGRTVLF----------------LLKRGGQEIYVGPL 447 (829)
Q Consensus 408 GLD~~~~~~i~~~l~~l~~~g~tvll----------------ll~~~G~~vy~G~~ 447 (829)
|||+.++..+.+.|++++++|+||++ ++ ++|++++.|++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l-~~G~i~~~g~~ 208 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAII-DHGRIIAEGTP 208 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE-ECCEEEEECCH
Confidence 99999999999999999888999844 44 46999999876
No 63
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-36 Score=293.66 Aligned_cols=197 Identities=26% Similarity=0.343 Sum_probs=165.3
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
+..++|.++|.. .=-..++.|++||++||+||||||||||||+|+|...+. +|+|.+||.+..
T Consensus 2 l~L~~V~~~y~~---------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~--~G~i~i~g~d~t 64 (231)
T COG3840 2 LALDDVRFSYGH---------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHT 64 (231)
T ss_pred ccccceEEeeCc---------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC--CceEEEcCeecC
Confidence 456778887732 223578899999999999999999999999999987764 799999999865
Q ss_pred c-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 Q-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
. ...+|-++.++|+.++|..+||.+|+-++..-.+ ..+ ++.++.++.++..+||.++.+++. ..|||||||
T Consensus 65 ~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQ 136 (231)
T COG3840 65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQ 136 (231)
T ss_pred cCCcccCChhhhhhccccchhhhhhhhhcccCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHH
Confidence 4 3456678999999999999999999998754221 233 344567999999999999999875 489999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCC
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLG 448 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~ 448 (829)
|+++||+|+++-+||+||||+|.||+.-+.++..++.+++++ +.|++++.| ++||+.+.|+..
T Consensus 137 RvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~ 215 (231)
T COG3840 137 RVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHH
Confidence 999999999999999999999999999999999999999865 889865544 479999999863
No 64
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.1e-36 Score=335.87 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=170.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.| +++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 3 ~L~~~nls~~y-------------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEF-------------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 48899999988 246799999999999999999999999999999999997654 379999999886
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPP-EVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.. ...++.+|||+|+..+++.+||+||+.++....... ....++.+++++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 53 234677999999999889999999999864321100 0012234467899999999998888764 58999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~ 446 (829)
|||||+.|||+|+++|++|+|||||+|||+.++.+++++|++++++|+||+++.| ++|+++..|+
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999999877889844322 5799999998
Q ss_pred CCC
Q 044554 447 LGE 449 (829)
Q Consensus 447 ~~~ 449 (829)
+++
T Consensus 223 ~~e 225 (402)
T PRK09536 223 PAD 225 (402)
T ss_pred HHH
Confidence 754
No 65
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9e-36 Score=314.62 Aligned_cols=199 Identities=20% Similarity=0.336 Sum_probs=164.0
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 67899999872 35799999999999999999999999999999999997654 3799999998864
Q ss_pred c-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 307 Q-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 307 ~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
. ...++.++|++|++.+++.+||+||+.+...... ..+.++..+.++++++.+|+++..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 1235679999999988889999999987642111 1233444566889999999987777654 58999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~ 446 (829)
|||||++|||+|+.+|++++|||||+|||..++..+.+.|++++++|+|++++.| ++|++++.|+
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 219 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGD 219 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCC
Confidence 9999999999999999999999999999999999999999999877899865443 3566666665
Q ss_pred C
Q 044554 447 L 447 (829)
Q Consensus 447 ~ 447 (829)
.
T Consensus 220 ~ 220 (240)
T PRK09493 220 P 220 (240)
T ss_pred H
Confidence 4
No 66
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8.4e-36 Score=325.22 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=169.0
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++++ +++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLY-------------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEE-------------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 47899999988 236799999999999999999999999999999999997654 379999999886
Q ss_pred Ccc--ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 306 KQE--TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 306 ~~~--~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
... ..++.+||++|++.+++.+||.||+.+.+.++. .+.++..++++++++.+||.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHH
Confidence 432 345679999999999999999999998765542 233444556899999999998888765 4799999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEE----------------EEEecCcEEEEEcCC
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVL----------------FLLKRGGQEIYVGPL 447 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvl----------------lll~~~G~~vy~G~~ 447 (829)
|||++||++|+.+|++|+|||||+|||+.++..+.+.++++++ ++||+ +++ ++|++++.|+.
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l-~~G~i~~~g~~ 216 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIII-NKGKIVADKKL 216 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEE-ECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999865 78884 344 47999999986
Q ss_pred C
Q 044554 448 G 448 (829)
Q Consensus 448 ~ 448 (829)
+
T Consensus 217 ~ 217 (301)
T TIGR03522 217 D 217 (301)
T ss_pred H
Confidence 3
No 67
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-36 Score=313.24 Aligned_cols=191 Identities=24% Similarity=0.315 Sum_probs=158.5
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 6789999987310 0113799999999999999999999999999999999997654 3699999999864
Q ss_pred cc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 QE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.. ..++.++|++|++.+++.+|++||+.+....+. .+.++..+.++++++.+++.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 125679999999999999999999988754331 233444556889999999988777654 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+||+++.|
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH 199 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999875 889866544
No 68
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=8.3e-36 Score=310.59 Aligned_cols=188 Identities=26% Similarity=0.415 Sum_probs=156.6
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 468899998731 125799999999999999999999999999999999997654 3799999998764
Q ss_pred c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
. ...++.++|++|++.+++.+||+||+.+....+. .+.++..+.++++++.++|.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999988889999999988654331 233334456889999999988777654 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++||+++.|
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH 190 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTH 190 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcC
Confidence 999999999999999999999999999999999999999876 588865544
No 69
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.1e-36 Score=332.00 Aligned_cols=190 Identities=25% Similarity=0.316 Sum_probs=163.4
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc---cc----ccceeEEecCCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE---TF----TCISGYCEQNDI 322 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~---~~----~~~~~yv~Q~~~ 322 (829)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++... .. ++.++||+|+..
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 456799999999999999999999999999999999998765 379999999987532 12 567999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCccee
Q 044554 323 HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFM 402 (829)
Q Consensus 323 ~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~L 402 (829)
++|.+||+||+.+..... ..+++++.++++++++.+||++..++.. +.|||||||||+|||||+.+|++|+|
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 2345566678999999999988877754 57999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCCC
Q 044554 403 DEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLGE 449 (829)
Q Consensus 403 DEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~~ 449 (829)
||||||||+.++..+.+.++++.++ |+||+++.| ++|+++..|++++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~e 216 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDE 216 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 9999999999999999999999764 899854332 5799999998643
No 70
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-35 Score=315.59 Aligned_cols=188 Identities=24% Similarity=0.356 Sum_probs=157.4
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 78999999882 35699999999999999999999999999999999997654 3699999998764
Q ss_pred c-----------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCC
Q 044554 307 Q-----------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 307 ~-----------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
. ...++.++|++|++.+++..||+||+.++..... ....++..+.++++++.+++.+..++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 2 1235578999999988889999999987543111 1233444566889999999987766643
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.|
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH 202 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 589999999999999999999999999999999999999999999999877889866554
No 71
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=9.7e-36 Score=310.41 Aligned_cols=185 Identities=31% Similarity=0.460 Sum_probs=152.7
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 46889998772 35799999999999999999999999999999999997654 3699999998764
Q ss_pred ccc----cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc-CCccchhhhccCCCCCCCCH
Q 044554 307 QET----FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELV-ELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 307 ~~~----~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vg~~~~~~LSg 381 (829)
... .++.++|++|++.+++.+|++||+.+....+. ..+..+.++++++.+ ++.+..++.+ +.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCH
Confidence 321 24568999999999999999999988754321 122334567778877 4666666543 57999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.|
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 190 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQ 190 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999877889876655
No 72
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-36 Score=320.41 Aligned_cols=177 Identities=26% Similarity=0.315 Sum_probs=149.3
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc---c----cccceeEEecCCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE---T----FTCISGYCEQNDI 322 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~---~----~~~~~~yv~Q~~~ 322 (829)
+++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 457899999999999999999999999999999999997654 369999999876421 1 1356899999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCccee
Q 044554 323 HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFM 402 (829)
Q Consensus 323 ~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~L 402 (829)
+++.+||+||+.+....+ ..+.++..+.++++++.++|.+..++.+ +.||||||||++|||+|+.+|++|+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 898999999999875432 1233344466889999999988777764 47999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 403 DEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 403 DEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
||||+|||+.++..+.+.|++++++ |+||+++.|
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH 219 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITH 219 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 9999999999999999999999764 889865544
No 73
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-35 Score=312.66 Aligned_cols=188 Identities=24% Similarity=0.360 Sum_probs=156.4
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (242)
T cd03295 1 IEFENVTKRYG------------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIR 66 (242)
T ss_pred CEEEEEEEEeC------------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcC
Confidence 46789998872 115699999999999999999999999999999999997654 3699999998764
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc--chhhhccCCCCCCCCH
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT--LRKALVGLPGLNGLST 381 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~--~~~~~vg~~~~~~LSg 381 (829)
. ...++.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+++.+ ..++.+ +.|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCH
Confidence 2 233567899999999999999999998865433 1233444566889999999985 555543 58999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+||+++.|
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH 194 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH 194 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 9999999999999999999999999999999999999999999875 889866544
No 74
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=7.1e-36 Score=315.84 Aligned_cols=191 Identities=24% Similarity=0.273 Sum_probs=155.3
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 67899998872 135699999999999999999999999999999999997654 3799999998764
Q ss_pred cc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcC--C---CCCCHHHHHHHHHHHHHHcCCccchhhhccCCC
Q 044554 307 QE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRL--P---PEVDSQTRKMFIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 307 ~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~--~---~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
.. .+++.++|++|++.+++.+||+||+.++..... . .....++..++++++++.+++.+..++.+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 21 235679999999988999999999987532100 0 00112233456888999999987766643
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.|
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH 204 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLH 204 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 589999999999999999999999999999999999999999999999764 888876655
No 75
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=312.12 Aligned_cols=200 Identities=27% Similarity=0.361 Sum_probs=164.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378899999872 35799999999999999999999999999999999997654 369999999876
Q ss_pred Ccc----ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQE----TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~~----~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
... ..++.++|++|++.+++.+||+||+.+....+. ..+.++..+.++++++.+++.+..+..+ +.|||
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 140 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSG 140 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCH
Confidence 431 134579999999988888999999987643321 1233344567889999999987666543 58999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~ 446 (829)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.+++++++|+|++++.| ++|+++..|+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 220 (241)
T PRK10895 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCC
Confidence 9999999999999999999999999999999999999999999877899865544 3467666666
Q ss_pred C
Q 044554 447 L 447 (829)
Q Consensus 447 ~ 447 (829)
+
T Consensus 221 ~ 221 (241)
T PRK10895 221 P 221 (241)
T ss_pred H
Confidence 4
No 76
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.4e-35 Score=307.23 Aligned_cols=189 Identities=24% Similarity=0.348 Sum_probs=159.3
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECC
Confidence 46789999872 25699999999999999999999999999999999997654 3699999998763
Q ss_pred c-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 307 Q-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 307 ~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
. ...++.++|++|++.+++.+|++||+.+...... ..+.++..+.++++++.+++.+..++.+ +.|||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 138 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSG 138 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCH
Confidence 2 2245679999999998989999999988643111 2233344566889999999987777654 58999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.|+
T Consensus 139 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~ 194 (213)
T cd03262 139 GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999998888999888764
No 77
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.8e-35 Score=308.22 Aligned_cols=192 Identities=24% Similarity=0.333 Sum_probs=159.0
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 6789999988310 1225799999999999999999999999999999999997654 3799999998764
Q ss_pred ccc------cc-cceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCC
Q 044554 307 QET------FT-CISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGL 379 (829)
Q Consensus 307 ~~~------~~-~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L 379 (829)
... ++ +.++|++|++.+++.+||+||+.+....+. .+..+..+.++++++.+++.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 311 12 568999999988889999999998654321 223333456789999999987777654 579
Q ss_pred CHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 380 STEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 380 SgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|||||||++|||+|+.+|++|+|||||+|||..++..+.+.|++++++ |+||+++.|+
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999864 8899998875
No 78
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.4e-35 Score=316.69 Aligned_cols=189 Identities=21% Similarity=0.315 Sum_probs=158.0
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 489999999872 35799999999999999999999999999999999997654 379999999876
Q ss_pred Ccc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCC
Q 044554 306 KQE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGL 379 (829)
Q Consensus 306 ~~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L 379 (829)
... ..++.++|++|+..+++.+||.||+.+...... ..+.++..+.++++++.+++.+..++.+ +.|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134568999999988899999999988643211 1233334456788999999988777654 579
Q ss_pred CHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 380 STEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 380 SgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.|
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 202 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH 202 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 999999999999999999999999999999999999999999999765 889866554
No 79
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.1e-35 Score=309.77 Aligned_cols=187 Identities=26% Similarity=0.404 Sum_probs=156.4
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 67899999872 35799999999999999999999999999999999997654 3799999998764
Q ss_pred cc--ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 QE--TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~~--~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
.. ..++.++|++|++.+++.+|++||+.+....+ ..+.++..+.++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 21 22356899999988888999999998765432 1233334456889999999987776654 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEe
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLK 436 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~ 436 (829)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|++++.|
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 191 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATH 191 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 999999999999999999999999999999999999999985 5888866554
No 80
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=320.67 Aligned_cols=204 Identities=21% Similarity=0.303 Sum_probs=165.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.|... ....+.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 37899999998421 01124699999999999999999999999999999999997654 379999999887
Q ss_pred Ccc-----ccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc--cchhhhccCCCCC
Q 044554 306 KQE-----TFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN--TLRKALVGLPGLN 377 (829)
Q Consensus 306 ~~~-----~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~--~~~~~~vg~~~~~ 377 (829)
... ..++.+||++|++. .+...||+||+.+..... ..++++..++++++++.+||. +..|+. ++
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~ 143 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PF 143 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cc
Confidence 431 34567999999863 334689999999865432 244555566789999999996 555554 35
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQE 441 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~ 441 (829)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.| ++|++
T Consensus 144 ~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i 223 (287)
T PRK13637 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKC 223 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999875 899854433 36888
Q ss_pred EEEcCC
Q 044554 442 IYVGPL 447 (829)
Q Consensus 442 vy~G~~ 447 (829)
+..|++
T Consensus 224 ~~~g~~ 229 (287)
T PRK13637 224 ELQGTP 229 (287)
T ss_pred EEECCH
Confidence 888875
No 81
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.3e-36 Score=307.44 Aligned_cols=183 Identities=28% Similarity=0.396 Sum_probs=153.0
Q ss_pred EEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc
Q 044554 229 FDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE 308 (829)
Q Consensus 229 ~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~ 308 (829)
++|+++.+. +.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+....
T Consensus 2 ~~~l~~~~~------------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~ 67 (205)
T cd03226 2 IENISFSYK------------KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAK 67 (205)
T ss_pred cccEEEEeC------------CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhH
Confidence 578888772 115699999999999999999999999999999999997654 379999999886443
Q ss_pred ccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHH
Q 044554 309 TFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRL 387 (829)
Q Consensus 309 ~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRl 387 (829)
..++.++|++|++. .+..+||+||+.+..... . . ..+.++++++.+++.+..++.+ +.||||||||+
T Consensus 68 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 135 (205)
T cd03226 68 ERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRL 135 (205)
T ss_pred HhhcceEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHH
Confidence 44567999999964 345689999998764321 1 1 1245789999999988777654 58999999999
Q ss_pred HHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 388 TIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 388 sIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|++++.|+
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 185 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD 185 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 99999999999999999999999999999999999998789999988864
No 82
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-36 Score=346.54 Aligned_cols=202 Identities=25% Similarity=0.408 Sum_probs=167.1
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++|+||+|.|+.. .+..+|+|+|++++|||.+||+||||+||||+.++|-...+| .+|+|.+||.
T Consensus 463 ~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCe
Confidence 4579999999999642 457899999999999999999999999999999999998775 3799999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHH-----HHHHHHHHHHcCCccchhhhccCCC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTR-----KMFIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~-----~~~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
|+++ ..+|+.+|+|.|++.+|. -||+|||.|+.. +.+.++. ++.+++.+. ++.+-.||.+|..|
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCcc
Confidence 9865 346889999999999875 699999999864 2333332 222333443 55667899999866
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcEE
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQE 441 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~~ 441 (829)
. .||||||||++|||||++||.||||||.||+||+++...+.+.|.++.+ ++||+++.| ++|++
T Consensus 603 ~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V 680 (716)
T KOG0058|consen 603 S-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRV 680 (716)
T ss_pred c-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhccEEEEEcCCeE
Confidence 4 7999999999999999999999999999999999999999999998775 599855444 36787
Q ss_pred EEEcCC
Q 044554 442 IYVGPL 447 (829)
Q Consensus 442 vy~G~~ 447 (829)
+..|.-
T Consensus 681 ~E~G~h 686 (716)
T KOG0058|consen 681 VEMGTH 686 (716)
T ss_pred EecccH
Confidence 777753
No 83
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.4e-35 Score=306.81 Aligned_cols=188 Identities=24% Similarity=0.379 Sum_probs=155.1
Q ss_pred EEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-
Q 044554 229 FDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ- 307 (829)
Q Consensus 229 ~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~- 307 (829)
++|+++.+. .+++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~l~~~~~-----------~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~ 68 (211)
T cd03225 2 LKNLSFSYP-----------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKL 68 (211)
T ss_pred ceeEEEecC-----------CCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccC
Confidence 578888772 1125799999999999999999999999999999999997654 36999999987642
Q ss_pred --cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 308 --ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 308 --~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
...++.++|++|++. .++.+||+||+.+....+ ..+.++..+.++++++.+++.+..++.+ +.||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~ 140 (211)
T cd03225 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQK 140 (211)
T ss_pred CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHH
Confidence 234567899999974 366799999998865432 1223334456788999999987666654 57999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+||+++.|+
T Consensus 141 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~ 193 (211)
T cd03225 141 QRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHD 193 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 99999999999999999999999999999999999999998778999998874
No 84
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-35 Score=318.75 Aligned_cols=202 Identities=23% Similarity=0.315 Sum_probs=166.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKE----------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCC----------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 4899999999831 1124699999999999999999999999999999999997654 379999999987
Q ss_pred Cc---cccccceeEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQ---ETFTCISGYCEQND-IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~-~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.. ...++.++|++|++ ..++..||+||+.|+.... ..++++..++++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 23456799999997 3667789999999875432 2345555567899999999988777654 58999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe--------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK--------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~--------------~~G~~vy~G~ 446 (829)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+||+++.| ++|+++..|+
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~ 223 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTST 223 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999999875 899965544 3566666666
Q ss_pred C
Q 044554 447 L 447 (829)
Q Consensus 447 ~ 447 (829)
+
T Consensus 224 ~ 224 (279)
T PRK13650 224 P 224 (279)
T ss_pred H
Confidence 4
No 85
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2e-35 Score=304.57 Aligned_cols=185 Identities=24% Similarity=0.348 Sum_probs=156.6
Q ss_pred EeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc--
Q 044554 230 DDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ-- 307 (829)
Q Consensus 230 ~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~-- 307 (829)
+|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~ 66 (206)
T TIGR03608 2 KNISKKF-------------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLN 66 (206)
T ss_pred cceEEEE-------------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccc
Confidence 5777776 235799999999999999999999999999999999997654 37999999987431
Q ss_pred -----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 308 -----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 308 -----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
...++.++|++|++.+++.+|++||+.+....+ ..+.++..+.++++++.+++.+..++.+ +.||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G 138 (206)
T TIGR03608 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGG 138 (206)
T ss_pred hhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHH
Confidence 123567999999999888999999999865432 1233444567889999999987777654 579999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|++++.|+
T Consensus 139 ~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 193 (206)
T TIGR03608 139 EQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHD 193 (206)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999998778999998864
No 86
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-35 Score=316.32 Aligned_cols=200 Identities=27% Similarity=0.366 Sum_probs=164.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 488999999883 124699999999999999999999999999999999997654 379999999886
Q ss_pred Ccc---ccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQE---TFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~~---~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
... ..++.++|++|++. .++..||.||+.|..... ..+.++..+.++++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 432 23467999999863 445689999999864322 2334444566889999999988777654 58999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~ 446 (829)
|||||++|||||+.+|++|+|||||+|||+.++.++.+.|++++++|.||+++.| ++|++++.|+
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD 221 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999999877899855433 4677777776
Q ss_pred C
Q 044554 447 L 447 (829)
Q Consensus 447 ~ 447 (829)
+
T Consensus 222 ~ 222 (274)
T PRK13647 222 K 222 (274)
T ss_pred H
Confidence 5
No 87
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.8e-35 Score=306.22 Aligned_cols=189 Identities=26% Similarity=0.339 Sum_probs=159.5
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67899999872 124699999999999999999999999999999999997654 3799999998764
Q ss_pred cc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 QE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.. .+++.++|++|++.+++.+|++||+.+....+ ..+.++..+.++++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 13567899999998888999999998865432 2233444456788999999987766643 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|++++.|+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHD 196 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999998778899888764
No 88
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-35 Score=310.20 Aligned_cols=188 Identities=24% Similarity=0.329 Sum_probs=156.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEec
Confidence 478999999882 35699999999999999999999999999999999997654 379999999875
Q ss_pred C------c---cccccceeEEecCCCCCCCCCHHHHHHHh-hhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCC
Q 044554 306 K------Q---ETFTCISGYCEQNDIHSPNVTVYESLLYS-AWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 306 ~------~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~-a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
. . ...++.++|++|++.+++.+||+||+.+. .... ....++..+.+++.++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 0 12355789999999999999999999753 2221 1223334456889999999987777654
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|++++.|
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 199 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTH 199 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 589999999999999999999999999999999999999999999999877899866554
No 89
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-35 Score=310.51 Aligned_cols=186 Identities=26% Similarity=0.365 Sum_probs=157.4
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67899999872 35699999999999999999999999999999999997654 3699999998864
Q ss_pred ccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHH
Q 044554 307 QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKR 386 (829)
Q Consensus 307 ~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqR 386 (829)
. ..+.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+++.+..++.. ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345899999998888999999998865432 1233444567889999999987766643 5899999999
Q ss_pred HHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 387 LTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 387 lsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++.|+
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~ 188 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999999999999999999999999999999999864 58999877764
No 90
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4e-35 Score=306.88 Aligned_cols=194 Identities=24% Similarity=0.305 Sum_probs=154.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+... ..+..+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 6789999987310 0113699999999999999999999999999999999997654 3699999998764
Q ss_pred c------cccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCC
Q 044554 307 Q------ETFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLN 377 (829)
Q Consensus 307 ~------~~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~ 377 (829)
. ..+++.++|++|++ .+.+.+||+||+.+......+. ...+.....++++++.+++. +..+..+ .
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRYP-----H 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCCc-----h
Confidence 3 13456799999998 4667899999998865433211 11111122235788999985 4555543 5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999876 8999888764
No 91
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.8e-35 Score=310.47 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=160.4
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEEcCe
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---YITGNIAISGY 303 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g---~~~G~i~i~G~ 303 (829)
++++||++.+. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 67899999872 346999999999999999999999999999999999976431 12699999999
Q ss_pred ecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc----cchhhhccCC
Q 044554 304 PKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN----TLRKALVGLP 374 (829)
Q Consensus 304 ~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~----~~~~~~vg~~ 374 (829)
+... ...++.++|++|+..+++ .|++||+.+....+. ..+.++..+.++++++.+++. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 123567999999988888 999999998754331 123334456688999999997 444443
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCc
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGG 439 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G 439 (829)
++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ +|++++.| ++|
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i~~l~~G 219 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARISDRTAFFYDG 219 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHHHHhCCEEEEEECC
Confidence 3589999999999999999999999999999999999999999999999774 78755433 356
Q ss_pred EEEEEcCC
Q 044554 440 QEIYVGPL 447 (829)
Q Consensus 440 ~~vy~G~~ 447 (829)
+++..|+.
T Consensus 220 ~i~~~~~~ 227 (247)
T TIGR00972 220 ELVEYGPT 227 (247)
T ss_pred EEEEeCCH
Confidence 66666654
No 92
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-35 Score=303.83 Aligned_cols=186 Identities=35% Similarity=0.498 Sum_probs=156.4
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++| +++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccc
Confidence 46889999872 357999999999999 9999999999999999999997654 3799999998764
Q ss_pred c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
. ...++.++|++|++.+++.+||+||+.+....+. .+.++..+.++++++.+++.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 3 2345678999999999999999999998654431 223333456889999999988777654 57999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.||+++.|+
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~ 188 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHI 188 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 999999999999999999999999999999999999999976 5888777654
No 93
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.9e-35 Score=307.98 Aligned_cols=197 Identities=35% Similarity=0.568 Sum_probs=161.7
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-CeeEEEEEEcCeec
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS-GYITGNIAISGYPK 305 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~-g~~~G~i~i~G~~~ 305 (829)
+.|+|+++++... +..+.+|+|+|+++++||+++|+||||||||||+|+|+|..+. +..+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 6799999988421 1136799999999999999999999999999999999997651 12479999999887
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHH-HHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEE-VMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~-vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
.....++.++|++|++.+++.+||+||+.+......+.....+...+.+++ .++.+++.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544556779999999999999999999998765443222222223334555 889999887776643 58999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||++|||+|+.+|++++|||||+|||+.++..+.+.+++++++|.|++++.|+
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~ 202 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQ 202 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 99999999999999999999999999999999999999998778999888875
No 94
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-36 Score=303.72 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=171.9
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++.+||+.++ +...+++|||+++++||+++|+||||||||||+|+|+|..++. +|+|.++|+++.
T Consensus 5 L~v~~l~k~F-------------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~--~G~v~~~G~~it 69 (250)
T COG0411 5 LEVRGLSKRF-------------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS--SGTVIFRGRDIT 69 (250)
T ss_pred eeeccceeec-------------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC--CceEEECCcccC
Confidence 6678888776 6689999999999999999999999999999999999977653 699999999876
Q ss_pred ccc----cccceeEEecCCCCCCCCCHHHHHHHhhhhc--------CCCC-CCHHHHHHHHHHHHHHcCCccchhhhccC
Q 044554 307 QET----FTCISGYCEQNDIHSPNVTVYESLLYSAWLR--------LPPE-VDSQTRKMFIEEVMELVELNTLRKALVGL 373 (829)
Q Consensus 307 ~~~----~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr--------~~~~-~~~~~~~~~v~~vl~~l~L~~~~~~~vg~ 373 (829)
... .+..++.-+|...+|+++||.||+..++..+ .+.. .+.++-.+++.++++.+||.+.+|+..|
T Consensus 70 ~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~- 148 (250)
T COG0411 70 GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG- 148 (250)
T ss_pred CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-
Confidence 432 2456788999999999999999999886533 1221 1344556788999999999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE----------------EEe
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLF----------------LLK 436 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvll----------------ll~ 436 (829)
+||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|+++.++ |.||++ +|
T Consensus 149 ----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl- 223 (250)
T COG0411 149 ----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVL- 223 (250)
T ss_pred ----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEec-
Confidence 69999999999999999999999999999999999999999999999984 689844 44
Q ss_pred cCcEEEEEcCCCC
Q 044554 437 RGGQEIYVGPLGE 449 (829)
Q Consensus 437 ~~G~~vy~G~~~~ 449 (829)
+.|+++..|++++
T Consensus 224 ~~G~~IAeG~P~e 236 (250)
T COG0411 224 NYGEVIAEGTPEE 236 (250)
T ss_pred cCCcCcccCCHHH
Confidence 3588888898854
No 95
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.1e-35 Score=311.51 Aligned_cols=189 Identities=21% Similarity=0.294 Sum_probs=157.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 489999999882 35799999999999999999999999999999999997654 369999999875
Q ss_pred Cc----------------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccch-h
Q 044554 306 KQ----------------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLR-K 368 (829)
Q Consensus 306 ~~----------------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-~ 368 (829)
.. ..+++.++|++|++.+++.+||+||+.++..... ....++..++++++++.+|+.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1235679999999999999999999987542111 123344456788999999997653 4
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 369 ALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 369 ~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.. ++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+||+++.|
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH 210 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 43 3589999999999999999999999999999999999999999999999877999866544
No 96
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2e-35 Score=306.34 Aligned_cols=187 Identities=27% Similarity=0.397 Sum_probs=153.2
Q ss_pred EEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc
Q 044554 229 FDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE 308 (829)
Q Consensus 229 ~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~ 308 (829)
++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~-- 64 (213)
T cd03235 2 VEDLTVSYG-------------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE-- 64 (213)
T ss_pred cccceeEEC-------------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--
Confidence 567888772 35799999999999999999999999999999999997654 3699999998653
Q ss_pred ccccceeEEecCCCCC--CCCCHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 309 TFTCISGYCEQNDIHS--PNVTVYESLLYSAWLRLPP-EVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 309 ~~~~~~~yv~Q~~~~~--~~lTV~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
..++.++|++|++.+. +.+||+||+.+....+... ....++..+.++++++.+++.+..++.+ ..|||||||
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 139 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQ 139 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 3456799999997653 3489999998864321100 0112233456889999999987776654 579999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.|+
T Consensus 140 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~ 191 (213)
T cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHD 191 (213)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999999999999999999999999999999999998788999988864
No 97
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-35 Score=318.51 Aligned_cols=203 Identities=24% Similarity=0.297 Sum_probs=163.7
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|++++|... ....+.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYK--------TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCC--------CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 7899999998421 00124699999999999999999999999999999999997654 3699999999763
Q ss_pred c-------cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCC
Q 044554 307 Q-------ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLN 377 (829)
Q Consensus 307 ~-------~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~ 377 (829)
. ...++.+|||+|++. .+...||+||+.|+.... ..+.++..++++++++.++|. +..++.+ +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 2 134567999999862 233579999999875422 234444456789999999996 5666543 5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQE 441 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~ 441 (829)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.||+++.| ++|++
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i 224 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTV 224 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999765 889854332 46888
Q ss_pred EEEcCC
Q 044554 442 IYVGPL 447 (829)
Q Consensus 442 vy~G~~ 447 (829)
++.|++
T Consensus 225 ~~~g~~ 230 (290)
T PRK13634 225 FLQGTP 230 (290)
T ss_pred EEECCH
Confidence 888875
No 98
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-35 Score=315.51 Aligned_cols=199 Identities=21% Similarity=0.308 Sum_probs=164.8
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECC
Confidence 67899999873 224599999999999999999999999999999999997654 3799999999864
Q ss_pred c----cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 307 Q----ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 307 ~----~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
. ...++.++|++|++. .+...||.||+.+..... ..+.++..+.++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 233567999999975 356789999998865432 2344444567889999999988777654 58999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcEEEEEcCC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQEIYVGPL 447 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~~vy~G~~ 447 (829)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.||+++.| ++|++++.|+.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~ 219 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEP 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999999878999966544 35777777765
No 99
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-35 Score=293.25 Aligned_cols=210 Identities=27% Similarity=0.401 Sum_probs=171.4
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
|+.+|+||++ ..+++|++||++++|||++||+||||||||||||.|+|...++ +|++.+||.+.+
T Consensus 2 i~a~nls~~~-------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSL-------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEe-------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcChh
Confidence 6789999987 3478999999999999999999999999999999999976543 699999999875
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
. ....+..+.++|+..+-...||+|-+.++..-... ..+.++..+.+++.++..++.+++.+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 4 23445668999999998889999999998542211 1222344566889999999999988754 5799999
Q ss_pred HHHHHHHHHhhh------CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEE----------------EEEecCcEE
Q 044554 384 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVL----------------FLLKRGGQE 441 (829)
Q Consensus 384 rqRlsIa~aL~~------~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvl----------------lll~~~G~~ 441 (829)
||||.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+ ++| ++||+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll-~~Grv 219 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLL-HQGRV 219 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeee-eCCeE
Confidence 999999999986 4458999999999999999999999999999987773 344 47999
Q ss_pred EEEcCCCC--CchhhHHHH
Q 044554 442 IYVGPLGE--HSSHLIKYF 458 (829)
Q Consensus 442 vy~G~~~~--~~~~~~~~f 458 (829)
+..|++.+ ..+.+...|
T Consensus 220 ~a~g~p~~vlt~Etl~~vy 238 (259)
T COG4559 220 IASGSPQDVLTDETLERVY 238 (259)
T ss_pred eecCCHHHhcCHHHHHHHh
Confidence 99999866 233344444
No 100
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.4e-34 Score=365.84 Aligned_cols=208 Identities=25% Similarity=0.407 Sum_probs=176.0
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.|+ .+++.+|+|||+.+++||++||+||||||||||+|+|+|..++. +|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~-----------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt--sG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYS-----------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT--SGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEEC-----------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC--ccEEEECCEEC
Confidence 599999999983 12367999999999999999999999999999999999976543 79999999987
Q ss_pred Cc--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 306 KQ--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 306 ~~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
.. ...++.+||++|++.+++.+||+|++.+.++++. .++++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2245679999999999999999999998776652 333444567889999999999888876 4799999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcCCC
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGPLG 448 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~~~ 448 (829)
|||++||+||+.+|+|++|||||+|||+.+++.+.+.|++++++|+|||+..| ++|+++..|++
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~- 2154 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTI- 2154 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH-
Confidence 99999999999999999999999999999999999999999888999854322 47999999986
Q ss_pred CCchhhHHHH
Q 044554 449 EHSSHLIKYF 458 (829)
Q Consensus 449 ~~~~~~~~~f 458 (829)
+++.+-|
T Consensus 2155 ---q~Lk~~~ 2161 (2272)
T TIGR01257 2155 ---QHLKSKF 2161 (2272)
T ss_pred ---HHHHHHh
Confidence 4455544
No 101
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-35 Score=319.45 Aligned_cols=205 Identities=23% Similarity=0.309 Sum_probs=164.8
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|... ......+|+|+|+++++||+++|+||||||||||+|+|+|..++. +|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~~ 71 (305)
T PRK13651 2 QIKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEeceec
Confidence 37899999998421 011246999999999999999999999999999999999976553 69999988653
Q ss_pred Cc---------------------------cccccceeEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHH
Q 044554 306 KQ---------------------------ETFTCISGYCEQND-IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEV 357 (829)
Q Consensus 306 ~~---------------------------~~~~~~~~yv~Q~~-~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~v 357 (829)
.. ...++.+|||+|++ ..+...||+||+.|+.... ..++++..++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~ 148 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKY 148 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHH
Confidence 10 12356799999985 3344579999999875432 23455556678999
Q ss_pred HHHcCCc-cchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 358 MELVELN-TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 358 l~~l~L~-~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
++.+||. +..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.|
T Consensus 149 l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtH 223 (305)
T PRK13651 149 IELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223 (305)
T ss_pred HHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 9999996 5666643 589999999999999999999999999999999999999999999999878999854433
Q ss_pred ---------------cCcEEEEEcCCC
Q 044554 437 ---------------RGGQEIYVGPLG 448 (829)
Q Consensus 437 ---------------~~G~~vy~G~~~ 448 (829)
++|++++.|++.
T Consensus 224 d~~~~~~~adrv~vl~~G~i~~~g~~~ 250 (305)
T PRK13651 224 DLDNVLEWTKRTIFFKDGKIIKDGDTY 250 (305)
T ss_pred CHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 468888888763
No 102
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-35 Score=309.69 Aligned_cols=202 Identities=23% Similarity=0.282 Sum_probs=162.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEEC
Confidence 489999999872 35799999999999999999999999999999999997654 379999999876
Q ss_pred Cccc----cccceeEEecCCCCCCCCCHHHHHHHhhhhcCC----------CCC--CHHHHHHHHHHHHHHcCCccchhh
Q 044554 306 KQET----FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP----------PEV--DSQTRKMFIEEVMELVELNTLRKA 369 (829)
Q Consensus 306 ~~~~----~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~----------~~~--~~~~~~~~v~~vl~~l~L~~~~~~ 369 (829)
.... .+..++|++|++.+++.+||+||+.++...... ... ..++..+.+++.++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 4321 233589999999999999999999986431110 000 112233567888999999877776
Q ss_pred hccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe------------
Q 044554 370 LVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK------------ 436 (829)
Q Consensus 370 ~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~------------ 436 (829)
.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.|
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i 224 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRI 224 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE
Confidence 54 579999999999999999999999999999999999999999999999875 888855433
Q ss_pred ---cCcEEEEEcCC
Q 044554 437 ---RGGQEIYVGPL 447 (829)
Q Consensus 437 ---~~G~~vy~G~~ 447 (829)
++|++++.|+.
T Consensus 225 ~~l~~g~i~~~~~~ 238 (255)
T PRK11300 225 YVVNQGTPLANGTP 238 (255)
T ss_pred EEEECCeEEecCCH
Confidence 35777777665
No 103
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-35 Score=314.63 Aligned_cols=201 Identities=25% Similarity=0.303 Sum_probs=166.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 4899999998831 234699999999999999999999999999999999997664 379999999986
Q ss_pred Ccc---ccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQE---TFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~~---~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
... ..++.++|++|++. .++..||.||+.+..... ..+.++..++++++++.++|.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 432 23567999999973 567789999999875432 2334445567899999999998877764 47999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe--------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK--------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~--------------~~G~~vy~G~ 446 (829)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.| ++|++++.|+
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~ 223 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGT 223 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999999876 889865443 3577777776
Q ss_pred C
Q 044554 447 L 447 (829)
Q Consensus 447 ~ 447 (829)
.
T Consensus 224 ~ 224 (279)
T PRK13635 224 P 224 (279)
T ss_pred H
Confidence 4
No 104
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.3e-35 Score=298.55 Aligned_cols=177 Identities=25% Similarity=0.324 Sum_probs=148.6
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-----cccccceeEEecCCC-CC
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ-----ETFTCISGYCEQNDI-HS 324 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~-----~~~~~~~~yv~Q~~~-~~ 324 (829)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 35699999999999999999999999999999999997654 37999999987631 123567899999973 33
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecC
Q 044554 325 PNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDE 404 (829)
Q Consensus 325 ~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDE 404 (829)
...||+||+.+..... ..+.++..+.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999999865422 1233344456889999999988777654 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 405 PTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 405 PTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||+|||+.++..+.+.|++++++|+||+++.|+
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 999999999999999999998889999999875
No 105
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-35 Score=289.89 Aligned_cols=189 Identities=26% Similarity=0.400 Sum_probs=166.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.+..++++.+|+. ..+.+|+|+|+++.+||.++++||||||||||||+++|..++ ..|+|.+||.++
T Consensus 3 ~l~~~~~sl~y~g-----------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i 69 (259)
T COG4525 3 MLNVSHLSLSYEG-----------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRI 69 (259)
T ss_pred eeehhheEEecCC-----------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEec
Confidence 3567788888742 225699999999999999999999999999999999998775 379999999988
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
+...-. .|.|+|++.++|.+||.||+.|+.+++ .+++++|.+.+.+.+...||++..+..+ -+|||||||
T Consensus 70 ~gPgae--rgvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQ 139 (259)
T COG4525 70 EGPGAE--RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQ 139 (259)
T ss_pred cCCCcc--ceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHH
Confidence 653322 389999999999999999999999887 5788999999999999999999887765 489999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
|+.|||||+.+|++|+||||+++||.-+++++.++|-++.+ .|+.++++.|+
T Consensus 140 RvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ 192 (259)
T COG4525 140 RVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHD 192 (259)
T ss_pred HHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 99999999999999999999999999999999999988764 59999888763
No 106
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-35 Score=315.47 Aligned_cols=201 Identities=24% Similarity=0.389 Sum_probs=165.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 589999999983 235699999999999999999999999999999999997654 379999999886
Q ss_pred Cc-----cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCC
Q 044554 306 KQ-----ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGL 379 (829)
Q Consensus 306 ~~-----~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L 379 (829)
.. ..+++.++|++|++. .+...||+||+.+..... ..+.++..+.++++++.++|.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 31 234567999999863 334689999998865322 2334444567899999999988777754 589
Q ss_pred CHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEE
Q 044554 380 STEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIY 443 (829)
Q Consensus 380 SgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy 443 (829)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.| ++|++++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~ 222 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL 222 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999875 899854332 4688888
Q ss_pred EcCCC
Q 044554 444 VGPLG 448 (829)
Q Consensus 444 ~G~~~ 448 (829)
.|+.+
T Consensus 223 ~g~~~ 227 (283)
T PRK13636 223 QGNPK 227 (283)
T ss_pred eCCHH
Confidence 88763
No 107
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.3e-35 Score=300.74 Aligned_cols=185 Identities=22% Similarity=0.332 Sum_probs=158.3
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 67899999872 35799999999999999999999999999999999997654 3699999998764
Q ss_pred c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
. ...++.++|++|++.+++.+||+||+.+....+. . +..+.++++++.+|+.+..++.+ +.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345678999999988899999999988754321 1 12345789999999987777654 57999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||++||++|+++|++++|||||+|||+.++..+.+.|++++++|+|++++.|+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 188 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQ 188 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 99999999999999999999999999999999999999998778999998875
No 108
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.3e-34 Score=318.93 Aligned_cols=215 Identities=21% Similarity=0.251 Sum_probs=169.8
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.+.............+...+|+|||+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 589999999985311000000011236799999999999999999999999999999999997654 379999999986
Q ss_pred Ccc------ccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCC
Q 044554 306 KQE------TFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGL 376 (829)
Q Consensus 306 ~~~------~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~ 376 (829)
... .+++.++||+|++ .++|.+||.||+.+......+ ..++++.+++++++++.++|. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2356799999997 578899999999886543211 234556667788999999994 344543 4
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcE
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQ 440 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~ 440 (829)
+.||||||||++|||||+.+|++|++||||+|||..++.++++.|+++.++ |.|+|++.| ++|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 689999999999999999999999999999999999999999999999875 888854332 4699
Q ss_pred EEEEcCCC
Q 044554 441 EIYVGPLG 448 (829)
Q Consensus 441 ~vy~G~~~ 448 (829)
++..|+.+
T Consensus 240 ive~g~~~ 247 (331)
T PRK15079 240 AVELGTYD 247 (331)
T ss_pred EEEEcCHH
Confidence 99999864
No 109
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.5e-34 Score=302.03 Aligned_cols=182 Identities=25% Similarity=0.368 Sum_probs=153.9
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecc
Confidence 46789998872 35799999999999999999999999999999999997654 3799999998765
Q ss_pred ccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHH
Q 044554 307 QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKR 386 (829)
Q Consensus 307 ~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqR 386 (829)
... .+.++|++|++.+++.+|++||+.+....+. .+ .+.++++++.+++++..+..+ ..||||||||
T Consensus 66 ~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 132 (223)
T TIGR03740 66 RKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQR 132 (223)
T ss_pred ccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHH
Confidence 322 2568999999988889999999987654331 12 134788999999998777654 4799999999
Q ss_pred HHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 387 LTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 387 lsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+||+++.|
T Consensus 133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH 182 (223)
T TIGR03740 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH 182 (223)
T ss_pred HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 99999999999999999999999999999999999999877888865444
No 110
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-35 Score=309.77 Aligned_cols=181 Identities=22% Similarity=0.284 Sum_probs=154.8
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|++++|. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 599999999882 35699999999999999999999999999999999997654 369999999875
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
. ..++.++|++|++.+++.+||+||+.+... . ...+.++++++.+++.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 345679999999988888999999987521 0 12245788999999987766653 589999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+||+++.|+
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 99999999999999999999999999999999999999865 48899877664
No 111
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-35 Score=307.41 Aligned_cols=186 Identities=24% Similarity=0.360 Sum_probs=153.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 488999999872 35799999999999999999999999999999999997654 369999999876
Q ss_pred Ccc----ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc-CCccchhhhccCCCCCCCC
Q 044554 306 KQE----TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELV-ELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 306 ~~~----~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vg~~~~~~LS 380 (829)
... ..++.++|++|+..+++.+||+||+.++.... +.++..+.++++++.+ ++.+..+.. ++.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 432 13457999999998899999999998864221 1122234567777777 466555543 35799
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+||+++.|
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQ 195 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999888999866544
No 112
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-34 Score=306.21 Aligned_cols=189 Identities=25% Similarity=0.330 Sum_probs=154.8
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 78999999872 35799999999999999999999999999999999997654 3699999998764
Q ss_pred cc----ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC--C---CCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 307 QE----TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP--P---EVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 307 ~~----~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~--~---~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.. ..++.++|++|++.+++.+||+||+.+....... . ....++..++++++++.+++.+..++.+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 31 1234699999999999999999999886432100 0 0112234456889999999987776654 5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++||+++.|
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH 200 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEH 200 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEC
Confidence 7999999999999999999999999999999999999999999999976 688865443
No 113
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-35 Score=315.95 Aligned_cols=203 Identities=19% Similarity=0.312 Sum_probs=163.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.|... ....+.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKG--------TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCC--------CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 47899999998411 01124699999999999999999999999999999999997654 369999999886
Q ss_pred Cc-------cccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCC
Q 044554 306 KQ-------ETFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPG 375 (829)
Q Consensus 306 ~~-------~~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~ 375 (829)
.. ...++.+|||+|++ .+++ .||.||+.++.... ..+.++..++++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 42 13456799999985 3444 59999999875322 234445556789999999996 566654
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEe---------------cCc
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLK---------------RGG 439 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~---------------~~G 439 (829)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+||+++.| ++|
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G 222 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEG 222 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 358999999999999999999999999999999999999999999999976 4899855433 357
Q ss_pred EEEEEcCC
Q 044554 440 QEIYVGPL 447 (829)
Q Consensus 440 ~~vy~G~~ 447 (829)
+++..|++
T Consensus 223 ~i~~~g~~ 230 (286)
T PRK13646 223 SIVSQTSP 230 (286)
T ss_pred EEEEECCH
Confidence 88877775
No 114
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-35 Score=315.73 Aligned_cols=203 Identities=24% Similarity=0.331 Sum_probs=164.6
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.|... ....+.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 6899999998411 01123699999999999999999999999999999999997654 3799999999863
Q ss_pred c-------cccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCC
Q 044554 307 Q-------ETFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGL 376 (829)
Q Consensus 307 ~-------~~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~ 376 (829)
. ...++.+|||+|++ .++ ..||.||+.|+.... ..++++.+++++++++.++|. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLF-EETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcc-cchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 12456799999986 344 469999999875432 234455567789999999995 455543 3
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEE
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQE 441 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~ 441 (829)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.| ++|++
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i 222 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHI 222 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 589999999999999999999999999999999999999999999999878999954332 46899
Q ss_pred EEEcCCC
Q 044554 442 IYVGPLG 448 (829)
Q Consensus 442 vy~G~~~ 448 (829)
++.|+++
T Consensus 223 ~~~g~~~ 229 (288)
T PRK13643 223 ISCGTPS 229 (288)
T ss_pred EEECCHH
Confidence 9988864
No 115
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=9.6e-35 Score=310.85 Aligned_cols=205 Identities=27% Similarity=0.354 Sum_probs=164.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEEcCee
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-YITGNIAISGYP 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g-~~~G~i~i~G~~ 304 (829)
.++++||++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 489999999872 357999999999999999999999999999999999976542 135999999987
Q ss_pred cCc--------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCC-----CCCHHHHHHHHHHHHHHcCCccchhhhc
Q 044554 305 KKQ--------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPP-----EVDSQTRKMFIEEVMELVELNTLRKALV 371 (829)
Q Consensus 305 ~~~--------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~-----~~~~~~~~~~v~~vl~~l~L~~~~~~~v 371 (829)
+.. ...++.++|++|++.+++.+||+||+.+......+. ....++.+++++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 632 123456899999998899999999998764211100 0112233457889999999987777654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe--------------
Q 044554 372 GLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK-------------- 436 (829)
Q Consensus 372 g~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~-------------- 436 (829)
..||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||++.|
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999864 888855433
Q ss_pred -cCcEEEEEcCCC
Q 044554 437 -RGGQEIYVGPLG 448 (829)
Q Consensus 437 -~~G~~vy~G~~~ 448 (829)
++|++++.|+.+
T Consensus 226 l~~g~i~~~g~~~ 238 (262)
T PRK09984 226 LRQGHVFYDGSSQ 238 (262)
T ss_pred EECCEEEEeCCHH
Confidence 357777777654
No 116
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.4e-34 Score=307.81 Aligned_cols=188 Identities=24% Similarity=0.330 Sum_probs=156.9
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 46899999882 35799999999999999999999999999999999997654 3799999998763
Q ss_pred c----------------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhh
Q 044554 307 Q----------------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKAL 370 (829)
Q Consensus 307 ~----------------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~ 370 (829)
. ...++.++|++|++.+++..||.||+.++.... .....++..+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999999999999998763211 1123344456688999999998777664
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 371 VGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 371 vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
. +.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++.|
T Consensus 144 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 205 (252)
T TIGR03005 144 P-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTH 205 (252)
T ss_pred h-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 3 589999999999999999999999999999999999999999999999875 889876654
No 117
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-35 Score=308.54 Aligned_cols=191 Identities=24% Similarity=0.281 Sum_probs=155.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g---~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 478999999872 356999999999999999999999999999999999975421 2479999999
Q ss_pred eecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc----hhhhccCCC
Q 044554 303 YPKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL----RKALVGLPG 375 (829)
Q Consensus 303 ~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~----~~~~vg~~~ 375 (829)
.++.. ...++.++|++|++.+++.+||+||+.+....+.. ..+.++..+.++++++.+++.+. .++.
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87642 23456799999999888899999999987543211 11233444568899999998642 3332
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|++++.|
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH 203 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTH 203 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 458999999999999999999999999999999999999999999999865 788866554
No 118
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-34 Score=317.58 Aligned_cols=203 Identities=22% Similarity=0.311 Sum_probs=163.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|+.. ....+.+|+|||+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 59999999998421 01124699999999999999999999999999999999997664 379999999875
Q ss_pred Cc-------------------cccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 044554 306 KQ-------------------ETFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN 364 (829)
Q Consensus 306 ~~-------------------~~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~ 364 (829)
.. ...++.++||+|++ .+++ .||+||+.++.... ..+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13456799999986 3454 59999998875321 234444456788999999996
Q ss_pred -cchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe-------
Q 044554 365 -TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK------- 436 (829)
Q Consensus 365 -~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~------- 436 (829)
+..++. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+||+++.|
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~ 241 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLE 241 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 455543 3589999999999999999999999999999999999999999999999878999855433
Q ss_pred --------cCcEEEEEcCC
Q 044554 437 --------RGGQEIYVGPL 447 (829)
Q Consensus 437 --------~~G~~vy~G~~ 447 (829)
++|+++..|++
T Consensus 242 ~adri~vl~~G~i~~~g~~ 260 (320)
T PRK13631 242 VADEVIVMDKGKILKTGTP 260 (320)
T ss_pred hCCEEEEEECCEEEEeCCH
Confidence 36888888875
No 119
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.4e-34 Score=303.22 Aligned_cols=193 Identities=26% Similarity=0.394 Sum_probs=160.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 48999999988310 0113699999999999999999999999999999999997654 379999999876
Q ss_pred Cccc------c-ccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCC
Q 044554 306 KQET------F-TCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG 378 (829)
Q Consensus 306 ~~~~------~-~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 378 (829)
.... . ++.++|++|++.+++.+||.||+.+....+ ..+.++..++++++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4311 1 246899999998889999999998865332 1233344567889999999987777654 47
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.||+++.|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999765 8899988764
No 120
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=9.2e-35 Score=298.10 Aligned_cols=185 Identities=23% Similarity=0.330 Sum_probs=157.0
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (198)
T TIGR01189 1 LAARNLACSR-------------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALA 65 (198)
T ss_pred CEEEEEEEEE-------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcc
Confidence 4678999887 235799999999999999999999999999999999997654 3799999998754
Q ss_pred c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
. ..+++.++|++|++.+++.+||+||+.+....+. . + .+.++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (198)
T TIGR01189 66 EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQ 133 (198)
T ss_pred cchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHH
Confidence 2 2245678999999888888999999987654321 1 1 234788999999988777654 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKRG 438 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~~ 438 (829)
||++|||+|+.+|++++|||||+|||..++..+.+.|++++++|+|++++.|+.
T Consensus 134 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 134 RRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 999999999999999999999999999999999999999988899999998863
No 121
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=308.81 Aligned_cols=199 Identities=25% Similarity=0.322 Sum_probs=159.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GYITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~---g~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ ...+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 589999999872 35699999999999999999999999999999999997542 12479999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----chhhhccC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT----LRKALVGL 373 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~----~~~~~vg~ 373 (829)
.++.. ...++.++|++|++.+++ +|++||+.+....+ ..+.++..+.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87632 124567999999988877 89999999875432 1233334456788999998843 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cC
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RG 438 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~ 438 (829)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++.| ++
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~ 228 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLM 228 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 358999999999999999999999999999999999999999999999865 788855433 35
Q ss_pred cEEEEEcCC
Q 044554 439 GQEIYVGPL 447 (829)
Q Consensus 439 G~~vy~G~~ 447 (829)
|++++.|++
T Consensus 229 G~i~~~~~~ 237 (258)
T PRK14268 229 GELIEFGQT 237 (258)
T ss_pred CEEEEeCCH
Confidence 677666654
No 122
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=311.62 Aligned_cols=192 Identities=23% Similarity=0.321 Sum_probs=159.4
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|+++.+. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~l~~~nl~~~~~-----------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~ 72 (271)
T PRK13632 6 VMIKVENVSFSYP-----------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGIT 72 (271)
T ss_pred eEEEEEeEEEEcC-----------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEe
Confidence 3589999999873 1235699999999999999999999999999999999997654 37999999998
Q ss_pred cCc---cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 305 KKQ---ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
+.. ..+++.++|++|++. .++.+||+||+.+..... ..+.++..+.++++++.+++.+..++.+ +.||
T Consensus 73 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 144 (271)
T PRK13632 73 ISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLS 144 (271)
T ss_pred cCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCC
Confidence 643 234567999999973 567799999998865322 2233444566889999999988777754 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ ++||+++.|+
T Consensus 145 ~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 202 (271)
T PRK13632 145 GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec
Confidence 99999999999999999999999999999999999999999999876 4888665543
No 123
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=308.25 Aligned_cols=200 Identities=23% Similarity=0.264 Sum_probs=158.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g---~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 589999999882 246999999999999999999999999999999999975431 2369999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc----cchhhhccC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN----TLRKALVGL 373 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~----~~~~~~vg~ 373 (829)
.++.. ...++.++|++|++.+++ +||+||+.+....+. ..+.++..+.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 134567999999987774 999999998754321 112333345678888888873 233432
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cC
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RG 438 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~ 438 (829)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ +.|||++.| ++
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~ 224 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRISDRTAFFLN 224 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999964 788855443 35
Q ss_pred cEEEEEcCC
Q 044554 439 GQEIYVGPL 447 (829)
Q Consensus 439 G~~vy~G~~ 447 (829)
|+++..|+.
T Consensus 225 G~i~~~g~~ 233 (254)
T PRK14273 225 GCIEEESST 233 (254)
T ss_pred CEEEEeCCH
Confidence 666666654
No 124
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-34 Score=338.13 Aligned_cols=206 Identities=21% Similarity=0.324 Sum_probs=170.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|++++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|..+++..+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTF-------------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEe-------------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 48999999988 23579999999999999999999999999999999999765432479999999886
Q ss_pred Cccc----cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQET----FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~~~----~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.... .++.++|++|++.+++.+||+||+.+....+.....+.++..+.++++++.+++.+..++.+ +.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 4321 24569999999988899999999998754321111233344456889999999988777765 47999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~ 446 (829)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++.| ++|++++.|+
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 9999999999999999999999999999999999999999999878888844322 4699999998
Q ss_pred CCC
Q 044554 447 LGE 449 (829)
Q Consensus 447 ~~~ 449 (829)
..+
T Consensus 227 ~~~ 229 (506)
T PRK13549 227 AAG 229 (506)
T ss_pred ccc
Confidence 765
No 125
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.8e-35 Score=300.38 Aligned_cols=185 Identities=29% Similarity=0.376 Sum_probs=157.0
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 66 (207)
T PRK13539 2 MLEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDI 66 (207)
T ss_pred EEEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeC
Confidence 378999999872 35799999999999999999999999999999999997654 369999999875
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
.....++.++|++|++.+++.+||+||+.+....+. .. .+.++++++.+|+.+..+... +.|||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (207)
T PRK13539 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKR 134 (207)
T ss_pred cchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHH
Confidence 322256678999999888889999999987653321 11 134788999999987666544 479999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|++||++|+.+|++++|||||+|||+.+...+.+.|++++++|+|++++.|+
T Consensus 135 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 186 (207)
T PRK13539 135 RVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999988889999998875
No 126
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=309.06 Aligned_cols=198 Identities=25% Similarity=0.365 Sum_probs=161.8
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcc
Confidence 78999999872 35799999999999999999999999999999999997654 3699999998764
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
. ...++.++|++|++.+++.+||+||+.+..... ....++..+.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 123456899999988878899999998864321 1122233456789999999987777654 5899999
Q ss_pred HHHHHHHHHhh------hCCCcceecCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEEe---------------cCcEE
Q 044554 384 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIFMRTVRNTV-DTGRTVLFLLK---------------RGGQE 441 (829)
Q Consensus 384 rqRlsIa~aL~------~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~-~~g~tvllll~---------------~~G~~ 441 (829)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+||+++.| ++|++
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 219 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRL 219 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEE
Confidence 99999999999 5999999999999999999999999999998 66888855433 35777
Q ss_pred EEEcCC
Q 044554 442 IYVGPL 447 (829)
Q Consensus 442 vy~G~~ 447 (829)
+..|+.
