Query 044554
Match_columns 829
No_of_seqs 545 out of 4794
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 2E-40 6.8E-45 347.6 26.4 205 227-447 2-229 (235)
2 3tui_C Methionine import ATP-b 100.0 1.2E-40 4.2E-45 367.6 26.1 205 226-449 24-250 (366)
3 2pcj_A ABC transporter, lipopr 100.0 4.1E-40 1.4E-44 342.7 26.6 188 226-436 4-198 (224)
4 3rlf_A Maltose/maltodextrin im 100.0 3.6E-40 1.2E-44 366.0 26.1 200 226-449 3-220 (381)
5 3fvq_A Fe(3+) IONS import ATP- 100.0 3E-40 1E-44 364.2 24.6 200 226-449 4-225 (359)
6 2olj_A Amino acid ABC transpor 100.0 6E-40 2E-44 349.2 25.4 199 226-447 24-243 (263)
7 3gfo_A Cobalt import ATP-bindi 100.0 3.8E-40 1.3E-44 352.7 23.6 201 226-448 7-229 (275)
8 1vpl_A ABC transporter, ATP-bi 100.0 9E-40 3.1E-44 346.6 25.3 199 226-447 15-230 (256)
9 1b0u_A Histidine permease; ABC 100.0 1.4E-39 4.9E-44 346.4 26.2 188 226-436 6-211 (262)
10 1g6h_A High-affinity branched- 100.0 9.9E-40 3.4E-44 346.8 22.9 202 226-447 7-237 (257)
11 2yyz_A Sugar ABC transporter, 100.0 1.6E-39 5.3E-44 359.5 24.6 200 227-449 4-220 (359)
12 1g29_1 MALK, maltose transport 100.0 2.9E-39 1E-43 359.4 25.8 201 226-449 3-226 (372)
13 2it1_A 362AA long hypothetical 100.0 2E-39 6.8E-44 359.0 24.2 200 227-449 4-220 (362)
14 1z47_A CYSA, putative ABC-tran 100.0 2.7E-39 9.3E-44 356.7 24.7 203 224-449 12-232 (355)
15 4g1u_C Hemin import ATP-bindin 100.0 1.9E-39 6.4E-44 346.1 22.5 198 226-449 11-234 (266)
16 1ji0_A ABC transporter; ATP bi 100.0 4.4E-39 1.5E-43 338.5 24.7 187 226-436 6-197 (240)
17 1oxx_K GLCV, glucose, ABC tran 100.0 1.9E-39 6.7E-44 358.7 21.9 200 227-449 4-227 (353)
18 1v43_A Sugar-binding transport 100.0 3.1E-39 1.1E-43 358.7 23.3 201 226-449 11-228 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 8.3E-39 2.8E-43 352.5 21.4 196 227-449 2-214 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 2.5E-38 8.4E-43 332.5 23.0 182 227-436 2-185 (240)
21 1sgw_A Putative ABC transporte 100.0 1.3E-38 4.5E-43 328.8 19.8 184 225-437 9-192 (214)
22 2ihy_A ABC transporter, ATP-bi 100.0 2.2E-38 7.6E-43 340.0 21.7 203 226-448 21-248 (279)
23 2yz2_A Putative ABC transporte 100.0 4.1E-38 1.4E-42 336.0 23.6 202 227-447 3-222 (266)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 5.1E-38 1.8E-42 332.3 22.2 192 226-437 3-202 (250)
25 2zu0_C Probable ATP-dependent 100.0 2.3E-37 7.8E-42 330.4 25.6 205 226-447 20-249 (267)
26 2nq2_C Hypothetical ABC transp 100.0 5.8E-37 2E-41 324.7 26.0 193 226-448 4-213 (253)
27 2ff7_A Alpha-hemolysin translo 100.0 4.4E-37 1.5E-41 324.5 22.6 187 225-436 6-202 (247)
28 2ixe_A Antigen peptide transpo 100.0 1.8E-37 6.1E-42 331.8 18.8 189 226-436 16-215 (271)
29 3nh6_A ATP-binding cassette SU 100.0 2.4E-37 8.3E-42 335.4 19.4 198 224-447 51-272 (306)
30 2qi9_C Vitamin B12 import ATP- 100.0 1.9E-36 6.6E-41 319.7 22.0 190 226-448 4-218 (249)
31 1mv5_A LMRA, multidrug resista 100.0 1.4E-36 4.7E-41 320.0 15.5 186 227-437 2-197 (243)
32 2ghi_A Transport protein; mult 100.0 8E-36 2.7E-40 317.2 20.6 187 226-437 17-213 (260)
33 2pjz_A Hypothetical protein ST 100.0 2E-35 6.8E-40 314.3 19.9 180 227-436 2-183 (263)
34 2yl4_A ATP-binding cassette SU 100.0 7E-35 2.4E-39 344.8 22.4 203 225-448 339-566 (595)
35 2pze_A Cystic fibrosis transme 100.0 9.6E-35 3.3E-39 303.3 19.7 175 226-436 6-188 (229)
36 3gd7_A Fusion complex of cysti 100.0 1.3E-35 4.6E-40 331.4 14.1 198 225-449 18-239 (390)
37 4a82_A Cystic fibrosis transme 100.0 4.8E-35 1.7E-39 344.9 19.1 200 224-448 337-560 (578)
38 3b60_A Lipid A export ATP-bind 100.0 1.4E-34 4.9E-39 341.3 22.1 199 225-447 340-562 (582)
39 3qf4_A ABC transporter, ATP-bi 100.0 2.8E-35 9.4E-40 347.4 15.6 201 224-449 339-563 (587)
40 3b5x_A Lipid A export ATP-bind 100.0 1.4E-34 4.9E-39 341.3 20.9 189 225-437 340-538 (582)
41 2cbz_A Multidrug resistance-as 100.0 1.7E-34 6E-39 302.8 18.5 176 226-437 3-188 (237)
42 3qf4_B Uncharacterized ABC tra 100.0 1.2E-34 4.3E-39 342.6 14.4 188 224-437 352-549 (598)
43 4f4c_A Multidrug resistance pr 100.0 5.8E-34 2E-38 362.9 17.4 203 224-448 1074-1300(1321)
44 4f4c_A Multidrug resistance pr 100.0 5.1E-33 1.7E-37 354.3 20.3 202 224-449 413-638 (1321)
45 2bbs_A Cystic fibrosis transme 100.0 1.6E-32 5.4E-37 295.9 16.1 181 226-447 40-242 (290)
46 3g5u_A MCG1178, multidrug resi 100.0 5.2E-32 1.8E-36 344.2 18.5 201 224-448 385-609 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 3E-31 1E-35 337.2 18.9 201 225-447 1029-1253(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 2E-29 6.8E-34 297.1 17.9 174 225-436 356-530 (607)
49 3ozx_A RNAse L inhibitor; ATP 100.0 2.6E-29 9.1E-34 292.4 18.1 177 225-437 268-445 (538)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 3.1E-29 1.1E-33 292.3 17.1 173 225-435 286-459 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 2.3E-29 7.8E-34 296.6 7.8 165 253-437 106-287 (607)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 3.9E-29 1.3E-33 291.5 8.5 176 230-437 25-217 (538)
53 3ux8_A Excinuclease ABC, A sub 99.9 1.9E-28 6.6E-33 293.6 12.7 191 252-449 31-295 (670)
54 2iw3_A Elongation factor 3A; a 99.9 2E-27 6.9E-32 289.4 21.6 179 225-448 434-631 (986)
55 3j16_B RLI1P; ribosome recycli 99.9 1E-27 3.4E-32 282.2 17.2 174 252-449 360-556 (608)
56 2iw3_A Elongation factor 3A; a 99.9 6.8E-27 2.3E-31 284.7 14.5 183 226-437 671-957 (986)
57 3ux8_A Excinuclease ABC, A sub 99.9 2.8E-26 9.7E-31 274.8 15.8 171 252-436 335-604 (670)
58 3ozx_A RNAse L inhibitor; ATP 99.9 2.3E-26 7.7E-31 267.7 8.1 155 262-437 22-196 (538)
59 3j16_B RLI1P; ribosome recycli 99.9 3.7E-26 1.3E-30 268.9 8.1 167 253-437 92-280 (608)
60 2r6f_A Excinuclease ABC subuni 99.9 3.5E-24 1.2E-28 259.0 16.1 170 254-437 639-907 (972)
61 2vf7_A UVRA2, excinuclease ABC 99.9 7E-24 2.4E-28 256.2 18.3 169 254-436 512-791 (842)
62 3pih_A Uvrabc system protein A 99.9 1.2E-23 4.2E-28 256.0 20.2 183 253-448 598-898 (916)
63 2ygr_A Uvrabc system protein A 99.9 1.1E-23 3.8E-28 255.5 16.2 168 254-435 657-923 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 99.9 5.5E-25 1.9E-29 251.3 -6.7 157 256-437 129-297 (460)
65 4aby_A DNA repair protein RECN 99.9 2.7E-22 9.3E-27 226.5 13.1 182 253-437 49-355 (415)
66 3b85_A Phosphate starvation-in 99.9 8.8E-25 3E-29 224.5 -7.4 145 249-438 10-158 (208)
67 4gp7_A Metallophosphoesterase; 99.9 8.7E-23 3E-27 203.0 3.4 141 257-437 1-158 (171)
68 1tq4_A IIGP1, interferon-induc 99.8 1.5E-22 5E-27 227.6 -6.8 146 252-425 36-213 (413)
69 1e69_A Chromosome segregation 99.8 2.9E-20 1E-24 203.4 9.5 60 377-437 218-281 (322)
70 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 5.3E-19 1.8E-23 196.7 17.8 62 376-437 277-344 (365)
71 3sop_A Neuronal-specific septi 99.8 1E-21 3.5E-26 209.6 -3.9 146 267-437 4-149 (270)
72 1ye8_A Protein THEP1, hypothet 99.8 9.5E-21 3.2E-25 189.8 1.1 130 267-436 2-138 (178)
73 3b9q_A Chloroplast SRP recepto 99.8 9.8E-21 3.3E-25 205.2 -2.7 156 255-439 90-258 (302)
74 1znw_A Guanylate kinase, GMP k 99.8 1.5E-21 5.3E-26 199.7 -9.5 167 250-437 7-187 (207)
75 1z6g_A Guanylate kinase; struc 99.8 5.6E-22 1.9E-26 205.0 -14.2 152 252-425 10-174 (218)
76 2og2_A Putative signal recogni 99.7 6E-20 2E-24 203.0 -1.4 155 256-439 148-315 (359)
77 2v9p_A Replication protein E1; 99.7 2.3E-22 7.9E-27 217.4 -22.0 165 226-461 101-271 (305)
78 3aez_A Pantothenate kinase; tr 99.7 1.8E-19 6E-24 196.2 -5.2 123 262-411 87-209 (312)
79 3qkt_A DNA double-strand break 99.7 3.2E-16 1.1E-20 172.6 14.6 62 376-437 246-313 (339)
80 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.9E-17 6.5E-22 181.6 3.9 115 254-438 160-275 (330)
81 2jeo_A Uridine-cytidine kinase 99.7 3.5E-18 1.2E-22 179.4 -2.5 154 250-436 10-163 (245)
82 2vf7_A UVRA2, excinuclease ABC 99.6 1.3E-15 4.6E-20 184.1 18.7 88 357-449 362-472 (842)
83 2o5v_A DNA replication and rep 99.6 7.7E-16 2.6E-20 170.3 11.8 56 378-436 265-329 (359)
84 2dpy_A FLII, flagellum-specifi 99.6 2.9E-17 1E-21 186.5 -1.4 141 251-426 144-296 (438)
85 1cr0_A DNA primase/helicase; R 99.6 7.2E-17 2.5E-21 173.9 1.4 165 252-437 22-196 (296)
86 3asz_A Uridine kinase; cytidin 99.6 1.9E-17 6.4E-22 169.2 -6.0 143 262-436 3-159 (211)
87 1rj9_A FTSY, signal recognitio 99.6 2.4E-16 8.3E-21 170.8 0.3 149 264-439 101-259 (304)
88 2qnr_A Septin-2, protein NEDD5 99.6 3.3E-17 1.1E-21 177.5 -6.7 144 250-426 9-154 (301)
89 2o8b_B DNA mismatch repair pro 99.6 5.7E-16 1.9E-20 191.8 2.9 147 226-437 750-911 (1022)
90 3thx_B DNA mismatch repair pro 99.6 1.9E-15 6.4E-20 184.6 6.9 135 251-437 659-795 (918)
91 4ad8_A DNA repair protein RECN 99.5 2.7E-15 9.3E-20 174.4 7.0 61 376-437 394-457 (517)
92 1ewq_A DNA mismatch repair pro 99.5 2.1E-15 7.2E-20 181.5 5.7 127 251-437 565-697 (765)
93 1tf7_A KAIC; homohexamer, hexa 99.5 3E-15 1E-19 174.4 6.5 138 259-438 275-417 (525)
94 1tf7_A KAIC; homohexamer, hexa 99.5 2.3E-17 7.8E-22 192.2 -12.0 152 251-438 24-185 (525)
95 3thx_A DNA mismatch repair pro 99.5 3.2E-15 1.1E-19 183.0 6.2 126 250-437 647-784 (934)
96 1pui_A ENGB, probable GTP-bind 99.5 2.4E-16 8.3E-21 160.0 -3.3 178 227-430 4-202 (210)
97 2eyu_A Twitching motility prot 99.5 4.3E-15 1.5E-19 157.6 5.8 118 253-437 15-132 (261)
98 3pih_A Uvrabc system protein A 99.5 2.4E-15 8.3E-20 183.3 4.3 134 295-449 396-557 (916)
99 2ehv_A Hypothetical protein PH 99.5 6.8E-16 2.3E-20 161.0 -1.5 148 260-437 25-181 (251)
100 4a74_A DNA repair and recombin 99.5 2.4E-15 8.3E-20 154.7 1.2 133 260-436 20-178 (231)
101 2obl_A ESCN; ATPase, hydrolase 99.5 2.2E-15 7.4E-20 166.2 0.3 158 226-429 45-214 (347)
102 2qag_C Septin-7; cell cycle, c 99.5 8.2E-16 2.8E-20 173.3 -4.7 160 226-437 11-176 (418)
103 1nlf_A Regulatory protein REPA 99.5 6.9E-14 2.4E-18 149.4 10.2 150 261-438 26-181 (279)
104 3szr_A Interferon-induced GTP- 99.5 6.1E-16 2.1E-20 182.9 -6.8 128 268-431 48-187 (608)
105 2r6f_A Excinuclease ABC subuni 99.5 1.3E-13 4.4E-18 167.3 12.9 119 325-449 450-597 (972)
106 1pzn_A RAD51, DNA repair and r 99.5 4.3E-15 1.5E-19 164.2 -0.9 142 253-437 118-285 (349)
107 1wb9_A DNA mismatch repair pro 99.4 3.4E-14 1.2E-18 172.0 5.5 134 251-437 594-729 (800)
108 1w1w_A Structural maintenance 99.4 1.9E-13 6.5E-18 155.2 10.6 60 378-437 333-396 (430)
109 1f2t_B RAD50 ABC-ATPase; DNA d 99.4 1.3E-13 4.4E-18 133.7 7.2 62 376-437 55-122 (148)
110 2ygr_A Uvrabc system protein A 99.4 2.4E-13 8.1E-18 165.5 9.4 120 324-449 466-614 (993)
111 2i3b_A HCR-ntpase, human cance 99.4 2.4E-15 8.2E-20 151.9 -7.5 133 265-433 1-140 (189)
112 2qag_B Septin-6, protein NEDD5 99.4 2.5E-14 8.4E-19 160.8 -1.6 168 251-435 27-216 (427)
113 2bbw_A Adenylate kinase 4, AK4 99.4 4.4E-15 1.5E-19 155.7 -7.8 147 264-427 26-199 (246)
114 3jvv_A Twitching mobility prot 99.4 4.7E-13 1.6E-17 148.0 7.1 118 254-438 114-231 (356)
115 1zp6_A Hypothetical protein AT 99.4 7.1E-15 2.4E-19 147.3 -7.0 143 261-425 5-148 (191)
116 1s96_A Guanylate kinase, GMP k 99.3 8.9E-14 3E-18 143.7 -2.3 125 259-436 10-138 (219)
117 2rcn_A Probable GTPase ENGC; Y 99.3 9E-13 3.1E-17 145.3 5.2 121 255-393 206-328 (358)
118 2f1r_A Molybdopterin-guanine d 99.3 2.6E-14 8.9E-19 142.0 -7.3 138 266-428 3-163 (171)
119 2w0m_A SSO2452; RECA, SSPF, un 99.3 4E-13 1.4E-17 138.0 0.8 150 252-437 9-167 (235)
120 1nij_A Hypothetical protein YJ 99.3 5.1E-15 1.7E-19 161.5 -15.2 153 266-436 5-187 (318)
121 1lw7_A Transcriptional regulat 99.2 3E-14 1E-18 158.3 -11.2 147 254-435 157-326 (365)
122 1htw_A HI0065; nucleotide-bind 99.2 2.2E-13 7.6E-18 133.5 -4.0 80 250-335 18-97 (158)
123 2yhs_A FTSY, cell division pro 99.2 8.6E-13 2.9E-17 150.2 -0.8 156 255-439 283-450 (503)
124 2qm8_A GTPase/ATPase; G protei 99.2 9E-14 3.1E-18 152.9 -10.0 164 252-426 42-260 (337)
125 2cvh_A DNA repair and recombin 99.2 5.1E-12 1.7E-16 128.9 3.4 136 253-437 7-155 (220)
126 1odf_A YGR205W, hypothetical 3 99.2 7E-13 2.4E-17 142.7 -3.6 130 263-413 29-169 (290)
127 3kta_B Chromosome segregation 99.1 3.8E-11 1.3E-15 119.3 7.1 60 377-437 63-126 (173)
128 2yv5_A YJEQ protein; hydrolase 99.1 3.3E-12 1.1E-16 138.3 -0.8 122 262-392 162-301 (302)
129 1udx_A The GTP-binding protein 99.1 2.3E-12 7.7E-17 145.2 -2.2 160 255-439 147-309 (416)
130 2gza_A Type IV secretion syste 99.1 1.7E-11 5.9E-16 135.9 4.7 121 254-437 164-286 (361)
131 2ewv_A Twitching motility prot 99.1 1.9E-11 6.5E-16 136.1 4.8 117 254-437 127-243 (372)
132 3e70_C DPA, signal recognition 99.1 3.3E-12 1.1E-16 139.6 -1.6 145 262-439 126-280 (328)
133 3c8u_A Fructokinase; YP_612366 99.1 5.3E-13 1.8E-17 136.2 -8.7 142 262-428 19-173 (208)
134 1p9r_A General secretion pathw 99.1 2.8E-13 9.4E-18 152.8 -13.8 135 250-401 154-314 (418)
135 1n0w_A DNA repair protein RAD5 99.1 6.2E-11 2.1E-15 122.7 5.0 129 260-436 19-172 (243)
136 2kjq_A DNAA-related protein; s 99.0 1.2E-10 4.1E-15 112.8 4.8 41 394-435 81-122 (149)
137 2bdt_A BH3686; alpha-beta prot 99.0 5.1E-13 1.8E-17 133.8 -13.4 143 265-434 2-152 (189)
138 3ec2_A DNA replication protein 98.9 4.4E-10 1.5E-14 111.5 4.9 44 394-437 98-142 (180)
139 2x8a_A Nuclear valosin-contain 98.9 1.1E-12 3.7E-17 140.1 -15.7 128 251-406 32-163 (274)
140 1t9h_A YLOQ, probable GTPase E 98.9 2.3E-10 7.8E-15 123.7 1.2 119 260-386 168-303 (307)
141 1in4_A RUVB, holliday junction 98.9 1.5E-11 5E-16 134.9 -9.0 153 250-426 29-194 (334)
142 1lvg_A Guanylate kinase, GMP k 98.9 2.5E-12 8.6E-17 130.5 -14.4 37 389-425 116-153 (198)
143 2oap_1 GSPE-2, type II secreti 98.9 5E-12 1.7E-16 146.1 -14.0 83 252-336 247-329 (511)
144 3lda_A DNA repair protein RAD5 98.9 1.3E-09 4.3E-14 122.3 5.5 136 254-437 166-327 (400)
145 1u0l_A Probable GTPase ENGC; p 98.8 1.5E-09 5.1E-14 117.3 5.2 102 261-371 165-289 (301)
146 1sxj_E Activator 1 40 kDa subu 98.8 2.6E-09 9.1E-14 117.1 6.9 133 268-437 39-173 (354)
147 1sq5_A Pantothenate kinase; P- 98.8 2.9E-11 1E-15 131.1 -8.6 96 226-340 37-156 (308)
148 3auy_A DNA double-strand break 98.8 5.6E-09 1.9E-13 116.1 8.6 60 377-437 279-345 (371)
149 1vma_A Cell division protein F 98.7 4.5E-09 1.5E-13 113.7 2.6 113 258-425 97-212 (306)
150 3tr0_A Guanylate kinase, GMP k 98.6 2.4E-09 8.3E-14 107.9 -1.6 71 259-335 1-74 (205)
151 1ls1_A Signal recognition part 98.6 3.6E-08 1.2E-12 106.2 7.4 118 256-424 91-209 (295)
152 1iy2_A ATP-dependent metallopr 98.6 3E-11 1E-15 128.7 -16.7 124 252-399 62-190 (278)
153 3lnc_A Guanylate kinase, GMP k 98.6 9.8E-11 3.4E-15 121.2 -12.9 39 252-290 14-53 (231)
154 1ixz_A ATP-dependent metallopr 98.6 4.2E-11 1.4E-15 125.7 -16.5 128 252-405 38-170 (254)
155 3k1j_A LON protease, ATP-depen 98.6 6.4E-10 2.2E-14 131.5 -8.3 161 250-423 45-227 (604)
156 1oix_A RAS-related protein RAB 98.6 4.7E-09 1.6E-13 105.1 -0.9 38 385-424 152-189 (191)
157 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 9.9E-10 3.4E-14 122.6 -7.6 140 261-431 16-177 (392)
158 3euj_A Chromosome partition pr 98.5 2.3E-08 7.9E-13 114.1 2.7 52 252-306 17-68 (483)
159 2dr3_A UPF0273 protein PH0284; 98.5 7.2E-09 2.5E-13 107.2 -2.7 43 395-437 127-172 (247)
160 1svm_A Large T antigen; AAA+ f 98.4 6.5E-10 2.2E-14 123.6 -13.8 144 252-407 156-312 (377)
161 2f9l_A RAB11B, member RAS onco 98.4 2.1E-07 7.2E-12 93.3 4.4 37 387-425 130-166 (199)
162 2zr9_A Protein RECA, recombina 98.3 4.6E-07 1.6E-11 99.8 7.4 28 260-287 56-83 (349)
163 2r6a_A DNAB helicase, replicat 98.3 9.7E-07 3.3E-11 100.7 8.1 160 252-436 190-362 (454)
164 2qtf_A Protein HFLX, GTP-bindi 98.3 6E-07 2.1E-11 99.4 5.8 151 264-426 177-353 (364)
165 2ius_A DNA translocase FTSK; n 98.2 2E-08 6.8E-13 115.5 -7.4 160 257-437 159-341 (512)
166 4eun_A Thermoresistant glucoki 98.2 6.6E-08 2.3E-12 97.6 -2.9 59 259-323 23-83 (200)
167 2px0_A Flagellar biosynthesis 98.2 3.2E-06 1.1E-10 90.9 9.1 103 263-421 103-205 (296)
168 1qhl_A Protein (cell division 98.2 4.4E-08 1.5E-12 101.4 -5.4 59 259-320 22-91 (227)
169 4a1f_A DNAB helicase, replicat 98.0 4E-06 1.4E-10 91.7 6.6 128 252-434 33-162 (338)
170 3nwj_A ATSK2; P loop, shikimat 98.0 2.7E-07 9.2E-12 96.9 -2.6 52 226-289 17-72 (250)
171 2j41_A Guanylate kinase; GMP, 98.0 3.1E-06 1E-10 85.0 3.6 30 261-290 2-31 (207)
172 2e87_A Hypothetical protein PH 98.0 1.2E-05 4.1E-10 88.6 8.6 58 377-436 230-288 (357)
173 2dhr_A FTSH; AAA+ protein, hex 97.9 6E-08 2.1E-12 111.6 -11.3 129 253-407 54-187 (499)
174 3hr8_A Protein RECA; alpha and 97.9 4.8E-06 1.6E-10 91.7 3.5 35 254-288 48-84 (356)
175 3vaa_A Shikimate kinase, SK; s 97.9 5.3E-06 1.8E-10 83.4 3.1 40 250-289 10-49 (199)
176 3cr8_A Sulfate adenylyltranfer 97.8 6.1E-07 2.1E-11 104.4 -4.6 43 261-305 365-409 (552)
177 3t34_A Dynamin-related protein 97.8 1.7E-06 5.9E-11 95.5 -1.8 34 252-288 24-57 (360)
178 3kta_A Chromosome segregation 97.8 9.2E-06 3.1E-10 80.1 3.6 32 256-288 18-49 (182)
179 2ce7_A Cell division protein F 97.8 1.6E-05 5.6E-10 90.8 5.5 45 381-425 93-147 (476)
180 2dy1_A Elongation factor G; tr 97.8 8E-06 2.7E-10 97.5 3.0 30 259-288 3-32 (665)
181 4e22_A Cytidylate kinase; P-lo 97.7 3.6E-06 1.2E-10 88.2 -0.9 57 263-321 25-96 (252)
182 1zu4_A FTSY; GTPase, signal re 97.7 4.6E-06 1.6E-10 90.7 -0.1 79 254-334 94-185 (320)
183 3uie_A Adenylyl-sulfate kinase 97.7 4.2E-06 1.4E-10 84.3 -0.5 51 252-305 12-64 (200)
184 3a00_A Guanylate kinase, GMP k 97.7 1.1E-05 3.8E-10 80.2 2.4 26 265-290 1-26 (186)
185 1kgd_A CASK, peripheral plasma 97.7 1.5E-05 5.1E-10 78.9 3.1 38 263-301 3-40 (180)
186 2vp4_A Deoxynucleoside kinase; 97.7 1.1E-05 3.9E-10 83.1 1.9 40 260-305 15-54 (230)
187 3bh0_A DNAB-like replicative h 97.5 5.3E-05 1.8E-09 82.1 5.3 130 252-434 55-187 (315)
188 2xau_A PRE-mRNA-splicing facto 97.5 4.5E-05 1.5E-09 92.5 5.0 48 378-425 190-238 (773)
189 3tau_A Guanylate kinase, GMP k 97.5 4.2E-05 1.4E-09 77.5 3.6 28 263-290 6-33 (208)
190 2qt1_A Nicotinamide riboside k 97.5 6E-05 2E-09 75.9 4.7 29 261-289 17-45 (207)
191 1fnn_A CDC6P, cell division co 97.3 0.0004 1.4E-08 76.2 8.5 40 395-435 124-166 (389)
192 1knq_A Gluconate kinase; ALFA/ 97.3 9.9E-05 3.4E-09 72.1 3.1 36 263-304 6-41 (175)
193 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00013 4.5E-09 70.1 3.8 29 257-286 16-44 (149)
194 3ney_A 55 kDa erythrocyte memb 97.2 0.00012 3.9E-09 74.0 2.9 28 262-289 16-43 (197)
195 1kag_A SKI, shikimate kinase I 97.2 0.00011 3.9E-09 71.3 2.5 26 264-289 3-28 (173)
196 1v5w_A DMC1, meiotic recombina 97.1 0.0023 8E-08 69.9 11.7 33 255-287 111-144 (343)
197 1rz3_A Hypothetical protein rb 97.1 0.00022 7.6E-09 71.7 3.1 28 262-289 19-46 (201)
198 2z43_A DNA repair and recombin 97.0 0.0026 9E-08 68.9 11.4 34 254-287 95-129 (324)
199 3tqc_A Pantothenate kinase; bi 97.0 4.7E-05 1.6E-09 82.7 -2.6 39 251-289 72-116 (321)
200 3ice_A Transcription terminati 97.0 8.6E-05 3E-09 81.8 -1.0 51 226-288 133-197 (422)
201 3b9p_A CG5977-PA, isoform A; A 97.0 0.002 6.7E-08 68.4 9.5 26 264-289 53-78 (297)
202 2gj8_A MNME, tRNA modification 96.9 0.00099 3.4E-08 64.8 6.3 26 263-288 2-27 (172)
203 3kl4_A SRP54, signal recogniti 96.9 0.0014 4.7E-08 73.9 7.7 25 264-288 96-120 (433)
204 1m2o_B GTP-binding protein SAR 96.8 0.001 3.4E-08 65.8 5.4 35 253-288 12-46 (190)
205 3qks_A DNA double-strand break 96.8 0.0006 2.1E-08 68.9 3.8 28 258-286 17-44 (203)
206 4eaq_A DTMP kinase, thymidylat 96.8 0.00055 1.9E-08 70.6 3.4 36 254-289 12-50 (229)
207 1mky_A Probable GTP-binding pr 96.8 0.0011 3.7E-08 75.0 5.9 40 266-305 181-230 (439)
208 2z4s_A Chromosomal replication 96.7 0.00084 2.9E-08 76.0 4.7 42 395-436 193-235 (440)
209 2pez_A Bifunctional 3'-phospho 96.7 0.00071 2.4E-08 66.3 3.3 27 263-289 3-29 (179)
210 1cke_A CK, MSSA, protein (cyti 96.7 0.00068 2.3E-08 68.8 3.1 57 265-321 5-74 (227)
211 2q6t_A DNAB replication FORK h 96.6 0.0031 1.1E-07 71.4 8.4 128 252-433 187-315 (444)
212 2qor_A Guanylate kinase; phosp 96.6 0.0008 2.7E-08 67.6 2.9 29 261-289 8-36 (204)
213 2p67_A LAO/AO transport system 96.6 0.00025 8.4E-09 77.6 -1.0 37 252-288 43-79 (341)
214 1y63_A LMAJ004144AAA protein; 96.6 0.00098 3.3E-08 65.8 3.1 32 257-288 2-33 (184)
215 1f6b_A SAR1; gtpases, N-termin 96.5 0.00041 1.4E-08 69.2 0.2 36 252-288 13-48 (198)
216 3m6a_A ATP-dependent protease 96.5 0.00036 1.2E-08 81.2 -0.4 49 252-303 96-144 (543)
217 1jjv_A Dephospho-COA kinase; P 96.5 0.0012 4E-08 66.2 3.4 21 267-287 4-24 (206)
218 2qag_A Septin-2, protein NEDD5 96.4 0.00012 4E-09 80.9 -5.2 44 226-288 17-60 (361)
219 3llm_A ATP-dependent RNA helic 96.3 0.0036 1.2E-07 64.2 5.9 25 263-287 74-98 (235)
220 2www_A Methylmalonic aciduria 96.3 0.0016 5.6E-08 71.3 3.3 26 263-288 72-97 (349)
221 3auy_A DNA double-strand break 96.3 0.0021 7.2E-08 71.0 4.1 31 255-286 16-46 (371)
222 2if2_A Dephospho-COA kinase; a 96.3 0.0015 5.3E-08 65.1 2.7 21 267-287 3-23 (204)
223 2wjg_A FEOB, ferrous iron tran 96.2 0.0048 1.6E-07 60.1 5.9 22 267-288 9-30 (188)
224 1np6_A Molybdopterin-guanine d 96.2 0.0022 7.7E-08 63.2 3.1 38 266-303 7-45 (174)
225 1ega_A Protein (GTP-binding pr 96.1 0.0019 6.5E-08 69.2 2.6 42 379-427 101-145 (301)
226 2yvu_A Probable adenylyl-sulfa 96.1 0.0026 9E-08 62.6 3.2 27 263-289 11-37 (186)
227 2wji_A Ferrous iron transport 96.1 0.0029 9.8E-08 60.8 3.4 23 267-289 5-27 (165)
228 1m7g_A Adenylylsulfate kinase; 96.0 0.0025 8.5E-08 64.3 2.8 28 262-289 22-49 (211)
229 3cm0_A Adenylate kinase; ATP-b 96.0 0.0031 1.1E-07 61.8 3.3 25 263-287 2-26 (186)
230 3t61_A Gluconokinase; PSI-biol 96.0 0.0025 8.6E-08 63.6 2.5 25 265-289 18-42 (202)
231 2ga8_A Hypothetical 39.9 kDa p 96.0 0.00074 2.5E-08 73.9 -1.6 36 253-288 10-47 (359)
232 1u94_A RECA protein, recombina 95.9 0.011 3.7E-07 65.0 7.4 34 254-287 50-85 (356)
233 1qhx_A CPT, protein (chloramph 95.9 0.004 1.4E-07 60.5 3.5 26 265-290 3-28 (178)
234 3kb2_A SPBC2 prophage-derived 95.9 0.0039 1.3E-07 59.9 3.2 22 267-288 3-24 (173)
235 2zej_A Dardarin, leucine-rich 95.8 0.0044 1.5E-07 60.6 3.1 22 267-288 4-25 (184)
236 1sxj_C Activator 1 40 kDa subu 95.8 0.00088 3E-08 72.9 -2.2 38 251-288 30-69 (340)
237 1q3t_A Cytidylate kinase; nucl 95.7 0.0044 1.5E-07 63.6 3.1 28 261-288 12-39 (236)
238 2rhm_A Putative kinase; P-loop 95.6 0.0055 1.9E-07 60.2 3.2 26 263-288 3-28 (193)
239 1kht_A Adenylate kinase; phosp 95.6 0.0059 2E-07 59.7 3.4 24 265-288 3-26 (192)
240 3r20_A Cytidylate kinase; stru 95.6 0.0056 1.9E-07 63.2 3.3 23 266-288 10-32 (233)
241 1lv7_A FTSH; alpha/beta domain 95.6 0.004 1.4E-07 64.6 2.1 32 256-289 38-69 (257)
242 2ohf_A Protein OLA1, GTP-bindi 95.5 0.0048 1.6E-07 68.6 2.7 29 260-288 17-45 (396)
243 2ze6_A Isopentenyl transferase 95.4 0.0065 2.2E-07 63.3 3.1 24 266-289 2-25 (253)
244 3bgw_A DNAB-like replicative h 95.4 0.007 2.4E-07 68.5 3.5 35 253-287 185-219 (444)
245 2p5t_B PEZT; postsegregational 95.4 0.0029 9.9E-08 65.9 0.3 30 261-290 28-57 (253)
246 3trf_A Shikimate kinase, SK; a 95.4 0.008 2.7E-07 58.8 3.4 25 264-288 4-28 (185)
247 1ex7_A Guanylate kinase; subst 95.4 0.0072 2.5E-07 60.2 3.0 23 267-289 3-25 (186)
248 3lw7_A Adenylate kinase relate 95.3 0.0083 2.8E-07 57.4 3.2 19 267-285 3-21 (179)
249 1vht_A Dephospho-COA kinase; s 95.3 0.0093 3.2E-07 60.2 3.6 24 264-287 3-26 (218)
250 2v54_A DTMP kinase, thymidylat 95.2 0.0098 3.3E-07 59.0 3.5 26 264-289 3-28 (204)
251 2plr_A DTMP kinase, probable t 95.2 0.011 3.6E-07 58.9 3.7 25 264-288 3-27 (213)
252 2jaq_A Deoxyguanosine kinase; 95.2 0.0094 3.2E-07 58.9 3.2 23 267-289 2-24 (205)
253 3iij_A Coilin-interacting nucl 95.2 0.0087 3E-07 58.4 2.9 25 264-288 10-34 (180)
254 3lxx_A GTPase IMAP family memb 95.1 0.0091 3.1E-07 61.2 3.1 23 267-289 31-53 (239)
255 2wwf_A Thymidilate kinase, put 95.1 0.01 3.6E-07 59.2 3.5 26 263-288 8-33 (212)
256 1ly1_A Polynucleotide kinase; 95.0 0.012 4E-07 57.0 3.4 22 266-287 3-24 (181)
257 2ffh_A Protein (FFH); SRP54, s 95.0 0.0084 2.9E-07 67.4 2.5 46 256-305 91-136 (425)
258 1gvn_B Zeta; postsegregational 95.0 0.011 3.7E-07 63.0 3.2 27 263-289 31-57 (287)
259 2c95_A Adenylate kinase 1; tra 95.0 0.011 3.8E-07 58.1 3.1 26 263-288 7-32 (196)
260 1j8m_F SRP54, signal recogniti 94.9 0.0054 1.8E-07 65.7 0.7 33 256-289 89-122 (297)
261 1gtv_A TMK, thymidylate kinase 94.9 0.0059 2E-07 61.1 1.0 23 267-289 2-24 (214)
262 1nn5_A Similar to deoxythymidy 94.9 0.012 4.2E-07 58.7 3.3 26 263-288 7-32 (215)
263 1via_A Shikimate kinase; struc 94.9 0.012 4E-07 57.2 3.0 22 267-288 6-27 (175)
264 3k53_A Ferrous iron transport 94.8 0.011 3.9E-07 61.9 2.9 23 267-289 5-27 (271)
265 1uf9_A TT1252 protein; P-loop, 94.8 0.014 4.8E-07 57.7 3.4 23 266-288 9-31 (203)
266 1nks_A Adenylate kinase; therm 94.8 0.014 4.7E-07 57.1 3.1 22 267-288 3-24 (194)
267 1xjc_A MOBB protein homolog; s 94.7 0.014 4.6E-07 57.3 2.9 22 267-288 6-27 (169)
268 1tev_A UMP-CMP kinase; ploop, 94.7 0.016 5.6E-07 56.6 3.5 23 265-287 3-25 (196)
269 1ko7_A HPR kinase/phosphatase; 94.7 0.026 9E-07 60.7 5.2 37 251-288 131-167 (314)
270 3q72_A GTP-binding protein RAD 94.6 0.016 5.3E-07 54.9 2.9 23 267-289 4-26 (166)
271 2bwj_A Adenylate kinase 5; pho 94.5 0.014 4.6E-07 57.6 2.4 26 263-288 10-35 (199)
272 1aky_A Adenylate kinase; ATP:A 94.5 0.019 6.4E-07 58.0 3.5 26 263-288 2-27 (220)
273 2nzj_A GTP-binding protein REM 94.5 0.018 6.3E-07 54.9 3.1 22 267-288 6-27 (175)
274 2ged_A SR-beta, signal recogni 94.5 0.016 5.4E-07 56.7 2.7 23 267-289 50-72 (193)
275 1moz_A ARL1, ADP-ribosylation 94.4 0.028 9.7E-07 54.1 4.5 22 266-287 19-40 (183)
276 2erx_A GTP-binding protein DI- 94.4 0.019 6.5E-07 54.4 3.1 22 267-288 5-26 (172)
277 3ihw_A Centg3; RAS, centaurin, 94.4 0.037 1.3E-06 54.1 5.3 21 267-287 22-42 (184)
278 1z2a_A RAS-related protein RAB 94.4 0.017 5.7E-07 54.7 2.7 22 267-288 7-28 (168)
279 1upt_A ARL1, ADP-ribosylation 94.3 0.045 1.5E-06 51.9 5.6 22 267-288 9-30 (171)
280 2z0h_A DTMP kinase, thymidylat 94.3 0.021 7.3E-07 56.1 3.3 22 267-288 2-23 (197)
281 3q85_A GTP-binding protein REM 94.3 0.021 7.3E-07 54.1 3.2 22 267-288 4-25 (169)
282 3tw8_B RAS-related protein RAB 94.3 0.02 6.9E-07 54.8 3.0 22 267-288 11-32 (181)
283 1ypw_A Transitional endoplasmi 94.3 0.011 3.7E-07 72.0 1.3 30 261-290 234-263 (806)
284 2dyk_A GTP-binding protein; GT 94.3 0.021 7E-07 53.7 3.0 23 267-289 3-25 (161)
285 2ce2_X GTPase HRAS; signaling 94.3 0.018 6.1E-07 54.0 2.5 22 267-288 5-26 (166)
286 1fzq_A ADP-ribosylation factor 94.3 0.02 6.7E-07 55.8 2.9 22 267-288 18-39 (181)
287 3ake_A Cytidylate kinase; CMP 94.2 0.02 6.8E-07 56.8 2.9 22 267-288 4-25 (208)
288 3cf0_A Transitional endoplasmi 94.2 0.018 6.3E-07 61.4 2.8 28 262-289 46-73 (301)
289 1kao_A RAP2A; GTP-binding prot 94.2 0.019 6.5E-07 54.0 2.7 22 267-288 5-26 (167)
290 1u8z_A RAS-related protein RAL 94.2 0.019 6.6E-07 54.0 2.7 22 267-288 6-27 (168)
291 1zd8_A GTP:AMP phosphotransfer 94.2 0.022 7.5E-07 57.9 3.2 26 263-288 5-30 (227)
292 2vli_A Antibiotic resistance p 94.2 0.016 5.5E-07 56.3 2.1 25 264-288 4-28 (183)
293 3b1v_A Ferrous iron uptake tra 94.2 0.023 7.9E-07 59.9 3.4 22 267-288 5-26 (272)
294 1z0j_A RAB-22, RAS-related pro 94.2 0.022 7.4E-07 54.0 2.9 23 267-289 8-30 (170)
295 1svi_A GTP-binding protein YSX 94.1 0.021 7.3E-07 55.7 2.9 23 267-289 25-47 (195)
296 3lxw_A GTPase IMAP family memb 94.1 0.024 8.3E-07 58.7 3.4 23 267-289 23-45 (247)
297 2lkc_A Translation initiation 94.1 0.028 9.5E-07 53.8 3.6 24 265-288 8-31 (178)
298 1ek0_A Protein (GTP-binding pr 94.1 0.021 7.3E-07 53.9 2.7 22 267-288 5-26 (170)
299 1g16_A RAS-related protein SEC 94.1 0.02 6.9E-07 54.2 2.5 23 267-289 5-27 (170)
300 1z08_A RAS-related protein RAB 94.1 0.021 7.3E-07 54.1 2.7 22 267-288 8-29 (170)
301 1c1y_A RAS-related protein RAP 94.1 0.022 7.5E-07 53.8 2.7 22 267-288 5-26 (167)
302 2cdn_A Adenylate kinase; phosp 94.1 0.027 9.3E-07 55.9 3.5 25 264-288 19-43 (201)
303 3pqc_A Probable GTP-binding pr 94.0 0.023 7.8E-07 55.2 2.9 23 267-289 25-47 (195)
304 3fb4_A Adenylate kinase; psych 94.0 0.026 8.9E-07 56.6 3.3 22 267-288 2-23 (216)
305 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.022 7.6E-07 54.4 2.7 22 267-288 9-30 (177)
306 1ky3_A GTP-binding protein YPT 94.0 0.023 7.8E-07 54.5 2.7 23 267-289 10-32 (182)
307 2pbr_A DTMP kinase, thymidylat 94.0 0.027 9.4E-07 55.0 3.3 22 267-288 2-23 (195)
308 2cxx_A Probable GTP-binding pr 94.0 0.025 8.4E-07 54.8 2.9 21 268-288 4-24 (190)
309 1ukz_A Uridylate kinase; trans 93.9 0.029 1E-06 55.6 3.5 24 265-288 15-38 (203)
310 1zak_A Adenylate kinase; ATP:A 93.9 0.024 8E-07 57.4 2.8 25 264-288 4-28 (222)
311 2fn4_A P23, RAS-related protei 93.9 0.023 7.8E-07 54.4 2.5 22 267-288 11-32 (181)
312 1jal_A YCHF protein; nucleotid 93.9 0.029 1E-06 61.6 3.6 24 265-288 2-25 (363)
313 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.031 1.1E-06 58.2 3.7 25 264-288 3-27 (260)
314 1e6c_A Shikimate kinase; phosp 93.9 0.025 8.6E-07 54.4 2.7 22 267-288 4-25 (173)
315 1zuh_A Shikimate kinase; alpha 93.8 0.031 1E-06 53.7 3.3 23 266-288 8-30 (168)
316 1r2q_A RAS-related protein RAB 93.8 0.026 8.9E-07 53.3 2.7 22 267-288 8-29 (170)
317 1qf9_A UMP/CMP kinase, protein 93.8 0.032 1.1E-06 54.4 3.4 24 265-288 6-29 (194)
318 2hxs_A RAB-26, RAS-related pro 93.8 0.029 1E-06 53.7 3.0 22 267-288 8-29 (178)
319 3dl0_A Adenylate kinase; phosp 93.8 0.031 1.1E-06 56.1 3.3 22 267-288 2-23 (216)
320 2pt5_A Shikimate kinase, SK; a 93.8 0.032 1.1E-06 53.4 3.2 22 267-288 2-23 (168)
321 2iyv_A Shikimate kinase, SK; t 93.8 0.026 8.8E-07 55.1 2.6 23 266-288 3-25 (184)
322 3clv_A RAB5 protein, putative; 93.7 0.027 9.1E-07 54.9 2.7 22 267-288 9-30 (208)
323 4dsu_A GTPase KRAS, isoform 2B 93.7 0.027 9.2E-07 54.4 2.7 22 267-288 6-27 (189)
324 2qmh_A HPR kinase/phosphorylas 93.7 0.051 1.8E-06 54.6 4.7 36 253-289 23-58 (205)
325 3t5d_A Septin-7; GTP-binding p 93.7 0.028 9.5E-07 59.0 2.9 22 267-288 10-31 (274)
326 3bc1_A RAS-related protein RAB 93.7 0.028 9.6E-07 54.4 2.7 22 267-288 13-34 (195)
327 2oil_A CATX-8, RAS-related pro 93.7 0.028 9.6E-07 54.9 2.7 22 267-288 27-48 (193)
328 1r8s_A ADP-ribosylation factor 93.7 0.029 9.8E-07 52.9 2.7 20 268-287 3-22 (164)
329 3tlx_A Adenylate kinase 2; str 93.6 0.036 1.2E-06 57.2 3.6 25 264-288 28-52 (243)
330 1wf3_A GTP-binding protein; GT 93.6 0.036 1.2E-06 59.3 3.6 25 263-288 6-30 (301)
331 2y8e_A RAB-protein 6, GH09086P 93.6 0.029 9.9E-07 53.6 2.5 22 267-288 16-37 (179)
332 3cbq_A GTP-binding protein REM 93.5 0.03 1E-06 55.3 2.7 21 267-287 25-45 (195)
333 2g6b_A RAS-related protein RAB 93.5 0.031 1.1E-06 53.6 2.7 22 267-288 12-33 (180)
334 2a9k_A RAS-related protein RAL 93.5 0.032 1.1E-06 53.7 2.7 22 267-288 20-41 (187)
335 1z0f_A RAB14, member RAS oncog 93.5 0.032 1.1E-06 53.2 2.7 23 267-289 17-39 (179)
336 3iby_A Ferrous iron transport 93.5 0.033 1.1E-06 58.1 3.0 23 267-289 3-25 (256)
337 3bos_A Putative DNA replicatio 93.4 0.04 1.4E-06 55.5 3.5 25 264-288 51-75 (242)
338 1ksh_A ARF-like protein 2; sma 93.4 0.038 1.3E-06 53.5 3.1 26 264-289 17-42 (186)
339 3con_A GTPase NRAS; structural 93.4 0.033 1.1E-06 54.2 2.7 22 267-288 23-44 (190)
340 3t1o_A Gliding protein MGLA; G 93.4 0.033 1.1E-06 54.1 2.7 24 267-290 16-39 (198)
341 3iev_A GTP-binding protein ERA 93.4 0.042 1.4E-06 58.9 3.6 23 267-289 12-34 (308)
342 2f7s_A C25KG, RAS-related prot 93.3 0.077 2.6E-06 52.8 5.4 23 267-289 27-49 (217)
343 2efe_B Small GTP-binding prote 93.3 0.034 1.2E-06 53.3 2.7 22 267-288 14-35 (181)
344 2grj_A Dephospho-COA kinase; T 93.3 0.042 1.4E-06 54.8 3.3 24 265-288 12-35 (192)
345 1uj2_A Uridine-cytidine kinase 93.3 0.041 1.4E-06 57.0 3.3 23 266-288 23-45 (252)
346 2bme_A RAB4A, RAS-related prot 93.3 0.034 1.2E-06 53.7 2.5 22 267-288 12-33 (186)
347 1nrj_B SR-beta, signal recogni 93.3 0.035 1.2E-06 55.4 2.7 23 267-289 14-36 (218)
348 2bov_A RAla, RAS-related prote 93.2 0.036 1.2E-06 54.5 2.7 22 267-288 16-37 (206)
349 2xtp_A GTPase IMAP family memb 93.2 0.038 1.3E-06 57.2 2.9 23 267-289 24-46 (260)
350 2gf9_A RAS-related protein RAB 93.2 0.037 1.3E-06 53.9 2.7 22 267-288 24-45 (189)
351 2il1_A RAB12; G-protein, GDP, 93.2 0.041 1.4E-06 53.9 3.0 22 267-288 28-49 (192)
352 1vg8_A RAS-related protein RAB 93.2 0.037 1.3E-06 54.5 2.7 23 267-289 10-32 (207)
353 2gf0_A GTP-binding protein DI- 93.1 0.036 1.2E-06 54.1 2.5 22 267-288 10-31 (199)
354 3tkl_A RAS-related protein RAB 93.1 0.039 1.3E-06 53.8 2.7 22 267-288 18-39 (196)
355 1m7b_A RND3/RHOE small GTP-bin 93.1 0.037 1.3E-06 53.7 2.5 22 267-288 9-30 (184)
356 1zbd_A Rabphilin-3A; G protein 93.1 0.045 1.5E-06 53.9 3.1 23 267-289 10-32 (203)
357 2h57_A ADP-ribosylation factor 93.1 0.038 1.3E-06 53.9 2.5 23 267-289 23-45 (190)
358 1jwy_B Dynamin A GTPase domain 93.1 0.042 1.4E-06 58.5 3.1 23 267-289 26-48 (315)
359 2dby_A GTP-binding protein; GD 93.1 0.036 1.2E-06 61.1 2.6 21 268-288 4-24 (368)
360 2fg5_A RAB-22B, RAS-related pr 93.1 0.038 1.3E-06 54.1 2.5 23 267-289 25-47 (192)
361 3kkq_A RAS-related protein M-R 93.0 0.041 1.4E-06 53.1 2.7 22 267-288 20-41 (183)
362 2qby_A CDC6 homolog 1, cell di 93.0 0.034 1.2E-06 60.3 2.4 26 263-288 43-68 (386)
363 3v9p_A DTMP kinase, thymidylat 93.0 0.039 1.3E-06 56.6 2.6 27 262-288 22-48 (227)
364 3a1s_A Iron(II) transport prot 93.0 0.045 1.5E-06 57.1 3.1 23 267-289 7-29 (258)
365 1mh1_A RAC1; GTP-binding, GTPa 93.0 0.042 1.4E-06 52.9 2.7 22 267-288 7-28 (186)
366 2cjw_A GTP-binding protein GEM 93.0 0.041 1.4E-06 54.2 2.7 21 267-287 8-28 (192)
367 3be4_A Adenylate kinase; malar 93.0 0.045 1.5E-06 55.2 3.0 25 264-288 4-28 (217)
368 4dhe_A Probable GTP-binding pr 93.0 0.026 8.7E-07 56.6 1.1 23 267-289 31-53 (223)
369 2qu8_A Putative nucleolar GTP- 93.0 0.047 1.6E-06 55.2 3.1 23 267-289 31-53 (228)
370 3i8s_A Ferrous iron transport 92.9 0.044 1.5E-06 57.7 2.9 23 267-289 5-27 (274)
371 3bwd_D RAC-like GTP-binding pr 92.9 0.051 1.7E-06 52.1 3.2 23 267-289 10-32 (182)
372 1a7j_A Phosphoribulokinase; tr 92.9 0.026 9E-07 60.1 1.2 23 265-287 5-27 (290)
373 2xb4_A Adenylate kinase; ATP-b 92.9 0.05 1.7E-06 55.2 3.2 22 267-288 2-23 (223)
374 1jbk_A CLPB protein; beta barr 92.9 0.056 1.9E-06 51.9 3.4 25 264-288 42-66 (195)
375 1zj6_A ADP-ribosylation factor 92.9 0.048 1.6E-06 53.0 3.0 22 267-288 18-39 (187)
376 1z06_A RAS-related protein RAB 92.9 0.044 1.5E-06 53.4 2.7 22 267-288 22-43 (189)
377 4fcw_A Chaperone protein CLPB; 92.9 0.048 1.6E-06 57.7 3.2 25 264-288 46-70 (311)
378 1q57_A DNA primase/helicase; d 92.9 0.33 1.1E-05 55.5 10.4 35 253-287 230-264 (503)
379 4bas_A ADP-ribosylation factor 92.9 0.049 1.7E-06 53.2 3.0 22 267-288 19-40 (199)
380 2o52_A RAS-related protein RAB 92.9 0.048 1.6E-06 53.9 3.0 22 267-288 27-48 (200)
381 3oes_A GTPase rhebl1; small GT 92.9 0.042 1.4E-06 54.2 2.5 22 267-288 26-47 (201)
382 4edh_A DTMP kinase, thymidylat 92.9 0.059 2E-06 54.6 3.7 26 263-288 4-29 (213)
383 2wsm_A Hydrogenase expression/ 92.9 0.044 1.5E-06 54.9 2.7 22 267-288 32-53 (221)
384 2f6r_A COA synthase, bifunctio 92.8 0.047 1.6E-06 57.7 3.1 21 266-286 76-96 (281)
385 2h17_A ADP-ribosylation factor 92.8 0.045 1.5E-06 53.0 2.6 23 267-289 23-45 (181)
386 3t5g_A GTP-binding protein RHE 92.8 0.044 1.5E-06 52.7 2.5 21 267-287 8-28 (181)
387 2a5j_A RAS-related protein RAB 92.8 0.047 1.6E-06 53.3 2.7 22 267-288 23-44 (191)
388 3dz8_A RAS-related protein RAB 92.7 0.045 1.5E-06 53.5 2.5 23 267-289 25-47 (191)
389 2bcg_Y Protein YP2, GTP-bindin 92.7 0.045 1.5E-06 54.1 2.5 22 267-288 10-31 (206)
390 1zd9_A ADP-ribosylation factor 92.7 0.049 1.7E-06 53.1 2.7 22 267-288 24-45 (188)
391 1x3s_A RAS-related protein RAB 92.7 0.049 1.7E-06 52.9 2.7 22 267-288 17-38 (195)
392 2aka_B Dynamin-1; fusion prote 92.7 0.052 1.8E-06 57.1 3.1 23 267-289 28-50 (299)
393 3a8t_A Adenylate isopentenyltr 92.6 0.071 2.4E-06 57.9 4.1 26 264-289 39-64 (339)
394 1e4v_A Adenylate kinase; trans 92.6 0.056 1.9E-06 54.3 3.1 22 267-288 2-23 (214)
395 3reg_A RHO-like small GTPase; 92.6 0.05 1.7E-06 53.2 2.7 22 267-288 25-46 (194)
396 2atv_A RERG, RAS-like estrogen 92.6 0.05 1.7E-06 53.4 2.7 22 267-288 30-51 (196)
397 3cph_A RAS-related protein SEC 92.6 0.05 1.7E-06 53.8 2.7 22 267-288 22-43 (213)
398 2ew1_A RAS-related protein RAB 92.6 0.048 1.6E-06 54.3 2.5 22 267-288 28-49 (201)
399 1ltq_A Polynucleotide kinase; 92.6 0.06 2E-06 56.9 3.4 22 266-287 3-24 (301)
400 2p5s_A RAS and EF-hand domain 92.6 0.051 1.8E-06 53.5 2.7 23 267-289 30-52 (199)
401 3llu_A RAS-related GTP-binding 92.5 0.065 2.2E-06 52.7 3.4 23 267-289 22-44 (196)
402 2w58_A DNAI, primosome compone 92.5 0.069 2.4E-06 52.8 3.5 23 266-288 55-77 (202)
403 2q3h_A RAS homolog gene family 92.5 0.062 2.1E-06 52.8 3.2 22 267-288 22-43 (201)
404 1ak2_A Adenylate kinase isoenz 92.4 0.067 2.3E-06 54.5 3.5 25 264-288 15-39 (233)
405 2b6h_A ADP-ribosylation factor 92.4 0.058 2E-06 53.0 2.9 22 267-288 31-52 (192)
406 2fv8_A H6, RHO-related GTP-bin 92.4 0.052 1.8E-06 53.9 2.5 22 267-288 27-48 (207)
407 4ag6_A VIRB4 ATPase, type IV s 92.4 0.051 1.7E-06 60.1 2.7 25 264-288 34-58 (392)
408 2j1l_A RHO-related GTP-binding 92.3 0.061 2.1E-06 53.8 3.0 22 267-288 36-57 (214)
409 3lv8_A DTMP kinase, thymidylat 92.3 0.067 2.3E-06 55.2 3.3 25 264-288 26-50 (236)
410 3umf_A Adenylate kinase; rossm 92.3 0.072 2.5E-06 54.3 3.5 26 263-288 27-52 (217)
411 3zvl_A Bifunctional polynucleo 92.3 0.065 2.2E-06 60.0 3.4 26 263-288 256-281 (416)
412 2iwr_A Centaurin gamma 1; ANK 92.3 0.044 1.5E-06 52.6 1.7 22 267-288 9-30 (178)
413 2fu5_C RAS-related protein RAB 92.3 0.042 1.5E-06 52.9 1.6 22 267-288 10-31 (183)
414 3c5c_A RAS-like protein 12; GD 92.2 0.059 2E-06 52.6 2.7 22 267-288 23-44 (187)
415 1gwn_A RHO-related GTP-binding 92.2 0.056 1.9E-06 53.9 2.5 22 267-288 30-51 (205)
416 2fh5_B SR-beta, signal recogni 92.2 0.06 2.1E-06 53.5 2.7 22 267-288 9-30 (214)
417 3h4m_A Proteasome-activating n 92.2 0.061 2.1E-06 56.3 2.8 27 263-289 49-75 (285)
418 4djt_A GTP-binding nuclear pro 92.1 0.041 1.4E-06 54.9 1.3 22 267-288 13-34 (218)
419 3d3q_A TRNA delta(2)-isopenten 92.1 0.071 2.4E-06 58.0 3.3 24 266-289 8-31 (340)
420 3def_A T7I23.11 protein; chlor 92.1 0.066 2.3E-06 55.7 2.9 23 267-289 38-60 (262)
421 1p5z_B DCK, deoxycytidine kina 92.1 0.06 2.1E-06 56.0 2.6 27 263-289 22-48 (263)
422 1sky_E F1-ATPase, F1-ATP synth 92.1 0.074 2.5E-06 60.2 3.5 35 253-288 140-174 (473)
423 3exa_A TRNA delta(2)-isopenten 92.0 0.082 2.8E-06 56.8 3.6 25 265-289 3-27 (322)
424 2gco_A H9, RHO-related GTP-bin 92.0 0.061 2.1E-06 53.1 2.5 22 267-288 27-48 (201)
425 3ld9_A DTMP kinase, thymidylat 92.0 0.086 3E-06 53.9 3.7 26 263-288 19-44 (223)
426 3tmk_A Thymidylate kinase; pho 92.0 0.077 2.6E-06 54.0 3.2 28 263-290 3-30 (216)
427 2i1q_A DNA repair and recombin 92.0 0.089 3E-06 56.5 3.9 34 254-287 86-120 (322)
428 1h65_A Chloroplast outer envel 92.0 0.069 2.4E-06 55.8 3.0 23 267-289 41-63 (270)
429 4tmk_A Protein (thymidylate ki 92.0 0.08 2.7E-06 53.7 3.3 25 264-288 2-26 (213)
430 2x77_A ADP-ribosylation factor 91.9 0.058 2E-06 52.4 2.1 22 267-288 24-45 (189)
431 2g3y_A GTP-binding protein GEM 91.9 0.078 2.7E-06 53.5 3.1 22 267-288 39-60 (211)
432 2ocp_A DGK, deoxyguanosine kin 91.9 0.086 2.9E-06 54.0 3.5 25 265-289 2-26 (241)
433 2p65_A Hypothetical protein PF 91.9 0.067 2.3E-06 51.4 2.5 24 265-288 43-66 (187)
434 3cnl_A YLQF, putative uncharac 91.8 0.088 3E-06 55.1 3.5 24 266-289 100-123 (262)
435 2zts_A Putative uncharacterize 91.7 0.1 3.6E-06 52.9 3.9 32 255-286 19-51 (251)
436 2atx_A Small GTP binding prote 91.7 0.07 2.4E-06 52.0 2.5 22 267-288 20-41 (194)
437 1l8q_A Chromosomal replication 91.7 0.059 2E-06 57.7 2.0 42 394-435 96-138 (324)
438 3r7w_A Gtpase1, GTP-binding pr 91.7 0.19 6.5E-06 53.6 6.0 24 265-288 3-26 (307)
439 1njg_A DNA polymerase III subu 91.7 0.094 3.2E-06 52.2 3.4 22 267-288 47-68 (250)
440 3tqf_A HPR(Ser) kinase; transf 91.6 0.14 4.7E-06 50.3 4.4 36 252-288 4-39 (181)
441 3crm_A TRNA delta(2)-isopenten 91.6 0.092 3.1E-06 56.7 3.4 24 266-289 6-29 (323)
442 2h92_A Cytidylate kinase; ross 91.6 0.08 2.7E-06 53.1 2.8 25 265-289 3-27 (219)
443 2hf9_A Probable hydrogenase ni 91.5 0.08 2.7E-06 53.1 2.8 22 267-288 40-61 (226)
444 3cmw_A Protein RECA, recombina 91.5 0.35 1.2E-05 62.8 9.1 27 261-287 728-754 (1706)
445 2yc2_C IFT27, small RAB-relate 91.4 0.043 1.5E-06 53.9 0.5 22 267-288 22-43 (208)
446 3sr0_A Adenylate kinase; phosp 91.3 0.1 3.6E-06 52.5 3.3 22 267-288 2-23 (206)
447 4dcu_A GTP-binding protein ENG 91.3 0.084 2.9E-06 59.7 2.9 22 267-288 25-46 (456)
448 2hup_A RAS-related protein RAB 91.3 0.082 2.8E-06 52.3 2.5 22 267-288 31-52 (201)
449 3cpj_B GTP-binding protein YPT 91.3 0.086 3E-06 53.0 2.7 22 267-288 15-36 (223)
450 3foz_A TRNA delta(2)-isopenten 91.1 0.12 4.1E-06 55.4 3.6 25 265-289 10-34 (316)
451 4gzl_A RAS-related C3 botulinu 90.9 0.094 3.2E-06 52.0 2.5 22 267-288 32-53 (204)
452 2qz4_A Paraplegin; AAA+, SPG7, 90.8 0.12 4E-06 53.1 3.3 24 265-288 39-62 (262)
453 2j0v_A RAC-like GTP-binding pr 90.8 0.098 3.3E-06 51.9 2.5 22 267-288 11-32 (212)
454 3q3j_B RHO-related GTP-binding 90.7 0.1 3.6E-06 52.2 2.7 22 267-288 29-50 (214)
455 3eph_A TRNA isopentenyltransfe 90.7 0.12 4.2E-06 57.3 3.4 25 265-289 2-26 (409)
456 1puj_A YLQF, conserved hypothe 90.4 0.16 5.4E-06 53.8 3.8 25 265-289 120-144 (282)
457 2x2e_A Dynamin-1; nitration, h 90.4 0.11 3.8E-06 56.6 2.7 23 267-289 33-55 (353)
458 2vhj_A Ntpase P4, P4; non- hyd 90.3 0.13 4.5E-06 55.4 3.1 28 260-287 118-145 (331)
459 1sxj_D Activator 1 41 kDa subu 90.1 0.036 1.2E-06 59.7 -1.5 28 396-424 133-160 (353)
460 2orw_A Thymidine kinase; TMTK, 89.9 0.17 5.9E-06 49.8 3.3 22 264-285 2-24 (184)
461 1ypw_A Transitional endoplasmi 89.7 0.052 1.8E-06 66.0 -0.7 32 258-289 504-535 (806)
462 3n70_A Transport activator; si 89.7 0.17 5.9E-06 47.5 3.1 25 264-288 23-47 (145)
463 4a9a_A Ribosome-interacting GT 89.6 0.25 8.6E-06 54.4 4.7 38 267-304 74-120 (376)
464 3l0i_B RAS-related protein RAB 89.6 0.047 1.6E-06 53.7 -1.0 23 267-289 35-57 (199)
465 2hjg_A GTP-binding protein ENG 89.5 0.15 5.2E-06 57.3 2.9 22 267-288 5-26 (436)
466 3p32_A Probable GTPase RV1496/ 89.5 0.17 5.9E-06 55.2 3.3 24 265-288 79-102 (355)
467 3syl_A Protein CBBX; photosynt 89.4 0.18 6.1E-06 53.2 3.3 25 264-288 66-90 (309)
468 1wxq_A GTP-binding protein; st 89.4 0.16 5.4E-06 56.5 3.0 23 267-289 2-24 (397)
469 2chg_A Replication factor C sm 89.4 0.18 6.1E-06 49.6 3.0 21 268-288 41-61 (226)
470 3th5_A RAS-related C3 botulinu 88.9 0.069 2.4E-06 52.7 0.0 21 267-287 32-52 (204)
471 3geh_A MNME, tRNA modification 89.3 0.13 4.4E-06 58.4 2.2 25 264-288 223-247 (462)
472 1mky_A Probable GTP-binding pr 89.3 0.3 1E-05 54.8 5.2 22 267-288 3-24 (439)
473 2v1u_A Cell division control p 89.2 0.15 5E-06 55.3 2.5 26 263-288 42-67 (387)
474 3gmt_A Adenylate kinase; ssgci 89.2 0.18 6.2E-06 51.7 3.0 22 267-288 10-31 (230)
475 1f5n_A Interferon-induced guan 89.1 0.18 6.2E-06 58.8 3.3 26 264-289 37-62 (592)
476 2r62_A Cell division protease 88.8 0.087 3E-06 54.6 0.2 21 268-288 47-67 (268)
477 3gj0_A GTP-binding nuclear pro 88.7 0.13 4.6E-06 51.3 1.7 21 267-287 17-38 (221)
478 1lnz_A SPO0B-associated GTP-bi 88.7 0.24 8.1E-06 53.9 3.7 33 256-288 149-181 (342)
479 1d2n_A N-ethylmaleimide-sensit 88.7 0.22 7.6E-06 51.7 3.3 25 264-288 63-87 (272)
480 1xwi_A SKD1 protein; VPS4B, AA 88.6 0.23 7.7E-06 53.5 3.4 27 263-289 43-69 (322)
481 3cmu_A Protein RECA, recombina 88.5 0.71 2.4E-05 60.8 8.4 34 254-287 370-405 (2050)
482 2qpt_A EH domain-containing pr 88.4 0.2 7E-06 58.0 3.1 23 267-289 67-89 (550)
483 3dm5_A SRP54, signal recogniti 88.4 0.25 8.6E-06 55.6 3.7 24 264-287 99-122 (443)
484 3t15_A Ribulose bisphosphate c 88.2 0.22 7.6E-06 52.7 3.0 23 266-288 37-59 (293)
485 1knx_A Probable HPR(Ser) kinas 88.2 0.52 1.8E-05 50.5 5.8 36 252-288 135-170 (312)
486 2qgz_A Helicase loader, putati 88.2 0.26 9E-06 52.7 3.5 24 265-288 152-175 (308)
487 3uk6_A RUVB-like 2; hexameric 88.1 0.25 8.4E-06 53.6 3.3 26 263-288 68-93 (368)
488 3ec1_A YQEH GTPase; atnos1, at 88.0 0.2 6.7E-06 55.1 2.5 25 264-288 161-185 (369)
489 1g8f_A Sulfate adenylyltransfe 88.0 0.23 7.8E-06 57.0 3.1 27 263-289 393-419 (511)
490 3eie_A Vacuolar protein sortin 87.8 0.27 9.4E-06 52.6 3.4 25 264-288 50-74 (322)
491 4hlc_A DTMP kinase, thymidylat 87.7 0.31 1.1E-05 48.9 3.5 25 265-289 2-26 (205)
492 3h2y_A GTPase family protein; 87.7 0.2 6.8E-06 55.1 2.3 25 264-288 159-183 (368)
493 2j69_A Bacterial dynamin-like 87.6 0.27 9.3E-06 58.6 3.6 26 263-288 67-92 (695)
494 3gee_A MNME, tRNA modification 87.6 0.19 6.5E-06 57.3 2.1 25 264-288 232-256 (476)
495 1x6v_B Bifunctional 3'-phospho 87.6 0.29 9.9E-06 57.5 3.7 25 264-288 51-75 (630)
496 2v3c_C SRP54, signal recogniti 87.6 0.17 5.9E-06 56.9 1.7 23 266-288 100-122 (432)
497 1ofh_A ATP-dependent HSL prote 87.5 0.25 8.6E-06 51.8 2.9 23 266-288 51-73 (310)
498 2qby_B CDC6 homolog 3, cell di 87.4 0.29 9.8E-06 53.2 3.3 24 265-288 45-68 (384)
499 3d8b_A Fidgetin-like protein 1 87.3 0.3 1E-05 53.3 3.4 27 263-289 115-141 (357)
500 3co5_A Putative two-component 87.3 0.2 7E-06 46.9 1.8 24 265-288 27-50 (143)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2e-40 Score=347.58 Aligned_cols=205 Identities=23% Similarity=0.351 Sum_probs=168.9
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||+++|... ...+.+|+|||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 6899999998521 1235799999999999999999999999999999999997665 3799999999875
Q ss_pred ccc-------cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccch-hhhccCCCCCC
Q 044554 307 QET-------FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLR-KALVGLPGLNG 378 (829)
Q Consensus 307 ~~~-------~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-~~~vg~~~~~~ 378 (829)
... .++.+|||+|++.+++.+||+||+.++...+.....+.++..++++++++.+++.+.. +..+ ..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hh
Confidence 321 1245999999999999999999999986544322345566667789999999998753 6544 48
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe--------------cCcEEEE
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK--------------RGGQEIY 443 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~--------------~~G~~vy 443 (829)
||||||||++|||||+.+|++|+|||||+|||+.++.++++.|++++++ |+|||++.| ++|+++.