T Consensus 220 ~~~~~~ 225 (258)
T PRK13548 220 VADGTP 225 (258)
T ss_pred EeeCCH
Confidence 776664
No 127
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-34 Score=303.47 Aligned_cols=196 Identities=26% Similarity=0.347 Sum_probs=157.7
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 46889999872 35799999999999999999999999999999999997654 3799999998764
Q ss_pred cc----ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-CccchhhhccCCCCCCCCH
Q 044554 307 QE----TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVE-LNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 307 ~~----~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~-L~~~~~~~vg~~~~~~LSg 381 (829)
.. ..++.++|++|++.+++.+|++||+.+....+. .. ..+..+++++.++ +.+..++.+ +.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCH
Confidence 31 124568999999999999999999988754321 11 1233567777776 455555543 57999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEc
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVG 445 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G 445 (829)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|++++.| ++|+++..|
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~ 214 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASG 214 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999875 888855433 357777777
Q ss_pred CCC
Q 044554 446 PLG 448 (829)
Q Consensus 446 ~~~ 448 (829)
+.+
T Consensus 215 ~~~ 217 (230)
T TIGR03410 215 AGD 217 (230)
T ss_pred CHH
Confidence 653
No 128
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=307.58 Aligned_cols=195 Identities=22% Similarity=0.233 Sum_probs=154.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g---~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 488999999882 246999999999999999999999999999999999976542 2479999999
Q ss_pred eecC--c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKK--Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~--~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++. . ..+++.++|++|++.+++.+||.||+.+....+.. ..+.++..+.++++++.+++......... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 148 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLN-DYPS 148 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhc-cChh
Confidence 8764 1 13456799999999999999999999987543210 11233344567888999988532111111 1245
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++.|
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH 206 (253)
T PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTH 206 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999875 688865544
No 129
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-34 Score=312.91 Aligned_cols=204 Identities=23% Similarity=0.287 Sum_probs=163.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|... ...++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~--------~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPG--------TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCC--------CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 47899999988310 00124699999999999999999999999999999999997654 379999999876
Q ss_pred Cc-------cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCC
Q 044554 306 KQ-------ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGL 376 (829)
Q Consensus 306 ~~-------~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~ 376 (829)
.. ...++.++|++|++. .+..+||+||+.+....+ ..+.++..++++++++.++|. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 123457899999862 333589999998865432 233445556789999999997 5666654
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEE
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQE 441 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~ 441 (829)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.||+++.| ++|++
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i 223 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 589999999999999999999999999999999999999999999999877899854333 35777
Q ss_pred EEEcCC
Q 044554 442 IYVGPL 447 (829)
Q Consensus 442 vy~G~~ 447 (829)
+..|++
T Consensus 224 ~~~g~~ 229 (287)
T PRK13641 224 IKHASP 229 (287)
T ss_pred EEeCCH
Confidence 777764
No 130
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=9.9e-35 Score=298.65 Aligned_cols=182 Identities=25% Similarity=0.361 Sum_probs=155.9
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (201)
T cd03231 1 LEADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLD 65 (201)
T ss_pred CEEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 46789998872 35799999999999999999999999999999999997654 3699999998753
Q ss_pred c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
. ..+++.++|++|++.+++.+||+||+.+.... . ..+.++++++.+++.+..++.+ +.||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 131 (201)
T cd03231 66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQ 131 (201)
T ss_pred cccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHH
Confidence 2 23456799999999888899999999875311 1 1245788999999987776654 57999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|++++.|+
T Consensus 132 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~ 184 (201)
T cd03231 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ 184 (201)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 99999999999999999999999999999999999999988889999998875
No 131
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.8e-35 Score=350.58 Aligned_cols=201 Identities=28% Similarity=0.447 Sum_probs=162.0
Q ss_pred CCCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEc
Q 044554 222 FEPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAIS 301 (829)
Q Consensus 222 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~ 301 (829)
.....++++||+|+|.. ++..+|+|+|++|+|||.+||+|+||||||||+|+|+|..++ ..|+|.+|
T Consensus 467 ~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~d 533 (709)
T COG2274 467 KLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILLD 533 (709)
T ss_pred ccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEEC
Confidence 34567999999999952 334799999999999999999999999999999999998775 37999999
Q ss_pred CeecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc-------CCccchhhhc
Q 044554 302 GYPKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELV-------ELNTLRKALV 371 (829)
Q Consensus 302 G~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-------~L~~~~~~~v 371 (829)
|.+..+ ..+|+.+|||+||+.++ +.|++||+.++. | +.+.++ +.+.++.. ++..-.|+.+
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~----p-~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~v 603 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGN----P-EATDEE----IIEAAQLAGAHEFIENLPMGYDTPV 603 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCC----C-CCCHHH----HHHHHHHhCcHHHHHhccccccccc
Confidence 998754 45789999999998766 579999999863 2 233222 22222222 2334456777
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------c
Q 044554 372 GLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------R 437 (829)
Q Consensus 372 g~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~ 437 (829)
|+.+ .+||||||||++|||+|+++|+||+||||||+||+.+++.|.+.|+++.. |+|++++.| +
T Consensus 604 ~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~ti~~adrIiVl~ 681 (709)
T COG2274 604 GEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLSTIRSADRIIVLD 681 (709)
T ss_pred ccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchHhhhccEEEEcc
Confidence 7654 58999999999999999999999999999999999999999999999864 688865544 3
Q ss_pred CcEEEEEcCC
Q 044554 438 GGQEIYVGPL 447 (829)
Q Consensus 438 ~G~~vy~G~~ 447 (829)
+||++.+|+.
T Consensus 682 ~Gkiv~~gs~ 691 (709)
T COG2274 682 QGKIVEQGSH 691 (709)
T ss_pred CCceeccCCH
Confidence 6888888875
No 132
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-34 Score=310.74 Aligned_cols=198 Identities=24% Similarity=0.335 Sum_probs=160.6
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 67899999872 24699999999999999999999999999999999997654 3799999998863
Q ss_pred c-----cccccceeEEecCCCC-CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 Q-----ETFTCISGYCEQNDIH-SPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~-----~~~~~~~~yv~Q~~~~-~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
. ...++.++|++|++.. +...|+.||+.+....+ ..+.++..+.++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1234679999998753 34568999998864332 2233344456788999999988777654 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEc
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVG 445 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G 445 (829)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.||+++.| ++|+++..|
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999999877888865443 346666666
Q ss_pred CC
Q 044554 446 PL 447 (829)
Q Consensus 446 ~~ 447 (829)
+.
T Consensus 219 ~~ 220 (271)
T PRK13638 219 AP 220 (271)
T ss_pred CH
Confidence 54
No 133
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-34 Score=308.28 Aligned_cols=203 Identities=25% Similarity=0.350 Sum_probs=163.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++++. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (255)
T PRK11231 2 TLRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPI 66 (255)
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEh
Confidence 378999999872 35799999999999999999999999999999999997554 369999999875
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.. ...++.++|++|+..+++.+|+.||+.++...... .....++..+.++++++.+++.+..++.. +.|||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 141 (255)
T PRK11231 67 SMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSG 141 (255)
T ss_pred HHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCH
Confidence 32 23345689999998888889999999886321000 01111233456788999999987777654 58999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~ 446 (829)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.| ++|+++..|+
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcC
Confidence 9999999999999999999999999999999999999999999877889855433 3577777766
Q ss_pred CC
Q 044554 447 LG 448 (829)
Q Consensus 447 ~~ 448 (829)
.+
T Consensus 222 ~~ 223 (255)
T PRK11231 222 PE 223 (255)
T ss_pred HH
Confidence 53
No 134
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-34 Score=311.52 Aligned_cols=203 Identities=22% Similarity=0.324 Sum_probs=160.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+... ....+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~--------~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAG--------TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCC--------CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 47899999988310 00124699999999999999999999999999999999997654 379999999876
Q ss_pred Cc-------cccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCC
Q 044554 306 KQ-------ETFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPG 375 (829)
Q Consensus 306 ~~-------~~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~ 375 (829)
.. ...++.++|++|++ .++ ..||+||+.+..... ..+.++..+.++++++.++|. ...+..+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 143 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP---- 143 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc----
Confidence 42 12456799999986 344 479999998865332 123334445678899999996 3455543
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcE
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQ 440 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~ 440 (829)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.| ++|+
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 222 (280)
T PRK13649 144 -FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGK 222 (280)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCE
Confidence 589999999999999999999999999999999999999999999999877889865443 3567
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
++..|++
T Consensus 223 i~~~g~~ 229 (280)
T PRK13649 223 LVLSGKP 229 (280)
T ss_pred EEEeCCH
Confidence 7666654
No 135
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-34 Score=298.05 Aligned_cols=186 Identities=26% Similarity=0.341 Sum_probs=153.8
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
+.++|+++.+. ++. .|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~ 63 (211)
T cd03298 1 VRLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVT 63 (211)
T ss_pred CEEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcC
Confidence 46889999872 122 299999999999999999999999999999997654 3799999998764
Q ss_pred cc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 QE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
.. ..++.++|++|++.+++.+||+||+.+....+. ... ++.++.++++++.+++.+..++.+ ..|||||||
T Consensus 64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (211)
T cd03298 64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KLT-AEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQ 135 (211)
T ss_pred cCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Ccc-HHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 32 234679999999998889999999987643211 111 233456889999999988777654 589999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|++|||+|+.+|++++|||||+|||..++..+.+.|++++++ |+||+++.|+
T Consensus 136 rv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 188 (211)
T cd03298 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 999999999999999999999999999999999999999764 8999888764
No 136
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2e-34 Score=304.62 Aligned_cols=194 Identities=23% Similarity=0.301 Sum_probs=155.4
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|.......+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 46889999872 35799999999999999999999999999999999997310124799999998764
Q ss_pred cc---c-cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCC----CCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCC
Q 044554 307 QE---T-FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPP----EVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLN 377 (829)
Q Consensus 307 ~~---~-~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~----~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~ 377 (829)
.. . .+..++|++|++.+++.+|++|++.+........ ..+.++..+.++++++.+++. +..++.++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 1 1234899999999999999999998765322110 112233345688999999997 45555432 2
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+||+++.|+
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~ 203 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY 203 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEec
Confidence 599999999999999999999999999999999999999999999998788999887764
No 137
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-34 Score=304.99 Aligned_cols=194 Identities=23% Similarity=0.299 Sum_probs=153.2
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeeEEEEEEc
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--S-GYITGNIAIS 301 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~-g~~~G~i~i~ 301 (829)
..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|... + ...+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 4599999999882 2469999999999999999999999999999999999632 1 1247999999
Q ss_pred CeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCC
Q 044554 302 GYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGL 376 (829)
Q Consensus 302 G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~ 376 (829)
|.++.. ...++.++|++|++.+++ .||+||+.+....+. ..+.++..+.++++++.+++.+..+..... .+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHE-SA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-Cc
Confidence 987642 123567999999988877 599999998754321 112233345678889999985422222211 24
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++||+++.|
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH 206 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTH 206 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEe
Confidence 68999999999999999999999999999999999999999999999954 788866554
No 138
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.5e-34 Score=308.19 Aligned_cols=197 Identities=25% Similarity=0.334 Sum_probs=156.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||++.+......+ ..+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 78999999984210000 01246799999999999999999999999999999999997654 3799999998764
Q ss_pred cc------ccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCC
Q 044554 307 QE------TFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLN 377 (829)
Q Consensus 307 ~~------~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~ 377 (829)
.. ..++.++|++|++ .+.+.+||+||+.+..... .....++..+.++++++.+++. +..+..+ +
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 31 1345799999996 4667899999998754311 1122333445688999999996 5666543 5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.|
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 209 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH 209 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 89999999999999999999999999999999999999999999999875 889866554
No 139
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-34 Score=304.45 Aligned_cols=204 Identities=22% Similarity=0.291 Sum_probs=158.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC---CCCCeeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR---KTSGYITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~---~~~g~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|. .++...+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 588999999872 35799999999999999999999999999999999995 22211369999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+...+.++++++.+++.+..+..... .++
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 88642 133567999999988776 6999999887543311 12223345678899999986432111111 245
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEI 442 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~v 442 (829)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +++|||++.| ++|+++
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~ 224 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMV 224 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999999985 4788854433 357777
Q ss_pred EEcCC
Q 044554 443 YVGPL 447 (829)
Q Consensus 443 y~G~~ 447 (829)
+.|++
T Consensus 225 ~~~~~ 229 (250)
T PRK14245 225 EYDDT 229 (250)
T ss_pred EECCH
Confidence 77764
No 140
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-34 Score=309.11 Aligned_cols=203 Identities=28% Similarity=0.398 Sum_probs=163.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEeh
Confidence 589999999872 35799999999999999999999999999999999997654 369999999875
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPP-EVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.. ..+++.++|++|+..+++.+||.||+.+........ ...+....+.++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 234567999999988888999999998763211100 0111223456789999999987767654 47999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEc
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVG 445 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G 445 (829)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.||+++.| ++|+++..|
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~ 230 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQG 230 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 9999999999999999999999999999999999999999999765 888855433 357777766
Q ss_pred CCC
Q 044554 446 PLG 448 (829)
Q Consensus 446 ~~~ 448 (829)
+.+
T Consensus 231 ~~~ 233 (265)
T PRK10575 231 TPA 233 (265)
T ss_pred CHH
Confidence 653
No 141
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-34 Score=324.02 Aligned_cols=189 Identities=23% Similarity=0.310 Sum_probs=159.0
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc---c----cccceeEEecCCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE---T----FTCISGYCEQNDI 322 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~---~----~~~~~~yv~Q~~~ 322 (829)
+...+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++... . .++.++|++|+..
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 445699999999999999999999999999999999997654 369999999986431 1 1356999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCccee
Q 044554 323 HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFM 402 (829)
Q Consensus 323 ~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~L 402 (829)
+++.+||+||+.+....+ ..+.++..++++++++.++|.+..++.. +.||||||||++|||+|+.+|++|+|
T Consensus 117 l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 2234445567889999999988777654 58999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEe---------------cCcEEEEEcCCC
Q 044554 403 DEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLK---------------RGGQEIYVGPLG 448 (829)
Q Consensus 403 DEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~---------------~~G~~vy~G~~~ 448 (829)
||||+|||+.++..+.+.|+++.+ .|+||+++.| ++|+++..|+++
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~ 250 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPD 250 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999975 4889854333 468888888764
No 142
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-34 Score=296.33 Aligned_cols=172 Identities=28% Similarity=0.517 Sum_probs=143.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEEcCee
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-YITGNIAISGYP 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g-~~~G~i~i~G~~ 304 (829)
.++|+|++|.|+.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999999532 13567999999999999999999999999999999999976522 347999999987
Q ss_pred cCc--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 305 KKQ--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 305 ~~~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
... ...++.++|++|++.+++.+||+||+.+.+..+ .+. .+..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHH
Confidence 643 234567999999999999999999998754211 122 23579999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++ +.|++++.|+
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h 178 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQ 178 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 999999999999999999999999999999999999999999875 6677666543
No 143
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-34 Score=296.31 Aligned_cols=183 Identities=22% Similarity=0.318 Sum_probs=156.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccc
Confidence 67899999872 35799999999999999999999999999999999997654 3799999998764
Q ss_pred c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
. ..+++.++|++|+..+++.+||+||+.+.... . .. ...++++++.+++.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 3 23456799999998888899999999886421 1 11 135788999999987666654 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|++++.|+
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 186 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 99999999999999999999999999999999999999988789999998864
No 144
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-34 Score=306.87 Aligned_cols=192 Identities=20% Similarity=0.290 Sum_probs=154.2
Q ss_pred CCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeeEEEEE
Q 044554 223 EPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--S-GYITGNIA 299 (829)
Q Consensus 223 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~-g~~~G~i~ 299 (829)
....++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|... + ...+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 345699999999882 2469999999999999999999999999999999999753 1 12479999
Q ss_pred EcCeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----chhhh
Q 044554 300 ISGYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT----LRKAL 370 (829)
Q Consensus 300 i~G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~----~~~~~ 370 (829)
++|.++.. ...++.++|++|+..+++ .||+||+.+....+. ..+.++..++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987632 134567999999988777 899999988654221 1233444456889999999843 23332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 371 VGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 371 vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+..||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++++ +.|||++.|
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH 213 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTH 213 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeC
Confidence 358999999999999999999999999999999999999999999999964 678865443
No 145
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-34 Score=309.22 Aligned_cols=199 Identities=28% Similarity=0.357 Sum_probs=162.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 67899999882 224699999999999999999999999999999999997654 3699999998863
Q ss_pred c-----cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 Q-----ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~-----~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
. ...++.++|++|++. .+...||.||+.+..... ..+.++..+.+.++++.++|.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 2 123567999999963 334579999998764321 2234445567889999999988887764 4799
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEc
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVG 445 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G 445 (829)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.||+++.| ++|+++..|
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g 219 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999999877899855443 357777776
Q ss_pred CC
Q 044554 446 PL 447 (829)
Q Consensus 446 ~~ 447 (829)
++
T Consensus 220 ~~ 221 (275)
T PRK13639 220 TP 221 (275)
T ss_pred CH
Confidence 64
No 146
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-34 Score=309.94 Aligned_cols=200 Identities=25% Similarity=0.369 Sum_probs=164.3
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. +++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 78999999883 124599999999999999999999999999999999997654 3799999998764
Q ss_pred c---cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 307 Q---ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
. ...++.++|++|++. .+...||.||+.+..... ..+.++..+.++++++.++|.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999963 344689999998765322 2344445567889999999988777654 589999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcC
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGP 446 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~ 446 (829)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.+++++++ |.||+++.| ++|++++.|+
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~ 221 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECC
Confidence 999999999999999999999999999999999999999999875 888854332 4688888887
Q ss_pred CC
Q 044554 447 LG 448 (829)
Q Consensus 447 ~~ 448 (829)
++
T Consensus 222 ~~ 223 (277)
T PRK13652 222 VE 223 (277)
T ss_pred HH
Confidence 53
No 147
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.8e-34 Score=315.38 Aligned_cols=211 Identities=19% Similarity=0.279 Sum_probs=169.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEEcCee
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-YITGNIAISGYP 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g-~~~G~i~i~G~~ 304 (829)
.++++|+++.+... .+...+|+|||+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 58999999998421 13467999999999999999999999999999999999976542 237999999998
Q ss_pred cCcc---c---cc-cceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCC
Q 044554 305 KKQE---T---FT-CISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 305 ~~~~---~---~~-~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
+... . ++ +.++||+|++ .+.|.+|+.+++........ ..+.++..++++++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 6431 1 12 4699999997 67889999999987654332 234555566788999999997644332 2 23
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCc
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGG 439 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G 439 (829)
+++||||||||++|||||+.+|++|++||||+|||..++.++++.|+++.++ |.|+|++.| ++|
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G 238 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAG 238 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 5789999999999999999999999999999999999999999999999875 888854332 479
Q ss_pred EEEEEcCCCC
Q 044554 440 QEIYVGPLGE 449 (829)
Q Consensus 440 ~~vy~G~~~~ 449 (829)
+++..|+.++
T Consensus 239 ~ive~g~~~~ 248 (330)
T PRK09473 239 RTMEYGNARD 248 (330)
T ss_pred EEEEECCHHH
Confidence 9999998643
No 148
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-34 Score=306.16 Aligned_cols=190 Identities=20% Similarity=0.272 Sum_probs=154.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g---~~~G~i~i~G 302 (829)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 488999999882 357999999999999999999999999999999999975421 1479999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----chhhhccC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT----LRKALVGL 373 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~----~~~~~vg~ 373 (829)
.++.. ...++.++|++|+..+++.+||+||+.+....+. ..+.++..+.++++++.+++.. ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87631 2345679999999989999999999988754321 1123344456788999998842 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++.|
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH 205 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTH 205 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEec
Confidence 458999999999999999999999999999999999999999999999964 688865544
No 149
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=308.64 Aligned_cols=204 Identities=22% Similarity=0.301 Sum_probs=164.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEE
Confidence 4689999999982 35799999999999999999999999999999999997654 36999999987
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPP-EVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
+.. ...++.++|++|++.+++..||+||+.+......+. ....+...+.++++++.+++.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCC
Confidence 642 223457899999998888999999998753111000 0011233456789999999987766654 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEE
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYV 444 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~ 444 (829)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++.| ++|+++..
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ 225 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999874 888854433 36788887
Q ss_pred cCCC
Q 044554 445 GPLG 448 (829)
Q Consensus 445 G~~~ 448 (829)
|+.+
T Consensus 226 g~~~ 229 (265)
T PRK10253 226 GAPK 229 (265)
T ss_pred CCHH
Confidence 7754
No 150
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-34 Score=312.77 Aligned_cols=210 Identities=17% Similarity=0.229 Sum_probs=166.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-CC-eeEEEEEEcCe
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT-SG-YITGNIAISGY 303 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~-~g-~~~G~i~i~G~ 303 (829)
.++++||++.|... .+...+|+|||+++++||++||+|+||||||||+++|+|..+ ++ ..+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 37899999998421 123579999999999999999999999999999999999754 23 24799999999
Q ss_pred ecCcc---c----cccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCC
Q 044554 304 PKKQE---T----FTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLP 374 (829)
Q Consensus 304 ~~~~~---~----~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~ 374 (829)
++... . .++.++||+|++ .+.|.+||.+++........ ..+.++.+++++++++.+||.+..+..- .
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~--~ 149 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLD--V 149 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHh--C
Confidence 86431 1 123699999997 47889999998876543321 2344555677899999999975332211 1
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEe---------------cC
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLK---------------RG 438 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~---------------~~ 438 (829)
.+++||||||||++|||||+.+|++|++||||+|||..++.++++.|+++++ .|.|+|++.| ++
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~ 229 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA 229 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 3468999999999999999999999999999999999999999999999986 4888854332 46
Q ss_pred cEEEEEcCCC
Q 044554 439 GQEIYVGPLG 448 (829)
Q Consensus 439 G~~vy~G~~~ 448 (829)
|+++..|+.+
T Consensus 230 G~ive~g~~~ 239 (326)
T PRK11022 230 GQVVETGKAH 239 (326)
T ss_pred CEEEEECCHH
Confidence 9999999864
No 151
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-34 Score=301.69 Aligned_cols=205 Identities=21% Similarity=0.299 Sum_probs=161.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g-~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 489999999882 3569999999999999999999999999999999999753 21 2369999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ...++.++|++|+..+++.+|++||+.+....+. ..+.++..+.++++++.+++....+.... ..++
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87642 1346679999999999999999999987644321 12223334567889999998642211111 1246
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEI 442 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~v 442 (829)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++||+++.| ++|+++
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLV 226 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 8999999999999999999999999999999999999999999999976 578754433 357777
Q ss_pred EEcCC
Q 044554 443 YVGPL 447 (829)
Q Consensus 443 y~G~~ 447 (829)
..|+.
T Consensus 227 ~~~~~ 231 (252)
T PRK14256 227 ECGET 231 (252)
T ss_pred EeCCH
Confidence 77765
No 152
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=310.54 Aligned_cols=203 Identities=22% Similarity=0.285 Sum_probs=165.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCe-eEEEEEEcCee
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGY-ITGNIAISGYP 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~-~~G~i~i~G~~ 304 (829)
.++++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4899999998831 22469999999999999999999999999999999999754421 24899999998
Q ss_pred cCcc---ccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 305 KKQE---TFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 305 ~~~~---~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.... ..++.+||++|++. .++..||.||+.+....+ ..+.++..++++++++.++|.+..++.. +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 7532 23567999999974 567899999998764322 2344555567899999999988777654 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe--------------cCcEEEEEc
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK--------------RGGQEIYVG 445 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~--------------~~G~~vy~G 445 (829)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.| ++|+++..|
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999999865 888865443 357777777
Q ss_pred CC
Q 044554 446 PL 447 (829)
Q Consensus 446 ~~ 447 (829)
++
T Consensus 226 ~~ 227 (282)
T PRK13640 226 SP 227 (282)
T ss_pred CH
Confidence 64
No 153
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.8e-35 Score=342.08 Aligned_cols=187 Identities=26% Similarity=0.417 Sum_probs=156.4
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+|+|+ +++.+|+|+|+++++||.+||+||||||||||+|+|+|..++. +|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~------------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYP------------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL--QGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecC------------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEE
Confidence 4699999999984 1235999999999999999999999999999999999987653 7999999988
Q ss_pred cCc--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCCC
Q 044554 305 KKQ--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLPG 375 (829)
Q Consensus 305 ~~~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~ 375 (829)
+.+ ..+++.++||+|++.+++ .|++||+.++. | +.+++ .++++++..++++ -.|+.+|+.+
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~----~-~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR----P-DATDE----ELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCccccc-ccHHHHHhccC----C-CCCHH----HHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 653 456678999999998775 69999999862 1 22332 3566777766654 3477788654
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
..||||||||++|||||+++|+||+||||||+||+.++..|.+.++++. +++|++++.||
T Consensus 469 -~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHr 528 (529)
T TIGR02868 469 -ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHH 528 (529)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 4799999999999999999999999999999999999999999999864 57999999885
No 154
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.1e-34 Score=305.85 Aligned_cols=202 Identities=27% Similarity=0.406 Sum_probs=162.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 67899999872 35799999999999999999999999999999999997654 3699999998764
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
. ...++.++|++|++.+++.+||+||+.+....... .....++..+.++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 12345689999998778889999999875321100 00111223356789999999987777654 479999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcCC
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~~ 447 (829)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.||+++.| ++|+++..|+.
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPP 221 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCH
Confidence 999999999999999999999999999999999999999999877888854433 35777777765
Q ss_pred C
Q 044554 448 G 448 (829)
Q Consensus 448 ~ 448 (829)
+
T Consensus 222 ~ 222 (256)
T TIGR03873 222 R 222 (256)
T ss_pred H
Confidence 3
No 155
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6e-34 Score=300.26 Aligned_cols=198 Identities=27% Similarity=0.402 Sum_probs=163.3
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.++.
T Consensus 1 i~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 46889999872 35799999999999999999999999999999999997654 3699999998865
Q ss_pred cc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 QE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
.. ..++.++|++|++.+++..|++||+.+....+ ..+.....+.++++++.+++.+..++.. +.||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQ 137 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 32 23467999999998888999999998875433 1223334456789999999987777654 479999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCC
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~ 447 (829)
|++|||+|+.+|++++|||||+|||..++..+.+.|++++++ |+||+++.| ++|+++..|+.
T Consensus 138 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 215 (237)
T TIGR00968 138 RVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSP 215 (237)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999998876 888865443 35677666664
No 156
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-34 Score=313.47 Aligned_cols=212 Identities=22% Similarity=0.254 Sum_probs=169.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.|....... ...+.+.+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 589999999985311000 001235799999999999999999999999999999999997654 379999999886
Q ss_pred Ccc------ccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCC
Q 044554 306 KQE------TFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGL 376 (829)
Q Consensus 306 ~~~------~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~ 376 (829)
... .+++.++||+|++ .+.|.+||.+++....... ....+++.+++++++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 431 2456799999997 5788999999998765432 12344556677899999999963 44543 4
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcE
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQ 440 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~ 440 (829)
+.||||||||++|||||+.+|++|++||||+|||..++.+++++|+++.++ |.|+|++.| ++|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGR 232 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 689999999999999999999999999999999999999999999999875 888854332 4699
Q ss_pred EEEEcCCCC
Q 044554 441 EIYVGPLGE 449 (829)
Q Consensus 441 ~vy~G~~~~ 449 (829)
++..|+.++
T Consensus 233 ive~g~~~~ 241 (327)
T PRK11308 233 CVEKGTKEQ 241 (327)
T ss_pred EEEECCHHH
Confidence 999998643
No 157
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-34 Score=306.42 Aligned_cols=201 Identities=23% Similarity=0.278 Sum_probs=164.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 5899999998831 124599999999999999999999999999999999997654 379999999876
Q ss_pred Cc---cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQ---ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.. ...++.++|++|++. +++..|+++|+.+..... ..+.++..+.++++++.+++.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567999999974 677889999998865322 1233444456889999999988777653 58999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe--------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK--------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~--------------~~G~~vy~G~ 446 (829)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+||+++.| ++|+++..|+
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~ 225 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGT 225 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999999765 888865443 3567766666
Q ss_pred C
Q 044554 447 L 447 (829)
Q Consensus 447 ~ 447 (829)
.
T Consensus 226 ~ 226 (269)
T PRK13648 226 P 226 (269)
T ss_pred H
Confidence 4
No 158
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-34 Score=309.52 Aligned_cols=205 Identities=19% Similarity=0.300 Sum_probs=165.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|++++|+... ....+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEec
Confidence 489999999984210 01235699999999999999999999999999999999997654 379999999886
Q ss_pred Cc----cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 306 KQ----ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 306 ~~----~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.. ...++.++|++|++. .+...||.||+.|..... ..++.+..+.++++++.+||.+..++.+ +.||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 224567999999974 233569999999875422 2334445567899999999988877764 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe--------------cCcEEEEEc
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK--------------RGGQEIYVG 445 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~--------------~~G~~vy~G 445 (829)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.||+++.| ++|+++..|
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g 226 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEG 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999764 889855433 357777777
Q ss_pred CC
Q 044554 446 PL 447 (829)
Q Consensus 446 ~~ 447 (829)
++
T Consensus 227 ~~ 228 (280)
T PRK13633 227 TP 228 (280)
T ss_pred CH
Confidence 65
No 159
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.3e-34 Score=296.76 Aligned_cols=186 Identities=23% Similarity=0.298 Sum_probs=158.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+++++|+++++||+++|+|+||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 589999999872 34699999999999999999999999999999999997654 369999999886
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
.....++.++|++|++.+++.+|++||+.+....+. .. ..+.++++++.+++.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344568999999888888999999988654321 11 1234678899999987777654 479999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|++|||+++.+|++++|||||+|||+.++..+.+.|++++++|+|++++.|+
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 9999999999999999999999999999999999999998889999998875
No 160
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=292.89 Aligned_cols=198 Identities=24% Similarity=0.412 Sum_probs=178.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.+++++|+.++ +++.+++|+|++++||++.+++|+|||||||.+++|.|...+ .+|+|.++|.+.
T Consensus 2 ~L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~ 66 (300)
T COG4152 2 ALEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPL 66 (300)
T ss_pred ceEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcch
Confidence 47888888776 678999999999999999999999999999999999998765 379999999998
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
+.. .+.+|||.|.+..+++.+||.|.|.|.|+|+ .+++++.++.++..++.+++.......| +.||.|.+|
T Consensus 67 ~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQ 137 (300)
T COG4152 67 SQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQ 137 (300)
T ss_pred hhh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhH
Confidence 753 4567999999999999999999999999987 5677788888999999999998887765 589999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEE----------------EEEecCcEEEEEcCCC
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVL----------------FLLKRGGQEIYVGPLG 448 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvl----------------lll~~~G~~vy~G~~~ 448 (829)
++.+-.+++++|++++||||+|||||.+.+.+-+.+.+++++|.||+ ++| ++|+.|.+|+..
T Consensus 138 KIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL-~kG~~V~~G~v~ 215 (300)
T COG4152 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML-KKGQTVLYGTVE 215 (300)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhee-cCCceEEeccHH
Confidence 99999999999999999999999999999999999999999999994 444 679999999973
No 161
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-34 Score=298.33 Aligned_cols=188 Identities=27% Similarity=0.408 Sum_probs=158.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
+.++|+++++. .+.+++|+|++++|||+++|+|+||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 46889999872 35799999999999999999999999999999999997654 3699999998764
Q ss_pred cc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 QE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
.. ..++.++|++|++..++.+|++||+.+....+. .+.+...+.++++++.+++.+..++.. +.||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~q 137 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQ 137 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 32 234678999999998888999999988754331 223334456789999999988777654 589999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+||+++.|+
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~ 190 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD 190 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999999999999999999999999999999999999999875 8999776653
No 162
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=5.6e-34 Score=300.36 Aligned_cols=178 Identities=29% Similarity=0.396 Sum_probs=149.3
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc--cccccceeEEe-cCCCCCCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ--ETFTCISGYCE-QNDIHSPN 326 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~--~~~~~~~~yv~-Q~~~~~~~ 326 (829)
+.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 457899999999999999999999999999999999997654 37999999986532 23456789997 55667788
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCC
Q 044554 327 VTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPT 406 (829)
Q Consensus 327 lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPT 406 (829)
+||+|++.+....+ ....++..+.++++++.+++.+..++.+ +.||||||||++||++|+.+|++++|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865433 1233344456788999999988777764 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 407 SGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 407 sGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
+|||+.++..+.+.|++++++ |+||+++.|+
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 213 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 999999999999999999765 7898887764
No 163
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-34 Score=304.14 Aligned_cols=196 Identities=22% Similarity=0.286 Sum_probs=155.7
Q ss_pred CCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEE
Q 044554 223 EPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GYITGNIA 299 (829)
Q Consensus 223 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~---g~~~G~i~ 299 (829)
.+..++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ ...+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 345699999999882 35799999999999999999999999999999999997542 12479999
Q ss_pred EcCeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCC
Q 044554 300 ISGYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLP 374 (829)
Q Consensus 300 i~G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~ 374 (829)
++|.+... ...++.++|++|++.+++ .||+||+.++.... ...++++..+.++++++.+++.+..+...+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~- 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHK- 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcC-
Confidence 99988642 123567999999988777 69999998865322 1123334446678899999986432222222
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ ++.||+++.|
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH 220 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTH 220 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEec
Confidence 346899999999999999999999999999999999999999999999986 4788865544
No 164
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-34 Score=304.03 Aligned_cols=194 Identities=23% Similarity=0.293 Sum_probs=153.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GYITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~---g~~~G~i~i~G 302 (829)
.++++||++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ...+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 699999999982 35799999999999999999999999999999999996542 12479999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ..+++.++|++|++.+++. ||+||+.+....+.. ..+.++..+.++++++.+++.+....... ..++
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 88642 1245678999999887774 999999987543311 11223334567889999999642111111 1235
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++||+++.|
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH 220 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTH 220 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 8999999999999999999999999999999999999999999999875 678865544
No 165
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=7.3e-34 Score=294.75 Aligned_cols=186 Identities=23% Similarity=0.318 Sum_probs=153.8
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. .+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 ~~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 63 (213)
T TIGR01277 1 LALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHT 63 (213)
T ss_pred CeEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 36889998872 135799999999999999999999999999999997654 3799999998764
Q ss_pred c-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 Q-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
. ...++.++|++|++.+++.+|++||+.+...... . ...+..+.++++++.+++.+..++.+ +.|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 135 (213)
T TIGR01277 64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQ 135 (213)
T ss_pred cCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHH
Confidence 3 2345679999999999999999999987543211 1 11122455788999999987777654 589999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|++|||+|+.+|++++|||||+|||..++..+.+.|+++.++ |+||+++.|+
T Consensus 136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~ 188 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 999999999999999999999999999999999999999765 8898777654
No 166
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-34 Score=299.19 Aligned_cols=196 Identities=23% Similarity=0.326 Sum_probs=159.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||++.+. ++. .|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-------------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-------------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecC
Confidence 67999999983 112 389999999999999999999999999999997654 3699999998764
Q ss_pred cc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 QE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+...+.++++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 32 224568999999999999999999987532111 11 1233456889999999988777764 589999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCC
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~ 447 (829)
|++|||+|+.+|++++|||||+|||..++..+.+.|++++++ |+|++++.| ++|++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999998764 888855433 35777777764
No 167
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-34 Score=324.45 Aligned_cols=199 Identities=28% Similarity=0.461 Sum_probs=162.9
Q ss_pred CCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcC
Q 044554 223 EPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG 302 (829)
Q Consensus 223 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G 302 (829)
.+..++.+|+++.|+ +++++++|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 356677889999984 234899999999999999999999999999999999998775 379999999
Q ss_pred eecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc------hhhhccC
Q 044554 303 YPKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL------RKALVGL 373 (829)
Q Consensus 303 ~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~------~~~~vg~ 373 (829)
.+..+ ..+++.++||+|++.+++ -|+|||+.++. | +.+++ .+.++++..++.+. .|+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~----~-~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR----P-DASDE----EIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC----C-cCCHH----HHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 87643 568899999999998765 79999999863 1 23333 35666776666554 3566665
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec--------------Cc
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR--------------GG 439 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~--------------~G 439 (829)
. .++|||||+|||++||||+++++++++||||++||.++++.|.+.|.+++++ +|++++.|| +|
T Consensus 453 ~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~~~~~D~I~vld~G 530 (559)
T COG4988 453 G-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLEDAADADRIVVLDNG 530 (559)
T ss_pred C-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHHHhcCCEEEEecCC
Confidence 4 4689999999999999999999999999999999999999999999999874 888665553 56
Q ss_pred EEEEEcCC
Q 044554 440 QEIYVGPL 447 (829)
Q Consensus 440 ~~vy~G~~ 447 (829)
+++..|..
T Consensus 531 ~l~~~g~~ 538 (559)
T COG4988 531 RLVEQGTH 538 (559)
T ss_pred ceeccCCH
Confidence 66666654
No 168
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-34 Score=300.86 Aligned_cols=194 Identities=21% Similarity=0.282 Sum_probs=152.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-CeeEEEEEEcCee
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS-GYITGNIAISGYP 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~-g~~~G~i~i~G~~ 304 (829)
.++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ ...+|+|.++|++
T Consensus 2 ~~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~ 68 (246)
T PRK14269 2 IAKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD 68 (246)
T ss_pred ceeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEe
Confidence 368899999882 35799999999999999999999999999999999997432 1247999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
+.. ...++.++|++|++.+++ .||+||+.++...+... ...++..++++++++.+++......... ...+.|||
T Consensus 69 i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~ 145 (246)
T PRK14269 69 VKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSG 145 (246)
T ss_pred cccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCH
Confidence 643 234567999999988886 69999999865433110 0122334557889999999532211111 12468999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ |+|++++.|
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH 199 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTH 199 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEec
Confidence 999999999999999999999999999999999999999999865 888866554
No 169
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.6e-34 Score=318.41 Aligned_cols=191 Identities=24% Similarity=0.329 Sum_probs=161.1
Q ss_pred CCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee----cCc---cc---c-ccceeEE
Q 044554 249 EDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP----KKQ---ET---F-TCISGYC 317 (829)
Q Consensus 249 ~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~----~~~---~~---~-~~~~~yv 317 (829)
.+...+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+ +.. .. . ++.++||
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567899999999999999999999999999999999997664 36999999963 211 11 1 2469999
Q ss_pred ecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCC
Q 044554 318 EQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANP 397 (829)
Q Consensus 318 ~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p 397 (829)
+|+..+++.+||+||+.++...+ ..+++++.++++++++.+||.+..|... ..||||||||++|||+|+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999886543 2345566677899999999998887754 479999999999999999999
Q ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCCC
Q 044554 398 SIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLGE 449 (829)
Q Consensus 398 ~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~~ 449 (829)
+||+|||||||||+.++.++.+.|+++.++ |+|++++.| ++|+++..|++++
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~e 251 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEE 251 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999875 899855433 4789999998743
No 170
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-34 Score=307.12 Aligned_cols=202 Identities=21% Similarity=0.292 Sum_probs=165.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++++.. ..++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEC
Confidence 4899999999831 1124699999999999999999999999999999999997654 369999999886
Q ss_pred Cc---cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQ---ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.. ...++.++|++|++. .++..||.||+.+..... ..+.++..++++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999974 567789999998765422 1233444467889999999988777643 58999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe--------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK--------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~--------------~~G~~vy~G~ 446 (829)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.||+++.| ++|+++..|+
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~ 223 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAA 223 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999999875 899855433 3577777776
Q ss_pred C
Q 044554 447 L 447 (829)
Q Consensus 447 ~ 447 (829)
.
T Consensus 224 ~ 224 (277)
T PRK13642 224 P 224 (277)
T ss_pred H
Confidence 4
No 171
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-34 Score=301.44 Aligned_cols=184 Identities=27% Similarity=0.402 Sum_probs=152.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 478999999872 35699999999999999999999999999999999997654 369999999876
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCCCCCH
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~~LSg 381 (829)
.. ...++.++|++|++.+++ .||+||+.+....+ . . ..++++++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 42 234567999999988776 69999998754321 1 1 124578889999996 455553 358999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.|+
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 9999999999999999999999999999999999999999999874 8999766553
No 172
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-34 Score=332.72 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=167.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|++++|. ++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 489999999872 35799999999999999999999999999999999997654 369999999876
Q ss_pred Cccc----cccceeEEecCCCCCCCCCHHHHHHHhhhhc--C-C-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 306 KQET----FTCISGYCEQNDIHSPNVTVYESLLYSAWLR--L-P-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 306 ~~~~----~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr--~-~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.... .++.++|++|++.+++.+||+||+.++.... . . ...+.++..++++++++.+|+.+..++.+ +
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 4321 2346999999998899999999998754211 0 0 01123334466889999999988777765 4
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEI 442 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~v 442 (829)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++.| ++|+++
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 79999999999999999999999999999999999999999999999888899854333 468999
Q ss_pred EEcCCCC
Q 044554 443 YVGPLGE 449 (829)
Q Consensus 443 y~G~~~~ 449 (829)
+.|++++
T Consensus 225 ~~g~~~~ 231 (510)
T PRK09700 225 CSGMVSD 231 (510)
T ss_pred eecchhh
Confidence 9988765
No 173
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.4e-34 Score=331.02 Aligned_cols=204 Identities=24% Similarity=0.325 Sum_probs=168.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 389999999882 35799999999999999999999999999999999997654 379999999876
Q ss_pred Ccc----ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 306 KQE----TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 306 ~~~----~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
... ..++.++|++|++.+++.+||+||+.++...+.. ...+.++.+++++++++.+++.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCC
Confidence 421 1245689999999889999999999986432211 11223334456889999999988777665 4799
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEc
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVG 445 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G 445 (829)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++.| ++|+++..|
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999999877888854332 468999888
Q ss_pred CCCC
Q 044554 446 PLGE 449 (829)
Q Consensus 446 ~~~~ 449 (829)
+..+
T Consensus 224 ~~~~ 227 (501)
T PRK10762 224 EVAD 227 (501)
T ss_pred CcCc
Confidence 8765
No 174
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-35 Score=287.60 Aligned_cols=202 Identities=25% Similarity=0.417 Sum_probs=174.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||+++| +.+.+|+|+|+++++|.+++|+|||||||||||.+++...+. .+|+|.++|.++.
T Consensus 2 I~i~nv~K~y-------------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~--d~G~i~i~g~~~~ 66 (252)
T COG4604 2 ITIENVSKSY-------------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK--DSGEITIDGLELT 66 (252)
T ss_pred eeehhhhHhh-------------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc--cCceEEEeeeecc
Confidence 5677888876 568899999999999999999999999999999999996553 3799999999875
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
. +.+.+.++..-|+......+||+|-+.|+....-.... .++.+..+++.++.++|++++|+.. .+|||||
T Consensus 67 ~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRl-t~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQ 140 (252)
T COG4604 67 STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRL-TKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQ 140 (252)
T ss_pred cCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCC-chHHHHHHHHHHHHhcccchHHHhH-----Hhcccch
Confidence 4 34566778889998888899999999998432211222 3445577999999999999999976 4899999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCC
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~ 447 (829)
|||.-||+.++.+.+.++||||.++||-..+.++|+.||+++++ |+||++++| ++|+++..|++
T Consensus 141 rQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 141 RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred hhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCH
Confidence 99999999999999999999999999999999999999999977 999977666 47999999999
Q ss_pred CC
Q 044554 448 GE 449 (829)
Q Consensus 448 ~~ 449 (829)
++
T Consensus 221 ~e 222 (252)
T COG4604 221 DE 222 (252)
T ss_pred HH
Confidence 76
No 175
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=8.1e-34 Score=295.88 Aligned_cols=193 Identities=22% Similarity=0.311 Sum_probs=161.7
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+.. ..+++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~---------~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGH---------GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccC---------CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhH
Confidence 678999998731 01236799999999999999999999999999999999997654 3799999998764
Q ss_pred cc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 307 QE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.. ..++.++|++|++.+++.+|+.||+.+...... ..+.++..+.++++++.+++.+..+..+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 235679999999988888999999998754321 1334445567899999999987777654 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .++|++++.|+
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~ 201 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999986 48999999875
No 176
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=310.71 Aligned_cols=212 Identities=17% Similarity=0.205 Sum_probs=164.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-C-eeEEEEEEcCe
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS-G-YITGNIAISGY 303 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~-g-~~~G~i~i~G~ 303 (829)
.++++||++.|... .+.+.+|+|||+++++||+++|+|+||||||||+++|+|..++ + ..+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37899999998531 1346799999999999999999999999999999999997542 1 24699999998
Q ss_pred ecCcc---c----cccceeEEecCCC--CCCCCCHHHHHHHhhhhcCCCC---CCHHHHHHHHHHHHHHcCCccchhhhc
Q 044554 304 PKKQE---T----FTCISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPE---VDSQTRKMFIEEVMELVELNTLRKALV 371 (829)
Q Consensus 304 ~~~~~---~----~~~~~~yv~Q~~~--~~~~lTV~E~l~f~a~lr~~~~---~~~~~~~~~v~~vl~~l~L~~~~~~~v 371 (829)
++... . .++.++||+|++. +.|.+||.|++........... ....+.++.++++++.+||.+..+..
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~- 152 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM- 152 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH-
Confidence 76431 1 1246999999975 5788999999976432111000 11223446788999999997543221
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe--------------
Q 044554 372 GLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK-------------- 436 (829)
Q Consensus 372 g~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~-------------- 436 (829)
+..+.+||||||||++||+||+.+|++|++||||+|||+.++.+++++|+++.++ |.|+|++.|
T Consensus 153 -~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 153 -RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred -hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 1124689999999999999999999999999999999999999999999999875 889855433
Q ss_pred -cCcEEEEEcCCC
Q 044554 437 -RGGQEIYVGPLG 448 (829)
Q Consensus 437 -~~G~~vy~G~~~ 448 (829)
++|+++..|+.+
T Consensus 232 m~~G~ive~g~~~ 244 (330)
T PRK15093 232 LYCGQTVETAPSK 244 (330)
T ss_pred EECCEEEEECCHH
Confidence 469999999864
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-34 Score=306.01 Aligned_cols=204 Identities=25% Similarity=0.336 Sum_probs=161.4
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC------eeEEEEEE
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG------YITGNIAI 300 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g------~~~G~i~i 300 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 68899999872 357999999999999999999999999999999999975432 12699999
Q ss_pred cCeecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCC
Q 044554 301 SGYPKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGL 376 (829)
Q Consensus 301 ~G~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~ 376 (829)
+|.+... ...++.++|++|++..++.+||+||+.+....... .....++..+.++++++.+++.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9987642 23345689999998766679999999876421110 01111233456788999999987666543
Q ss_pred CCCCHHHHHHHHHHHHhh---------hCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe----------
Q 044554 377 NGLSTEKRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------- 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~---------~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------- 436 (829)
..||||||||++|||+|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.|
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d 223 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHAD 223 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 589999999999999999 599999999999999999999999999999876 888855433
Q ss_pred -----cCcEEEEEcCCC
Q 044554 437 -----RGGQEIYVGPLG 448 (829)
Q Consensus 437 -----~~G~~vy~G~~~ 448 (829)
++|+++..|+.+
T Consensus 224 ~i~~l~~G~i~~~g~~~ 240 (272)
T PRK13547 224 RIAMLADGAIVAHGAPA 240 (272)
T ss_pred EEEEEECCeEEEecCHH
Confidence 357777777653
No 178
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-34 Score=307.42 Aligned_cols=193 Identities=20% Similarity=0.306 Sum_probs=153.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++++... ....+.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKK--------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCC--------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 58999999998310 00013599999999999999999999999999999999997654 369999999875
Q ss_pred Cc--------cccccceeEEecCCCC-CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCC
Q 044554 306 KQ--------ETFTCISGYCEQNDIH-SPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPG 375 (829)
Q Consensus 306 ~~--------~~~~~~~~yv~Q~~~~-~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~ 375 (829)
.. ...++.++|++|++.. +...||+||+.+....+ ....++..+.++++++.++|. +..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 31 2345679999999632 23469999999865322 123344445678899999994 5666543
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++.|
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH 209 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTH 209 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 589999999999999999999999999999999999999999999999764 888865544
No 179
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=300.79 Aligned_cols=200 Identities=22% Similarity=0.261 Sum_probs=158.8
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g---~~~G~i~i~G 302 (829)
-++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 478999999872 356999999999999999999999999999999999964321 2479999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----chhhhccC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT----LRKALVGL 373 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~----~~~~~vg~ 373 (829)
.++.. ...++.++|++|++.+++ .|++||+.+...... ..+.++..++++++++.+++.+ ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKK---- 143 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhC----
Confidence 88642 123567999999988887 899999998754321 1123344456788999998742 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cC
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RG 438 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~ 438 (829)
.++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|++++.| ++
T Consensus 144 -~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~ 221 (251)
T PRK14270 144 -SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLM 221 (251)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEEC
Confidence 2468999999999999999999999999999999999999999999999876 578754433 35
Q ss_pred cEEEEEcCC
Q 044554 439 GQEIYVGPL 447 (829)
Q Consensus 439 G~~vy~G~~ 447 (829)
|+++..|+.
T Consensus 222 G~i~~~~~~ 230 (251)
T PRK14270 222 GDLIEFNKT 230 (251)
T ss_pred CeEEEeCCH
Confidence 777777765
No 180
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=302.28 Aligned_cols=204 Identities=20% Similarity=0.267 Sum_probs=158.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g-~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 489999999872 3569999999999999999999999999999999999653 21 1369999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ...++.++|++|++.+++. ||+||+.+....+. ..++++..+.++++++.+++.+....... ...+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 97642 1335679999999888875 99999988654321 11233344567888999888532111111 1245
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEI 442 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~v 442 (829)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|++++.| ++|+++
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 233 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELV 233 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 8999999999999999999999999999999999999999999999865 788855443 356666
Q ss_pred EEcCC
Q 044554 443 YVGPL 447 (829)
Q Consensus 443 y~G~~ 447 (829)
..|++
T Consensus 234 ~~g~~ 238 (259)
T PRK14274 234 ECNDT 238 (259)
T ss_pred EECCH
Confidence 66654
No 181
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-33 Score=295.93 Aligned_cols=186 Identities=27% Similarity=0.400 Sum_probs=155.6
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. + ++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|++.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDWK-------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEeC-------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcC
Confidence 46788888872 2 279999999999999999999999999999999997654 3699999998865
Q ss_pred cc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 QE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
.. ..++.++|++|++.+++.+|+.||+.+..... ..+..+..+.++++++.++|.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (235)
T cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQ 136 (235)
T ss_pred cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHH
Confidence 31 23467999999999898999999998865332 1233344456788999999988777754 579999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|++++.|
T Consensus 137 rl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH 188 (235)
T cd03299 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH 188 (235)
T ss_pred HHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 999999999999999999999999999999999999998765 889866544
No 182
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.8e-34 Score=315.42 Aligned_cols=180 Identities=26% Similarity=0.387 Sum_probs=152.5
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-------cccccceeEEecCCCCCCCCCH
Q 044554 257 GVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ-------ETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 257 ~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~-------~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 89999999999999999999999999999997654 36999999987632 1235679999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCC
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGL 409 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGL 409 (829)
+||+.++.... ...++.++++++++.++|.+..++.+ +.||||||||++|||+|+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875321 12334456889999999988877754 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCC
Q 044554 410 DARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLG 448 (829)
Q Consensus 410 D~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~ 448 (829)
|+.++..+.+.|++++++ |+|++++.| ++|+++..|+++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHH
Confidence 999999999999999875 888844322 479999998863
No 183
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.5e-34 Score=341.43 Aligned_cols=186 Identities=25% Similarity=0.379 Sum_probs=153.9
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||++.+. +++.+|+|+|++++|||.+||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999998652 2357999999999999999999999999999999999987 4 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~ 374 (829)
+++ ..+++.++||+|++.+++ .|++||+.++. | +.+++ .++++++..++++ -.|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~-~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN----P-DASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhcccccccccccC
Confidence 754 456788999999998775 69999999863 2 23333 2455555555443 346778765
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+ ..||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++. +++|++++.||
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHr 543 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQ 543 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 4 4799999999999999999999999999999999999999999999885 58999888775
No 184
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-34 Score=315.17 Aligned_cols=177 Identities=24% Similarity=0.368 Sum_probs=151.0
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-------cccccceeEEecCCCCCCCCCH
Q 044554 257 GVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ-------ETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 257 ~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~-------~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999997654 37999999987532 1235679999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCC
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGL 409 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGL 409 (829)
+||+.++.. ....+.++++++.++|.+..++.+ +.||||||||++|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112345889999999988877754 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCCC
Q 044554 410 DARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLGE 449 (829)
Q Consensus 410 D~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~~ 449 (829)
|+.++..+.+.|++++++ |+|++++.| ++|+++..|++.+
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 999999999999999875 888854332 4699999998743
No 185
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=299.94 Aligned_cols=193 Identities=29% Similarity=0.359 Sum_probs=150.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CC-CeeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK--TS-GYITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~--~~-g~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|.. .+ +..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 489999999882 356999999999999999999999999999999999963 22 11369999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ....+...+.++++++.+++......... ..++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLH-DSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHh-cCcc
Confidence 87632 124567999999988776 899999988754321 11222334567788888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++||+++.|
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH 205 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTR 205 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEEC
Confidence 8999999999999999999999999999999999999999999999865 688855443
No 186
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-33 Score=298.05 Aligned_cols=193 Identities=23% Similarity=0.323 Sum_probs=151.8
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g-~~~G~i~i~G 302 (829)
.++++||++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478999999882 2469999999999999999999999999999999999643 21 1479999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ..+.++..+.++++++.+++.+........ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKK-SAL 145 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhc-CCC
Confidence 87642 124567999999988777 899999998754321 112333445678888888875311111111 245
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++||+++.|
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH 203 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTH 203 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEe
Confidence 8999999999999999999999999999999999999999999999864 788866554
No 187
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-33 Score=292.68 Aligned_cols=168 Identities=24% Similarity=0.378 Sum_probs=142.7
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-------cccccceeEEecCCCCCCCCCH
Q 044554 257 GVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ-------ETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 257 ~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~-------~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
|+|+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999997654 36999999987531 1235679999999988889999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCC
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGL 409 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGL 409 (829)
+||+.+..... ..+..++.++++++.+++.+..+..+ +.||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 22333456889999999987666643 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 410 DARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 410 D~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|+.++..+.+.|++++++ |+||+++.|+
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~ 191 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHD 191 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecC
Confidence 999999999999999875 8898887764
No 188
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=298.87 Aligned_cols=193 Identities=22% Similarity=0.301 Sum_probs=152.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g---~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 378999999872 356999999999999999999999999999999999965421 2479999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ...++.++|++|++.+++ .||+||+.+...... ....+...+.+++.++.+++.+..+.... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELN-KPGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChh
Confidence 87642 123567999999988877 899999998654321 11223334557888888888642111111 1346
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++++ ++|++++.|
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH 203 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTH 203 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeC
Confidence 8999999999999999999999999999999999999999999999875 688865544
No 189
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.3e-33 Score=302.95 Aligned_cols=199 Identities=19% Similarity=0.269 Sum_probs=157.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+++|..+.. ....+.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 3899999999842100 0001235699999999999999999999999999999999997654 379999999876
Q ss_pred Ccc---ccccceeEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCCCC
Q 044554 306 KQE---TFTCISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLNGL 379 (829)
Q Consensus 306 ~~~---~~~~~~~yv~Q~~~--~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~~L 379 (829)
... ..++.++|++|++. +.+.+||.|++.+....+. ....++..+.++++++.+++. +..+..+ ..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhc
Confidence 421 22356899999874 5678899999988654331 123334445688999999994 5555543 579
Q ss_pred CHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 380 STEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 380 SgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++.|+
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~ 209 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 999999999999999999999999999999999999999999999875 8898766553
No 190
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-34 Score=320.11 Aligned_cols=187 Identities=28% Similarity=0.422 Sum_probs=155.8
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
+..++|+||+++|. +++++|+++||+|++||.+||+|+|||||||++|+|.+..+. +|+|++||.
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~---sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY---SGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc---CCcEEECCe
Confidence 45699999999983 345699999999999999999999999999999999997652 699999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-------cchhhhccC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-------TLRKALVGL 373 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~ 373 (829)
++++ +.+|+.+||||||..++ +-||.+|+.|+.. ..+.++ |-++.+..++. +-.+|.+|+
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccchhhHhh
Confidence 8754 56788999999998776 5799999999741 233332 44445555544 345566887
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
.+ ..|||||||||+|||+++.||+|+++|||||.||+.+..++++.+++ ...++|++++.|+
T Consensus 484 rG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~ 545 (591)
T KOG0057|consen 484 RG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHR 545 (591)
T ss_pred cc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEec
Confidence 65 46999999999999999999999999999999999999999999999 4468999888775
No 191
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.7e-33 Score=328.08 Aligned_cols=205 Identities=22% Similarity=0.361 Sum_probs=166.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..+++..+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 67899999872 35799999999999999999999999999999999997654223799999998864
Q ss_pred ccc----cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCccch-hhhccCCCCCCCC
Q 044554 307 QET----FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPP-EVDSQTRKMFIEEVMELVELNTLR-KALVGLPGLNGLS 380 (829)
Q Consensus 307 ~~~----~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~L~~~~-~~~vg~~~~~~LS 380 (829)
... .++.++|++|++.+++.+||+||+.+....+... ..+.++..++++++++.+++.+.. ++.+ +.||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 321 2356899999998899999999998865332111 122333446688999999997654 3433 4799
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEc
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVG 445 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G 445 (829)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++.| ++|+++..|
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 99999999999999999999999999999999999999999999888999854333 468888888
Q ss_pred CCCC
Q 044554 446 PLGE 449 (829)
Q Consensus 446 ~~~~ 449 (829)
+..+
T Consensus 224 ~~~~ 227 (500)
T TIGR02633 224 DMST 227 (500)
T ss_pred Cccc
Confidence 7754
No 192
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=299.03 Aligned_cols=193 Identities=20% Similarity=0.279 Sum_probs=151.0
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEEcCe
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-YITGNIAISGY 303 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g-~~~G~i~i~G~ 303 (829)
-+++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|... +. ..+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 46789998872 3579999999999999999999999999999999999753 11 24799999998
Q ss_pred ecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCC
Q 044554 304 PKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG 378 (829)
Q Consensus 304 ~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 378 (829)
++.. ...++.++|++|++.+++. ||+||+.+....+. .....++.++.++++++.+++.+........ .+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1245679999999888775 99999988643321 1112233345678899999986532211111 2358
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+||+++.|
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH 206 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTH 206 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999985 4888865544
No 193
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=302.86 Aligned_cols=192 Identities=22% Similarity=0.289 Sum_probs=151.1
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEEc
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GYITGNIAIS 301 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~---g~~~G~i~i~ 301 (829)
..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ...+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4699999999882 35799999999999999999999999999999999997542 1247999999
Q ss_pred CeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCC
Q 044554 302 GYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGL 376 (829)
Q Consensus 302 G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~ 376 (829)
|.++.. ...++.++|++|++.+++ .||+||+.+.+..+. ... +..+.++++++.+++....+.... ..+
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 152 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLN-ESG 152 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhC-CCc
Confidence 987531 234567999999998887 599999998764331 122 223456778888877421111111 124
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++.|
T Consensus 153 ~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH 211 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTH 211 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 58999999999999999999999999999999999999999999999864 688866554
No 194
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=300.24 Aligned_cols=186 Identities=22% Similarity=0.321 Sum_probs=150.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-e--eEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-Y--ITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g-~--~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++. . .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 589999999882 356999999999999999999999999999999999965421 1 379999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----chhhhccC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT----LRKALVGL 373 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~----~~~~~vg~ 373 (829)
.++.. ...++.++|++|++.+++ .||+||+.++...+. ..++.+..+.++++++.+++.+ ..++
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 146 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK---- 146 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC----
Confidence 87632 123567999999988887 899999988754331 1223333456788889888742 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLF 433 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvll 433 (829)
.+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++||++
T Consensus 147 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii 204 (259)
T PRK14260 147 -SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAI 204 (259)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEE
Confidence 2468999999999999999999999999999999999999999999999865 588844
No 195
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=297.84 Aligned_cols=193 Identities=20% Similarity=0.263 Sum_probs=151.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g---~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ...|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 488999999872 356999999999999999999999999999999999975431 1359999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ..+++..+.++++++.+++.+..+.... ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87632 1345679999999988875 999999987543211 1122233456778888887532111111 1246
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +++|||++.|
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh 204 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTH 204 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999985 5788865543
No 196
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=298.46 Aligned_cols=190 Identities=24% Similarity=0.291 Sum_probs=151.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCe---eEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGY---ITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~---~~G~i~i~G 302 (829)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++.. .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 478999999872 3579999999999999999999999999999999999754321 369999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----chhhhccC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT----LRKALVGL 373 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~----~~~~~vg~ 373 (829)
.++.. ...++.++|++|++.+++.+|+.||+.+...... ...+++..+.+++.++.+++.. ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 1335679999999999999999999987653221 1122333455677777776542 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
++.||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++++ ++|++++.|
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH 205 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTH 205 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeC
Confidence 458999999999999999999999999999999999999999999999864 688865544
No 197
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-34 Score=348.23 Aligned_cols=203 Identities=29% Similarity=0.454 Sum_probs=165.5
Q ss_pred CCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcC
Q 044554 223 EPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG 302 (829)
Q Consensus 223 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G 302 (829)
....++|+||+|+|+. ..+..+|+|+|+.|++|+.+||+|||||||||++++|.+..+| .+|+|.+||
T Consensus 347 ~~g~ief~nV~FsYPs----------Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPS----------RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCC----------CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEEEcC
Confidence 3567999999999963 2356899999999999999999999999999999999998775 479999999
Q ss_pred eecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHH-------cCCccchhhhcc
Q 044554 303 YPKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMEL-------VELNTLRKALVG 372 (829)
Q Consensus 303 ~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~-------l~L~~~~~~~vg 372 (829)
.++.. +.+|+.+|.|.|+|.++ ..||+||+.|+. ++.+.++ ++++.++ ..|.+-.|+.+|
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhccccc
Confidence 98754 45678899999999766 589999999973 1222222 2222222 235566788898
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cC
Q 044554 373 LPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RG 438 (829)
Q Consensus 373 ~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~ 438 (829)
..++ .||||||||++|||||+.||+||+||||||+||+.++..+.+.|++.. +|+|.|++.| ++
T Consensus 485 e~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLStIrnaD~I~v~~~ 562 (1228)
T KOG0055|consen 485 ERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLSTIRNADKIAVMEE 562 (1228)
T ss_pred CCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhhhhccCEEEEEEC
Confidence 8765 599999999999999999999999999999999999999999998865 4777644333 47
Q ss_pred cEEEEEcCCCC
Q 044554 439 GQEIYVGPLGE 449 (829)
Q Consensus 439 G~~vy~G~~~~ 449 (829)
|+++..|..+|
T Consensus 563 G~IvE~G~h~E 573 (1228)
T KOG0055|consen 563 GKIVEQGTHDE 573 (1228)
T ss_pred CEEEEecCHHH
Confidence 99999998754
No 198
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-33 Score=297.04 Aligned_cols=193 Identities=24% Similarity=0.298 Sum_probs=151.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG---YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g---~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|++.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 478999999872 356999999999999999999999999999999999975431 2479999999
Q ss_pred eecCc----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCC
Q 044554 303 YPKKQ----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG 378 (829)
Q Consensus 303 ~~~~~----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 378 (829)
.++.. ...++.++|++|++.+++ .||+||+.+...... ..+++...+.+++.++.+++.+....... ..+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 87631 234567999999988887 899999988643221 11223334567788888887532211111 12458
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++||+++.|
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh 202 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTH 202 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 999999999999999999999999999999999999999999999976 588865544
No 199
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.6e-33 Score=299.17 Aligned_cols=189 Identities=24% Similarity=0.280 Sum_probs=151.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee-
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP- 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~- 304 (829)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 489999999872 24699999999999999999999999999999999997654 36999999987
Q ss_pred ----cCcc---c----cccceeEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhh
Q 044554 305 ----KKQE---T----FTCISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKAL 370 (829)
Q Consensus 305 ----~~~~---~----~~~~~~yv~Q~~~--~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~ 370 (829)
+... . .++.++|++|+.. +.+.+|+.||+.+...... ..+..+..+.++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999973 5677899999976432111 1122234456788999999963 44543
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 371 VGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 371 vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.||+++.|
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH 210 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 3589999999999999999999999999999999999999999999998765 888866554
No 200
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=302.25 Aligned_cols=204 Identities=24% Similarity=0.392 Sum_probs=159.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 589999999883 235699999999999999999999999999999999997654 379999999876
Q ss_pred CccccccceeEEecCCCCC--CCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 306 KQETFTCISGYCEQNDIHS--PNVTVYESLLYSAWLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~--~~lTV~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
.....++.++|++|++.+. ...+++|++.++...... .....++..+.++++++.+++.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234589999997542 245789998754211000 00111223345788899999988777754 479999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec--------------CcEEEEEcCCC
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR--------------GGQEIYVGPLG 448 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~--------------~G~~vy~G~~~ 448 (829)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+||+++.|+ +|+++..|+.+
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~ 226 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTE 226 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHH
Confidence 9999999999999999999999999999999999999999998778898654432 46777766654
No 201
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.6e-33 Score=295.78 Aligned_cols=173 Identities=27% Similarity=0.373 Sum_probs=144.5
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHH
Q 044554 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLL 334 (829)
Q Consensus 255 L~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~ 334 (829)
|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.... ...+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999997654 3799999998865322 22489999999999999999998
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHH
Q 044554 335 YSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAA 414 (829)
Q Consensus 335 f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~ 414 (829)
+......+ ..++++..+.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 86321111 2333444556889999999987777654 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEec
Q 044554 415 AIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 415 ~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
..+.+.|++++++ |+||+++.|+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999999765 8898776653
No 202
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.8e-33 Score=294.28 Aligned_cols=186 Identities=23% Similarity=0.372 Sum_probs=154.0
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEc
Confidence 589999999872 35699999999999999999999999999999999997554 379999999876
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCCCCCH
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~~LSg 381 (829)
.. ...++.++|++|++.+++ .||+||+.+....+.. .. ..+.++++++.+++. ...++. ++.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 42 124567899999988776 5999999876443211 11 124567899999995 355554 358999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |.||+++.|+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 9999999999999999999999999999999999999999998764 8899888865
No 203
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-33 Score=299.83 Aligned_cols=193 Identities=22% Similarity=0.277 Sum_probs=152.5
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEEc
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GYITGNIAIS 301 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~---g~~~G~i~i~ 301 (829)
..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ...+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3589999999882 35699999999999999999999999999999999997542 1247999999
Q ss_pred CeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCC
Q 044554 302 GYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGL 376 (829)
Q Consensus 302 G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~ 376 (829)
|.+... ...++.++|++|++.+++. ||+||+.+....+. ...+++.++.++++++.+++.+......+. .+
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHE-NA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhC-Cc
Confidence 988642 1345679999999888875 99999988654321 112223345678888988886421111111 24
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEE
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLL 435 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll 435 (829)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|++++.
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivt 224 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVT 224 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEe
Confidence 58999999999999999999999999999999999999999999999976 67875543
No 204
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=278.92 Aligned_cols=201 Identities=22% Similarity=0.312 Sum_probs=166.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.+..+|+..+| +...+|++||+..+.|+++.|+|.|||||||+|+||.-..++ ..|.|.+||..+
T Consensus 6 ~l~v~dlHK~~-------------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P--~~G~I~v~geei 70 (256)
T COG4598 6 ALEVEDLHKRY-------------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEEI 70 (256)
T ss_pred ceehhHHHhhc-------------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC--CCceEEECCeEE
Confidence 46777777766 567899999999999999999999999999999999986655 369999999764
Q ss_pred Cc-------------c---ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhh
Q 044554 306 KQ-------------E---TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKA 369 (829)
Q Consensus 306 ~~-------------~---~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~ 369 (829)
.. + ..|.+.|+|+|+..+++.+||.||+.-+-.-- -..++.+..++.+..++..|+.+.+|.
T Consensus 71 ~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~ 148 (256)
T COG4598 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADA 148 (256)
T ss_pred EeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhc
Confidence 21 1 12345799999999999999999997542111 124566777888999999999988886
Q ss_pred hccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe-------------
Q 044554 370 LVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK------------- 436 (829)
Q Consensus 370 ~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~------------- 436 (829)
. +..|||||+||++|||||+.+|+++++|||||+||++-.-++++.+++++++|+|.+++.|
T Consensus 149 Y-----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~ 223 (256)
T COG4598 149 Y-----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI 223 (256)
T ss_pred C-----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheE
Confidence 4 4589999999999999999999999999999999999999999999999999999854433
Q ss_pred --cCcEEEEEcCCC
Q 044554 437 --RGGQEIYVGPLG 448 (829)
Q Consensus 437 --~~G~~vy~G~~~ 448 (829)
++|++-..|++.
T Consensus 224 fLh~G~iEE~G~P~ 237 (256)
T COG4598 224 FLHQGKIEEEGPPE 237 (256)
T ss_pred EeecceecccCChH
Confidence 357777777774
No 205
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.1e-33 Score=327.76 Aligned_cols=197 Identities=22% Similarity=0.348 Sum_probs=165.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||||+|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 489999999882 35699999999999999999999999999999999997654 379999999876
Q ss_pred Cccc----cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQET----FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~~~----~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.... .++.++|++|++.+++.+||+||+.+.... .++.++.++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 4321 124589999999999999999999885321 1223456789999999988777755 47999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~ 446 (829)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++.| ++|++++.|+
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~ 223 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGK 223 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999999888999854332 4688888887
Q ss_pred CCC
Q 044554 447 LGE 449 (829)
Q Consensus 447 ~~~ 449 (829)
.++
T Consensus 224 ~~~ 226 (510)
T PRK15439 224 TAD 226 (510)
T ss_pred hHH
Confidence 754
No 206
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.7e-33 Score=292.55 Aligned_cols=195 Identities=24% Similarity=0.313 Sum_probs=155.3
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEc--Ce-
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAIS--GY- 303 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~--G~- 303 (829)
++++|+++.|....+ ...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 678999999842100 00125799999999999999999999999999999999997654 36999998 42
Q ss_pred -ecCc---cc----cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-hhhhccCC
Q 044554 304 -PKKQ---ET----FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-RKALVGLP 374 (829)
Q Consensus 304 -~~~~---~~----~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~~vg~~ 374 (829)
+... .. .++.++|++|++.+++.+||+|++.+..... ..+.++..+.++++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3211 11 1346899999998999999999998864322 12333334567889999999753 3443
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+||+++.|+
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35899999999999999999999999999999999999999999999998789999998874
No 207
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.2e-34 Score=339.06 Aligned_cols=200 Identities=27% Similarity=0.414 Sum_probs=161.6
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++|+|++|.|+ +++.+|+|+|++++|||.+||+||||||||||+|+|.|..++ .+|+|.+||.
T Consensus 326 ~~~I~f~~vsf~y~------------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~ 391 (567)
T COG1132 326 IGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGI 391 (567)
T ss_pred CCeEEEEEEEEEcC------------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCE
Confidence 34699999999984 246899999999999999999999999999999999998765 3799999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHH-----HHHHHHHcCCccchhhhccCCC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMF-----IEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~-----v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
+++. ..+|+.++||+||+.++. .||+||+.++.. +.++++-.+. .++.++. +.+-.|+.+|..|
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge~G 463 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIAN--LPDGYDTIVGERG 463 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHh--CcccccceecCCC
Confidence 8754 456888999999998887 899999998742 1233322211 2222332 2445788888543
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcEE
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQE 441 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~~ 441 (829)
..||||||||++||||+++||++|+||||||+||+.++..|.+.++++. +++|++++.| ++|++
T Consensus 464 -~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i 541 (567)
T COG1132 464 -VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRI 541 (567)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999999877 5688855544 36778
Q ss_pred EEEcCC
Q 044554 442 IYVGPL 447 (829)
Q Consensus 442 vy~G~~ 447 (829)
+..|+.
T Consensus 542 ~e~G~h 547 (567)
T COG1132 542 VERGTH 547 (567)
T ss_pred EEecCH
Confidence 887775
No 208
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-33 Score=297.02 Aligned_cols=210 Identities=22% Similarity=0.316 Sum_probs=171.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-C-Ce-eEEEEEEcCe
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT-S-GY-ITGNIAISGY 303 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~-~-g~-~~G~i~i~G~ 303 (829)
++++||+.++... .+..++++||||++++||++||+|+|||||||+.+.|.|..+ + +. .+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 6789999998642 235789999999999999999999999999999999999654 2 44 4589999999
Q ss_pred ecCc---c---c-cccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCC-CHHHHHHHHHHHHHHcCCccchhhhccC
Q 044554 304 PKKQ---E---T-FTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEV-DSQTRKMFIEEVMELVELNTLRKALVGL 373 (829)
Q Consensus 304 ~~~~---~---~-~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~-~~~~~~~~v~~vl~~l~L~~~~~~~vg~ 373 (829)
++-. + . +.+.+++++|++ .+.|.+||.+.+.-..+.+. .. ++++..+++.++++.+++.+-....-.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~- 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKS- 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhh-
Confidence 6532 1 1 234799999996 57889999998876655432 12 355566788999999999876544433
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEe---------------c
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLK---------------R 437 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~---------------~ 437 (829)
.+.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.+++++.| .
T Consensus 150 -YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMY 228 (316)
T COG0444 150 -YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMY 228 (316)
T ss_pred -CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEE
Confidence 3579999999999999999999999999999999999999999999999987 5888866554 3
Q ss_pred CcEEEEEcCCCC
Q 044554 438 GGQEIYVGPLGE 449 (829)
Q Consensus 438 ~G~~vy~G~~~~ 449 (829)
.|++|..|+..+
T Consensus 229 aG~iVE~g~~~~ 240 (316)
T COG0444 229 AGRIVEEGPVEE 240 (316)
T ss_pred CcEEEEeCCHHH
Confidence 799999999754
No 209
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=297.50 Aligned_cols=193 Identities=26% Similarity=0.322 Sum_probs=151.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--C-eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS--G-YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~--g-~~~G~i~i~G 302 (829)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|.... . ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 489999999872 35799999999999999999999999999999999996431 1 1369999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ...++.++|++|++.+++ .||+||+.+....+. ..+..+.++.++++++.+++.+......+ ....
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 88642 223567899999998887 499999998754331 11222334567888888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++||+++.|
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh 206 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTH 206 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEc
Confidence 8999999999999999999999999999999999999999999999876 578865544
No 210
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-33 Score=297.94 Aligned_cols=194 Identities=21% Similarity=0.281 Sum_probs=153.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-C--eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS-G--YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~-g--~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ | ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 589999999882 24699999999999999999999999999999999996543 2 1359999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ...++.++|++|+..+++ .|++||+.+...... ..+..+..+.++++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 134567999999988887 899999988653321 112233345678899999885432222221 246
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~ 436 (829)
.||||||||++|||+|+.+|++++|||||+|||..++..+.+.|+++++ +|+||+++.|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH 209 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999875 4888855443
No 211
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-33 Score=300.25 Aligned_cols=204 Identities=24% Similarity=0.318 Sum_probs=160.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--C-eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS--G-YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~--g-~~~G~i~i~G 302 (829)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ | ..+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 589999999982 35799999999999999999999999999999999997543 1 2479999999
Q ss_pred eecCc----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCC
Q 044554 303 YPKKQ----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG 378 (829)
Q Consensus 303 ~~~~~----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 378 (829)
.++.. ...++.++|++|++.+++ .||+||+.+..... ...+.++..+.++++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 134567999999988777 89999998764322 112333444556788899998753322221 12468
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEE
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIY 443 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy 443 (829)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++.| ++|+++.
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999876 478855443 3466666
Q ss_pred EcCC
Q 044554 444 VGPL 447 (829)
Q Consensus 444 ~G~~ 447 (829)
.|+.
T Consensus 243 ~g~~ 246 (276)
T PRK14271 243 EGPT 246 (276)
T ss_pred eCCH
Confidence 6664
No 212
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-33 Score=285.89 Aligned_cols=165 Identities=55% Similarity=0.858 Sum_probs=141.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|... .+++.+|+|+|+++++||+++|+||||||||||+++|+|.......+|++.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47899999998421 112579999999999999999999999999999999999642122479999999886
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
. ...++.++|++|++.+++.+||+||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~----------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL---------------R----------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH---------------h----------------------cCCHHHhH
Confidence 5 34556799999999889999999999864210 0 59999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|++|||+|+.+|++++|||||+|||+.++..+.+.+++++++|+|++++.|+
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~ 167 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQ 167 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcC
Confidence 9999999999999999999999999999999999999998778999888875
No 213
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.2e-33 Score=341.30 Aligned_cols=195 Identities=28% Similarity=0.392 Sum_probs=160.2
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+|+|+. +++.+|+|+|++++|||.+||+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 46999999999941 235799999999999999999999999999999999998765 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 374 (829)
+++ ..+|+.++||+|++.+++ .|++||+.++. | .+++ .++++++..++.+. .|+.+|+.
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhccccccccccCC
Confidence 754 456788999999998875 69999999752 1 2332 35667777776543 35667754
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcE
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQ 440 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~ 440 (829)
+ ..||||||||++|||||+++|++|+||||||+||+.+++++.+.|+++ ++|++++.| ++|+
T Consensus 586 G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 586 G-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGR 661 (686)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCE
Confidence 4 579999999999999999999999999999999999999999999886 578865554 3577
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
++..|+.
T Consensus 662 iv~~G~~ 668 (686)
T TIGR03797 662 VVQQGTY 668 (686)
T ss_pred EEEECCH
Confidence 7777764
No 214
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-33 Score=296.93 Aligned_cols=189 Identities=21% Similarity=0.270 Sum_probs=149.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--S-GYITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~-g~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|... + ...+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 489999999882 3569999999999999999999999999999999999532 1 12469999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----chhhhccC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT----LRKALVGL 373 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~----~~~~~vg~ 373 (829)
.++.. ...++.++|++|++.+++. |++||+.+...... ........+.+++.++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1235679999999888774 99999987643221 1112223345677888888752 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++||+++.|
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH 221 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTH 221 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEe
Confidence 458999999999999999999999999999999999999999999999965 678855443
No 215
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-33 Score=294.50 Aligned_cols=189 Identities=25% Similarity=0.334 Sum_probs=151.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g-~~~G~i~i~G 302 (829)
.++++|+++++. .+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 489999999882 3579999999999999999999999999999999999754 11 2479999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----chhhhccC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT----LRKALVGL 373 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~----~~~~~vg~ 373 (829)
.+... ...++.++|++|++.+++ .||+||+.+....+. ..+.+...+.++++++.+++.. ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR---- 143 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc----
Confidence 87632 124567999999988775 799999987643221 1122223355788889888842 2232
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.||+++.|
T Consensus 144 -~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH 204 (251)
T PRK14251 144 -NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTH 204 (251)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEEC
Confidence 2458999999999999999999999999999999999999999999999864 688866654
No 216
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.8e-33 Score=296.42 Aligned_cols=188 Identities=23% Similarity=0.269 Sum_probs=151.4
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--eeEEEEEEcC
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--YITGNIAISG 302 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g--~~~G~i~i~G 302 (829)
..++++|++++++ +.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3689999999861 35999999999999999999999999999999999976541 1479999999
Q ss_pred eecCcccc-ccceeEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc---hhhhccCCCC
Q 044554 303 YPKKQETF-TCISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL---RKALVGLPGL 376 (829)
Q Consensus 303 ~~~~~~~~-~~~~~yv~Q~~~--~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~---~~~~vg~~~~ 376 (829)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ... ..+.++++++.+++.+. .++. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 88643222 356999999974 4566899999876543221 111 12557889999999762 3443 3
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.|
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH 199 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 589999999999999999999999999999999999999999999999764 889876654
No 217
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-33 Score=285.30 Aligned_cols=181 Identities=20% Similarity=0.306 Sum_probs=151.7
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++++. ++.+++ +|+++++||+++|+|+||||||||+++|+|..++ .+|++.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCcccC
Confidence 67899999872 234565 9999999999999999999999999999997654 3799999998764
Q ss_pred ccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHH
Q 044554 307 QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKR 386 (829)
Q Consensus 307 ~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqR 386 (829)
... ++.++|++|+..+++..||+||+.+..... . ..+.++++++.+++.+..++.+ +.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHH
Confidence 322 345899999988888999999998764322 1 1234678889999987666643 5799999999
Q ss_pred HHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 387 LTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 387 lsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
++|||+|+.+|++++|||||+|||+.++..+.+.+++..++|+|++++.|+
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 182 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHL 182 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 999999999999999999999999999999999998777778999998875
No 218
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1e-33 Score=298.32 Aligned_cols=185 Identities=24% Similarity=0.385 Sum_probs=140.9
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 468899988731 235699999999999999999999999999999999997654 3699999998753
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHH-----HHHHHHHHHc--CCccchhhhccCCCC
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRK-----MFIEEVMELV--ELNTLRKALVGLPGL 376 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~-----~~v~~vl~~l--~L~~~~~~~vg~~~~ 376 (829)
. ...++.++|++|++.++ ..||+||+.+... ....+... ...++.++.+ ++....+. .+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLF-NRSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QG 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhc-cchHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CC
Confidence 2 23456799999998766 4799999987431 11111100 1112333333 33333332 24
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+||+++.|
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH 195 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAH 195 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeC
Confidence 68999999999999999999999999999999999999999999999874 888866544
No 219
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.1e-32 Score=293.25 Aligned_cols=194 Identities=23% Similarity=0.327 Sum_probs=153.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|.......+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 489999999872 3569999999999999999999999999999999999621112479999999876
Q ss_pred Ccc---cccc-ceeEEecCCCCCCCCCHHHHHHHhhhhcCC----CCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCC
Q 044554 306 KQE---TFTC-ISGYCEQNDIHSPNVTVYESLLYSAWLRLP----PEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGL 376 (829)
Q Consensus 306 ~~~---~~~~-~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~----~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~ 376 (829)
... ..++ .++|++|++.+++.+|+.|++.+....... ...+..+..+.++++++.+++. +..++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 1222 478999999999999999999875432110 0112223345678889999986 34454432
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
..||||||||++||++|+.+|++++|||||+|||..++..+.+.|++++++|+|||++.|
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH 209 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 259999999999999999999999999999999999999999999999877899876654
No 220
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-33 Score=271.64 Aligned_cols=193 Identities=26% Similarity=0.362 Sum_probs=162.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.+..++++..+.. ..+...||++|++.+++||.+||+|||||||||||-+|+|...+ .+|+|.+.|++.
T Consensus 6 ii~~~~l~ktvg~---------~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L 74 (228)
T COG4181 6 IIEVHHLSKTVGQ---------GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPL 74 (228)
T ss_pred eeehhhhhhhhcC---------CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcch
Confidence 4778888887742 24568899999999999999999999999999999999997654 379999999986
Q ss_pred Ccc------c-cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCC
Q 044554 306 KQE------T-FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG 378 (829)
Q Consensus 306 ~~~------~-~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 378 (829)
.+. . ..+.+|+|+|...+.|++|..||+...+.++... ..+..+...+.++.+||.+..+.. +.+
T Consensus 75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~Hy-----P~q 146 (228)
T COG4181 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHY-----PAQ 146 (228)
T ss_pred hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccC-----ccc
Confidence 431 1 2467999999999999999999999888776432 222334578899999998766654 458
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|||||+|||+||||++..|+|||.||||-+||..+..+|.+++-.+.++ |.|.+++.|+
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD 206 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHD 206 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCC
Confidence 9999999999999999999999999999999999999999999998754 8888888864
No 221
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=332.27 Aligned_cols=189 Identities=23% Similarity=0.321 Sum_probs=155.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+|+|+. +++.+|+|+|+++++||.+||+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 46999999999841 235699999999999999999999999999999999998765 36999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~ 374 (829)
.++ ..+++.++||+|++.+++ .|++||+.++. +...+++ .++++++..++.+ -.|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 754 346778999999988775 79999998752 2223333 3556666666443 346777765
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+ +.||||||||++|||+|+++|++++||||||+||+.++..+++.|+++. +++|++++.|+
T Consensus 478 g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr 538 (582)
T PRK11176 478 G-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHR 538 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence 4 5799999999999999999999999999999999999999999999975 47999887765
No 222
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-33 Score=304.37 Aligned_cols=207 Identities=19% Similarity=0.246 Sum_probs=162.9
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEEc
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GYITGNIAIS 301 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~---g~~~G~i~i~ 301 (829)
..++++|++++|.. +.+.+|+|+|+++++||++||+||||||||||+++|+|.... ...+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46999999999841 235699999999999999999999999999999999996531 1246999999
Q ss_pred CeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCC-HHHHHHHHHHHHHHcCCccchhhhccCCC
Q 044554 302 GYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVD-SQTRKMFIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 302 G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~-~~~~~~~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
|.++.. ...++.++||+|++.+++ .|++||+.|+.... ..+ ++...+.++++++.++|.+-.++.++..
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~- 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA- 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-
Confidence 998742 234667999999988774 89999999864321 122 2223345778888888754333444433
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcE
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQ 440 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~ 440 (829)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|++.| ++|+
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~ 301 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGW 301 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 458999999999999999999999999999999999999999999999876 688855443 3577
Q ss_pred EEEEcCCC
Q 044554 441 EIYVGPLG 448 (829)
Q Consensus 441 ~vy~G~~~ 448 (829)
++..|++.
T Consensus 302 i~e~g~~~ 309 (329)
T PRK14257 302 IEEAGETK 309 (329)
T ss_pred EEEeCCHH
Confidence 77777653
No 223
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-33 Score=299.63 Aligned_cols=189 Identities=21% Similarity=0.311 Sum_probs=150.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--S-GYITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~-g~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ + ...+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 589999999882 2469999999999999999999999999999999999632 1 01379999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc----cchhhhccC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN----TLRKALVGL 373 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~----~~~~~~vg~ 373 (829)
.++.. ...++.++|++|++.+++. ||+||+.+....+.. .+.+..++.++++++.+++. +..+.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 178 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDK---- 178 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhC----
Confidence 87532 1245679999999888774 999999987543211 12223345677888888874 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++.|
T Consensus 179 -~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH 239 (286)
T PRK14275 179 -NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTH 239 (286)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeC
Confidence 2458999999999999999999999999999999999999999999999875 578865544
No 224
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=324.06 Aligned_cols=200 Identities=25% Similarity=0.315 Sum_probs=163.5
Q ss_pred EeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc-
Q 044554 230 DDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE- 308 (829)
Q Consensus 230 ~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~- 308 (829)
+|++++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++...
T Consensus 2 ~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~ 66 (491)
T PRK10982 2 SNISKSF-------------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKS 66 (491)
T ss_pred CceEEEe-------------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCC
Confidence 5777776 235799999999999999999999999999999999997654 379999999876421
Q ss_pred ---ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 309 ---TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 309 ---~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
..++.++|++|+..+++.+||+||+.+..........+.++..+.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 141 (491)
T PRK10982 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQ 141 (491)
T ss_pred HHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHH
Confidence 234569999999988899999999987642110101123334456889999999987777654 479999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcCCCC
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGPLGE 449 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~~~~ 449 (829)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++.| ++|+++..|++.+
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence 999999999999999999999999999999999999999888999854332 4689999988765
No 225
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-33 Score=335.57 Aligned_cols=186 Identities=22% Similarity=0.370 Sum_probs=155.4
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|++|.|+ +++.+|+|+|+++++||.+||+|+||||||||+|+|+|..++. +|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~------------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYR------------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeC------------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CceEEECCEE
Confidence 4699999999983 1245999999999999999999999999999999999987653 6999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccch-------hhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLR-------KALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-------~~~vg~~ 374 (829)
+++ ..+++.++||+|++.+++ .|++||+.++. +.++ +.++++++..|+.+.. |+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 753 356788999999998887 59999999862 1222 2367777777766433 5566653
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+ ..||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++.+ ++|++++.||
T Consensus 474 g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr 534 (592)
T PRK10790 474 G-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHR 534 (592)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecc
Confidence 3 57999999999999999999999999999999999999999999999864 6898777664
No 226
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=7.5e-33 Score=297.21 Aligned_cols=198 Identities=24% Similarity=0.326 Sum_probs=155.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.+.... ..+ ...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~ 76 (268)
T PRK10419 3 LLNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPL 76 (268)
T ss_pred eEEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEec
Confidence 378999999884100 000 01136799999999999999999999999999999999997654 379999999876
Q ss_pred Ccc------ccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCC
Q 044554 306 KQE------TFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGL 376 (829)
Q Consensus 306 ~~~------~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~ 376 (829)
... ..++.++|++|+. .+.+..|+.|++.+..... ...+.++..+.++++++.+++. +..++. +
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 149 (268)
T PRK10419 77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----P 149 (268)
T ss_pred cccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----C
Confidence 421 2356799999997 3567899999997653211 1123344455789999999996 455554 3
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
+.||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|++++++ |.|+|++.|
T Consensus 150 ~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH 210 (268)
T PRK10419 150 PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITH 210 (268)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEEC
Confidence 579999999999999999999999999999999999999999999999865 888866544
No 227
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-33 Score=293.64 Aligned_cols=193 Identities=26% Similarity=0.347 Sum_probs=149.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g-~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 489999999882 3579999999999999999999999999999999999642 21 1379999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ...++.++|++|++.+++ .||+||+.+....+.. ...+...+.+.+.++.+++......... ..+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLH-ESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHh-cCcc
Confidence 87632 134567999999988887 7999999986543211 1122223446677787776421111111 1245
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|++++.|
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH 205 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTH 205 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999976 478865544
No 228
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-33 Score=298.53 Aligned_cols=192 Identities=22% Similarity=0.283 Sum_probs=149.0
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--C-CeeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--S-GYITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~-g~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ + ...+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999999883 2469999999999999999999999999999999999653 1 12479999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGL 376 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~ 376 (829)
.++.. ...++.++|++|++.+++ .||+||+.++...+. ..+++...+.+++.++.+++.+ +.+. .. ..+
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~-~~~ 165 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDR-LH-DNA 165 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHH-Hh-cCc
Confidence 87632 134567999999988777 599999998754321 1122222345677777775432 2211 11 124
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++||+++.|
T Consensus 166 ~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH 224 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTH 224 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEc
Confidence 68999999999999999999999999999999999999999999999876 688855443
No 229
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7e-33 Score=289.75 Aligned_cols=169 Identities=25% Similarity=0.346 Sum_probs=140.2
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCH
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCCcH
Confidence 457899999999999999999999999999999999997654 37999999986431 1112334567999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCC
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGL 409 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGL 409 (829)
+||+.+....+ ..+.++.++.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++++|||||+||
T Consensus 102 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99998875432 1233444456788999999988777755 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 410 DARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 410 D~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|+.++..+.+.|++++++|+||+++.|+
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~ 201 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 9999999999999998778899887764
No 230
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-33 Score=295.62 Aligned_cols=190 Identities=22% Similarity=0.300 Sum_probs=152.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCee--EEEEEEc
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SGYI--TGNIAIS 301 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g~~--~G~i~i~ 301 (829)
.+.++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ .|.+ .|++.++
T Consensus 10 ~i~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYI-------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEec-------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 48999999987 34679999999999999999999999999999999999643 3432 3777777
Q ss_pred CeecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----chhhhccCC
Q 044554 302 GYPKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT----LRKALVGLP 374 (829)
Q Consensus 302 G~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~----~~~~~vg~~ 374 (829)
|.+... ...++.++|++|++.+++.+||+||+.+...... ..++++..+.++++++.+++.+ ..+.
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----- 149 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS----- 149 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC-----
Confidence 765432 2345679999999998889999999998754321 1223344566889999999864 2333
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.+..||+|||||++|||+|+.+|++++|||||+|||..++..+.+.|+++++ +.||+++.|
T Consensus 150 ~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh 210 (257)
T PRK14246 150 PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSH 210 (257)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEEC
Confidence 2358999999999999999999999999999999999999999999999865 688865544
No 231
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-32 Score=296.36 Aligned_cols=188 Identities=23% Similarity=0.299 Sum_probs=151.9
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEEc
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GYITGNIAIS 301 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~---g~~~G~i~i~ 301 (829)
..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ...+|+|.++
T Consensus 38 ~~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~ 104 (285)
T PRK14254 38 TVIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFR 104 (285)
T ss_pred ceEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence 3589999999882 35799999999999999999999999999999999997531 0246999999
Q ss_pred CeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc----chhhhcc
Q 044554 302 GYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT----LRKALVG 372 (829)
Q Consensus 302 G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~----~~~~~vg 372 (829)
|.++.. ...++.++|++|++.+++. ||+||+.+....+. .+. +..+.++++++.+++.+ ..+..
T Consensus 105 G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-- 177 (285)
T PRK14254 105 GKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS-- 177 (285)
T ss_pred CEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC--
Confidence 987532 2345679999999887775 99999998754331 122 23356788999998853 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 373 LPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 373 ~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++.|
T Consensus 178 ---~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH 237 (285)
T PRK14254 178 ---GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237 (285)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeC
Confidence 4589999999999999999999999999999999999999999999999764 78765544
No 232
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-33 Score=267.30 Aligned_cols=200 Identities=24% Similarity=0.325 Sum_probs=166.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
+++++++++.| +..++|.||+++.+.||.+.++||||||||||+++|.=...+ .+|+..+.|...
T Consensus 2 sirv~~in~~y-------------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p--~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFY-------------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHF 66 (242)
T ss_pred ceEEccccccc-------------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC--CCCeEEeccccc
Confidence 47888888887 456899999999999999999999999999999999875433 257777766532
Q ss_pred C-------c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCC
Q 044554 306 K-------Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGL 376 (829)
Q Consensus 306 ~-------~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~ 376 (829)
+ + ..+|+.+|+|+|+-.++|.+||-|||.-+- +|. ...++++.+.+..++++.+.|.+.+|+. +
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----p 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----P 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccC-----c
Confidence 1 1 245778999999999999999999997542 221 2456777778899999999999999985 3
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEE
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQE 441 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~ 441 (829)
-.|||||+|||+|||||+.+|++|++||||++||++-..++++++|+++..|.|-+++.| .+|++
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~i 219 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCee
Confidence 479999999999999999999999999999999999999999999999999988655443 36888
Q ss_pred EEEcCC
Q 044554 442 IYVGPL 447 (829)
Q Consensus 442 vy~G~~ 447 (829)
+..|+.
T Consensus 220 ve~g~a 225 (242)
T COG4161 220 VEQGDA 225 (242)
T ss_pred Eeecch
Confidence 888875
No 233
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-32 Score=293.12 Aligned_cols=204 Identities=24% Similarity=0.332 Sum_probs=158.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g-~~~G~i~i~G 302 (829)
.++++||++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +. ..+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 478999999872 3569999999999999999999999999999999999642 11 1479999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ...++.++|++|++.+++. |++||+.+..... ...+.+...+.+++.++.+++.+..+.... ....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLD-KSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcc
Confidence 87642 1345679999999888874 9999998764322 112233344667888999888543222222 2346
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEI 442 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~v 442 (829)
.||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++++ ++||+++.| ++|+++
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~ 224 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEII 224 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEE
Confidence 8999999999999999999999999999999999999999999999864 788855433 356666
Q ss_pred EEcCC
Q 044554 443 YVGPL 447 (829)
Q Consensus 443 y~G~~ 447 (829)
+.|+.
T Consensus 225 ~~g~~ 229 (250)
T PRK14266 225 ESGLT 229 (250)
T ss_pred EeCCH
Confidence 66654
No 234
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-33 Score=323.29 Aligned_cols=191 Identities=28% Similarity=0.365 Sum_probs=158.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 488999999882 35799999999999999999999999999999999997654 369999999876
Q ss_pred Ccc----ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQE----TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~~----~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
... ..++.++|++|++.+++.+||+||+.++...+.....+..+..+.++++++.+++.+..++.+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 421 235679999999988999999999998642111111233344466889999999987666654 47999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++.|
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitH 198 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH 198 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999888999866554
No 235
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-33 Score=278.64 Aligned_cols=152 Identities=30% Similarity=0.463 Sum_probs=134.8
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (173)
T cd03230 1 IEVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIK 65 (173)
T ss_pred CEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcc
Confidence 46789998872 24699999999999999999999999999999999997654 3799999998764
Q ss_pred c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
. ...++.++|++|++.+++..|++||+. ||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~ 101 (173)
T cd03230 66 KEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMK 101 (173)
T ss_pred cchHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHH
Confidence 3 234567999999998888899999873 899999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|++++.|+
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 99999999999999999999999999999999999999998778898888764
No 236
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=296.35 Aligned_cols=190 Identities=18% Similarity=0.253 Sum_probs=147.7
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEE
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-YITGNIAI 300 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g-~~~G~i~i 300 (829)
+..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ ++ ..+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34699999999872 3579999999999999999999999999999999999643 21 23699999
Q ss_pred cCeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCC
Q 044554 301 SGYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 301 ~G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
+|.++.. ...++.++|++|+..+++. ||.||+.+....+. ... +..+.+++.++.+++......... ..
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~-~~ 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLK-EK 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhc-CC
Confidence 9987632 2345679999999887764 99999988644321 111 122346677888776421111111 12
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLF 433 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvll 433 (829)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++||++
T Consensus 159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii 215 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIM 215 (274)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEE
Confidence 468999999999999999999999999999999999999999999999975 678744
No 237
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-33 Score=296.23 Aligned_cols=185 Identities=24% Similarity=0.320 Sum_probs=143.6
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+.. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhh
Confidence 468899998731 123699999999999999999999999999999999997654 3799999998754
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHH-----HHHHHHHHHHc--CCccchhhhccCCCC
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTR-----KMFIEEVMELV--ELNTLRKALVGLPGL 376 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~-----~~~v~~vl~~l--~L~~~~~~~vg~~~~ 376 (829)
. ...++.++|++|++.+++ .||+||+.+.... ...++. ...+++.++.+ ++.+..+.. +
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~ 136 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----G 136 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----C
Confidence 2 234567999999988776 7999999875321 111111 11234444444 444444332 4
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++||+++.|
T Consensus 137 ~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh 195 (234)
T cd03251 137 VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAH 195 (234)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEec
Confidence 68999999999999999999999999999999999999999999999864 888866554
No 238
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.8e-33 Score=340.98 Aligned_cols=196 Identities=28% Similarity=0.396 Sum_probs=160.0
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+|+|+. .++.+|+|+|+++++||.+||+||||||||||+|+|+|..++. +|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW--SGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEe
Confidence 46999999999942 2356999999999999999999999999999999999987653 6999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 374 (829)
+.+ ..+++.++||+|++.+++ .|++||+.++. | +.+++ .+.++++..++.+. .|+.+|+.
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 753 356888999999998774 79999998752 1 23332 25566666665543 45667654
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec--------------CcE
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR--------------GGQ 440 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~--------------~G~ 440 (829)
+ .+||||||||++|||+|+++|++|+||||||+||+.++.++.+.|++ .++|++++.|| +|+
T Consensus 613 G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 613 G-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGK 688 (710)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 4 57999999999999999999999999999999999999999999986 47898665553 678
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
++..|+.
T Consensus 689 i~~~G~~ 695 (710)
T TIGR03796 689 VVQRGTH 695 (710)
T ss_pred EEEecCH
Confidence 8877774
No 239
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=293.25 Aligned_cols=191 Identities=18% Similarity=0.215 Sum_probs=152.3
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC--C-eeEEEEEE
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS--G-YITGNIAI 300 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~--g-~~~G~i~i 300 (829)
+..+..+++++.+ +++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++ + ..+|+|.+
T Consensus 6 ~~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 72 (261)
T PRK14263 6 PIVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72 (261)
T ss_pred CceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE
Confidence 3458888888877 346799999999999999999999999999999999997543 1 24799999
Q ss_pred cCeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCC
Q 044554 301 SGYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 301 ~G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
+|.++.. ...++.++|++|++.++ .+|++||+.++...+. .. .+..+.++++++.+++.+..+...+ ..
T Consensus 73 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~i~~~~~-~~ 146 (261)
T PRK14263 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---YK-GDLGDRVKHALQGAALWDEVKDKLK-VS 146 (261)
T ss_pred CCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---ch-HHHHHHHHHHHHHcCCchhhhhhhh-CC
Confidence 9987632 13456799999998777 5999999998764331 11 2234568889999998643322222 13
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFL 434 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvlll 434 (829)
.+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|++++
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~i 204 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALV 204 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEE
Confidence 468999999999999999999999999999999999999999999999864 6787543
No 240
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=293.85 Aligned_cols=190 Identities=25% Similarity=0.320 Sum_probs=168.6
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc------cc-cccceeEEecCCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ------ET-FTCISGYCEQNDI 322 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~------~~-~~~~~~yv~Q~~~ 322 (829)
+...-++|+|++++.||+..|||-||||||||+++|.+...+ ..|+|.++|.++.. .. .++.+++|+|+..
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 335678999999999999999999999999999999998765 37999999998643 12 3467899999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCccee
Q 044554 323 HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFM 402 (829)
Q Consensus 323 ~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~L 402 (829)
++|+.||.||..|+..++ .++++++++++.+.++..||++..+... ++||||+||||.+||||+.+|+||++
T Consensus 117 LlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLM 188 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLM 188 (386)
T ss_pred cccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEe
Confidence 999999999999998776 5788999999999999999999999864 68999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCCC
Q 044554 403 DEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLGE 449 (829)
Q Consensus 403 DEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~~ 449 (829)
|||+|+|||--+.++.+.|.++.++ ++||+++.| ++|+++..|++++
T Consensus 189 DEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~e 251 (386)
T COG4175 189 DEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEE 251 (386)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHH
Confidence 9999999999999999999998765 899965443 5899999999876
No 241
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.9e-33 Score=330.94 Aligned_cols=188 Identities=28% Similarity=0.426 Sum_probs=156.7
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|++|.|+. +++.+|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999999841 234699999999999999999999999999999999997665 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc------hhhhccCCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL------RKALVGLPG 375 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~------~~~~vg~~~ 375 (829)
+.+ ..+++.++||+|++.+++ .|++||+.++. | +.++ +.++++++..++++. .|+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-ccCH----HHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 654 346778999999988775 69999998863 1 2222 346778888888764 35667654
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
...||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++. +++|++++.|+
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr 533 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHR 533 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 35799999999999999999999999999999999999999999999986 48898776654
No 242
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2e-32 Score=291.46 Aligned_cols=189 Identities=26% Similarity=0.299 Sum_probs=150.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee-
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP- 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~- 304 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 488999999882 24689999999999999999999999999999999997654 37999999876
Q ss_pred ----cCcc-------ccccceeEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhh
Q 044554 305 ----KKQE-------TFTCISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKAL 370 (829)
Q Consensus 305 ----~~~~-------~~~~~~~yv~Q~~~--~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~ 370 (829)
+... ..++.++|++|++. +.+..|+.||+.+..... . .....+..+.++++++.+++. +..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3211 12346899999974 445679999987542211 1 011123345678999999996 355554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 371 VGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 371 vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++.|
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH 207 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3589999999999999999999999999999999999999999999998764 889876654
No 243
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=312.35 Aligned_cols=198 Identities=23% Similarity=0.356 Sum_probs=162.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||||+|+. ++.++|+|+|+++++||.+||+|+||||||||+++|+|..++ .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcCh
Confidence 7999999999952 345799999999999999999999999999999999997654 379999999886
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchh-------hhccCCC
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRK-------ALVGLPG 375 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~-------~~vg~~~ 375 (829)
.. ...++.+++++|...++ .-|+||||..+. | +.+++ .+.++++..||++... +.+|+.
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~----~-~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN----P-DASDE----ELWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC----C-CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 43 33567789999986554 579999998763 2 23333 3677888888876544 346654
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcEE
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQE 441 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~~ 441 (829)
.+.||||||||++|||+|++|.++++|||||.|||+.|++++++.+.+.++ |+|++++.| ++||+
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~le~~drIivl~~Gki 550 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLERMDRIIVLDNGKI 550 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccccHhhcCEEEEEECCee
Confidence 468999999999999999999999999999999999999999999998765 899966555 36777
Q ss_pred EEEcCCC
Q 044554 442 IYVGPLG 448 (829)
Q Consensus 442 vy~G~~~ 448 (829)
+..|..+
T Consensus 551 ie~G~~~ 557 (573)
T COG4987 551 IEEGTHA 557 (573)
T ss_pred eecCCHH
Confidence 7777653
No 244
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.9e-33 Score=290.89 Aligned_cols=175 Identities=25% Similarity=0.301 Sum_probs=141.7
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--eeEEEEEEcCeecCcccc-ccceeEEecCCC--CCCCCC
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--YITGNIAISGYPKKQETF-TCISGYCEQNDI--HSPNVT 328 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g--~~~G~i~i~G~~~~~~~~-~~~~~yv~Q~~~--~~~~lT 328 (829)
+|+|+|+++++||+++|+||||||||||+|+|+|..++. ..+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999976531 137999999988653322 357899999974 556789
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc---chhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCC
Q 044554 329 VYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT---LRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEP 405 (829)
Q Consensus 329 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~---~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEP 405 (829)
+.|++.+...... ...++..+.++++++.+++.+ ..+.. ++.||||||||++|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999987643221 112333456889999999973 44443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 406 TSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 406 TsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
|+|||..++..+.+.|++++++ |+||+++.|
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 184 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITH 184 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 9999999999999999999874 888865544
No 245
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.5e-33 Score=338.25 Aligned_cols=197 Identities=25% Similarity=0.390 Sum_probs=159.4
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+|+|+ +++.+|+|+|+++++||.+||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEE
Confidence 4699999999983 224699999999999999999999999999999999998765 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~ 374 (829)
+.+ ..+|+.++||+|++.+++ .|++||+.++.. | +.+++ .++++++..++.+ -.|+.+|+.
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~---~-~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK---E-NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC---C-CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 643 456788999999998775 699999998631 1 23332 2455566555543 346677764
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec--------------CcE
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR--------------GGQ 440 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~--------------~G~ 440 (829)
+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ +|+|++++.|| +|+
T Consensus 609 G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 609 G-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLDHGK 685 (708)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEECCE
Confidence 4 579999999999999999999999999999999999999999999985 47898666553 577
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
++..|+.
T Consensus 686 i~~~G~~ 692 (708)
T TIGR01193 686 IIEQGSH 692 (708)
T ss_pred EEEECCH
Confidence 7777664
No 246
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.4e-33 Score=282.46 Aligned_cols=166 Identities=47% Similarity=0.779 Sum_probs=142.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCeeEEEEEEcCe
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGYITGNIAISGY 303 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~--~~g~~~G~i~i~G~ 303 (829)
.++++|+++.+.... ...++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCE
Confidence 589999999984210 011357999999999999999999999999999999999976 54 4799999999
Q ss_pred ecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 304 PKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 304 ~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754345677999999998888999999997642100 599999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|||++|||+|+.+|++++|||||+|||..++..+.+.|++++++|+|++++.|+
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 170 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 999999999999999999999999999999999999999998779999998875
No 247
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.8e-33 Score=335.68 Aligned_cols=198 Identities=27% Similarity=0.436 Sum_probs=161.1
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+|+|+. +++.+|+|+|++++|||.+||+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999999941 235699999999999999999999999999999999998765 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~ 374 (829)
+++ ..+++.++||+|++.+++ .|++||+.++. | +.+++ .++++++..++.+ -.|+.+|+.
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCCHH----HHHHHHHHcChHHHHHhCcccccceecCC
Confidence 754 356788999999998776 69999998752 1 23332 2455666665543 346677765
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcE
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQ 440 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~ 440 (829)
+ ..||||||||++|||+|+++|++++||||||+||+.++.++.+.|+++.+ ++|++++.| ++|+
T Consensus 599 G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 599 G-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSLLDLVDRIIVMDNGR 676 (694)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 4 57999999999999999999999999999999999999999999999864 788855544 3678
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
++..|+.
T Consensus 677 i~e~G~~ 683 (694)
T TIGR03375 677 IVADGPK 683 (694)
T ss_pred EEeeCCH
Confidence 8777764
No 248
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=294.70 Aligned_cols=190 Identities=20% Similarity=0.286 Sum_probs=148.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g-~~~G~i~i~G 302 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|... +. ..+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 489999999882 3579999999999999999999999999999999999643 11 1469999999
Q ss_pred eecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 303 YPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 303 ~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
.++.. ...++.++|++|++.+++ .||+||+.+....+. .. .+..+.++++++.+++.+..+.... ..+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 87631 234567999999988777 599999988654321 11 1223456777888777432111111 1245
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLL 435 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll 435 (829)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++.
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vt 207 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVT 207 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 8999999999999999999999999999999999999999999999976 57885543
No 249
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-32 Score=331.69 Aligned_cols=202 Identities=25% Similarity=0.392 Sum_probs=166.2
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++++||+|.|+. ..+.++|+|+|+++++|+.+||+|||||||||.+.+|-...++ ..|.|.+||.
T Consensus 985 ~G~I~~~~V~F~YPs----------RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp--~~G~V~IDg~ 1052 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPT----------RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP--DAGKVKIDGV 1052 (1228)
T ss_pred eeEEEEeeeEeeCCC----------CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCc
Confidence 346999999999963 2457899999999999999999999999999999999987765 4799999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHH-----HHHHHHHHcCCccchhhhccCCC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKM-----FIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~-----~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
++++ +.+|+.+|.|.|+|.+|. .|+|||+.|+.. +.+.++..+ .+.+.+ .+|.+-.||.+|+.+
T Consensus 1053 dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~~-----~vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1053 DIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGSE-----EVSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGERG 1124 (1228)
T ss_pred ccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccCC-----CCCHHHHHHHHHHhhhHHHH--hcCcCcccCccCccc
Confidence 8865 346889999999999875 799999999821 234433221 112222 356777899999876
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcEE
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQE 441 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~~ 441 (829)
. +||||||||++||||+++||+||+|||.||+||+++.+.+.+.|.+.. .|||.+++.| ++|++
T Consensus 1125 ~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqnaD~I~Vi~~G~V 1202 (1228)
T KOG0055|consen 1125 V-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVIAVLKNGKV 1202 (1228)
T ss_pred C-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhcCCEEEEEECCEE
Confidence 4 799999999999999999999999999999999999999999999965 5787744433 47999
Q ss_pred EEEcCC
Q 044554 442 IYVGPL 447 (829)
Q Consensus 442 vy~G~~ 447 (829)
+..|+-
T Consensus 1203 vE~GtH 1208 (1228)
T KOG0055|consen 1203 VEQGTH 1208 (1228)
T ss_pred EecccH
Confidence 999973
No 250
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-33 Score=292.45 Aligned_cols=186 Identities=24% Similarity=0.395 Sum_probs=145.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 478999999872 124599999999999999999999999999999999997654 369999999876
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhc-c-----CCCC
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALV-G-----LPGL 376 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~v-g-----~~~~ 376 (829)
.. ...++.++|++|++.+++. ||+||+.+... .... ..+++.++.+++.+..+... | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 42 2345679999999877765 99999987531 1111 12344455555544333221 0 1124
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+||+++.|
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh 196 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAH 196 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEec
Confidence 6899999999999999999999999999999999999999999999986 5889877654
No 251
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.5e-33 Score=338.88 Aligned_cols=197 Identities=26% Similarity=0.417 Sum_probs=157.5
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+|+|+. .+++.+|+|+|++++|||.+||+||||||||||+|+|+|..++. +|+|.+||.+
T Consensus 477 ~~I~~~nVsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPN----------RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT--GGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCC----------CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCEE
Confidence 46999999999942 12357999999999999999999999999999999999977653 6999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 374 (829)
+++ ..+++.++||+|++.+++ .|++|||.++. + +.++ +.++++++..++.+. .|+.+|+.
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 754 346778999999988775 79999999863 1 2222 235666777666543 45667654
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec--------------CcE
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR--------------GGQ 440 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~--------------~G~ 440 (829)
+ ..||||||||++|||+|+++|+|++||||||+||+.+++.+.+ .. ..+++|++++.|| +|+
T Consensus 615 G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~IivL~~G~ 690 (711)
T TIGR00958 615 G-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQILVLKKGS 690 (711)
T ss_pred C-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEEEEECCE
Confidence 3 5799999999999999999999999999999999999999988 22 2357898665553 577
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
++..|+.
T Consensus 691 ive~Gt~ 697 (711)
T TIGR00958 691 VVEMGTH 697 (711)
T ss_pred EEEeeCH
Confidence 7777764
No 252
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=7.6e-33 Score=288.33 Aligned_cols=188 Identities=26% Similarity=0.385 Sum_probs=151.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+.. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEh
Confidence 3789999998731 124699999999999999999999999999999999997654 369999999875
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhcc------CCCC
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVG------LPGL 376 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg------~~~~ 376 (829)
.. ...++.++|++|++.+++ .||.||+.+... ... .+.++++++.+++.+..+.... ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 123567899999988776 699999976421 111 1235678888888877665431 1123
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +||+++.|+
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~ 198 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHR 198 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCC
Confidence 589999999999999999999999999999999999999999999998764 788888764
No 253
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=310.20 Aligned_cols=212 Identities=24% Similarity=0.333 Sum_probs=170.5
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
.-++++||+..|..+.... ....+...+++||||++++||++||+|+||||||||.|+|+|..++ ..|+|.++|.+
T Consensus 279 ~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~ 354 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQD 354 (539)
T ss_pred ceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcc
Confidence 3588999999997543111 0112457899999999999999999999999999999999998765 36999999976
Q ss_pred c--Cc---cccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCC
Q 044554 305 K--KQ---ETFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGL 376 (829)
Q Consensus 305 ~--~~---~~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~ 376 (829)
. +. ...++.+-+|+||+ .+.|.+||++++.-......+. ...+++++++++++..+|.. ..++ .+
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~r-----yP 427 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDR-----YP 427 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhc-----Cc
Confidence 2 11 23455677888876 5789999999998776544332 25667778999999999984 3333 35
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcE
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQ 440 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~ 440 (829)
++||||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.+++.| ++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 799999999999999999999999999999999999999999999999876 888854333 4799
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
+|..||.