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999999765 999966544 3566666
Q ss_pred EcCC
Q 044554 444 VGPL 447 (829)
Q Consensus 444 ~G~~ 447 (829)
.|+.
T Consensus 226 ~~~~ 229 (235)
T 3tif_A 226 EEKL 229 (235)
T ss_dssp EEEC
T ss_pred EcCh
Confidence 6654
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.2e-40 Score=367.57 Aligned_cols=205 Identities=23% Similarity=0.308 Sum_probs=176.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+++|... .+.+.+|+|||+++++||++||+||||||||||+|+|+|..++ .+|+|.++|+++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 59999999999521 1346799999999999999999999999999999999997665 379999999987
Q ss_pred Ccc------ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCC
Q 044554 306 KQE------TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGL 379 (829)
Q Consensus 306 ~~~------~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L 379 (829)
... ..++.+|||+|++.+++.+||+||+.++...+ ..++++.+++++++++.+||.+..++.. ..|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 532 23567999999999999999999999987654 2456666778999999999998887754 589
Q ss_pred CHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEE
Q 044554 380 STEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIY 443 (829)
Q Consensus 380 SgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy 443 (829)
||||||||+|||||+.+|++|+|||||||||+.++.+++++|++++++ |.||+++.| ++|+++.
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 244 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999764 999954332 4799999
Q ss_pred EcCCCC
Q 044554 444 VGPLGE 449 (829)
Q Consensus 444 ~G~~~~ 449 (829)
.|++.+
T Consensus 245 ~g~~~e 250 (366)
T 3tui_C 245 QDTVSE 250 (366)
T ss_dssp CCBHHH
T ss_pred EcCHHH
Confidence 998743
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.1e-40 Score=342.74 Aligned_cols=188 Identities=21% Similarity=0.310 Sum_probs=162.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~y-------------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVI-------------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEeEEEEE-------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 48999999998 236799999999999999999999999999999999997665 379999999987
Q ss_pred Cccc------cc-cceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCC
Q 044554 306 KQET------FT-CISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG 378 (829)
Q Consensus 306 ~~~~------~~-~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 378 (829)
.... .+ +.++||+|++.+++.+||+||+.++...+ ..+.++..++++++++.++|.+..++.+ ..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YE 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4321 22 56999999999999999999999876543 2334445567899999999998887765 47
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.|
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 198 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 9999999999999999999999999999999999999999999999877999977655
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.6e-40 Score=365.99 Aligned_cols=200 Identities=26% Similarity=0.383 Sum_probs=176.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|..++. +|+|.++|+++
T Consensus 3 ~l~~~~l~~~y-------------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT--SGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEEC
T ss_pred EEEEEeEEEEE-------------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC--CeEEEECCEEC
Confidence 48999999998 3468999999999999999999999999999999999987653 79999999987
Q ss_pred Ccc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
... ..++.+|||+|+..++|.+||+||+.|+.+.+ ..++++.+++++++++.++|.+..++.+ ++||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHH
Confidence 542 33567999999999999999999999987654 3456667788999999999999888765 48999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE----------------EEecCcEEEEEcCC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLF----------------LLKRGGQEIYVGPL 447 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvll----------------ll~~~G~~vy~G~~ 447 (829)
|||+|||||+.+|++|+|||||||||+..+.++.+.|+++.++ |.|+|+ +| ++|+++..|++
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl-~~G~i~~~g~~ 218 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL-DAGRVAQVGKP 218 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEE-ETTEEEEEECH
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEE-ECCEEEEEeCH
Confidence 9999999999999999999999999999999999999999765 999843 44 57999999987
Q ss_pred CC
Q 044554 448 GE 449 (829)
Q Consensus 448 ~~ 449 (829)
.+
T Consensus 219 ~~ 220 (381)
T 3rlf_A 219 LE 220 (381)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3e-40 Score=364.23 Aligned_cols=200 Identities=26% Similarity=0.433 Sum_probs=172.6
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+++| +++.+|+|||+++++||+++|+||||||||||||+|+|..++. +|+|.++|+++
T Consensus 4 ~l~i~~ls~~y-------------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSF-------------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS--EEEEEETTEEE
T ss_pred EEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 48999999998 3468999999999999999999999999999999999977653 79999999986
Q ss_pred ----Cc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCC
Q 044554 306 ----KQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 306 ----~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 380 (829)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.++|.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 21 234567999999999999999999999986543 2344556678999999999999988865 4899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEE----------------EEecCcEEEE
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTV-DTGRTVLF----------------LLKRGGQEIY 443 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~-~~g~tvll----------------ll~~~G~~vy 443 (829)
|||||||+|||||+.+|++|+|||||||||+..+.++.+.++++. +.|.|+|+ +| ++|+++.
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl-~~G~i~~ 219 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVM-KQGRILQ 219 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEE-ETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEE-ECCEEEE
Confidence 999999999999999999999999999999999999999888875 46899843 44 5799999
Q ss_pred EcCCCC
Q 044554 444 VGPLGE 449 (829)
Q Consensus 444 ~G~~~~ 449 (829)
.|++.+
T Consensus 220 ~g~~~e 225 (359)
T 3fvq_A 220 TASPHE 225 (359)
T ss_dssp EECHHH
T ss_pred EeCHHH
Confidence 998754
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=6e-40 Score=349.15 Aligned_cols=199 Identities=26% Similarity=0.352 Sum_probs=168.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.| +++.+|+|||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEES
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 48999999998 236799999999999999999999999999999999997665 379999999886
Q ss_pred C--c---cccccceeEEecCCCCCCCCCHHHHHHHhh-hhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCC
Q 044554 306 K--Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSA-WLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGL 379 (829)
Q Consensus 306 ~--~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a-~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L 379 (829)
. . ...++.++||+|++.+++.+||+||+.++. ..+ ..+.++..++++++++.++|.+..++.+ ..|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123567999999999999999999999864 322 2334455567899999999998888765 479
Q ss_pred CHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEE
Q 044554 380 STEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYV 444 (829)
Q Consensus 380 SgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~ 444 (829)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+||+++.| ++|+++..
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999999877999854333 35777777
Q ss_pred cCC
Q 044554 445 GPL 447 (829)
Q Consensus 445 G~~ 447 (829)
|++
T Consensus 241 g~~ 243 (263)
T 2olj_A 241 GKP 243 (263)
T ss_dssp ECH
T ss_pred CCH
Confidence 765
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.8e-40 Score=352.71 Aligned_cols=201 Identities=22% Similarity=0.374 Sum_probs=170.0
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+++|. +++.+|+|||+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 589999999983 234699999999999999999999999999999999997665 379999999987
Q ss_pred Cc-----cccccceeEEecCCC-CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCC
Q 044554 306 KQ-----ETFTCISGYCEQNDI-HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGL 379 (829)
Q Consensus 306 ~~-----~~~~~~~~yv~Q~~~-~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L 379 (829)
.. ...++.+|||+|++. .+..+||+||+.|+...+ ..+.++..++++++++.++|.+..++.+ ..|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 31 124567999999863 445799999999987543 3455666778999999999999888765 479
Q ss_pred CHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEEe---------------cCcEEEE
Q 044554 380 STEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTV-DTGRTVLFLLK---------------RGGQEIY 443 (829)
Q Consensus 380 SgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~-~~g~tvllll~---------------~~G~~vy 443 (829)
||||||||+|||||+.+|++|+|||||||||+.++..+++.|++++ ++|+|||++.| ++|+++.
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~ 224 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL 224 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999997 56999855433 4688888
Q ss_pred EcCCC
Q 044554 444 VGPLG 448 (829)
Q Consensus 444 ~G~~~ 448 (829)
.|++.
T Consensus 225 ~g~~~ 229 (275)
T 3gfo_A 225 QGNPK 229 (275)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88764
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9e-40 Score=346.57 Aligned_cols=199 Identities=24% Similarity=0.337 Sum_probs=168.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.| +++.+|+|||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred eEEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 48999999998 236799999999999999999999999999999999997654 379999999986
Q ss_pred Cc--cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 306 KQ--ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 306 ~~--~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
.. ...++.+||++|++.+++.+||+||+.+....+ ..+.++..+.++++++.++|.+..++.+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 224567999999999999999999999876443 1233444567899999999998888765 4799999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcCC
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~~ 447 (829)
|||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+||+++.| ++|++++.|++
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 230 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTV 230 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999877999865443 35677766654
No 9
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-39 Score=346.45 Aligned_cols=188 Identities=21% Similarity=0.289 Sum_probs=161.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.| +++.+|+|||+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 6 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 48999999998 236799999999999999999999999999999999997664 379999999886
Q ss_pred Cc----------------cccccceeEEecCCCCCCCCCHHHHHHHhh-hhcCCCCCCHHHHHHHHHHHHHHcCCccc-h
Q 044554 306 KQ----------------ETFTCISGYCEQNDIHSPNVTVYESLLYSA-WLRLPPEVDSQTRKMFIEEVMELVELNTL-R 367 (829)
Q Consensus 306 ~~----------------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a-~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~ 367 (829)
.. ...++.+|||+|++.+++.+||+||+.++. ..+ ..+.++.+++++++++.++|.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123567999999999999999999999864 322 23444555678999999999988 7
Q ss_pred hhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 368 KALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 368 ~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
++.+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++.|
T Consensus 148 ~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 211 (262)
T 1b0u_A 148 GKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211 (262)
T ss_dssp TSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 7765 479999999999999999999999999999999999999999999999877999865544
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.9e-40 Score=346.85 Aligned_cols=202 Identities=24% Similarity=0.277 Sum_probs=168.0
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+++| +++.+|+|||+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeeEEEE-------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 48999999998 236799999999999999999999999999999999997665 379999999987
Q ss_pred Ccc----ccccceeEEecCCCCCCCCCHHHHHHHhhhh-cCCC---------CCCHHHHHHHHHHHHHHcCCccchhhhc
Q 044554 306 KQE----TFTCISGYCEQNDIHSPNVTVYESLLYSAWL-RLPP---------EVDSQTRKMFIEEVMELVELNTLRKALV 371 (829)
Q Consensus 306 ~~~----~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~l-r~~~---------~~~~~~~~~~v~~vl~~l~L~~~~~~~v 371 (829)
... ..++.++||+|++.+++.+||+||+.++... +... ..+.++.+++++++++.++|.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 432 1245699999999888999999999987542 1110 0122344567899999999998888765
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------
Q 044554 372 GLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------- 436 (829)
Q Consensus 372 g~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------- 436 (829)
..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+||+++.|
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999999877999855433
Q ss_pred cCcEEEEEcCC
Q 044554 437 RGGQEIYVGPL 447 (829)
Q Consensus 437 ~~G~~vy~G~~ 447 (829)
++|++++.|++
T Consensus 227 ~~G~i~~~g~~ 237 (257)
T 1g6h_A 227 FNGQIIAEGRG 237 (257)
T ss_dssp ETTEEEEEEES
T ss_pred ECCEEEEEeCH
Confidence 35777777765
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-39 Score=359.49 Aligned_cols=200 Identities=25% Similarity=0.354 Sum_probs=171.9
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYF-------------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECC
Confidence 8899999998 346799999999999999999999999999999999998665 3799999999875
Q ss_pred cc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 QE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
.. ..++.+|||+|+..+++++||+||+.|+.+.+ ..++++.+++++++++.++|.+..++.. +.|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999986433 2333444567899999999999888765 479999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCCC
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLGE 449 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~~ 449 (829)
||+|||||+.+|++|+|||||||||+.++.++.+.|+++.++ |.|++++.| ++|+++..|++.+
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999765 888854332 4799999998753
No 12
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.9e-39 Score=359.41 Aligned_cols=201 Identities=26% Similarity=0.351 Sum_probs=173.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEEC
Confidence 38899999998 246799999999999999999999999999999999998665 379999999876
Q ss_pred Cc-------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCC
Q 044554 306 KQ-------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG 378 (829)
Q Consensus 306 ~~-------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 378 (829)
.. ...++.+|||+|+..+++++||+||+.|+.+.+ ..++++.+++++++++.++|.+..++.+ +.
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 139 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----cc
Confidence 32 223567999999999999999999999987654 2345556678999999999999888765 47
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEE
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEI 442 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~v 442 (829)
|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.++ |.|+|++.| ++|+++
T Consensus 140 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 219 (372)
T 1g29_1 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219 (372)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999999765 888854332 479999
Q ss_pred EEcCCCC
Q 044554 443 YVGPLGE 449 (829)
Q Consensus 443 y~G~~~~ 449 (829)
..|++.+
T Consensus 220 ~~g~~~~ 226 (372)
T 1g29_1 220 QVGSPDE 226 (372)
T ss_dssp EEECHHH
T ss_pred EeCCHHH
Confidence 9998743
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-39 Score=359.01 Aligned_cols=200 Identities=27% Similarity=0.385 Sum_probs=172.8
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKF-------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEES-------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 8899999987 335799999999999999999999999999999999998665 3799999999875
Q ss_pred cc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 QE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
.. ..++.+|||+|+..+++.+||+||+.|+.+.+ ..++++.+++++++++.++|.+..++.. +.|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999987543 2345556678999999999999888765 489999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCCC
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLGE 449 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~~ 449 (829)
||+|||||+.+|++|+|||||||||+.++.++.+.|+++.++ |.|+|++.| ++|+++..|++.+
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999999765 888854332 4799999998743
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.7e-39 Score=356.74 Aligned_cols=203 Identities=24% Similarity=0.367 Sum_probs=174.7
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++++||+++|+ +++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.
T Consensus 12 ~~~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~ 77 (355)
T 1z47_A 12 SMTIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGK 77 (355)
T ss_dssp CEEEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTE
T ss_pred CceEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCE
Confidence 34699999999761 234699999999999999999999999999999999998765 3799999999
Q ss_pred ecCc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 304 PKKQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 304 ~~~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
++.. ...++.+|||+|+..+++.+||+||+.|+.+.+ ..++++.+++++++++.++|.+..++.. ++||||
T Consensus 78 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGG 149 (355)
T 1z47_A 78 RVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGG 149 (355)
T ss_dssp ECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHH
T ss_pred ECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 8753 234577999999999999999999999987653 2345566678999999999999888765 489999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEE----------------EEEecCcEEEEEc
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVL----------------FLLKRGGQEIYVG 445 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvl----------------lll~~~G~~vy~G 445 (829)
|||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.++ |.|+| +++ ++|+++..|
T Consensus 150 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl-~~G~i~~~g 228 (355)
T 1z47_A 150 QQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVL-HEGNVEQFG 228 (355)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEE-ECCEEEEEc
Confidence 999999999999999999999999999999999999999999765 88884 344 479999999
Q ss_pred CCCC
Q 044554 446 PLGE 449 (829)
Q Consensus 446 ~~~~ 449 (829)
++.+
T Consensus 229 ~~~~ 232 (355)
T 1z47_A 229 TPEE 232 (355)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8753
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.9e-39 Score=346.13 Aligned_cols=198 Identities=25% Similarity=0.308 Sum_probs=169.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.| +++.+|+|||+++++||+++|+||||||||||+|+|+|..++. +|+|.++|+++
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--HGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS--SCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEEC
Confidence 58999999998 3468999999999999999999999999999999999976543 69999999987
Q ss_pred Ccc---ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 306 KQE---TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 306 ~~~---~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
... ..++.++|++|++.+++.+||+||+.++.... ..++.+++++++++.+++.+..++.+ ..||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 532 34567899999998888999999999976433 11223456899999999999888765 479999
Q ss_pred HHHHHHHHHHhhh------CCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE----------------EEecCc
Q 044554 383 KRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLF----------------LLKRGG 439 (829)
Q Consensus 383 erqRlsIa~aL~~------~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvll----------------ll~~~G 439 (829)
||||++|||||+. +|++|+|||||||||+.++.++++.|++++++ |+||++ ++ ++|
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl-~~G 224 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLL-AQG 224 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEE-ETT
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEE-ECC
Confidence 9999999999999 99999999999999999999999999999866 568843 44 479
Q ss_pred EEEEEcCCCC
Q 044554 440 QEIYVGPLGE 449 (829)
Q Consensus 440 ~~vy~G~~~~ 449 (829)
++++.|++++
T Consensus 225 ~i~~~g~~~~ 234 (266)
T 4g1u_C 225 KLVACGTPEE 234 (266)
T ss_dssp EEEEEECHHH
T ss_pred EEEEEcCHHH
Confidence 9999999754
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-39 Score=338.49 Aligned_cols=187 Identities=25% Similarity=0.369 Sum_probs=157.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEE-------------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 48999999998 236799999999999999999999999999999999997664 379999999987
Q ss_pred Cccc----cccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcC-CccchhhhccCCCCCCCC
Q 044554 306 KQET----FTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVE-LNTLRKALVGLPGLNGLS 380 (829)
Q Consensus 306 ~~~~----~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~-L~~~~~~~vg~~~~~~LS 380 (829)
.... .++.++|++|++.+++.+||+||+.++.... .+.++..+.++++++.++ +.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 5321 2345999999999999999999999874211 122234456788999995 887776654 5899
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+||+++.|
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtH 197 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999878899966554
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.9e-39 Score=358.68 Aligned_cols=200 Identities=24% Similarity=0.345 Sum_probs=172.3
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCcee--eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
++++||+++|. ++. +|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|++
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 88999999982 245 99999999999999999999999999999999997665 37999999987
Q ss_pred cCc------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCC
Q 044554 305 KKQ------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNG 378 (829)
Q Consensus 305 ~~~------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 378 (829)
+.. ...++.+|||+|+..+++.+||+||+.|+.+.+ ..++++.+++++++++.++|.+..++.+ +.
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 632 234677999999999999999999999986543 2345566678999999999999888765 47
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEE
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEI 442 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~v 442 (829)
|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.++ |.|+|++.| ++|+++
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999764 888854332 479999
Q ss_pred EEcCCCC
Q 044554 443 YVGPLGE 449 (829)
Q Consensus 443 y~G~~~~ 449 (829)
..|++.+
T Consensus 221 ~~g~~~~ 227 (353)
T 1oxx_K 221 QVGKPED 227 (353)
T ss_dssp EEECHHH
T ss_pred EEcCHHH
Confidence 9998754
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.1e-39 Score=358.73 Aligned_cols=201 Identities=22% Similarity=0.352 Sum_probs=166.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+++| +++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i 75 (372)
T 1v43_A 11 EVKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 38999999998 236799999999999999999999999999999999998765 379999999987
Q ss_pred Ccc-ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
... ..++.+|||+|+..+++++||+||+.|+.+.+ ..++++.+++++++++.++|.+..++.. +.||||||
T Consensus 76 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~ 147 (372)
T 1v43_A 76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 147 (372)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHH
Confidence 532 23567999999999999999999999975432 2345566678999999999999888764 58999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLG 448 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~ 448 (829)
|||+|||||+.+|++|+|||||||||+.++.++.+.|+++.++ |.|+|++.| ++|+++..|++.
T Consensus 148 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~ 227 (372)
T 1v43_A 148 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT 227 (372)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999765 888854332 479999999874
Q ss_pred C
Q 044554 449 E 449 (829)
Q Consensus 449 ~ 449 (829)
+
T Consensus 228 ~ 228 (372)
T 1v43_A 228 E 228 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=8.3e-39 Score=352.54 Aligned_cols=196 Identities=23% Similarity=0.313 Sum_probs=168.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||+++| +++ +|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.
T Consensus 2 l~~~~l~~~y-------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW-------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC-------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 6789999987 235 99999999999999999999999999999999998665 3799999999875
Q ss_pred c-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 Q-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
. ...++.+|||+|+..+++.+||+||+.|+...+.. +++ ++++++++.++|.+..++.. ++|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 23456799999999999999999999998764321 111 56899999999999888765 479999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCCC
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLGE 449 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~~ 449 (829)
||+|||||+.+|++|+|||||||||+.++.++.+.|+++.++ |.|+|++.| ++|+++..|++.+
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999999764 888854332 4799999998753
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-38 Score=332.53 Aligned_cols=182 Identities=21% Similarity=0.321 Sum_probs=154.9
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|++++|. + +|+|+|+++++ |+++|+||||||||||||+|+|..++. +|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECC
Confidence 67899999882 2 49999999999 999999999999999999999976653 799999999864
Q ss_pred c-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHH
Q 044554 307 Q-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 307 ~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerq 385 (829)
. ...++.+||++|++.+++.+||+||+.++...+ .....+++++++++.++|.+..++.+ ..|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 234567999999999999999999999875322 11222566889999999998887765 479999999
Q ss_pred HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 386 RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 386 RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
|++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+||+++.|
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtH 185 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 999999999999999999999999999999999999999764 899865544
No 21
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-38 Score=328.76 Aligned_cols=184 Identities=22% Similarity=0.315 Sum_probs=159.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|+++.| ++ .+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+
T Consensus 9 ~~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~ 72 (214)
T 1sgw_A 9 SKLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVP 72 (214)
T ss_dssp CEEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred ceEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEE
Confidence 459999999987 33 799999999999999999999999999999999997664 37999999988
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
.. ..++.++|++|++.+++.+||+||+.++...+.. ..+ .+.++++++.+++.+. +..+ ..||||||
T Consensus 73 ~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~----~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqk 139 (214)
T 1sgw_A 73 IT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDL-KKKL-----GELSQGTI 139 (214)
T ss_dssp GG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHH
T ss_pred hh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH----HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHH
Confidence 75 3567799999999999999999999987654311 111 3457899999999877 6554 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+||+++.|+
T Consensus 140 qrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 192 (214)
T 1sgw_A 140 RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192 (214)
T ss_dssp HHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999998778999999875
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.2e-38 Score=339.99 Aligned_cols=203 Identities=23% Similarity=0.359 Sum_probs=163.8
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.| +++.+|+|||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTBCC
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 59999999998 236799999999999999999999999999999999997665 379999999876
Q ss_pred C--c---cccccceeEEecCCCCC--CCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCC
Q 044554 306 K--Q---ETFTCISGYCEQNDIHS--PNVTVYESLLYSAWLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLN 377 (829)
Q Consensus 306 ~--~---~~~~~~~~yv~Q~~~~~--~~lTV~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~ 377 (829)
. . ...++.++|++|++.+. +.+||+||+.++...... .....++..++++++++.++|.+..++.+ .
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----G 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 4 2 23456799999987543 356999999986421100 01112333467889999999998888765 4
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeE--EEEEe---------------cCcE
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTV--LFLLK---------------RGGQ 440 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tv--llll~---------------~~G~ 440 (829)
.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|| |++.| ++|+
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~ 240 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999998768887 76544 3578
Q ss_pred EEEEcCCC
Q 044554 441 EIYVGPLG 448 (829)
Q Consensus 441 ~vy~G~~~ 448 (829)
+++.|+++
T Consensus 241 i~~~g~~~ 248 (279)
T 2ihy_A 241 SIQQGAVE 248 (279)
T ss_dssp EEEEEEHH
T ss_pred EEEECCHH
Confidence 88777654
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.1e-38 Score=335.98 Aligned_cols=202 Identities=23% Similarity=0.332 Sum_probs=164.1
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++||+++|... ....+.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRG--------TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTT--------STTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEecCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECc
Confidence 7899999998310 00015799999999999999999999999999999999997664 3799999998875
Q ss_pred ccccccceeEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc--cchhhhccCCCCCCCCHHH
Q 044554 307 QETFTCISGYCEQND-IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN--TLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 307 ~~~~~~~~~yv~Q~~-~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~--~~~~~~vg~~~~~~LSgGe 383 (829)
....++.+|||+|++ ..++.+||+||+.++..... +.++.+++++++++.+||. +..++.+ +.|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 333456799999995 46678999999998753221 1112234588999999998 8777765 4799999
Q ss_pred HHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcEEEEEcCC
Q 044554 384 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQEIYVGPL 447 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~~vy~G~~ 447 (829)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++.| ++|+++..|++
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 222 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTR 222 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999877999865443 35777777764
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.1e-38 Score=332.32 Aligned_cols=192 Identities=27% Similarity=0.299 Sum_probs=154.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC--CCCCeeEEEEEEcCe
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR--KTSGYITGNIAISGY 303 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~--~~~g~~~G~i~i~G~ 303 (829)
.++++||+++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|. .+ ..+|+|.++|.
T Consensus 3 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~ 67 (250)
T 2d2e_A 3 QLEIRDLWASI-------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGE 67 (250)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTE
T ss_pred eEEEEeEEEEE-------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 38899999998 236799999999999999999999999999999999997 33 35799999999
Q ss_pred ecCccc---c-ccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-ccchhhhccCCCCCC
Q 044554 304 PKKQET---F-TCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVEL-NTLRKALVGLPGLNG 378 (829)
Q Consensus 304 ~~~~~~---~-~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-~~~~~~~vg~~~~~~ 378 (829)
++.... . ++.++|++|++.+++.+||+||+.+..........+.++..++++++++.+++ .+..++.+ ..
T Consensus 68 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~ 142 (250)
T 2d2e_A 68 NILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NE 142 (250)
T ss_dssp ECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TC
T ss_pred ECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----cc
Confidence 874321 1 33589999999999999999999986532111112233445678899999999 57777765 35
Q ss_pred -CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 379 -LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 379 -LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++.|+
T Consensus 143 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 202 (250)
T 2d2e_A 143 GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202 (250)
T ss_dssp C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999997779999888764
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.3e-37 Score=330.36 Aligned_cols=205 Identities=25% Similarity=0.312 Sum_probs=164.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.| +++.+|+|||+++++||+++|+||||||||||+|+|+|.......+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 59999999998 23679999999999999999999999999999999999732113579999999986
Q ss_pred Ccc---cc-ccceeEEecCCCCCCCCCHHHHHHHhhh-hc---CCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCC
Q 044554 306 KQE---TF-TCISGYCEQNDIHSPNVTVYESLLYSAW-LR---LPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGL 376 (829)
Q Consensus 306 ~~~---~~-~~~~~yv~Q~~~~~~~lTV~E~l~f~a~-lr---~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~ 376 (829)
... .. ++.++|++|++.+++.+||.|++.+... .+ .....+.++..++++++++.++|. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 431 11 2348999999999999999999987542 11 111223444456789999999996 56666532
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe----------------cCcE
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK----------------RGGQ 440 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~----------------~~G~ 440 (829)
..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+||+++.| ++|+
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGR 242 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCE
Confidence 249999999999999999999999999999999999999999999998777899865433 3577
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
++..|++
T Consensus 243 i~~~g~~ 249 (267)
T 2zu0_C 243 IVKSGDF 249 (267)
T ss_dssp EEEEECT
T ss_pred EEEEcCH
Confidence 7777775
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.8e-37 Score=324.67 Aligned_cols=193 Identities=21% Similarity=0.312 Sum_probs=158.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|. +++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.