T Consensus 508 iVE~G~~ 514 (539)
T COG1123 508 IVEEGPT 514 (539)
T ss_pred EEEeCCH
Confidence 9999975
No 254
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-32 Score=325.48 Aligned_cols=213 Identities=21% Similarity=0.232 Sum_probs=167.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.|...... .....+.+.+|+|||+++++||+++|+|+||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 58999999998421000 00000135799999999999999999999999999999999997654 369999999876
Q ss_pred Ccc------ccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCC
Q 044554 306 KQE------TFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGL 376 (829)
Q Consensus 306 ~~~------~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~ 376 (829)
... .+++.++||+|++ .+++.+||.|++.+....+. ..+.++..++++++++.+||. +..++.+
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----- 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP----- 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----
Confidence 421 2356799999996 57889999999987654321 112334456788999999995 4566543
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcE
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQ 440 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~ 440 (829)
++|||||||||+|||+|+.+|++|+|||||+|||..++.+++++|++++++ |.|||++.| ++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 589999999999999999999999999999999999999999999999875 888854332 4799
Q ss_pred EEEEcCCCC
Q 044554 441 EIYVGPLGE 449 (829)
Q Consensus 441 ~vy~G~~~~ 449 (829)
++..|++.+
T Consensus 542 iv~~g~~~~ 550 (623)
T PRK10261 542 IVEIGPRRA 550 (623)
T ss_pred EEEecCHHH
Confidence 999998643
No 255
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-32 Score=294.04 Aligned_cols=195 Identities=25% Similarity=0.308 Sum_probs=151.9
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEEc
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GYITGNIAIS 301 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~---g~~~G~i~i~ 301 (829)
..++++|+++.+. ++.+|+|+|+++++||+++|+|+|||||||||++|+|...+ ...+|+|.++
T Consensus 44 ~~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~ 110 (305)
T PRK14264 44 AKLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELD 110 (305)
T ss_pred ceEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3589999999882 35699999999999999999999999999999999997531 1247999999
Q ss_pred CeecCc-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCC---------CCC-HHHHHHHHHHHHHHcCCccc
Q 044554 302 GYPKKQ-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPP---------EVD-SQTRKMFIEEVMELVELNTL 366 (829)
Q Consensus 302 G~~~~~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~---------~~~-~~~~~~~v~~vl~~l~L~~~ 366 (829)
|.++.. ...++.++|++|+..+++ .||+||+.+....+... ..+ .+...+.++++++.+++.+.
T Consensus 111 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 111 GQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred CEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 987642 123567999999988777 59999999875422100 011 12234567888999988532
Q ss_pred hhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEE
Q 044554 367 RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLL 435 (829)
Q Consensus 367 ~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll 435 (829)
.+.... ..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++.
T Consensus 190 ~~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivt 256 (305)
T PRK14264 190 VNDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVT 256 (305)
T ss_pred hhHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEE
Confidence 222222 124689999999999999999999999999999999999999999999999774 7875443
No 256
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.8e-32 Score=320.80 Aligned_cols=198 Identities=21% Similarity=0.282 Sum_probs=159.6
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCeeEEEEEEcC--
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGYITGNIAISG-- 302 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~--~~g~~~G~i~i~G-- 302 (829)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||||+|+|.. ++ .+|+|.++|
T Consensus 1 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p--~~G~i~~~~~~ 65 (520)
T TIGR03269 1 IEVKNLTKKF-------------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIYHVAL 65 (520)
T ss_pred CEEEEEEEEE-------------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC--CceEEEEeccc
Confidence 4678999987 2357999999999999999999999999999999999974 33 368998872
Q ss_pred ---------------------eecC----------c---cccccceeEEecC-CCCCCCCCHHHHHHHhhhhcCCCCCCH
Q 044554 303 ---------------------YPKK----------Q---ETFTCISGYCEQN-DIHSPNVTVYESLLYSAWLRLPPEVDS 347 (829)
Q Consensus 303 ---------------------~~~~----------~---~~~~~~~~yv~Q~-~~~~~~lTV~E~l~f~a~lr~~~~~~~ 347 (829)
.++. . ...++.++|++|+ +.+++.+||+||+.+..... ..+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~ 142 (520)
T TIGR03269 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEG 142 (520)
T ss_pred cccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCH
Confidence 2110 0 1134568999997 67788899999999865432 1233
Q ss_pred HHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-
Q 044554 348 QTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD- 426 (829)
Q Consensus 348 ~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~- 426 (829)
++.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 143 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 217 (520)
T TIGR03269 143 KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA 217 (520)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 444567899999999988777654 58999999999999999999999999999999999999999999999975
Q ss_pred CCCeEEEEEe---------------cCcEEEEEcCC
Q 044554 427 TGRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 427 ~g~tvllll~---------------~~G~~vy~G~~ 447 (829)
.|+|||++.| ++|++++.|+.
T Consensus 218 ~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 218 SGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTP 253 (520)
T ss_pred cCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCH
Confidence 4889855433 36888888775
No 257
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-32 Score=277.63 Aligned_cols=154 Identities=29% Similarity=0.427 Sum_probs=136.0
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 46789998872 35699999999999999999999999999999999997654 3799999998764
Q ss_pred c-----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 307 Q-----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 307 ~-----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
. ...++.++|++|++.+++.+|++||+.+. |||
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~ 103 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSG 103 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCH
Confidence 2 23456799999999888889999987542 999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|++++.|+
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 160 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999887 8899998864
No 258
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=5.9e-33 Score=292.73 Aligned_cols=186 Identities=26% Similarity=0.424 Sum_probs=141.5
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 68 (238)
T cd03249 1 IEFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIR 68 (238)
T ss_pred CeEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehh
Confidence 468899988731 1224699999999999999999999999999999999997654 3799999998753
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhh-------ccCCCC
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKAL-------VGLPGL 376 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~-------vg~~~~ 376 (829)
. ...++.++|++|++.+++ .||+||+.+....+ ..+ ..++.++..++.+..+.+ .. ..+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 137 (238)
T cd03249 69 DLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERG 137 (238)
T ss_pred hcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeec-cCC
Confidence 2 123456999999987775 69999998753211 111 122333333333222211 11 124
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+||+++.|
T Consensus 138 ~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh 196 (238)
T cd03249 138 SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAH 196 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999987 7889866554
No 259
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=9.9e-33 Score=323.84 Aligned_cols=188 Identities=30% Similarity=0.468 Sum_probs=156.5
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+|+|+. +++.+|+|+|++++|||.+||+||||||||||+|+|+|..++. +|+|.+||.+
T Consensus 319 ~~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I~~~g~~ 385 (529)
T TIGR02857 319 PSLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVP 385 (529)
T ss_pred CeEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEe
Confidence 36999999999841 2346999999999999999999999999999999999977653 6999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 374 (829)
..+ ..+++.++||+|++.+++ .|++||+.++. + +.++ +.++++++..++.+. .|+.+|..
T Consensus 386 i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~ 455 (529)
T TIGR02857 386 LADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR----P-DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEG 455 (529)
T ss_pred hhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC----C-CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccc
Confidence 653 356778999999998775 69999998753 1 1222 235666666666543 46677664
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+ ..||||||||++|||+|+++|++++||||||+||+.+++.+.+.++++. +++|++++.|+
T Consensus 456 g-~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~ 516 (529)
T TIGR02857 456 G-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHR 516 (529)
T ss_pred c-ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 3 5799999999999999999999999999999999999999999999875 58999999986
No 260
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.8e-33 Score=326.11 Aligned_cols=189 Identities=26% Similarity=0.387 Sum_probs=150.6
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|++++|+. +++.+|+|+|++++|||.++|+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 315 ~~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEe
Confidence 46999999999841 235799999999999999999999999999999999998665 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~ 374 (829)
... ..+++.++||+|++.+++ .|++||+.+.. + +.++++ +++.++..++++ -.|+.+|..
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~----~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 451 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFP-GTVAENIARFG----E-NADPEK----IIEAAKLAGVHELILRLPDGYDTVIGPG 451 (544)
T ss_pred hhhCCHHHHhhheEEecCCccccc-ccHHHHHhccC----C-CCCHHH----HHHHHHHhChHHHHHhCccccccccCCC
Confidence 653 345678999999998876 49999998542 1 123222 233333333322 235556654
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
...||||||||++|||+|+++|++++|||||||||+.++..+.+.|+++.++|+|++++.|+
T Consensus 452 -g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~ 513 (544)
T TIGR01842 452 -GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513 (544)
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 35799999999999999999999999999999999999999999999987678998766553
No 261
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3e-32 Score=288.99 Aligned_cols=192 Identities=27% Similarity=0.332 Sum_probs=150.7
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--CCCeeEEEEEEcCee
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK--TSGYITGNIAISGYP 304 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~--~~g~~~G~i~i~G~~ 304 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.++|.+
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~G~i~~~g~~ 66 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV--TGGTVEFKGKD 66 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC--CceEEEECCCc
Confidence 67899999872 356999999999999999999999999999999999973 33 47999999987
Q ss_pred cCcc---c-cccceeEEecCCCCCCCCCHHHHHHHhhh-hcC--CC-CCCHHHHHHHHHHHHHHcCCc-cchhhhccCCC
Q 044554 305 KKQE---T-FTCISGYCEQNDIHSPNVTVYESLLYSAW-LRL--PP-EVDSQTRKMFIEEVMELVELN-TLRKALVGLPG 375 (829)
Q Consensus 305 ~~~~---~-~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~-lr~--~~-~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~ 375 (829)
.... . .++.++|++|++.+++.+|+.+++.+... ++. .. ..+..+..+.+++.++.+++. +..++.+.
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (248)
T PRK09580 67 LLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN--- 143 (248)
T ss_pred cccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC---
Confidence 6421 1 22468999999988888888777654321 110 00 012222345678889999984 44444321
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+.||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|++++++|+||+++.|+
T Consensus 144 -~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~ 204 (248)
T PRK09580 144 -VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHY 204 (248)
T ss_pred -CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3699999999999999999999999999999999999999999999998778999887763
No 262
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-32 Score=288.45 Aligned_cols=194 Identities=23% Similarity=0.293 Sum_probs=150.5
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CC-eeEEEEEE
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SG-YITGNIAI 300 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g-~~~G~i~i 300 (829)
+..++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ ++ ..+|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 34589999999882 3579999999999999999999999999999999999754 22 14799999
Q ss_pred cCeecC---c----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCC-HHHHHHHHHHHHHHcCCccchhhhcc
Q 044554 301 SGYPKK---Q----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVD-SQTRKMFIEEVMELVELNTLRKALVG 372 (829)
Q Consensus 301 ~G~~~~---~----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~-~~~~~~~v~~vl~~l~L~~~~~~~vg 372 (829)
+|.+.. . ...++.++|++|++.+++. ||+||+.+...... .+ .+...+.+++.++.+++.+.......
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG---VKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC---CChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 987642 1 1345678999999888875 99999987653221 11 12223457778888877421111111
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 373 LPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 373 ~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.....||||||||++|||+|+.+|++++|||||+|||..++..+.+.|+++++ ++||+++.|
T Consensus 157 -~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth 218 (265)
T PRK14252 157 -DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTH 218 (265)
T ss_pred -CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEec
Confidence 12358999999999999999999999999999999999999999999999975 688866544
No 263
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-32 Score=290.39 Aligned_cols=185 Identities=25% Similarity=0.389 Sum_probs=143.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhh
Confidence 46889998872 124699999999999999999999999999999999997654 3799999998764
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhh-------ccCCCC
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKAL-------VGLPGL 376 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~-------vg~~~~ 376 (829)
. ..+++.++|++|+..+++ .||+||+.+... ..+.++ +++.++..++.+..+.. .. ..+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~ 135 (236)
T cd03253 67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERG 135 (236)
T ss_pred hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCC
Confidence 2 234567999999987775 799999987532 111111 23333444443322211 11 124
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ |+||+++.|+
T Consensus 136 ~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~ 195 (236)
T cd03253 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHR 195 (236)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999977 8998777653
No 264
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=7.5e-33 Score=289.66 Aligned_cols=194 Identities=24% Similarity=0.348 Sum_probs=151.3
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|+++.+.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 10 ~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~ 77 (226)
T cd03248 10 GIVKFQNVTFAYPT----------RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKP 77 (226)
T ss_pred ceEEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCc
Confidence 35899999999841 1124699999999999999999999999999999999997654 36999999987
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHc--CCccchhhhccCCCCCCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELV--ELNTLRKALVGLPGLNGL 379 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l--~L~~~~~~~vg~~~~~~L 379 (829)
+.. ...++.++|++|++.+++ .||+||+.+...........+......+++.++.+ |+.+..+.. ++.|
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~L 151 (226)
T cd03248 78 ISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQL 151 (226)
T ss_pred hHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcC
Confidence 532 223567999999987765 69999998754211000000011112356777877 666555543 3589
Q ss_pred CHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 380 STEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 380 SgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|++++.|+
T Consensus 152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 208 (226)
T cd03248 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHR 208 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECC
Confidence 99999999999999999999999999999999999999999999865 6888888764
No 265
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.6e-32 Score=320.04 Aligned_cols=200 Identities=24% Similarity=0.329 Sum_probs=157.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|....+. .....+++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ .+|+|.++|.++
T Consensus 275 ~l~~~~l~~~~~~~~~~--~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i 349 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGI--LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPL 349 (529)
T ss_pred cccccCcEEEeecCccc--cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEc
Confidence 48999999998411000 0000023579999999999999999999999999999999999763 269999999876
Q ss_pred Ccc------ccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCC
Q 044554 306 KQE------TFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGL 376 (829)
Q Consensus 306 ~~~------~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~ 376 (829)
... .+++.++|++|+. .+++.+||+||+.++...+.. ..+..+.++.++++++.+++. +..+..+
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 423 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP----- 423 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----
Confidence 421 1245689999996 477889999999987543211 123334456788999999997 4566543
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++.|
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH 484 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISH 484 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeC
Confidence 589999999999999999999999999999999999999999999999875 889866554
No 266
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-32 Score=287.79 Aligned_cols=203 Identities=20% Similarity=0.304 Sum_probs=159.1
Q ss_pred ceEEEEeeEEEEeCCc----cccC--CCC-CCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEE
Q 044554 225 HSITFDDITYSVDMPQ----EMIN--PGV-SEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGN 297 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~----~~~~--~~~-~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~ 297 (829)
+.+.++||+.+++... ..++ .+. ...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceE
Confidence 4688999988886531 1110 111 22456799999999999999999999999999999999997654 3699
Q ss_pred EEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 298 IAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 298 i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
|.++|. ++++.|+..+.+.+|++||+.+..... ..+.++..+.++++++.+++.+..+..+ +
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----K 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----c
Confidence 999985 245677776777899999998764432 2233444456778888889887766643 5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEI 442 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~v 442 (829)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|++++.| ++|+++
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999999999999877889855443 356776
Q ss_pred EEcCC
Q 044554 443 YVGPL 447 (829)
Q Consensus 443 y~G~~ 447 (829)
..|+.
T Consensus 223 ~~g~~ 227 (264)
T PRK13546 223 DYGEL 227 (264)
T ss_pred EeCCH
Confidence 66664
No 267
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.8e-32 Score=323.91 Aligned_cols=187 Identities=26% Similarity=0.381 Sum_probs=153.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|++|.|+ +++.+|+|+|++++|||.++|+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~y~------------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYD------------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeC------------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 3699999999984 124599999999999999999999999999999999998765 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~ 374 (829)
..+ ..+++.++||+|++.+++ .|++||+.++. | +.++++ ++++++..++.+ -.|+.+|..
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~~ 468 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGER 468 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcCC
Confidence 754 356778999999988775 79999998752 1 223322 455555555543 345666653
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
.+.||||||||++|||+|+++|++++||||||+||+.++..+.+.|+++. +++|++++.||
T Consensus 469 -g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr 529 (588)
T PRK13657 469 -GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHR 529 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEec
Confidence 35799999999999999999999999999999999999999999999875 47999988876
No 268
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.5e-32 Score=316.75 Aligned_cols=207 Identities=20% Similarity=0.268 Sum_probs=164.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GYITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~---g~~~G~i~i~G 302 (829)
.++++|++++|... .+.+.+|+|+|+++++||++||+||||||||||+|+|+|..++ +..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 48999999998310 1135799999999999999999999999999999999997543 12479999999
Q ss_pred eecCcc------cc-ccceeEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc---hhhh
Q 044554 303 YPKKQE------TF-TCISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL---RKAL 370 (829)
Q Consensus 303 ~~~~~~------~~-~~~~~yv~Q~~~--~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~---~~~~ 370 (829)
.++... .. ++.+||++|++. +.+.+|++|++.+..... ...+.++..++++++++.++|.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 886421 11 246899999964 567789999987653321 123344456678999999999763 3554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe-------------
Q 044554 371 VGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK------------- 436 (829)
Q Consensus 371 vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~------------- 436 (829)
+ +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++.|
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~ 228 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVA 228 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEE
Confidence 3 589999999999999999999999999999999999999999999999875 888854333
Q ss_pred --cCcEEEEEcCCC
Q 044554 437 --RGGQEIYVGPLG 448 (829)
Q Consensus 437 --~~G~~vy~G~~~ 448 (829)
++|++++.|++.
T Consensus 229 ~l~~G~i~~~g~~~ 242 (529)
T PRK15134 229 VMQNGRCVEQNRAA 242 (529)
T ss_pred EEECCEEEEeCCHH
Confidence 468988888764
No 269
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=5.4e-32 Score=287.35 Aligned_cols=182 Identities=24% Similarity=0.347 Sum_probs=150.3
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc---cccccceeEEecCCCCCCCCCHH
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ---ETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
+|+|+|+++++||+++|+||||||||||+++|+|..+. +|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 79999999999999999999999999999999997642 6999999987643 12345689999998888889999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhh-------CCCcceec
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVA-------NPSIIFMD 403 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~-------~p~iL~LD 403 (829)
||+.+.... ..+.++..+.++++++.+++.+..++.+ +.||||||||++||++|+. +|++++||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999876321 1222333456889999999987766654 5899999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcCC
Q 044554 404 EPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 404 EPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~~ 447 (829)
|||+|||+.++..+.+.|++++++|+|||++.| ++|+++..|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999877899855443 35777777664
No 270
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.3e-32 Score=283.75 Aligned_cols=187 Identities=24% Similarity=0.315 Sum_probs=147.8
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEh
Confidence 4789999998831 234699999999999999999999999999999999997654 369999999876
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhh-cc-----CCCC
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKAL-VG-----LPGL 376 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~-vg-----~~~~ 376 (829)
.. ..+++.++|++|++.+++ .||+||+.+... ... +.+.+.++.+++.+..++. .| ...+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 137 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGG 137 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 42 234567999999988665 699999964321 111 2355667777776554321 00 1134
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+.||+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.||+++.|+
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 197 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHR 197 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCC
Confidence 68999999999999999999999999999999999999999999999864 6788776654
No 271
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-32 Score=322.66 Aligned_cols=205 Identities=18% Similarity=0.256 Sum_probs=163.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|... .+++.+|+|||+++++||++||+||||||||||+|+|+|...+ .+|+|.++|...
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEe
Confidence 48999999998421 1235799999999999999999999999999999999997654 258888887532
Q ss_pred C-------------cc---cc-ccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-
Q 044554 306 K-------------QE---TF-TCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT- 365 (829)
Q Consensus 306 ~-------------~~---~~-~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~- 365 (829)
. .. .. ++.+|||+|++ .+++.+||+||+.++.+... ..+.++.+++++++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 00 11 24689999997 57888999999998765421 2344445567899999999964
Q ss_pred --chhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe------
Q 044554 366 --LRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK------ 436 (829)
Q Consensus 366 --~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~------ 436 (829)
..+.. +..|||||||||+||+||+.+|++|+|||||+|||+.++.++.++|++++++ |.|||++.|
T Consensus 159 ~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~ 233 (623)
T PRK10261 159 QTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVA 233 (623)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 34443 3589999999999999999999999999999999999999999999999865 888854332
Q ss_pred ---------cCcEEEEEcCCC
Q 044554 437 ---------RGGQEIYVGPLG 448 (829)
Q Consensus 437 ---------~~G~~vy~G~~~ 448 (829)
++|+++..|++.
T Consensus 234 ~~adri~vl~~G~i~~~g~~~ 254 (623)
T PRK10261 234 EIADRVLVMYQGEAVETGSVE 254 (623)
T ss_pred HhCCEEEEeeCCeecccCCHH
Confidence 468998888764
No 272
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-32 Score=316.95 Aligned_cols=195 Identities=22% Similarity=0.323 Sum_probs=155.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+.. .+++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ ..+|+|.++|.++
T Consensus 259 ~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~ 327 (506)
T PRK13549 259 ILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPV 327 (506)
T ss_pred eEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEEC
Confidence 4899999987621 0234699999999999999999999999999999999997542 1269999999876
Q ss_pred Ccc----ccccceeEEecCC---CCCCCCCHHHHHHHhhhhcCC--CCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCC
Q 044554 306 KQE----TFTCISGYCEQND---IHSPNVTVYESLLYSAWLRLP--PEVDSQTRKMFIEEVMELVELN-TLRKALVGLPG 375 (829)
Q Consensus 306 ~~~----~~~~~~~yv~Q~~---~~~~~lTV~E~l~f~a~lr~~--~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~ 375 (829)
... ..++.++|++|+. .+++.+||.||+.+....... ...+.++.++.++++++.+++. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 403 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI---- 403 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc----
Confidence 421 1245689999985 467889999999875321111 0112333446688999999996 4666654
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++.|
T Consensus 404 -~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sH 463 (506)
T PRK13549 404 -ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISS 463 (506)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECC
Confidence 479999999999999999999999999999999999999999999999888999966544
No 273
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.4e-32 Score=304.26 Aligned_cols=209 Identities=22% Similarity=0.291 Sum_probs=172.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--eeEEEEEEcCe
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--YITGNIAISGY 303 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g--~~~G~i~i~G~ 303 (829)
-++++||+.++... .+...+++||||++.+||++||+|+|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 58999999998642 23367999999999999999999999999999999999965543 34699999998
Q ss_pred ecCc---c----ccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCC
Q 044554 304 PKKQ---E----TFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLP 374 (829)
Q Consensus 304 ~~~~---~----~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~ 374 (829)
++.. . ...+.++|++|++ .+.|-+||.+-+.-..+++.. .+.++.++++.++++.++|.+-... +.
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 6422 1 1235799999996 456779999988876665542 3367777889999999999887665 33
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEE----------------EEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVL----------------FLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvl----------------lll~~ 437 (829)
.+++||||||||+.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.+++ ++| +
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm-~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVM-Y 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEE-E
Confidence 4689999999999999999999999999999999999999999999999985 488884 344 4
Q ss_pred CcEEEEEcCCCC
Q 044554 438 GGQEIYVGPLGE 449 (829)
Q Consensus 438 ~G~~vy~G~~~~ 449 (829)
+|+++..|++++
T Consensus 230 ~G~iVE~G~~~~ 241 (539)
T COG1123 230 KGEIVETGPTEE 241 (539)
T ss_pred CCEEEEecCHHH
Confidence 799999999743
No 274
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.8e-32 Score=293.02 Aligned_cols=197 Identities=21% Similarity=0.272 Sum_probs=158.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+.. +...+|+|+|++|++||+++|+|+||||||||+++|+|..+. +|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~---~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT---EGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCC---CcEEEECCEEh
Confidence 4789999999841 234699999999999999999999999999999999997642 69999999886
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccC------CCC
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGL------PGL 376 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~------~~~ 376 (829)
.. ...++.++|++|++.+++ .||+||+.... ..+. +.+.+.++.+||.+..+...+. .+.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 234677999999998887 59999996321 1122 2356778888998766654431 123
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcEEE
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQEI 442 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~~v 442 (829)
+.||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++. +++|||++.| ++|+++
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~ 215 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLECQRFLVIEENKVR 215 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHhCCEEEEecCCeEe
Confidence 4699999999999999999999999999999999999999999999875 4788855433 467777
Q ss_pred EEcCCC
Q 044554 443 YVGPLG 448 (829)
Q Consensus 443 y~G~~~ 448 (829)
++|++.
T Consensus 216 ~~g~~~ 221 (275)
T cd03289 216 QYDSIQ 221 (275)
T ss_pred ecCCHH
Confidence 777763
No 275
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.6e-32 Score=316.73 Aligned_cols=192 Identities=21% Similarity=0.309 Sum_probs=153.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEc-Cee
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAIS-GYP 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~-G~~ 304 (829)
.++++|+++.|... ..+++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++ |.+
T Consensus 279 ~l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~ 348 (520)
T TIGR03269 279 IIKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDE 348 (520)
T ss_pred eEEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCc
Confidence 59999999988310 01235799999999999999999999999999999999997654 36999996 532
Q ss_pred ---cCc------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-----chhhh
Q 044554 305 ---KKQ------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-----LRKAL 370 (829)
Q Consensus 305 ---~~~------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-----~~~~~ 370 (829)
... ...++.++|++|++.+++.+||+||+.+...+. .+.++.++.++++++.++|.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 111 122456899999988889999999998764321 223333456889999999975 34554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 371 VGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 371 vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
+ ..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |.|||++.|
T Consensus 425 ~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH 486 (520)
T TIGR03269 425 P-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSH 486 (520)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC
Confidence 3 589999999999999999999999999999999999999999999999765 889865544
No 276
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.3e-32 Score=273.29 Aligned_cols=152 Identities=27% Similarity=0.433 Sum_probs=132.7
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|++++++. +++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcc
Confidence 467899988731 124699999999999999999999999999999999997654 3699999998764
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
. ..+++.++|++|++.+++ .||+||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~ 101 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQ 101 (173)
T ss_pred cCCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHH
Confidence 3 234567999999987776 4999886 89999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|++++.|+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 155 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 999999999999999999999999999999999999999998779999998864
No 277
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-32 Score=317.65 Aligned_cols=190 Identities=21% Similarity=0.324 Sum_probs=153.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+ + .+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 265 ~l~~~~l~~~~-------------~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~ 327 (510)
T PRK09700 265 VFEVRNVTSRD-------------R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDI 327 (510)
T ss_pred EEEEeCccccC-------------C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEEC
Confidence 48888888642 1 389999999999999999999999999999999997654 369999999876
Q ss_pred Ccc----ccccceeEEecC---CCCCCCCCHHHHHHHhhhhc---CCC--C-CCHHHHHHHHHHHHHHcCCc-cchhhhc
Q 044554 306 KQE----TFTCISGYCEQN---DIHSPNVTVYESLLYSAWLR---LPP--E-VDSQTRKMFIEEVMELVELN-TLRKALV 371 (829)
Q Consensus 306 ~~~----~~~~~~~yv~Q~---~~~~~~lTV~E~l~f~a~lr---~~~--~-~~~~~~~~~v~~vl~~l~L~-~~~~~~v 371 (829)
... ..++.++|++|+ ..+++.+||+||+.+....+ ... . .+.++.++.++++++.+++. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 421 234568999998 45788999999998753211 000 0 11222335678999999996 6677665
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 372 GLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 372 g~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++|.|||++.|+
T Consensus 408 -----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd 468 (510)
T PRK09700 408 -----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE 468 (510)
T ss_pred -----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4799999999999999999999999999999999999999999999998889999776553
No 278
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.7e-32 Score=287.01 Aligned_cols=174 Identities=26% Similarity=0.368 Sum_probs=146.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc--
Confidence 488999999882 34699999999999999999999999999999999997654 3699998862
Q ss_pred CccccccceeEEecCCCCCCC--CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPN--VTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~--lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
+.++|++|++.+++. .|++|++.+.. ... .+.++++++.+++.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999999877665 47888775421 111 134678999999988777654 5799999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+||+++.|+
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 99999999999999999999999999999999999999999876 8899887764
No 279
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.98 E-value=4e-32 Score=321.58 Aligned_cols=189 Identities=25% Similarity=0.383 Sum_probs=155.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+|+|+. .++.+|+|+|+++++||.++|+|+||||||||+|+|+|..++. +|+|.+||.+
T Consensus 329 ~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~--~G~I~i~g~~ 395 (571)
T TIGR02203 329 GDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD--SGQILLDGHD 395 (571)
T ss_pred CeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEe
Confidence 46999999999841 2346999999999999999999999999999999999987653 6999999988
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 374 (829)
.++ ..+++.++|++|++.++ +.|++|||.++. +++.++ +.++++++..++.+. .|+.+|+.
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLF-NDTIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred HHhcCHHHHHhhceEEccCcccc-cccHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 643 35677899999998766 569999998763 112333 236677777776543 35566654
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+ +.||||||||++|||+++++|++++||||||+||..+++.+++.|+++. +++|++++.|+
T Consensus 467 g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~ 527 (571)
T TIGR02203 467 G-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHR 527 (571)
T ss_pred C-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehh
Confidence 3 5799999999999999999999999999999999999999999999875 47999988875
No 280
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.98 E-value=7e-32 Score=273.17 Aligned_cols=153 Identities=25% Similarity=0.442 Sum_probs=133.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+ +|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 37888888642 89999999999999999999999999999999997654 369999999876
Q ss_pred Ccc----ccccceeEEecCC---CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCC
Q 044554 306 KQE----TFTCISGYCEQND---IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG 378 (829)
Q Consensus 306 ~~~----~~~~~~~yv~Q~~---~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 378 (829)
... ..++.++|++|+. .+++.+|++||+.+...
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------- 104 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------- 104 (182)
T ss_pred CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------
Confidence 432 2356799999984 57888999999976420
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.+++++++|+|++++.|+
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 163 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE 163 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999999999999999999999999999999999999999999998778999988764
No 281
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.98 E-value=1.3e-31 Score=301.31 Aligned_cols=213 Identities=25% Similarity=0.408 Sum_probs=180.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
-++++|+++++ +..++|+|||+++++||++||+|.||||||||+|+|+|..++ .+|+|.++|++.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEc
Confidence 58899999987 457899999999999999999999999999999999997664 379999999986
Q ss_pred Cc----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 306 KQ----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 306 ~~----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.. +..+..|+.|.|+..+.|++||.||+.++...+.+ .-++.++-.+...++++.+++....++.++ .||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 53 22345689999999999999999999988665442 335666667788999999999644777765 799
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEc
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVG 445 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G 445 (829)
+||||-|.|||||..+++||+||||||.|+...+..+.+.+++++++|.+|+++.| |+|+.+-.+
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~ 227 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTR 227 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeec
Confidence 99999999999999999999999999999999999999999999999999954333 689999999
Q ss_pred CC-CC-CchhhHHHH
Q 044554 446 PL-GE-HSSHLIKYF 458 (829)
Q Consensus 446 ~~-~~-~~~~~~~~f 458 (829)
+. ++ +.+++++..
T Consensus 228 ~~~~~~~~~~lv~~M 242 (500)
T COG1129 228 PTAAETSEDELVRLM 242 (500)
T ss_pred ccccCCCHHHHHHHh
Confidence 94 54 334555555
No 282
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.98 E-value=3.3e-32 Score=328.96 Aligned_cols=189 Identities=28% Similarity=0.441 Sum_probs=153.2
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++++||+|+|+. +++.+|+|+|++++|||.+||+|+||||||||+|+|+|..++. +|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~--~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCE
Confidence 346999999999841 2356999999999999999999999999999999999986653 699999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGL 373 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~ 373 (829)
++++ ..+++.++||+|++.+++ .|++||+.++. | +.+.+ .+.++++..++.+. .|+.+|.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8754 356778999999987765 79999998742 1 22322 24455555555433 4566665
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
.+ .+||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++. +++|++++.|+
T Consensus 590 ~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~ 651 (694)
T TIGR01846 590 KG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHR 651 (694)
T ss_pred CC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 43 5899999999999999999999999999999999999999999999985 57898665553
No 283
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.98 E-value=2e-31 Score=293.88 Aligned_cols=237 Identities=24% Similarity=0.344 Sum_probs=191.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.+.++|+++.+ +...+++|||+++++||+.||+|+||||||||+++|.|...+ .+|+|.++|++.
T Consensus 4 ~l~~~~itK~f-------------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P--~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRF-------------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP--DSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEc-------------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC--CcceEEECCEEe
Confidence 57889999887 357899999999999999999999999999999999997765 379999999986
Q ss_pred Cc----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 306 KQ----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 306 ~~----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
.- +..+..||+|.|+..+.+++||.||+..+..-......+.++.+++++++.+.+||.--.|.+++ .||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCc
Confidence 43 23456799999999999999999999988653322335666677889999999999988888775 7999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGP 446 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~ 446 (829)
||||||.|-++|..+|++|||||||+-|-++..+++++.+++++++|+||+++.| |.||++-.-+
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999999999999999999977655 5799877666
Q ss_pred -CCC-CchhhHHHHhcCC-CccccCCCCCCcceEEeecC
Q 044554 447 -LGE-HSSHLIKYFEGIP-GVSTIKDGYNPATWMLEITT 482 (829)
Q Consensus 447 -~~~-~~~~~~~~f~~~~-~~~~~~~~~npAd~~l~v~~ 482 (829)
..+ ..+++.+-.-.-. ..+.-.....|.+.+|++-+
T Consensus 224 ~~~~~t~~ela~lMvG~~v~~~~~~~~~~pg~~vL~V~~ 262 (501)
T COG3845 224 PVAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVED 262 (501)
T ss_pred CCCCCCHHHHHHHhcCCccccccccCCCCCCCeEEEEee
Confidence 333 2233433331110 01111245577788888754
No 284
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.98 E-value=5.5e-32 Score=272.91 Aligned_cols=154 Identities=25% Similarity=0.454 Sum_probs=131.6
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+.. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHH
Confidence 468899998731 123699999999999999999999999999999999997654 3699999998753
Q ss_pred c--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 307 Q--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
. ...++.++|++|++.+++ .|++||+ +..||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHH
Confidence 2 234567899999987765 6998886 147999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||++|||+|+.+|++++|||||+|||+.++..+++.|+++. ++.|++++.|+
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~ 156 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHH 156 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 99999999999999999999999999999999999999985 58898887764
No 285
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.4e-31 Score=267.99 Aligned_cols=215 Identities=25% Similarity=0.305 Sum_probs=178.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++++. +++.||++||++|++||+.+||||||||||||.++|+|.+..-..+|+|.++|+++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 589999999983 22589999999999999999999999999999999999886655679999999987
Q ss_pred Cc----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCC
Q 044554 306 KQ----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLS 380 (829)
Q Consensus 306 ~~----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LS 380 (829)
.. ...+..+...+|.|.-.|..|+.+-|+.+...+........+-.+.+++.++.++++. ..++.++ .|+|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 54 2234567888999999999999999998766443221112344566888999999987 6666665 4899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec----------------CcEEEEE
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR----------------GGQEIYV 444 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~----------------~G~~vy~ 444 (829)
||||||..|+..++.+|++.+||||-||||..+-+.|.+.+++++++|++++++.|+ +|+++..
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999999999999776653 5888888
Q ss_pred cCCCCCchhhHHHHhcC
Q 044554 445 GPLGEHSSHLIKYFEGI 461 (829)
Q Consensus 445 G~~~~~~~~~~~~f~~~ 461 (829)
|.+ ++.++++.-
T Consensus 227 G~~-----el~~~le~~ 238 (251)
T COG0396 227 GDP-----ELAEELEEK 238 (251)
T ss_pred CCH-----HHHHHHHHh
Confidence 875 566777664
No 286
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.98 E-value=6.4e-32 Score=275.34 Aligned_cols=193 Identities=23% Similarity=0.362 Sum_probs=159.5
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
..-+.++|+++.+ +++.||+|+|++|+|||-.+|+|||||||||||++++|...++ +|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeee
Confidence 4469999999987 4689999999999999999999999999999999999976654 688899998
Q ss_pred ecCc----cccccceeEEec--CCCCCCCCCHHHHHHHhh--hhcCCC-CCCHHHHHHHHHHHHHHcCCccchhhhccCC
Q 044554 304 PKKQ----ETFTCISGYCEQ--NDIHSPNVTVYESLLYSA--WLRLPP-EVDSQTRKMFIEEVMELVELNTLRKALVGLP 374 (829)
Q Consensus 304 ~~~~----~~~~~~~~yv~Q--~~~~~~~lTV~E~l~f~a--~lr~~~-~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~ 374 (829)
+..+ .+.|+.||+|.- +..+.+..+|+|-+.-+. ...... ..+ ++..+.+..+++.+|+.+++|+..+
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~-~~~~~~a~~lle~~g~~~la~r~~~-- 170 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLT-AEDLAAAQWLLELLGAKHLADRPFG-- 170 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCC-HHHHHHHHHHHHHcchhhhccCchh--
Confidence 7643 345788999983 234456788888776332 222222 333 4556778999999999999998775
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT--GRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~--g~tvllll~~ 437 (829)
.||-|||||+-|||||+.+|++||||||++|||...++.+.+.+.+++.. +.+++++.|+
T Consensus 171 ---~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh 232 (257)
T COG1119 171 ---SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232 (257)
T ss_pred ---hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 79999999999999999999999999999999999999999999999865 7788777664
No 287
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.98 E-value=5.3e-32 Score=320.02 Aligned_cols=188 Identities=23% Similarity=0.337 Sum_probs=152.4
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|++++|+. +++.+|+|+|+++++||.++|+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 312 ~~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~i~~~g~~ 378 (569)
T PRK10789 312 GELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV--SEGDIRFHDIP 378 (569)
T ss_pred CcEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEE
Confidence 36999999999841 234699999999999999999999999999999999997664 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~ 374 (829)
... ..+++.++|++|++.+++ .|++||+.++. + +.+++ .++++++..++.+ -.|+.+|..
T Consensus 379 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 448 (569)
T PRK10789 379 LTKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR----P-DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGER 448 (569)
T ss_pred HhhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCC
Confidence 643 345678999999988876 59999998752 1 22322 2455555555542 335666654
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
...||||||||++|||+|+++|++++|||||||||+.++..+.+.|+++. +|+|++++.|+
T Consensus 449 -g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~ 509 (569)
T PRK10789 449 -GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHR 509 (569)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence 35799999999999999999999999999999999999999999999975 58999776664
No 288
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.98 E-value=5.6e-32 Score=314.54 Aligned_cols=192 Identities=19% Similarity=0.218 Sum_probs=156.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|++++|. ++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~~ 67 (490)
T PRK10938 3 SLQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQSQFSHI 67 (490)
T ss_pred eEEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEECCccc
Confidence 388999999882 24699999999999999999999999999999999997654 369999988764
Q ss_pred Cc---cccccceeEEecCCCC--C------CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCC
Q 044554 306 KQ---ETFTCISGYCEQNDIH--S------PNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLP 374 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~--~------~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~ 374 (829)
.. ...++.++|++|++.. + ..+||+|++.+. .+..++++++++.+++.+..++.+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~--- 133 (490)
T PRK10938 68 TRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF--- 133 (490)
T ss_pred ccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc---
Confidence 32 1234568999998643 1 147888887532 112345789999999988777765
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCc
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGG 439 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G 439 (829)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++.| ++|
T Consensus 134 --~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G 211 (490)
T PRK10938 134 --KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADC 211 (490)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 489999999999999999999999999999999999999999999999888889854333 468
Q ss_pred EEEEEcCCC
Q 044554 440 QEIYVGPLG 448 (829)
Q Consensus 440 ~~vy~G~~~ 448 (829)
+++..|+++
T Consensus 212 ~i~~~~~~~ 220 (490)
T PRK10938 212 TLAETGERE 220 (490)
T ss_pred EEEEeCCHH
Confidence 888888754
No 289
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.98 E-value=5.6e-32 Score=320.69 Aligned_cols=189 Identities=25% Similarity=0.422 Sum_probs=153.6
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+++|+. .+++.+|+|+|++++|||.++|+|+||||||||+|+|+|..++. +|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~----------~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~--~G~I~i~g~~ 403 (576)
T TIGR02204 336 GEIEFEQVNFAYPA----------RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ--SGRILLDGVD 403 (576)
T ss_pred ceEEEEEEEEECCC----------CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCEE
Confidence 36999999999842 12256999999999999999999999999999999999976653 6999999988
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 374 (829)
+++ ..+++.++|++|++.++ +.|++||+.++. | +.++ +.++++++..++.+. .|+.+|+.
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf-~~Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~ 473 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLF-AASVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGER 473 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccc-cccHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence 653 34567899999998766 579999998752 1 1222 235666666666433 34555553
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
...||||||||++|||+++++|++++||||||+||..+++.+++.++++. +++|++++.|+
T Consensus 474 -g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~ 534 (576)
T TIGR02204 474 -GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHR 534 (576)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence 35799999999999999999999999999999999999999999999985 48999888775
No 290
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=1.1e-31 Score=312.93 Aligned_cols=196 Identities=19% Similarity=0.296 Sum_probs=156.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+.. .+++.+|+|+|+++++||+++|+||||||||||||+|+|..++ ..+|+|.++|.++
T Consensus 257 ~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~ 325 (500)
T TIGR02633 257 ILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPV 325 (500)
T ss_pred eEEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEEC
Confidence 5889999876521 0134699999999999999999999999999999999997642 1269999999876
Q ss_pred Cc----cccccceeEEecCC---CCCCCCCHHHHHHHhhhhcCC--CCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCC
Q 044554 306 KQ----ETFTCISGYCEQND---IHSPNVTVYESLLYSAWLRLP--PEVDSQTRKMFIEEVMELVELNT-LRKALVGLPG 375 (829)
Q Consensus 306 ~~----~~~~~~~~yv~Q~~---~~~~~lTV~E~l~f~a~lr~~--~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~ 375 (829)
.. ...++.++|++|+. .+++.+||+||+.++..-... ...+.++.++.++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 401 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI---- 401 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc----
Confidence 42 12345689999995 578899999999876321110 11223334466889999999964 456654
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|.|||++.|+
T Consensus 402 -~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd 462 (500)
T TIGR02633 402 -GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSE 462 (500)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 4799999999999999999999999999999999999999999999998889999777654
No 291
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.98 E-value=1.8e-32 Score=349.91 Aligned_cols=192 Identities=19% Similarity=0.352 Sum_probs=158.0
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC------------
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG------------ 292 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g------------ 292 (829)
..++|+||+|+|+. .+++.+|+|+|++++||+.+||+||||||||||+++|.|..++.
T Consensus 1164 g~I~f~nVsF~Y~~----------~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYIS----------RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCC----------CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 46999999999942 12346999999999999999999999999999999999965541
Q ss_pred ----------------------------------------eeEEEEEEcCeecCc---cccccceeEEecCCCCCCCCCH
Q 044554 293 ----------------------------------------YITGNIAISGYPKKQ---ETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 293 ----------------------------------------~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
..+|+|.+||.++.+ ..+|+.++||+|++.+| +.|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 137999999998754 45788899999999877 5899
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-------ccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCccee
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVEL-------NTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFM 402 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~L 402 (829)
+|||.++. | +.+.++ ++++++..++ .+-.||.+|..+ ..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~----~-~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK----E-DATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999873 1 233332 5555555554 344578888654 57999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEEec
Q 044554 403 DEPTSGLDARAAAIFMRTVRNTV-DTGRTVLFLLKR 437 (829)
Q Consensus 403 DEPTsGLD~~~~~~i~~~l~~l~-~~g~tvllll~~ 437 (829)
|||||+||+.+++.|.+.|+++. .+++|+|++.||
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHR 1418 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEech
Confidence 99999999999999999999986 368999888875
No 292
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.4e-32 Score=298.29 Aligned_cols=205 Identities=25% Similarity=0.386 Sum_probs=163.6
Q ss_pred CCCCCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEE
Q 044554 220 LPFEPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIA 299 (829)
Q Consensus 220 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~ 299 (829)
+......+.|+||+|.|+ .++.+|+||||++.||+.+||+||||+||||++++|-...+. .+|.|.
T Consensus 531 l~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv--~sGsI~ 596 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV--NSGSIT 596 (790)
T ss_pred ccccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc--cCceEE
Confidence 334456899999999995 457899999999999999999999999999999999986653 379999
Q ss_pred EcCeecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHH--HHHHH-HHcCCccchhhhccC
Q 044554 300 ISGYPKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMF--IEEVM-ELVELNTLRKALVGL 373 (829)
Q Consensus 300 i~G~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~--v~~vl-~~l~L~~~~~~~vg~ 373 (829)
+||++++. .+.|+.||.||||..++. -|+..|++|+. |. .+.++..+. +..+- +.++..+-.++.+|.
T Consensus 597 iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak----~~-AsneevyaAAkAA~IHdrIl~fPegY~t~VGE 670 (790)
T KOG0056|consen 597 IDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK----PS-ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE 670 (790)
T ss_pred EcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC----CC-CChHHHHHHHHHhhHHHHHhcCchhhhhhhhh
Confidence 99998754 467888999999988775 69999999873 22 222322221 11221 346777888999998
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCc
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGG 439 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G 439 (829)
.|. .|||||||||+|||+++.+|.+++|||.||+||..+.++|...|.+++.. ||.+++.| ++|
T Consensus 671 RGL-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~-RTtIVvAHRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 671 RGL-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCAN-RTTIVVAHRLSTIVNADLILVISNG 748 (790)
T ss_pred ccc-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-CceEEEeeeehheecccEEEEEeCC
Confidence 776 59999999999999999999999999999999999999999999999874 44433322 467
Q ss_pred EEEEEcC
Q 044554 440 QEIYVGP 446 (829)
Q Consensus 440 ~~vy~G~ 446 (829)
+++..|.
T Consensus 749 ~IvErG~ 755 (790)
T KOG0056|consen 749 RIVERGR 755 (790)
T ss_pred eEeecCc
Confidence 7776665
No 293
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.98 E-value=1.4e-31 Score=317.24 Aligned_cols=187 Identities=25% Similarity=0.308 Sum_probs=149.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|++++|+ +++.+|+|+|+++++||.++|+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 333 ~~i~~~~v~~~y~------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 398 (585)
T TIGR01192 333 GAVEFRHITFEFA------------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILIDGID 398 (585)
T ss_pred CeEEEEEEEEECC------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEECCEE
Confidence 3699999999983 224589999999999999999999999999999999997665 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-------cchhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-------TLRKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~~ 374 (829)
..+ ..+++.++||+|++.+++ .|++||+.++. | +.++++ +++.++..++. +-.|+.+|..
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~ 468 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGER 468 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhCcHHHHHhccccccchhcCC
Confidence 653 346778999999987775 79999998753 1 223322 23333333332 2335556654
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
...||||||||++|||+|+++|++|+|||||||||+.++..+.+.|+++. +++|++++.|+
T Consensus 469 -~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~ 529 (585)
T TIGR01192 469 -GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHR 529 (585)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcC
Confidence 35799999999999999999999999999999999999999999999874 58999777664
No 294
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2.7e-31 Score=274.26 Aligned_cols=175 Identities=25% Similarity=0.309 Sum_probs=140.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+.. .++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA--EEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEh
Confidence 5899999998831 124699999999999999999999999999999999997654 379999999876
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
.. ...++.++|++|++.+++ .||+||+.+.. ..+.+ .+.+.++ + +. .++.||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~---~----~~-----~~~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR---V----SE-----GGLNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh---c----cC-----CCCcCCHH
Confidence 32 224567999999987776 59999996531 11211 1233333 1 11 24689999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|++++.|+
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~ 183 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHR 183 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999985 48898877654
No 295
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.2e-31 Score=252.18 Aligned_cols=189 Identities=23% Similarity=0.310 Sum_probs=163.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-CeeEEEEEEcCeec
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS-GYITGNIAISGYPK 305 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~-g~~~G~i~i~G~~~ 305 (829)
++++||+... ++..+|-++|++|.+||++.||||||||||||+..+.|...+ -..+|++.+|++.+
T Consensus 3 l~l~nvsl~l-------------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 3 LCLKNVSLRL-------------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred eeeeeeeecC-------------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 6788888643 457899999999999999999999999999999999996543 25689999999987
Q ss_pred Ccc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
+.. .-+|.+|..+||+.++|.++|.+||.|+ +|..+..+.|+..++..++..||++..+.- +..||||||
T Consensus 70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQr 140 (213)
T COG4136 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQR 140 (213)
T ss_pred cccchhhhheeeeecccccccccccccceEEe----cCcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchH
Confidence 643 3467899999999999999999999986 456666667888899999999999888763 468999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRN-TVDTGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~-l~~~g~tvllll~~ 437 (829)
-|+++-|+|+..|+.++||||+|.||..-+.++.+.+-. ....|..++.+.|+
T Consensus 141 ARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 141 ARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred HHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 999999999999999999999999999999999987754 44568888888875
No 296
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=2.3e-31 Score=276.96 Aligned_cols=184 Identities=23% Similarity=0.331 Sum_probs=143.1
Q ss_pred EEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc
Q 044554 228 TFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ 307 (829)
Q Consensus 228 ~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~ 307 (829)
.+.|+++.+. +++.+++|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~ 67 (218)
T cd03290 2 QVTNGYFSWG------------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESE 67 (218)
T ss_pred eeeeeEEecC------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCccccc
Confidence 4567777763 235699999999999999999999999999999999997654 36999999986532
Q ss_pred -------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhh-------hccC
Q 044554 308 -------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKA-------LVGL 373 (829)
Q Consensus 308 -------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~-------~vg~ 373 (829)
...++.++|++|++.++ ..|++||+.+... .+.+ ..+++++.+++.+..+. ..+.
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 136 (218)
T cd03290 68 PSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGE 136 (218)
T ss_pred ccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCccc
Confidence 12345689999998776 5799999987531 1111 23455666666543321 1122
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHH--HHHHHHhCCCeEEEEEec
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR--TVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~--~l~~l~~~g~tvllll~~ 437 (829)
.+..||||||||++|||+|+.+|++++|||||+|||+.++..+++ +++.+.++|.|++++.|+
T Consensus 137 -~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~ 201 (218)
T cd03290 137 -RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK 201 (218)
T ss_pred -CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 246899999999999999999999999999999999999999998 666666668999998875
No 297
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=2e-31 Score=278.49 Aligned_cols=180 Identities=23% Similarity=0.320 Sum_probs=142.2
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCC--CCCCHHHHHHHhh
Q 044554 260 GAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHS--PNVTVYESLLYSA 337 (829)
Q Consensus 260 ~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~--~~lTV~E~l~f~a 337 (829)
+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.. ..++.++|++|++.+. ..+|++||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 46889999999999999999999999997654 3699999998753 2356799999998653 3589999998753
Q ss_pred hhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHH
Q 044554 338 WLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 416 (829)
Q Consensus 338 ~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~ 416 (829)
..... ...+.++..+.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111223356888999999987776654 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEec--------------CcEEEEEcCCC
Q 044554 417 FMRTVRNTVDTGRTVLFLLKR--------------GGQEIYVGPLG 448 (829)
Q Consensus 417 i~~~l~~l~~~g~tvllll~~--------------~G~~vy~G~~~ 448 (829)
+.+.|++++++|+|++++.|+ +|++++.|+.+
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~~~~~ 197 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHH
Confidence 999999998778898543332 37777777654
No 298
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=6e-31 Score=298.85 Aligned_cols=192 Identities=21% Similarity=0.315 Sum_probs=153.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+.. ...+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~----------~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKD----------GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCC----------CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee
Confidence 4788888887631 1225699999999999999999999999999999999997654 369999999641
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
++.+...+.+.+||+||+.+..... ..+.++..+.++++++.+++.+..++.+ +.|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1222344567789999998754322 1233444456788999999988777654 589999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcCC
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~~ 447 (829)
|++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+||+++.| ++|+++..|++
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~ 227 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDI 227 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999878889855443 35777777765
No 299
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-31 Score=310.95 Aligned_cols=190 Identities=21% Similarity=0.306 Sum_probs=152.8
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc----ccccceeEEecCC---CCCC
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE----TFTCISGYCEQND---IHSP 325 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~----~~~~~~~yv~Q~~---~~~~ 325 (829)
.+++|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|+++... ..++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 489999999999999999999999999999999997654 369999999876421 1245689999985 4788
Q ss_pred CCCHHHHHHHhhhhcC-CCC--CCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcce
Q 044554 326 NVTVYESLLYSAWLRL-PPE--VDSQTRKMFIEEVMELVELN-TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIF 401 (829)
Q Consensus 326 ~lTV~E~l~f~a~lr~-~~~--~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~ 401 (829)
.+||.||+.+...... +.. .+..+.++.++++++.+++. +..++.+ ..||||||||++||++|+.+|++|+
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEE
Confidence 9999999987542111 001 12223345678999999994 5677765 4799999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcCCCC
Q 044554 402 MDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGPLGE 449 (829)
Q Consensus 402 LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~~~~ 449 (829)
|||||+|||..++.++++.|++++++|.|||++.| ++|++++.|++++
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999988999965544 3577777776654
No 300
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2.6e-31 Score=273.73 Aligned_cols=177 Identities=22% Similarity=0.386 Sum_probs=137.6
Q ss_pred EEEEeeEEEEeCCccccCCCCCCC--ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 227 ITFDDITYSVDMPQEMINPGVSED--QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~--~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
++++||++.+.. .+ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 1 l~~~~l~~~~~~----------~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g-- 66 (204)
T cd03250 1 ISVEDASFTWDS----------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG-- 66 (204)
T ss_pred CEEeEEEEecCC----------CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC--
Confidence 468899998731 01 13699999999999999999999999999999999997654 379999998
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhh-------hccCCCCC
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKA-------LVGLPGLN 377 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~-------~vg~~~~~ 377 (829)
.++|++|++.++ ..|++||+.+... .+.+ ..++..+.+++.+..+. ..+. ...
T Consensus 67 --------~i~~~~q~~~l~-~~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~ 126 (204)
T cd03250 67 --------SIAYVSQEPWIQ-NGTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIGE-KGI 126 (204)
T ss_pred --------EEEEEecCchhc-cCcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceecC-CCC
Confidence 489999998876 5799999987532 1111 12333444444322221 1222 246
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEEec
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR-TVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~-~l~~l~~~g~tvllll~~ 437 (829)
.||+|||||++|||+|+.+|++++|||||+|||+.++..+.+ +++++.++|+||+++.|+
T Consensus 127 ~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~ 187 (204)
T cd03250 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187 (204)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCC
Confidence 899999999999999999999999999999999999999998 567776668999998865
No 301
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.97 E-value=2.9e-31 Score=272.78 Aligned_cols=159 Identities=26% Similarity=0.356 Sum_probs=133.5
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|..+.-..+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CeEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 46889998872 35699999999999999999999999999999999997311124699999999875
Q ss_pred cc---c-cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 307 QE---T-FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 307 ~~---~-~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
.. . .++.++|++|++.+++..|+++++. .. .+.||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G 108 (200)
T cd03217 68 DLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGG 108 (200)
T ss_pred cCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHH
Confidence 32 1 2345999999988888888887760 00 1369999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|++++.|+
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~ 163 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999998778999888764
No 302
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=1.4e-31 Score=285.69 Aligned_cols=198 Identities=22% Similarity=0.278 Sum_probs=150.0
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++++|+++.++. .++.+|+|+|++++|||+++|+|+||||||||+++|+|..++ .+|+|.++|.
T Consensus 17 ~~~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~ 83 (257)
T cd03288 17 GGEIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGI 83 (257)
T ss_pred CceEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCE
Confidence 346999999999831 124699999999999999999999999999999999997654 3799999998
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhh-------ccC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKAL-------VGL 373 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~-------vg~ 373 (829)
++.. ...++.++|++|++.+++ .|++||+.... .... +.+++.++..++.+..+.. .+.
T Consensus 84 ~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 152 (257)
T cd03288 84 DISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE 152 (257)
T ss_pred EhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEecc
Confidence 7643 234667999999987775 59999985321 1111 1133344444443332222 111
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCc
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGG 439 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G 439 (829)
..+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.++++. ++.|++++.| ++|
T Consensus 153 -~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~dri~~l~~G 230 (257)
T cd03288 153 -GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILDADLVLVLSRG 230 (257)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHhCCEEEEEECC
Confidence 246899999999999999999999999999999999999999999999875 4788855433 357
Q ss_pred EEEEEcCC
Q 044554 440 QEIYVGPL 447 (829)
Q Consensus 440 ~~vy~G~~ 447 (829)
+++..|+.
T Consensus 231 ~i~~~g~~ 238 (257)
T cd03288 231 ILVECDTP 238 (257)
T ss_pred EEEEeCCH
Confidence 77777664
No 303
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.9e-32 Score=260.22 Aligned_cols=177 Identities=24% Similarity=0.350 Sum_probs=151.1
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc---cccccceeEEecCCCCCCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ---ETFTCISGYCEQNDIHSPN 326 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~~~~~~~ 326 (829)
++..+|+++|+.+++||..+|.||||||||||+|+++...++ .+|++++.|++.+. ..+|+.++||.|.+.+++
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg- 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG- 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCccccc-
Confidence 557899999999999999999999999999999999998765 37999999998754 457889999999999987
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCC
Q 044554 327 VTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPT 406 (829)
Q Consensus 327 lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPT 406 (829)
-||++|+.|..++|.... + .+...+.++.+++.+..-+. .+..||||||||++|+|.|...|+||+|||||
T Consensus 91 ~tVeDNlifP~~~r~rr~-d----r~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRP-D----RAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred cchhhccccchHHhccCC-C----hHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 599999999887764322 1 23356788888887643222 24589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCeEEEEEecC
Q 044554 407 SGLDARAAAIFMRTVRNTV-DTGRTVLFLLKRG 438 (829)
Q Consensus 407 sGLD~~~~~~i~~~l~~l~-~~g~tvllll~~~ 438 (829)
|+||..+++.|-+.|.++. ++.+.++.+.|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~ 194 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecCh
Confidence 9999999999999999986 6789999999864
No 304
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.8e-31 Score=343.53 Aligned_cols=197 Identities=23% Similarity=0.293 Sum_probs=160.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++|+||+++|+. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEE
Confidence 46999999999931 235699999999999999999999999999999999998765 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 374 (829)
+.+ ..+|+.++||||++.+++ .|+||||.+.. +.+++ .+.++++..++.+. .|+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 754 456788999999998886 59999997541 22332 35666666666443 35666654
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcE
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQ 440 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~ 440 (829)
+ ..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|++++.| ++|+
T Consensus 1369 G-~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1446 (1495)
T PLN03232 1369 G-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIIDCDKILVLSSGQ 1446 (1495)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 3 5799999999999999999999999999999999999999999999874 4788855444 3688
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
++.+|++
T Consensus 1447 ivE~Gt~ 1453 (1495)
T PLN03232 1447 VLEYDSP 1453 (1495)
T ss_pred EEEECCH
Confidence 8888875
No 305
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=4.7e-31 Score=263.27 Aligned_cols=147 Identities=29% Similarity=0.373 Sum_probs=126.9
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 1 i~~~~~~~~~~------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATP------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcC------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC---
Confidence 46889998872 124699999999999999999999999999999999997654 3699998873
Q ss_pred ccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHH
Q 044554 307 QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKR 386 (829)
Q Consensus 307 ~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqR 386 (829)
+.++|++|++.++ ..||+||+.+. ..+.||||||||
T Consensus 64 -----~~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~r 99 (166)
T cd03223 64 -----EDLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQR 99 (166)
T ss_pred -----ceEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHH
Confidence 4689999998654 67999998652 024799999999
Q ss_pred HHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 387 LTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 387 lsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
++|||+|+.+|++++|||||+|||+.++..+.+.++++ ++|++++.|+
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~ 147 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHR 147 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCC
Confidence 99999999999999999999999999999999999886 5888888764
No 306
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.2e-32 Score=278.23 Aligned_cols=176 Identities=26% Similarity=0.408 Sum_probs=149.4
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-------cccccceeEEecCCCCCCCCCH
Q 044554 257 GVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ-------ETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 257 ~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~-------~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
++++..+.-.++||-|+||||||||+|+|+|...+. +|.|.+||....+ ...+|++|||+||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 567777765699999999999999999999976653 6899999975422 2346789999999999999999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCC
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGL 409 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGL 409 (829)
+.||.|+.... .....+++.+.||++|+.++. +..|||||||||+|||||+++|++|+||||.+.|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~-----P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY-----PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhC-----CCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999986421 223478999999999999986 4589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeE----------------EEEEecCcEEEEEcCCCC
Q 044554 410 DARAAAIFMRTVRNTVDT-GRTV----------------LFLLKRGGQEIYVGPLGE 449 (829)
Q Consensus 410 D~~~~~~i~~~l~~l~~~-g~tv----------------llll~~~G~~vy~G~~~~ 449 (829)
|-....+++-.|+++.++ +.-| +++| .+||+..+|+.++
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~l-e~GkV~A~g~~e~ 215 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVL-ENGKVKASGPLEE 215 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEe-cCCeEEecCcHHH
Confidence 999999999999999976 5555 3444 6899999999754
No 307
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=5.9e-31 Score=306.67 Aligned_cols=176 Identities=20% Similarity=0.328 Sum_probs=144.0
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc----ccccceeEEecCC---CCCCC
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE----TFTCISGYCEQND---IHSPN 326 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~----~~~~~~~yv~Q~~---~~~~~ 326 (829)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 69999999999999999999999999999999997654 369999999876421 1345699999995 46788
Q ss_pred CCHHHHHHHhhhhcCC---CCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCccee
Q 044554 327 VTVYESLLYSAWLRLP---PEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFM 402 (829)
Q Consensus 327 lTV~E~l~f~a~lr~~---~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~L 402 (829)
+||+||+.+....... ...+.++..+.++++++.+++. +..++.+ ..||||||||++||++|+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875321110 0122333345688999999995 5666654 47999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 403 DEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 403 DEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
||||+|||+.++..+.+.|++++++|+|||++.|
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtH 453 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSS 453 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 9999999999999999999999888999865544
No 308
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=3.4e-31 Score=267.71 Aligned_cols=152 Identities=29% Similarity=0.472 Sum_probs=126.7
Q ss_pred EEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc
Q 044554 229 FDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE 308 (829)
Q Consensus 229 ~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~ 308 (829)
++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+....
T Consensus 2 ~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~ 66 (180)
T cd03214 2 VENLSVGYG-------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASL 66 (180)
T ss_pred eeEEEEEEC-------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcC
Confidence 678888872 25699999999999999999999999999999999997654 379999999876421
Q ss_pred ---ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 309 ---TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 309 ---~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
.+++.++|++| +++.+++.+..++. ++.|||||||
T Consensus 67 ~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~q 104 (180)
T cd03214 67 SPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGERQ 104 (180)
T ss_pred CHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHHH
Confidence 23345677777 45556666554443 3579999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |.|++++.|+
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 999999999999999999999999999999999999999876 8899887764
No 309
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=278.43 Aligned_cols=215 Identities=25% Similarity=0.344 Sum_probs=179.2
Q ss_pred CCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcC
Q 044554 223 EPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG 302 (829)
Q Consensus 223 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G 302 (829)
.+.-++.+|+...++.+...-+. ..+...++|+||+++++||.++|+|+||||||||=.+|.+...+ +|+|.++|
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G 347 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDG 347 (534)
T ss_pred CCceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECC
Confidence 35579999999999876432222 22456899999999999999999999999999999999997764 49999999
Q ss_pred eecCc------cccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCC
Q 044554 303 YPKKQ------ETFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLP 374 (829)
Q Consensus 303 ~~~~~------~~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~ 374 (829)
.++.. ...|+.+-.|+||+ .+.|.+||.|-+.-+.....| ..+..+|.+++.++++..||+.-. .-.
T Consensus 348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~--r~R-- 422 (534)
T COG4172 348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT--RNR-- 422 (534)
T ss_pred ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH--hhc--
Confidence 98753 24567789999998 578999999999988776654 457788999999999999998532 222
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeE----------------EEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTV----------------LFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tv----------------llll~~ 437 (829)
.+++.|||||||++|||||+.+|++++||||||+||-.-+.+|+++|+++.++ |.+- +++| +
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm-~ 501 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVM-R 501 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEE-e
Confidence 35799999999999999999999999999999999999999999999999765 6554 4566 6
Q ss_pred CcEEEEEcCCC
Q 044554 438 GGQEIYVGPLG 448 (829)
Q Consensus 438 ~G~~vy~G~~~ 448 (829)
+||+|..|+.+
T Consensus 502 ~GkiVE~G~~~ 512 (534)
T COG4172 502 DGKIVEQGPTE 512 (534)
T ss_pred CCEEeeeCCHH
Confidence 89999999963
No 310
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=3.4e-31 Score=341.32 Aligned_cols=199 Identities=24% Similarity=0.309 Sum_probs=162.7
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++|+||+++|+. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEe
Confidence 46999999999941 224699999999999999999999999999999999998765 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~ 374 (829)
+.+ ..+|+.+++||||+.++. .|+||||.++. +.+++ .+.++++..++.+ -.|+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~------~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFN------EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCC------CCCHH----HHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 764 456788999999998886 59999997642 12222 2556666655543 345666654
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcE
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQ 440 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~ 440 (829)
+ ..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|++++.| ++|+
T Consensus 1372 G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~ 1449 (1622)
T PLN03130 1372 G-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGR 1449 (1622)
T ss_pred C-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCE
Confidence 3 4799999999999999999999999999999999999999999999875 4788854433 4799
Q ss_pred EEEEcCCCC
Q 044554 441 EIYVGPLGE 449 (829)
Q Consensus 441 ~vy~G~~~~ 449 (829)
++.+|++.+
T Consensus 1450 IvE~Gt~~e 1458 (1622)
T PLN03130 1450 VVEFDTPEN 1458 (1622)
T ss_pred EEEeCCHHH
Confidence 999999753
No 311
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.5e-31 Score=264.63 Aligned_cols=151 Identities=32% Similarity=0.518 Sum_probs=129.4
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+.. .+..+++|+|+++++||+++|+||||||||||+++|+|..++ .+|++.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhh
Confidence 467899988731 113699999999999999999999999999999999997654 3699999998764
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
. ..+++.++|++|++.+++ .|+.||+ |||||
T Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~ 101 (171)
T cd03228 68 DLDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQ 101 (171)
T ss_pred hcCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHH
Confidence 2 234567899999987665 6888876 89999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|++++.|+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~ 154 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHR 154 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecC
Confidence 9999999999999999999999999999999999999999864 7888888764
No 312
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=309.04 Aligned_cols=205 Identities=24% Similarity=0.342 Sum_probs=169.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|+.. .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|++.+||.++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEc
Confidence 48999999998410 1235799999999999999999999999999999999998664 379999999986
Q ss_pred Ccc---c----cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCC
Q 044554 306 KQE---T----FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG 378 (829)
Q Consensus 306 ~~~---~----~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 378 (829)
... . .++.++|++|+..+++.+|+.||+.+..... ..+.++.++.++++++.+++.+..|+.. +.
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----cc
Confidence 531 1 1457899999999899999999998865322 2233455567889999999988777654 47
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcEEEEE
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQEIYV 444 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~~vy~ 444 (829)
||+|||||+.|||+|+.+|++|+|||||+|||..+++.+.+.+++++++|+|++++.| ++|+++..
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRN 224 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999999999877899855433 46888888
Q ss_pred cCCCC
Q 044554 445 GPLGE 449 (829)
Q Consensus 445 G~~~~ 449 (829)
|+..+
T Consensus 225 g~~~~ 229 (648)
T PRK10535 225 PPAQE 229 (648)
T ss_pred cCccc
Confidence 88753
No 313
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.97 E-value=2.1e-31 Score=292.99 Aligned_cols=217 Identities=25% Similarity=0.392 Sum_probs=174.6
Q ss_pred CCcCCCCCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEE
Q 044554 217 GMVLPFEPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITG 296 (829)
Q Consensus 217 ~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G 296 (829)
.+.+|.+...+.++++++.- | ..++.+|+|+||.+.+||.+||+||||||||||.|+|.|.-.+ .+|
T Consensus 325 ~m~LP~P~g~L~Ve~l~~~P--P---------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p--~~G 391 (580)
T COG4618 325 RMPLPAPQGALSVERLTAAP--P---------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP--TSG 391 (580)
T ss_pred CCCCCCCCceeeEeeeeecC--C---------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc--CCC
Confidence 46777777889999999832 1 3457899999999999999999999999999999999996543 369
Q ss_pred EEEEcCeecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHH-----HHHHHHHHHHHHcCCccchh
Q 044554 297 NIAISGYPKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQ-----TRKMFIEEVMELVELNTLRK 368 (829)
Q Consensus 297 ~i~i~G~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~-----~~~~~v~~vl~~l~L~~~~~ 368 (829)
.|.+||.+.++ +.+-+.+||.|||-.+|+ -||.||+.- ...+.+.+ .|.+.+.+++ +.+.+-.|
T Consensus 392 ~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR-----f~~~~d~~kIieAA~lAgvHelI--l~lP~GYd 463 (580)
T COG4618 392 SVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR-----FGEEADPEKVIEAARLAGVHELI--LRLPQGYD 463 (580)
T ss_pred cEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh-----ccccCCHHHHHHHHHHcChHHHH--HhCcCCcc
Confidence 99999988754 456678999999988876 799999952 22233332 2233344544 35666789
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe------------
Q 044554 369 ALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK------------ 436 (829)
Q Consensus 369 ~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~------------ 436 (829)
|.+|..+ ..||||||||+++||||-.||.+++||||-|+||......+.+.|.+++++|.|++++.|
T Consensus 464 T~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkil 542 (580)
T COG4618 464 TRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKIL 542 (580)
T ss_pred CccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceee
Confidence 9999765 589999999999999999999999999999999999999999999999999988854333
Q ss_pred --cCcEEEEEcCCCCCchhhHHHHh
Q 044554 437 --RGGQEIYVGPLGEHSSHLIKYFE 459 (829)
Q Consensus 437 --~~G~~vy~G~~~~~~~~~~~~f~ 459 (829)
++|++-.||+. ++++....
T Consensus 543 vl~~G~~~~FG~r----~eVLa~~~ 563 (580)
T COG4618 543 VLQDGRIAAFGPR----EEVLAKVL 563 (580)
T ss_pred eecCChHHhcCCH----HHHHHHhc
Confidence 57999999997 44555543
No 314
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.97 E-value=1e-30 Score=307.73 Aligned_cols=185 Identities=18% Similarity=0.265 Sum_probs=149.6
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|++|+|+ +++.+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 321 ~~i~~~~v~f~y~------------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 386 (547)
T PRK10522 321 QTLELRNVTFAYQ------------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKP 386 (547)
T ss_pred ceEEEEEEEEEeC------------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEE
Confidence 3699999999984 224699999999999999999999999999999999997665 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
..+ ..+++.++||+|++.+++ .|++|| . ... .++.+++.++.+++.+..+..-|......|||
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSg 452 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------KPA----NPALVEKWLERLKMAHKLELEDGRISNLKLSK 452 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------Cch----HHHHHHHHHHHcCCchhhhccccCCCCCCCCH
Confidence 754 346778999999987665 688877 1 111 22346788888888764432111111357999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
|||||++|||+|+++|++|+||||||+||+.++..+.+.+.+..+ +++|++++.|+
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~ 509 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEec
Confidence 999999999999999999999999999999999999999987654 58999999886
No 315
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=1.8e-30 Score=258.25 Aligned_cols=137 Identities=29% Similarity=0.443 Sum_probs=120.6
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECC
Confidence 46889999883 24699999999999999999999999999999999997654 3699999998764
Q ss_pred cc----ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 307 QE----TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 307 ~~----~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
.. ..++.++|++| ||||
T Consensus 66 ~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G 86 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-----------------------------------------------------------LSVG 86 (163)
T ss_pred cCCHHHHHhcCeEEEEe-----------------------------------------------------------cCHH
Confidence 31 13456788877 9999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||++|||+|+.+|++++|||||+|||..++..+.+.|++++++|.|++++.|+
T Consensus 87 ~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999998778999888764
No 316
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1.6e-30 Score=303.39 Aligned_cols=176 Identities=21% Similarity=0.267 Sum_probs=141.8
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc----ccccceeEEecCC---CCCCC
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE----TFTCISGYCEQND---IHSPN 326 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~----~~~~~~~yv~Q~~---~~~~~ 326 (829)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++... ..++.++|++|+. .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 59999999999999999999999999999999997654 269999999876431 1234689999984 47788
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCC
Q 044554 327 VTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEP 405 (829)
Q Consensus 327 lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEP 405 (829)
+|+.||+......+.+......+.++.++++++.+++. +..++.+ +.||||||||++||++|+.+|++|+||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999996431111111111222335688999999997 6667654 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 406 TSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 406 TsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|+|||+.++..+.+.|++++++|.|||++.|
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsH 461 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISS 461 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECC
Confidence 9999999999999999999888999866554
No 317
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=1.7e-30 Score=335.04 Aligned_cols=198 Identities=20% Similarity=0.243 Sum_probs=161.0
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++|+||+++|+. +...+|+|||++++|||.+||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEE
Confidence 46999999999942 224699999999999999999999999999999999997765 36999999999
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 374 (829)
+.+ ..+|+.+++||||+.+++ .|+||||.... +.+++ .+.++++..++.+. .|+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~-gTIr~NLdp~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFS-GSLRMNLDPFS------QYSDE----EVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccC-ccHHHHcCccc------CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 764 356788999999999886 59999996211 22332 25666776666533 46666654
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcE
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQ 440 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~ 440 (829)
+ ..||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|++++.| ++|+
T Consensus 1419 G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1419 G-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDYTRVIVLDKGE 1496 (1522)
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 3 5799999999999999999999999999999999999999999999864 4788854443 4688
Q ss_pred EEEEcCCC
Q 044554 441 EIYVGPLG 448 (829)
Q Consensus 441 ~vy~G~~~ 448 (829)
++.+|++.
T Consensus 1497 IvE~G~~~ 1504 (1522)
T TIGR00957 1497 VAEFGAPS 1504 (1522)
T ss_pred EEEECCHH
Confidence 88888863
No 318
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=2.3e-30 Score=333.08 Aligned_cols=197 Identities=22% Similarity=0.242 Sum_probs=160.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++|+||+++|+. +...+|+|||++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 46999999999941 234699999999999999999999999999999999998765 36999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 374 (829)
+.+ ..+|+.++||||++.+++ .||||||... .+.++ +.+.++++..++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 457888999999998876 5999999632 12233 236777777777553 46667654
Q ss_pred CCCCCCHHHHHHHHHHHHhhhC-CCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCc
Q 044554 375 GLNGLSTEKRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGG 439 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~-p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G 439 (829)
+ ..||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|+|++.| ++|
T Consensus 1443 G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G 1520 (1560)
T PTZ00243 1443 G-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQYDKIIVMDHG 1520 (1560)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 3 57999999999999999996 89999999999999999999999999864 4788855444 367
Q ss_pred EEEEEcCC
Q 044554 440 QEIYVGPL 447 (829)
Q Consensus 440 ~~vy~G~~ 447 (829)
+++..|++
T Consensus 1521 ~VvE~Gt~ 1528 (1560)
T PTZ00243 1521 AVAEMGSP 1528 (1560)
T ss_pred EEEEECCH
Confidence 88877775
No 319
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=3e-30 Score=284.29 Aligned_cols=170 Identities=29% Similarity=0.402 Sum_probs=141.9
Q ss_pred EEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHH
Q 044554 270 LMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQ 348 (829)
Q Consensus 270 l~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~ 348 (829)
|+||||||||||||+|+|..++ .+|+|.++|.++.. ...++.++|++|+..+++.+||+||+.|+.+.+ ..+.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP--DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 6899999999999999997654 37999999988643 223567999999999999999999999976432 12334
Q ss_pred HHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-
Q 044554 349 TRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT- 427 (829)
Q Consensus 349 ~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~- 427 (829)
+.+++++++++.++|.+..++.+ +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 44567899999999998877754 589999999999999999999999999999999999999999999999765
Q ss_pred CCeEEEEEe---------------cCcEEEEEcCCCC
Q 044554 428 GRTVLFLLK---------------RGGQEIYVGPLGE 449 (829)
Q Consensus 428 g~tvllll~---------------~~G~~vy~G~~~~ 449 (829)
|+|++++.| ++|+++..|++++
T Consensus 151 g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~ 187 (325)
T TIGR01187 151 GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEE 187 (325)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 888844322 4799999998743
No 320
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=2.6e-30 Score=300.61 Aligned_cols=192 Identities=20% Similarity=0.334 Sum_probs=150.8
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 599999999882 35699999999999999999999999999999999996432 1369999999764
Q ss_pred Cc----cccccceeEEecCCCCCC--CCCHHHHHHHhhhh--cCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCC
Q 044554 306 KQ----ETFTCISGYCEQNDIHSP--NVTVYESLLYSAWL--RLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGL 376 (829)
Q Consensus 306 ~~----~~~~~~~~yv~Q~~~~~~--~lTV~E~l~f~a~l--r~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~ 376 (829)
.. ...++.++|++|++.++. ..|++|++.+.... ........ +.++.++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSD-RQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCH-HHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 123457899999875543 35777776543211 11111122 23456889999999987 666654
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGR-TVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~-tvllll~~ 437 (829)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++++. |||++.|+
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd 461 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH 461 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 47999999999999999999999999999999999999999999999987765 57877764
No 321
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.1e-30 Score=297.52 Aligned_cols=190 Identities=16% Similarity=0.235 Sum_probs=148.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.. +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 250 ~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 312 (491)
T PRK10982 250 ILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKI 312 (491)
T ss_pred EEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEEC
Confidence 58889888741 2489999999999999999999999999999999997654 379999999876
Q ss_pred Cccc----cccceeEEecCC---CCCCCCCHHHHHHHhhh--h-cCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCC
Q 044554 306 KQET----FTCISGYCEQND---IHSPNVTVYESLLYSAW--L-RLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLP 374 (829)
Q Consensus 306 ~~~~----~~~~~~yv~Q~~---~~~~~lTV~E~l~f~a~--l-r~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~ 374 (829)
.... .++.++|++|+. .+++.+|+.||..+... . ......+..+.++.++++++.+++. +..++.+
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 389 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI--- 389 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc---
Confidence 4321 244589999985 35778888877433210 0 0000012223345678899999985 4456554
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
..||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+||+++.|+
T Consensus 390 --~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd 450 (491)
T PRK10982 390 --GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450 (491)
T ss_pred --ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 5899999999999999999999999999999999999999999999998889999776553
No 322
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=4.9e-30 Score=302.34 Aligned_cols=190 Identities=17% Similarity=0.227 Sum_probs=151.4
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+|+|+.+ ...++.+|+|+|+++++||++||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~--------~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p--~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAP--------EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP--QEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCC--------CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 469999999999421 00124699999999999999999999999999999999997665 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhh-ccCCCCCCCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKAL-VGLPGLNGLS 380 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~-vg~~~~~~LS 380 (829)
+.+ ..+++.++||+|++.++. .|++||.. + + ...+.++++++.+++.+..+.. -|......||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~-------~-~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLFD-DLIGPDEG-------E-H----ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhhh-hhhhcccc-------c-c----hhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 754 345678999999987664 58888841 1 1 1223467888999887655432 2222235799
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHH-HHHhCCCeEEEEEec
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVR-NTVDTGRTVLFLLKR 437 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~-~l~~~g~tvllll~~ 437 (829)
||||||++|||+|+.+|++++||||||+||+.++..+.+.+. ++..+|+|++++.|+
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~ 530 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 999999999999999999999999999999999999998664 455678999999875
No 323
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=2.8e-29 Score=270.80 Aligned_cols=174 Identities=20% Similarity=0.328 Sum_probs=134.2
Q ss_pred CCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcC
Q 044554 223 EPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG 302 (829)
Q Consensus 223 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G 302 (829)
....++++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 36 ~~~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i~g 98 (282)
T cd03291 36 DDNNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKHSG 98 (282)
T ss_pred CCCeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC
Confidence 3456999999984 13599999999999999999999999999999999997654 369999987
Q ss_pred eecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhh-------hccCCC
Q 044554 303 YPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKA-------LVGLPG 375 (829)
Q Consensus 303 ~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~-------~vg~~~ 375 (829)
.++|++|++.+++ .||+||+.+.... ... .+.+.++.+++.+..+. .++. .
T Consensus 99 ----------~i~yv~q~~~l~~-~tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~ 156 (282)
T cd03291 99 ----------RISFSSQFSWIMP-GTIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLGE-G 156 (282)
T ss_pred ----------EEEEEeCcccccc-cCHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceecC-C
Confidence 2799999987776 5999999875311 111 12334444454433222 2221 2
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHH-HHHHhCCCeEEEEEe
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTV-RNTVDTGRTVLFLLK 436 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l-~~l~~~g~tvllll~ 436 (829)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.+ +++. ++.||+++.|
T Consensus 157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH 217 (282)
T cd03291 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTS 217 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeC
Confidence 3589999999999999999999999999999999999999999865 5554 4788866554
No 324
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=7.7e-30 Score=270.28 Aligned_cols=161 Identities=22% Similarity=0.256 Sum_probs=133.3
Q ss_pred eeeeeEEEEe-----CCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCC
Q 044554 254 LLNGVSGAFR-----PGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVT 328 (829)
Q Consensus 254 iL~~vs~~i~-----~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 328 (829)
.++|++++++ +||+++|+||||||||||+++|+|..++ .+|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p--~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP--DEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5566666665 7999999999999999999999997654 3699999874 4799999987777899
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCC
Q 044554 329 VYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSG 408 (829)
Q Consensus 329 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsG 408 (829)
|+|++.+...... . .....+++++.+++.+..++.+ +.||||||||++||++|+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432110 1 1123578899999987777654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 409 LDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 409 LD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
||+.++..+.+.|++++++ |+||+++.|+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999999999999764 8999888764
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.3e-30 Score=298.59 Aligned_cols=180 Identities=23% Similarity=0.357 Sum_probs=144.0
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC---
Confidence 68899999872 35799999999999999999999999999999999997654 3699999873
Q ss_pred ccccccceeEEecCCCCCCCCCHHHHHHHhhh-h-----------cCCCC-C----------------CHHHHHHHHHHH
Q 044554 307 QETFTCISGYCEQNDIHSPNVTVYESLLYSAW-L-----------RLPPE-V----------------DSQTRKMFIEEV 357 (829)
Q Consensus 307 ~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~-l-----------r~~~~-~----------------~~~~~~~~v~~v 357 (829)
+.++|++|++.+++.+||+|++.++.. . ..+.. . ...+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 248999999888899999999987521 0 00000 0 001223567889
Q ss_pred HHHcCCccch-hhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 358 MELVELNTLR-KALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 358 l~~l~L~~~~-~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
++.+|+.+.. +.. +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.|||++.|
T Consensus 139 l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997643 333 357999999999999999999999999999999999999999999864 5788876655
Q ss_pred c
Q 044554 437 R 437 (829)
Q Consensus 437 ~ 437 (829)
+
T Consensus 211 d 211 (530)
T PRK15064 211 D 211 (530)
T ss_pred C
Confidence 3
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=3.4e-30 Score=329.18 Aligned_cols=198 Identities=22% Similarity=0.378 Sum_probs=155.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEc-Cee
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAIS-GYP 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~-G~~ 304 (829)
.++++||+++|+. ..++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 382 ~I~~~nVsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDT----------RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP--TEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCC----------CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC--CCCeEEEeCCcc
Confidence 6999999999842 1234699999999999999999999999999999999997665 37999994 666
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhh-cC---------CC-----C----------------------
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWL-RL---------PP-----E---------------------- 344 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~l-r~---------~~-----~---------------------- 344 (829)
+.. ..+++.+|||+|++.+++ .||+||+.++... +. +. +
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 543 345678999999998886 5999999986421 00 00 0
Q ss_pred --C---------CHHHHHHHHHHHHHHcCCccc-------hhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCC
Q 044554 345 --V---------DSQTRKMFIEEVMELVELNTL-------RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPT 406 (829)
Q Consensus 345 --~---------~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPT 406 (829)
. +.....+.++++++.+++.+. .||.+|.. ...||||||||++|||||+++|+||+|||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0 000112346777777776554 35566654 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 407 SGLDARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 407 sGLD~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
|+||+.++..+.+.|+++.+ +|+|+|++.|+
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHr 639 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 99999999999999999975 58999766654
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1.2e-29 Score=298.95 Aligned_cols=180 Identities=25% Similarity=0.353 Sum_probs=143.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.|. +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--
Confidence 589999999882 136799999999999999999999999999999999997654 3699988742
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhh-hc------------CCCCCC--------------------HHHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAW-LR------------LPPEVD--------------------SQTRKM 352 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~-lr------------~~~~~~--------------------~~~~~~ 352 (829)
+.+|||+|++.+++.+||.||+.++.. .+ .....+ ..+..+
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 358999999988899999999987531 00 000000 001134
Q ss_pred HHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 044554 353 FIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVL 432 (829)
Q Consensus 353 ~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvl 432 (829)
+++++++.+|+.. .++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEE
Confidence 5778889999854 45543 5899999999999999999999999999999999999999999999863 4776
Q ss_pred EEEe
Q 044554 433 FLLK 436 (829)
Q Consensus 433 lll~ 436 (829)
++.|
T Consensus 215 iisH 218 (556)
T PRK11819 215 AVTH 218 (556)
T ss_pred EEeC
Confidence 5544
No 328
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=9.5e-30 Score=327.17 Aligned_cols=196 Identities=21% Similarity=0.236 Sum_probs=161.0
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++|+||+++|+. +.+.+|+|||++|+|||.+||+|+||||||||+++|.|..+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999999942 23579999999999999999999999999999999999764 36999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 374 (829)
+.. ..+|+.++||||++.+++ .||||||.... ..++ +.+.++++..+|.+. .|+.+|..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 764 346788999999999886 59999995321 1222 336777887777543 45666653
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcE
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQ 440 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~ 440 (829)
...||||||||++|||||+++|+||+||||||+||..+...|.+.|++.. +++|||++.| ++|+
T Consensus 1351 -G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~~DrIlvL~~G~ 1428 (1490)
T TIGR01271 1351 -GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLECQQFLVIEGSS 1428 (1490)
T ss_pred -CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 35799999999999999999999999999999999999999999999864 4789865544 3578
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
++.+|++
T Consensus 1429 ivE~g~p 1435 (1490)
T TIGR01271 1429 VKQYDSI 1435 (1490)
T ss_pred EEEeCCH
Confidence 8877776
No 329
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.7e-30 Score=251.02 Aligned_cols=202 Identities=25% Similarity=0.361 Sum_probs=165.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcC-e
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG-Y 303 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G-~ 303 (829)
..+..+||+.++ +...+|+|+|+++.|||+-+|+|||||||||++++|+|...+ ..|++.++| .
T Consensus 4 ~iL~~~~vsVsF-------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~f~g~~ 68 (249)
T COG4674 4 IILYLDGVSVSF-------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVLFDGDT 68 (249)
T ss_pred ceEEEeceEEEE-------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEEEcCch
Confidence 458899999887 457899999999999999999999999999999999997654 369999999 5
Q ss_pred ecCcc----ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC------CCCCHHHHHHHHHHHHHHcCCccchhhhccC
Q 044554 304 PKKQE----TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP------PEVDSQTRKMFIEEVMELVELNTLRKALVGL 373 (829)
Q Consensus 304 ~~~~~----~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~------~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~ 373 (829)
++.+. --+..||-=+|.+..|..+||+|||..+.....+ .... .+.+++++++++..||.+.++...+
T Consensus 69 dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~-~~e~~ride~La~igL~~~~~~~A~- 146 (249)
T COG4674 69 DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLR-AEERRRIDELLATIGLGDERDRLAA- 146 (249)
T ss_pred hhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcC-hhHHHHHHHHHHHcccchhhhhhhh-
Confidence 54331 1245688899999999999999999987542211 1112 2334679999999999999998765
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE----------------EEec
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLF----------------LLKR 437 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvll----------------ll~~ 437 (829)
.||-||||++.|++-++.+|++|+||||++|+-.....+.-++|+.++. .++|++ +||
T Consensus 147 ----~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh- 220 (249)
T COG4674 147 ----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVTVLH- 220 (249)
T ss_pred ----hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeEEEe-
Confidence 6999999999999999999999999999999999999999999999986 456533 454
Q ss_pred CcEEEEEcCCCC
Q 044554 438 GGQEIYVGPLGE 449 (829)
Q Consensus 438 ~G~~vy~G~~~~ 449 (829)
+|.+...|+.++
T Consensus 221 ~G~VL~EGsld~ 232 (249)
T COG4674 221 EGSVLAEGSLDE 232 (249)
T ss_pred ccceeecccHHH
Confidence 588888887643
No 330
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=4e-29 Score=294.57 Aligned_cols=174 Identities=22% Similarity=0.293 Sum_probs=146.9
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|+++.+. +. .|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++
T Consensus 339 ~~l~~~~ls~~~~-------------~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~--- 399 (590)
T PRK13409 339 TLVEYPDLTKKLG-------------DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE--- 399 (590)
T ss_pred eEEEEcceEEEEC-------------CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe---
Confidence 3589999998872 22 48999999999999999999999999999999997654 36888875
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..++.+ ..||||||
T Consensus 400 -------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~ 459 (590)
T PRK13409 400 -------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGEL 459 (590)
T ss_pred -------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHH
Confidence 1489999998888899999999875321 111 124688999999988777765 58999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+||+++.|+
T Consensus 460 QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD 513 (590)
T PRK13409 460 QRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513 (590)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999875 8899777654
No 331
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=3.5e-29 Score=294.95 Aligned_cols=180 Identities=26% Similarity=0.352 Sum_probs=140.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++++. +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 67 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPG-- 67 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--
Confidence 489999999882 135799999999999999999999999999999999997654 3689988751
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhh-cC-----------CCCCCHHH---------------------HHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWL-RL-----------PPEVDSQT---------------------RKM 352 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~l-r~-----------~~~~~~~~---------------------~~~ 352 (829)
+.+||++|++.+++.+||+||+.++... +. ......+. ...
T Consensus 68 ------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred ------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 3589999999888999999999875321 00 00000100 113
Q ss_pred HHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 044554 353 FIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVL 432 (829)
Q Consensus 353 ~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvl 432 (829)
+++++++.+++.. .+.. ++.||||||||++||++|+.+|++|+|||||++||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4556677777743 3443 3589999999999999999999999999999999999999999999876 34776
Q ss_pred EEEe
Q 044554 433 FLLK 436 (829)
Q Consensus 433 lll~ 436 (829)
++.|
T Consensus 213 iisH 216 (552)
T TIGR03719 213 AVTH 216 (552)
T ss_pred EEeC
Confidence 5544
No 332
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.96 E-value=3.7e-29 Score=259.68 Aligned_cols=170 Identities=18% Similarity=0.162 Sum_probs=131.8
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEE-EcCeecCccccccceeEEecCCCCCCCCCHHHH
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIA-ISGYPKKQETFTCISGYCEQNDIHSPNVTVYES 332 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~-i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 332 (829)
+|+|||+++++||+++|+||||||||||+|+|+|..++ .+|+|. ++|... .+.|+..+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 79999999999999999999999999999999997654 368886 666432 12345567889999999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHH
Q 044554 333 LLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412 (829)
Q Consensus 333 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~ 412 (829)
+.+.+.... .+.++. .+.+.+.+++....++.+ +.||+|||||++||++|+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765331 222221 234455677777777655 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEE----------------EEEecCcEEEEEcCCC
Q 044554 413 AAAIFMRTVRNTVDTGRTVL----------------FLLKRGGQEIYVGPLG 448 (829)
Q Consensus 413 ~~~~i~~~l~~l~~~g~tvl----------------lll~~~G~~vy~G~~~ 448 (829)
++..+.+.+.+..+ +++++ +++ ++|++++.|+..
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~~~~~~~d~i~~l-~~G~i~~~~~~~ 188 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPRLIKEHCHAFGVL-LHGKITMCEDLA 188 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHHHHHHhcCeeEEE-ECCeEEEeCCHH
Confidence 99999998865443 34553 344 468899888873
No 333
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.96 E-value=2.3e-29 Score=301.29 Aligned_cols=185 Identities=19% Similarity=0.270 Sum_probs=146.7
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|++.+++
T Consensus 450 ~~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~~~-- 513 (659)
T TIGR00954 450 NGIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTKPA-- 513 (659)
T ss_pred CeEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEeecC--
Confidence 3599999999762 234799999999999999999999999999999999997553 258887753
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCC----CCCCCC
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLP----GLNGLS 380 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~----~~~~LS 380 (829)
++.++||+|++.+++. |++||+.++...+.... .+...+.++++++.+++.+..++..|.. ....||
T Consensus 514 ------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LS 584 (659)
T TIGR00954 514 ------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS 584 (659)
T ss_pred ------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCC
Confidence 3568999999987766 99999988643211000 0011234678899999987665532211 135799
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||||++|||+|+++|++++|||||||||+.++..+.+.+++ .|+|++++.|+
T Consensus 585 gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~ 638 (659)
T TIGR00954 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHR 638 (659)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCc
Confidence 9999999999999999999999999999999999999998876 38999999875
No 334
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=302.16 Aligned_cols=209 Identities=27% Similarity=0.406 Sum_probs=177.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..+..+|++..+.. .++ +++++|+.|++||+.++.|+|||||||++|+|.|..++ .+|++.++|.+
T Consensus 563 ~~~~~~~L~k~y~~-----------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~--t~G~a~i~g~~ 628 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG-----------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP--TSGEALIKGHD 628 (885)
T ss_pred ceEEEcceeeeecc-----------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC--CcceEEEecCc
Confidence 45888899888742 112 99999999999999999999999999999999997664 36999999998
Q ss_pred cCc----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 305 KKQ----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 305 ~~~----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
... ...++.+||+||.|.+.+.+|.||+|.+.+++|. .+..+-++.++++++.++|.+..|+.++ .+|
T Consensus 629 i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~yS 700 (885)
T KOG0059|consen 629 ITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYS 700 (885)
T ss_pred cccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchh-----hCC
Confidence 753 1256779999999999999999999999999884 3444555669999999999999998865 699
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEc
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVG 445 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G 445 (829)
||+|||+++|.+|+.+|++++|||||+|+||.+++.+.++++++.++|+.+++..| .+|+..-.|
T Consensus 701 gG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciG 780 (885)
T KOG0059|consen 701 GGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIG 780 (885)
T ss_pred CcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEec
Confidence 99999999999999999999999999999999999999999999998877744222 368999999
Q ss_pred CCCCCchhhHHHHh
Q 044554 446 PLGEHSSHLIKYFE 459 (829)
Q Consensus 446 ~~~~~~~~~~~~f~ 459 (829)
++ +++...|.
T Consensus 781 s~----q~LKsrfG 790 (885)
T KOG0059|consen 781 SP----QELKSRYG 790 (885)
T ss_pred Ch----HHHHhhcC
Confidence 86 56665553
No 335
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.4e-29 Score=292.89 Aligned_cols=172 Identities=20% Similarity=0.318 Sum_probs=141.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 599999999872 35699999999999999999999999999999999997654 3699998873
Q ss_pred CccccccceeEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCCCCCHH
Q 044554 306 KQETFTCISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~--~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~~LSgG 382 (829)
+.+||++|+.. +.+.+||+|++.+.. .+ . ..++.++++++.+++. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 35899999863 456799999986421 11 1 1124578899999984 5566554 589999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++.|
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsH 493 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSH 493 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeC
Confidence 999999999999999999999999999999999999999886 348766554
No 336
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.7e-30 Score=274.63 Aligned_cols=200 Identities=27% Similarity=0.425 Sum_probs=162.8
Q ss_pred CCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcC
Q 044554 223 EPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG 302 (829)
Q Consensus 223 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G 302 (829)
.+..+.|+|++|.|. .++++|+++|+.+++|+.+|++||||+||||++++|-...+. .+|.|.+||
T Consensus 259 ~~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~--~sG~I~id~ 324 (497)
T COG5265 259 RLGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV--NSGSITIDG 324 (497)
T ss_pred ccceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC--cCceEEEcc
Confidence 355699999999984 457899999999999999999999999999999999997764 379999999
Q ss_pred eecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHH-----HHHHHHHcCCccchhhhccCC
Q 044554 303 YPKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMF-----IEEVMELVELNTLRKALVGLP 374 (829)
Q Consensus 303 ~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~-----v~~vl~~l~L~~~~~~~vg~~ 374 (829)
+++.. ...|+.+|.||||..++ +-|...|+.|+. ...+.+++.+. +...++ .+.+-.|+.||..
T Consensus 325 qdir~vtq~slR~aIg~VPQDtvLF-NDti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vger 396 (497)
T COG5265 325 QDIRDVTQQSLRRAIGIVPQDTVLF-NDTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGER 396 (497)
T ss_pred hhHHHhHHHHHHHHhCcCcccceeh-hhhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchh
Confidence 98643 45788899999998876 469999999873 22334443322 222333 3456678889887
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeE---------------EEEEecCc
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTV---------------LFLLKRGG 439 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tv---------------llll~~~G 439 (829)
+. .|||||||||+|||+++.+|+||+|||.||+||..+.++|...|++..+ |+|. ++++ ++|
T Consensus 397 gl-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~-~rttlviahrlsti~~adeiivl-~~g 473 (497)
T COG5265 397 GL-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRLSTIIDADEIIVL-DNG 473 (497)
T ss_pred ee-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC-CCeEEEEeehhhhccCCceEEEe-eCC
Confidence 66 4999999999999999999999999999999999999999999999874 6665 3444 578
Q ss_pred EEEEEcCC
Q 044554 440 QEIYVGPL 447 (829)
Q Consensus 440 ~~vy~G~~ 447 (829)
+++.-|.-
T Consensus 474 ~i~erg~h 481 (497)
T COG5265 474 RIVERGTH 481 (497)
T ss_pred EEEecCcH
Confidence 99888863
No 337
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5e-29 Score=244.05 Aligned_cols=176 Identities=24% Similarity=0.331 Sum_probs=152.0
Q ss_pred CCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc--cccccceeEEecCCCCCCC
Q 044554 249 EDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ--ETFTCISGYCEQNDIHSPN 326 (829)
Q Consensus 249 ~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~--~~~~~~~~yv~Q~~~~~~~ 326 (829)
.+++.++.++||++.+||.+-|.||||||||||||+|+|...+ ..|+|.++|.++.. +.+++.+-|+..++.+-+.
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p--~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP--DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC--CCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 3567899999999999999999999999999999999997654 26999999988754 2245667888888888899
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCC
Q 044554 327 VTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPT 406 (829)
Q Consensus 327 lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPT 406 (829)
+||.|||.|-.+.... .+ .+.+.+.++.+||.+..|..++ .||-||||||+|||-.++.+++.+||||+
T Consensus 90 LTa~ENL~F~~~~~~~--~~----~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 90 LTALENLHFWQRFHGS--GN----AATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred hhHHHHHHHHHHHhCC--Cc----hhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 9999999998765533 11 1347899999999999999875 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 407 SGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 407 sGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
++||......+-.++...+.+|..|++-.|.
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq 189 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 9999999999999999988888777776653
No 338
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.8e-29 Score=257.79 Aligned_cols=193 Identities=26% Similarity=0.378 Sum_probs=156.1
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc--cccccceeEEe-cCCCCCCCCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ--ETFTCISGYCE-QNDIHSPNVT 328 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~--~~~~~~~~yv~-Q~~~~~~~lT 328 (829)
..+++|+||+|++|++++++|||||||||+||+|+|...+ .+|.|.++|...-+ +.+-+.+++|+ |.-.+.-.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p--~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP--TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc--CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 4589999999999999999999999999999999997654 36999999986532 23445567766 4444555566
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCC
Q 044554 329 VYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSG 408 (829)
Q Consensus 329 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsG 408 (829)
+.|.+.....+. +++.++-+++.+.+.+.|++++..+..+ +.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 777777654433 5666777788999999999998877765 68999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEE---------------EEecCcEEEEEcCCCCCchhhHHHH
Q 044554 409 LDARAAAIFMRTVRNTVDT-GRTVLF---------------LLKRGGQEIYVGPLGEHSSHLIKYF 458 (829)
Q Consensus 409 LD~~~~~~i~~~l~~l~~~-g~tvll---------------ll~~~G~~vy~G~~~~~~~~~~~~f 458 (829)
||..++..|.+.+++..++ +.||++ ++.+.|+++|.|+. +.+.+-|
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l----~~l~~~f 248 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL----AQLQEQF 248 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccH----HHHHHHh
Confidence 9999999999999998764 788832 33367999999997 3444444
No 339
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=6.4e-29 Score=264.43 Aligned_cols=169 Identities=22% Similarity=0.287 Sum_probs=137.4
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEE-----------EcCeecCcc--c-c--cccee
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIA-----------ISGYPKKQE--T-F--TCISG 315 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~-----------i~G~~~~~~--~-~--~~~~~ 315 (829)
+.+|+|+| .+++||+++|+||||||||||||+|+|..++. +|+|. ++|.+.... . . ...++
T Consensus 14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~--~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 90 (255)
T cd03236 14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN--LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVI 90 (255)
T ss_pred chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC--CceEeeccccchhhhhccCchhhhhhHHhhhccccee
Confidence 35999999 59999999999999999999999999976542 68885 778765321 1 1 12368
Q ss_pred EEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhh
Q 044554 316 YCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVA 395 (829)
Q Consensus 316 yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~ 395 (829)
|++|+....+ .++.+++.+.. + ..+..+.++++++.+++.+..+..+ +.||||||||++||++|+.
T Consensus 91 ~~~~~~~~~~-~~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 91 VKPQYVDLIP-KAVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALAR 156 (255)
T ss_pred eecchhccCc-hHHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHh
Confidence 9999877777 48888887642 1 1223355789999999987766543 5799999999999999999
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 396 NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 396 ~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+|++++|||||+|||+.++..+.+.+++++++|+||+++.|+
T Consensus 157 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd 198 (255)
T cd03236 157 DADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198 (255)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 999999999999999999999999999998888999888764
No 340
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1.3e-28 Score=290.19 Aligned_cols=177 Identities=23% Similarity=0.361 Sum_probs=143.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~- 386 (556)
T PRK11819 323 KVIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGET- 386 (556)
T ss_pred eEEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc-
Confidence 3599999999872 35799999999999999999999999999999999997654 3699988532
Q ss_pred cCccccccceeEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCCHH
Q 044554 305 KKQETFTCISGYCEQND-IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLSTE 382 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~-~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LSgG 382 (829)
..+||++|+. .+++.+||+||+.+....+. .... ....+++++.+++.+ ..++.+ ..||||
T Consensus 387 -------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 449 (556)
T PRK11819 387 -------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGG 449 (556)
T ss_pred -------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHH
Confidence 1489999986 67788999999988643221 1111 123457899999964 455544 489999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++.|+
T Consensus 450 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd 501 (556)
T PRK11819 450 ERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHD 501 (556)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECC
Confidence 9999999999999999999999999999999999999999872 3 77777653
No 341
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.9e-28 Score=255.10 Aligned_cols=173 Identities=26% Similarity=0.391 Sum_probs=140.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCC-ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 226 SITFDDITYSVDMPQEMINPGVSED-QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
-++.+||+..+..... .... ...+++||||++++||+++|+|+||||||||-|+|.|..++ .+|+|.++|.+
T Consensus 4 ll~v~~l~k~f~~~~~-----~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p--t~G~i~f~g~~ 76 (268)
T COG4608 4 LLEVKNLKKYFPVGKG-----FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGEILFEGKD 76 (268)
T ss_pred eEEEeccEEEEecccc-----cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC--CCceEEEcCcc
Confidence 4789999999865321 1112 36899999999999999999999999999999999998765 37999999987
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCCHHH
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LSgGe 383 (829)
+.... ++++.+++.++++.+|+.. ..++ .++++||||
T Consensus 77 i~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~r-----yPhelSGGQ 114 (268)
T COG4608 77 ITKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYR-----YPHELSGGQ 114 (268)
T ss_pred hhhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhc-----CCcccCchh
Confidence 54211 3345567899999999764 3333 357999999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec---------------CcEEEEEcCC
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR---------------GGQEIYVGPL 447 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~---------------~G~~vy~G~~ 447 (829)
|||+.|||||+.+|+++++|||||.||...+.+|+++|+++.++ |.|.+++.|+ .|+++..|+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~ 194 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPT 194 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCH
Confidence 99999999999999999999999999999999999999999865 8888666553 4677777765
No 342
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=2.2e-28 Score=288.19 Aligned_cols=176 Identities=20% Similarity=0.339 Sum_probs=143.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECCc--
Confidence 589999999872 35799999999999999999999999999999999997654 3699988542
Q ss_pred CccccccceeEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCCHHH
Q 044554 306 KQETFTCISGYCEQND-IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~-~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LSgGe 383 (829)
..+||++|+. .+++.+||.|++.+...... .... ....+++++.+++.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 47788999999988643211 1111 123567899999964 455544 4799999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. .|||++.|+
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd 499 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHD 499 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCC
Confidence 999999999999999999999999999999999999999873 377777653
No 343
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=1.3e-28 Score=317.17 Aligned_cols=190 Identities=21% Similarity=0.326 Sum_probs=149.3
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|++|.++. .+++.+|+|+|+++++||.++|+||||||||||+++|.|..++ .+|++.
T Consensus 613 ~~I~~~~vsF~y~~----------~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~----- 675 (1495)
T PLN03232 613 PAISIKNGYFSWDS----------KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV----- 675 (1495)
T ss_pred CcEEEEeeEEEcCC----------CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE-----
Confidence 36999999999842 1235699999999999999999999999999999999997653 234431
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCCCCC
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLPGLN 377 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~~~ 377 (829)
..++.++||+|++.+++ .||||||.|+. ..++ ++.+++++..+|.+ -.+|.+|+.|.
T Consensus 676 ----~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~------~~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~- 739 (1495)
T PLN03232 676 ----VIRGSVAYVPQVSWIFN-ATVRENILFGS------DFES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGV- 739 (1495)
T ss_pred ----EecCcEEEEcCcccccc-ccHHHHhhcCC------ccCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCc-
Confidence 24567999999998875 69999999973 1222 23556666665543 34577887654
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEEe--------------cCcEEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRT-VRNTVDTGRTVLFLLK--------------RGGQEI 442 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~-l~~l~~~g~tvllll~--------------~~G~~v 442 (829)
.||||||||++||||+.++|+|++||||||+||+.+++++++. ++.. .+++|+|++.| ++|+++
T Consensus 740 ~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPLMDRIILVSEGMIK 818 (1495)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHhCCEEEEEeCCEEE
Confidence 7999999999999999999999999999999999999988765 4543 35788855443 479999
Q ss_pred EEcCCC
Q 044554 443 YVGPLG 448 (829)
Q Consensus 443 y~G~~~ 448 (829)
..|+.+
T Consensus 819 ~~Gt~~ 824 (1495)
T PLN03232 819 EEGTFA 824 (1495)
T ss_pred EecCHH
Confidence 999864
No 344
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2e-28 Score=243.91 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=154.7
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccc---cccceeEEecCCC--CC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQET---FTCISGYCEQNDI--HS 324 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~---~~~~~~yv~Q~~~--~~ 324 (829)
.++++|+++|++|..|+.+.|+|.||||||||+|+|+|...+ .+|.|.++|.++++.. ....++-|+||+. ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~--t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP--TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc--CCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 467899999999999999999999999999999999997654 3799999999986543 2235677999974 58
Q ss_pred CCCCHHHHHHHhhhhcCCCCCC---HHHHHHHHHHHHHH--cCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCc
Q 044554 325 PNVTVYESLLYSAWLRLPPEVD---SQTRKMFIEEVMEL--VELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSI 399 (829)
Q Consensus 325 ~~lTV~E~l~f~a~lr~~~~~~---~~~~~~~v~~vl~~--l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~i 399 (829)
+++|+.||+..+..-....... .+.+++...+-++. +||++..++.+| -|||||||-+++++|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 9999999999876431111222 12333444455555 456777777766 4999999999999999999999
Q ss_pred ceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEE----------------EEEecCcEEEEEcCCCC----CchhhHHHH
Q 044554 400 IFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVL----------------FLLKRGGQEIYVGPLGE----HSSHLIKYF 458 (829)
Q Consensus 400 L~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvl----------------lll~~~G~~vy~G~~~~----~~~~~~~~f 458 (829)
|+|||-|++|||.++..+++.-.++.++ +.|.+ ++| ++|++|.+=.-++ .-.+++..|
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImL-h~G~IvlDv~g~~k~~L~v~dli~~F 248 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIML-HSGKIVLDVTGEEKASLTVLDLIQMF 248 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEE-eCCeEEEEcccccccCCcHHHHHHHH
Confidence 9999999999999999999999998765 55653 344 4688887643322 123455666
Q ss_pred hcC
Q 044554 459 EGI 461 (829)
Q Consensus 459 ~~~ 461 (829)
+.+
T Consensus 249 ~~~ 251 (263)
T COG1101 249 EKI 251 (263)
T ss_pred HHH
Confidence 544
No 345
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=1e-28 Score=237.63 Aligned_cols=134 Identities=35% Similarity=0.539 Sum_probs=118.8
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc---cccccceeEEecCCCCCCCCCHHH
Q 044554 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ---ETFTCISGYCEQNDIHSPNVTVYE 331 (829)
Q Consensus 255 L~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E 331 (829)
|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999999999999997654 47999999998865 345678999999999999999999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCC
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTS 407 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTs 407 (829)
| ...+.++++++.+++.+..++.++... +.||+|||||++||++|+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 122447899999999998888876543 6899999999999999999999999999996
No 346
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=3.2e-28 Score=313.87 Aligned_cols=189 Identities=21% Similarity=0.347 Sum_probs=151.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeE-EEEEEcCee
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYIT-GNIAISGYP 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~-G~i~i~G~~ 304 (829)
.++++|++|.++. .+++.+|+|+|+++++||+++|+||||||||||+++|.|..++ .+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~----------~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I~l---- 677 (1622)
T PLN03130 614 AISIKNGYFSWDS----------KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP--RSDASVVI---- 677 (1622)
T ss_pred ceEEEeeEEEccC----------CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc--CCCceEEE----
Confidence 5999999999852 1235699999999999999999999999999999999997653 35 77764
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCCCCC
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLPGLN 377 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~~~ 377 (829)
++.++||+|++.+++ .||||||.|+.. .++ ++.+++++..+|.+. .+|.+|..| .
T Consensus 678 ------~~~Iayv~Q~p~Lfn-gTIreNI~fg~~------~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~ 739 (1622)
T PLN03130 678 ------RGTVAYVPQVSWIFN-ATVRDNILFGSP------FDP----ERYERAIDVTALQHDLDLLPGGDLTEIGERG-V 739 (1622)
T ss_pred ------cCeEEEEcCccccCC-CCHHHHHhCCCc------ccH----HHHHHHHHHhCcHHHHHhCCCcccccccCCC-C
Confidence 346899999998875 799999999732 222 346677777666442 367788765 4
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEEe--------------cCcEEE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR-TVRNTVDTGRTVLFLLK--------------RGGQEI 442 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~-~l~~l~~~g~tvllll~--------------~~G~~v 442 (829)
.||||||||++||||+.++|+|++||||||+||+.+++++++ .++... +|+|+|++.| ++|+++
T Consensus 740 ~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~ 818 (1622)
T PLN03130 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIK 818 (1622)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEE
Confidence 799999999999999999999999999999999999998875 556553 5788855443 479999
Q ss_pred EEcCCCC
Q 044554 443 YVGPLGE 449 (829)
Q Consensus 443 y~G~~~~ 449 (829)
..|+.++
T Consensus 819 e~Gt~~e 825 (1622)
T PLN03130 819 EEGTYEE 825 (1622)
T ss_pred EeCCHHH
Confidence 9998643
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=4.8e-28 Score=289.38 Aligned_cols=176 Identities=24% Similarity=0.354 Sum_probs=142.1
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||++.| +++.+|+|+|+++++|++++|+|||||||||||++|+|..++ .+|+|.+ |.+
T Consensus 318 ~~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~ 381 (635)
T PRK11147 318 IVFEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTK 381 (635)
T ss_pred ceEEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCC
Confidence 358999999987 235799999999999999999999999999999999997654 3689988 432
Q ss_pred cCccccccceeEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCCCCCHH
Q 044554 305 KKQETFTCISGYCEQND-IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~-~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~~LSgG 382 (829)
. .+||++|+. .+++.+||.|++.+..... .... ....+.++++.+++. +..++.+ +.||||
T Consensus 382 ~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 444 (635)
T PRK11147 382 L-------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPV-----KALSGG 444 (635)
T ss_pred c-------EEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChh-----hhCCHH
Confidence 1 489999975 5788999999998753210 0111 123477889999985 4556554 479999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|||||+||++|+.+|++|||||||+|||..+...+.+.++++ +.|||++.|
T Consensus 445 ekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSH 495 (635)
T PRK11147 445 ERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSH 495 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEEC
Confidence 999999999999999999999999999999999999999876 347766554
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6e-28 Score=288.17 Aligned_cols=182 Identities=21% Similarity=0.382 Sum_probs=144.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.+.++||++.| +++.+|+|+|++|++||+++|+||||||||||||+|+|..++ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 58999999987 235799999999999999999999999999999999997654 3689988641
Q ss_pred CccccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCCHH
Q 044554 306 KQETFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLSTE 382 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LSgG 382 (829)
..+||++|+. .+.+..|+.+++.- .. + ....+.++++++.+++.. ..+..+ +.||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~-~-----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA-P-----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC-c-----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2489999974 34456788877641 11 1 112345788999999963 556654 479999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEE-EEcC
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEI-YVGP 446 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~v-y~G~ 446 (829)
|||||+||++|+.+|++|+|||||+|||..+...+.+.|+++ .| |||++.| ++|+++ |.|+
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~ 511 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGD 511 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCC
Confidence 999999999999999999999999999999999999999987 34 7754333 367876 6776
Q ss_pred C
Q 044554 447 L 447 (829)
Q Consensus 447 ~ 447 (829)
.
T Consensus 512 ~ 512 (638)
T PRK10636 512 L 512 (638)
T ss_pred H
Confidence 5
No 349
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=7.1e-28 Score=234.75 Aligned_cols=126 Identities=30% Similarity=0.497 Sum_probs=112.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|+++.+. +..+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~--- 62 (144)
T cd03221 1 IELENLSKTYG-------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST--- 62 (144)
T ss_pred CEEEEEEEEEC-------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe---
Confidence 46789998872 23699999999999999999999999999999999997654 3799999984
Q ss_pred ccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHH
Q 044554 307 QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKR 386 (829)
Q Consensus 307 ~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqR 386 (829)
+.++|++| ||+|||||
T Consensus 63 -----~~i~~~~~-----------------------------------------------------------lS~G~~~r 78 (144)
T cd03221 63 -----VKIGYFEQ-----------------------------------------------------------LSGGEKMR 78 (144)
T ss_pred -----EEEEEEcc-----------------------------------------------------------CCHHHHHH
Confidence 35789988 89999999
Q ss_pred HHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 387 LTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 387 lsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
++|||+|+.+|++++|||||+|||+.++..+.+.++++ ++|++++.|+
T Consensus 79 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~ 126 (144)
T cd03221 79 LALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHD 126 (144)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 99999999999999999999999999999999999986 4688888764
No 350
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.95 E-value=8.2e-28 Score=257.62 Aligned_cols=211 Identities=22% Similarity=0.302 Sum_probs=171.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-CCC--eeEEEEEEcC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK-TSG--YITGNIAISG 302 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~-~~g--~~~G~i~i~G 302 (829)
-+.++|++..+... .+.+.++++|||++++||.+||+|+||||||-..+.+.|.. +++ ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 48999999988542 35688999999999999999999999999999999888853 333 3368999999
Q ss_pred eecCc---cccc----cceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccC
Q 044554 303 YPKKQ---ETFT----CISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGL 373 (829)
Q Consensus 303 ~~~~~---~~~~----~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~ 373 (829)
.+.-. ...+ .+|++++|++ .+.|-.|+.+.+.-..++. ...+.++.++++-++++..|+.+-..++-..