T Consensus 4 ~l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~------ 63 (253)
T 2nq2_C 4 ALSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEE------
T ss_pred eEEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE------
Confidence 489999999982 135799999999999999999999999999999999997654 368887
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
.++.++|++|++.+++.+||+||+.++...... .....++..++++++++.++|.+..++.+ ..||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 235689999999888899999999987532211 00112233466899999999998888765 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEEe---------------cCcEEEEEcCCC
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDT-GRTVLFLLK---------------RGGQEIYVGPLG 448 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~-g~tvllll~---------------~~G~~vy~G~~~ 448 (829)
||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++.| ++|+ ++.|+++
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~ 213 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETR 213 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHH
Confidence 9999999999999999999999999999999999999999876 899865443 3577 7777653
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.4e-37 Score=324.51 Aligned_cols=187 Identities=26% Similarity=0.394 Sum_probs=153.7
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+++|+ .+++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 4699999999872 1235799999999999999999999999999999999998665 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhc-------cCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALV-------GLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~v-------g~~ 374 (829)
+.. ..+++.++||+|++.+++ .||+||+.++.. ..+. +.++++++.+++.+..+... +.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~- 141 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGE- 141 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCST-
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhC-
Confidence 753 224567999999988876 699999987531 1122 34677888888877665432 22
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++.|
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH 202 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeC
Confidence 246899999999999999999999999999999999999999999999995 5899966554
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.8e-37 Score=331.84 Aligned_cols=189 Identities=22% Similarity=0.324 Sum_probs=151.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.|.. .+++.+|+|||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPN----------HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTT----------CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 5999999998731 0125699999999999999999999999999999999997665 379999999987
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCC-HH----HHHHHHHHHHHHc--CCccchhhhccCCC
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVD-SQ----TRKMFIEEVMELV--ELNTLRKALVGLPG 375 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~-~~----~~~~~v~~vl~~l--~L~~~~~~~vg~~~ 375 (829)
.. ..+++.++||+|++.+++ .||+||+.++.... .. .+ .....++++++.+ ++.+..+...
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~---- 154 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETG---- 154 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc----
Confidence 43 224567999999998876 69999999864211 11 11 1122345677777 6766666543
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEe
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLK 436 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~ 436 (829)
..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ +|+|||++.|
T Consensus 155 -~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtH 215 (271)
T 2ixe_A 155 -NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215 (271)
T ss_dssp -TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECS
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 47999999999999999999999999999999999999999999999864 4899866554
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.4e-37 Score=335.35 Aligned_cols=198 Identities=26% Similarity=0.336 Sum_probs=160.1
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++++||++.|+ +++.+|+|||+++++||++||+||||||||||+|+|+|..++ .+|+|.++|.
T Consensus 51 ~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCE
Confidence 34699999999983 235799999999999999999999999999999999997765 3799999999
Q ss_pred ecCcc---ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccch-------hhhccC
Q 044554 304 PKKQE---TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLR-------KALVGL 373 (829)
Q Consensus 304 ~~~~~---~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-------~~~vg~ 373 (829)
++... .+++.++||+|++.++ ..||+||+.++.. ..+. +.++++++..++.+.. ++.+|.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~eNi~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLF-NDTIADNIRYGRV-----TAGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCC-SEEHHHHHHTTST-----TCCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccC-cccHHHHHHhhcc-----cCCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 87542 3567899999999887 4699999998742 1122 2355666666665433 344554
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCc
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGG 439 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G 439 (829)
. ...||||||||++|||||+.+|+||+|||||||||+.++..|.+.|+++.+ ++|+|++.| ++|
T Consensus 187 ~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~aD~i~vl~~G 264 (306)
T 3nh6_A 187 R-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVNADQILVIKDG 264 (306)
T ss_dssp T-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHTCSEEEEEETT
T ss_pred C-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHcCCEEEEEECC
Confidence 3 357999999999999999999999999999999999999999999999864 688855433 468
Q ss_pred EEEEEcCC
Q 044554 440 QEIYVGPL 447 (829)
Q Consensus 440 ~~vy~G~~ 447 (829)
+++..|+.
T Consensus 265 ~iv~~G~~ 272 (306)
T 3nh6_A 265 CIVERGRH 272 (306)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 88888875
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.9e-36 Score=319.72 Aligned_cols=190 Identities=22% Similarity=0.364 Sum_probs=159.9
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++. .+|+|+|+++++||+++|+||||||||||||+|+|..++ . |+|.++|.+.
T Consensus 4 ~l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~ 63 (249)
T 2qi9_C 4 VMQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPL 63 (249)
T ss_dssp EEEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEG
T ss_pred EEEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEEC
Confidence 3788888862 489999999999999999999999999999999998764 4 9999999986
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG 382 (829)
.. ..+++.++|++|++.+++.+||+||+.++.. +. .+ .+.++++++.+++.+..++.+ ..||||
T Consensus 64 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 130 (249)
T 2qi9_C 64 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRST-----NQLSGG 130 (249)
T ss_dssp GGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHH
T ss_pred CcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHH
Confidence 43 2345679999999988889999999998631 11 12 345789999999998887764 479999
Q ss_pred HHHHHHHHHHhhhCCC-------cceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe---------------cCcE
Q 044554 383 KRKRLTIAVELVANPS-------IIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------------RGGQ 440 (829)
Q Consensus 383 erqRlsIa~aL~~~p~-------iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------------~~G~ 440 (829)
||||++|||+|+.+|+ +|+|||||+|||+.++..+.+.|++++++|+||+++.| ++|+
T Consensus 131 q~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 210 (249)
T 2qi9_C 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGK 210 (249)
T ss_dssp HHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999 99999999999999999999999999877999854333 3577
Q ss_pred EEEEcCCC
Q 044554 441 EIYVGPLG 448 (829)
Q Consensus 441 ~vy~G~~~ 448 (829)
++..|+++
T Consensus 211 i~~~g~~~ 218 (249)
T 2qi9_C 211 MLASGRRE 218 (249)
T ss_dssp EEEEEEHH
T ss_pred EEEeCCHH
Confidence 77777653
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-36 Score=320.02 Aligned_cols=186 Identities=26% Similarity=0.427 Sum_probs=153.6
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|++++|+ +++.+|+|||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhh
Confidence 68899998762 235699999999999999999999999999999999997654 3799999999864
Q ss_pred c---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhh-------ccCCCC
Q 044554 307 Q---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKAL-------VGLPGL 376 (829)
Q Consensus 307 ~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~-------vg~~~~ 376 (829)
. ..+++.++|++|++.+++ .||+||+.++.. + ..+. +.++++++.+++.+..+.. ++. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCCH----HHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 234667999999998876 599999987531 1 1222 3467888888988766543 222 24
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +|+||+++.|+
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~ 197 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHR 197 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCS
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 6899999999999999999999999999999999999999999999987 68999888764
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8e-36 Score=317.22 Aligned_cols=187 Identities=26% Similarity=0.400 Sum_probs=150.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||+++|.. ...+.+|+|||+++++||+++|+||||||||||+|+|+|..++ +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPK----------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTT----------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---EEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC---CeEEEECCEEh
Confidence 4899999998731 0124699999999999999999999999999999999997653 69999999986
Q ss_pred Cc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccch-------hhhccCCC
Q 044554 306 KQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLR-------KALVGLPG 375 (829)
Q Consensus 306 ~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-------~~~vg~~~ 375 (829)
.. ...++.++||+|++.+++ .||+||+.++.. ..+. +.++++++.+++.+.. ++.++. .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~ 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-K 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-S
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-C
Confidence 43 234567999999998875 699999998531 1122 2356677777765543 333332 2
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ |+||+++.|+
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~ 213 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHR 213 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSS
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 468999999999999999999999999999999999999999999999864 8899776653
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2e-35 Score=314.35 Aligned_cols=180 Identities=19% Similarity=0.275 Sum_probs=149.5
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
++++|++++|... ..++.+|+|+|++++ ||+++|+||||||||||||+|+|.. +. +|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECc
Confidence 6889999998310 012579999999999 9999999999999999999999987 53 799999998764
Q ss_pred cccccccee-EEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCCCCCHHHH
Q 044554 307 QETFTCISG-YCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 307 ~~~~~~~~~-yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~~LSgGer 384 (829)
....++.++ |++|++.+ .+||+||+.+...++ ... .++++++++.+++. +..++.+ ..||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 311256789 99999876 899999999876443 111 24578999999998 8877765 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ||+++.|
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtH 183 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTH 183 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEES
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEc
Confidence 999999999999999999999999999999999999998753 7755544
No 34
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7e-35 Score=344.76 Aligned_cols=203 Identities=27% Similarity=0.380 Sum_probs=164.1
Q ss_pred ce-EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 225 HS-ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 225 ~~-l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
.. ++++||+++|+. .+++.+|+|+|+++++||++||+||||||||||+|+|+|..++ .+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~----------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~ 406 (595)
T 2yl4_A 339 QGALEFKNVHFAYPA----------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP--ASGTISLDGH 406 (595)
T ss_dssp CCCEEEEEEEEECSS----------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCE
Confidence 45 999999999831 1135799999999999999999999999999999999998765 3799999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGL 373 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~ 373 (829)
++.+ ..+++.++||+|++.+++ .||+||+.++...+ ...++ +.++++++.+++.+. .|+.+|.
T Consensus 407 ~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~~~~~~ 479 (595)
T 2yl4_A 407 DIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVTA----EEIQRVAEVANAVAFIRNFPQGFNTVVGE 479 (595)
T ss_dssp ETTTBCHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSCH----HHHHHHHHHTTCHHHHHTSSSGGGCBCSS
T ss_pred EhhhCCHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccCH----HHHHHHHHHcCCHHHHHhCcccccccccC
Confidence 8754 234667999999998876 59999999864210 11222 346788888887654 3555655
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCc
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGG 439 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G 439 (829)
. ..+||||||||++|||||+++|++|+|||||||||+.++..+.+.++++.+ |+|++++.| ++|
T Consensus 480 ~-~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G 557 (595)
T 2yl4_A 480 K-GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKNANMVAVLDQG 557 (595)
T ss_dssp S-SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHHSSEEEEEETT
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHcCCEEEEEECC
Confidence 4 358999999999999999999999999999999999999999999999876 789865444 367
Q ss_pred EEEEEcCCC
Q 044554 440 QEIYVGPLG 448 (829)
Q Consensus 440 ~~vy~G~~~ 448 (829)
+++..|+.+
T Consensus 558 ~i~~~g~~~ 566 (595)
T 2yl4_A 558 KITEYGKHE 566 (595)
T ss_dssp EEEEEECSC
T ss_pred EEEEECCHH
Confidence 777777764
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=9.6e-35 Score=303.30 Aligned_cols=175 Identities=22% Similarity=0.343 Sum_probs=138.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|+ .+++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~-----------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWE-----------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSS-----------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS---
T ss_pred eEEEEEEEEEeC-----------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC---
Confidence 589999999873 1235799999999999999999999999999999999997664 379999998
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchh-------hhccCCCCCC
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRK-------ALVGLPGLNG 378 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~-------~~vg~~~~~~ 378 (829)
.++|++|++.+++. ||+||+.++.. .... ..++.++.+++.+..+ +.++.+ ...
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 37999999988774 99999998531 1111 1334455555543322 223322 468
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEEe
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRT-VRNTVDTGRTVLFLLK 436 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~-l~~l~~~g~tvllll~ 436 (829)
||||||||++|||+|+.+|++++|||||+|||+.++..+++. ++++. +|+||+++.|
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH 188 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTS 188 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcC
Confidence 999999999999999999999999999999999999999997 45554 4788866544
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=331.44 Aligned_cols=198 Identities=23% Similarity=0.291 Sum_probs=162.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+++|. .+++.+|+|||+++++||+++|+||||||||||||+|+|..+ .+|+|.++|++
T Consensus 18 ~~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 4699999999983 134679999999999999999999999999999999999764 37999999998
Q ss_pred cCcc---ccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccC------CC
Q 044554 305 KKQE---TFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGL------PG 375 (829)
Q Consensus 305 ~~~~---~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~------~~ 375 (829)
+... .+++.++||+|+..+++ +||+||+.+.. ... +++++++++.++|.+..++.... ..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 7542 24578999999998887 69999996431 112 23478899999999887765431 11
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEE---------------EEEecCcE
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVL---------------FLLKRGGQ 440 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvl---------------lll~~~G~ 440 (829)
...|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++. ++.|++ ++| ++|+
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~~~aDri~vl-~~G~ 230 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAMLECDQFLVI-EENK 230 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGGTTCSEEEEE-ETTE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHHHhCCEEEEE-ECCE
Confidence 23499999999999999999999999999999999999999999999864 467774 344 5799
Q ss_pred EEEEcCCCC
Q 044554 441 EIYVGPLGE 449 (829)
Q Consensus 441 ~vy~G~~~~ 449 (829)
++..|++.+
T Consensus 231 i~~~g~~~e 239 (390)
T 3gd7_A 231 VRQYDSILE 239 (390)
T ss_dssp EEEESSHHH
T ss_pred EEEECCHHH
Confidence 999998754
No 37
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.8e-35 Score=344.94 Aligned_cols=200 Identities=25% Similarity=0.384 Sum_probs=160.3
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++++|++++|+. +++.+|+|+|+++++||++||+||||||||||+|+|+|..++ .+|+|.+||.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCE
Confidence 346999999998841 235799999999999999999999999999999999998765 3799999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGL 373 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~ 373 (829)
++.+ ..+++.++||+|++.+++. ||+||+.++. + ..++ +.+++.++..++.+. .|+.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 8754 2356789999999988765 9999998863 1 1222 224556666655443 3445554
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCc
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGG 439 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G 439 (829)
. ..+||||||||++|||||+++|++++|||||||||+.++..+.+.++++. +++|++++.| ++|
T Consensus 474 ~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G 551 (578)
T 4a82_A 474 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENG 551 (578)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETT
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 3 35799999999999999999999999999999999999999999999885 4788855433 468
Q ss_pred EEEEEcCCC
Q 044554 440 QEIYVGPLG 448 (829)
Q Consensus 440 ~~vy~G~~~ 448 (829)
+++..|+.+
T Consensus 552 ~i~~~g~~~ 560 (578)
T 4a82_A 552 HIVETGTHR 560 (578)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 888888863
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.4e-34 Score=341.27 Aligned_cols=199 Identities=22% Similarity=0.287 Sum_probs=161.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|++++|+. +++.+|+|+|+++++||++||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEE
T ss_pred CcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEE
Confidence 45999999998731 125699999999999999999999999999999999998765 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchh-------hhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRK-------ALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~-------~~vg~~ 374 (829)
+.+ ..+++.++||+|++.+++ .||+||+.++.. + +.++ +.++++++.+++.+..+ +.+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 754 235667999999998886 599999998631 1 1222 34678888888876543 445543
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcE
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQ 440 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~ 440 (829)
..+||||||||++|||||+++|++|+|||||||||+.++..+.+.++++.+ |+|++++.| ++|+
T Consensus 478 -~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~ 555 (582)
T 3b60_A 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGI 555 (582)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTE
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 358999999999999999999999999999999999999999999999875 899866544 3567
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
++..|+.
T Consensus 556 i~~~g~~ 562 (582)
T 3b60_A 556 IVERGTH 562 (582)
T ss_dssp EEEEECH
T ss_pred EEEecCH
Confidence 7776664
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-35 Score=347.37 Aligned_cols=201 Identities=20% Similarity=0.323 Sum_probs=160.7
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
+..++++|++++|+. +++.+|+|+|+++++||++||+||||||||||+|+|+|..++ .+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~ 405 (587)
T 3qf4_A 339 EGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDEL 405 (587)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSS
T ss_pred CCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCE
Confidence 346999999998841 345799999999999999999999999999999999997765 3799999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGL 373 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~ 373 (829)
++.+ ..+++.++||+|++.+++ .||+||+.++.. ..+++ .+++.++..++.+ -.|+.+|.
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~ 475 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGRE-----DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVER 475 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTCS-----SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECS
T ss_pred EcccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccCC-----CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcC
Confidence 8754 235678999999998875 599999987631 12222 2334444444433 34555665
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCc
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGG 439 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G 439 (829)
. ..+||||||||++|||||+++|++|+||||||+||+.++.++.+.++++. +|+|++++.| ++|
T Consensus 476 ~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G 553 (587)
T 3qf4_A 476 G-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILVLHEG 553 (587)
T ss_dssp S-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTTSSEEEEEETT
T ss_pred C-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHhCCEEEEEECC
Confidence 4 35899999999999999999999999999999999999999999999975 5899865544 478
Q ss_pred EEEEEcCCCC
Q 044554 440 QEIYVGPLGE 449 (829)
Q Consensus 440 ~~vy~G~~~~ 449 (829)
+++..|+.++
T Consensus 554 ~i~~~g~~~e 563 (587)
T 3qf4_A 554 KVAGFGTHKE 563 (587)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999998643
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.4e-34 Score=341.31 Aligned_cols=189 Identities=23% Similarity=0.302 Sum_probs=155.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+++|+. +++.+|+|+|+++++||++||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEE
Confidence 46999999999831 125699999999999999999999999999999999997665 36999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchh-------hhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRK-------ALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~-------~~vg~~ 374 (829)
..+ ..+++.++||+|++.+++ .||+||+.++.. + +.++ +.++++++.+++.+..+ +.+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CCCH----HHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 643 345678999999998886 599999998631 1 1222 34678888888876544 344543
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
...||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++.+ |+|++++.|+
T Consensus 478 -~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~ 538 (582)
T 3b5x_A 478 -GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHR 538 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecC
Confidence 358999999999999999999999999999999999999999999999864 8999776653
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=302.84 Aligned_cols=176 Identities=24% Similarity=0.396 Sum_probs=137.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|. .+++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|
T Consensus 3 ~l~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g--- 66 (237)
T 2cbz_A 3 SITVRNATFTWA-----------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVAIKG--- 66 (237)
T ss_dssp CEEEEEEEEESC-----------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE--EEEEEEECS---
T ss_pred eEEEEEEEEEeC-----------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECC---
Confidence 388999999873 1135799999999999999999999999999999999998764 479999998
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-------hhhhccCCCCCC
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-------RKALVGLPGLNG 378 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~~~~ 378 (829)
.++||+|++. ++.+||+||+.++... ..+. .+++++.+++.+. .++..+. .+..
T Consensus 67 -------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 127 (237)
T 2cbz_A 67 -------SVAYVPQQAW-IQNDSLRENILFGCQL------EEPY----YRSVIQACALLPDLEILPSGDRTEIGE-KGVN 127 (237)
T ss_dssp -------CEEEECSSCC-CCSEEHHHHHHTTSCC------CTTH----HHHHHHHTTCHHHHTTSTTGGGSEEST-TSBC
T ss_pred -------EEEEEcCCCc-CCCcCHHHHhhCcccc------CHHH----HHHHHHHHhhHHHHHhccccccccccC-CCCC
Confidence 2799999976 4689999999986421 1111 2333343333221 1122222 2468
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHH---HHHhCCCeEEEEEec
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVR---NTVDTGRTVLFLLKR 437 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~---~l~~~g~tvllll~~ 437 (829)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+ ++. +|+||+++.|+
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~ 188 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHS 188 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecC
Confidence 99999999999999999999999999999999999999999995 343 48899776653
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-34 Score=342.62 Aligned_cols=188 Identities=26% Similarity=0.389 Sum_probs=150.9
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++++||+++|+ +++.+|+|+|+++++||++||+||||||||||+|+|+|..++ .+|+|.+||.
T Consensus 352 ~~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCE
Confidence 34699999999873 235699999999999999999999999999999999998765 3799999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchh-------hhccC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRK-------ALVGL 373 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~-------~~vg~ 373 (829)
++.+ ..+++.++||+|++.+++ .||+||+.++.. ..+++ .++++++..++.+..+ +.+|.
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EhhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC
Confidence 8754 245678999999998875 699999998631 11222 2455566555544333 33332
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
. ..+||||||||++|||||+.+|++|+||||||+||+.++..+.+.++++. +|+|++++.|+
T Consensus 488 ~-g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~ 549 (598)
T 3qf4_B 488 N-GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHR 549 (598)
T ss_dssp H-HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCC
T ss_pred C-CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 2 24799999999999999999999999999999999999999999999986 58999766553
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.8e-34 Score=362.93 Aligned_cols=203 Identities=27% Similarity=0.405 Sum_probs=166.6
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++|+||+|+|+. ..+..+|+|+|++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.
T Consensus 1074 ~g~I~f~nVsf~Y~~----------~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPE----------RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGS 1141 (1321)
T ss_dssp CCCEEEEEEEECCTT----------SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTE
T ss_pred CCeEEEEEEEEeCCC----------CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECCE
Confidence 347999999999942 1345699999999999999999999999999999999998765 3699999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-------chhhhccC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-------LRKALVGL 373 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~ 373 (829)
++.+ ..+|+.++|||||+.+++ .|+||||.|+.. |.+.+++ .++++++..++.+ -.|+.+|+
T Consensus 1142 di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge 1213 (1321)
T 4f4c_A 1142 EIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGD 1213 (1321)
T ss_dssp ETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETT
T ss_pred EhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCC---CCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecC
Confidence 9865 456889999999998875 699999988632 2334433 3566677666643 35677876
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCc
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGG 439 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G 439 (829)
.| ..||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|++.| ++|
T Consensus 1214 ~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1214 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMNADCIAVVSNG 1291 (1321)
T ss_dssp TS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTTCSEEEEESSS
T ss_pred CC-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHhCCEEEEEECC
Confidence 54 4799999999999999999999999999999999999999999998865 4788854333 479
Q ss_pred EEEEEcCCC
Q 044554 440 QEIYVGPLG 448 (829)
Q Consensus 440 ~~vy~G~~~ 448 (829)
|++.+|+++
T Consensus 1292 ~IvE~Gth~ 1300 (1321)
T 4f4c_A 1292 TIIEKGTHT 1300 (1321)
T ss_dssp SEEEEECHH
T ss_pred EEEEECCHH
Confidence 999999873
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.1e-33 Score=354.27 Aligned_cols=202 Identities=26% Similarity=0.400 Sum_probs=166.3
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++|+||+|+|+. ..++.+|+|+|+++++||.+||+||||||||||+++|.|..++ .+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~----------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPS----------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSS----------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCcEEEEEeeeeCCC----------CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc--ccCcccCCCc
Confidence 346999999999952 2346799999999999999999999999999999999998765 3799999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-------ccchhhhccC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVEL-------NTLRKALVGL 373 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~ 373 (829)
++++ ..+|+.++||+|++.++ +.||+||+.|+. | +.+++ .+.++++..++ .+-.||.+|.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~----~-~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGK----E-GITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTC----T-TCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred cchhccHHHHhhcccccCCcceee-CCchhHHHhhhc----c-cchHH----HHHHHHHHccchhHHHcCCCCCccEecC
Confidence 8765 34677899999999876 579999999873 1 23332 35566665554 3445778887
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCc
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGG 439 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G 439 (829)
.|. .||||||||++||||+++||+|++||||||+||+.+++.+.+.|+++.+ |+|++++.| ++|
T Consensus 551 ~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~i~~aD~Iivl~~G 628 (1321)
T 4f4c_A 551 RGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLSTIRNADLIISCKNG 628 (1321)
T ss_dssp SSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTTTTTCSEEEEEETT
T ss_pred CCC-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHHHHhCCEEEEeeCC
Confidence 654 7999999999999999999999999999999999999999999998764 788854332 579
Q ss_pred EEEEEcCCCC
Q 044554 440 QEIYVGPLGE 449 (829)
Q Consensus 440 ~~vy~G~~~~ 449 (829)
+++..|+.++
T Consensus 629 ~ive~Gth~e 638 (1321)
T 4f4c_A 629 QVVEVGDHRA 638 (1321)
T ss_dssp EEEEEECHHH
T ss_pred eeeccCCHHH
Confidence 9999998643
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.98 E-value=1.6e-32 Score=295.88 Aligned_cols=181 Identities=23% Similarity=0.378 Sum_probs=132.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.. +.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE--EEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECC---
Confidence 58899998731 3589999999999999999999999999999999998764 479999988
Q ss_pred CccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhh-------hccCCCCCC
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKA-------LVGLPGLNG 378 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~-------~vg~~~~~~ 378 (829)
.++|++|++.+++ .||+||+. +. + .... .+++.++.+++.+..+. .++. ....
T Consensus 100 -------~i~~v~Q~~~l~~-~tv~enl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMP-GTIKENII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 159 (290)
T ss_dssp -------CEEEECSSCCCCS-SBHHHHHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCc-ccHHHHhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcC-ccCc
Confidence 3799999988877 49999998 42 1 1111 23445555565543322 2222 2358
Q ss_pred CCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHH-HHHHhCCCeEEEEEe--------------cCcEEEE
Q 044554 379 LSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTV-RNTVDTGRTVLFLLK--------------RGGQEIY 443 (829)
Q Consensus 379 LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l-~~l~~~g~tvllll~--------------~~G~~vy 443 (829)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++.+ +++. +|+||+++.| ++|+++.
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~ 238 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYF 238 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999974 4554 4888865544 3577777
Q ss_pred EcCC
Q 044554 444 VGPL 447 (829)
Q Consensus 444 ~G~~ 447 (829)
.|++
T Consensus 239 ~g~~ 242 (290)
T 2bbs_A 239 YGTF 242 (290)
T ss_dssp EECH
T ss_pred eCCH
Confidence 7765
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=5.2e-32 Score=344.21 Aligned_cols=201 Identities=26% Similarity=0.425 Sum_probs=161.0
Q ss_pred CceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 224 PHSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 224 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
...++++||+++|+. .+++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 385 ~g~i~~~~v~~~y~~----------~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g~ 452 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPS----------RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQ 452 (1284)
T ss_dssp CCCEEEEEEEECCSS----------TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC--SEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC----------CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCE
Confidence 346999999999842 1235799999999999999999999999999999999998765 3799999999
Q ss_pred ecCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-------ccchhhhccC
Q 044554 304 PKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVEL-------NTLRKALVGL 373 (829)
Q Consensus 304 ~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~ 373 (829)
++.. ..+++.+|||+|++.+++. ||+||+.++.. ..+.++ +++.++..++ .+-.|+.+|.
T Consensus 453 ~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~ 522 (1284)
T 3g5u_A 453 DIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDE----IEKAVKEANAYDFIMKLPHQFDTLVGE 522 (1284)
T ss_dssp EGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHH----HHHHHHHTTCHHHHHHSTTGGGCCCSS
T ss_pred EHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhccccccccccC
Confidence 8754 3456779999999988864 99999998742 223322 3333333333 2334666775
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCc
Q 044554 374 PGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGG 439 (829)
Q Consensus 374 ~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G 439 (829)
.+ .+||||||||++|||||+++|+||+||||||+||+.++..+.+.++++. +|+|++++.| ++|
T Consensus 523 ~g-~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G 600 (1284)
T 3g5u_A 523 RG-AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGG 600 (1284)
T ss_dssp SS-CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTTCSEEEECSSS
T ss_pred CC-CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 44 5799999999999999999999999999999999999999999998865 5899865444 479
Q ss_pred EEEEEcCCC
Q 044554 440 QEIYVGPLG 448 (829)
Q Consensus 440 ~~vy~G~~~ 448 (829)
++++.|+.+
T Consensus 601 ~i~~~g~~~ 609 (1284)
T 3g5u_A 601 VIVEQGNHD 609 (1284)
T ss_dssp CCCCEECHH
T ss_pred EEEEECCHH
Confidence 999999864
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=3e-31 Score=337.19 Aligned_cols=201 Identities=24% Similarity=0.385 Sum_probs=158.3
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++||+++|+. ..++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 1029 g~i~~~~v~~~y~~----------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPT----------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSC----------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSC
T ss_pred CcEEEEEEEEECCC----------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 46999999999842 1234699999999999999999999999999999999998765 37999999998
Q ss_pred cCc---cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCC-------ccchhhhccCC
Q 044554 305 KKQ---ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVEL-------NTLRKALVGLP 374 (829)
Q Consensus 305 ~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~~ 374 (829)
+.. ..+++.++||+|++.++ +.||+||+.++... ...+.++ +++.++..++ .+-.|+.+|..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCCC
Confidence 754 23567899999999766 57999999876421 1223322 3333333333 34456777754
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------cCcE
Q 044554 375 GLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------RGGQ 440 (829)
Q Consensus 375 ~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------~~G~ 440 (829)
+ ..||||||||++|||+|+++|+||+|||||||||+.++..+.+.|++. .+|+|++++.| ++|+
T Consensus 1169 G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~~dri~vl~~G~ 1246 (1284)
T 3g5u_A 1169 G-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQNADLIVVIQNGK 1246 (1284)
T ss_dssp S-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGSCSEEEEEETBE
T ss_pred C-CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHcCCEEEEEECCE
Confidence 3 579999999999999999999999999999999999999999999885 45889865444 3677
Q ss_pred EEEEcCC
Q 044554 441 EIYVGPL 447 (829)
Q Consensus 441 ~vy~G~~ 447 (829)
++..|+.
T Consensus 1247 i~~~g~~ 1253 (1284)
T 3g5u_A 1247 VKEHGTH 1253 (1284)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 7777775
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=2e-29 Score=297.11 Aligned_cols=174 Identities=23% Similarity=0.337 Sum_probs=143.0
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|+++.+. + ..|+++|+++++||+++|+||||||||||||+|+|..++. +|+|.+
T Consensus 356 ~~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~---- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKVEW---- 415 (607)
T ss_dssp EEEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BSCCCC----
T ss_pred eEEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEE----
Confidence 4689999988762 2 3689999999999999999999999999999999975542 566654
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
.+.++|++|+....+.+||.|++....... ....+.++++++.+++.+..++.+ ..||||||
T Consensus 416 ------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~ 477 (607)
T 3bk7_A 416 ------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGEL 477 (607)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHH
T ss_pred ------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHH
Confidence 235899999987778899999887531100 011245788999999998888765 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEe
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLK 436 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~ 436 (829)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.||+++.|
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH 530 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 999999999999999999999999999999999999999974 5889855443
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=2.6e-29 Score=292.36 Aligned_cols=177 Identities=23% Similarity=0.311 Sum_probs=145.3
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|+++.+. + ..|+++|+++++||+++|+||||||||||+|+|+|..++ .+|+|.+++
T Consensus 268 ~~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~-- 329 (538)
T 3ozx_A 268 TKMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK-- 329 (538)
T ss_dssp EEEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC--
T ss_pred ceEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC--
Confidence 4588899988772 2 457888999999999999999999999999999997654 268887654
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
+.++|++|+....+.+||+||+.+..... ... ....++++++.+++.+..++.+ ..||||||
T Consensus 330 -------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 391 (538)
T 3ozx_A 330 -------QILSYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGEL 391 (538)
T ss_dssp -------CCEEEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHH
T ss_pred -------eeeEeechhcccccCCCHHHHHHHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHH
Confidence 24789999877667899999998742111 111 1234788999999998888765 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
|||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++++ .|.||+++.|+
T Consensus 392 QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 999999999999999999999999999999999999999975 58898776653
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=3.1e-29 Score=292.30 Aligned_cols=173 Identities=25% Similarity=0.359 Sum_probs=141.8
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..++++|+++.+. + ..|+++|+++++||++||+||||||||||+|+|+|..++. +|+|.+
T Consensus 286 ~~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~---- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKIEW---- 345 (538)
T ss_dssp EEEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BCCCCC----
T ss_pred eEEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEE----
Confidence 4689999998872 2 3689999999999999999999999999999999975542 566654
Q ss_pred cCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 305 KKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
...++|++|+....+.+||.|++........ . ..+.++++++.+++.+..++.+ ..||||||
T Consensus 346 ------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~ 407 (538)
T 1yqt_A 346 ------DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREV-----NELSGGEL 407 (538)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHH
T ss_pred ------CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2358999999877788999998865311110 0 1245788999999988777765 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEE
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLL 435 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll 435 (829)
|||+|||+|+.+|++|+|||||+|||..++..+.+.|+++++ .|.|||++.
T Consensus 408 qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vs 459 (538)
T 1yqt_A 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459 (538)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 999999999999999999999999999999999999999874 588985443
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=2.3e-29 Score=296.59 Aligned_cols=165 Identities=25% Similarity=0.296 Sum_probs=130.5
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEE---------EEcCeecCcc-----ccccceeEEe
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNI---------AISGYPKKQE-----TFTCISGYCE 318 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i---------~i~G~~~~~~-----~~~~~~~yv~ 318 (829)
.+|+|+| ++++||+++|+||||||||||||+|+|...+. +|++ .++|.+.... ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~--~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN--LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC--TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC--CCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4899999 99999999999999999999999999965432 3443 3455443210 1123467888
Q ss_pred cCCCCCC---CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhh
Q 044554 319 QNDIHSP---NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVA 395 (829)
Q Consensus 319 Q~~~~~~---~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~ 395 (829)
|.....+ ..||+|++... .. .++++++++.+||.+..++.++ .|||||||||+||++|+.