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 87522 1222 3689999998 4567788887776654443 4566777778888999999998877776544
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------c
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------R 437 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~ 437 (829)
+++|||||||||.||+||+.+|++||.||||++||..-+.+|+++|+++.++ |..++++.| +
T Consensus 155 --PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~ 232 (534)
T COG4172 155 --PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQ 232 (534)
T ss_pred --CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEe
Confidence 4689999999999999999999999999999999999999999999999765 888855433 4
Q ss_pred CcEEEEEcCCCC
Q 044554 438 GGQEIYVGPLGE 449 (829)
Q Consensus 438 ~G~~vy~G~~~~ 449 (829)
.|+++..|+.+.
T Consensus 233 ~G~ivE~~~t~~ 244 (534)
T COG4172 233 HGEIVETGTTET 244 (534)
T ss_pred ccEEeecCcHHH
Confidence 699999998643
No 351
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=6.5e-28 Score=242.19 Aligned_cols=140 Identities=24% Similarity=0.350 Sum_probs=115.5
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCH
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
..+.+|+|+|+++++||+++|+||||||||||||++.+ + +|++.++|.... ..++.++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~--~----~G~v~~~~~~~~--~~~~~~~~~~q---------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY--A----SGKARLISFLPK--FSRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh--c----CCcEEECCcccc--cccccEEEEhH----------
Confidence 35789999999999999999999999999999999974 2 578888876321 11234678776
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-hhhhccCCCCCCCCHHHHHHHHHHHHhhhC--CCcceecCCC
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-RKALVGLPGLNGLSTEKRKRLTIAVELVAN--PSIIFMDEPT 406 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~~LSgGerqRlsIa~aL~~~--p~iL~LDEPT 406 (829)
.+.++.+++... .+.. ++.||||||||++||++|+.+ |++++|||||
T Consensus 68 -------------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt 117 (176)
T cd03238 68 -------------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPS 117 (176)
T ss_pred -------------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence 134566777642 3443 358999999999999999999 9999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 407 SGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 407 sGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+|||+.++..+.+.|+++++.|+||+++.|+
T Consensus 118 ~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 118 TGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 9999999999999999998789999998864
No 352
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=1e-27 Score=240.91 Aligned_cols=120 Identities=28% Similarity=0.403 Sum_probs=106.0
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCH
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
+++.+++++ +++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+ ++|++|+..
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~---------i~~~~q~~~------- 71 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP--NGDNDEWDGIT---------PVYKPQYID------- 71 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCcEEEECCEE---------EEEEcccCC-------
Confidence 346788885 89999999999999999999999999997654 36999999853 678887431
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCC
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGL 409 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGL 409 (829)
||||||||++|||+|+.+|++++|||||+||
T Consensus 72 -------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 72 -------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCC-CeEEEEEec
Q 044554 410 DARAAAIFMRTVRNTVDTG-RTVLFLLKR 437 (829)
Q Consensus 410 D~~~~~~i~~~l~~l~~~g-~tvllll~~ 437 (829)
|+.++..+.+.++++++++ .|++++.|+
T Consensus 103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 103 DIEQRLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 9999999999999998765 898888764
No 353
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2e-27 Score=283.68 Aligned_cols=179 Identities=21% Similarity=0.297 Sum_probs=135.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||++++ +++.+|+|||++|++|+++||+||||||||||||+|+|..++ .+|+|.++|..
T Consensus 2 i~i~nls~~~-------------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p--d~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRR-------------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA--DGGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEe-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCCC--
Confidence 6889999988 346799999999999999999999999999999999997654 36999998742
Q ss_pred ccccccceeEEecCCCCCCCCCHHHHHHHhh-----------------------hhcC-CCCCCHHHHHHHHHHHHHHcC
Q 044554 307 QETFTCISGYCEQNDIHSPNVTVYESLLYSA-----------------------WLRL-PPEVDSQTRKMFIEEVMELVE 362 (829)
Q Consensus 307 ~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a-----------------------~lr~-~~~~~~~~~~~~v~~vl~~l~ 362 (829)
.++|++|+.... ..|+.+.+.-.. .+.. .......+..++++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 267888764332 245554432110 0000 000001122346888999999
Q ss_pred Cc-cchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 363 LN-TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 363 L~-~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++ +.|||++.|+
T Consensus 138 l~~~~~~~~~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd 205 (638)
T PRK10636 138 FSNEQLERPV-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHD 205 (638)
T ss_pred CCchhhcCch-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 96 4566655 479999999999999999999999999999999999999999998875 4688776653
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=7.4e-27 Score=280.15 Aligned_cols=175 Identities=19% Similarity=0.287 Sum_probs=135.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|+++.|. +++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~- 571 (718)
T PLN03073 507 PIISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK- 571 (718)
T ss_pred ceEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc-
Confidence 3599999999882 234699999999999999999999999999999999997654 3688887652
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCCHHH
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LSgGe 383 (829)
..+||++|+. ...+++.++.........+. .+ .+.++++++.+++.+ ..+.. +..|||||
T Consensus 572 -------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGq 632 (718)
T PLN03073 572 -------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQ 632 (718)
T ss_pred -------eeEEEEeccc--cccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHH
Confidence 3589999975 34566666643321111111 11 234788999999974 44544 35899999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|||++||++|+.+|++|+|||||+|||..+...+++.+++. +| |||++.|
T Consensus 633 kqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSH 682 (718)
T PLN03073 633 KSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSH 682 (718)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEEC
Confidence 99999999999999999999999999999999998888765 34 8766554
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=1.2e-27 Score=281.98 Aligned_cols=165 Identities=26% Similarity=0.311 Sum_probs=134.0
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEE-----------EcCeecCcc-----cccccee
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIA-----------ISGYPKKQE-----TFTCISG 315 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~-----------i~G~~~~~~-----~~~~~~~ 315 (829)
..+|++++ .+++||+++|+||||||||||||+|+|..++. .|+|. ++|.++... ..+..++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~--~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 163 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC--CccccCCCcHHHHHHHhCChHHHHHHHHHhccCccee
Confidence 46999999 99999999999999999999999999976542 58886 888765321 1112345
Q ss_pred EEecCCCCCC---CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHH
Q 044554 316 YCEQNDIHSP---NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVE 392 (829)
Q Consensus 316 yv~Q~~~~~~---~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~a 392 (829)
+.+|.....| ..||+|++... +..+.++++++.++|.+..|+.+ ..||||||||++||++
T Consensus 164 ~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 164 HKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDI-----SELSGGELQRVAIAAA 226 (590)
T ss_pred ecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 5565433333 23999998631 12245789999999998888765 4799999999999999
Q ss_pred hhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 393 LVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 393 L~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|+.+|++++|||||++||+.++..+.+.|+++++ |+||+++.|+
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd 270 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHD 270 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 9999999999999999999999999999999988 9999888764
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=5.5e-27 Score=231.59 Aligned_cols=135 Identities=33% Similarity=0.576 Sum_probs=118.0
Q ss_pred EEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-
Q 044554 229 FDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ- 307 (829)
Q Consensus 229 ~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~- 307 (829)
++|+++.++ ++.+++++|+++++||+++|+|+||||||||+++|+|..++ ..|++.++|.+...
T Consensus 2 ~~~~~~~~~-------------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~ 66 (157)
T cd00267 2 IENLSFRYG-------------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKL 66 (157)
T ss_pred eEEEEEEeC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccC
Confidence 578888762 24699999999999999999999999999999999997654 37999999987542
Q ss_pred --cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 308 --ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 308 --~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
...++.++|++| ||+||||
T Consensus 67 ~~~~~~~~i~~~~q-----------------------------------------------------------lS~G~~~ 87 (157)
T cd00267 67 PLEELRRRIGYVPQ-----------------------------------------------------------LSGGQRQ 87 (157)
T ss_pred CHHHHHhceEEEee-----------------------------------------------------------CCHHHHH
Confidence 223456788888 9999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|++||++++.+|++++|||||+|||..++..+.+.++++.++++|++++.|+
T Consensus 88 r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 88 RVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999988777898888764
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.95 E-value=6e-27 Score=302.21 Aligned_cols=189 Identities=25% Similarity=0.416 Sum_probs=149.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~-----------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-----------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc--CCcEEEECC---
Confidence 6999999999841 234699999999999999999999999999999999997654 369999987
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-------cchhhhccCCCCCC
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-------TLRKALVGLPGLNG 378 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~~~~~~ 378 (829)
.++||+|++.++ +.||+||+.|+.. .++++ .+++++..++. +-.++.+|..+ ..
T Consensus 700 -------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~~~----~~~~~~~~~l~~~l~~~~~g~~t~ig~~g-~~ 760 (1522)
T TIGR00957 700 -------SVAYVPQQAWIQ-NDSLRENILFGKA------LNEKY----YQQVLEACALLPDLEILPSGDRTEIGEKG-VN 760 (1522)
T ss_pred -------EEEEEcCCcccc-CCcHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhcCCCCCceecCCC-CC
Confidence 379999998765 5899999998632 22221 23333333332 22345666653 57
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHH--HhCCCeEEEEEe--------------cCcEEE
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNT--VDTGRTVLFLLK--------------RGGQEI 442 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l--~~~g~tvllll~--------------~~G~~v 442 (829)
||||||||++||||++++|++++||||||+||+.++..+.+.+.+. ..+++|++++.| ++|+++
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~ 840 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKIS 840 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEE
Confidence 9999999999999999999999999999999999999999998753 235788865544 479999
Q ss_pred EEcCCCC
Q 044554 443 YVGPLGE 449 (829)
Q Consensus 443 y~G~~~~ 449 (829)
..|+.++
T Consensus 841 ~~g~~~~ 847 (1522)
T TIGR00957 841 EMGSYQE 847 (1522)
T ss_pred eeCCHHH
Confidence 9998643
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=6e-27 Score=227.21 Aligned_cols=209 Identities=21% Similarity=0.324 Sum_probs=166.7
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|++.++...... .......+++.|||+++.|+.+||+|.||||||||.|+|+|...+ .+|+|.+||++..
T Consensus 5 LeV~nLsKtF~~~~~l----f~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P--TsG~il~n~~~L~ 78 (267)
T COG4167 5 LEVRNLSKTFRYRTGL----FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGEILINDHPLH 78 (267)
T ss_pred hhhhhhhhhhhhhhhh----hhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC--CCceEEECCcccc
Confidence 5677777766432211 112345689999999999999999999999999999999997665 3799999999875
Q ss_pred ccc---cccceeEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCC
Q 044554 307 QET---FTCISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLS 380 (829)
Q Consensus 307 ~~~---~~~~~~yv~Q~~~--~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LS 380 (829)
-.+ ..+.+-.++||+. +.|.+.+.+-|... +++..+.+.++|.+++-+.++.+||-. .++-. ++-||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~P--L~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~la 151 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHMLA 151 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcch--hhhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhcC
Confidence 432 2356889999974 46677777777665 445567788889999999999999853 33332 46799
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeE----------------EEEEecCcEEEE
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTV----------------LFLLKRGGQEIY 443 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tv----------------llll~~~G~~vy 443 (829)
.||||||++||||+.+|+|++.||...+||...+.++.+++.++.++ |.+- ++++ ++|++|.
T Consensus 152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM-~EG~vvE 230 (267)
T COG4167 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVM-HEGEVVE 230 (267)
T ss_pred chhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEE-ecCceee
Confidence 99999999999999999999999999999999999999999999765 7654 5666 4799999
Q ss_pred EcCCCC
Q 044554 444 VGPLGE 449 (829)
Q Consensus 444 ~G~~~~ 449 (829)
.|.+.+
T Consensus 231 ~G~t~~ 236 (267)
T COG4167 231 RGSTAD 236 (267)
T ss_pred cCChhh
Confidence 998743
No 359
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=4.9e-26 Score=232.73 Aligned_cols=213 Identities=20% Similarity=0.296 Sum_probs=173.3
Q ss_pred eEEEEeeEEEEeCCcc----cc-------CCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCee
Q 044554 226 SITFDDITYSVDMPQE----MI-------NPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYI 294 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~----~~-------~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~ 294 (829)
.++++||+..+..+.. .+ ..........+|+||||++++||.++|+|+||||||||||+|+|..+| .
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P--t 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP--T 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC--C
Confidence 4788888888876531 10 011134567899999999999999999999999999999999997665 3
Q ss_pred EEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCC
Q 044554 295 TGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLP 374 (829)
Q Consensus 295 ~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~ 374 (829)
+|++.++|.-..-.. =.-.+.|++|.+||+.+-+.+. ..+.++.++.++++++.-+|.+..|..+
T Consensus 81 ~G~v~v~G~v~~li~---------lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVAPLIE---------LGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEehhhh---------cccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 799999997432111 1223567899999999876543 4567788889999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCc
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGG 439 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G 439 (829)
+.+|.|++-|++.|.+...+|+||++||-.+-.|+.=+++-.+.++++.++++|++++.| +.|
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHG 223 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCC
Confidence 589999999999999999999999999999999999999999999999888888855433 469
Q ss_pred EEEEEcCCCCCchhhHHHHhcC
Q 044554 440 QEIYVGPLGEHSSHLIKYFEGI 461 (829)
Q Consensus 440 ~~vy~G~~~~~~~~~~~~f~~~ 461 (829)
++.+.|.+ ++++++|+..
T Consensus 224 ~i~~~G~~----~~vi~~Y~~~ 241 (249)
T COG1134 224 QIRMEGSP----EEVIPAYEED 241 (249)
T ss_pred EEEEcCCH----HHHHHHHHHh
Confidence 99999997 5677777653
No 360
>PLN03211 ABC transporter G-25; Provisional
Probab=99.94 E-value=2.9e-27 Score=282.10 Aligned_cols=145 Identities=18% Similarity=0.332 Sum_probs=139.7
Q ss_pred cchhhhhhcCchhhhhccCCCCchhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHH
Q 044554 2 SEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSAL 81 (829)
Q Consensus 2 ~e~~~~~~~r~i~~kq~~~~fy~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~ 81 (829)
+.++....+|+||+|||+.++|++++|.+|++++|+|+.++.+++|++|+|||+||++++++||+|++++++++++++++
T Consensus 456 ~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~ 535 (659)
T PLN03211 456 NSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGL 535 (659)
T ss_pred HHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHHhhhccCCC
Q 044554 82 FRLVAATGRNMVVANTFGSFTLLLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIAVNEFLGNS 148 (829)
Q Consensus 82 f~~~aa~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~~NEf~~~~ 148 (829)
+.++++++||+..|+.+++++++++++|+||+|+ +||+||+|++|+||+.|||||++.|||.+.+
T Consensus 536 g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~ 600 (659)
T PLN03211 536 GLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGK 600 (659)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999997 7999999999999999999999999997643
No 361
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=1.3e-26 Score=276.95 Aligned_cols=177 Identities=24% Similarity=0.311 Sum_probs=132.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++++. ++.+|+|||+++++|++++|+||||||||||||+|+|...+ .+|+|.++|..
T Consensus 3 ~l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p--~~G~I~~~~~~- 66 (635)
T PRK11147 3 LISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL--DDGRIIYEQDL- 66 (635)
T ss_pred EEEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEeCCCC-
Confidence 488999999882 35799999999999999999999999999999999997654 36999987631
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHh------------------------------hhhc--CCCCCCHHHHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYS------------------------------AWLR--LPPEVDSQTRKMF 353 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~------------------------------a~lr--~~~~~~~~~~~~~ 353 (829)
.++|++|++......+|.+++..+ ..+. .. ..+..+..++
T Consensus 67 -------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~ 138 (635)
T PRK11147 67 -------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENR 138 (635)
T ss_pred -------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHH
Confidence 146677654333334555543211 0000 00 0000112346
Q ss_pred HHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 044554 354 IEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLF 433 (829)
Q Consensus 354 v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvll 433 (829)
++++++.+|+.. ++. +..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|||+
T Consensus 139 ~~~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvli 208 (635)
T PRK11147 139 INEVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIF 208 (635)
T ss_pred HHHHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEE
Confidence 788999999863 443 35899999999999999999999999999999999999999999999872 47766
Q ss_pred EEe
Q 044554 434 LLK 436 (829)
Q Consensus 434 ll~ 436 (829)
+.|
T Consensus 209 vsH 211 (635)
T PRK11147 209 ISH 211 (635)
T ss_pred EeC
Confidence 654
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=1.9e-26 Score=265.74 Aligned_cols=180 Identities=27% Similarity=0.372 Sum_probs=143.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.+ +.+.+++|+|+++.+|+.+||+|+||||||||||+|+|...+ .+|+|...+.
T Consensus 3 ~i~~~~ls~~~-------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~--~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY-------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee-------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC--CCCeEeecCC--
Confidence 48899999987 457899999999999999999999999999999999997654 2688876432
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhc-------------CCCC--------------CCHHHHHHHHHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLR-------------LPPE--------------VDSQTRKMFIEEVM 358 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr-------------~~~~--------------~~~~~~~~~v~~vl 358 (829)
.+++|++|+....+..||.|.+.-+..-. .+.. .+..+.+.+++.++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 24799999999999999999887653200 0000 00001124567778
Q ss_pred HHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 359 ELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 359 ~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
..+|+.+. ++.+ +.||||||.|+++|++|+.+|++|+|||||++||..+..-+.+.|++. .| |+|++.|+
T Consensus 140 ~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD 209 (530)
T COG0488 140 LGLGFPDE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD 209 (530)
T ss_pred hcCCCCcc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC
Confidence 88888776 5554 479999999999999999999999999999999999999999999864 46 88888764
No 363
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.94 E-value=4.4e-26 Score=293.43 Aligned_cols=173 Identities=23% Similarity=0.387 Sum_probs=136.3
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHH
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYE 331 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 331 (829)
+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~--~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP--SEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 4699999999999999999999999999999999997654 369999987 3799999998876 59999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-------cchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecC
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-------TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDE 404 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDE 404 (829)
|+.|+.. .+.+ + .+++++..+|. +-.++.+|..+ ..||||||||++||||++.+|++++|||
T Consensus 506 NI~~g~~------~~~~-~---~~~~~~~~~L~~~l~~l~~g~~t~vg~~g-~~LSgGqkqRi~lARAl~~~~~illLDe 574 (1490)
T TIGR01271 506 NIIFGLS------YDEY-R---YTSVIKACQLEEDIALFPEKDKTVLGEGG-ITLSGGQRARISLARAVYKDADLYLLDS 574 (1490)
T ss_pred HHHhccc------cchH-H---HHHHHHHHhHHHHHHhccccccccccCcC-CCcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9998742 1111 1 12222222221 12345666653 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEEe--------------cCcEEEEEcCCCC
Q 044554 405 PTSGLDARAAAIFMRT-VRNTVDTGRTVLFLLK--------------RGGQEIYVGPLGE 449 (829)
Q Consensus 405 PTsGLD~~~~~~i~~~-l~~l~~~g~tvllll~--------------~~G~~vy~G~~~~ 449 (829)
||||||+.++..+.+. ++++. +|+|+|++.| ++|+++..|+.++
T Consensus 575 p~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 575 PFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE 633 (1490)
T ss_pred CcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999984 66664 4889865544 3699999998643
No 364
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.93 E-value=1.5e-26 Score=275.42 Aligned_cols=149 Identities=21% Similarity=0.414 Sum_probs=143.4
Q ss_pred hhhhhhcCchhhhhccCCCCchhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 044554 4 ISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSALFR 83 (829)
Q Consensus 4 ~~~~~~~r~i~~kq~~~~fy~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~f~ 83 (829)
++....+|+||+|||..++|++++|.+|++++|+|+.++++++|++|+|||+||+.++++||+|+++++++++++.++++
T Consensus 412 ~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~ 491 (617)
T TIGR00955 412 INVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGY 491 (617)
T ss_pred HHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHHhhhccCCCc-ccc
Q 044554 84 LVAATGRNMVVANTFGSFTLLLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIAVNEFLGNSW-RKF 152 (829)
Q Consensus 84 ~~aa~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~~NEf~~~~~-~c~ 152 (829)
++++++||+..|+.+++++++++++|+||+||.++||+||+|++|+||+.|||||++.|||.+.++ +|.
T Consensus 492 ~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~ 561 (617)
T TIGR00955 492 LISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECT 561 (617)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999876 673
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=216.36 Aligned_cols=197 Identities=21% Similarity=0.295 Sum_probs=151.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee-
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP- 304 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~- 304 (829)
.+..+|+++++..... ..-...+|+|+|++++.||++++=||||||||||||+|-|...+ .+|+|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~--d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP--DEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeec------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC--CCceEEEEeCcc
Confidence 4778888877653211 12346799999999999999999999999999999999995443 25777774321
Q ss_pred -cC-----c----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCC
Q 044554 305 -KK-----Q----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLP 374 (829)
Q Consensus 305 -~~-----~----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~ 374 (829)
++ . .-.++.+|||.|--...|..+..|-+.-... ...++.+...+++..++..|++.... ...+
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll---~~gv~~~~a~~~a~~Ll~rLnlperL---W~La 149 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL---ARGVPREVARAKAADLLTRLNLPERL---WSLA 149 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH---HcCCCHHHHHHHHHHHHHHcCCCHHH---hcCC
Confidence 11 0 1134568999998777787766665543332 22456666677788999999886433 3222
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+...||||+|||.|||.++.+-+||+|||||+.||..++..++++|++-+..|..++=+.|+
T Consensus 150 -PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD 211 (235)
T COG4778 150 -PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD 211 (235)
T ss_pred -CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc
Confidence 46899999999999999999999999999999999999999999999988889998888764
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.93 E-value=4e-25 Score=284.92 Aligned_cols=174 Identities=24% Similarity=0.314 Sum_probs=131.7
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHH
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++ +.++|++|++.++ +.||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~--~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI--SEGRVWAE----------RSIAYVPQQAWIM-NATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEEC----------CeEEEEeCCCccC-CCcHH
Confidence 46799999999999999999999999999999999997654 36888653 3589999998876 57999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceec
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMD 403 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LD 403 (829)
||+.|+.. .+. +..+++++..++++ -.++.+|.. ...||||||||++|||||+.+|++++||
T Consensus 739 enI~~~~~------~~~----~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illLD 807 (1560)
T PTZ00243 739 GNILFFDE------EDA----ARLADAVRVSQLEADLAQLGGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLLD 807 (1560)
T ss_pred HHHHcCCh------hhH----HHHHHHHHHhhhHHHHHHhhccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99998531 111 11222333222221 123445543 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcEEEEEcCCC
Q 044554 404 EPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQEIYVGPLG 448 (829)
Q Consensus 404 EPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~~vy~G~~~ 448 (829)
||||+||+.++..+++.+.....+|+|+|++.| ++|++++.|+.+
T Consensus 808 EP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~ 866 (1560)
T PTZ00243 808 DPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSA 866 (1560)
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999988754322235888855443 479999999864
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=5.6e-25 Score=230.43 Aligned_cols=177 Identities=20% Similarity=0.220 Sum_probs=113.8
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHH-HHHhC--CCC--CC-eeEEEEEEcCe-ecCccccc-cceeEEecCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLL-DVLAG--RKT--SG-YITGNIAISGY-PKKQETFT-CISGYCEQND 321 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL-~~LaG--~~~--~g-~~~G~i~i~G~-~~~~~~~~-~~~~yv~Q~~ 321 (829)
.+.++|+|||+++++||+++|+||||||||||+ ..+.. ... .+ ........... ..+....+ ....+..|++
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCC
Confidence 346799999999999999999999999999995 44432 100 00 00000000000 00001111 1223334443
Q ss_pred C-C-CCCCCHH---HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCCHHHHHHHHHHHHhhh
Q 044554 322 I-H-SPNVTVY---ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLSTEKRKRLTIAVELVA 395 (829)
Q Consensus 322 ~-~-~~~lTV~---E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LSgGerqRlsIa~aL~~ 395 (829)
. . .+..+|. |...+...+. ..+...++ .+.++.+++.+ ..+.. +..||||||||++||++|+.
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHHHHHHh
Confidence 2 2 3444544 3222221111 11112222 46788999875 34544 35899999999999999999
Q ss_pred CC--CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 396 NP--SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 396 ~p--~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+| ++++|||||+|||+.++..+.+.|++++++|.|++++.|+
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~ 198 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD 198 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 98 5999999999999999999999999998889999888764
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=3.7e-25 Score=272.80 Aligned_cols=198 Identities=24% Similarity=0.324 Sum_probs=159.7
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++|+|++.+|. ++...+|+|||++|+|||.+||+|..|||||||+++|-+...+ .+|+|.|||.
T Consensus 1136 ~G~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCe
Confidence 45799999999994 2345799999999999999999999999999999999997654 3699999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccch-------hhhccC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLR-------KALVGL 373 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-------~~~vg~ 373 (829)
++.+ .++|++++.+|||+.+|. .|||+||.=. .+.++ +.+.+++|..+|.+.. |..+.+
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLDPf------~e~sD----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLDPF------DEYSD----DEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceec-CccccccCcc------cccCH----HHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence 9865 467889999999999875 7999998521 11222 2355566665554433 333333
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeE---------------EEEEecC
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTV---------------LFLLKRG 438 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tv---------------llll~~~ 438 (829)
+..++|-||||-+++||||+++++||+|||+|++.|++|-..|.+.||+-- +++|| +++| ++
T Consensus 1272 -gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd~DrVlVl-d~ 1348 (1381)
T KOG0054|consen 1272 -GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMDSDRVLVL-DA 1348 (1381)
T ss_pred -CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhhcCeEEEe-eC
Confidence 346899999999999999999999999999999999999999999999853 46787 4455 47
Q ss_pred cEEEEEcCCC
Q 044554 439 GQEIYVGPLG 448 (829)
Q Consensus 439 G~~vy~G~~~ 448 (829)
|+++.+|+|.
T Consensus 1349 G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1349 GRVVEFDSPA 1358 (1381)
T ss_pred CeEeecCChH
Confidence 9999999884
No 369
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.6e-25 Score=214.27 Aligned_cols=196 Identities=27% Similarity=0.364 Sum_probs=139.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe--
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY-- 303 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~-- 303 (829)
-++++++|..|. ...-.+||||++.|||+++|+|+|||||||||++|+++..+. .|++.+...
T Consensus 6 LL~V~~lsk~Yg-------------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~--~G~v~Y~~r~~ 70 (258)
T COG4107 6 LLSVSGLSKLYG-------------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDG 70 (258)
T ss_pred ceeehhhhhhhC-------------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC--CCeEEEEcCCC
Confidence 478888888772 345678999999999999999999999999999999987653 688877543
Q ss_pred -ecC-----ccc----cccceeEEecCCCCCCC------CCHHHHHHH-hhhhcCCCCCCHHHHHHHHHHHHHHcCCccc
Q 044554 304 -PKK-----QET----FTCISGYCEQNDIHSPN------VTVYESLLY-SAWLRLPPEVDSQTRKMFIEEVMELVELNTL 366 (829)
Q Consensus 304 -~~~-----~~~----~~~~~~yv~Q~~~~~~~------lTV~E~l~f-~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~ 366 (829)
+.+ +.. .|..-|+|.|++.---. ..+.|-+.- +++- -...++...+.++..+++..
T Consensus 71 ~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH-------YG~iR~~a~~WL~~VEI~~~ 143 (258)
T COG4107 71 QPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-------YGNIRAEAQDWLEEVEIDLD 143 (258)
T ss_pred CchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh-------hhhHHHHHHHHHHhcccCcc
Confidence 221 111 12234999998743222 233343321 1110 11223345667777776532
Q ss_pred hhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------
Q 044554 367 RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK--------- 436 (829)
Q Consensus 367 ~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~--------- 436 (829)
+ + +..++..|||++||+.|||-|++.|+++|+||||-|||..-+..++++++.+..+ |.+++++.|
T Consensus 144 R--i--DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla 219 (258)
T COG4107 144 R--I--DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA 219 (258)
T ss_pred c--c--cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhh
Confidence 1 1 1135789999999999999999999999999999999999999999999999765 777755433
Q ss_pred ------cCcEEEEEcCC
Q 044554 437 ------RGGQEIYVGPL 447 (829)
Q Consensus 437 ------~~G~~vy~G~~ 447 (829)
++|+++..|-.
T Consensus 220 ~rlmvmk~g~vve~GLT 236 (258)
T COG4107 220 DRLMVMKQGQVVESGLT 236 (258)
T ss_pred hcceeecCCCEeccccc
Confidence 45677766654
No 370
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=1.5e-25 Score=268.96 Aligned_cols=187 Identities=19% Similarity=0.180 Sum_probs=124.9
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEEcC
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-YITGNIAISG 302 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g-~~~G~i~i~G 302 (829)
...|+++|++++|. ++.+|+|+|+++++|+.+||+|||||||||||++|+|+...| +..|+|.+.+
T Consensus 175 ~~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~ 241 (718)
T PLN03073 175 IKDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVE 241 (718)
T ss_pred ceeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEe
Confidence 44699999999982 346999999999999999999999999999999999853111 1235554332
Q ss_pred eecCcc-----------------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHH-----------------
Q 044554 303 YPKKQE-----------------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQ----------------- 348 (829)
Q Consensus 303 ~~~~~~-----------------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~----------------- 348 (829)
+..... ..++.+++++|++.+... ++.++...... ...+.+
T Consensus 242 Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~ 316 (718)
T PLN03073 242 QEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANK----DGVDKDAVSQRLEEIYKRLELID 316 (718)
T ss_pred ccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccc----cccchHHHHHHHHHHHHHHHhcC
Confidence 211000 001224555554322111 11111100000 001111
Q ss_pred --HHHHHHHHHHHHcCCc-cchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH
Q 044554 349 --TRKMFIEEVMELVELN-TLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTV 425 (829)
Q Consensus 349 --~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~ 425 (829)
...++++++++.+|+. +..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++
T Consensus 317 ~~~~~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~- 390 (718)
T PLN03073 317 AYTAEARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW- 390 (718)
T ss_pred cchHHHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc-
Confidence 1223456677777775 3344443 579999999999999999999999999999999999999999999886
Q ss_pred hCCCeEEEEEe
Q 044554 426 DTGRTVLFLLK 436 (829)
Q Consensus 426 ~~g~tvllll~ 436 (829)
+.|+|++.|
T Consensus 391 --~~tviivsH 399 (718)
T PLN03073 391 --PKTFIVVSH 399 (718)
T ss_pred --CCEEEEEEC
Confidence 678876655
No 371
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=8.1e-25 Score=269.83 Aligned_cols=192 Identities=23% Similarity=0.401 Sum_probs=154.2
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++++|.+++.+.+ +....|+|||+++++|+++||+|+-|||||+||.+|.|... ..+|++.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS 583 (1381)
T ss_pred CceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe
Confidence 3469999999998531 22348999999999999999999999999999999999654 25799999885
Q ss_pred ecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccCCCC
Q 044554 304 PKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGLPGL 376 (829)
Q Consensus 304 ~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~~ 376 (829)
++||+|++.++ +.|||||+.|+.. .++ ++.+++++...|+. -..|.||+.|+
T Consensus 584 ----------iaYv~Q~pWI~-ngTvreNILFG~~------~d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi 642 (1381)
T KOG0054|consen 584 ----------VAYVPQQPWIQ-NGTVRENILFGSP------YDE----ERYDKVIKACALKKDLEILPFGDLTEIGERGI 642 (1381)
T ss_pred ----------EEEeccccHhh-CCcHHHhhhcCcc------ccH----HHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence 79999999876 5799999999842 232 34567777666543 23466777665
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE--------------EecCcEEE
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFL--------------LKRGGQEI 442 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvlll--------------l~~~G~~v 442 (829)
.||||||||+++|||+-+|++|.+||.|.|++|+....+|.+..-+-.-+++|+|++ +.++|++.
T Consensus 643 -nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 643 -NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred -CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEe
Confidence 699999999999999999999999999999999999998887554444457888432 22689999
Q ss_pred EEcCCCC
Q 044554 443 YVGPLGE 449 (829)
Q Consensus 443 y~G~~~~ 449 (829)
..|+.++
T Consensus 722 ~~Gty~e 728 (1381)
T KOG0054|consen 722 ESGTYEE 728 (1381)
T ss_pred cccCHHH
Confidence 9999854
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=3e-24 Score=228.18 Aligned_cols=172 Identities=24% Similarity=0.290 Sum_probs=128.2
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh--------CCC--CC-------C--eeEEEEEEcCeecCcccc-
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLA--------GRK--TS-------G--YITGNIAISGYPKKQETF- 310 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~La--------G~~--~~-------g--~~~G~i~i~G~~~~~~~~- 310 (829)
+..-|+|||..|+.|++++|.|+||||||||++.+. +.. .+ | .+.--+.++..|+.....
T Consensus 7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs 86 (261)
T cd03271 7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS 86 (261)
T ss_pred chhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC
Confidence 346799999999999999999999999999998552 110 01 0 111236677766532110
Q ss_pred -------------------------cc---ceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC
Q 044554 311 -------------------------TC---ISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVE 362 (829)
Q Consensus 311 -------------------------~~---~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~ 362 (829)
++ .+.|..++......+||.|++.|...++ +.+.+.++++.+|
T Consensus 87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vg 157 (261)
T cd03271 87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVG 157 (261)
T ss_pred cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcC
Confidence 00 1234445544557899999999875432 1234678899999
Q ss_pred Cccc-hhhhccCCCCCCCCHHHHHHHHHHHHhhhC---CCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 363 LNTL-RKALVGLPGLNGLSTEKRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 363 L~~~-~~~~vg~~~~~~LSgGerqRlsIa~aL~~~---p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|.+. .+.. .+.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|++++.|
T Consensus 158 L~~l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH 230 (261)
T cd03271 158 LGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEH 230 (261)
T ss_pred CchhhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 9863 4443 358999999999999999996 7999999999999999999999999999988999977665
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=1.8e-24 Score=221.75 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=115.9
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-------CeeEEEEEEcCeecCccccccceeEEecCCCCCCCCC
Q 044554 256 NGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS-------GYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVT 328 (829)
Q Consensus 256 ~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~-------g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 328 (829)
+++++++++| +++|+||||||||||+++|+|...+ +...|++.++|.+......++.+++++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999985321 122356777777654333456799999998765
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhh----hCCCcceecC
Q 044554 329 VYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELV----ANPSIIFMDE 404 (829)
Q Consensus 329 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~----~~p~iL~LDE 404 (829)
|.. . . .++++++++. .+..++. ++.||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~-----~----~~~~~~~l~~---~~~~~~~-----~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I-----S----QGDVSEIIEA---PGKKVQR-----LSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E-----e----hhhHHHHHhC---CCccccc-----hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 211 0 0 1245666666 3444444 3579999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 405 PTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 405 PTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||+|||+.++..+.+.|+++++ +.||+++.|+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~ 175 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHR 175 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECC
Confidence 9999999999999999999865 6888888764
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.90 E-value=3.1e-23 Score=239.26 Aligned_cols=175 Identities=26% Similarity=0.388 Sum_probs=140.4
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
+..+.++|+++.|. +++.+++++|+.+.+|+.+||+||||+|||||||+|+|...+ .+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~~ 384 (530)
T COG0488 319 KLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGET 384 (530)
T ss_pred CeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCCc
Confidence 45689999999883 336899999999999999999999999999999999996543 2677766421
Q ss_pred ecCccccccceeEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccch-hhhccCCCCCCCCH
Q 044554 304 PKKQETFTCISGYCEQND-IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLR-KALVGLPGLNGLST 381 (829)
Q Consensus 304 ~~~~~~~~~~~~yv~Q~~-~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-~~~vg~~~~~~LSg 381 (829)
-.+||..|+. .+.+..|+.|.+.-.. | ... ...+...+..+++..-. .+. ++.|||
T Consensus 385 --------v~igyf~Q~~~~l~~~~t~~d~l~~~~----~-~~~----e~~~r~~L~~f~F~~~~~~~~-----v~~LSG 442 (530)
T COG0488 385 --------VKIGYFDQHRDELDPDKTVLEELSEGF----P-DGD----EQEVRAYLGRFGFTGEDQEKP-----VGVLSG 442 (530)
T ss_pred --------eEEEEEEehhhhcCccCcHHHHHHhhC----c-ccc----HHHHHHHHHHcCCChHHHhCc-----hhhcCH
Confidence 2479999986 3347789999987432 1 111 34578889999987533 233 357999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|||.|+.+|+.++.+|.+|+|||||+.||..+...+.+.|++. ..|||++.|+
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD 495 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD 495 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 9999999999999999999999999999999999999999875 4688888764
No 375
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.89 E-value=9.5e-23 Score=234.00 Aligned_cols=183 Identities=29% Similarity=0.390 Sum_probs=147.8
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++++|++..-+ +....|++.++.++|||-+.|.||||||||||+|+|+|.=+-| +|+|..-
T Consensus 390 ~~~i~~~nl~l~~p------------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P-- 453 (604)
T COG4178 390 DHGITLENLSLRTP------------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP-- 453 (604)
T ss_pred cceeEEeeeeEECC------------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC--
Confidence 35799999998752 3358999999999999999999999999999999999986655 4666432
Q ss_pred ecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCC-CCCCCHH
Q 044554 304 PKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPG-LNGLSTE 382 (829)
Q Consensus 304 ~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~-~~~LSgG 382 (829)
. ...+-|+||.+.+ |..|.||.+.|.... ...++ +.+.+++.++||.++.+++-+... -+.||+|
T Consensus 454 -~-----~~~~lflpQ~PY~-p~GtLre~l~YP~~~---~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~G 519 (604)
T COG4178 454 -A-----DSALLFLPQRPYL-PQGTLREALCYPNAA---PDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGG 519 (604)
T ss_pred -C-----CCceEEecCCCCC-CCccHHHHHhCCCCC---CCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChh
Confidence 1 1236899999865 566999999886321 11333 347899999999999888644321 2469999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||+++||.|+++|++++|||.||+||..++..+.+.+++-. .+.|||-+.|+
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr 573 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHR 573 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccc
Confidence 9999999999999999999999999999999999999998743 37888888876
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=2.2e-22 Score=212.86 Aligned_cols=173 Identities=13% Similarity=0.165 Sum_probs=114.6
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC----------------CCCCe----eEE--EEEEcCee---
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR----------------KTSGY----ITG--NIAISGYP--- 304 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~----------------~~~g~----~~G--~i~i~G~~--- 304 (829)
+++.++++++ |++++|+||||||||||+++|++. ...|. ..+ ++.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~ 87 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRF 87 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCcc
Confidence 3466888886 789999999999999999999831 11110 112 44555531
Q ss_pred -cC--ccccccceeEEecCCCCCC-CCCHHHHHHHhhhhcCCCCCCH-HHHHHHHHHHHHHcCCccchhhhccCCCCCCC
Q 044554 305 -KK--QETFTCISGYCEQNDIHSP-NVTVYESLLYSAWLRLPPEVDS-QTRKMFIEEVMELVELNTLRKALVGLPGLNGL 379 (829)
Q Consensus 305 -~~--~~~~~~~~~yv~Q~~~~~~-~lTV~E~l~f~a~lr~~~~~~~-~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L 379 (829)
.. ....+|.+++++|+..+.+ ..|..|...+...+..+..... .... +++.+.+++.+..+.. ++.|
T Consensus 88 ~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~q---g~i~~l~~l~~~~~~~-----~~~l 159 (243)
T cd03272 88 PIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQ---GKINSLTNMKQDEQQE-----MQQL 159 (243)
T ss_pred CCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEc---CchHHhhhcccccccc-----cccc
Confidence 11 1234566899988877766 4677776665554432221100 0001 2233334444333333 3589
Q ss_pred CHHHHHHHHHHHHhhh----CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 380 STEKRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 380 SgGerqRlsIa~aL~~----~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +.++++..|
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h 219 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTF 219 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEec
Confidence 9999999999999974 5899999999999999999999999999865 656555443
No 377
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.87 E-value=7.6e-23 Score=197.56 Aligned_cols=179 Identities=27% Similarity=0.448 Sum_probs=149.3
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc---cccccceeEEecCCCCCCCCCHH
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ---ETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
-|-.+|+.+..||+.=++|||||||||||-.++|..+. +|+|.++|.+... ....|..+|..|+..-...+.|.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~---sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~ 90 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC---CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh
Confidence 36678999999999999999999999999999998653 6999999998754 23456668999887766778999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhh-----CC--Ccceec
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVA-----NP--SIIFMD 403 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~-----~p--~iL~LD 403 (829)
..|... .| .+++...++++.+.+++++...+.+ +.|||||-|||-+|-..+. || ++|++|
T Consensus 91 ~YL~L~----qP----~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD 157 (248)
T COG4138 91 HYLTLH----QP----DKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157 (248)
T ss_pred hhhhhc----Cc----hHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence 988753 33 3566677899999999998777654 5899999999999977654 55 489999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEE----------------EEecCcEEEEEcCCCC
Q 044554 404 EPTSGLDARAAAIFMRTVRNTVDTGRTVLF----------------LLKRGGQEIYVGPLGE 449 (829)
Q Consensus 404 EPTsGLD~~~~~~i~~~l~~l~~~g~tvll----------------ll~~~G~~vy~G~~~~ 449 (829)
||.++||......+-++|.+++.+|++|++ ++ +.|+++..|...+
T Consensus 158 EP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL-~rG~l~~~G~~~e 218 (248)
T COG4138 158 EPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLL-KRGKLLASGRREE 218 (248)
T ss_pred CCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHH-hcCeEEeecchhh
Confidence 999999999999999999999999999965 33 3588888888755
No 378
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.87 E-value=2.8e-21 Score=218.04 Aligned_cols=173 Identities=23% Similarity=0.424 Sum_probs=143.3
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc----ccccceeEEecC---CCCCCC
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE----TFTCISGYCEQN---DIHSPN 326 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~----~~~~~~~yv~Q~---~~~~~~ 326 (829)
.++||||++++||+++|-|-=|||+|-|+++|.|..+. .+|+|.+||++.... ..+..++||+.| +-++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 57899999999999999999999999999999995432 369999999987543 244578999976 467889
Q ss_pred CCHHHHHHHhhhhcCCC--CCCHHHHHHHHHHHHHHcCCccch-hhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceec
Q 044554 327 VTVYESLLYSAWLRLPP--EVDSQTRKMFIEEVMELVELNTLR-KALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMD 403 (829)
Q Consensus 327 lTV~E~l~f~a~lr~~~--~~~~~~~~~~v~~vl~~l~L~~~~-~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LD 403 (829)
++|+||+.++...+... -++....++.+++..+.|++..-. +.. +..||||.+|||.|||.|..+|++||||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 99999999883322221 245555567788999999875322 233 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 044554 404 EPTSGLDARAAAIFMRTVRNTVDTGRTVLF 433 (829)
Q Consensus 404 EPTsGLD~~~~~~i~~~l~~l~~~g~tvll 433 (829)
|||.|.|.-+..+|.++|++++++|++|++
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~ 456 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILM 456 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999999943
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=2.8e-23 Score=215.34 Aligned_cols=164 Identities=15% Similarity=0.203 Sum_probs=119.7
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCH
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
+++.+++++++ ++++|+||||||||||+++|.- ++|.+.. ...++.+++++|+....+.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~-~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRAS-KMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHH-HhhhhhHHHHhcCCCCCCCCce
Confidence 45679999887 8999999999999999999971 1222211 1112457899999888889999
Q ss_pred HHHHHHhhhhcCC-----CCCCHHHHHH--HHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhh----CCC
Q 044554 330 YESLLYSAWLRLP-----PEVDSQTRKM--FIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVA----NPS 398 (829)
Q Consensus 330 ~E~l~f~a~lr~~-----~~~~~~~~~~--~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~----~p~ 398 (829)
+|.+.+.+....- .....++... ..+++++.++|.+..++.+ +.+|+|||||++||++++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 9988766543210 0111111110 1256667777877666654 4799999999999999974 579
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 399 IIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 399 iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
++++||||+|||+.+...+.+.++++++ +.|++++.|+
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~ 189 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLR 189 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECc
Confidence 9999999999999999999999999864 5677777653
No 380
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=2.1e-22 Score=214.29 Aligned_cols=165 Identities=16% Similarity=0.243 Sum_probs=118.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe-ec-Cc----cccccceeEEecCC---------CCCCCCCH
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY-PK-KQ----ETFTCISGYCEQND---------IHSPNVTV 329 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~-~~-~~----~~~~~~~~yv~Q~~---------~~~~~lTV 329 (829)
..+++|+||||||||||+++|++...+. ..|++...|. +. .. ......+++++|++ ...+.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4499999999999999999999864321 1245555554 21 10 11234688999985 24567899
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc--------------------cchhhhccCCCCCCCCHHHHHHHHH
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN--------------------TLRKALVGLPGLNGLSTEKRKRLTI 389 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~--------------------~~~~~~vg~~~~~~LSgGerqRlsI 389 (829)
.+++......+...+ .++...+.+++.++.+++. +..+. .+..||+|||||++|
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~-----~~~~lS~G~~qr~~l 177 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKE-----SLTELSGGQRSLVAL 177 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcc-----cccccCHHHHHHHHH
Confidence 988865432211000 1222336688899999985 11222 246899999999999
Q ss_pred HHHhh----hCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 390 AVELV----ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 390 a~aL~----~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|++|+ .+|+++++||||+|||+.++..+.+.|+++. +|.+++++.|+
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~ 228 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLK 228 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 99998 5789999999999999999999999999985 48889998875
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.85 E-value=2.1e-21 Score=200.26 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=108.9
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHh----CCCCCCeeEEEEEEcCeecCccccccceeEEecCC-----CCCCCCC
Q 044554 258 VSGAFRPGVLTALMGVSGAGKTTLLDVLA----GRKTSGYITGNIAISGYPKKQETFTCISGYCEQND-----IHSPNVT 328 (829)
Q Consensus 258 vs~~i~~Gei~al~G~sGaGKTTLL~~La----G~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~-----~~~~~lT 328 (829)
.++++.+| +++|+|||||||||||++|. |...++ .|.+..+.........+..+++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 34567778 99999999999999999995 764432 233331111122223345688999987 2234568
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHH------HHHHHHhhhCCCccee
Q 044554 329 VYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKR------LTIAVELVANPSIIFM 402 (829)
Q Consensus 329 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqR------lsIa~aL~~~p~iL~L 402 (829)
+.|++.+. ..++ +++.+ +. .++.||+||||| ++||++++.+|+++++
T Consensus 93 ~~~~~~~~---------~~~~----~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFC---------HQGE----SNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeee---------chHH----HHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 88888653 1111 22222 22 235899999996 7899999999999999
Q ss_pred cCCCCCCCHHHHH-HHHHHHHHHHhC-CCeEEEEEec
Q 044554 403 DEPTSGLDARAAA-IFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 403 DEPTsGLD~~~~~-~i~~~l~~l~~~-g~tvllll~~ 437 (829)
||||++||+.++. .+.+.+++++++ |.|++++.|+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 9999999999999 999999999876 8899998864
No 382
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.85 E-value=1.5e-22 Score=207.01 Aligned_cols=209 Identities=25% Similarity=0.515 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHhccChhHH-HHHHHHHHHHHHHHHHHhcCCCCCcCchhhHHHHHhHHHHHHHHHHHhhhhhhhhhhh
Q 044554 535 TQCMVCLWKQHWSYWRNPSYN-AVRFLFTTVIALAFGTMFWDIGTKITKKQDLFNAMGSMYVAVLFLGVKNASSVQPVVS 613 (829)
Q Consensus 535 ~Q~~~l~~R~~~~~~R~~~~~-~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~p~~~ 613 (829)
+|++.+++|+++..+|||.+. ..+++..++.++++|.+|.++++ +.++. ++.|.+++.+...++....+......
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGN---SQDGF-NRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccc---ccccc-ccceeeehhhHHhhhhhcccchhhhh
Confidence 599999999999999999888 99999999999999999999873 22333 56777777766666555555556677
Q ss_pred hhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044554 614 VERTVFYRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAVAM 693 (829)
Q Consensus 614 ~eR~vf~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~ 693 (829)
.||..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +++.+++.+++..+++.++|.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999877 67777777777888889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHh
Q 044554 694 TPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQF 749 (829)
Q Consensus 694 ~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef 749 (829)
+++.+.+..+.+++..+++++||.+.|.+++|+|++|+.|+||++|++|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999998876
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.84 E-value=3.8e-20 Score=234.34 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=92.8
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-hhhhccCCCCCCCCHHHHHHHHHHHHhh---hCCC
Q 044554 323 HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-RKALVGLPGLNGLSTEKRKRLTIAVELV---ANPS 398 (829)
Q Consensus 323 ~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~~LSgGerqRlsIa~aL~---~~p~ 398 (829)
.+...||.|+|.++..-......+.++..+.+ +.++.+||.+. .+... ..||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45578999999887542211111223334455 47888999876 56543 579999999999999998 6999
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------------cCcEEEEEcCCCC
Q 044554 399 IIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------------RGGQEIYVGPLGE 449 (829)
Q Consensus 399 iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------------~~G~~vy~G~~~~ 449 (829)
+++|||||+|||..+...+++.|++++++|.||+++.| .+|+++..|++++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 99999999999999999999999999988999854333 2689999998753
No 384
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.83 E-value=7.2e-21 Score=197.60 Aligned_cols=162 Identities=17% Similarity=0.087 Sum_probs=106.1
Q ss_pred eeeEEEEe-CCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcC--eecCccccccceeEEecCCCCCCCCCHHHH
Q 044554 256 NGVSGAFR-PGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG--YPKKQETFTCISGYCEQNDIHSPNVTVYES 332 (829)
Q Consensus 256 ~~vs~~i~-~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G--~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 332 (829)
++++|... +|++++|+||||||||||+++|++... |...+....+. ........+..+++++|++.... ++.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY-GKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe-cCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 45555543 589999999999999999999996321 11112222211 01111223456888888763311 11111
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhh----------CCCccee
Q 044554 333 LLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVA----------NPSIIFM 402 (829)
Q Consensus 333 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~----------~p~iL~L 402 (829)
+ ..+.++..+.+ .++..++.+..+.. ++.||+|||||++||++|+. +|++++|
T Consensus 95 ---------~-gl~~~~~~~~~--~l~~g~l~~~l~~~-----~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 95 ---------R-GLDYDQFTRIV--LLPQGEFDRFLARP-----VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred ---------c-CCCHHHHHHhh--hhhhcchHHHhcCC-----ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1 23322211111 13333344444443 35799999999999999985 5789999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 403 DEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 403 DEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||+|||+.+...+.+.+++++++|+|++++.|+
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~ 192 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHV 192 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 99999999999999999999998778999999875
No 385
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=5.2e-20 Score=217.98 Aligned_cols=148 Identities=25% Similarity=0.497 Sum_probs=142.7
Q ss_pred hhhhhhcCchhhhhccCCCCchhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 044554 4 ISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSALFR 83 (829)
Q Consensus 4 ~~~~~~~r~i~~kq~~~~fy~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~f~ 83 (829)
++...+.|++|.|++..+.|+.++|.+|++++++|..++.+++|++|+|||+||+++..+|+.|++++++..+++.++..
T Consensus 409 i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~ 488 (613)
T KOG0061|consen 409 VPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGL 488 (613)
T ss_pred HHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHHhhhccCCCccc
Q 044554 84 LVAATGRNMVVANTFGSFTLLLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIAVNEFLGNSWRK 151 (829)
Q Consensus 84 ~~aa~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~~NEf~~~~~~c 151 (829)
+++++.||...|..++.+++..+++++||+++.+.+|.||+|++|+|+..|+||+++.|||.+....|
T Consensus 489 ~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~ 556 (613)
T KOG0061|consen 489 FISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRC 556 (613)
T ss_pred HHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998745555
No 386
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.81 E-value=8.5e-20 Score=195.67 Aligned_cols=185 Identities=20% Similarity=0.274 Sum_probs=142.7
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
.+++++|+.|.|.. ..--+..||++++.||++-|+|.||||||||+++|.|...|. +|+|.+||+|
T Consensus 321 ~~lelrnvrfay~~------------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq--sG~I~ldg~p 386 (546)
T COG4615 321 KTLELRNVRFAYQD------------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKP 386 (546)
T ss_pred cceeeeeeeeccCc------------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC--CCceeECCcc
Confidence 46999999999842 114578999999999999999999999999999999976653 7999999999
Q ss_pred cCcc---ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 305 KKQE---TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 305 ~~~~---~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
++.+ ++|+..+-|+-|-.+++.+- .++.... .+.++..++.+++.+.-.-.-|+-..-.||.
T Consensus 387 V~~e~ledYR~LfSavFsDyhLF~~ll------------~~e~~as---~q~i~~~LqrLel~~ktsl~d~~fs~~kLSt 451 (546)
T COG4615 387 VSAEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGKAS---PQLIEKWLQRLELAHKTSLNDGRFSNLKLST 451 (546)
T ss_pred CCCCCHHHHHHHHHHHhhhHhhhHhhh------------CCccCCC---hHHHHHHHHHHHHhhhhcccCCccccccccc
Confidence 8653 45666666666655554321 1222111 1336777888887765444333323357999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHH-HHHhCCCeEEEEEecC
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVR-NTVDTGRTVLFLLKRG 438 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~-~l~~~g~tvllll~~~ 438 (829)
|||||+++-.||+-+.+|+++||=-+--||.-++.+.+.+. .++++|+||+.+.|++
T Consensus 452 GQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred chHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 99999999999999999999999999999999999987665 4567799999999864
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.80 E-value=4.4e-20 Score=205.10 Aligned_cols=176 Identities=19% Similarity=0.299 Sum_probs=131.0
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
+..+.++|++|.|+ ++..++++++|-+.+++.+|++||||+|||||||++.|...+ ..|.+.-.-+
T Consensus 387 ~pvi~~~nv~F~y~------------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS------------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCC------------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc
Confidence 44689999999884 223799999999999999999999999999999999996654 2465543222
Q ss_pred ecCccccccceeEEecC--CCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 304 PKKQETFTCISGYCEQN--DIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 304 ~~~~~~~~~~~~yv~Q~--~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
. .+++..|. +.+.-+.++-|++.=.. + .+.+.+.+..++..+||....+.. ..+.||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPKF----P----DEKELEEMRSILGRFGLTGDAQVV----PMSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHhc----c----ccchHHHHHHHHHHhCCCcccccc----chhhccc
Confidence 1 12333332 23334567777765321 1 123445688999999999554432 1368999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|||+||..|+.++..|.+|+|||||+|||..+...+-+.|.++ ..+|+++.|
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSH 564 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSH 564 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeec
Confidence 9999999999999999999999999999999999999988775 345566554
No 388
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.80 E-value=5.4e-19 Score=197.82 Aligned_cols=189 Identities=23% Similarity=0.267 Sum_probs=144.9
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..+++++|+..-+ .++..+++|+|++|+.|+-+.|+||||||||+|+|+|+|.=+.. .|.+.--...
T Consensus 432 n~i~~e~v~l~tP-----------t~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~--~G~l~k~~~~ 498 (659)
T KOG0060|consen 432 NAIEFEEVSLSTP-----------TNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST--GGKLTKPTDG 498 (659)
T ss_pred ceEEeeeeeecCC-----------CCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC--CCeEEecccC
Confidence 5699999998642 12457899999999999999999999999999999999975422 4665433221
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCC------CCC
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPG------LNG 378 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~------~~~ 378 (829)
-. +.+-|+||.|. ++.-|.||-+.|...--.+. .+-...+.+.+.++.++|.|+.++.-|... -..
T Consensus 499 ~~-----~~lfflPQrPY-mt~GTLRdQvIYP~~~~~~~--~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dv 570 (659)
T KOG0060|consen 499 GP-----KDLFFLPQRPY-MTLGTLRDQVIYPLKAEDMD--SKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDV 570 (659)
T ss_pred CC-----CceEEecCCCC-ccccchhheeeccCcccccc--ccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhh
Confidence 11 34689999986 45569999998863211111 111223457888999999999888655431 135
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||+||+||++.||-+.++|++-+|||.||++|......+.+.+++ .|.|.+-+-||
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHR 626 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHR 626 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccH
Confidence 999999999999999999999999999999999999999888876 48888888775
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.80 E-value=2.1e-19 Score=199.82 Aligned_cols=187 Identities=20% Similarity=0.238 Sum_probs=116.2
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...+.++|++..+ .++.+++|+++++.+|+.++|+|+|||||||+|++|+|+..+-+..-++..-..
T Consensus 73 s~dvk~~sls~s~-------------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~ 139 (614)
T KOG0927|consen 73 SRDVKIESLSLSF-------------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139 (614)
T ss_pred cccceeeeeeecc-------------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcc
Confidence 3468999999876 457899999999999999999999999999999999997554322222222222
Q ss_pred ecCccccccceeEEecCCCCCCCCCHHHHHHHhh-hhcC--C--------------CCCCHHHHHHHHHHHHHHcC-Ccc
Q 044554 304 PKKQETFTCISGYCEQNDIHSPNVTVYESLLYSA-WLRL--P--------------PEVDSQTRKMFIEEVMELVE-LNT 365 (829)
Q Consensus 304 ~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a-~lr~--~--------------~~~~~~~~~~~v~~vl~~l~-L~~ 365 (829)
.......+ .+-++.+ +....+.-+.+-+ ++.. + .+.+.+.-..++-+++..+| +.+
T Consensus 140 e~~ps~~~-av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~ 213 (614)
T KOG0927|consen 140 EIEPSEKQ-AVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSE 213 (614)
T ss_pred cCCCchHH-HHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHh
Confidence 11110000 0000000 1111111111100 0000 0 01111222223344444444 344
Q ss_pred chhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 366 LRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 366 ~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
..++.+ +++|||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.-+ + ++++++|
T Consensus 214 m~~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh 277 (614)
T KOG0927|consen 214 MQDKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSH 277 (614)
T ss_pred HHHHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEec
Confidence 555543 58999999999999999999999999999999999999999888877532 1 5665554
No 390
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.80 E-value=5.2e-19 Score=215.95 Aligned_cols=97 Identities=24% Similarity=0.307 Sum_probs=79.4
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-hhhhccCCCCCCCCHHHHHHHHHHHHhhhCC---Ccce
Q 044554 326 NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-RKALVGLPGLNGLSTEKRKRLTIAVELVANP---SIIF 401 (829)
Q Consensus 326 ~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p---~iL~ 401 (829)
.+||.|++.|...++ + .....+.++.+||.+. .+..+ ..||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 478999998865432 1 1224678899999763 44433 579999999999999999999 9999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 402 MDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 402 LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|||||+|||..+...+++.|+++.++|.||+++.|
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH 891 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEH 891 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 99999999999999999999999888999976654
No 391
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=193.42 Aligned_cols=193 Identities=21% Similarity=0.365 Sum_probs=155.3
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++++||+..-. .....+++|||++++||+++|.|-.|-|-+.|+.+|+|..+.. +|+|.++|+
T Consensus 255 ~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~--~G~I~l~G~ 320 (501)
T COG3845 255 EVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA--SGRILLNGK 320 (501)
T ss_pred CeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC--CceEEECCE
Confidence 45699999997632 2256899999999999999999999999999999999965432 499999999
Q ss_pred ec-Cc----cccccceeEEecCC---CCCCCCCHHHHHHHhhhhcCC----CCCCHHHHHHHHHHHHHHcCCccchhhhc
Q 044554 304 PK-KQ----ETFTCISGYCEQND---IHSPNVTVYESLLYSAWLRLP----PEVDSQTRKMFIEEVMELVELNTLRKALV 371 (829)
Q Consensus 304 ~~-~~----~~~~~~~~yv~Q~~---~~~~~lTV~E~l~f~a~lr~~----~~~~~~~~~~~v~~vl~~l~L~~~~~~~v 371 (829)
+. .. ...+..++|||+|. -+.+.+|+.||+.+...-+.| .-++..+.++..+++++.++.......
T Consensus 321 ~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~-- 398 (501)
T COG3845 321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD-- 398 (501)
T ss_pred eccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC--
Confidence 86 22 12335689999875 356899999999876542211 124556667788999999988632211
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q 044554 372 GLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFL 434 (829)
Q Consensus 372 g~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvlll 434 (829)
...+.||||.+||+-+||+|..+|++|+..+||.|||..++..|.+.|.+.+++|+.|+++
T Consensus 399 --~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLi 459 (501)
T COG3845 399 --APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLI 459 (501)
T ss_pred --cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1246899999999999999999999999999999999999999999999999999999654
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.79 E-value=6.8e-19 Score=191.89 Aligned_cols=170 Identities=24% Similarity=0.329 Sum_probs=128.2
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHH
Q 044554 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLL 334 (829)
Q Consensus 255 L~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~ 334 (829)
|+-=.+++..||+++++||||-||||+.++|+|..++. +|+ . ..-.++|=||--.--...||++-|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~-------~~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----E-------EDLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----C-------ccceEeecceeecCCCCCcHHHHHH
Confidence 44445667778999999999999999999999965542 343 1 1123577777644446789999887
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHH
Q 044554 335 YSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAA 414 (829)
Q Consensus 335 f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~ 414 (829)
-...-+.. + .-...++.+-|+|+++.|+.+ .+|||||.|||+||.+|..++++.+||||++.||++.+
T Consensus 424 ~~~~~~~~---~----s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG---S----SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc---c----chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 54322111 1 123468889999999999876 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEec--------CcEEEEEcCCCC
Q 044554 415 AIFMRTVRNTVDT-GRTVLFLLKR--------GGQEIYVGPLGE 449 (829)
Q Consensus 415 ~~i~~~l~~l~~~-g~tvllll~~--------~G~~vy~G~~~~ 449 (829)
..+-+.||+..++ ++|.+++=|+ +--+++.|.++.
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~ 535 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGK 535 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCc
Confidence 9999999999875 5666554332 345667777765
No 393
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.78 E-value=9.8e-19 Score=179.54 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=102.6
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHH
Q 044554 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYE 331 (829)
Q Consensus 255 L~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~---g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 331 (829)
++++++++.+| +++|+|||||||||||++|...... ....|.. +.. -+........+...+|+....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~-~~~-~i~~~~~~~~i~~~~~~~~~~~------ 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSS-LKD-LIKDGESSAKITVTLKNQGLDA------ 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccccccccc-HHH-HhhCCCCeEEEEEEEEcCCccC------
Confidence 46777888888 8899999999999999999742110 0001110 000 0001111234667777654433
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHh----hhCCCcceecCCCC
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVEL----VANPSIIFMDEPTS 407 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL----~~~p~iL~LDEPTs 407 (829)
| ... ...++.++++++. .+..++. ++.||+|||||++||++| +.+|++++|||||+
T Consensus 83 ~-----------~~~-~~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 83 N-----------PLC-VLSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred C-----------cCC-HHHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 1 011 1123446677665 4445544 358999999999999999 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC--C-CeEEEEEec
Q 044554 408 GLDARAAAIFMRTVRNTVDT--G-RTVLFLLKR 437 (829)
Q Consensus 408 GLD~~~~~~i~~~l~~l~~~--g-~tvllll~~ 437 (829)
|||..++..+.+.|++++++ + +||+++.|+
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~ 175 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQD 175 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 99999999999999998653 3 466666554
No 394
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=1.2e-18 Score=172.91 Aligned_cols=194 Identities=18% Similarity=0.290 Sum_probs=142.5
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeE-EEEEEcCee
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG-YIT-GNIAISGYP 304 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g-~~~-G~i~i~G~~ 304 (829)
+.++|++..++.+ .+..+++|+||++...||+-+++|+||||||-..|+|+|..+.. .++ ....+++.+
T Consensus 4 LDIrnL~IE~~Ts---------qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~id 74 (330)
T COG4170 4 LDIRNLTIEFKTS---------QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDID 74 (330)
T ss_pred ccccceEEEEecC---------CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccch
Confidence 5677888887653 36688999999999999999999999999999999999954432 222 344555544
Q ss_pred cCc---cccc----cceeEEecCCC--CCCCCCHHHHHHHhhhhcCCCCCCH-------HHHHHHHHHHHHHcCCccchh
Q 044554 305 KKQ---ETFT----CISGYCEQNDI--HSPNVTVYESLLYSAWLRLPPEVDS-------QTRKMFIEEVMELVELNTLRK 368 (829)
Q Consensus 305 ~~~---~~~~----~~~~yv~Q~~~--~~~~lTV~E~l~f~a~lr~~~~~~~-------~~~~~~v~~vl~~l~L~~~~~ 368 (829)
.-+ +..| +.+++++|++. +.|+-+|...|.-. .|...-+ .-|+.++-+++..+|+.+-+|
T Consensus 75 LL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~----IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD 150 (330)
T COG4170 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQN----IPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhh----CccccccchHhhhhchhHHHHHHHHHHhccccHHH
Confidence 311 1222 34678999874 34555555444321 1111000 123455678899999998888
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEE
Q 044554 369 ALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLL 435 (829)
Q Consensus 369 ~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll 435 (829)
..-..| .+|..||-|+|.||.|++.+|++|+.||||+.+|+.++.+|.++|.++.+. |.||+++-
T Consensus 151 IM~SYP--~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s 216 (330)
T COG4170 151 IMRSYP--YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLIS 216 (330)
T ss_pred HHHhCc--chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEc
Confidence 766554 689999999999999999999999999999999999999999999999865 55555544
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.2e-18 Score=192.87 Aligned_cols=177 Identities=24% Similarity=0.290 Sum_probs=123.2
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
..+|+.+|.+..| +.+.+|++-++++..|..++|+|+||+|||||||+|+.- . +.+.
T Consensus 78 ~~Di~~~~fdLa~-------------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~--------~--v~~f 134 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-------------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG--------Q--VSGF 134 (582)
T ss_pred ccceeeeeeeeee-------------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc--------C--cCcc
Confidence 4568888888877 467899999999999999999999999999999999961 1 1222
Q ss_pred ecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHH-HHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 304 PKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQ-TRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 304 ~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~-~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
+.++. .+ .-+++-.......-|.++.+...- ..+... ++.+..+++|.-+|.+.-.... ..+.||||
T Consensus 135 ~veqE-~~--g~~t~~~~~~l~~D~~~~dfl~~e-----~~l~~~~~l~ei~~~~L~glGFt~emq~~----pt~slSGG 202 (582)
T KOG0062|consen 135 HVEQE-VR--GDDTEALQSVLESDTERLDFLAEE-----KELLAGLTLEEIYDKILAGLGFTPEMQLQ----PTKSLSGG 202 (582)
T ss_pred Cchhh-ee--ccchHHHhhhhhccHHHHHHHHhh-----hhhhccchHHHHHHHHHHhCCCCHHHHhc----cccccCcc
Confidence 22211 10 122332211222334444443211 011111 3344455578888876433221 24689999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecC
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKRG 438 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~~ 438 (829)
-|-|+++||||..+|+||+|||||+.||..+..-+.+.|+.+ +.|+|++-|+.
T Consensus 203 WrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr 255 (582)
T KOG0062|consen 203 WRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDR 255 (582)
T ss_pred hhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccH
Confidence 999999999999999999999999999999999999998875 47899988763
No 396
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=7.6e-18 Score=205.44 Aligned_cols=97 Identities=23% Similarity=0.298 Sum_probs=77.4
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-hhhhccCCCCCCCCHHHHHHHHHHHHhhh---CCCcce
Q 044554 326 NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-RKALVGLPGLNGLSTEKRKRLTIAVELVA---NPSIIF 401 (829)
Q Consensus 326 ~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~~LSgGerqRlsIa~aL~~---~p~iL~ 401 (829)
.+||.|.+.|...+. .. ....++++.+||... .+.. .+.||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 578888888765431 11 124578888998753 3443 35899999999999999997 599999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 402 MDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 402 LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|||||+|||+.+...+.+.|+++.++|.||+++.|
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H 889 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEH 889 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 99999999999999999999999888999866544
No 397
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.75 E-value=7.4e-18 Score=167.01 Aligned_cols=180 Identities=19% Similarity=0.359 Sum_probs=132.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..+++.++.|.|+. .-+++-|+|++++.|..+.++|.||||||||||+|+|..--+ .|.|.++|.+
T Consensus 12 ~aievsgl~f~y~~------------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~Vlgrs 77 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV------------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRS 77 (291)
T ss_pred ceEEEeccEEeccc------------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcC
Confidence 35899999999953 237999999999999999999999999999999999975433 3788888875
Q ss_pred cCc-c-------------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhh
Q 044554 305 KKQ-E-------------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKAL 370 (829)
Q Consensus 305 ~~~-~-------------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~ 370 (829)
.-. . .+.+..+.-- +-.+....++.+.+ |+.. ..+. + +-|++++.|+++-.-.
T Consensus 78 aFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g~dp-~---Rre~LI~iLDIdl~WR-- 144 (291)
T KOG2355|consen 78 AFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----GDDP-E---RREKLIDILDIDLRWR-- 144 (291)
T ss_pred ccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhcc-----CCCh-h---HhhhhhhheeccceEE--
Confidence 421 0 1222222222 22334456665544 4421 2222 2 3467777777652221
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 371 VGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 371 vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
.+.+|.||||||.|++.|++.=++|+|||-|--||..++..+++.+++-+++ |.||+...|
T Consensus 145 -----mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATH 206 (291)
T KOG2355|consen 145 -----MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATH 206 (291)
T ss_pred -----EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEee
Confidence 1469999999999999999999999999999999999999999999998875 778877654
No 398
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.5e-18 Score=182.31 Aligned_cols=175 Identities=20% Similarity=0.329 Sum_probs=136.3
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
|..+-++||+|.|+ +.+.++++++|-|.--..+||+||||.||||||++|.|..++. .|+..-
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~--~GE~RK--- 646 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN--DGELRK--- 646 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC--cchhhc---
Confidence 55688899999873 5678999999999999999999999999999999999987653 455432
Q ss_pred ecCccccccceeEEecCC--CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH
Q 044554 304 PKKQETFTCISGYCEQND--IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST 381 (829)
Q Consensus 304 ~~~~~~~~~~~~yv~Q~~--~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg 381 (829)
..+-.+|+..|+. .+-..-|..|.|.-.. +++.++ ....+-.+||..-++|+- ++.|||
T Consensus 647 -----nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq~----ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 647 -----NHRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPYQE----ARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred -----cceeeeechhhhhHHhhccccCHHHHHHHhc------CCChHH----HHHHhhhhhhhhccceEe----eeecCC
Confidence 2233578887764 3344567777765322 233322 456788889988888763 578999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|||-||++|.--+..|+||||||||++||..+...+.+.|++. ...||++.|+
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHD 760 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHD 760 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecc
Confidence 9999999999999999999999999999999999999888875 3456666654
No 399
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.74 E-value=4.9e-18 Score=180.39 Aligned_cols=162 Identities=14% Similarity=0.227 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe--------ecCc--cccccceeEEecCCCC-CCCCCHHHHH-H
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY--------PKKQ--ETFTCISGYCEQNDIH-SPNVTVYESL-L 334 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~--------~~~~--~~~~~~~~yv~Q~~~~-~~~lTV~E~l-~ 334 (829)
+++|+|||||||||||++|++..... .|++..++. .... ....-.+.|..|++.. ....++++.. .
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~--~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~ 101 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEK--SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSS 101 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC--cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceE
Confidence 99999999999999999999843210 133322211 1000 0111123343343221 0011111110 0
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhh---------ccC--C------CCCCCCHHHHHHHHHHHHhhhC-
Q 044554 335 YSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKAL---------VGL--P------GLNGLSTEKRKRLTIAVELVAN- 396 (829)
Q Consensus 335 f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~---------vg~--~------~~~~LSgGerqRlsIa~aL~~~- 396 (829)
+. .. ....+ .+.++++++.+|+....... +.+ | .+..||+|||||++||++++.+
T Consensus 102 ~~--in-gk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 102 YR--IN-GKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred EE--EC-CEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 10 00 01112 23457888888885332111 001 1 1257999999999999999875
Q ss_pred ---CCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 397 ---PSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 397 ---p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|++++|||||+|||..++..+.+.|++++++|.+++++.|+
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~ 218 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK 218 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 89999999999999999999999999998778999998864
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.69 E-value=1.8e-17 Score=180.94 Aligned_cols=154 Identities=29% Similarity=0.369 Sum_probs=111.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc---ccc---------cc------ceeEEecCCCC
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ---ETF---------TC------ISGYCEQNDIH 323 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~---~~~---------~~------~~~yv~Q~~~~ 323 (829)
.+||++++|+|+||-||||-+|+|+|...+. -|+ .++.|-.+ +.| ++ ++..=+|--.+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PN--LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPN--LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccC--CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 5799999999999999999999999965442 111 12211000 000 00 01111222111
Q ss_pred CC---CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcc
Q 044554 324 SP---NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSII 400 (829)
Q Consensus 324 ~~---~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL 400 (829)
.| .-||+|-|.-. + .+...+++++.|+|++..|+-+ +.|||||-||++||.+++++.++.
T Consensus 173 iPk~~KG~v~elLk~~---------d---e~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 173 IPKVVKGKVGELLKKV---------D---ERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHHHhcchHHHHHHhh---------h---hcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCEE
Confidence 22 34777766421 1 1124789999999999999876 489999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 401 FMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 401 ~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
++|||||-||...+....+.+|++++.+++|+++-|
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEH 271 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEec
Confidence 999999999999999999999999988999988755
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.68 E-value=2e-16 Score=164.29 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=53.4
Q ss_pred CCCCCHHHHHHHHHHHHh----hhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-C-CeEEEEEec
Q 044554 376 LNGLSTEKRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-G-RTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL----~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g-~tvllll~~ 437 (829)
+..||+|||||+.++++| +.+|+++++||||+|||+.++..+++.+++++++ | .+++++.|+
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~ 191 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPK 191 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchh
Confidence 357999999998877554 5899999999999999999999999999999876 5 468887765
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.67 E-value=7.2e-17 Score=165.80 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=97.4
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHH
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYE 331 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 331 (829)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .++.|.+.+++.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchh
Confidence 46788887765 79999999999999999999998431 11233333221 25667778899999999
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCH
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA 411 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~ 411 (829)
++.++.. ...++. ++++++++.+++ .+|+++++||||+|+|+
T Consensus 79 ~l~~~~s------~~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9976531 112222 446666665542 68999999999999999
Q ss_pred HHHHHHHH-HHHHHHhCCCeEEEEEec
Q 044554 412 RAAAIFMR-TVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 412 ~~~~~i~~-~l~~l~~~g~tvllll~~ 437 (829)
.....+.. .++++.+.|.+++++.|+
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~ 147 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHD 147 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCc
Confidence 99987754 688887778888888864
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.67 E-value=3.9e-16 Score=168.61 Aligned_cols=190 Identities=23% Similarity=0.310 Sum_probs=132.4
Q ss_pred eEEEEeeEEEEeCCccccCC-------------CCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-
Q 044554 226 SITFDDITYSVDMPQEMINP-------------GVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS- 291 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~-------------~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~- 291 (829)
.+.+++++..+....+.++. +.......+|+|+|++++||++++|+|+|||||||||++|+|....
T Consensus 357 p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~ 436 (593)
T COG2401 357 PIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGR 436 (593)
T ss_pred ccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcc
Confidence 36777777766433222211 1122446799999999999999999999999999999999994221
Q ss_pred C-----eeEEEEEEcCeecCccccccceeEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc
Q 044554 292 G-----YITGNIAISGYPKKQETFTCISGYCEQND-IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT 365 (829)
Q Consensus 292 g-----~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~-~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~ 365 (829)
+ +.+|.+.+--.. ..+.+|-++ .-+..-|+.|.+.- .+.+. ....++++..|+.+
T Consensus 437 ~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s-----~tGD~------~~AveILnraGlsD 497 (593)
T COG2401 437 GEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRS-----KTGDL------NAAVEILNRAGLSD 497 (593)
T ss_pred cccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHhh-----ccCch------hHHHHHHHhhccch
Confidence 1 224555442111 123444332 22334566666531 11111 12467888888865
Q ss_pred chhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 366 LRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 366 ~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
-.- -....++||.|||.|+.||.++..+|++++.||--|.||..|+..+.+-+.+++++ |.|.+++.|+
T Consensus 498 Avl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThr 567 (593)
T COG2401 498 AVL---YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567 (593)
T ss_pred hhh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 322 12234689999999999999999999999999999999999999999999999865 8898888875
No 404
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.66 E-value=2.9e-16 Score=173.71 Aligned_cols=168 Identities=20% Similarity=0.301 Sum_probs=126.9
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHH
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
...++..+|++++||--+.|.||||||||+|.++|+|.-+- ++|.-. ......+-|+||.+..- -.|.|
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv--------y~g~L~--~P~~~~mFYIPQRPYms-~gtlR 562 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV--------YNGLLS--IPRPNNIFYIPQRPYMS-GGTLR 562 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc--------cCCeee--cCCCcceEeccCCCccC-cCccc
Confidence 45689999999999999999999999999999999997532 223211 11223489999998654 67888
Q ss_pred HHHHHhhh---hcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCC----CCCCHHHHHHHHHHHHhhhCCCcceec
Q 044554 331 ESLLYSAW---LRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGL----NGLSTEKRKRLTIAVELVANPSIIFMD 403 (829)
Q Consensus 331 E~l~f~a~---lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~----~~LSgGerqRlsIa~aL~~~p~iL~LD 403 (829)
|.+.|.-. ++. .+.. ++..+++++.++|+++..+-.|-.-+ .-||||||||+.+||.+-++|+.-+||
T Consensus 563 DQIIYPdS~e~~~~-kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLD 637 (728)
T KOG0064|consen 563 DQIIYPDSSEQMKR-KGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLD 637 (728)
T ss_pred ceeecCCcHHHHHh-cCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhh
Confidence 88776321 000 0111 23467888888888887765543211 259999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 404 EPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 404 EPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|.||+........+.+..++ .|.+.+-+.||
T Consensus 638 EcTsAvsidvE~~i~~~ak~---~gi~llsithr 668 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIFQAAKD---AGISLLSITHR 668 (728)
T ss_pred hhhcccccchHHHHHHHHHh---cCceEEEeecC
Confidence 99999999888888877665 48888888876
No 405
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.62 E-value=5.8e-16 Score=159.32 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=87.6
Q ss_pred eeeeEEEEeCCe-EEEEEcCCCCCHHHHHHHHh--------CCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCC
Q 044554 255 LNGVSGAFRPGV-LTALMGVSGAGKTTLLDVLA--------GRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSP 325 (829)
Q Consensus 255 L~~vs~~i~~Ge-i~al~G~sGaGKTTLL~~La--------G~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~ 325 (829)
.-++|+++.+|+ +++|.||||||||||||+|+ |..-+. . . ...++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~-------------~-~--~~~~~~~~~~~~--- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA-------------A-E--GSSLPVFENIFA--- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc-------------c-c--cccCcCccEEEE---
Confidence 457899999995 89999999999999999998 321110 0 0 011233333311
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCC
Q 044554 326 NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEP 405 (829)
Q Consensus 326 ~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEP 405 (829)
.++..+..+. ..+.+|+|+|||..|++++ .+|+++++|||
T Consensus 78 ----------------------------------~lg~~~~l~~-----~~s~fs~g~~~~~~i~~~~-~~p~llllDEp 117 (200)
T cd03280 78 ----------------------------------DIGDEQSIEQ-----SLSTFSSHMKNIARILQHA-DPDSLVLLDEL 117 (200)
T ss_pred ----------------------------------ecCchhhhhc-----CcchHHHHHHHHHHHHHhC-CCCcEEEEcCC
Confidence 0111111111 1246999999999999884 89999999999
Q ss_pred CCCCCHHHHHHHHH-HHHHHHhCCCeEEEEEec
Q 044554 406 TSGLDARAAAIFMR-TVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 406 TsGLD~~~~~~i~~-~l~~l~~~g~tvllll~~ 437 (829)
|+|||+.+...+.+ .++++.+.|.+++++.|.
T Consensus 118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 118 GSGTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 99999999999964 678887778888887653
No 406
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.62 E-value=3.7e-15 Score=150.48 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHhh----hCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 379 LSTEKRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 379 LSgGerqRlsIa~aL~----~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||+|||||++||++|+ .+|+++++|||++|||+..+..+.+.+++++++|.+++++.|+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 9999999999999996 6899999999999999999999999999998778898888764
No 407
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.9e-15 Score=166.28 Aligned_cols=179 Identities=18% Similarity=0.244 Sum_probs=131.4
Q ss_pred CCceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcC
Q 044554 223 EPHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG 302 (829)
Q Consensus 223 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G 302 (829)
.+..+++.+|++.|+. ++-+++.+++.+++.-+..+++|+||+||||++|++.|...+ ..|.+.++
T Consensus 359 ~~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~- 424 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRH- 424 (582)
T ss_pred CCCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeec-
Confidence 3457999999988742 222789999999999999999999999999999999995543 24544433
Q ss_pred eecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-hhhhccCCCCCCCCH
Q 044554 303 YPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-RKALVGLPGLNGLST 381 (829)
Q Consensus 303 ~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~~LSg 381 (829)
.+.+++|-.|...-+..+.|.+ +.+-.+++ | ...++ .+++-+..+||+.- +.. .+.+|||
T Consensus 425 -------~r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~-p-G~~~e----e~r~hl~~~Gl~g~la~~-----si~~LSG 485 (582)
T KOG0062|consen 425 -------PRLRIKYFAQHHVDFLDKNVNA-VDFMEKSF-P-GKTEE----EIRRHLGSFGLSGELALQ-----SIASLSG 485 (582)
T ss_pred -------ccceecchhHhhhhHHHHHhHH-HHHHHHhC-C-CCCHH----HHHHHHHhcCCCchhhhc-----cccccCC
Confidence 2456789888755444444443 23333222 2 22332 25677788888742 222 2468999
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|||-||++|.....+|.+|+|||||+.||-.+-..+.+.|+.+ +..|+++.|+
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd 538 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD 538 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc
Confidence 9999999999999999999999999999999999999998876 3456666653
No 408
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=9.2e-15 Score=157.89 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHhhh----CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 378 GLSTEKRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~----~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
.||||||||+++|++++. +|+++++||||+|||+.+...+.+.++++.+ +.|++++.|+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~ 232 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHL 232 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEech
Confidence 499999999999997654 9999999999999999999999999999864 6888888764
No 409
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.58 E-value=1.1e-14 Score=185.22 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=86.7
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhC---CCccee
Q 044554 326 NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVAN---PSIIFM 402 (829)
Q Consensus 326 ~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~---p~iL~L 402 (829)
.|||.|.+.|... ..+....-+.|+.+||..+. .|.+ ...|||||.||+-+|.+|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LGq~-~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LGQN-LSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CCCc-CCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 5788888777531 11223345667777876543 3443 347999999999999999876 689999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec--------------------CcEEEEEcCCC
Q 044554 403 DEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR--------------------GGQEIYVGPLG 448 (829)
Q Consensus 403 DEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~--------------------~G~~vy~G~~~ 448 (829)
||||+||++.....+++.++++.+.|.||+++-|+ ||++++.|+++
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~ 1792 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPK 1792 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHH
Confidence 99999999999999999999999999999988763 68888888874
No 410
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.58 E-value=2.5e-14 Score=166.00 Aligned_cols=98 Identities=26% Similarity=0.365 Sum_probs=75.5
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCC---Cccee
Q 044554 326 NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANP---SIIFM 402 (829)
Q Consensus 326 ~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p---~iL~L 402 (829)
.|||.|...|... .+. ..+.-+.|..+||.-+ ..|.| ...|||||.||+-+|.+|..+. -+.+|
T Consensus 783 ~MTveEA~~FF~~------~p~---I~rkLqtL~dVGLgYi---~LGQp-atTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEA------IPK---IARKLQTLVDVGLGYI---KLGQP-ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhc------chH---HHHHHHHHHHcCcceE---ecCCc-cccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 5777777777642 111 1223345555666533 24544 3479999999999999999877 79999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 403 DEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 403 DEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
||||+||-.....++++.|.++.++|.||+++-|
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEH 883 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 9999999999999999999999999999988765
No 411
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.52 E-value=8.2e-14 Score=138.57 Aligned_cols=60 Identities=20% Similarity=0.315 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHhhh----CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 378 GLSTEKRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~----~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+++..++|.++++..|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~ 140 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHL 140 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 499999999999999987 789999999999999999999999999887667888888764
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=1.5e-14 Score=151.11 Aligned_cols=129 Identities=20% Similarity=0.209 Sum_probs=93.1
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcccccccee-EEecCCCCCCCCCH
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISG-YCEQNDIHSPNVTV 329 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~-yv~Q~~~~~~~lTV 329 (829)
...+.+|++++.++|++++|.||||+||||||+.++-. .+...+| |||.+....+
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe----
Confidence 35789999999999999999999999999999999821 0111223 4544321111
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHh--hhCCCcceecCC--
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVEL--VANPSIIFMDEP-- 405 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL--~~~p~iL~LDEP-- 405 (829)
.++++++.+++.+.. .+++|.|+++++.+++++ +.+|++++||||
T Consensus 72 -----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~ 120 (222)
T cd03285 72 -----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGR 120 (222)
T ss_pred -----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcC
Confidence 124455556655332 147999999999999999 899999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEe
Q 044554 406 -TSGLDARAAAIFMRTVRNTVD-TGRTVLFLLK 436 (829)
Q Consensus 406 -TsGLD~~~~~~i~~~l~~l~~-~g~tvllll~ 436 (829)
|++||..+.... .++.+.+ .|.++++..|
T Consensus 121 gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH 151 (222)
T cd03285 121 GTSTYDGFGLAWA--IAEYIATQIKCFCLFATH 151 (222)
T ss_pred CCChHHHHHHHHH--HHHHHHhcCCCeEEEEec
Confidence 999999887543 3344443 4788888776
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.48 E-value=5.7e-14 Score=144.82 Aligned_cols=135 Identities=14% Similarity=0.188 Sum_probs=95.5
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHH
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
+..+.+|++++.++|++++|+||||+||||+++++++..-- .+.-.+| +...+.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-------------------a~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-------------------AQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-------------------HHcCCCc---chhhcCccCh
Confidence 45799999999999999999999999999999999874210 0001123 2234556777
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCC
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLD 410 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD 410 (829)
|++.... +..+..+. +.+.+|+|++|+ ..+.+++++|+++++|||++|+|
T Consensus 73 d~I~~~~------------------------~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSRL------------------------SNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEec------------------------CCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 7664321 11111111 124689898865 56677889999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhCCCeEEEEEec
Q 044554 411 ARAAAIFM-RTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 411 ~~~~~~i~-~~l~~l~~~g~tvllll~~ 437 (829)
+.....+. ..++.+.+.|.++++..|.
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~ 150 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHF 150 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 98766654 4677777778898888764
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2e-14 Score=155.69 Aligned_cols=190 Identities=20% Similarity=0.220 Sum_probs=123.0
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CC----eeEEE
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT---SG----YITGN 297 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~---~g----~~~G~ 297 (829)
+.|.++|.+.+. ..+.++.|-|++|-.|..++|+||||-||||||+-|+.|.- +. ..+-+
T Consensus 263 ~DIKiEnF~ISA-------------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQE 329 (807)
T KOG0066|consen 263 MDIKIENFDISA-------------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQE 329 (807)
T ss_pred ccceeeeeeeec-------------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeee
Confidence 456666655543 45789999999999999999999999999999999998632 11 01123
Q ss_pred EEEcCeecCc----cccccceeEEecCCC-----CCCCCCHHHHHHH-hhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-
Q 044554 298 IAISGYPKKQ----ETFTCISGYCEQNDI-----HSPNVTVYESLLY-SAWLRLPPEVDSQTRKMFIEEVMELVELNTL- 366 (829)
Q Consensus 298 i~i~G~~~~~----~~~~~~~~yv~Q~~~-----~~~~lTV~E~l~f-~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~- 366 (829)
|..+..+.-. .+. ++...+...+. -....|+.|-|.- ...+|--...+ ...+..+++.-||.+.-
T Consensus 330 vvad~t~Ai~tvl~aD~-kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~s---AEarARRILAGLGFskEM 405 (807)
T KOG0066|consen 330 VVADSTSAIDTVLKADK-KRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADS---AEARARRILAGLGFSKEM 405 (807)
T ss_pred eeecCcHHHHHHHHhhH-HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcccc---chhHHHHHHhhcCCChhH
Confidence 3333222100 000 11111111111 1234566665532 22333211111 12345677777776542
Q ss_pred hhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCc
Q 044554 367 RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKRGG 439 (829)
Q Consensus 367 ~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~~G 439 (829)
.++. ....|||-|-||++||||...|-+|.|||||+.||-.+..-+-+.|+.+. +|.+++.|+.|
T Consensus 406 Q~rP-----t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg 470 (807)
T KOG0066|consen 406 QERP-----TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG 470 (807)
T ss_pred hcCC-----ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc
Confidence 2221 24799999999999999999999999999999999999888888888875 58888887654
No 415
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=6.2e-13 Score=143.25 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHhh---------hCCCcceecCCCCCCCHHHHHHHHHHHHHH
Q 044554 377 NGLSTEKRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIFMRTVRNT 424 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~---------~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l 424 (829)
+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.++++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR 238 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC
Confidence 348999999999999985 699999999999999999999999999875
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.44 E-value=8.6e-14 Score=143.41 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEEec
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR-TVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~-~l~~l~~~g~tvllll~~ 437 (829)
.++.++| |++.+.+++.+|+++++||||+|||+.....+.. .++.+.+.+.+++++.|+
T Consensus 91 ~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~ 150 (202)
T cd03243 91 TFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHF 150 (202)
T ss_pred eHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECCh
Confidence 4555555 5777788899999999999999999998888765 566676678888887764
No 417
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.42 E-value=2.6e-11 Score=127.76 Aligned_cols=230 Identities=15% Similarity=0.095 Sum_probs=158.4
Q ss_pred HHHHHhccChhHHHHHHHHHHHHHHHHHHHhcCC-CCC--cCchhhH-HHHHhHHHHHHHHHHHhhhhhhhhhhhhhhhH
Q 044554 543 KQHWSYWRNPSYNAVRFLFTTVIALAFGTMFWDI-GTK--ITKKQDL-FNAMGSMYVAVLFLGVKNASSVQPVVSVERTV 618 (829)
Q Consensus 543 R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~-~~~--~~~~~~~-~~~~g~lf~~~~~~~~~~~~~v~p~~~~eR~v 618 (829)
|.++..+|||.....-+.+-++..+++|.++-+. +++ ....+-. +-..|.+.+.+...+.... .......|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~--~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSG--ISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHhCH
Confidence 5667789999888888888888888888877543 111 0111111 1122333333233222221 11112223344
Q ss_pred HHhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH
Q 044554 619 FYRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAVAMTPNYH 698 (829)
Q Consensus 619 f~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~ 698 (829)
+.|=+. .=-+...|++++.+.+++..++..+++.++.++..+++. ..++..++..++...+..++|.++++.+++.+
T Consensus 79 ~~~~~~-~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKEILV-APASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 433332 233678999999999999999999999999988777543 33444444555556677899999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCCCCcHHHHHHhhhCCccCchh
Q 044554 699 ISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLESGETVEQFLSSYFGFRHDFLG 778 (829)
Q Consensus 699 ~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 778 (829)
.++.+.+.+..++..++|.+.|.+.+|+|++|+.+++|++|+.|++-....++. ...+.+
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~--------------------~~~~~~ 215 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS--------------------PTFPLE 215 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC--------------------cccchH
Confidence 999999999999999999999999999999999999999999998654333221 012345
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044554 779 VVAAVVGALPVLFALIFAV 797 (829)
Q Consensus 779 ~~~~il~~~~v~f~~~~~~ 797 (829)
.++++++.+.+++.+++..
T Consensus 216 ~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 216 QDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788888888888877654
No 418
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.40 E-value=6.1e-13 Score=163.17 Aligned_cols=119 Identities=21% Similarity=0.338 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCH------HHHHHHHHHHHHHcCCccc-hhhhccCCCCCCCCHHHHHHHHHHHHhhhCC
Q 044554 325 PNVTVYESLLYSAWLRLPPEVDS------QTRKMFIEEVMELVELNTL-RKALVGLPGLNGLSTEKRKRLTIAVELVANP 397 (829)
Q Consensus 325 ~~lTV~E~l~f~a~lr~~~~~~~------~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p 397 (829)
..+||.|.+.|...+..+..... ++..++++ .++.+||.++ .|+.+ ..|||||||||.||++|..+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhCC
Confidence 47899999998554432211000 12223343 5777888766 56654 489999999999999999997
Q ss_pred --CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------------cCcEEEEEcCCCC
Q 044554 398 --SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------------RGGQEIYVGPLGE 449 (829)
Q Consensus 398 --~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------------~~G~~vy~G~~~~ 449 (829)
++++|||||+|||+..+..+.+.|++++++|.|||++.| ++|++++.|++.+
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e 582 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEE 582 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHH
Confidence 899999999999999999999999999988999966544 5789999888643
No 419
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=8.4e-13 Score=161.68 Aligned_cols=119 Identities=24% Similarity=0.345 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCH------HHHHHHHHHHHHHcCCccc-hhhhccCCCCCCCCHHHHHHHHHHHHhhhCC
Q 044554 325 PNVTVYESLLYSAWLRLPPEVDS------QTRKMFIEEVMELVELNTL-RKALVGLPGLNGLSTEKRKRLTIAVELVANP 397 (829)
Q Consensus 325 ~~lTV~E~l~f~a~lr~~~~~~~------~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p 397 (829)
..+||.|.+.|...+..+....+ .+..+++ +.++.+||..+ .++. ...|||||+||+.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~-----~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA-----AGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC-----cCcCCHHHHHHHHHHHHHhhCC
Confidence 47899999998766543211000 0111122 22556677654 3443 3589999999999999999986
Q ss_pred --CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------------cCcEEEEEcCCCC
Q 044554 398 --SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------------RGGQEIYVGPLGE 449 (829)
Q Consensus 398 --~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------------~~G~~vy~G~~~~ 449 (829)
++++|||||+|||+.+...+++.|++++++|.|||++.| ++|++++.|++.+
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~e 580 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEE 580 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHH
Confidence 899999999999999999999999999988999976654 5789999888643
No 420
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.39 E-value=2.5e-12 Score=139.93 Aligned_cols=200 Identities=20% Similarity=0.286 Sum_probs=138.3
Q ss_pred ceEEEEeeEEEEeCCcccc-CCC--CCCCceeeeeeeEEEEeCC-----eEEEEEcCCCCCHHHHHHHHhCCCCCCeeEE
Q 044554 225 HSITFDDITYSVDMPQEMI-NPG--VSEDQLVLLNGVSGAFRPG-----VLTALMGVSGAGKTTLLDVLAGRKTSGYITG 296 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~-~~~--~~~~~~~iL~~vs~~i~~G-----ei~al~G~sGaGKTTLL~~LaG~~~~g~~~G 296 (829)
..++.+++++.+....+.. +.+ ...+.+..+-+..+.|+.| |++..+|+||-||||++++++|+.+++ ..|
T Consensus 319 ~rfR~~~l~f~~~~~~~~ek~~~~y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd-~~~ 397 (592)
T KOG0063|consen 319 LRFRPECLVFLASDLSSEDRRTGRYSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD-EGG 397 (592)
T ss_pred ccccchhheeeeccccchhhhhheeccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC-ccC
Confidence 4466667777665432211 111 1224456777888888777 578999999999999999999976653 123
Q ss_pred EEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCC
Q 044554 297 NIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGL 376 (829)
Q Consensus 297 ~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~ 376 (829)
++-. -.++|=||.-.--.+.|||+.+.--- | +.-...+.+.++++-|.+++..|.-+
T Consensus 398 e~p~-----------lnVSykpqkispK~~~tvR~ll~~kI--r-----~ay~~pqF~~dvmkpL~ie~i~dqev----- 454 (592)
T KOG0063|consen 398 EIPV-----------LNVSYKPQKISPKREGTVRQLLHTKI--R-----DAYMHPQFVNDVMKPLQIENIIDQEV----- 454 (592)
T ss_pred cccc-----------cceeccccccCccccchHHHHHHHHh--H-----hhhcCHHHHHhhhhhhhHHHHHhHHh-----
Confidence 3321 12566677644445679998875311 1 11122356888999999999888865
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEEe--------cCcEEEEEcCC
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTV-DTGRTVLFLLK--------RGGQEIYVGPL 447 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~-~~g~tvllll~--------~~G~~vy~G~~ 447 (829)
.+|||||.||+++|..|-..+++.+.|||.+-||++.+...-+.+++.. +..+|-.++-| .+--+++.|.+
T Consensus 455 q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~p 534 (592)
T KOG0063|consen 455 QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQP 534 (592)
T ss_pred hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCc
Confidence 5899999999999999999999999999999999999988888888853 44555533221 23456677766
Q ss_pred C
Q 044554 448 G 448 (829)
Q Consensus 448 ~ 448 (829)
+
T Consensus 535 s 535 (592)
T KOG0063|consen 535 S 535 (592)
T ss_pred c
Confidence 4
No 421
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.35 E-value=6.3e-14 Score=143.20 Aligned_cols=138 Identities=24% Similarity=0.390 Sum_probs=132.4
Q ss_pred hhhhhcCchhhhhccCCCCchhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 044554 5 SMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSALFRL 84 (829)
Q Consensus 5 ~~~~~~r~i~~kq~~~~fy~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~f~~ 84 (829)
.....+|..++|++....|++.+|.+++.+.+++..++..+++.++.|++.|++.+ +|+.++++++++.++..++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~ 150 (210)
T PF01061_consen 73 ISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLL 150 (210)
T ss_pred hhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccc
Confidence 44567889999999999999999999999999999999999999999999999988 8899999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHHhhhc
Q 044554 85 VAATGRNMVVANTFGSFTLLLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIAVNEF 144 (829)
Q Consensus 85 ~aa~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~~NEf 144 (829)
+++++++...|+.+.++...++.+++|.++|.+.+|.|++|+.|+||+.|+.|++..++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 151 LAALFPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred cccchhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999987
No 422
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.32 E-value=2.1e-12 Score=118.44 Aligned_cols=74 Identities=19% Similarity=0.144 Sum_probs=60.7
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc---cccccceeEEecCCCCCCCCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ---ETFTCISGYCEQNDIHSPNVT 328 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~~~~~~~lT 328 (829)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.+... ...++..++++|+ ....|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhh
Confidence 46899999999999999999999999999999996 3678899987632 3345566777776 44579
Q ss_pred HHHHHHHh
Q 044554 329 VYESLLYS 336 (829)
Q Consensus 329 V~E~l~f~ 336 (829)
++|||.+.
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999873
No 423
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.29 E-value=1.1e-10 Score=120.47 Aligned_cols=151 Identities=19% Similarity=0.099 Sum_probs=121.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 044554 629 SAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAVAMTPNYHISAIIVSSFN 708 (829)
Q Consensus 629 ~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~p~~~~A~~~~~~~~ 708 (829)
+...++++|.+..++..+++++++..+.|++.|++.. +++.+++.+++..+++.++|.++++++++...+ +....+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 5567799999999999999999999999999999864 456666666777788899999999999876544 333445
Q ss_pred HHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCCCCcHHHHHHhhhCCccCchhHHHHHHHHHH
Q 044554 709 GLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLESGETVEQFLSSYFGFRHDFLGVVAAVVGALP 788 (829)
Q Consensus 709 ~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~ 788 (829)
.+.++++|.+.|.+.||+|++|+.+++|++|+.+++-...+++. ....|.++++++++.
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~---------------------~~~~~~~~~~L~~~~ 192 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN---------------------DGTLWQAVAVLLLIL 192 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc---------------------HHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999976666431 112467889999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 044554 789 VLFALIFAVGIKAKLL 804 (829)
Q Consensus 789 v~f~~~~~~~l~~~~~ 804 (829)
+++.+++....|+.+|
T Consensus 193 ~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 193 VVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHhhhcC
Confidence 9998888887775543
No 424
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.28 E-value=1.3e-09 Score=116.48 Aligned_cols=237 Identities=11% Similarity=0.077 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHHhcCCCCCcCchhhHHHHH--hHHHHHHHHHHHhhhhhhhhhhh
Q 044554 537 CMVCLWKQHWSYWRN-PSYNAVRFLFTTVIALAFGTMFWDIGTKITKKQDLFNAM--GSMYVAVLFLGVKNASSVQPVVS 613 (829)
Q Consensus 537 ~~~l~~R~~~~~~R~-~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~~~~--g~lf~~~~~~~~~~~~~v~p~~~ 613 (829)
...+.+|+++..+|+ |.....-+++-++.-+++|..+-....+..+ .+..+.+ |.+-+++++.++..... ..+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~~f~~pg~l~~~~~~~~~~~~~~--~~~~ 83 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYAAFLAAGMVATSAMTASTFETIY--ATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 345669999999999 9999999998888888888887532111111 1111111 22222222222111110 1111
Q ss_pred --hhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044554 614 --VERTVFYRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAV 691 (829)
Q Consensus 614 --~eR~vf~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~ 691 (829)
.|+..++|-+.+-. +...+.+|+++.+.-..++..++...+.++ .|..+. ......+..+++..+.+.++|++++
T Consensus 84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444444 788999999999987777777666555543 344333 2333344444556677778999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCCCCcHHHHHHhhhC
Q 044554 692 AMTPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLESGETVEQFLSSYFG 771 (829)
Q Consensus 692 a~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~~~~~~~~l~~~~g 771 (829)
+++++.+.+..+.+++..+++.+||.+.|.++||.|++++.++||++|+.|++-...+++.
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~------------------- 221 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP------------------- 221 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC-------------------
Confidence 9999999999999999999999999999999999999999999999999998665433321
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 044554 772 FRHDFLGVVAAVVGALPVLFALIFAVGIK 800 (829)
Q Consensus 772 ~~~~~~~~~~~il~~~~v~f~~~~~~~l~ 800 (829)
..+.+.++++++++.+++..++....|
T Consensus 222 --~~~~~~~~~~l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 222 --GTQVGLHLGALCLYAVVPFFISAALLR 248 (253)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111345567777877766665554433
No 425
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.28 E-value=1.2e-11 Score=128.70 Aligned_cols=130 Identities=18% Similarity=0.111 Sum_probs=85.1
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHH
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
++.+.+|++++.++ ++++|.||||||||||||.+++..--+ . .|...... +..++++.| +++.+++.
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~----~---~g~~vp~~--~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA----Q---IGSFVPAS--KAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh----c---cCCeeccc--cceecceee---EeccCCch
Confidence 34689999999888 999999999999999999998732111 1 12222111 234566655 45677777
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH--HHHHHHHHHHHhhhCCCcceecCC---
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST--EKRKRLTIAVELVANPSIIFMDEP--- 405 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg--GerqRlsIa~aL~~~p~iL~LDEP--- 405 (829)
|++..+ .|. .|+++++-+...+.+|++++||||
T Consensus 84 ~~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~g 121 (216)
T cd03284 84 DDLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRG 121 (216)
T ss_pred hhhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 776532 111 233344444444679999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 406 TSGLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 406 TsGLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
|+++|.... ....++.+.+. +.++++..|.
T Consensus 122 t~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~ 152 (216)
T cd03284 122 TSTYDGLSI--AWAIVEYLHEKIGAKTLFATHY 152 (216)
T ss_pred CChHHHHHH--HHHHHHHHHhccCCcEEEEeCc
Confidence 888887552 23344555555 7888888764
No 426
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.26 E-value=2.4e-09 Score=114.14 Aligned_cols=209 Identities=12% Similarity=0.105 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHhcCC-CCCc----Cchhh--HHHHHhHHHHHHHHHHHhhhh
Q 044554 534 FTQCMVCLWKQHWSYWRNPSYNAVRFLFTTVIALAFGTMFWDI-GTKI----TKKQD--LFNAMGSMYVAVLFLGVKNAS 606 (829)
Q Consensus 534 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~-~~~~----~~~~~--~~~~~g~lf~~~~~~~~~~~~ 606 (829)
++++..+++|.++...|||.....-+++-++.-+++|..|-.. +.+. ++..+ ..-.-|.+-+.+.+.++....
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~ 80 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL 80 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678899999999999999999999999999999999988542 1100 00001 111223332222222222211
Q ss_pred hhhhhhhhhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHH
Q 044554 607 SVQPVVSVERTVFYRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFY 686 (829)
Q Consensus 607 ~v~p~~~~eR~vf~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~ 686 (829)
. .....|+....|=+.... +...+.+++++.+.-..+++.+++.++.+. .|.+.+..........+++..++..++
T Consensus 81 ~--~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 81 S--MVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred H--hHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 1 112233344444455444 788899999999988887777665555543 366555433443344444556667789
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhccCccCCCCc---chHhHHhhhhChHHHHHHHHHH
Q 044554 687 GMMAVAMTPNYHISAIIVSSFNGLWNVFSGYIIPKTRI---PIWWRWYYWACPISWTLYGLVA 746 (829)
Q Consensus 687 g~~i~a~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~i---p~~~~W~~yisp~~y~~~~l~~ 746 (829)
|.++++++++.+.+..+.++++.+++..+|.+.|.+.+ |+|++|+.++||++|..|++-.
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~ 219 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRF 219 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHH
Confidence 99999999999888889899999999999999998666 8899999999999999988754
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.24 E-value=9e-12 Score=129.38 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhhCCCcceecCCC-----CCCCHHHHHHHHHHHHHHHh
Q 044554 382 EKRKRLTIAVELVANPSIIFMDEPT-----SGLDARAAAIFMRTVRNTVD 426 (829)
Q Consensus 382 GerqRlsIa~aL~~~p~iL~LDEPT-----sGLD~~~~~~i~~~l~~l~~ 426 (829)
-|++++.||++++.+|+++++|||| +|||+.+.+.+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999864
No 428
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.21 E-value=3.2e-09 Score=111.73 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=141.2
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHhcCCCCCcCchhhHHH-HHhHHHHHHHHHHHhhhhhhhhhhhhhhhHHHhHhcCCC
Q 044554 549 WRNPSYNAVRFLFTTVIALAFGTMFWDIGTKITKKQDLFN-AMGSMYVAVLFLGVKNASSVQPVVSVERTVFYRERAAGL 627 (829)
Q Consensus 549 ~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~~-~~g~lf~~~~~~~~~~~~~v~p~~~~eR~vf~RE~~~~~ 627 (829)
+|||.....-+.+-+++=++.+.+|-+.. +. + ..+. ..+.+-+...+.+....... -....|+..+.|=+.+-.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~-i~~er~~G~l~rl~~~P~ 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-TH-N--RGATFIPVLMALAAISTAFTGQAIA-VARDRRYGALKRLGATPL 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CC-c--chhHhhHHHHHHHHHHHHHHHHHHH-HHHHHHhCHHHHHhcCCC
Confidence 69999887777777777666666665411 11 1 1111 22322222222222111111 111223455555555544
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCHHHHHHHH
Q 044554 628 YSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAVAMT---PNYHISAIIV 704 (829)
Q Consensus 628 Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a~~---p~~~~A~~~~ 704 (829)
+...|++++++..++..+++.+++. +.++..|++...... ..+....+....+..++.++++++ ++.+.+..+.
T Consensus 77 -~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~ 153 (232)
T TIGR00025 77 -PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVA 153 (232)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 7899999999999999887766655 445677887654333 222223333344555666666665 4555668888
Q ss_pred HHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCCCCcHHHHHHhhhCCccCchhHHHHHH
Q 044554 705 SSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLESGETVEQFLSSYFGFRHDFLGVVAAVV 784 (829)
Q Consensus 705 ~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~il 784 (829)
+++..++.++||.+.|.+.||.|++|+.+++|++|+.+++-....++. +....+.+++++
T Consensus 154 ~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~--------------------~~~~~~~~~~~l 213 (232)
T TIGR00025 154 NLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV--------------------DTFGAVRDLVVV 213 (232)
T ss_pred HHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC--------------------ChhhHHHHHHHH
Confidence 888999999999999999999999999999999999998765433221 112345677788
Q ss_pred HHHHHHHHHHHHHHHH
Q 044554 785 GALPVLFALIFAVGIK 800 (829)
Q Consensus 785 ~~~~v~f~~~~~~~l~ 800 (829)
+++.+++..++....|
T Consensus 214 ~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 214 LAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888887776666544
No 429
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.13 E-value=3.1e-10 Score=118.05 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=80.8
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCC-CCCHHH
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSP-NVTVYE 331 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~-~lTV~E 331 (829)
.+=+|+++.=..+.+++|.||||+|||||||.++....-. ..|..... . .-.++|..|....+. ..++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la-~~G~~v~a------~--~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA-HIGSFVPA------D--SATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH-hCCCeeEc------C--CcEEeeeeeeeeeeCCccChhh
Confidence 3445555432223799999999999999999998421000 01222111 1 123566666432211 111111
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC--HHHHHHHHHHHHhhhCCCcceecCCCCCC
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS--TEKRKRLTIAVELVANPSIIFMDEPTSGL 409 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS--gGerqRlsIa~aL~~~p~iL~LDEPTsGL 409 (829)
++| .-|-||++++++++.+|+++++|||++|+
T Consensus 88 ----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 88 ----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred ----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 122 34678999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhCC---CeEEEEEec
Q 044554 410 DARAAAIF-MRTVRNTVDTG---RTVLFLLKR 437 (829)
Q Consensus 410 D~~~~~~i-~~~l~~l~~~g---~tvllll~~ 437 (829)
|+.....+ ...++++.+.| .++++..|.
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~ 153 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHF 153 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCh
Confidence 99765544 56888887643 366666653
No 430
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.13 E-value=9.2e-11 Score=142.39 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=86.6
Q ss_pred eEEEEeCC-eEEEEEcCCCCCHHHHHHHHhCCC-CCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHH
Q 044554 258 VSGAFRPG-VLTALMGVSGAGKTTLLDVLAGRK-TSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLY 335 (829)
Q Consensus 258 vs~~i~~G-ei~al~G~sGaGKTTLL~~LaG~~-~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f 335 (829)
+|+.+.+| ++++|.||||+|||||||+++|.. .. ..| .+||..... .+.+.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a--q~G------------------~~Vpa~~~~--~~~~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF--QSG------------------IPIPANEHS--EIPYFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH--HhC------------------CCccCCccc--cccchhhee-
Confidence 68888877 899999999999999999999851 10 011 133332210 011111110
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHH
Q 044554 336 SAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 415 (829)
Q Consensus 336 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~ 415 (829)
. ....+ +.+. + +.+.+|+|++++..|++.+ .+|+++++|||++|+|+....
T Consensus 371 ~-------~i~~~------~si~---------~------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 A-------DIGDE------QSIE---------Q------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred e-------ecChH------hHHh---------h------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 0 01110 0111 1 1246999999999998877 789999999999999999999
Q ss_pred HH-HHHHHHHHhCCCeEEEEEec
Q 044554 416 IF-MRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 416 ~i-~~~l~~l~~~g~tvllll~~ 437 (829)
.+ ...++.+.+.|.++++..|.
T Consensus 422 ala~aiLe~l~~~g~~viitTH~ 444 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHY 444 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECCh
Confidence 88 56778887778888887764
No 431
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.12 E-value=1.2e-10 Score=126.90 Aligned_cols=157 Identities=27% Similarity=0.384 Sum_probs=106.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCC---eeEE---EE---EEcCeecC-------ccccccc--eeEEecCCCCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRKTSG---YITG---NI---AISGYPKK-------QETFTCI--SGYCEQNDIHS 324 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~~~g---~~~G---~i---~i~G~~~~-------~~~~~~~--~~yv~Q~~~~~ 324 (829)
+||++.+++|.||-||||-|++|+|+.++. ...+ +- ...|..+. ...++.. --||.|-+..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~- 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA- 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH-
Confidence 689999999999999999999999975542 0000 00 00010000 0000000 0111111110
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecC
Q 044554 325 PNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDE 404 (829)
Q Consensus 325 ~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDE 404 (829)
...+|.++|.- ...++..+++++.++|.+..|+-+ ..|||||-||.+||++-+.+.++.++||
T Consensus 177 ~k~~v~~~l~~------------~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 177 VKGTVGSLLDR------------KDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred HHHHHHHHHHH------------HhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhcceeEecC
Confidence 12344444431 111224678889999998888765 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 405 PTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 405 PTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|.|-||...+..-...||.+....+=|+++-|+
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHD 272 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHD 272 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEee
Confidence 999999999999999999998877777777654
No 432
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.12 E-value=2.2e-10 Score=119.46 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHhh----hCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~----~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.+|||||++++||.-|+ .+.++++||||.++||...+..+.+.|+++.++.+ ++++.|
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q-~ii~Th 197 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQ-FIITTH 197 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSE-EEEE-S
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 59999999999997664 46789999999999999999999999999875433 445544
No 433
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.10 E-value=9.2e-11 Score=119.27 Aligned_cols=60 Identities=15% Similarity=0.234 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHH-HHHHHHHhC-CCeEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFM-RTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~-~~l~~l~~~-g~tvllll~~ 437 (829)
+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++++..|.
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~ 121 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHY 121 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 467877776333332 34599999999999999999887775 556777764 7888888764
No 434
>PRK00064 recF recombination protein F; Reviewed
Probab=99.10 E-value=9.4e-10 Score=123.37 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHHhh---------hCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEE
Q 044554 377 NGLSTEKRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLL 435 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~---------~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll 435 (829)
..+|.||+|++.+|+.|+ .+|+|++||||+++||+..+..+++.+.++ +..+++..
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~ 336 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITT 336 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEc
Confidence 469999999999999886 699999999999999999999999988764 33444444
No 435
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.04 E-value=2.1e-09 Score=112.27 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=81.1
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC-CCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHH
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~-~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
..+.+|+++.+++|++++|+||||+||||+++++++. ... ..|.... +.. -.++|..|- +..+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la--~~G~~v~-a~~-------~~~~~~~~i---~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA--QIGSFVP-ASS-------ATLSIFDSV---LTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH--hCCCEEE-cCc-------eEEeccceE---EEEecCc
Confidence 5789999999999999999999999999999999992 111 1232211 110 012222221 1111111
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC--HHHHHHHHHHHHhhhCCCcceecCCCCC
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS--TEKRKRLTIAVELVANPSIIFMDEPTSG 408 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS--gGerqRlsIa~aL~~~p~iL~LDEPTsG 408 (829)
|++. .++| ..|-+|++-...-+.+|+++++|||.+|
T Consensus 85 d~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~g 122 (222)
T cd03287 85 DSIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRG 122 (222)
T ss_pred cccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCC
Confidence 1110 0111 1233444444445678999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhC-CCeEEEEEec
Q 044554 409 LDARAAAIF-MRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 409 LD~~~~~~i-~~~l~~l~~~-g~tvllll~~ 437 (829)
.|+.....+ ...++.+.+. +.++++..|.