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~-------~~-----~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~ 245 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV-------DE-----VGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLR 245 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT-------CC-----SSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHS
T ss_pred chhhhchhhccccHHHHhhhh-------HH-----HHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhc
Confidence 8643222 24999998641 11 1236889999999998888764 799999999999999999
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 396 NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 396 ~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+|++|+|||||+|||+.++..+.+.|++++++|.|||++.|+
T Consensus 246 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd 287 (607)
T 3bk7_A 246 KAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 999999999999999999999999999998889999887764
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=3.9e-29 Score=291.48 Aligned_cols=176 Identities=24% Similarity=0.306 Sum_probs=136.2
Q ss_pred EeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEE---------EE
Q 044554 230 DDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNI---------AI 300 (829)
Q Consensus 230 ~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i---------~i 300 (829)
+||+++|. +...+|+|+| ++++||+++|+||||||||||+|+|+|...+. +|++ .+
T Consensus 25 ~~ls~~yg------------~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~--~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 25 EDCVHRYG------------VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN--LCGDNDSWDGVIRAF 89 (538)
T ss_dssp CCEEEECS------------TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSHHHHHHHT
T ss_pred cCcEEEEC------------CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCccCcchhhhHHhh
Confidence 47888762 1224899999 99999999999999999999999999964431 3443 24
Q ss_pred cCeecCc-----cccccceeEEecCCCCCC---CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhcc
Q 044554 301 SGYPKKQ-----ETFTCISGYCEQNDIHSP---NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVG 372 (829)
Q Consensus 301 ~G~~~~~-----~~~~~~~~yv~Q~~~~~~---~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg 372 (829)
+|.+... ...+..+++++|+....+ ..|+.|++.... . .++++++++.+|+.+..++.+
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-------~-----~~~~~~~l~~lgl~~~~~~~~- 156 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-------E-----TGKLEEVVKALELENVLEREI- 156 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-------S-----SSCHHHHHHHTTCTTTTTSBG-
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-------H-----HHHHHHHHHHcCCChhhhCCh-
Confidence 5544321 011234688888644333 248999885311 0 123788999999998888765
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 373 LPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 373 ~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
..|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|++++++|.|||++.|+
T Consensus 157 ----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd 217 (538)
T 1yqt_A 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217 (538)
T ss_dssp ----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4799999999999999999999999999999999999999999999998889999887764
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=1.9e-28 Score=293.58 Aligned_cols=191 Identities=22% Similarity=0.308 Sum_probs=122.3
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHH---------------------HHHhCCCCC--Cee---EEEEEEcCeec
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLL---------------------DVLAGRKTS--GYI---TGNIAISGYPK 305 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL---------------------~~LaG~~~~--g~~---~G~i~i~G~~~ 305 (829)
+.+|+|||+++++||+++|+||||||||||+ +++.|...+ +.+ .+.+.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4689999999999999999999999999998 677774332 222 35677877654
Q ss_pred CccccccceeEEecCCCC-------------------CCCCCHHHHHHHhhhhcCCCCCCHHHHHH------HHHHHHHH
Q 044554 306 KQETFTCISGYCEQNDIH-------------------SPNVTVYESLLYSAWLRLPPEVDSQTRKM------FIEEVMEL 360 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~-------------------~~~lTV~E~l~f~a~lr~~~~~~~~~~~~------~v~~vl~~ 360 (829)
.. ..++.+++++|...+ ++.+||+||+.+...+..... ..+.... ...++++.
T Consensus 111 ~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 32 223445666664332 356899999987533221111 0000000 11235788
Q ss_pred cCCccc-hhhhccCCCCCCCCHHHHHHHHHHHHhhhCCC--cceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe-
Q 044554 361 VELNTL-RKALVGLPGLNGLSTEKRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK- 436 (829)
Q Consensus 361 l~L~~~-~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~--iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~- 436 (829)
+||.+. .++.+ ..|||||||||+|||||+.+|+ +|+|||||+|||+.++..+++.|++++++|.|||++.|
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 888764 45554 4799999999999999999998 99999999999999999999999999888999955433
Q ss_pred -------------------cCcEEEEEcCCCC
Q 044554 437 -------------------RGGQEIYVGPLGE 449 (829)
Q Consensus 437 -------------------~~G~~vy~G~~~~ 449 (829)
++|++++.|++++
T Consensus 264 ~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 264 EDTMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp HHHHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred HHHHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 5799999998754
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=2e-27 Score=289.38 Aligned_cols=179 Identities=21% Similarity=0.326 Sum_probs=143.7
Q ss_pred ceEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 225 HSITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 225 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
..+...|+++.| +++.+|+|+|+++++||+++|+||||||||||||+|+| | ++ +|.+
T Consensus 434 ~~L~~~~ls~~y-------------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag----G----~i--~g~~ 490 (986)
T 2iw3_A 434 EDLCNCEFSLAY-------------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----G----QV--DGFP 490 (986)
T ss_dssp CEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH----T----CS--TTCC
T ss_pred ceeEEeeEEEEE-------------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC----C----Cc--CCCc
Confidence 457777888887 34679999999999999999999999999999999995 2 11 3433
Q ss_pred cCccccccceeEEecCC-CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhccCCCCCCCCHH
Q 044554 305 KKQETFTCISGYCEQND-IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALVGLPGLNGLSTE 382 (829)
Q Consensus 305 ~~~~~~~~~~~yv~Q~~-~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~vg~~~~~~LSgG 382 (829)
... ...++|++|+. ..++.+||.|++.+ ... .. .++++++++.+|+. +..++.++ .||||
T Consensus 491 ~~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGG 552 (986)
T 2iw3_A 491 TQE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGG 552 (986)
T ss_dssp CTT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHH
T ss_pred ccc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHH
Confidence 221 12368999874 66789999999976 111 11 34588999999994 67777654 79999
Q ss_pred HHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE----------------EEecCcEEE-EEc
Q 044554 383 KRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLF----------------LLKRGGQEI-YVG 445 (829)
Q Consensus 383 erqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvll----------------ll~~~G~~v-y~G 445 (829)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++ .|+|||+ ++ ++|+++ +.|
T Consensus 553 qkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L-~~G~iv~~~G 628 (986)
T 2iw3_A 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINY-EGLKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEE-ETTEEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEE-ECCeeecCCC
Confidence 99999999999999999999999999999999999999988 5888844 34 478986 688
Q ss_pred CCC
Q 044554 446 PLG 448 (829)
Q Consensus 446 ~~~ 448 (829)
+..
T Consensus 629 ~~~ 631 (986)
T 2iw3_A 629 NFT 631 (986)
T ss_dssp CHH
T ss_pred CHH
Confidence 763
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1e-27 Score=282.20 Aligned_cols=174 Identities=20% Similarity=0.236 Sum_probs=139.3
Q ss_pred eeeeeeeEEEEeCC-----eEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCC
Q 044554 252 LVLLNGVSGAFRPG-----VLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPN 326 (829)
Q Consensus 252 ~~iL~~vs~~i~~G-----ei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~ 326 (829)
+.+++|+|+++++| |+++|+||||||||||+|+|+|..++. +|+ ... +..++|++|+......
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~------~~~----~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQ------DIP----KLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCC------CCC----SCCEEEECSSCCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCc------Ccc----CCcEEEecccccccCC
Confidence 46889999999998 789999999999999999999975542 343 111 2358999998776677
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCC
Q 044554 327 VTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPT 406 (829)
Q Consensus 327 lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPT 406 (829)
.||+|++.... + ..... .+.++++++.+++.+..++.+ ..|||||||||+|||+|+.+|++|+|||||
T Consensus 428 ~tv~e~~~~~~--~--~~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 428 GTVRQLFFKKI--R--GQFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp SBHHHHHHHHC--S--STTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred ccHHHHHHHHh--h--ccccc---HHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 89999875432 1 11111 234678999999998888765 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCeEEEEEe----------------c-CcEEEEEcCCCC
Q 044554 407 SGLDARAAAIFMRTVRNTV-DTGRTVLFLLK----------------R-GGQEIYVGPLGE 449 (829)
Q Consensus 407 sGLD~~~~~~i~~~l~~l~-~~g~tvllll~----------------~-~G~~vy~G~~~~ 449 (829)
+|||+.++..+++.|++++ +.|.||+++.| . .|+++..|++.+
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPES 556 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHH
Confidence 9999999999999999986 45899855433 2 378888888865
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=6.8e-27 Score=284.73 Aligned_cols=183 Identities=19% Similarity=0.312 Sum_probs=138.2
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++|+++.|+ .+++.+|+|+|+++++||+++|+||||||||||+|+|+|...+. +|+|.++|.
T Consensus 671 mL~v~nLs~~Y~-----------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~--sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYP-----------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT--SGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECCT-----------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS--EEEEEECTT--
T ss_pred eEEEEeeEEEeC-----------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEcCc--
Confidence 599999999872 12256899999999999999999999999999999999976643 799999862
Q ss_pred CccccccceeEEecCCCC----CCCCCHHHHHHHhhhhc------------CC---------------------------
Q 044554 306 KQETFTCISGYCEQNDIH----SPNVTVYESLLYSAWLR------------LP--------------------------- 342 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~----~~~lTV~E~l~f~a~lr------------~~--------------------------- 342 (829)
..++|++|+..+ ....|++|++.+..... ..
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhh
Confidence 137888887521 12467777775421000 00
Q ss_pred -------------------------CCC--------C--------------------------HHHHHHHHHHHHHHcCC
Q 044554 343 -------------------------PEV--------D--------------------------SQTRKMFIEEVMELVEL 363 (829)
Q Consensus 343 -------------------------~~~--------~--------------------------~~~~~~~v~~vl~~l~L 363 (829)
... + .....+.++++++.+||
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred hhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCC
Confidence 000 0 00012457889999999
Q ss_pred cc-c-hhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 364 NT-L-RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 364 ~~-~-~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
.+ . .+..+ ++||||||||++|||+|+.+|++|+|||||+|||..+...+.+.|+++ +.|||++.|+
T Consensus 890 ~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD 957 (986)
T 2iw3_A 890 DPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHS 957 (986)
T ss_dssp CHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSC
T ss_pred CchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECC
Confidence 75 3 45544 479999999999999999999999999999999999999999888764 6788888764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=2.8e-26 Score=274.81 Aligned_cols=171 Identities=26% Similarity=0.304 Sum_probs=120.0
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC----------CCC-------C--eeEEEEEEcCeecCcccc--
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR----------KTS-------G--YITGNIAISGYPKKQETF-- 310 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~----------~~~-------g--~~~G~i~i~G~~~~~~~~-- 310 (829)
+.+|+|||++|++||++||+||||||||||+|+|.+. ... | ...|.+.++|.+......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 3589999999999999999999999999999876410 000 1 123577777766532100
Q ss_pred ------------------------------------------ccceeEEecCCCCCC-----------------------
Q 044554 311 ------------------------------------------TCISGYCEQNDIHSP----------------------- 325 (829)
Q Consensus 311 ------------------------------------------~~~~~yv~Q~~~~~~----------------------- 325 (829)
.+..|++.|+..+++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 001233333322222
Q ss_pred ---------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCCHHHHHHHHHHHHhhh
Q 044554 326 ---------NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLSTEKRKRLTIAVELVA 395 (829)
Q Consensus 326 ---------~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LSgGerqRlsIa~aL~~ 395 (829)
.+||+||+.+.... . ..++..+.++.+++.. ..+..+ ..|||||||||+|||+|+.
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHHHHHhh
Confidence 57999999875321 1 1234567788888864 234433 4799999999999999999
Q ss_pred CC---CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 396 NP---SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 396 ~p---~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+| ++|+|||||+|||+.++..+++.|++++++|+|||++.|
T Consensus 561 ~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtH 604 (670)
T 3ux8_A 561 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH 604 (670)
T ss_dssp CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 87 499999999999999999999999999988999965443
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.92 E-value=2.3e-26 Score=267.72 Aligned_cols=155 Identities=24% Similarity=0.301 Sum_probs=116.8
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEE-----------EEcCeecCc---------cccccceeEEecCC
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNI-----------AISGYPKKQ---------ETFTCISGYCEQND 321 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i-----------~i~G~~~~~---------~~~~~~~~yv~Q~~ 321 (829)
.++||++||+||||||||||+|+|+|..++. +|++ .++|.+... ........|+.|.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~--~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN--FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC--TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 4699999999999999999999999965432 3555 455554311 00111223333333
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcce
Q 044554 322 IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIF 401 (829)
Q Consensus 322 ~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~ 401 (829)
.+ ...||+|++.... .++.++++++.+++.+..|+.++ .|||||||||+||+||+.+|++|+
T Consensus 100 ~~-~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 KF-LKGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TT-CCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hh-ccCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEE
Confidence 32 2358888764211 01236789999999998888764 799999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 402 MDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 402 LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|||||||||+.++..+.+.|+++++ |+|||++.|+
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHd 196 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHD 196 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSC
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeC
Confidence 9999999999999999999999976 8999877664
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.7e-26 Score=268.90 Aligned_cols=167 Identities=22% Similarity=0.303 Sum_probs=120.2
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEE-----------EcCeecCc---cccccce--eE
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIA-----------ISGYPKKQ---ETFTCIS--GY 316 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~-----------i~G~~~~~---~~~~~~~--~y 316 (829)
..|++++ .+++||++||+||||||||||||+|+|..++. +|+|. +.|..... ....+.+ .+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~--~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC--CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 4677777 68999999999999999999999999965432 35441 22221100 0000111 12
Q ss_pred EecCCCC------CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHH
Q 044554 317 CEQNDIH------SPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIA 390 (829)
Q Consensus 317 v~Q~~~~------~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa 390 (829)
.+|.... .+..++.+.+.... .. ..+.++++++.++|.+..++.+ ..||||||||++||
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIG 233 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHHHH
Confidence 2332111 12235666654321 11 1245789999999999888765 48999999999999
Q ss_pred HHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 391 VELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 391 ~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
++|+.+|++|+|||||||||+.++..+.+.|++++++|+|||++.|+
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 280 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 99999999999999999999999999999999998889999877664
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=3.5e-24 Score=259.02 Aligned_cols=170 Identities=28% Similarity=0.364 Sum_probs=127.7
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh-C---------CCCCC---eeEE------EEEEcCeecCccc-----
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLA-G---------RKTSG---YITG------NIAISGYPKKQET----- 309 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~La-G---------~~~~g---~~~G------~i~i~G~~~~~~~----- 309 (829)
.|+|||++|++||+++|+|+||||||||+++|. | ...+| .+.| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 599999999999999999999999999999864 1 11233 2334 5888888763210
Q ss_pred -----------------cccceeEEecCCCCC----------------------C-------------------------
Q 044554 310 -----------------FTCISGYCEQNDIHS----------------------P------------------------- 325 (829)
Q Consensus 310 -----------------~~~~~~yv~Q~~~~~----------------------~------------------------- 325 (829)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013357777643221 1
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCCHHHHHHHHHHHHhhhCC
Q 044554 326 -------NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLSTEKRKRLTIAVELVANP 397 (829)
Q Consensus 326 -------~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p 397 (829)
.+||.|++.|... .. +.+.+.++++.++|.. ..+..+ ..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~---~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IP---KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CH---HHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------ch---hHHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCC
Confidence 4678888876432 11 1223578899999986 455543 479999999999999999865
Q ss_pred ---CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 398 ---SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 398 ---~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
++|+|||||+|||+.+...+++.|++++++|.|||++.|+
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHd 907 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 9999999999999999999999999999889999777653
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=7e-24 Score=256.18 Aligned_cols=169 Identities=26% Similarity=0.364 Sum_probs=121.0
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHH-HhCC---------CCCC--------------eeEE-------EEEEcC
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDV-LAGR---------KTSG--------------YITG-------NIAISG 302 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~-LaG~---------~~~g--------------~~~G-------~i~i~G 302 (829)
.|+|||++|++||++||+|+||||||||++. |+|. +.+| ...| .+.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 5999999999999999999999999999996 7642 1111 2356 789998
Q ss_pred eecCcccc-------------c---------cceeEEec----------------------CCCCCC-------------
Q 044554 303 YPKKQETF-------------T---------CISGYCEQ----------------------NDIHSP------------- 325 (829)
Q Consensus 303 ~~~~~~~~-------------~---------~~~~yv~Q----------------------~~~~~~------------- 325 (829)
.++..... + |..||.++ +-.+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 87642110 0 11122211 111111
Q ss_pred -------------------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccc-hhhhccCCCCCCCCHHHHH
Q 044554 326 -------------------NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTL-RKALVGLPGLNGLSTEKRK 385 (829)
Q Consensus 326 -------------------~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~~LSgGerq 385 (829)
.+|+.|++.|.. . . .+.++++++++.++|... .+..+ ..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~--~~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-E--SAIFRALDTLREVGLGYLRLGQPA-----TELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-S--HHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-c--hHHHHHHHHHHHcCCCcccccCCc-----ccCCHHHHH
Confidence 235555554421 1 1 123457899999999863 34433 479999999
Q ss_pred HHHHHHHhhhC---CCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 386 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 386 RlsIa~aL~~~---p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
||.||++|+.+ |++|+|||||+|||..+...+.+.|++++++|.|||++.|
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisH 791 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEH 791 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 99999999996 6999999999999999999999999999988999976554
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=1.2e-23 Score=256.02 Aligned_cols=183 Identities=27% Similarity=0.398 Sum_probs=132.3
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHH---------HHHhCCC-CCC---eeE------EEEEEcCeecCccc----
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLL---------DVLAGRK-TSG---YIT------GNIAISGYPKKQET---- 309 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL---------~~LaG~~-~~g---~~~------G~i~i~G~~~~~~~---- 309 (829)
..|+|||+++++|++++|+|+||||||||+ +.+.+.. ..| .+. +.+.+++.+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 469999999999999999999999999997 4454421 111 122 33555554432100
Q ss_pred ----------------------------------------cccceeEEecCCCCCC------------------------
Q 044554 310 ----------------------------------------FTCISGYCEQNDIHSP------------------------ 325 (829)
Q Consensus 310 ----------------------------------------~~~~~~yv~Q~~~~~~------------------------ 325 (829)
-.+..|++.|+..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012477777765554
Q ss_pred --------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCC
Q 044554 326 --------NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANP 397 (829)
Q Consensus 326 --------~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p 397 (829)
.+||.|++.|... . ...+++.++++.+||.... .|.+ ...|||||||||.|||+|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCC
Confidence 3788888887532 1 1234567889999996532 2222 3589999999999999999875
Q ss_pred ---CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe--------------------cCcEEEEEcCCC
Q 044554 398 ---SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK--------------------RGGQEIYVGPLG 448 (829)
Q Consensus 398 ---~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~--------------------~~G~~vy~G~~~ 448 (829)
++|+|||||+|||+.+...+++.|++++++|.|||++.| ++|+++..|+++
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 699999999999999999999999999988999955433 468888888763
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.90 E-value=1.1e-23 Score=255.54 Aligned_cols=168 Identities=26% Similarity=0.372 Sum_probs=122.6
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh-C----C-----CCCCe---eEE------EEEEcCeecCccc-----
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLA-G----R-----KTSGY---ITG------NIAISGYPKKQET----- 309 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~La-G----~-----~~~g~---~~G------~i~i~G~~~~~~~----- 309 (829)
.|+|||++|++||+++|+|+||||||||+++|. | . ..+|. +.| .+.+++.++....
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 599999999999999999999999999999863 2 1 12332 123 3666766652110
Q ss_pred -----------------cccceeEEecCCCC----------------------CC-------------------------
Q 044554 310 -----------------FTCISGYCEQNDIH----------------------SP------------------------- 325 (829)
Q Consensus 310 -----------------~~~~~~yv~Q~~~~----------------------~~------------------------- 325 (829)
..+..||++|...+ ++
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 01234666664221 11
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCCHHHHHHHHHHHHhhhCC
Q 044554 326 -------NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLSTEKRKRLTIAVELVANP 397 (829)
Q Consensus 326 -------~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p 397 (829)
.+||.|++.|... .+. .+.+.++++.++|.. ..+..+ ..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------IAG---VHRYLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------CHH---HHHHHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------chH---HHHHHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhCC
Confidence 3577888876432 111 223578899999976 445443 479999999999999999865
Q ss_pred ---CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEE
Q 044554 398 ---SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLL 435 (829)
Q Consensus 398 ---~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll 435 (829)
++|+|||||+|||+.+...+.+.|++++++|.|||++.
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 99999999999999999999999999998899996543
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.5e-25 Score=251.26 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=121.9
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEE-E-EEEcCeecCccccccceeEEecCCC---CCCCCCHH
Q 044554 256 NGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITG-N-IAISGYPKKQETFTCISGYCEQNDI---HSPNVTVY 330 (829)
Q Consensus 256 ~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G-~-i~i~G~~~~~~~~~~~~~yv~Q~~~---~~~~lTV~ 330 (829)
+++|+++++|++++|+||||||||||+|+|+|...+ .+| + |.++|. .++.++|++|+.. +.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 478999999999999999999999999999997653 368 8 999983 2456899999874 45568999
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHH--hhhCCCc----ceecC
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVE--LVANPSI----IFMDE 404 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~a--L~~~p~i----L~LDE 404 (829)
||+ |+....... .. .+.++++++.+|+.+..+ ...||||||||++|||+ |+.+|++ |+|||
T Consensus 201 eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 999 764321111 10 122456778888887665 24799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 405 -PTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 405 -PTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
||+|||+. ...+.+.+++ .++|+++++|+
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~ 297 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCS 297 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECC
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEcc
Confidence 99999999 5555555544 36777777764
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.87 E-value=2.7e-22 Score=226.50 Aligned_cols=182 Identities=18% Similarity=0.148 Sum_probs=123.2
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-----------------C-------------------eeEE
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS-----------------G-------------------YITG 296 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~-----------------g-------------------~~~G 296 (829)
.+++++|+++++| +++|+|||||||||||++|++.... + .-.|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 9999999999999999999663210 0 0157
Q ss_pred EEEEcCeecCccc---c-ccceeEEecCCCCCCCCCHHHHHHHhhhhc-----------------------CCCCCC---
Q 044554 297 NIAISGYPKKQET---F-TCISGYCEQNDIHSPNVTVYESLLYSAWLR-----------------------LPPEVD--- 346 (829)
Q Consensus 297 ~i~i~G~~~~~~~---~-~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr-----------------------~~~~~~--- 346 (829)
++.+||.+..... . +..+++++|++.+.. .+..+...|--... +.....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999999876422 2 234789999876653 24544443321100 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCccch----------------hh---hccCC--
Q 044554 347 -------------------------------SQTRKMFIEEVMELVELNTLR----------------KA---LVGLP-- 374 (829)
Q Consensus 347 -------------------------------~~~~~~~v~~vl~~l~L~~~~----------------~~---~vg~~-- 374 (829)
.+.-.+.+++.++.+++.+.. +. ..+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344555666554310 00 11100
Q ss_pred ----CCCC-CCHHHHHHHHHHHHhhhCC--CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 375 ----GLNG-LSTEKRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 375 ----~~~~-LSgGerqRlsIa~aL~~~p--~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
..+. +|||||||++||++|+.+| ++|+|||||+|||+.++..+.+.|++++ +|.||+++.|+
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~ 355 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHL 355 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSC
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCc
Confidence 0111 7999999999999999999 9999999999999999999999999998 58999998764
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=8.8e-25 Score=224.51 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=98.3
Q ss_pred CCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC-CCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCC
Q 044554 249 EDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNV 327 (829)
Q Consensus 249 ~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~-~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~l 327 (829)
.+++.+|+|+ ++||+++|+||||||||||+|+|+|. ++.|.+.+. .+. .+ ....++.+||++|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~-~~~-~~--~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRI-ILT-RP--AVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEE-EEE-EC--SCCTTCCCCSSCC--------
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeE-Eec-CC--chhhhcceEEecCCH------
Confidence 3456799996 99999999999999999999999997 223444331 111 11 123456799999975
Q ss_pred CHHHHH-HHhhhh--cCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecC
Q 044554 328 TVYESL-LYSAWL--RLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDE 404 (829)
Q Consensus 328 TV~E~l-~f~a~l--r~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDE 404 (829)
+||+ .+.... ......+ .+.++++++. + + |||||++|||+|+.+|++|+|||
T Consensus 76 --~enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 --NEKIDPYLRPLHDALRDMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ------CTTTHHHHHHHTTTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred --HHHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 5555 332100 0000001 1224444443 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecC
Q 044554 405 PTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKRG 438 (829)
Q Consensus 405 PTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~~ 438 (829)
||+| ++..+.+.|+++ ++|+||+ +.|+-
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~ 158 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDI 158 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC-
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCH
Confidence 9999 888999999988 6789998 88753
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.85 E-value=8.7e-23 Score=202.98 Aligned_cols=141 Identities=15% Similarity=0.223 Sum_probs=98.6
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCC-CCCCHHHHHHH
Q 044554 257 GVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHS-PNVTVYESLLY 335 (829)
Q Consensus 257 ~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~-~~lTV~E~l~f 335 (829)
|||+++++||+++|+||||||||||+|++.+-.. .+++ . ...++++|+.... ...++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 1 1226677764211 0011111111
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHH---
Q 044554 336 SAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 412 (829)
Q Consensus 336 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~--- 412 (829)
...+. ....+.....+.. ...|||||||++||++++.+|++++|||||+|||+.
T Consensus 64 ----------------~~~~~-~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVSK-RLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHHH-HHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHHH-HHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11111 2223444333321 346999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 413 -------------AAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 413 -------------~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
...++.+.+++++++|.|++++.|+
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~ 158 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNS 158 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECS
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCC
Confidence 5689999999988789999999875
No 68
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.81 E-value=1.5e-22 Score=227.62 Aligned_cols=146 Identities=15% Similarity=0.170 Sum_probs=118.7
Q ss_pred eeeeeeeEEEEeCCe--------------------EEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccc
Q 044554 252 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFT 311 (829)
Q Consensus 252 ~~iL~~vs~~i~~Ge--------------------i~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~ 311 (829)
+.+|+|||+++++|+ ++||+||||||||||+|+|+|..++. +|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~--~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE--EGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS--TTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc--CceEEECCeecc-----
Confidence 468999999999999 99999999999999999999976542 577888886542
Q ss_pred cceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH--HHHHHHH
Q 044554 312 CISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE--KRKRLTI 389 (829)
Q Consensus 312 ~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG--erqRlsI 389 (829)
+ .++++|++ .++.+|+.|++.++.. +..+++.++.+++.+..... .+|+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 5678999998765421 11367888999887653322 28999 9999999
Q ss_pred HHHhhh----------CCCcceecCCCCCCCHHHHHHHHHHHHHHH
Q 044554 390 AVELVA----------NPSIIFMDEPTSGLDARAAAIFMRTVRNTV 425 (829)
Q Consensus 390 a~aL~~----------~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~ 425 (829)
|++|+. +|++++|||||+|||+.++.++.+.++++.
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999999999985
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.81 E-value=2.9e-20 Score=203.40 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHHhh----hCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~----~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.++++. +|.+++++.|+
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~ 281 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHN 281 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCC
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECC
Confidence 579999999999999997 5789999999999999999999999999985 47888888764
No 70
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.80 E-value=5.3e-19 Score=196.74 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHhh------hCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~------~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+..||||||||++||++|+ .+|++|+|||||+|||+.++..+++.|+++.++|+||+++.|+
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~ 344 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHD 344 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESC
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 3579999999999999999 7999999999999999999999999999998889999998874
No 71
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.80 E-value=1e-21 Score=209.64 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVD 346 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~ 346 (829)
.++|+||||||||||+|+|+|...+ .+|++.++|.+......++.++|++|++.+.+.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 4799999999999999999996543 369999999877554556779999999999999999999988754321 111
Q ss_pred HHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh
Q 044554 347 SQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD 426 (829)
Q Consensus 347 ~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~ 426 (829)
. +.+++.++ .+..+...+ .||||||||+++||+++. ++++||||+|||+.. .+.++++.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12333332 344555543 699999999999999886 999999999999987 455666666
Q ss_pred CCCeEEEEEec
Q 044554 427 TGRTVLFLLKR 437 (829)
Q Consensus 427 ~g~tvllll~~ 437 (829)
. .++++++++
T Consensus 140 ~-~~vI~Vi~K 149 (270)
T 3sop_A 140 V-VNIIPVIAK 149 (270)
T ss_dssp T-SEEEEEETT
T ss_pred c-CcEEEEEec
Confidence 5 888888865
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.79 E-value=9.5e-21 Score=189.80 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=87.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVD 346 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~ 346 (829)
.++|+||||||||||+|+|+|.... .+.|... .+......++.+||++|+. ++.+++ ++ .+.. +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~~----~ 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SKFF----T 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ETTC----C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hhcC----C
Confidence 5899999999999999999996531 1223211 1111012346789999975 233333 11 1100 0
Q ss_pred HHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHH-----hhhCCCcceecC--CCCCCCHHHHHHHHH
Q 044554 347 SQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAIFMR 419 (829)
Q Consensus 347 ~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~a-----L~~~p~iL~LDE--PTsGLD~~~~~~i~~ 419 (829)
. .+..+.. +..||||||||++||++ |+.+|++++||| ||++||+.....+.+
T Consensus 66 ~----------------~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 66 S----------------KKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp C----------------SSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred c----------------ccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 0 0122222 24799999999999996 999999999999 999999999999988
Q ss_pred HHHHHHhCCCeEEEEEe
Q 044554 420 TVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 420 ~l~~l~~~g~tvllll~ 436 (829)
.+++ .+.|++++.|
T Consensus 125 ~l~~---~~~~~i~~~H 138 (178)
T 1ye8_A 125 IMHD---PNVNVVATIP 138 (178)
T ss_dssp HHTC---TTSEEEEECC
T ss_pred HHhc---CCCeEEEEEc
Confidence 8865 4677888876
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=9.8e-21 Score=205.18 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=120.7
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc-------cc--ccceeEEecCCC-CC
Q 044554 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE-------TF--TCISGYCEQNDI-HS 324 (829)
Q Consensus 255 L~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~-------~~--~~~~~yv~Q~~~-~~ 324 (829)
++++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 4578889999999999999999999999999996432 148899999876431 12 246899999988 88
Q ss_pred CCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCC--ccee
Q 044554 325 PNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPS--IIFM 402 (829)
Q Consensus 325 ~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~--iL~L 402 (829)
+.+||+|++.++.. + ..+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~---~~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T---TCS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c---CCc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 89999999987642 1 111 235667788777776654 688 999999999999999 9999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEecCc
Q 044554 403 DEPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKRGG 439 (829)
Q Consensus 403 DEPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~~G 439 (829)
| ||+|||+.+. ++++.+ .|.|++++.|-+|
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~ 258 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDG 258 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCC
Confidence 9 9999999754 345553 5899999987554
No 74
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.77 E-value=1.5e-21 Score=199.73 Aligned_cols=167 Identities=14% Similarity=0.076 Sum_probs=108.1
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCH
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
+.+.+++| .++++||+++|+||||||||||+|+|+|..+. +.+.+.+.+.+.. ...++.++|++|+...++.+|+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCc-ccccCCCeeEecCHHHHHHHHh
Confidence 44668888 79999999999999999999999999996542 3333333333221 1234568999999887888888
Q ss_pred HHHHHHhhhhcC---CCCCCHHHHHHHHHHH------HHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcc
Q 044554 330 YESLLYSAWLRL---PPEVDSQTRKMFIEEV------MELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSII 400 (829)
Q Consensus 330 ~E~l~f~a~lr~---~~~~~~~~~~~~v~~v------l~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL 400 (829)
.|++........ ....++++.++++++. ++.+|+.+.++... +.|| +|+.+|+++
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~ 145 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQ 145 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHH
Confidence 887643211000 0012333444455555 55556655555543 3577 899999999
Q ss_pred eecCCCCCC----CHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 401 FMDEPTSGL----DARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 401 ~LDEPTsGL----D~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
+|||||+|+ |+..+..+.+.++++.+ .|.|++++.|+
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHd 187 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR 187 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCC
Confidence 999999998 78899999999999975 58999988763
No 75
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.76 E-value=5.6e-22 Score=205.04 Aligned_cols=152 Identities=12% Similarity=-0.001 Sum_probs=98.2
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc----cccccceeEEecCCCCCCCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ----ETFTCISGYCEQNDIHSPNV 327 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~----~~~~~~~~yv~Q~~~~~~~l 327 (829)
..-|+|||+++++|++++|+||||||||||+|+|+|.. + |++.+ |.+... ...++.++|++|++..++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 45799999999999999999999999999999999966 3 55666 554321 12345689999987655433
Q ss_pred CH-HHHHHH---hhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHH-----HHHhhhCCC
Q 044554 328 TV-YESLLY---SAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTI-----AVELVANPS 398 (829)
Q Consensus 328 TV-~E~l~f---~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsI-----a~aL~~~p~ 398 (829)
+. .+++.+ ..... ..+. +.++++++...+. ..+ ..+|||||||++| +++++.+|+
T Consensus 84 ~~~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp HHTTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred hhccchhhhhhcccccC---CCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 21 111111 11100 0111 2356666654432 111 2699999999999 899999999
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHHHH
Q 044554 399 IIFMDEPTSGLDARAAAIFMRTVRNTV 425 (829)
Q Consensus 399 iL~LDEPTsGLD~~~~~~i~~~l~~l~ 425 (829)
+++|||||+++|..+...+.+.+++..
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999998888764
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.75 E-value=6e-20 Score=202.97 Aligned_cols=155 Identities=18% Similarity=0.188 Sum_probs=121.8
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc-------cc--ccceeEEecCCC-CCC
Q 044554 256 NGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE-------TF--TCISGYCEQNDI-HSP 325 (829)
Q Consensus 256 ~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~-------~~--~~~~~yv~Q~~~-~~~ 325 (829)
+++|+++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+..+. .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 467888999999999999999999999999996432 148899999876431 11 346899999988 888
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCC--cceec
Q 044554 326 NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPS--IIFMD 403 (829)
Q Consensus 326 ~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~--iL~LD 403 (829)
..|++|++.++... ..+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~----~~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHT----TCS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhC----CCH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 99999999886421 111 135667788777776654 688 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEecCc
Q 044554 404 EPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKRGG 439 (829)
Q Consensus 404 EPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~~G 439 (829)
||+|||+.+.. +++.+ .|.|++++.|-+|
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~ 315 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDG 315 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTT
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcc
Confidence 99999998653 44443 4899999998654
No 77
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.74 E-value=2.3e-22 Score=217.39 Aligned_cols=165 Identities=13% Similarity=0.169 Sum_probs=116.4
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++++||++.|. +.+|+|+|+++++|++++|+||||||||||+++|+|.. . |+|
T Consensus 101 ~i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~----G~I------- 154 (305)
T 2v9p_A 101 FFNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-G----GSV------- 154 (305)
T ss_dssp HHHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-T----CEE-------
T ss_pred eEEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-C----ceE-------
Confidence 378888888761 45899999999999999999999999999999999976 3 555
Q ss_pred CccccccceeEEecCCCCCCCCCHHH-HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHH
Q 044554 306 KQETFTCISGYCEQNDIHSPNVTVYE-SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKR 384 (829)
Q Consensus 306 ~~~~~~~~~~yv~Q~~~~~~~lTV~E-~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGer 384 (829)
++|++|++.+++ .|++| |+.+.. ..+. .+++.++.+ |.+..| | ..||||||
T Consensus 155 --------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqk 206 (305)
T 2v9p_A 155 --------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRK 206 (305)
T ss_dssp --------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCS
T ss_pred --------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHH
Confidence 356778776655 57886 776642 1111 234555543 333333 2 47999999
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeE-----EEEEecCcEEEEEcCCCCCchhhHHHHh
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTV-----LFLLKRGGQEIYVGPLGEHSSHLIKYFE 459 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tv-----llll~~~G~~vy~G~~~~~~~~~~~~f~ 459 (829)
|| ||+|+.+|+||+ ||+||+.++..+.. +.+.-.++ + ++ ++|++++.|+. +++...|.
T Consensus 207 QR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----ltH~~~~~~~aD~i-vl-~~G~iv~~g~~----~el~~~y~ 269 (305)
T 2v9p_A 207 HK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----LHSRVQTFRFEQPC-TD-ESGEQPFNITD----ADWKSFFV 269 (305)
T ss_dssp SC---CCCEECCCCEEE----EESSCSTTCGGGGG----GTTTEEEEECCCCC-CC-C---CCCCCCH----HHHHHHHH
T ss_pred HH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----HhCCHHHHHhCCEE-EE-eCCEEEEeCCH----HHHHHHHH
Confidence 99 999999999999 99999999988863 22211111 4 44 67999988886 34455565
Q ss_pred cC
Q 044554 460 GI 461 (829)
Q Consensus 460 ~~ 461 (829)
.+
T Consensus 270 ~l 271 (305)
T 2v9p_A 270 RL 271 (305)
T ss_dssp HS
T ss_pred HH
Confidence 54
No 78
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.70 E-value=1.8e-19 Score=196.19 Aligned_cols=123 Identities=12% Similarity=0.032 Sum_probs=94.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcC
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRL 341 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~ 341 (829)
+++|+++||+||||||||||+++|+|...+. +|. +.+++|+|++.+++. |++||+.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 7999999999999999999999999964321 111 347999999998887 999998653211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCH
Q 044554 342 PPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA 411 (829)
Q Consensus 342 ~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~ 411 (829)
..+.....+.+.+.++.++ .+..+..+ ..||||||||+++|++++.+|+|||+|||++.+|+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1122222345677888777 44444433 37999999999999999999999999999999985
No 79
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.67 E-value=3.2e-16 Score=172.55 Aligned_cols=62 Identities=24% Similarity=0.341 Sum_probs=56.2
Q ss_pred CCCCCHHHHH------HHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerq------RlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
++.||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.||+++.|+
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~ 313 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 313 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 3579999999 6778888889999999999999999999999999999998788899888764
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.66 E-value=1.9e-17 Score=181.63 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=89.2
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc-ccccceeEEecCCCCCCCCCHHHH
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE-TFTCISGYCEQNDIHSPNVTVYES 332 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~-~~~~~~~yv~Q~~~~~~~lTV~E~ 332 (829)
+++++|+.+++|++++|+||||||||||+|+|+|..++. +|.|.++|.+.-.. ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeeccccccchhEEEEEe--------------
Confidence 799999999999999999999999999999999976542 68999988642110 0122222221
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHH
Q 044554 333 LLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412 (829)
Q Consensus 333 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~ 412 (829)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEecC
Q 044554 413 AAAIFMRTVRNTVDTGRTVLFLLKRG 438 (829)
Q Consensus 413 ~~~~i~~~l~~l~~~g~tvllll~~~ 438 (829)
.++.+.|+.+...+.|+++.+|+.
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAG 275 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECS
T ss_pred --HHHHHHHHHHhcCCCEEEEEEccc
Confidence 235667777664445788888863
No 81
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.66 E-value=3.5e-18 Score=179.45 Aligned_cols=154 Identities=8% Similarity=-0.023 Sum_probs=94.3
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCH
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
+++.+|+|+|+++++|+++||+||||||||||+++|+|.. | .+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l--G----~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL--G----QNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH--T----GGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh--c----hhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999853 1 11122 2356689999986 6678999
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCC
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGL 409 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGL 409 (829)
.|++.+....... ..+.....+.+.+.++.+ .+..+..+ ..+|+||+||+.+ ++++.+|+++++|||....
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 9998775432110 001111112233444432 23333332 4799999999988 5788899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 410 DARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 410 D~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
|.. ++++ .+.+|++..|
T Consensus 147 ~~~--------l~~~--~~~~i~v~th 163 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTD 163 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECC
T ss_pred cHH--------HHHh--cCeEEEEECC
Confidence 764 2222 2567666654
No 82
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.65 E-value=1.3e-15 Score=184.14 Aligned_cols=88 Identities=25% Similarity=0.429 Sum_probs=75.9
Q ss_pred HHHHcCCccc-hhhhccCCCCCCCCHHHHHHHHHHHHhhhCC--CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 044554 357 VMELVELNTL-RKALVGLPGLNGLSTEKRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLF 433 (829)
Q Consensus 357 vl~~l~L~~~-~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p--~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvll 433 (829)
.++.+||.++ .++.+ ..|||||||||.||++|..+| .+++|||||+|||+.....+.+.|+++++.|.|||+
T Consensus 362 ~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIv 436 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFV 436 (842)
T ss_dssp HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4677888765 55554 479999999999999999999 499999999999999999999999999988999954
Q ss_pred ---------------EEe-----cCcEEEEEcCCCC
Q 044554 434 ---------------LLK-----RGGQEIYVGPLGE 449 (829)
Q Consensus 434 ---------------ll~-----~~G~~vy~G~~~~ 449 (829)
.+. ++|++++.|++++
T Consensus 437 VeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~ 472 (842)
T 2vf7_A 437 VEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEG 472 (842)
T ss_dssp ECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred EcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHH
Confidence 442 5899999999865
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.62 E-value=7.7e-16 Score=170.29 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHhh---------hCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 378 GLSTEKRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~---------~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.+|||||||++||++|+ .+|+||+|||||++||+..+..+++.++++. +|+++..|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th 329 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE 329 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe
Confidence 59999999999999999 8999999999999999999999999998863 56655443
No 84
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.61 E-value=2.9e-17 Score=186.50 Aligned_cols=141 Identities=15% Similarity=0.094 Sum_probs=108.2
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe---ecCc--------cccccceeEEec
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY---PKKQ--------ETFTCISGYCEQ 319 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~---~~~~--------~~~~~~~~yv~Q 319 (829)
+..+|+++ +.+.+||+++|+||||||||||+++|+|..++. .|.+.++|. +... ...++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~--~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD--VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 35699999 999999999999999999999999999976543 699999998 3321 124567899999
Q ss_pred C-CCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCC
Q 044554 320 N-DIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPS 398 (829)
Q Consensus 320 ~-~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~ 398 (829)
+ +..++.+||.||+.+.+....... +++ ....|. ...+|+|| ||++|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~~~----------~~v------~~~ld~------l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRDRG----------QHV------LLIMDS------LTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTT----------CEE------EEEEEC------HHHHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCC----------CCH------HHHHHh------HHHHHHHH-HHHHHH---hCCCc
Confidence 5 556678899999987654210000 001 111121 23699999 999999 88888
Q ss_pred cceecCCCCCCCHHHHHHHHHHHHHHHh
Q 044554 399 IIFMDEPTSGLDARAAAIFMRTVRNTVD 426 (829)
Q Consensus 399 iL~LDEPTsGLD~~~~~~i~~~l~~l~~ 426 (829)
+ |+|||+.+...+.++++++.+
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~ 296 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGN 296 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSC
T ss_pred c------cccCCHHHHHHHHHHHHHHHh
Confidence 8 999999999999999999876
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.61 E-value=7.2e-17 Score=173.93 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=103.7
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEE-EEEEcCeecCccccccceeEEecCCCCCCCCCHH
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITG-NIAISGYPKKQETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G-~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
..+|+++++.+++|++++|+||||||||||++.|+|...+. .| .+.+.+........++++..+.|+.. +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 45799999999999999999999999999999999953211 23 45443322222222233333333321 2333
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH-HHHHHHHHHhhhCCCcceecCCCC--
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK-RKRLTIAVELVANPSIIFMDEPTS-- 407 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe-rqRlsIa~aL~~~p~iL~LDEPTs-- 407 (829)
+++.... .+.++..+.++++++..++. +.+. +..+|.+| +||+. |+++..+|+++++||||+
T Consensus 96 ~~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-------IENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-------HHHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-------CCHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4443321 11222333445554432321 1111 13589998 67776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 408 -G---LDA-RAAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 408 -G---LD~-~~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
+ +|. .....+++.|++++++ |.||+++.|.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~ 196 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 5 555 6778899999999865 8999998875
No 86
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.58 E-value=1.9e-17 Score=169.15 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=107.5
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCC--CCCCHHHHHHHhhhh
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHS--PNVTVYESLLYSAWL 339 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~--~~lTV~E~l~f~a~l 339 (829)
.++|++++|+||||||||||+++|+|...+ .++|++|++.+. ..+|++|+..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999996421 368999998776 5689999876542
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH----HHHHHHHHHhhhCCCcceecCCCCC-------
Q 044554 340 RLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK----RKRLTIAVELVANPSIIFMDEPTSG------- 408 (829)
Q Consensus 340 r~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe----rqRlsIa~aL~~~p~iL~LDEPTsG------- 408 (829)
..+...+ .+.+.+.++.+++.+..+.. ...+|+|| +||++++++++.+|+++++||||++
T Consensus 60 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAFD----LALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGBC----HHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhhh----HHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111122 23456677777776554432 23688886 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCeEEEEEe
Q 044554 409 LDARAAAIFMRTVRNT-VDTGRTVLFLLK 436 (829)
Q Consensus 409 LD~~~~~~i~~~l~~l-~~~g~tvllll~ 436 (829)
||+.....+.+.+++. .+.|+|++.+.|
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999875 455777765544
No 87
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.56 E-value=2.4e-16 Score=170.79 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=104.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccc-------c--ccceeEEecCCCCCCCCCHHHHHH
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQET-------F--TCISGYCEQNDIHSPNVTVYESLL 334 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~-------~--~~~~~yv~Q~~~~~~~lTV~E~l~ 334 (829)
+|++++|+||||||||||++.|+|...+. .|+|.++|.+..... + ++.+++++|+....|..||+|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 69999999999999999999999964432 488999998764211 1 345899999998888899999998
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHH
Q 044554 335 YSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAA 414 (829)
Q Consensus 335 f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~ 414 (829)
++.... .+ ..+++..|+.+..+.. ++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~d--------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----YD--------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----CS--------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----CC--------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 653210 00 0122333443333222 355669999999999999994433 4555555
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEecCc
Q 044554 415 AIFMRTVRNTVDT-GRTVLFLLKRGG 439 (829)
Q Consensus 415 ~~i~~~l~~l~~~-g~tvllll~~~G 439 (829)
.++++.++++.+. |.|++++.|.++
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5666777777654 899999998765
No 88
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.56 E-value=3.3e-17 Score=177.54 Aligned_cols=144 Identities=15% Similarity=0.082 Sum_probs=75.9
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC-CCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR-KTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVT 328 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~-~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 328 (829)
+++.+++++++.+ +|+|+||||||||+|.|+|. ..+ .+| +.++|.+.......+.+++++|++.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~--~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP--ERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC--CCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 4567999999998 99999999999999999995 332 256 7777766432212345789999888888899
Q ss_pred HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCC-
Q 044554 329 VYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTS- 407 (829)
Q Consensus 329 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTs- 407 (829)
|.|+.-++..... .+.....++.+. +..+..+ +++|||||||+.+||+++ ++++||||+
T Consensus 80 v~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAINC-----RDCFKTIISYID------EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 9998877543210 000011122221 2233433 379999999999988885 999999998
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 044554 408 GLDARAAAIFMRTVRNTVD 426 (829)
Q Consensus 408 GLD~~~~~~i~~~l~~l~~ 426 (829)
|||+... +.++++.+
T Consensus 140 ~Ld~~~~----~~l~~l~~ 154 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHN 154 (301)
T ss_dssp SCCHHHH----HHHHHHTT
T ss_pred CCCHHHH----HHHHHHHh
Confidence 5999873 56666654
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.56 E-value=5.7e-16 Score=191.83 Aligned_cols=147 Identities=17% Similarity=0.157 Sum_probs=103.0
Q ss_pred eEEEEe-----eEEEEeCCccccCCCCCCCceeeeeeeEEEEeC-------CeEEEEEcCCCCCHHHHHHHHhCCCCCCe
Q 044554 226 SITFDD-----ITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLLDVLAGRKTSGY 293 (829)
Q Consensus 226 ~l~~~~-----ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Gei~al~G~sGaGKTTLL~~LaG~~~~g~ 293 (829)
.+.++| |++.+. +++.+++|+++.+++ |++++|+||||||||||||++ |....
T Consensus 750 ~l~i~~~rHP~l~~~~~------------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF------------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-- 814 (1022)
T ss_dssp CEEEEEECCCC------------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--
T ss_pred eEEEEeccccEEEEEec------------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--
Confidence 488888 776552 235799999999987 999999999999999999999 85421
Q ss_pred eEEEEEEcCeecCcccccccee-EEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhcc
Q 044554 294 ITGNIAISGYPKKQETFTCISG-YCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVG 372 (829)
Q Consensus 294 ~~G~i~i~G~~~~~~~~~~~~~-yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg 372 (829)
...+| ||||+.. .+||.|++.. + +|+.+..+.
T Consensus 815 -----------------~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~--- 847 (1022)
T 2o8b_B 815 -----------------MAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS--- 847 (1022)
T ss_dssp -----------------HHTTTCCEESSEE---EECCCSBEEE----E--------------------CC----------
T ss_pred -----------------HhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh---
Confidence 12345 9999753 4566655421 1 111111111
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHH-HHHHHHHHHHHhC-CCeEEEEEec
Q 044554 373 LPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAA-AIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 373 ~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~-~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
+.+.+|+|++ ++++|++++++|++++|||||+|+|+... ..+.+.++.++++ |.++++..|.
T Consensus 848 --~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 848 --GESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp ----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred --chhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 1234666665 59999999999999999999999999884 5578889998876 8899888764
No 90
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.55 E-value=1.9e-15 Score=184.59 Aligned_cols=135 Identities=14% Similarity=0.127 Sum_probs=92.1
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHH
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
++.+++|+|+++++|++++|+||||||||||||++++....+. . |....... ..++. -+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-~------g~~vpa~~--~~i~~---~d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-I------GSYVPAEE--ATIGI---VDGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-H------TCCBSSSE--EEEEC---CSEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-c------Cccccchh--hhhhH---HHHHHHhCChH
Confidence 4679999999999999999999999999999999986211000 0 10000000 01111 11111111211
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCC
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLD 410 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD 410 (829)
|++ +. +.+.+|+|++|++.|+++ +.+|++++|||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 124689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCeEEEEEec
Q 044554 411 ARAAAIFM-RTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 411 ~~~~~~i~-~~l~~l~~-~g~tvllll~~ 437 (829)
+.....+. ..++.+++ .|.|++++.|+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~ 795 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHY 795 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 99999998 67777765 58999998874
No 91
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.55 E-value=2.7e-15 Score=174.37 Aligned_cols=61 Identities=25% Similarity=0.336 Sum_probs=56.9
Q ss_pred CCCC-CHHHHHHHHHHHHhhhCC--CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGL-STEKRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~L-SgGerqRlsIa~aL~~~p--~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+..| |||||||++||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ |+|||++.|+
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~ 457 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHL 457 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 3457 999999999999999999 99999999999999999999999999987 8999998874
No 92
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.54 E-value=2.1e-15 Score=181.49 Aligned_cols=127 Identities=21% Similarity=0.169 Sum_probs=94.0
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHH
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
++.+++|+|++ |++++|+||||||||||||+|+|..... ..|.+ ... .+..+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~-~~G~~------vpa--~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA-QVGSF------VPA--EEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH-TTTCC------BSS--SEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc-ccCce------eeh--hccceeeHHH---hhccCCHH
Confidence 46799999999 9999999999999999999999942100 01221 111 1234677766 34555655
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHh--hhCCCcceecCC---
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVEL--VANPSIIFMDEP--- 405 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL--~~~p~iL~LDEP--- 405 (829)
||+. .++|+|+++++.+++++ +++|++++||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5432 25799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCeEEEEEec
Q 044554 406 TSGLDARAA-AIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 406 TsGLD~~~~-~~i~~~l~~l~~~g~tvllll~~ 437 (829)
|++||..+. ..+++.+++ .|.|++++.|+
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~ 697 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHY 697 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCC
Confidence 999999875 578888766 58899988874
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.54 E-value=3e-15 Score=174.37 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=101.5
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhh
Q 044554 259 SGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAW 338 (829)
Q Consensus 259 s~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~ 338 (829)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 458999999999999999999999999995321 121 12345556531 12333321
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHH-----H
Q 044554 339 LRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 413 (829)
Q Consensus 339 lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~-----~ 413 (829)
+. ..+. ++ +...|+.++.+.. +..|||||+||+.+|+++..+|+++++| ||+|||.. .
T Consensus 330 -~~--g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 1221 22 2234555555443 3579999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecC
Q 044554 414 AAIFMRTVRNTVDTGRTVLFLLKRG 438 (829)
Q Consensus 414 ~~~i~~~l~~l~~~g~tvllll~~~ 438 (829)
+..+.++++.+++.|.||+++.|..
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcc
Confidence 9999999999988899999998764
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.53 E-value=2.3e-17 Score=192.20 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=106.4
Q ss_pred ceeeeeeeEE-EEeCCeEEEEEcCCCCCHHHHHHH--HhCCCCCCeeEEEEEEcCeecCc--cccccceeEEecCCCCCC
Q 044554 251 QLVLLNGVSG-AFRPGVLTALMGVSGAGKTTLLDV--LAGRKTSGYITGNIAISGYPKKQ--ETFTCISGYCEQNDIHSP 325 (829)
Q Consensus 251 ~~~iL~~vs~-~i~~Gei~al~G~sGaGKTTLL~~--LaG~~~~g~~~G~i~i~G~~~~~--~~~~~~~~yv~Q~~~~~~ 325 (829)
...+|+|||+ .+++||+++|+||||||||||+++ ++|..+++ +|.+.++|.+... ...++.+||++|+....+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4568999999 999999999999999999999999 67865433 5899999987422 122356799999754221
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCC
Q 044554 326 NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEP 405 (829)
Q Consensus 326 ~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEP 405 (829)
++.+ +.... ++ ...++++.+++.+..+... +.|||| +|+++++|||
T Consensus 102 ------~l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 ------KLFI---LDASP--DP-----EGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp ------SEEE---EECCC--CS-----SCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEECS
T ss_pred ------cEEE---EecCc--cc-----chhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECCH
Confidence 1111 01000 00 0112334444444444443 246665 4788999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHhCCCeEEEEEecC
Q 044554 406 TS-----GLDARAAAIFMRTVRNTVDTGRTVLFLLKRG 438 (829)
Q Consensus 406 Ts-----GLD~~~~~~i~~~l~~l~~~g~tvllll~~~ 438 (829)
|+ +||+..+..+.++++++++.|.||+++.|+-
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 98 5699999999999999988899999998863
No 95
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.53 E-value=3.2e-15 Score=183.00 Aligned_cols=126 Identities=18% Similarity=0.154 Sum_probs=87.6
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh--------CCCCCCeeEEEEEEcCeecCccccccceeEEecCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLA--------GRKTSGYITGNIAISGYPKKQETFTCISGYCEQND 321 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~La--------G~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~ 321 (829)
+++.+++|+|+.+++|++++|+||||||||||||+++ |..-+. .+. .++.+ +
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa--~~~---------------~~~~~---d 706 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC--ESA---------------EVSIV---D 706 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE--EEE---------------EEECC---S
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc--ccc---------------cchHH---H
Confidence 3457999999999999999999999999999999994 321110 000 00100 0
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHh--hhCCCc
Q 044554 322 IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVEL--VANPSI 399 (829)
Q Consensus 322 ~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL--~~~p~i 399 (829)
+++..+|+.+ .. .+++|++++++..+|++| +++|++
T Consensus 707 ----------------------------------~i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sL 744 (934)
T 3thx_A 707 ----------------------------------CILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSL 744 (934)
T ss_dssp ----------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCE
T ss_pred ----------------------------------HHHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcE
Confidence 0111112111 11 136888888888888888 899999
Q ss_pred ceecCCCCCCCHHHHHHH-HHHHHHHHh-CCCeEEEEEec
Q 044554 400 IFMDEPTSGLDARAAAIF-MRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 400 L~LDEPTsGLD~~~~~~i-~~~l~~l~~-~g~tvllll~~ 437 (829)
++|||||+|||+.....+ ..+++.+++ .|.++++..|.
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~ 784 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF 784 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 999999999999998888 666777776 48999988874
No 96
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.53 E-value=2.4e-16 Score=159.96 Aligned_cols=178 Identities=15% Similarity=0.116 Sum_probs=94.2
Q ss_pred EEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCC---CeeEEEEEEcCe
Q 044554 227 ITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTS---GYITGNIAISGY 303 (829)
Q Consensus 227 l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~---g~~~G~i~i~G~ 303 (829)
++++|+++.+. ..+|++ +.+++|+.++|+|+||||||||+|.|+|.... ....|.+...+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 67889998873 246777 88999999999999999999999999996410 112243322111
Q ss_pred e-cC-ccccccceeEEecCCCCCCCCC---HHHHHHHhhh-hc----------CCCCCCHHHHHHHHHHHHHHcCCccch
Q 044554 304 P-KK-QETFTCISGYCEQNDIHSPNVT---VYESLLYSAW-LR----------LPPEVDSQTRKMFIEEVMELVELNTLR 367 (829)
Q Consensus 304 ~-~~-~~~~~~~~~yv~Q~~~~~~~lT---V~E~l~f~a~-lr----------~~~~~~~~~~~~~v~~vl~~l~L~~~~ 367 (829)
. .. ...+....|+..++ .+... .+..+..... .+ .....+. ..+.+.+.++..++..+.
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~ 142 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLV 142 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEE
Confidence 0 00 00000001111100 00000 1111111110 00 0011111 112344455555554321
Q ss_pred -hhhccCCCCCCCCHHHHHH-HHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q 044554 368 -KALVGLPGLNGLSTEKRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRT 430 (829)
Q Consensus 368 -~~~vg~~~~~~LSgGerqR-lsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~t 430 (829)
.+++ ..+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus 143 v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 LLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 2222 3589999999 89999999999999999999999999999999999998766544
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.53 E-value=4.3e-15 Score=157.62 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=84.6
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHH
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYES 332 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 332 (829)
.+|+|+| +++|++++|+||||||||||+++|+|..++. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~-~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV-FKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSC-CCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceee-cCCcceeeeHH------------
Confidence 4899999 9999999999999999999999999964321 158898888764311 11111222221
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHH
Q 044554 333 LLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412 (829)
Q Consensus 333 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~ 412 (829)
.++++. ..+ |++||++|..+|+++++|||| |..
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 122211 122 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 413 AAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 413 ~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+...++ +. ++.|.+|++.+|+
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~ 132 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHT 132 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECC
T ss_pred HHHHHH---HH-HccCCEEEEEeCc
Confidence 876544 33 4569999998875
No 98
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.52 E-value=2.4e-15 Score=183.32 Aligned_cols=134 Identities=23% Similarity=0.339 Sum_probs=98.8
Q ss_pred EEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCH--H---HHHHHHHHHHHHcCCccc-hh
Q 044554 295 TGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDS--Q---TRKMFIEEVMELVELNTL-RK 368 (829)
Q Consensus 295 ~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~--~---~~~~~v~~vl~~l~L~~~-~~ 368 (829)
.++|.++|+++.. +..+||.|++.|...+.++..... . +..+...+.++.+||... .+
T Consensus 396 ~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~ 459 (916)
T 3pih_A 396 ALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLS 459 (916)
T ss_dssp GGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTT
T ss_pred hcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccccc
Confidence 4677777766421 234788888887554433221110 0 111233466778888765 45
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHHhhhCCC--cceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe----------
Q 044554 369 ALVGLPGLNGLSTEKRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK---------- 436 (829)
Q Consensus 369 ~~vg~~~~~~LSgGerqRlsIa~aL~~~p~--iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~---------- 436 (829)
+.+ ..|||||||||.||++|+++|+ +|+|||||+|||+.....+++.|++++++|.|||++.|
T Consensus 460 r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ 534 (916)
T 3pih_A 460 RSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADH 534 (916)
T ss_dssp SBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSE
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCE
Confidence 554 4799999999999999999887 99999999999999999999999999988999965433
Q ss_pred ----------cCcEEEEEcCCCC
Q 044554 437 ----------RGGQEIYVGPLGE 449 (829)
Q Consensus 437 ----------~~G~~vy~G~~~~ 449 (829)
++|++++.|++++
T Consensus 535 ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 535 IIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp EEEEESSSGGGCSEEEEEECHHH
T ss_pred EEEEcCCcccCCCEEEEeechhh
Confidence 5799999999754
No 99
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.51 E-value=6.8e-16 Score=160.95 Aligned_cols=148 Identities=15% Similarity=0.160 Sum_probs=91.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHh--CCCCCCeeEEEEEEcCeecCcc--ccccceeEEecCCCCCCCCCHHHHHHH
Q 044554 260 GAFRPGVLTALMGVSGAGKTTLLDVLA--GRKTSGYITGNIAISGYPKKQE--TFTCISGYCEQNDIHSPNVTVYESLLY 335 (829)
Q Consensus 260 ~~i~~Gei~al~G~sGaGKTTLL~~La--G~~~~g~~~G~i~i~G~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~E~l~f 335 (829)
+.+++|++++|+||||||||||+++|+ |...++ .|.+.+++...... ...+.+++++|+....+.+++.++...
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 378999999999999999999999999 552222 35566666543211 122345777776544444444443321
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCC-----
Q 044554 336 SAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLD----- 410 (829)
Q Consensus 336 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD----- 410 (829)
.... .. ......+ ...+.++..+......-..+|+++++||||++||
T Consensus 103 ~~~~------~~----~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 103 VVGL------PS----EEKFVLE------------------DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred cccc------cc----ccceecc------------------CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 1000 00 0000000 1233444444444444467999999999999998
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 411 ARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 411 ~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
...+..+.++++.++++|.||+++.|.
T Consensus 155 ~~~~~~l~~l~~~l~~~g~tii~vtH~ 181 (251)
T 2ehv_A 155 RKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 677777999999998889999999875
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.50 E-value=2.4e-15 Score=154.71 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=85.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC--CCCCC---eeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHH
Q 044554 260 GAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTSG---YITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLL 334 (829)
Q Consensus 260 ~~i~~Gei~al~G~sGaGKTTLL~~LaG--~~~~g---~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~ 334 (829)
+-+++||+++|+||||||||||+++|+| .++++ ...+.+.+++.... ..+.++++.|+..+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999 33322 12356777765321 11234555555443332 4555543
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH-HHHHHHHHHHhhh-------CCCcceecCCC
Q 044554 335 YSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE-KRKRLTIAVELVA-------NPSIIFMDEPT 406 (829)
Q Consensus 335 f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG-erqRlsIa~aL~~-------~p~iL~LDEPT 406 (829)
+.. ..+.+ +++++..+.+++. +|+++++||||
T Consensus 96 ~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VAR----------------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EEE----------------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EEe----------------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 321 11222 2222344444443 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 407 SGLDAR-------A-----AAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 407 sGLD~~-------~-----~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
+++|+. . ..++++.|++++++ |.||+++.|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH 178 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 178 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEee
Confidence 999984 2 23788888887654 899999886
No 101
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.49 E-value=2.2e-15 Score=166.19 Aligned_cols=158 Identities=13% Similarity=0.158 Sum_probs=102.3
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
.++.+|++..+. .+..+|+++ +.+.+||+++|+||||||||||+++|+|...+. .|.+.+.|++.
T Consensus 45 ~i~~~~l~~~~~------------tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~ 109 (347)
T 2obl_A 45 PLLRQVIDQPFI------------LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERG 109 (347)
T ss_dssp STTCCCCCSEEC------------CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCH
T ss_pred CeeecccceecC------------CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccH
Confidence 366677777763 135699999 999999999999999999999999999976543 58888888642
Q ss_pred Cc----------cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCC
Q 044554 306 KQ----------ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPG 375 (829)
Q Consensus 306 ~~----------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~ 375 (829)
.. ..+++.+.++.|.+. +..+.+.-... . ....+.....+ .+... ... .
T Consensus 110 ~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~-----------~-~~~ae~~~~~~-~~vl~-~ld--~ 168 (347)
T 2obl_A 110 REVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT-----------A-TTIAEYFRDQG-KNVLL-MMD--S 168 (347)
T ss_dssp HHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH-----------H-HHHHHHHHTTT-CEEEE-EEE--T
T ss_pred HHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH-----------H-HHHHHHHHhcc-ccHHH-HHh--h
Confidence 11 012344667776532 22222211100 0 00111111111 01000 000 1
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHh--CCC
Q 044554 376 LNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD--TGR 429 (829)
Q Consensus 376 ~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~--~g~ 429 (829)
+..+|+|| ||+++| +.+|++ |+|||+....++.++++++.+ +|.
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~Gs 214 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGS 214 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSE
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 24699999 899999 578877 999999999999999999874 465
No 102
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=8.2e-16 Score=173.32 Aligned_cols=160 Identities=11% Similarity=0.127 Sum_probs=93.1
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC--CCeeEEEEEEcCe
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT--SGYITGNIAISGY 303 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~--~g~~~G~i~i~G~ 303 (829)
.+.++||++.+ +++.+++|+|+++ +|+|+||||||||+|+|+|... ++ .|.+.+++.