T Consensus 123 T~~~d~~~i~~~il~~l~~~~~~~~i~~TH~ 153 (222)
T cd03287 123 TSTHDGIAIAYATLHYLLEEKKCLVLFVTHY 153 (222)
T ss_pred CChhhHHHHHHHHHHHHHhccCCeEEEEccc
Confidence 987776665 4567777765 7788888764
No 436
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.03 E-value=6.3e-10 Score=119.35 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc----cccccceeEEecCCCCCCCCCHHHHHHHhhhhcC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ----ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRL 341 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~----~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~ 341 (829)
.-++|+||||||||||+++|+|..+++ .|++.++|+++.. ....+.+++++|++. .+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~--~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG--ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC--CceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch-------
Confidence 578999999999999999999987654 7999999988642 223344678888653 34556655421
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHH
Q 044554 342 PPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTV 421 (829)
Q Consensus 342 ~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l 421 (829)
+. + |. ..+++ ..+|+++++|||++ ...+...+
T Consensus 182 -----k~------~--------------------------~~---~~~i~--~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -----KA------E--------------------------GM---MMLIR--SMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -----HH------H--------------------------HH---HHHHH--hCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 0 00 12222 35999999999974 23344444
Q ss_pred HHHHhCCCeEEEEEec
Q 044554 422 RNTVDTGRTVLFLLKR 437 (829)
Q Consensus 422 ~~l~~~g~tvllll~~ 437 (829)
+.+ ++|.++++..|+
T Consensus 214 ~~~-~~G~~vI~ttH~ 228 (270)
T TIGR02858 214 EAL-HAGVSIIATAHG 228 (270)
T ss_pred HHH-hCCCEEEEEech
Confidence 444 469999998874
No 437
>PRK15066 inner membrane transport permease; Provisional
Probab=99.02 E-value=1.8e-07 Score=100.04 Aligned_cols=244 Identities=12% Similarity=0.086 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHHhccChhH-HHHHHHHHHHHHHHHHHHhcCCCCCcCchhh-HHHHHhHHHHHHHHHHHhhhhhhhh
Q 044554 533 FFTQCMVCLWKQHWSYWRNPSY-NAVRFLFTTVIALAFGTMFWDIGTKITKKQD-LFNAMGSMYVAVLFLGVKNASSVQP 610 (829)
Q Consensus 533 ~~~Q~~~l~~R~~~~~~R~~~~-~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~-~~~~~g~lf~~~~~~~~~~~~~v~p 610 (829)
.++-++.+.+|..+...||+.. ...-+++.++..+++|..+-....+..+.+- ..-.-|.+-+.....+..... .
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~~---~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNVA---S 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 4667888999999999999854 4445555566677777665321010001110 111123332222222221111 1
Q ss_pred hhhhhhh--HHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHH
Q 044554 611 VVSVERT--VFYRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGM 688 (829)
Q Consensus 611 ~~~~eR~--vf~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~ 688 (829)
.+..+|. ...|=+.+ --+...+.+++++...-..++.+++..++.+...|.+.. ....++..+++........|.
T Consensus 83 ~i~~~~~~~~~~~l~vt-p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl 159 (257)
T PRK15066 83 SFFSAKFQRNIEELLVS-PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL 159 (257)
T ss_pred HHHHHHHhhhHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 1222331 11111222 247788999999988766666666555555444465533 222222333333333445588
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCCCCcHHHHHHh
Q 044554 689 MAVAMTPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLESGETVEQFLSS 768 (829)
Q Consensus 689 ~i~a~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~~~~~~~~l~~ 768 (829)
+++.+.++.+.+..+.++++.+++..||.+.|.+++|+|++|+.++||++|..|++=..-+++
T Consensus 160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~----------------- 222 (257)
T PRK15066 160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI----------------- 222 (257)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC-----------------
Confidence 888889998888999999999999999999999999999999999999999999876433321
Q ss_pred hhCCccCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044554 769 YFGFRHDFLGVVAAVVGALPVLFALIFAVGIKAKL 803 (829)
Q Consensus 769 ~~g~~~~~~~~~~~il~~~~v~f~~~~~~~l~~~~ 803 (829)
+....|.++++++++.+++.+++....|+.+
T Consensus 223 ----~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~ 253 (257)
T PRK15066 223 ----SDVPLWLAFAVLLVFIVVLYLLAWYLLERGR 253 (257)
T ss_pred ----CCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1112466778888888887777766665443
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.87 E-value=1.1e-08 Score=107.56 Aligned_cols=132 Identities=17% Similarity=0.135 Sum_probs=79.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHH-HHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhh
Q 044554 261 AFRPGVLTALMGVSGAGKTTL-LDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWL 339 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTL-L~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~l 339 (829)
-+++|+++.|.|+|||||||| ++.+++..+.| . .+.|+..+ .|..|.+.....+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~-----------------~~~yi~~e------~~~~~~~~~~~~~ 74 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG--Y-----------------SVSYVSTQ------LTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC--C-----------------cEEEEeCC------CCHHHHHHHHHHh
Confidence 479999999999999999999 78888753322 0 12344422 3444544443322
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhh----hCCCcceecCCCCCC----CH
Q 044554 340 RLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELV----ANPSIIFMDEPTSGL----DA 411 (829)
Q Consensus 340 r~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~----~~p~iL~LDEPTsGL----D~ 411 (829)
.. +. ++..+. +.-...+. . ..+|++++++-.+.+.+- .+|+++++||||+++ |+
T Consensus 75 g~----~~-------~~~~~~-~~l~~~~~-----~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~ 136 (230)
T PRK08533 75 GY----DI-------NKKLIS-GKLLYIPV-----Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASE 136 (230)
T ss_pred CC----ch-------HHHhhc-CcEEEEEe-----c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcch
Confidence 21 11 111110 00000110 0 135666555544443332 369999999999999 77
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEE
Q 044554 412 RAAAIFMRTVRNTVDTGRTVLFLL 435 (829)
Q Consensus 412 ~~~~~i~~~l~~l~~~g~tvllll 435 (829)
.....+.+.+++++++|.|+++..
T Consensus 137 ~~~~~l~~~l~~l~~~g~tvi~t~ 160 (230)
T PRK08533 137 VAVNDLMAFFKRISSLNKVIILTA 160 (230)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEe
Confidence 888899999999988888766643
No 439
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.87 E-value=8.2e-09 Score=107.56 Aligned_cols=133 Identities=15% Similarity=0.123 Sum_probs=84.3
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHH
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
+..+-+|+++..++|++++|.||||+||||+++.+++..--.. . |.++..+. ..++++ |.++..+...
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-~------G~~vpa~~--~~i~~~---~~i~~~~~~~ 83 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-M------GMDVPAKS--MRLSLV---DRIFTRIGAR 83 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-c------CCccCccc--cEeccc---cEEEEecCcc
Confidence 3578999999999999999999999999999999998311000 0 11111110 011111 1122222222
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC--HHHHHHHHHHHHhhhCCCcceecCCCCC
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS--TEKRKRLTIAVELVANPSIIFMDEPTSG 408 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS--gGerqRlsIa~aL~~~p~iL~LDEPTsG 408 (829)
|++.. ++| ..|-+|++-....+.+|+++++|||.+|
T Consensus 84 d~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~G 121 (218)
T cd03286 84 DDIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRG 121 (218)
T ss_pred ccccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCC
Confidence 22211 111 0233444444444578999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHhC-CCeEEEEEec
Q 044554 409 LDARAAAIFMRT-VRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 409 LD~~~~~~i~~~-l~~l~~~-g~tvllll~~ 437 (829)
+|+.....+... ++.+.+. +.++++..|.
T Consensus 122 t~~~dg~~la~ail~~L~~~~~~~~i~~TH~ 152 (218)
T cd03286 122 TSTHDGYAIAHAVLEYLVKKVKCLTLFSTHY 152 (218)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 999999888887 7777765 7888888764
No 440
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.83 E-value=4.9e-09 Score=127.87 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR-TVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~-~l~~l~~~g~tvllll~~ 437 (829)
+.+|+|++|++.|++++ ++|+++++|||++|+|+.....+.. +++.+.+.|.++++..|.
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~ 449 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHY 449 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCh
Confidence 47999999999999998 8999999999999999999888865 577777778888888764
No 441
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.82 E-value=1.6e-08 Score=104.51 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=103.3
Q ss_pred chhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044554 24 PSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSALFRLVAATGRNMVVANTFGSFTL 103 (829)
Q Consensus 24 ~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~f~~~aa~~~~~~~A~~~~~~~~ 103 (829)
+++.+.+++.+..++..+++.++...+.|++.|++.+ +++.+++++++..+++.++..+++++.++...+. +.+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 3456799999999999999999999999999999864 6888899999999999999999999999765444 44445
Q ss_pred HHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHHhhhccCC
Q 044554 104 LLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIAVNEFLGN 147 (829)
Q Consensus 104 ~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~~NEf~~~ 147 (829)
..+++++|...|.+.||.|++|+.+++|+.|+.+++-.+.+.+.
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~ 177 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN 177 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc
Confidence 56667899899999999999999999999999999988887653
No 442
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.78 E-value=9.2e-09 Score=109.21 Aligned_cols=164 Identities=18% Similarity=0.159 Sum_probs=86.2
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC--eeEEEEEEcCee-cCccccccc---eeEEecCCCCCCCCCH---H
Q 044554 260 GAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSG--YITGNIAISGYP-KKQETFTCI---SGYCEQNDIHSPNVTV---Y 330 (829)
Q Consensus 260 ~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g--~~~G~i~i~G~~-~~~~~~~~~---~~yv~Q~~~~~~~lTV---~ 330 (829)
..+..||.++|+||+|+|||||++.+++..... .+.--+.+-+.+ .+...+.+. +-.+.+-+. .+...+ +
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 467899999999999999999999999865432 111112212221 111122211 122223222 110000 0
Q ss_pred HHHHHhhhhcC-CCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH--------HHHHHHHHHhhhCCCcce
Q 044554 331 ESLLYSAWLRL-PPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK--------RKRLTIAVELVANPSIIF 401 (829)
Q Consensus 331 E~l~f~a~lr~-~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe--------rqRlsIa~aL~~~p~iL~ 401 (829)
..+..+..++. ..+. .-.+|++ -.+..-.+...+..| +.+|||| |||+++||++..+++|.+
T Consensus 90 ~~~~~a~~~~~~G~~v-----ll~iDei---~r~a~a~~ev~~~~G-~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 90 MVLEKAKRLVEHGKDV-----VILLDSI---TRLARAYNTVVPPSG-KILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred HHHHHHHHHHHCCCCE-----EEEEECH---HHhhhhhhhccccCC-CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 11111111100 0000 0000000 011122333344333 4589999 999999999999999999
Q ss_pred ecCCCCCCCHHHHHH-HHHHHHHHHhCCCeEEEEEec
Q 044554 402 MDEPTSGLDARAAAI-FMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 402 LDEPTsGLD~~~~~~-i~~~l~~l~~~g~tvllll~~ 437 (829)
| ||+.+|+.+... ++ +.++...+.|.+++.|+
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~ 193 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRR 193 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchH
Confidence 9 999999655543 54 45554457777777653
No 443
>PRK14079 recF recombination protein F; Provisional
Probab=98.78 E-value=4.2e-08 Score=109.59 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHhh---------hCCCcceecCCCCCCCHHHHHHHHHHHHH
Q 044554 378 GLSTEKRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIFMRTVRN 423 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~---------~~p~iL~LDEPTsGLD~~~~~~i~~~l~~ 423 (829)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~ 317 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS 317 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc
Confidence 48999999999999999 89999999999999999999999988865
No 444
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.67 E-value=3.9e-08 Score=102.25 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHHhhhCC---CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p---~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
..+|.|+||.+.+...|...+ .++++|||-++|++..+..+++.|++..+.+.-+++..|
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 356999999999998888766 889999999999999999999999887765566666665
No 445
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.66 E-value=4.7e-06 Score=88.82 Aligned_cols=238 Identities=14% Similarity=0.156 Sum_probs=147.3
Q ss_pred HHHhccChhHHHHHHHHHHHHHHHHHHHhcCCCC-----CcCchhhHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhhhHH
Q 044554 545 HWSYWRNPSYNAVRFLFTTVIALAFGTMFWDIGT-----KITKKQDLFNAMGSMYVAVLFLGVKNASSVQPVVSVERTVF 619 (829)
Q Consensus 545 ~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-----~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~p~~~~eR~vf 619 (829)
+......+.+...+....+..+...+..+.+.+. ............|.+.+..++.+.......... ..++..+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~ 120 (286)
T COG0842 42 FQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFR-EREFGTL 120 (286)
T ss_pred heeeeecccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHh-HHhhCcH
Confidence 3344455555555555566666666666655531 111111111223333333333333222111110 1234444
Q ss_pred HhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHH
Q 044554 620 YRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFYGMMAV-AMTPNYH 698 (829)
Q Consensus 620 ~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~g~~i~-a~~p~~~ 698 (829)
.|=..+..-+ ..+++++.+...-...+...+...+..+..|.. ....+......+.+......++|.+++ ...++.+
T Consensus 121 ~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~ 198 (286)
T COG0842 121 ERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQ 198 (286)
T ss_pred HHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5545555433 556666666666666666666666666666632 333444445555555666777787555 2667788
Q ss_pred HHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCCCCcHHHHHHhhhCCccCchh
Q 044554 699 ISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLESGETVEQFLSSYFGFRHDFLG 778 (829)
Q Consensus 699 ~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 778 (829)
.+..++.++..++..++|.+.|.+.+|.|++|+.+++|.+|+.+++-....++.. .+..+
T Consensus 199 ~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~--------------------~~~~~ 258 (286)
T COG0842 199 CASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR--------------------NDGIW 258 (286)
T ss_pred HHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc--------------------hhhHH
Confidence 8888988999999999999999999999999999999999999988765544321 11167
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044554 779 VVAAVVGALPVLFALIFAVGIKAKLLI 805 (829)
Q Consensus 779 ~~~~il~~~~v~f~~~~~~~l~~~~~~ 805 (829)
..+++++++.+++.+++.+.+|+..+.
T Consensus 259 ~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 259 ISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 788999999999999988888876653
No 446
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.64 E-value=1.2e-07 Score=99.99 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=105.5
Q ss_pred chhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044554 24 PSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSALFRLVAATGRNMVVANTFGSFTL 103 (829)
Q Consensus 24 ~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~f~~~aa~~~~~~~A~~~~~~~~ 103 (829)
+++.+.+++.+..++..+++.+++..+.|++.+++. ..++.+++..++..++..++.-++++..+|.+.++.+.++..
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~ 165 (236)
T TIGR01247 88 SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLM 165 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999887554 356666677777888889999999999999999999999999
Q ss_pred HHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHHhhhc
Q 044554 104 LLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIAVNEF 144 (829)
Q Consensus 104 ~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~~NEf 144 (829)
....+.+|.+.|.+.||.|++|+.++||+.|+.|++-..-.
T Consensus 166 ~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~ 206 (236)
T TIGR01247 166 LPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLA 206 (236)
T ss_pred HHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999665433
No 447
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.62 E-value=4.8e-08 Score=115.98 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHHHhhhC----CCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELVAN----PSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~----p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+.+||||+||++||++++.. |++++|||||+|||+.++..+.+.|+++++ +++|+++.|+
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~ 502 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHL 502 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEECh
Confidence 46899999999999999985 689999999999999999999999999875 8999999874
No 448
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.59 E-value=6.1e-07 Score=102.53 Aligned_cols=68 Identities=19% Similarity=0.255 Sum_probs=52.5
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC-----------ccccccceeEEec
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK-----------QETFTCISGYCEQ 319 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~-----------~~~~~~~~~yv~Q 319 (829)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..++. .|.|.+.|+.-. ...+++.+.++.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD--LNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 35689999 999999999999999999999999999976543 588888654321 1124566788876
Q ss_pred CC
Q 044554 320 ND 321 (829)
Q Consensus 320 ~~ 321 (829)
.|
T Consensus 222 ~~ 223 (438)
T PRK07721 222 SD 223 (438)
T ss_pred CC
Confidence 54
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.58 E-value=1.7e-07 Score=106.36 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=85.7
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHH
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYE 331 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 331 (829)
.+++|++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.+.+.|+ . ..+|+|
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~--~gvI~~iGe----------------r-----g~ev~e 199 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD--INVISLVGE----------------R-----GREVKD 199 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC--eEEEEeCCC----------------C-----cccHHH
Confidence 5688885 999999999999999999999999999976542 354444432 1 145555
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhh-------hCCCcceecC
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELV-------ANPSIIFMDE 404 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~-------~~p~iL~LDE 404 (829)
.+.... ..-++... .++ ....+-|.|+|+|+..+.+.+ .++-++++||
T Consensus 200 ~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 200 FIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred HHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 543211 11111110 111 123578999999999998887 6788999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeE
Q 044554 405 PTSGLDARAAAIFMRTVRNTVDTGRTV 431 (829)
Q Consensus 405 PTsGLD~~~~~~i~~~l~~l~~~g~tv 431 (829)
||++.|+. .+|-..+.+.-..|.+.
T Consensus 255 lTr~a~A~--reisl~~~e~p~~G~~~ 279 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPIGGKTL 279 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCCCCeee
Confidence 99999996 44444444433224433
No 450
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.58 E-value=3.6e-07 Score=92.31 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=50.5
Q ss_pred CCCCHHHHH------HHHHHHHhhhCCCcceecCCCCCCC---HHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRK------RLTIAVELVANPSIIFMDEPTSGLD---ARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerq------RlsIa~aL~~~p~iL~LDEPTsGLD---~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
..+|+||+| +.........+|+++++||||+.+| ......+.+.++.+++.|.|++++.|.
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 468999998 4444444567999999999999999 888888889999988889998888764
No 451
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.58 E-value=8.4e-08 Score=121.30 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=58.0
Q ss_pred CCCCCHHHHHHHHHHHHhhh--------CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 376 LNGLSTEKRKRLTIAVELVA--------NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~--------~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
++.|||||++|++||++|+. +|++||+||||+|||+.+...+++.|+++.+.|+||+++.|
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH 1015 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISH 1015 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 56899999999999999995 89999999999999999999999999999988999999986
No 452
>PRK10869 recombination and repair protein; Provisional
Probab=98.57 E-value=8.3e-08 Score=113.24 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHhhh----CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~----~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|+++.|.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~ 492 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHL 492 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 3589999999999999997 5899999999999999999999999999975 6888888864
No 453
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.57 E-value=6.2e-07 Score=105.57 Aligned_cols=119 Identities=23% Similarity=0.388 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHH------cCCccch-hhhccCCCCCCCCHHHHHHHHHHHHhhhCC
Q 044554 325 PNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMEL------VELNTLR-KALVGLPGLNGLSTEKRKRLTIAVELVANP 397 (829)
Q Consensus 325 ~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~------l~L~~~~-~~~vg~~~~~~LSgGerqRlsIa~aL~~~p 397 (829)
..+++.|.+.|...+.+.. .+.+-....+.++.+. +||.-+- ++ ....|||||.||+-+|..+=++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R-----~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSR-----SAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccccc-----cCCCcChhHHHHHHHHHHhcccc
Confidence 4678888888876655321 1111111222333222 3443221 11 23479999999999999998874
Q ss_pred C--cceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec--------------------CcEEEEEcCCCC
Q 044554 398 S--IIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR--------------------GGQEIYVGPLGE 449 (829)
Q Consensus 398 ~--iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~--------------------~G~~vy~G~~~~ 449 (829)
- +.+||||+-||-++.-..+++.|+++.+.|.|++++-|+ ||++++.|++.+
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~ 574 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEE 574 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHH
Confidence 3 569999999999999999999999999999999988763 699999999865
No 454
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.56 E-value=1.8e-07 Score=107.55 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=93.7
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHH
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYES 332 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 332 (829)
.++++.+..++.|++++++||||+||||++..|+++.... .|. +.++++.+|. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~--~G~--------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR--HGA--------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh--cCC--------------CeEEEEeCCc---cchhHHHH
Confidence 3566777778899999999999999999999999853210 111 2367888775 45789999
Q ss_pred HHHhhhhcC-CCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCC-----CcceecCCC
Q 044554 333 LLYSAWLRL-PPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANP-----SIIFMDEPT 406 (829)
Q Consensus 333 l~f~a~lr~-~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p-----~iL~LDEPT 406 (829)
|.+.+.+.. +.... ....+...+..++.+....++..+ |.|--.. ++.-..+++.++ .+|+||+++
T Consensus 305 Lr~~AeilGVpv~~~----~~~~Dl~~aL~~L~d~d~VLIDTa---Gr~~~d~-~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 305 LRIYGKILGVPVHAV----KDAADLRLALSELRNKHIVLIDTI---GMSQRDR-MVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHHHHHHhCCCeecc----CCchhHHHHHHhccCCCeEEeCCC---CcChhhH-HHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 998766542 22111 112334445567766655666542 3332221 233344444444 589999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecC
Q 044554 407 SGLDARAAAIFMRTVRNTVDTGRTVLFLLKRG 438 (829)
Q Consensus 407 sGLD~~~~~~i~~~l~~l~~~g~tvllll~~~ 438 (829)
.+ ..+.+.++.....+.+-+++.+-+
T Consensus 377 ~~------~~l~~i~~~f~~~~~~g~IlTKlD 402 (484)
T PRK06995 377 HG------DTLNEVVQAYRGPGLAGCILTKLD 402 (484)
T ss_pred cH------HHHHHHHHHhccCCCCEEEEeCCC
Confidence 87 334455555555565556665433
No 455
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.56 E-value=9.1e-08 Score=113.74 Aligned_cols=59 Identities=15% Similarity=0.369 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHhh----------hCCCcceecCCC-CCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELV----------ANPSIIFMDEPT-SGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~----------~~p~iL~LDEPT-sGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
..||||||||++||++|+ .+|++++||||| ++||..+...+.+.|+++ +|.+|+++.|+
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~ 536 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHK 536 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECc
Confidence 579999999999999887 599999999998 789999999999999998 58898888875
No 456
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=1.3e-07 Score=120.17 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHHhhh----------CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRKRLTIAVELVA----------NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~----------~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
++.|||||++|++||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|+++.|.
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 56899999999999999985 799999999999999999999999999998889999888764
No 457
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.53 E-value=9.3e-07 Score=87.87 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+.....|-||-=---+.+. ..+.-+.+||||-++|.+.-+.+++..|+++++.|.-+|+..|
T Consensus 125 ~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATH 186 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186 (233)
T ss_pred cchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3345678888654444443 3466799999999999999999999999999999977777665
No 458
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.51 E-value=2.7e-06 Score=83.77 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=95.0
Q ss_pred hhhhhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChH--HHHHHHHHHHHHHHHHHHHHHHH
Q 044554 613 SVERTVFYRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTAT--KFFWYLFFVFFTLLYFTFYGMMA 690 (829)
Q Consensus 613 ~~eR~vf~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~--~f~~f~~~~~l~~~~~~~~g~~i 690 (829)
..|+..+.|-+.+-. +...++++|++...-..+++.++..++.+. .|.+.... ..+.++++..+.......+|..+
T Consensus 15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~ 92 (152)
T TIGR01248 15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAM 92 (152)
T ss_pred HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888887776 789999999999999999988877777754 48776532 22233333333344445555555
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHH
Q 044554 691 VAMTPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLV 745 (829)
Q Consensus 691 ~a~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~ 745 (829)
+...++.+. .....++..++.+.+|.+.|.++||+|++|+-+++|++|+.+++-
T Consensus 93 a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 93 ALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 544555544 334566777888889999999999999999999999999999875
No 459
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.50 E-value=6.9e-08 Score=109.25 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=43.0
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEE-EEEEcCeecC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITG-NIAISGYPKK 306 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G-~i~i~G~~~~ 306 (829)
..+|++||+++++||+++|+|||||||||||+ +|...+ .+| +|.++|.+..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~--~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKF--SEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCC--CCCCEEEECCEECC
Confidence 46899999999999999999999999999999 554333 244 8999998764
No 460
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=2.1e-07 Score=120.55 Aligned_cols=68 Identities=21% Similarity=0.324 Sum_probs=57.9
Q ss_pred hhhccCCCCCCCCHHHHH------HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-----CCCeEEEEEe
Q 044554 368 KALVGLPGLNGLSTEKRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-----TGRTVLFLLK 436 (829)
Q Consensus 368 ~~~vg~~~~~~LSgGerq------RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-----~g~tvllll~ 436 (829)
|+.++.+ ..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.+||++.|
T Consensus 1191 ~~~~~~~--~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALDMR--GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecCCC--CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 4444432 479999999 99999999999999999999999999999999999988742 3788998887
Q ss_pred c
Q 044554 437 R 437 (829)
Q Consensus 437 ~ 437 (829)
+
T Consensus 1269 d 1269 (1311)
T TIGR00606 1269 D 1269 (1311)
T ss_pred C
Confidence 5
No 461
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.45 E-value=7.9e-07 Score=93.58 Aligned_cols=117 Identities=15% Similarity=0.278 Sum_probs=89.0
Q ss_pred chhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHH
Q 044554 24 PSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSALFRLVAATG---RNMVVANTFGS 100 (829)
Q Consensus 24 ~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~f~~~aa~~---~~~~~A~~~~~ 100 (829)
+++.+.+++.+..++..+.+.+++. +++++.|++...+.+ ..++...+......+++-++++++ ++.+.+..+++
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 154 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN 154 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 6789999998888888887766665 556778998765433 333344444445555555666666 45555588888
Q ss_pred HHHHHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHHhh
Q 044554 101 FTLLLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIAVN 142 (829)
Q Consensus 101 ~~~~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~~N 142 (829)
+....+.+++|.+.|.+.||.|++|+.+++|+.|+.+++-.-
T Consensus 155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~ 196 (232)
T TIGR00025 155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQA 196 (232)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 889999999999999999999999999999999999987543
No 462
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.43 E-value=4.6e-07 Score=88.50 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCC----------CCCHHHHHHHHHHHHHHHhCCCeEEEEEecC
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTS----------GLDARAAAIFMRTVRNTVDTGRTVLFLLKRG 438 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTs----------GLD~~~~~~i~~~l~~l~~~g~tvllll~~~ 438 (829)
.+.++.++...+++...+|+++++||+++ +.|......+.+++....+.+.|++++.|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 45566677888888899999999999994 4555556666666666555688999988754
No 463
>PRK13695 putative NTPase; Provisional
Probab=98.40 E-value=3.9e-07 Score=91.62 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCC--CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEP--TSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEP--TsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
.+||+|+.+..+.+..+.+|+++++||| +.++| ..+.+.+.++.+.|++++++.|+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~ 135 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHR 135 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECc
Confidence 5999999999999999999999999995 43444 44566777766778999999875
No 464
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.35 E-value=2.2e-06 Score=94.24 Aligned_cols=42 Identities=26% Similarity=0.281 Sum_probs=34.1
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEc
Q 044554 258 VSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAIS 301 (829)
Q Consensus 258 vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~ 301 (829)
+++.+++|+.++|.||+|||||||+++|++..++. .+.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~--~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD--ERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc--ccEEEEc
Confidence 56788999999999999999999999999976542 3445554
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.35 E-value=7.9e-07 Score=90.50 Aligned_cols=84 Identities=21% Similarity=0.115 Sum_probs=58.8
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCC--CCCCCCCHHHH
Q 044554 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQND--IHSPNVTVYES 332 (829)
Q Consensus 255 L~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~--~~~~~lTV~E~ 332 (829)
.+=+.+.+++|+.++|+||||||||||+++|+|..++. .|.+.+.+...-....+..++++.|.+ ...+..|+.|.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence 33445568899999999999999999999999976542 577888764322122233456665544 34567899999
Q ss_pred HHHhhhhc
Q 044554 333 LLYSAWLR 340 (829)
Q Consensus 333 l~f~a~lr 340 (829)
+..+.+.+
T Consensus 93 l~~~lR~~ 100 (186)
T cd01130 93 LRSALRMR 100 (186)
T ss_pred HHHHhccC
Confidence 98776543
No 466
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.34 E-value=6e-07 Score=101.95 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=68.7
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCe-eEEEEEEcCeecCc---------cccccceeEEecC
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGY-ITGNIAISGYPKKQ---------ETFTCISGYCEQN 320 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~-~~G~i~i~G~~~~~---------~~~~~~~~yv~Q~ 320 (829)
...+++++ +.+.+||+++|+|+||+|||||+++|+|..++.. +-|.+-.+|.+... ...+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 9999999999999999999999999999755432 23556555544321 1124468999999
Q ss_pred CCCCCCCCHHHHHHHhhhh
Q 044554 321 DIHSPNVTVYESLLYSAWL 339 (829)
Q Consensus 321 ~~~~~~lTV~E~l~f~a~l 339 (829)
+.....+++.|++.+.+..
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 9999999999999876653
No 467
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.34 E-value=2.9e-06 Score=89.50 Aligned_cols=145 Identities=20% Similarity=0.199 Sum_probs=84.3
Q ss_pred eeeee-EEEEeCCeEEEEEcCCCCCHHHHHHHHhC-CCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHH
Q 044554 254 LLNGV-SGAFRPGVLTALMGVSGAGKTTLLDVLAG-RKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYE 331 (829)
Q Consensus 254 iL~~v-s~~i~~Gei~al~G~sGaGKTTLL~~LaG-~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 331 (829)
-||.+ .+-+++|+++.|.|++|+|||||...++- ....| +.+.|+..+. +.++
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g-------------------~~~~y~~~e~------~~~~ 67 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQG-------------------KKVYVITTEN------TSKS 67 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCC-------------------CEEEEEEcCC------CHHH
Confidence 45554 56799999999999999999999998852 11111 1234444321 2222
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhh--CCCcceecCCCCC-
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVA--NPSIIFMDEPTSG- 408 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~--~p~iL~LDEPTsG- 408 (829)
-+.-...+. .+. ++.+. -+...+.+.... .....|.++++.+....+++. +|+++++||||+.
T Consensus 68 ~~~~~~~~g----~~~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 68 YLKQMESVK----IDI-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHCC----CCh-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 222111111 110 00000 011111111010 112356788999999999997 8999999999965
Q ss_pred --CCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 409 --LDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 409 --LD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+|......+++.++++++.|.|++++.|.
T Consensus 134 ~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~ 164 (234)
T PRK06067 134 TYAEEDDILNFLTEAKNLVDLGKTILITLHP 164 (234)
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 44555556666677777778888887753
No 468
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.33 E-value=1.1e-06 Score=93.00 Aligned_cols=134 Identities=21% Similarity=0.310 Sum_probs=78.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcC-eecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG-YPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 343 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G-~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~ 343 (829)
|++..|+||+|+|||||.--++=....| .=...+ .... ....+-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G----~~~~g~~~~~~---~~~~Vlyi~~Ed---------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALG----KNLFGGGLKVT---EPGRVVYLSAED---------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcC----ccccCCccccC---CCceEEEEECCC----------------------
Confidence 6789999999999999988887422211 111110 1110 122344544222
Q ss_pred CCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHH----------------HhhhCCCcceecCCCC
Q 044554 344 EVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAV----------------ELVANPSIIFMDEPTS 407 (829)
Q Consensus 344 ~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~----------------aL~~~p~iL~LDEPTs 407 (829)
+.++..++++.+.+.+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 --~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~ 121 (239)
T cd01125 52 --PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLV 121 (239)
T ss_pred --CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChH
Confidence 11222334555555555444333321 1133444443332 235799999999 765
Q ss_pred ------CCCHHHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 408 ------GLDARAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 408 ------GLD~~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
.+|+.....+++.|++++++ |.+|+++.|.
T Consensus 122 ~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~ 158 (239)
T cd01125 122 SFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHV 158 (239)
T ss_pred HhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 47999999999999999865 7888877653
No 469
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.30 E-value=3.6e-06 Score=82.95 Aligned_cols=114 Identities=13% Similarity=0.041 Sum_probs=88.9
Q ss_pred chhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChh--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044554 24 PSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAG--RFLKQYLLLFFLNQMTSALFRLVAATGRNMVVANTFGSF 101 (829)
Q Consensus 24 ~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~--~Ff~f~l~~~~~~~~~~~~f~~~aa~~~~~~~A~~~~~~ 101 (829)
+++.+.+++++...-..+++.++..++.+++ |.+.+.+ ..+.++++..+.......+.-.++...++.+..+ ..++
T Consensus 30 ~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~~~~~~~~~~-~~~~ 107 (152)
T TIGR01248 30 HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVMAMALRKEGRFAME-ALEL 107 (152)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHH
Confidence 7889999999999999999988777777544 9987742 2445555556666677777777766667665544 4566
Q ss_pred HHHHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHH
Q 044554 102 TLLLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAI 139 (829)
Q Consensus 102 ~~~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al 139 (829)
+...+...+|-+.|.++||.|++|+.++||+.|+.|++
T Consensus 108 v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~ 145 (152)
T TIGR01248 108 AQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEAC 145 (152)
T ss_pred HHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHH
Confidence 67777777888899999999999999999999999986
No 470
>PRK03918 chromosome segregation protein; Provisional
Probab=98.30 E-value=8.7e-07 Score=111.00 Aligned_cols=62 Identities=24% Similarity=0.327 Sum_probs=54.2
Q ss_pred CCCCCHHHHH------HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerq------RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+..||||||+ |+++|++++.+|+++++||||+|||+..+..+.+.|+.+++.+.+|+++.|+
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~ 853 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHD 853 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4579999999 4555667889999999999999999999999999999987777888888874
No 471
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.28 E-value=1e-05 Score=75.87 Aligned_cols=42 Identities=36% Similarity=0.446 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHH
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR 419 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~ 419 (829)
...+++..+..+.++--.+|+++++||+..-.+.........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~ 101 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLL 101 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHh
Confidence 467777777777777777789999999999999998877665
No 472
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.27 E-value=4.1e-06 Score=89.55 Aligned_cols=128 Identities=15% Similarity=0.086 Sum_probs=102.8
Q ss_pred hhhhhccCCCC--------chhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 044554 13 VFYKQRDLRFY--------PSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSALFRL 84 (829)
Q Consensus 13 i~~kq~~~~fy--------~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~f~~ 84 (829)
++.|.|+.+.+ +++.+.+++++.+.-..+++.++...+.+++ |.... ...+..+.++++..+++.++..+
T Consensus 81 ~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~ 158 (253)
T TIGR01291 81 TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSML 158 (253)
T ss_pred HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665553 6788999999988777777776666655544 43332 34555556667788888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHHhh
Q 044554 85 VAATGRNMVVANTFGSFTLLLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIAVN 142 (829)
Q Consensus 85 ~aa~~~~~~~A~~~~~~~~~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~~N 142 (829)
+++++++.+.+..+.++....+...+|-+.|.+.||.|++|+.++||+.|+.|++=.-
T Consensus 159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~ 216 (253)
T TIGR01291 159 VAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV 216 (253)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999986443
No 473
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.26 E-value=5.6e-06 Score=85.19 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=32.4
Q ss_pred HHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecC
Q 044554 388 TIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKRG 438 (829)
Q Consensus 388 sIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~~ 438 (829)
+++++|..+|+++++|||. |..+...++ +.+..|..++..+|..
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~ 109 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTN 109 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCC
Confidence 4778888999999999996 665544333 3456789988888753
No 474
>PRK01156 chromosome segregation protein; Provisional
Probab=98.19 E-value=2.5e-06 Score=107.10 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHH------HHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH-hC-C-CeEEEEEec
Q 044554 376 LNGLSTEKRKRLTI------AVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTV-DT-G-RTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsI------a~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~-~~-g-~tvllll~~ 437 (829)
+..||||||+|++| |++++.+|++++|||||+|||......+.+.++... .. | .+++++.|+
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~ 869 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHH 869 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECc
Confidence 56899999999975 589999999999999999999999999999998654 33 3 478888764
No 475
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.13 E-value=0.00055 Score=72.67 Aligned_cols=222 Identities=15% Similarity=0.040 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHhcCC-CCCcCchhhHHHHHhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 044554 538 MVCLWKQHWSYWRNPSYNAVRFLFTTVIALAFGTMFWDI-GTKITKKQDLFNAMGSMYVAVLFLGVKNASSVQPVVSVER 616 (829)
Q Consensus 538 ~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~-~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~p~~~~eR 616 (829)
+.+.||.++.+.|+|.....-.+..++.|+.. ..|... +....+..+...-.+...+..++ +.|.. --
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~l--~~ 70 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPWVFLF--------LIPAI--TM 70 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHHHHHH--------HHHHH--HH
Confidence 35789999999999988866666666666442 222110 00000112222221111111111 11222 12
Q ss_pred hHHHhHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---HHhhhhhcccCCc---cChHHHHHHHHHHHHHHHH
Q 044554 617 TVFYRERAAGLY--------SAFPYAFAQVLIEIPYIFVQAV---TYGVLVYAMIGFE---WTATKFFWYLFFVFFTLLY 682 (829)
Q Consensus 617 ~vf~RE~~~~~Y--------~~~ay~la~~l~elP~~~~~~~---if~~i~Y~~~Gl~---~~~~~f~~f~~~~~l~~~~ 682 (829)
..+.|||++|.. +...+.++|.+.-.-..++..+ ++.....+ .|.+ .+.+.++..++..++...+
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSV 149 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHH
Confidence 455677777764 5678899999988655443332 12222221 1221 2344444444444455567
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCCCCcH
Q 044554 683 FTFYGMMAVAMTPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLESGETV 762 (829)
Q Consensus 683 ~~~~g~~i~a~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~~~~~ 762 (829)
..++|.++++++.+...|..++-.+...+.+.-+.+.+ ...|++.+|+.|+||..|..+.. .+ ..
T Consensus 150 ~~aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~l~~~sp~~~~~~~~-----~g-~i-------- 214 (240)
T TIGR03518 150 YTAIGLFASSLTENQIVAFIIAVFLCFLFYFGFDGLAS-LLWGGSAYTISELGLSYHYESIS-----RG-VI-------- 214 (240)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHcCHHHHHHHHH-----cC-cc--------
Confidence 78999999999999888866554332222111122211 12478889999999987764422 11 00
Q ss_pred HHHHHhhhCCccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 044554 763 EQFLSSYFGFRHDFLGVVAAVVGALPVLFALIFAVGIK 800 (829)
Q Consensus 763 ~~~l~~~~g~~~~~~~~~~~il~~~~v~f~~~~~~~l~ 800 (829)
.+.++...+.+.+++..++...++
T Consensus 215 --------------~~~~~v~~~~~~~~~l~l~~~~~~ 238 (240)
T TIGR03518 215 --------------DSRDVIYFLSITVLFLALTKLQLK 238 (240)
T ss_pred --------------cHhHHHHHHHHHHHHHHHHHHHHh
Confidence 135566667777777766665544
No 476
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.11 E-value=2.1e-05 Score=97.23 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=40.1
Q ss_pred hhhCCCcceecCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 393 LVANPSIIFMDEPTSGL-DARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 393 L~~~p~iL~LDEPTsGL-D~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+..+|+++++|||+.+| |+..+..+.+.++++.+.|.+++++.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~ 694 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQS 694 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 35799999999999999 7999999999999998888888888764
No 477
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.11 E-value=3e-06 Score=109.04 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHHhh----hCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~----~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+..||||||+|++||++++ .+|++++|||||+|||+.+...+.+.|+++++ +.++|++.|+
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~ 1151 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHN 1151 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcC
Confidence 4579999999999999984 57799999999999999999999999999865 4778888765
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.10 E-value=2.6e-06 Score=87.45 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=61.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhh-hcCCCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAW-LRLPPEV 345 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~-lr~~~~~ 345 (829)
+++|.||||||||||.+.|++.... ++ +.++.+|+.+ ..++..+....... ...|...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~----~~----------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN----PK----------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC----CC----------------eEEEEecccc-cccccccHHHhccCCCCCCCcc
Confidence 5799999999999999999986521 11 2233333322 22222222221110 0112112
Q ss_pred CHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCH
Q 044554 346 DSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA 411 (829)
Q Consensus 346 ~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~ 411 (829)
+. +...+.++.+...+..+.. ....|.|++++..+ .+.+++++++|+|..+.++
T Consensus 60 ~~----~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 DF----DLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cH----HHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 21 1233455555443322222 13567777766554 5678999999999999986
No 479
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.10 E-value=8.9e-06 Score=92.59 Aligned_cols=84 Identities=20% Similarity=0.278 Sum_probs=62.1
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcC-
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISG- 302 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G- 302 (829)
+..++.++++..+. ....+++.++ .+.+||.++|+||||+|||||+++|++...+. .|.+.+.|
T Consensus 137 p~~~~r~~v~~~l~------------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd--~gvv~liGe 201 (450)
T PRK06002 137 PPAMTRARVETGLR------------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD--TVVIALVGE 201 (450)
T ss_pred CCCeEeecceEEcC------------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--eeeeeeccc
Confidence 34577777777663 2367889996 89999999999999999999999999976543 47777754
Q ss_pred --eecCc-------cccccceeEEecCCC
Q 044554 303 --YPKKQ-------ETFTCISGYCEQNDI 322 (829)
Q Consensus 303 --~~~~~-------~~~~~~~~yv~Q~~~ 322 (829)
.++.. ...++.+++|+|.|.
T Consensus 202 rgrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 202 RGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred CCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 33221 112356899999874
No 480
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.07 E-value=2e-05 Score=88.08 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=33.3
Q ss_pred HHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 389 IAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 389 Ia~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
++.+|-.+|+++++||+. |..++...++ .+..|.+|+..+|.
T Consensus 188 l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha 229 (343)
T TIGR01420 188 LRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHT 229 (343)
T ss_pred HHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcC
Confidence 566788899999999997 8888865544 35679998888875
No 481
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.05 E-value=2.9e-06 Score=85.71 Aligned_cols=66 Identities=23% Similarity=0.245 Sum_probs=43.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc-ccc-cceeEEecCCCCCCCCCHHHHHHH
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE-TFT-CISGYCEQNDIHSPNVTVYESLLY 335 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~-~~~-~~~~yv~Q~~~~~~~lTV~E~l~f 335 (829)
+||+++|+|+||||||||+++|+|.... +.++|.+.... ..+ ...|+.+|+....+..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999997643 35666554321 111 124566666544455566555554
No 482
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=97.99 E-value=3.9e-05 Score=81.89 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=93.3
Q ss_pred CchhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044554 23 YPSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSALFRLVAATGRNMVVANTFGSFT 102 (829)
Q Consensus 23 y~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~f~~~aa~~~~~~~A~~~~~~~ 102 (829)
.+++.+.+++++...-..+++.++.-.+.++ .|.+.+....+..+..+++..+...++.-++++++++.+.++.+.+++
T Consensus 99 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~ 177 (253)
T TIGR03861 99 LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFV 177 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3677889999999988888877665444433 366665444555555666677888899999999999999999999999
Q ss_pred HHHHHHhhcceeCcCCc---ccchhhhhhhchHHHHHHHH
Q 044554 103 LLLILVLEGFVLSREDI---KKWWKWAYWCSPLMYAQNAI 139 (829)
Q Consensus 103 ~~~~~l~~Gf~i~~~~m---~~w~~Wi~~i~P~~ya~~al 139 (829)
+..+...+|-+.|.+.+ |.|++|+.++||+.|..|++
T Consensus 178 ~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~ 217 (253)
T TIGR03861 178 IFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELV 217 (253)
T ss_pred HHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHH
Confidence 99999999999897655 88999999999999998876
No 483
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=1.1e-05 Score=90.81 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHhhh---------CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELVA---------NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~---------~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.+|.||+|++.||..|+. +|+||+||||+++||...+..+++.|++. |..+++..+
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~ 339 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAI 339 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEec
Confidence 589999999999999999 99999999999999999999999999763 566666554
No 484
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.96 E-value=8.8e-06 Score=67.30 Aligned_cols=33 Identities=39% Similarity=0.711 Sum_probs=27.0
Q ss_pred eeeeEEEEeC-CeEEEEEcCCCCCHHHHHHHHhC
Q 044554 255 LNGVSGAFRP-GVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 255 L~~vs~~i~~-Gei~al~G~sGaGKTTLL~~LaG 287 (829)
.++.++++.+ |+++.|.|+|||||||||+++.=
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445667775 57999999999999999999875
No 485
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.92 E-value=0.00014 Score=90.53 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=43.6
Q ss_pred HHHHhhhCCCcceecCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 389 IAVELVANPSIIFMDEPTSGL-DARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 389 Ia~aL~~~p~iL~LDEPTsGL-D~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|++++..+|+++++|||+.+| |+..+..+.+.++.+.+.|.+++++.|+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs 729 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQS 729 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 577788999999999999999 7999999999999998888888887754
No 486
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.88 E-value=1.3e-05 Score=103.24 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHHhhh----CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~----~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+..||||||++++||++++. +|++++||||++|||+.....+.+.|+++++ +..+|++.|+
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~ 1136 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLR 1136 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECc
Confidence 45799999999999999985 6799999999999999999999999999865 4567777765
No 487
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=97.88 E-value=2.6e-05 Score=71.65 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=49.1
Q ss_pred cHHHHHHhhhCCccCchhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCceEEEEe
Q 044554 761 TVEQFLSSYFGFRHDFLGVVAAVVGALPVLFALIFAVGIKAKLLIGILGNHPSVALLHI 819 (829)
Q Consensus 761 ~~~~~l~~~~g~~~~~~~~~~~il~~~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 819 (829)
++.+|+...|+++.+|+|||++|+++|+++|.++.++++++++.. ..++++.+.+=
T Consensus 32 ~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~---~~~~~~l~f~r 87 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFE---KSGGEVLVFKR 87 (103)
T ss_pred eHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccc---CCCccEEEEeC
Confidence 678999999999999999999999999999999999999999987 45556655543
No 488
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.84 E-value=0.00013 Score=74.00 Aligned_cols=48 Identities=13% Similarity=0.037 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHH--HHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC
Q 044554 377 NGLSTEKRKRLT--IAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT 427 (829)
Q Consensus 377 ~~LSgGerqRls--Ia~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~ 427 (829)
..+|+||++++. +.+.+-.. . ..+.|+|++|.....++.+.|.++.++
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~~-~--~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 146 DKLKKGERKKQLKKVRKALKFG-D--DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ccCCHHHHHHHHHHHHHHHHhc-C--CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 358999999987 44444332 2 223399999999999999999988764
No 489
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=0.0089 Score=64.26 Aligned_cols=205 Identities=12% Similarity=0.139 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHhccChhHH-----HHHHHHHHHHHHHHHHHhcCCCCCcCchhhHHHHHhHHHHHHHHHHHhhhhh
Q 044554 533 FFTQCMVCLWKQHWSYWRNPSYN-----AVRFLFTTVIALAFGTMFWDIGTKITKKQDLFNAMGSMYVAVLFLGVKNASS 607 (829)
Q Consensus 533 ~~~Q~~~l~~R~~~~~~R~~~~~-----~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~ 607 (829)
.+..+..|.+|..++.+|+...- ..=+.+.++++++.|.++-+-+. + --..-..|.+.....-.+ ...
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~---~-~~~~l~~G~~~w~f~~~~---i~~ 88 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGL---N-FLAYLLAGLILWFFFSEA---ISE 88 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc---c-hHHHHHHHHHHHHHHHHH---HHh
Confidence 45566777889988877776422 23345666666666666643211 1 011112232211111111 111
Q ss_pred hhhhhhhhhhHHHhHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccChHHHHHHHHHHHHHHHHHHHH
Q 044554 608 VQPVVSVERTVFYRERAAGLY-SAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIGFEWTATKFFWYLFFVFFTLLYFTFY 686 (829)
Q Consensus 608 v~p~~~~eR~vf~RE~~~~~Y-~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~f~~f~~~~~l~~~~~~~~ 686 (829)
..-.+.++..++.| .+ ++..+.+++++.++--..+..++....+-+.-+.+ ..........+.+..+++.++
T Consensus 89 ~~~s~~~n~~li~k-----~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~ 161 (263)
T COG1682 89 GAGSVVANAALIKK-----INFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGL 161 (263)
T ss_pred HHHHhhhhHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHH
Confidence 12233344455443 44 88999999999998766665555444443333332 344444444555556677788
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCC
Q 044554 687 GMMAVAMTPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGD 751 (829)
Q Consensus 687 g~~i~a~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~ 751 (829)
|++++.++.-..--..+-+.+.-+++..+|.+=|.+.+|..++|+..+||+.+.+|++=..-+++
T Consensus 162 ~l~~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 162 GLILASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred HHHHHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 88888887666555566778888899999999999999999999999999999999887776655
No 490
>PRK02224 chromosome segregation protein; Provisional
Probab=97.83 E-value=2.4e-05 Score=98.10 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=53.3
Q ss_pred CCCCCHHHHH------HHHHHHHhhhC-----C-CcceecCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEEEec
Q 044554 376 LNGLSTEKRK------RLTIAVELVAN-----P-SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGR-TVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerq------RlsIa~aL~~~-----p-~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~-tvllll~~ 437 (829)
+..||||||+ |++++++++.+ | +++++||||++||+.....+.+.|+.+.+.|. +||++.|+
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~ 853 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHD 853 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4589999999 89999998864 3 67999999999999999999999999886665 68888764
No 491
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.82 E-value=4.2e-06 Score=91.27 Aligned_cols=153 Identities=18% Similarity=0.352 Sum_probs=0.0
Q ss_pred hhHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC---CccChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044554 616 RTVFYRERAAGLYSAFPYAFAQVLIEIPYIFVQAVTYGVLVYAMIG---FEWTATKFFWYLFFVFFTLLYFTFYGMMAVA 692 (829)
Q Consensus 616 R~vf~RE~~~~~Y~~~ay~la~~l~elP~~~~~~~if~~i~Y~~~G---l~~~~~~f~~f~~~~~l~~~~~~~~g~~i~a 692 (829)
+.+..|-+.+|. +...|++++++..+...++..+++.++ ..| ++.. .++..++.+++..++..+++.+++.
T Consensus 188 ~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~is~ 261 (344)
T PF12698_consen 188 SGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISFGFLISS 261 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556665 889999999999999998888777664 344 4433 4444556666677788899999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccCccCCCCcchHhHHhhhhChHHHHHHHHHHHHhCCCccccCCCCcHHHHHHhhhCC
Q 044554 693 MTPNYHISAIIVSSFNGLWNVFSGYIIPKTRIPIWWRWYYWACPISWTLYGLVASQFGDKQDRLESGETVEQFLSSYFGF 772 (829)
Q Consensus 693 ~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~yisp~~y~~~~l~~nef~~~~~~~~~~~~~~~~l~~~~g~ 772 (829)
++++...|..+++++..+...++|.+.+.+++|.+++|+.++.|..|..+++....+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~~--------------------- 320 (344)
T PF12698_consen 262 FFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNIIYGD--------------------- 320 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHHHhc---------------------
Confidence 99999999888888877677777777888899999999999999999887765432211
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHH
Q 044554 773 RHDFLGVVAAVVGALPVLFALIFA 796 (829)
Q Consensus 773 ~~~~~~~~~~il~~~~v~f~~~~~ 796 (829)
....|..+++++++.+++.+++.
T Consensus 321 -~~~~~~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 321 -WSEIWISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp ------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHh
Confidence 11145666777777777666543
No 492
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.81 E-value=1.1e-06 Score=102.66 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=88.2
Q ss_pred eeeee-EEEEeCCeEEEEEcCCCCCHHHHHHHHh--CCCCCCeeEEEEEEcCeecCccccc---cceeEEecCCCCCCCC
Q 044554 254 LLNGV-SGAFRPGVLTALMGVSGAGKTTLLDVLA--GRKTSGYITGNIAISGYPKKQETFT---CISGYCEQNDIHSPNV 327 (829)
Q Consensus 254 iL~~v-s~~i~~Gei~al~G~sGaGKTTLL~~La--G~~~~g~~~G~i~i~G~~~~~~~~~---~~~~yv~Q~~~~~~~l 327 (829)
=||.+ .+=+.+|..+.|.|++|||||||..-.+ |....| +..+.+...... ..+. +..|+-.|+...-
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g--e~~lyvs~eE~~-~~l~~~~~~~G~~~~~~~~~--- 82 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD--EPGVFVTFEESP-QDIIKNARSFGWDLQKLVDE--- 82 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEecCH-HHHHHHHHHcCCCHHHHhhc---
Confidence 46665 5679999999999999999999988763 422212 223444433211 1111 1223322211000
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHH--HHhhhCCCcceecCC
Q 044554 328 TVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIA--VELVANPSIIFMDEP 405 (829)
Q Consensus 328 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa--~aL~~~p~iL~LDEP 405 (829)
+++.+ +..+ +. ...+.+++.+++.+..+.+. +.+|+|++||+.|+ .+|..+|+..
T Consensus 83 ---g~l~~---~~~~---~~----~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 83 ---GKLFI---LDAS---PD----PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ---CceEE---EecC---ch----hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 00000 0000 00 00122345556666666554 36999999999999 6666655443
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 406 TSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 406 TsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
...+..+.++++.+++.|.|++++.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~ 166 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTER 166 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 467788899999998889999999875
No 493
>PRK15066 inner membrane transport permease; Provisional
Probab=97.80 E-value=9.8e-05 Score=79.05 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=88.8
Q ss_pred CchhhHHHHHHHHhhhHHHHHHHhhhheeecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044554 23 YPSWAYALPAWILKIPISYVEVSVWVFLTYYVVGFDPNAGRFLKQYLLLFFLNQMTSALFRLVAATGRNMVVANTFGSFT 102 (829)
Q Consensus 23 y~~~a~~la~~~~~lp~~~~~~~if~~i~Yfm~gl~~~a~~Ff~f~l~~~~~~~~~~~~f~~~aa~~~~~~~A~~~~~~~ 102 (829)
.+++.+.++.++...-..+++.++..++.++..|...+ ....++..+++.....+...-++++++++...++.+.+..
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 47778888888877767677666655555555466543 2334444444545555556777788899999999999999
Q ss_pred HHHHHHhhcceeCcCCcccchhhhhhhchHHHHHHHHH
Q 044554 103 LLLILVLEGFVLSREDIKKWWKWAYWCSPLMYAQNAIA 140 (829)
Q Consensus 103 ~~~~~l~~Gf~i~~~~m~~w~~Wi~~i~P~~ya~~al~ 140 (829)
+..+...+|-+.|.+.+|.|++|+.++||+.|..|++=
T Consensus 179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R 216 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFR 216 (257)
T ss_pred HHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHH
Confidence 99999999999999999999999999999999988763
No 494
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.78 E-value=1e-05 Score=84.88 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=27.9
Q ss_pred eeeee-EEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 044554 254 LLNGV-SGAFRPGVLTALMGVSGAGKTTLLDVLA 286 (829)
Q Consensus 254 iL~~v-s~~i~~Gei~al~G~sGaGKTTLL~~La 286 (829)
-||++ .+-+++|++++|.|++|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 45664 5679999999999999999999988665
No 495
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.77 E-value=3.5e-05 Score=69.08 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=36.3
Q ss_pred CCCCHHHH-HHHHHHHHhh------h------CCCcceecCCCCCCCHHHHHHHHHHHHH
Q 044554 377 NGLSTEKR-KRLTIAVELV------A------NPSIIFMDEPTSGLDARAAAIFMRTVRN 423 (829)
Q Consensus 377 ~~LSgGer-qRlsIa~aL~------~------~p~iL~LDEPTsGLD~~~~~~i~~~l~~ 423 (829)
.++||||| ..+.++.+++ . .|++++||||+++||......+++.+++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 47999999 5554444432 2 2679999999999999999999999875
No 496
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.76 E-value=5.7e-05 Score=93.68 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=30.3
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
..+=+|+++. ..+.++.|.|||++||||+||.++-
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l 629 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVAL 629 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHH
Confidence 4577788887 6778999999999999999999875
No 497
>PRK08149 ATP synthase SpaL; Validated
Probab=97.75 E-value=6.5e-05 Score=85.45 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=54.1
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCe-eEEEEEEcCeecCc-------cccccceeEEecCC
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGY-ITGNIAISGYPKKQ-------ETFTCISGYCEQND 321 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~-~~G~i~i~G~~~~~-------~~~~~~~~yv~Q~~ 321 (829)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...... +.|.|-.+|.+... ....+++++|....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 46799999 9999999999999999999999999999765442 45889898887532 11224567776543
No 498
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.72 E-value=4.1e-05 Score=99.37 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHH----HHHH--------hhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEE
Q 044554 376 LNGLSTEKRKRLT----IAVE--------LVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLL 435 (829)
Q Consensus 376 ~~~LSgGerqRls----Ia~a--------L~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll 435 (829)
..+||||||||+. +|++ +..+|++++|||||+|||+.+...++++++++ |.++|+..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s 1313 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTS 1313 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEc
Confidence 3689999999996 4644 55799999999999999999999999999887 66776654
No 499
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.69 E-value=3.8e-05 Score=78.16 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
|++++|+||||||||||+++|++.... ++.+++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~-----~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT-----QLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC-----eEEEcCEEC
Confidence 789999999999999999999986542 355555543
No 500
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.69 E-value=5.1e-05 Score=85.00 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=45.9
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeee-----------eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLN-----------GVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
..+.|+||++.|+ +++.+|+ |+++.+.+|+.++|+||+|+|||||++.|+...
T Consensus 129 ~ri~Fe~LTf~YP------------~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 129 NRVLFENLTPLYP------------NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCeEEEEeeecCC------------CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 4699999999984 2235675 999999999999999999999999999999854
Done!