T Consensus 11 ~l~~~~l~~~y-------------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~--~~~~~~~~~ 69 (418)
T 2qag_C 11 YVGFANLPNQV-------------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE--YPGPSHRIK 69 (418)
T ss_dssp ----CCCCCCT-------------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC--CCSCC----
T ss_pred cEEEEecceeE-------------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC--CCCcccCCc
Confidence 47788887765 3457999999998 9999999999999999999643 32 222222221
Q ss_pred ecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 304 PKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 304 ~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
+ ....+.+++++|++.+.+.+||.||+.++.... ..+. .+.+.+.+ +. .++.++
T Consensus 70 ~---t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~~--------~~~~~l 123 (418)
T 2qag_C 70 K---TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------DS--------KFEDYL 123 (418)
T ss_dssp ----CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------HH--------HHHHHT
T ss_pred c---ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------HH--------HHHHHH
Confidence 1 112345789999888888899999987764321 0110 11122111 11 245567
Q ss_pred HHHHHHHHHhhhCCC---cceecCCC-CCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 384 RKRLTIAVELVANPS---IIFMDEPT-SGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 384 rqRlsIa~aL~~~p~---iL~LDEPT-sGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+||+.|||+++.+|+ +|++|||| .|||+... +.++++.+ +.+++++.++
T Consensus 124 ~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 124 NAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp TTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred HHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence 789999999999999 99999999 69998873 44455543 7788887765
No 103
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.47 E-value=6.9e-14 Score=149.41 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=102.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhc
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLR 340 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr 340 (829)
.+++|++++|+||||||||||++.+++.... |++ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~----g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG----GPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT----CCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc----CCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 4899999999999999999999999984332 333 23433211 2346787766532 11222221 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCC--CCCHHH---HH
Q 044554 341 LPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 415 (829)
Q Consensus 341 ~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTs--GLD~~~---~~ 415 (829)
...+. ...+++++.+++.+..+.. +..+|+||+|++ ++++.+|+++++||||+ ++|... ..
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11222 2246677888877765543 357999998876 68888999999999999 999744 48
Q ss_pred HHHHHHHHHHh-CCCeEEEEEecC
Q 044554 416 IFMRTVRNTVD-TGRTVLFLLKRG 438 (829)
Q Consensus 416 ~i~~~l~~l~~-~g~tvllll~~~ 438 (829)
++++.|+++++ .|.||+++.|..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHHcCCEEEEEecCC
Confidence 88899999874 599999988753
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.47 E-value=6.1e-16 Score=182.88 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=86.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC------ccccccceeEEecCCCCCCCCCHHHHHHHhhhhcC
Q 044554 268 TALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK------QETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRL 341 (829)
Q Consensus 268 ~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~------~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~ 341 (829)
+||+|||||||||||++|+|...+ ..+|.|.++|.++. ...+++.++|++|+..+++.+||+|++.++.....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999997543 12689999998741 13456789999999999999999999987532110
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCC------CCCCCHHHHH
Q 044554 342 PPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 415 (829)
Q Consensus 342 ~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEP------TsGLD~~~~~ 415 (829)
.. + .++| ++++.++.+...+|+++++||| |+|||+..+.
T Consensus 127 ~~------------------~--------------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 GE------------------G--------------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp CS------------------S--------------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred CC------------------c--------------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 00 0 0111 1222233333458999999999 9999999999
Q ss_pred HHHHHHHHHHhCCCeE
Q 044554 416 IFMRTVRNTVDTGRTV 431 (829)
Q Consensus 416 ~i~~~l~~l~~~g~tv 431 (829)
++.++++++.+++.++
T Consensus 172 ~i~~li~~~l~~~~~i 187 (608)
T 3szr_A 172 KIKTLIKKYIQRQETI 187 (608)
T ss_dssp HHHHHHHHHTTSSSCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999999976554333
No 105
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.47 E-value=1.3e-13 Score=167.30 Aligned_cols=119 Identities=22% Similarity=0.347 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHhhhhcCCCC---CCH---HHHHHHHHHHHHHcCCccc-hhhhccCCCCCCCCHHHHHHHHHHHHhhhCC
Q 044554 325 PNVTVYESLLYSAWLRLPPE---VDS---QTRKMFIEEVMELVELNTL-RKALVGLPGLNGLSTEKRKRLTIAVELVANP 397 (829)
Q Consensus 325 ~~lTV~E~l~f~a~lr~~~~---~~~---~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p 397 (829)
..+||.|++.|...+.++.. ... ++..+++ +.++.+||..+ .|+.+ ..||||||||+.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 46899999999776654321 000 1223344 34788899765 56655 479999999999999999985
Q ss_pred --CcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE---------------EEe-----cCcEEEEEcCCCC
Q 044554 398 --SIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLF---------------LLK-----RGGQEIYVGPLGE 449 (829)
Q Consensus 398 --~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvll---------------ll~-----~~G~~vy~G~~~~ 449 (829)
++++|||||+|||+.....+++.|+++.+.|.|||+ ++. ++|++++.|++++
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence 899999999999999999999999999988999954 442 5899999999876
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.46 E-value=4.3e-15 Score=164.16 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=96.4
Q ss_pred eeeeee-EEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC--C--CCeeEEE-EEEcCeecCccccccceeEEecCCCCCCC
Q 044554 253 VLLNGV-SGAFRPGVLTALMGVSGAGKTTLLDVLAGRK--T--SGYITGN-IAISGYPKKQETFTCISGYCEQNDIHSPN 326 (829)
Q Consensus 253 ~iL~~v-s~~i~~Gei~al~G~sGaGKTTLL~~LaG~~--~--~g~~~G~-i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~ 326 (829)
..||++ ++.+++|++++|+||||||||||++.+++.. + .|...|. +++++.+.. .++++++++|+..+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 346665 5899999999999999999999999999953 2 1212356 788876431 13446667776544332
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhh-------hCCCc
Q 044554 327 VTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELV-------ANPSI 399 (829)
Q Consensus 327 lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~-------~~p~i 399 (829)
++.||+.+... . -|.+|+|++.++++++ .+|++
T Consensus 195 -~v~~ni~~~~~------~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 195 -EVLKHIYVARA------F---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp -HHGGGEEEEEC------C---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred -HHhhCEEEEec------C---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 44444433210 0 1345666666666666 68999
Q ss_pred ceecCCCCCCCHHH------------HHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 400 IFMDEPTSGLDARA------------AAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 400 L~LDEPTsGLD~~~------------~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
+++||||+++|+.. ..++++.|++++++ |.||+++-|.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 99999999999852 45667777777654 8888887664
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.44 E-value=3.4e-14 Score=171.96 Aligned_cols=134 Identities=15% Similarity=0.110 Sum_probs=90.4
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHH
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
++.+++|+|++ ++|++++|+||||||||||||+|+|....+. .|..+... +..++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHH
Confidence 46799999999 9999999999999999999999999421100 12111111 123566555 44555665
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCC
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLD 410 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD 410 (829)
|++..+ .+.+|+|++ +++.+..++++|++++||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCC
Confidence 554321 123566665 4555556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHh-CCCeEEEEEec
Q 044554 411 ARAAAIF-MRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 411 ~~~~~~i-~~~l~~l~~-~g~tvllll~~ 437 (829)
+.....+ .+.++.+.+ .|.++++..|+
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~ 729 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHY 729 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCC
Confidence 9877775 678888887 48999998874
No 108
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.43 E-value=1.9e-13 Score=155.20 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHhh----hCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 378 GLSTEKRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~----~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
.||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+++.+++++.|+
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~ 396 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK 396 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 39999999999999999 5799999999999999999999999999987667888888764
No 109
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.42 E-value=1.3e-13 Score=133.67 Aligned_cols=62 Identities=24% Similarity=0.312 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHH------HHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 376 LNGLSTEKRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 376 ~~~LSgGerqRlsIa------~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.++|+||+++.|+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~ 122 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 122 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEECh
Confidence 457999999999876 89999999999999999999999999999999988778999998864
No 110
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.41 E-value=2.4e-13 Score=165.52 Aligned_cols=120 Identities=21% Similarity=0.320 Sum_probs=91.7
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCH------HHHHHHHHHHHHHcCCccc-hhhhccCCCCCCCCHHHHHHHHHHHHhhhC
Q 044554 324 SPNVTVYESLLYSAWLRLPPEVDS------QTRKMFIEEVMELVELNTL-RKALVGLPGLNGLSTEKRKRLTIAVELVAN 396 (829)
Q Consensus 324 ~~~lTV~E~l~f~a~lr~~~~~~~------~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~~LSgGerqRlsIa~aL~~~ 396 (829)
+..+||.|++.|...+.++..... ++..+++ +.++.+||..+ .++.+ ..||||||||+.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~-----~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA-----ATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG-----GGCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc-----ccCCHHHHHHHHHHHHHhhC
Confidence 346899999999655543321000 1223334 34778888765 56554 47999999999999999999
Q ss_pred --CCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE---------------EEe-----cCcEEEEEcCCCC
Q 044554 397 --PSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLF---------------LLK-----RGGQEIYVGPLGE 449 (829)
Q Consensus 397 --p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvll---------------ll~-----~~G~~vy~G~~~~ 449 (829)
|++++|||||+|||+.....+.+.|+++.+.|.|||+ ++. ++|++++.|++++
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 4899999999999999999999999999989999954 442 5799999998754
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=2.4e-15 Score=151.89 Aligned_cols=133 Identities=21% Similarity=0.237 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPP 343 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~ 343 (829)
|++++|+||||||||||+++|+|.... +| +.++|....+ ...++.+||++|+. .... +++ +++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKS---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHH---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhccc---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccccC
Confidence 789999999999999999999995431 36 6677765532 23467789999974 1111 111 1111000
Q ss_pred CCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHH-HHHH---HhhhCCCcceecC--CCCCCCHHHHHHH
Q 044554 344 EVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIF 417 (829)
Q Consensus 344 ~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRl-sIa~---aL~~~p~iL~LDE--PTsGLD~~~~~~i 417 (829)
+. ...+..+|.. ...+|+|||+++ ++++ |+..+|+++++|| |+..+|.....
T Consensus 69 --~~-----------------~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~-- 126 (189)
T 2i3b_A 69 --PP-----------------GKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ-- 126 (189)
T ss_dssp --CS-----------------SSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH--
T ss_pred --Cc-----------------cccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH--
Confidence 00 0011123322 136999999988 4444 5789999999999 89889987544
Q ss_pred HHHHHHHHhCCCeEEE
Q 044554 418 MRTVRNTVDTGRTVLF 433 (829)
Q Consensus 418 ~~~l~~l~~~g~tvll 433 (829)
.|+++.+..+++++
T Consensus 127 --~l~~~l~~~~~~il 140 (189)
T 2i3b_A 127 --AVRQTLSTPGTIIL 140 (189)
T ss_dssp --HHHHHHHCSSCCEE
T ss_pred --HHHHHHhCCCcEEE
Confidence 44444445556654
No 112
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=2.5e-14 Score=160.80 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=109.6
Q ss_pred ceeeeeeeEEEEeCCeE--EEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCC
Q 044554 251 QLVLLNGVSGAFRPGVL--TALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVT 328 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei--~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 328 (829)
+.. |+++|+++++|++ ++|+||||||||||+|+|+|..-. |... .... ....++.++|++|++.+++.+|
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~----g~~~-~~~~--~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE----GEPA-THTQ--PGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC--SSCEEEEEEEEEEC--CEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc----CCcC-CCCC--ccceEeeEEEEeecCccccccc
Confidence 345 9999999999999 999999999999999999997422 2111 1101 1122456899999988888899
Q ss_pred HHHHHHHhhhhcCCCCCCHHH--------HHHHHHHHHHHc-CCc----cchhhh----cc--CCCCCCCCHHHHHHHHH
Q 044554 329 VYESLLYSAWLRLPPEVDSQT--------RKMFIEEVMELV-ELN----TLRKAL----VG--LPGLNGLSTEKRKRLTI 389 (829)
Q Consensus 329 V~E~l~f~a~lr~~~~~~~~~--------~~~~v~~vl~~l-~L~----~~~~~~----vg--~~~~~~LSgGerqRlsI 389 (829)
|.||+.++.. .+... ..+..++.++.. ++. ...|+. +. .+...+++-.+ +.|
T Consensus 99 v~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 99 IVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp EEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred hhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 9999877532 11110 122344444443 332 112221 11 11224677776 789
Q ss_pred HHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEE
Q 044554 390 AVELVANPSIIFMDEPTSGLDARAAAIFMRTVRN-TVDTGRTVLFLL 435 (829)
Q Consensus 390 a~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~-l~~~g~tvllll 435 (829)
+++|..+++++++||||..|.......+.+.+++ +...|..|+.+-
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFP 216 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecC
Confidence 9999999999999999999999999999999986 777787777654
No 113
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.37 E-value=4.4e-15 Score=155.67 Aligned_cols=147 Identities=15% Similarity=0.169 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh---CCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhc
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLA---GRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLR 340 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~La---G~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr 340 (829)
++++++|+||||||||||+++|+ |.... ..|++.++|.+.. ....+.+.+++|+..+.+..|+.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~--~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL--SSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE--EHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 86542 3477777665432 122334456677777788889999997643210
Q ss_pred CC-----CCCCHHHHHHHHHHHHH--HcC------------CccchhhhccCCCCCCCCHHHHHHHHHHHHh-hhCCCcc
Q 044554 341 LP-----PEVDSQTRKMFIEEVME--LVE------------LNTLRKALVGLPGLNGLSTEKRKRLTIAVEL-VANPSII 400 (829)
Q Consensus 341 ~~-----~~~~~~~~~~~v~~vl~--~l~------------L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL-~~~p~iL 400 (829)
.. ...+... ..++.+.+ ..+ +....++.+ ..+|| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~-----~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWI-----HPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE-----ETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC-----cCCCC----Cc---cccccCCCccc
Confidence 00 0111111 11222221 122 222223322 36888 66 677 9999999
Q ss_pred eec----CCCCCCCHHHHHHHHHHHHHHHhC
Q 044554 401 FMD----EPTSGLDARAAAIFMRTVRNTVDT 427 (829)
Q Consensus 401 ~LD----EPTsGLD~~~~~~i~~~l~~l~~~ 427 (829)
+|| |||+|||..+...+.+.++++.++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999 999999999999999999887653
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.36 E-value=4.7e-13 Score=147.96 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=77.5
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHH
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESL 333 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l 333 (829)
+|+++ ..++|++++|+|||||||||||++|+|...+. ..|.|...+.+.+. ..+...+++.|........|
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~----- 184 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLG----- 184 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSC-----
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccccCC-----
Confidence 44444 67899999999999999999999999954321 12444433333321 12223355555432211111
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHH
Q 044554 334 LYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARA 413 (829)
Q Consensus 334 ~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~ 413 (829)
-.+ +||++|..+|++|++|||| |..+
T Consensus 185 -----------------------------------------------~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 185 -----------------------------------------------FSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp -----------------------------------------------HHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred -----------------------------------------------HHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 111 8999999999999999999 6655
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecC
Q 044554 414 AAIFMRTVRNTVDTGRTVLFLLKRG 438 (829)
Q Consensus 414 ~~~i~~~l~~l~~~g~tvllll~~~ 438 (829)
.. .+.+.++.|++|++.+|..
T Consensus 211 ~~----~~~~~~~~G~~vl~t~H~~ 231 (356)
T 3jvv_A 211 IR----LALTAAETGHLVFGTLHTT 231 (356)
T ss_dssp HH----HHHHHHHTTCEEEEEESCS
T ss_pred HH----HHHHHHhcCCEEEEEEccC
Confidence 44 4444567799999998764
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.35 E-value=7.1e-15 Score=147.27 Aligned_cols=143 Identities=14% Similarity=0.023 Sum_probs=91.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc-ccccceeEEecCCCCCCCCCHHHHHHHhhhh
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE-TFTCISGYCEQNDIHSPNVTVYESLLYSAWL 339 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~-~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~l 339 (829)
.+++|++++|+||||||||||+++|+|.+. .|.|.++|.+.... ..++.++|++|+.. +..||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 367999999999999999999999999843 47889988654211 11234578887644 467899998765432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHH
Q 044554 340 RLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMR 419 (829)
Q Consensus 340 r~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~ 419 (829)
....... ..++.+++..++....+. +. .+..+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1000000 001111111122222110 11 12359999999999999999999987 68877777777
Q ss_pred HHHHHH
Q 044554 420 TVRNTV 425 (829)
Q Consensus 420 ~l~~l~ 425 (829)
.++.+.
T Consensus 143 ~~~~l~ 148 (191)
T 1zp6_A 143 QFADLG 148 (191)
T ss_dssp HTTCCG
T ss_pred HHhccC
Confidence 666553
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.31 E-value=8.9e-14 Score=143.67 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=82.9
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCH----HHHHH
Q 044554 259 SGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTV----YESLL 334 (829)
Q Consensus 259 s~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV----~E~l~ 334 (829)
.-..++|++++|+||||||||||+|+|+|..++....|.|.+++.+... ..++.++|++|++..++.+|+ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3467999999999999999999999999965432357899998876542 234568999998655544444 23222
Q ss_pred HhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHH
Q 044554 335 YSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAA 414 (829)
Q Consensus 335 f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~ 414 (829)
+.... . +.| +++ +.+++.++++++|| ||+.++
T Consensus 89 ~~~~~-------------------------------y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VFGNY-------------------------------Y------GTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ETTEE-------------------------------E------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHhcc-------------------------------C------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 21100 0 111 111 23445567999999 999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEEe
Q 044554 415 AIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 415 ~~i~~~l~~l~~~g~tvllll~ 436 (829)
.++.+.+. ++.||+++.|
T Consensus 121 ~~i~~~l~----~~~tI~i~th 138 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPP 138 (219)
T ss_dssp HHHHHHCT----TCEEEEEECS
T ss_pred HHHHHHcc----CCEEEEEECC
Confidence 99998876 4788887765
No 117
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.30 E-value=9e-13 Score=145.25 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=85.7
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-CCeeEEEEEEc-CeecCccccccceeEEecCCCCCCCCCHHHH
Q 044554 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKT-SGYITGNIAIS-GYPKKQETFTCISGYCEQNDIHSPNVTVYES 332 (829)
Q Consensus 255 L~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~-~g~~~G~i~i~-G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 332 (829)
+++++.. .+|++++|+||||||||||+|+|+|... + .+|+|.++ |.... ...++.+++++|+..++++.||+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~--~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI--LTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC--CCC--------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc--ccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh
Confidence 5555553 4899999999999999999999999754 3 36888876 65432 2334568999999888889999984
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHh
Q 044554 333 LLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVEL 393 (829)
Q Consensus 333 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL 393 (829)
. + ...+.++..+.++++++.+++.+..|... .++| ||+||++||+++
T Consensus 282 ---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 ---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp ---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred ---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 2 1 13455555667888999999988777654 4799 999999999865
No 118
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.29 E-value=2.6e-14 Score=141.97 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC-CeeEEEEEEcCeecC------ccccc-ccee----EEecCCCCCCCCCHHHHH
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGRKTS-GYITGNIAISGYPKK------QETFT-CISG----YCEQNDIHSPNVTVYESL 333 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~~~~-g~~~G~i~i~G~~~~------~~~~~-~~~~----yv~Q~~~~~~~lTV~E~l 333 (829)
++++|+|+||||||||+++|+|..++ |...|.|.++|.++. ...++ +.+| +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 57999999999999999999995432 333699999998732 12344 3567 788876544 110
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHH-cCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcce-------ecCC
Q 044554 334 LYSAWLRLPPEVDSQTRKMFIEEVMEL-VELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIF-------MDEP 405 (829)
Q Consensus 334 ~f~a~lr~~~~~~~~~~~~~v~~vl~~-l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~-------LDEP 405 (829)
.+.+ ....++++++. +. -.|+.++. +||||||||++|||+++.+|++.- =|.|
T Consensus 77 -----------~~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 -----------VSEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----------CCHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----------CChh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0111 11134566665 43 25777764 699999999999999999998742 2444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 044554 406 TSG---LDARAAAIFMRTVRNTVDTG 428 (829)
Q Consensus 406 TsG---LD~~~~~~i~~~l~~l~~~g 428 (829)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 33445567777776655443
No 119
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.28 E-value=4e-13 Score=137.97 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=92.8
Q ss_pred eeeeeeeEE-EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcccccc---ceeEEecCCCCCCCC
Q 044554 252 LVLLNGVSG-AFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTC---ISGYCEQNDIHSPNV 327 (829)
Q Consensus 252 ~~iL~~vs~-~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~---~~~yv~Q~~~~~~~l 327 (829)
...||++.+ .+++|++++|+||||||||||++.|++...+ ..|.+.+.+.+.......+ ..++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 456888885 8999999999999999999999999974321 1234444332211111100 112211110000 00
Q ss_pred CHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCC--cceecCC
Q 044554 328 TVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPS--IIFMDEP 405 (829)
Q Consensus 328 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~--iL~LDEP 405 (829)
++ ++...+.++ +..+ ....|.+|.++...+.....+|+ ++++|||
T Consensus 86 ~~------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 000000000 0000 12459999988888887778999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHh-CCCeEEEEEec
Q 044554 406 TSGL--DARAAAIFMRTVRNTVD-TGRTVLFLLKR 437 (829)
Q Consensus 406 TsGL--D~~~~~~i~~~l~~l~~-~g~tvllll~~ 437 (829)
|+++ |+....++++.|+++++ .|.||+++.|.
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQY 167 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 9888 99999999999999875 48888888764
No 120
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.27 E-value=5.1e-15 Score=161.54 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCC------eeEEEEEEcCeecCcc------------------ccccceeEE---e
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGRKTSG------YITGNIAISGYPKKQE------------------TFTCISGYC---E 318 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~~~~g------~~~G~i~i~G~~~~~~------------------~~~~~~~yv---~ 318 (829)
++++|+|+||||||||||.|.|..... ...|+|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999964110 1258888888775321 233446666 5
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCCC--CH-HHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhh
Q 044554 319 QNDIHSPNVTVYESLLYSAWLRLPPEV--DS-QTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVA 395 (829)
Q Consensus 319 Q~~~~~~~lTV~E~l~f~a~lr~~~~~--~~-~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~ 395 (829)
|+..+.+..+|.||..++.....-... +. ..+...++.++..+++.+..+... ++|+|||||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 766666678888877653100000000 00 001111223344455555555543 589999999999999999
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 396 NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 396 ~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
+|+++ ||| ..+.+.++++. .+.+|+++.|
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh 187 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTH 187 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCS
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecc
Confidence 99988 999 67888888874 5778877654
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.24 E-value=3e-14 Score=158.34 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=88.6
Q ss_pred eeeeeEEEEeC--CeEEEEEcCCCCCHHHHHHHHhCCCCCCeeE----EEEEEc----CeecC--ccccccceeEEecCC
Q 044554 254 LLNGVSGAFRP--GVLTALMGVSGAGKTTLLDVLAGRKTSGYIT----GNIAIS----GYPKK--QETFTCISGYCEQND 321 (829)
Q Consensus 254 iL~~vs~~i~~--Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~----G~i~i~----G~~~~--~~~~~~~~~yv~Q~~ 321 (829)
+.+.|++.+++ |+.++|+||||||||||+++|+|...+ .. |++.++ |.+.. ...+ +.+++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 45679999999 999999999999999999999996543 23 444442 21110 0011 1233333322
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhh-hCCCcc
Q 044554 322 IHSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELV-ANPSII 400 (829)
Q Consensus 322 ~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~-~~p~iL 400 (829)
.. ...|++||+.+. + .+..++.. ..+|+|++||..+++++. .+|+++
T Consensus 234 ~~-~~~t~~~nl~~~-------------------------~-~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 ID-YAVRHSHKIAFI-------------------------D-TDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HH-HHHHHCSSEEEE-------------------------S-SCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HH-HHHhccCCEEEE-------------------------e-CCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 11 112222222111 0 01111111 135667788888888775 599999
Q ss_pred eecC---CC------CCCCHHHHHHHHHHHHHHHh-CCCeEEEEE
Q 044554 401 FMDE---PT------SGLDARAAAIFMRTVRNTVD-TGRTVLFLL 435 (829)
Q Consensus 401 ~LDE---PT------sGLD~~~~~~i~~~l~~l~~-~g~tvllll 435 (829)
+||| |+ +++|...+..+.+.|+++.+ .|.+++++-
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild 326 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE 326 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC
Confidence 9999 65 58999999999999998765 378888775
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.23 E-value=2.2e-13 Score=133.49 Aligned_cols=80 Identities=20% Similarity=0.125 Sum_probs=65.2
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCH
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 329 (829)
+++.+++++|+++++|++++|+||||||||||+|+|+|.. + .+|+|.++|.++... ... ..+++|+..++ .+||
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~-~~~-~~~~~q~~~l~-~ltv 91 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEE-YNI-AGKMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEE-EEE-TTEEEEEEECT-TCSC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeee-ccC-CCcceeccccc-cCCc
Confidence 3457899999999999999999999999999999999965 3 368899999876421 111 13799988777 8999
Q ss_pred HHHHHH
Q 044554 330 YESLLY 335 (829)
Q Consensus 330 ~E~l~f 335 (829)
.|++.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999965
No 123
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.22 E-value=8.6e-13 Score=150.16 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=103.7
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc-------c--cccceeEEecCCCCCC
Q 044554 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE-------T--FTCISGYCEQNDIHSP 325 (829)
Q Consensus 255 L~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~-------~--~~~~~~yv~Q~~~~~~ 325 (829)
-+++|+++++|++++|+|+||||||||+++|+|...+ ..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 3689999999999999999999999999999996432 148899987664321 1 2456899999988888
Q ss_pred CCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhh-hCCC-cceec
Q 044554 326 NVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELV-ANPS-IIFMD 403 (829)
Q Consensus 326 ~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~-~~p~-iL~LD 403 (829)
.+||++++.++..-. .+ --+++..|+.+.... +-..-+||+.+++++. ..|. +++..
T Consensus 361 ~~tV~e~l~~a~~~~----~D--------vVLIDTaGrl~~~~~---------lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID--------VLIADTAGRLQNKSH---------LMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCSCCCHHH---------HHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC--------EEEEeCCCccchhhh---------HHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 899999998864311 10 001222232222111 1123457888888764 4564 56566
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEEecCc
Q 044554 404 EPTSGLDARAAAIFMRTVRNTVD-TGRTVLFLLKRGG 439 (829)
Q Consensus 404 EPTsGLD~~~~~~i~~~l~~l~~-~g~tvllll~~~G 439 (829)
++|+|.|.. +.++.+.+ .|.|.+++.+-+|
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKLD~ 450 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKLDG 450 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECGGG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcCCC
Confidence 688886554 33444443 4788888887554
No 124
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.20 E-value=9e-14 Score=152.87 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=103.7
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc-------ccccceeEEecCCCCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE-------TFTCISGYCEQNDIHS 324 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~-------~~~~~~~yv~Q~~~~~ 324 (829)
+.+|+++|+++++|++++|+||||||||||+|+|+|...+ ..|++.+.|.+.... ..++.+++++|++..+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 5689999999999999999999999999999999995432 147788888765321 2355689999988776
Q ss_pred CCC------------CHHHHHHHh-----------------------------hhhcCCCCCCHHH-HHHHHHHHHHHcC
Q 044554 325 PNV------------TVYESLLYS-----------------------------AWLRLPPEVDSQT-RKMFIEEVMELVE 362 (829)
Q Consensus 325 ~~l------------TV~E~l~f~-----------------------------a~lr~~~~~~~~~-~~~~v~~vl~~l~ 362 (829)
+.. +++|.+... ..+..+...+..+ .++.+.+..+.+.
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 432 233333110 0000000000000 0000111111111
Q ss_pred CccchhhhccCCCCCCCCHHHHHHHHHHHHhhh------CCCcceecCCCCCCCHHHHHHHHHHHHHHHh
Q 044554 363 LNTLRKALVGLPGLNGLSTEKRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIFMRTVRNTVD 426 (829)
Q Consensus 363 L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~------~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~ 426 (829)
+ +..|.. ....+|+|++|++..+++++. +|++++ ||++|.....++.+.|.++.+
T Consensus 200 l-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 V-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp E-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred E-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 1 111110 113478999999999999987 688876 999999999999999988653
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.19 E-value=5.1e-12 Score=128.90 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=84.3
Q ss_pred eeeeeeE-EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHH
Q 044554 253 VLLNGVS-GAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYE 331 (829)
Q Consensus 253 ~iL~~vs-~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 331 (829)
..||++. +-+++|++++|+||||||||||++.|++ ..+ .+.+.+ ..++.. +...+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~--~~v~~i-----------------~~~~~~-~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG--KKVAYV-----------------DTEGGF-SPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC--SEEEEE-----------------ESSCCC-CHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC--CcEEEE-----------------ECCCCC-CHHHHHH
Confidence 4567776 4799999999999999999999999998 221 122333 222111 0001111
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHH--HHHHHHHHHHhhhC-CCcceecCCCCC
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTE--KRKRLTIAVELVAN-PSIIFMDEPTSG 408 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG--erqRlsIa~aL~~~-p~iL~LDEPTsG 408 (829)
... . ...+. +++++.+. +. ..|++ +++++..+++++.+ |+++++||||++
T Consensus 65 ~~~---~----~~~~~-------~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 65 MAE---T----RGLNP-------EEALSRFI--------LF-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHH---T----TTCCH-------HHHHHHEE--------EE-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHH---h----cCCCh-------HHHhhcEE--------EE-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 110 0 01111 12222221 11 23333 46788889999986 999999999999
Q ss_pred CCHH--------HHHHHHHHHHHHHhC-CCeEEEEEec
Q 044554 409 LDAR--------AAAIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 409 LD~~--------~~~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
+|.. ...++++.|++++++ |.||+++.|.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~ 155 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQV 155 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeE
Confidence 9973 335567778888765 8888887764
No 126
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.18 E-value=7e-13 Score=142.70 Aligned_cols=130 Identities=14% Similarity=0.064 Sum_probs=84.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhh----
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAW---- 338 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~---- 338 (829)
+++.+++|.|+||||||||.+.|++.... .| . . ++.+.+|+||+.+++ .++++|+.++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCC-hHHHHHHhccccccch
Confidence 46789999999999999999999986432 11 0 1 234556699998875 588999987531
Q ss_pred hc---CCCCCCHHHHHHHHHHHHHHcCCcc--c--hhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCH
Q 044554 339 LR---LPPEVDSQTRKMFIEEVMELVELNT--L--RKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA 411 (829)
Q Consensus 339 lr---~~~~~~~~~~~~~v~~vl~~l~L~~--~--~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~ 411 (829)
+. .|...+. +...+.++.+.... . ....+.. ....+||||+||+.+|++...+|+|+|+|||++++|+
T Consensus 93 ~~~~g~p~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p~-y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~ 167 (290)
T 1odf_A 93 LQGRGLPGTHDM----KLLQEVLNTIFNNNEHPDQDTVVLPK-YDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP 167 (290)
T ss_dssp GSSSCSTTSBCH----HHHHHHHHHHTC------CCEEEECC-EETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred hhhccCcchhHH----HHHHHHHHHhhccCccccCcceeecc-CccccCCccccccccccceEcCCCEEEEeCccccCCc
Confidence 11 1333332 23455555553320 0 1111111 1247999999999997332229999999999999998
Q ss_pred HH
Q 044554 412 RA 413 (829)
Q Consensus 412 ~~ 413 (829)
..
T Consensus 168 ~~ 169 (290)
T 1odf_A 168 IL 169 (290)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 127
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.14 E-value=3.8e-11 Score=119.30 Aligned_cols=60 Identities=12% Similarity=0.198 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHhhh----CCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~----~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.+++++.|+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~ 126 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLR 126 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSC
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEec
Confidence 4799999999999999974 4699999999999999999999999999865 4566666654
No 128
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.14 E-value=3.3e-12 Score=138.27 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=81.1
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEE---cCeecCcc--ccc-cceeEEecCCCCC-----CCCCHH
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAI---SGYPKKQE--TFT-CISGYCEQNDIHS-----PNVTVY 330 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i---~G~~~~~~--~~~-~~~~yv~Q~~~~~-----~~lTV~ 330 (829)
+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|.+.... ..+ +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3579999999999999999999999 7654 3688988 88765432 122 2579999998653 67899
Q ss_pred HHH--HHhh----hhcCCCCCCHHHHHHHHHHHHHHcCCcc-chhhhccCCCCCCCCHHHHHHHHHHHH
Q 044554 331 ESL--LYSA----WLRLPPEVDSQTRKMFIEEVMELVELNT-LRKALVGLPGLNGLSTEKRKRLTIAVE 392 (829)
Q Consensus 331 E~l--~f~a----~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~LSgGerqRlsIa~a 392 (829)
|++ .|.. .++........+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 888 4541 0111111111122345889999999986 666665 3699989999999874
No 129
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.14 E-value=2.3e-12 Score=145.19 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=93.7
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHH
Q 044554 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLL 334 (829)
Q Consensus 255 L~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~ 334 (829)
-++++++++.|+.++|+|+|||||||||++|+|... .+.+.+.. .....++++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999632 12333221 12233455555431 1111111110
Q ss_pred HhhhhcCCCCCCHHHH--HHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHH
Q 044554 335 YSAWLRLPPEVDSQTR--KMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412 (829)
Q Consensus 335 f~a~lr~~~~~~~~~~--~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~ 412 (829)
+............... .++++.++..+++. +.. ...+|+|++||+.++++|+.+|.++++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000001111100 01122233333333 111 236999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHH-HhCCCeEEEEEecCc
Q 044554 413 AAAIFMRTVRNT-VDTGRTVLFLLKRGG 439 (829)
Q Consensus 413 ~~~~i~~~l~~l-~~~g~tvllll~~~G 439 (829)
.+ ..++.+++. .+.|.+++.+....|
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCc
Confidence 77 445555444 445778877765543
No 130
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.14 E-value=1.7e-11 Score=135.94 Aligned_cols=121 Identities=13% Similarity=0.076 Sum_probs=81.8
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-cccccceeEEe-cCCCCCCCCCHHH
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ-ETFTCISGYCE-QNDIHSPNVTVYE 331 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~-~~~~~~~~yv~-Q~~~~~~~lTV~E 331 (829)
+++++|+.+++|++++|+||||||||||+|+|+|..++. +|.|.++|...-. ...++.+++++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 349999999999999999999999999999999976543 6899998853211 12455678888 54321
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCH
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA 411 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~ 411 (829)
+++++..+|-.|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011122345556666677899999999985
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 412 RAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 412 ~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
.++.+.++.+.....|++..+|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHA 286 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEEC
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECC
Confidence 24556666665444566666654
No 131
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.13 E-value=1.9e-11 Score=136.09 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=83.3
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHH
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESL 333 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l 333 (829)
+|++++ +++|++++|+||||||||||+++|+|..++. .+|+|...|.+.. ...++.+++++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee------------
Confidence 567765 8999999999999999999999999964321 1478877666553 23455678888841
Q ss_pred HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHH
Q 044554 334 LYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARA 413 (829)
Q Consensus 334 ~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~ 413 (829)
++++ ...+ +.+|+++|..+|+++++|||+ |..+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 1111 0124 458999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEec
Q 044554 414 AAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 414 ~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
... .++. +..|.+++..+|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~ 243 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHT 243 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCC
T ss_pred HHH---HHHH-HhcCCEEEEEECc
Confidence 443 3333 4568888777764
No 132
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.13 E-value=3.3e-12 Score=139.62 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=93.8
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc-------ccccc--eeEEecCCCCCCCCCHHHH
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE-------TFTCI--SGYCEQNDIHSPNVTVYES 332 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~-------~~~~~--~~yv~Q~~~~~~~lTV~E~ 332 (829)
.++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+++. +.+++|+....|.+||+||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 368999999999999999999999995432 247899998876421 11223 4589999888999999999
Q ss_pred HHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHH
Q 044554 333 LLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDAR 412 (829)
Q Consensus 333 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~ 412 (829)
+.++..... + ..+++..|+.+..+.. .++--.+++++..++.+++||.+|
T Consensus 204 l~~~~~~~~----d--------~vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t------ 253 (328)
T 3e70_C 204 IQHAKARGI----D--------VVLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALA------ 253 (328)
T ss_dssp HHHHHHHTC----S--------EEEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGG------
T ss_pred HHHHHhccc----h--------hhHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHH------
Confidence 987532110 0 0012222332222211 112223778887666666676444
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEEecCc
Q 044554 413 AAAIFMRTVRNTVD-TGRTVLFLLKRGG 439 (829)
Q Consensus 413 ~~~~i~~~l~~l~~-~g~tvllll~~~G 439 (829)
..++++.++.+.+ .+.|++++.+-+|
T Consensus 254 -~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 254 -GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp -TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 3466666777764 4889999987654
No 133
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.10 E-value=5.3e-13 Score=136.24 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=80.3
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCCCC-CeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhc
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGRKTS-GYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLR 340 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~~~~-g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr 340 (829)
.++|++++|+||||||||||+++|+|...+ |...|.|..+|. ++.. +..+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~-------------------~~~~-~~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF-------------------HLDN-RLLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG-------------------BCCH-HHHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC-------------------cCCH-HHHHHhcccccCC
Confidence 478999999999999999999999996432 212344444443 3221 1111111000001
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHH-HHhhhCCCcceecCCC-----------CC
Q 044554 341 LPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIA-VELVANPSIIFMDEPT-----------SG 408 (829)
Q Consensus 341 ~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa-~aL~~~p~iL~LDEPT-----------sG 408 (829)
.+...+... ..+.++.+...+..+....+.+ .+.|+||+||++++ +.++.++.++++|||. .-
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~ 153 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIR 153 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEE
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEE
Confidence 111112111 2223332211111111222222 35899999999998 8999999999999985 33
Q ss_pred CCHHHHHHHHHHHHHHHhCC
Q 044554 409 LDARAAAIFMRTVRNTVDTG 428 (829)
Q Consensus 409 LD~~~~~~i~~~l~~l~~~g 428 (829)
+|......+.+.+++..+.|
T Consensus 154 vd~~~~~~~~R~~~R~~~~g 173 (208)
T 3c8u_A 154 LEVPMADLEARLVQRWLDHG 173 (208)
T ss_dssp ECCCHHHHHHHHHHHHHHTT
T ss_pred EeCCHHHHHHHHHHHHHhcC
Confidence 67776666777776654433
No 134
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.07 E-value=2.8e-13 Score=152.81 Aligned_cols=135 Identities=14% Similarity=0.020 Sum_probs=90.5
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-------cccccceeEEe----
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ-------ETFTCISGYCE---- 318 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~-------~~~~~~~~yv~---- 318 (829)
+.+.+|+++ + .++|++++|+|||||||||||++|+|...+. +|+|.+.|.+++. ...++.+++.+
T Consensus 154 ~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~l 229 (418)
T 1p9r_A 154 HNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGL 229 (418)
T ss_dssp HHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHH
T ss_pred HHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccccCcCHHHHH
Confidence 344578888 4 4899999999999999999999999954332 4788888776532 11233455544
Q ss_pred -----cCCCC--CCC----CCHHHHHHHhhhhcC----CCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHH
Q 044554 319 -----QNDIH--SPN----VTVYESLLYSAWLRL----PPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEK 383 (829)
Q Consensus 319 -----Q~~~~--~~~----lTV~E~l~f~a~lr~----~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGe 383 (829)
|++.. ... .|+.+++.++..-++ ....+.. +.++ .+..+++.+.. .. ..|||||
T Consensus 230 r~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~---~~i~-rL~~lgl~~~~--~~-----~~LSgg~ 298 (418)
T 1p9r_A 230 RAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV---GAVT-RLRDMGIEPFL--IS-----SSLLGVL 298 (418)
T ss_dssp HHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH---HHHH-HHHHHTCCHHH--HH-----HHEEEEE
T ss_pred HHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH---HHHH-HHHHcCCcHHH--HH-----HHHHHHH
Confidence 87654 233 689999987642110 0011111 2233 45667887643 22 3699999
Q ss_pred HHHHHHHHHhhhCCCcce
Q 044554 384 RKRLTIAVELVANPSIIF 401 (829)
Q Consensus 384 rqRlsIa~aL~~~p~iL~ 401 (829)
+|| ||++|+.+|++..
T Consensus 299 ~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 299 AQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEE--EEEEECTTTCEEE
T ss_pred HHH--hhhhhcCCCCccC
Confidence 999 9999999999865
No 135
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.07 E-value=6.2e-11 Score=122.70 Aligned_cols=129 Identities=20% Similarity=0.285 Sum_probs=73.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC--CCCC---CeeEEEEEEcCeec-Cccc---cccceeEEecCCCCCCCCCHH
Q 044554 260 GAFRPGVLTALMGVSGAGKTTLLDVLAG--RKTS---GYITGNIAISGYPK-KQET---FTCISGYCEQNDIHSPNVTVY 330 (829)
Q Consensus 260 ~~i~~Gei~al~G~sGaGKTTLL~~LaG--~~~~---g~~~G~i~i~G~~~-~~~~---~~~~~~yv~Q~~~~~~~lTV~ 330 (829)
+-+++|++++|+||||||||||++.|++ ...+ +...|.+.+++... .... ..+.+++.+|
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~----------- 87 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS----------- 87 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-----------
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-----------
Confidence 5689999999999999999999999999 3321 01135666665431 0000 0011111111
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHH-HHHHHHhh--hCCCcceecCCCC
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKR-LTIAVELV--ANPSIIFMDEPTS 407 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqR-lsIa~aL~--~~p~iL~LDEPTs 407 (829)
++++.+.+ ....+..+..+ +.-+.+++ .+|+++++|||++
T Consensus 88 -------------------------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 88 -------------------------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp -------------------------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred -------------------------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 11111100 01234443322 22233333 4799999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 408 GLDAR-------A-----AAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 408 GLD~~-------~-----~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
.+|+. + ..++++.|++++++ |.||+++.|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h 172 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQ 172 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 99975 3 34566667776654 889888765
No 136
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.03 E-value=1.2e-10 Score=112.80 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=32.8
Q ss_pred hhCCCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCe-EEEEE
Q 044554 394 VANPSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRT-VLFLL 435 (829)
Q Consensus 394 ~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~t-vllll 435 (829)
+.+|++|++|||++ +|...+..+.++++++.++|++ +++..
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits 122 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGS 122 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 45799999999998 5555588899999998888888 55543
No 137
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.01 E-value=5.1e-13 Score=133.81 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=88.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPE 344 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~ 344 (829)
|++++|+||||||||||+++|++.. .|.+.++|.+.... ...++++|.....+..|++|++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999732 36788888654221 234677776544456688888876543210000
Q ss_pred CCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCC--CHHHHHHHHHHH------HhhhCCCcceecCCCCCCCHHHHHH
Q 044554 345 VDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGL--STEKRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 416 (829)
Q Consensus 345 ~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L--SgGerqRlsIa~------aL~~~p~iL~LDEPTsGLD~~~~~~ 416 (829)
. ..+++.+......+.. +.+ |+|++||+.++. +++.+|+...+|| |||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~~------~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEAL------AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHHH------HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHHH------HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 0011111000000000 123 778888888888 8999999988994 899988877
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 044554 417 FMRTVRNTVDTGRTVLFL 434 (829)
Q Consensus 417 i~~~l~~l~~~g~tvlll 434 (829)
.+.++.+.+.+.+++..
T Consensus 136 -~~~~~~~~~~~~~ii~t 152 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNT 152 (189)
T ss_dssp -HHHHHHTTCCTTSEEEC
T ss_pred -HHHHhhcCCCccEEEeC
Confidence 78887775556666553
No 138
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.93 E-value=4.4e-10 Score=111.47 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=38.6
Q ss_pred hhCCCcceecCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 394 VANPSIIFMDEPTS-GLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 394 ~~~p~iL~LDEPTs-GLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+.+|++|+||||++ ++|......+.+++.+..++|+++++..+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45999999999985 999999999999999988788888887654
No 139
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.92 E-value=1.1e-12 Score=140.14 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=88.4
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc---ccccceeEEecCC-CCCCC
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE---TFTCISGYCEQND-IHSPN 326 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~---~~~~~~~yv~Q~~-~~~~~ 326 (829)
...+++++++.+++| ++|.||||||||||+++|+|.... +.+.++|.+.... ...+.+++++|+. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 346899999999999 999999999999999999996543 6788998765322 1234567788764 45566
Q ss_pred CCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCC
Q 044554 327 VTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPT 406 (829)
Q Consensus 327 lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPT 406 (829)
+++.|++......+ ...+ .+ .+....+... ..|||||+||+.|++++..+|++| ||++
T Consensus 106 i~~~Deid~~~~~r-----~~~~----~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-----SDRE----TG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-----CCCc----ch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 67777765432111 0000 00 1223334443 369999999999999999999986 8774
No 140
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.89 E-value=2.3e-10 Score=123.74 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=67.2
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEE---cCeecCcc-c-cccceeEEecCCCCCC----CCCHH
Q 044554 260 GAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAI---SGYPKKQE-T-FTCISGYCEQNDIHSP----NVTVY 330 (829)
Q Consensus 260 ~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i---~G~~~~~~-~-~~~~~~yv~Q~~~~~~----~lTV~ 330 (829)
+++.+|++++|+||||||||||+|+|+|...+ .+|+|.+ +|+..... . ++...+|+.|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL--RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc--cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 45678999999999999999999999996543 3688888 77665321 1 1222799999987655 6899
Q ss_pred HHHH--Hhh------hhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHH
Q 044554 331 ESLL--YSA------WLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKR 386 (829)
Q Consensus 331 E~l~--f~a------~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqR 386 (829)
|++. |.. .++........+....++++++.++|.+.+.... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 321 1221111111122245889999999986443322 1466777663
No 141
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.88 E-value=1.5e-11 Score=134.94 Aligned_cols=153 Identities=16% Similarity=0.062 Sum_probs=94.6
Q ss_pred CceeeeeeeEEEEeCC-------eEEEEEcCCCCCHHHHHHHHhCCCCC--CeeEEEEEEcCeecCc---cccccceeEE
Q 044554 250 DQLVLLNGVSGAFRPG-------VLTALMGVSGAGKTTLLDVLAGRKTS--GYITGNIAISGYPKKQ---ETFTCISGYC 317 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~G-------ei~al~G~sGaGKTTLL~~LaG~~~~--g~~~G~i~i~G~~~~~---~~~~~~~~yv 317 (829)
++..++++++..+++| +.++|.||||+|||||+++|+|.... ...+|.+..++.+... ...++.+.++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456888999998877 88999999999999999999995311 1234544444433211 0113468999
Q ss_pred ecCCCCCCCCCHHHHHHHhhhhcCCCC-CCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhC
Q 044554 318 EQNDIHSPNVTVYESLLYSAWLRLPPE-VDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVAN 396 (829)
Q Consensus 318 ~Q~~~~~~~lTV~E~l~f~a~lr~~~~-~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~ 396 (829)
+|.+.+.+ ++.|++..........- .......+.++..++.+++.. +++.. ..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce------
Confidence 99877654 78888854432211000 001112233455556666654 44433 37999999998654
Q ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHh
Q 044554 397 PSIIFMDEPTSGLDARAAAIFMRTVRNTVD 426 (829)
Q Consensus 397 p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~ 426 (829)
.+||+.+..++.+.|++.++
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHHH
Confidence 77888889999999998765
No 142
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.87 E-value=2.5e-12 Score=130.46 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=31.8
Q ss_pred HHH-HhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH
Q 044554 389 IAV-ELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTV 425 (829)
Q Consensus 389 Ia~-aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~ 425 (829)
.++ +++.+|++++|||+|+++|..+...|.+.|++..
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~ 153 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAAR 153 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455 6888999999999999999999999988887764
No 143
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.86 E-value=5e-12 Score=146.11 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=58.3
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHH
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYE 331 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 331 (829)
..+++++++.+++|+.++|+|||||||||||++|+|..++. .|.|.++|.+.-.......++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 45789999999999999999999999999999999976543 5888888865211111233455555443223356666
Q ss_pred HHHHh
Q 044554 332 SLLYS 336 (829)
Q Consensus 332 ~l~f~ 336 (829)
++..+
T Consensus 325 ~l~~~ 329 (511)
T 2oap_1 325 LLRAA 329 (511)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 55543
No 144
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.86 E-value=1.3e-09 Score=122.29 Aligned_cols=136 Identities=19% Similarity=0.236 Sum_probs=77.3
Q ss_pred eeeee-EEEEeCCeEEEEEcCCCCCHHHHHHHH--hCCCCC--C-eeEEEEEEcCeecCc-cc---cccceeEEecCCCC
Q 044554 254 LLNGV-SGAFRPGVLTALMGVSGAGKTTLLDVL--AGRKTS--G-YITGNIAISGYPKKQ-ET---FTCISGYCEQNDIH 323 (829)
Q Consensus 254 iL~~v-s~~i~~Gei~al~G~sGaGKTTLL~~L--aG~~~~--g-~~~G~i~i~G~~~~~-~~---~~~~~~yv~Q~~~~ 323 (829)
-||.+ .+-+++|++++|+||||||||||++.| ++..++ | .-.+.+++++..... .. +.+.+++.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---- 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---- 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----
Confidence 34443 367999999999999999999999955 454321 1 113466666643210 00 0111121111
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCH-HHHHHHHHHHHhh--hCCCcc
Q 044554 324 SPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLST-EKRKRLTIAVELV--ANPSII 400 (829)
Q Consensus 324 ~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSg-GerqRlsIa~aL~--~~p~iL 400 (829)
++.||+.+. +..+. .+++.+.-+.+++ .+|+++
T Consensus 242 ----~vleni~~~----------------------------------------~~~~~~~~~~~l~~~~~~l~~~~~~ll 277 (400)
T 3lda_A 242 ----DALNNVAYA----------------------------------------RAYNADHQLRLLDAAAQMMSESRFSLI 277 (400)
T ss_dssp ----HHHHTEEEE----------------------------------------ECCSHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred ----hHhhcEEEe----------------------------------------ccCChHHHHHHHHHHHHHHHhcCCceE
Confidence 122221111 01122 2233333333333 469999
Q ss_pred eecCCCCCCCHHHH------------HHHHHHHHHHHhC-CCeEEEEEec
Q 044554 401 FMDEPTSGLDARAA------------AIFMRTVRNTVDT-GRTVLFLLKR 437 (829)
Q Consensus 401 ~LDEPTsGLD~~~~------------~~i~~~l~~l~~~-g~tvllll~~ 437 (829)
++||||+.+|.... .++++.|++++++ |.|||++.|.
T Consensus 278 VIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 278 VVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp EEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred EecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 99999999996533 6788889888765 8999998875
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.84 E-value=1.5e-09 Score=117.29 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=65.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEE---cCeecCccc--c-ccceeEEecCCC------------
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAI---SGYPKKQET--F-TCISGYCEQNDI------------ 322 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i---~G~~~~~~~--~-~~~~~yv~Q~~~------------ 322 (829)
.+.+|++++|+||||||||||||+|+|...+ .+|+|.+ +|.+..... . .+.+||++|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 3457999999999999999999999997654 3699998 887754321 1 135799999874
Q ss_pred ----CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCc-cchhhhc
Q 044554 323 ----HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELN-TLRKALV 371 (829)
Q Consensus 323 ----~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-~~~~~~v 371 (829)
++|.+|+ ||+.|.. ++ .. .+...+++++++.++|. +..+...
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~~----~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-HV----DEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-SS----SCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-CC----CCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 5788999 9988753 11 11 12234588999999995 6666553
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=2.6e-09 Score=117.08 Aligned_cols=133 Identities=16% Similarity=0.090 Sum_probs=67.1
Q ss_pred EEEEcCCCCCHHHHHHHHhC-CCCCCeeEEEEEEcCeecCc-cccccceeEEecCCCCCCCCCHHHHHHHhhhhcCCCCC
Q 044554 268 TALMGVSGAGKTTLLDVLAG-RKTSGYITGNIAISGYPKKQ-ETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLPPEV 345 (829)
Q Consensus 268 ~al~G~sGaGKTTLL~~LaG-~~~~g~~~G~i~i~G~~~~~-~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~~~~ 345 (829)
+.|.||||+|||||+++|++ ...+. .|++.++|.+... ...++.+++++|.+.+....+ + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG--VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT--CCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC--CCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CCc
Confidence 89999999999999999999 33332 4778888765432 112455788888764321110 0 0 001
Q ss_pred CHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH
Q 044554 346 DSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTV 425 (829)
Q Consensus 346 ~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~ 425 (829)
+.. .+++.++.+....-.+... .+|| +..+|+++++|||++ ||..++..+.+.+++..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333321110001100 2455 788999999999999 99999999999998753
Q ss_pred hCCCeEEEEEec
Q 044554 426 DTGRTVLFLLKR 437 (829)
Q Consensus 426 ~~g~tvllll~~ 437 (829)
.+.+++++.|+
T Consensus 163 -~~~~~Il~t~~ 173 (354)
T 1sxj_E 163 -KNIRLIMVCDS 173 (354)
T ss_dssp -TTEEEEEEESC
T ss_pred -CCCEEEEEeCC
Confidence 35566666543
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.83 E-value=2.9e-11 Score=131.14 Aligned_cols=96 Identities=13% Similarity=0.163 Sum_probs=73.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEE-------------------eCCeEEEEEcCCCCCHHHHHHHHh
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLLDVLA 286 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Gei~al~G~sGaGKTTLL~~La 286 (829)
.++++||++.| ..+++++|+.+ ++|+++||+||||||||||+++|+
T Consensus 37 ~i~~~~v~~~y---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 37 DLSLEEVAEIY---------------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp TCCHHHHHHTH---------------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred ccchHhHHHHH---------------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 36778887655 24788888877 899999999999999999999999
Q ss_pred CCCC--CCeeEEEEEE---cCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhc
Q 044554 287 GRKT--SGYITGNIAI---SGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLR 340 (829)
Q Consensus 287 G~~~--~g~~~G~i~i---~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr 340 (829)
|... + .+|+|.+ +|..... ..++.++++ |+..+.+.+|+.+++.+...++
T Consensus 102 ~~l~~~~--~~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 102 ALLSRWP--EHRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTTST--TCCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHhhCC--CCCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 9532 2 2578888 8876432 223457888 8777778899999998876554
No 148
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.81 E-value=5.6e-09 Score=116.05 Aligned_cols=60 Identities=25% Similarity=0.339 Sum_probs=52.0
Q ss_pred CCCCHHHHHHH------HHHHHhhhC-CCcceecCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEec
Q 044554 377 NGLSTEKRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLKR 437 (829)
Q Consensus 377 ~~LSgGerqRl------sIa~aL~~~-p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~~ 437 (829)
+.+|||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. ++.+|+++.|+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~ 345 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHH 345 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESC
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEECh
Confidence 57999999988 567888999 99999999999999999999999999864 34678777753
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.68 E-value=4.5e-09 Score=113.71 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=73.4
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhh
Q 044554 258 VSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSA 337 (829)
Q Consensus 258 vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a 337 (829)
+++..++|++++|+|+|||||||+++.|++...+. .|++.+.+.+.. +. + ..|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~----r~--~-------------a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTF----RA--A-------------AIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTT----CH--H-------------HHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccc----cH--H-------------HHHH-----
Confidence 44556789999999999999999999999954321 245555443321 00 0 0111
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHH---HHHHHhhhCCCcceecCCCCCCCHHHH
Q 044554 338 WLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 414 (829)
Q Consensus 338 ~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRl---sIa~aL~~~p~iL~LDEPTsGLD~~~~ 414 (829)
.+...+.+++.. ....|+|+.+++ ++++++..+|+++++|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 122334445432 124688999999 89999999999999999974 3344
Q ss_pred HHHHHHHHHHH
Q 044554 415 AIFMRTVRNTV 425 (829)
Q Consensus 415 ~~i~~~l~~l~ 425 (829)
..+++.++++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 150
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.62 E-value=2.4e-09 Score=107.91 Aligned_cols=71 Identities=23% Similarity=0.149 Sum_probs=48.4
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc---cccccceeEEecCCCCCCCCCHHHHHHH
Q 044554 259 SGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ---ETFTCISGYCEQNDIHSPNVTVYESLLY 335 (829)
Q Consensus 259 s~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~~~~~~~lTV~E~l~f 335 (829)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ...++.++|++|++..++.+++.+++..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 56778999999999999999999999999643 23444433221 1224567899998877776676665543
No 151
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.62 E-value=3.6e-08 Score=106.18 Aligned_cols=118 Identities=19% Similarity=0.102 Sum_probs=79.3
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHH
Q 044554 256 NGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLY 335 (829)
Q Consensus 256 ~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f 335 (829)
+++++. +|++++++|+||+||||++..|++.... ..|++.+.+.+.... +.. +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~------~~~-------------~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRP------AAR-------------EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCH------HHH-------------HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccH------hHH-------------HHH--
Confidence 677777 9999999999999999999999995432 125666665443210 000 000
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCC-CCCCCHHHH
Q 044554 336 SAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 414 (829)
Q Consensus 336 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEP-TsGLD~~~~ 414 (829)
....+..++..+.. + .+-+-.+.+|.+|+.+...+++++++||| ++|+|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122234432211 0 12344566788999988899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 044554 415 AIFMRTVRNT 424 (829)
Q Consensus 415 ~~i~~~l~~l 424 (829)
.++.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8888877765
No 152
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.62 E-value=3e-11 Score=128.75 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=81.2
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc---cccccceeEEecCCC-CCCCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ---ETFTCISGYCEQNDI-HSPNV 327 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~~~-~~~~l 327 (829)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ....+.+++++|+.. ..+.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 45789999999999 89999999999999999999654 3677888765321 112234567777643 45677
Q ss_pred CHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCc
Q 044554 328 TVYESLLYSAWLRLPP-EVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSI 399 (829)
Q Consensus 328 TV~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~i 399 (829)
++.|++......+... ....++..+.+++++ ..|||||+||+.+++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 8888874322111100 001112222232222 14789999999999999999987
No 153
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.60 E-value=9.8e-11 Score=121.19 Aligned_cols=39 Identities=31% Similarity=0.233 Sum_probs=22.9
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh-CCCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLA-GRKT 290 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~La-G~~~ 290 (829)
.+..+++|+++++|++++|+||||||||||+++|+ |..+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35789999999999999999999999999999999 9753
No 154
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.58 E-value=4.2e-11 Score=125.66 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=82.5
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc---cccccceeEEecCCC-CCCCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ---ETFTCISGYCEQNDI-HSPNV 327 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~~~-~~~~l 327 (829)
..+++++++.+++| ++|.||||+|||||+++|++... .|.+.++|.+... ....+.+++++|+.. ..+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 35789999999999 99999999999999999999654 3677787765321 111234566777642 45667
Q ss_pred CHHHHHHHhhhhcCCC-CCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCC
Q 044554 328 TVYESLLYSAWLRLPP-EVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEP 405 (829)
Q Consensus 328 TV~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEP 405 (829)
++.|++......+... ....++..+.+++++. .|||||+||+.+++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 7777774322111100 0011222222333322 4788999999999999999987 5665
No 155
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.58 E-value=6.4e-10 Score=131.51 Aligned_cols=161 Identities=15% Similarity=0.112 Sum_probs=98.4
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCC-------
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDI------- 322 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~------- 322 (829)
+...++++++..+++|+.++|+||||+|||||+++|++..... ..|.+.+++.+.+. ....+++++|...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 4567899999999999999999999999999999999965432 23788888876542 3445788876531
Q ss_pred ---------------CCCCCCHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHH
Q 044554 323 ---------------HSPNVTVYESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRL 387 (829)
Q Consensus 323 ---------------~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRl 387 (829)
.+..+++.+|+.....-..+...-.+ ......+ .+|..+..... ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~---L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGA---LLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHH---HHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHh---cCceEEechhh-----cCCccccccccc
Confidence 11222222222111000000000000 0000111 11211111111 136999999999
Q ss_pred HHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHH
Q 044554 388 TIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRN 423 (829)
Q Consensus 388 sIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~ 423 (829)
..++....++.+||+||... |++.....+.+.|++
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 898888877777764
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.58 E-value=4.7e-09 Score=105.08 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHH
Q 044554 385 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNT 424 (829)
Q Consensus 385 qRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l 424 (829)
++..+|++++.+|+++++| ||++|..+..++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999988763
No 157
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.54 E-value=9.9e-10 Score=122.60 Aligned_cols=140 Identities=11% Similarity=0.088 Sum_probs=89.4
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCC----------CCeeEEEEEEcCeecCc----cccccce---eEEecCCCC
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAGRKT----------SGYITGNIAISGYPKKQ----ETFTCIS---GYCEQNDIH 323 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG~~~----------~g~~~G~i~i~G~~~~~----~~~~~~~---~yv~Q~~~~ 323 (829)
.+++|+.++|+|+||||||||+|+|+|... .....|.+.++|..... ...++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999321 11346999998843211 0111222 466777777
Q ss_pred CCCCCHHHHH--HHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCC--Cc
Q 044554 324 SPNVTVYESL--LYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANP--SI 399 (829)
Q Consensus 324 ~~~lTV~E~l--~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p--~i 399 (829)
....+..|++ .|-+.++. ++.++..++..+ +. .+..+||+ .+| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~------------~dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGD------------VDPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSS------------SCHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeeccc------------cCcchhh
Confidence 7777766655 33333221 111222222211 11 12234543 289 99
Q ss_pred ceecCCCCCCCHHHHHHHHHHHHHH-HhCCCeE
Q 044554 400 IFMDEPTSGLDARAAAIFMRTVRNT-VDTGRTV 431 (829)
Q Consensus 400 L~LDEPTsGLD~~~~~~i~~~l~~l-~~~g~tv 431 (829)
+++|||+.++|........+.+++. .+.|.|+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti 177 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTL 177 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999887 6666664
No 158
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.52 E-value=2.3e-08 Score=114.13 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=44.8
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKK 306 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~ 306 (829)
..+|+|+|+++++ |+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEcc
Confidence 3579999999999 99999999999999999999996443 2588899998653
No 159
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.48 E-value=7.2e-09 Score=107.22 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=32.4
Q ss_pred hCCCcceecCCCCCC--CHHHHHHHHHHHHHHH-hCCCeEEEEEec
Q 044554 395 ANPSIIFMDEPTSGL--DARAAAIFMRTVRNTV-DTGRTVLFLLKR 437 (829)
Q Consensus 395 ~~p~iL~LDEPTsGL--D~~~~~~i~~~l~~l~-~~g~tvllll~~ 437 (829)
.+|+++++|||++.+ |.....+++..+.+++ +.|.||+++.|.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~ 172 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQV 172 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 479999999999988 5545556666666655 568899888764
No 160
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.40 E-value=6.5e-10 Score=123.58 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=80.5
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCC-CCCCCHH
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIH-SPNVTVY 330 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~-~~~lTV~ 330 (829)
..+|+++|+.+++|++++|.||||||||||+++|+|.. .|++...+.+. ..++..+++++|...+ +.+.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 46899999999999999999999999999999999853 24444312111 1122235677776532 2222221
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHH---cCCcc-ch---hhhc--c--CCCCCCCCHHHHHHHHHHHHhhhCCCc
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMEL---VELNT-LR---KALV--G--LPGLNGLSTEKRKRLTIAVELVANPSI 399 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~---l~L~~-~~---~~~v--g--~~~~~~LSgGerqRlsIa~aL~~~p~i 399 (829)
..+ ..+.... ........+.+.++- ..+.. .. +.+. | +.....+++|+++|+..+++++.+|++
T Consensus 229 ~~~----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGE----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTT----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHH----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 110 0001000 000001122333320 00110 00 1000 0 012345899999999998888899998
Q ss_pred ce-ecCCCC
Q 044554 400 IF-MDEPTS 407 (829)
Q Consensus 400 L~-LDEPTs 407 (829)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 76 999986
No 161
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.35 E-value=2.1e-07 Score=93.31 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=32.4
Q ss_pred HHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHHHHHH
Q 044554 387 LTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTVRNTV 425 (829)
Q Consensus 387 lsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~ 425 (829)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35588999999999999 99999999999998887754
No 162
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.34 E-value=4.6e-07 Score=99.77 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 260 GAFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 260 ~~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
+-+++|+++.|.||||+|||||+..++.
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999999888875
No 163
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.27 E-value=9.7e-07 Score=100.67 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=93.3
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEE-EEEEcCeecCccccc-cceeEEecCCCCCCCCCH
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITG-NIAISGYPKKQETFT-CISGYCEQNDIHSPNVTV 329 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G-~i~i~G~~~~~~~~~-~~~~yv~Q~~~~~~~lTV 329 (829)
...||++.+-+++|+++.|.|+||+|||||+..+++..... .| .+.+-+......... |..+...+ ...
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH
Confidence 45788888889999999999999999999999998742210 11 222222111111111 10000000 000
Q ss_pred HHHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhh--hCCCcceecCCCC
Q 044554 330 YESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELV--ANPSIIFMDEPTS 407 (829)
Q Consensus 330 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~--~~p~iL~LDEPTs 407 (829)
+.+ +. ...+.++. +++.+.++.++..++. +.+ ..++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~l------~~-g~l~~~~~-~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QNL------RT-GKLTPEDW-GKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HHH------HT-SCCCHHHH-HHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HHH------hc-CCCCHHHH-HHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 011 11 12333322 3344555555433221 111 2369999987 5667666 6899999999998
Q ss_pred CCC--------HHHHHHHHHHHHHHHhC-CCeEEEEEe
Q 044554 408 GLD--------ARAAAIFMRTVRNTVDT-GRTVLFLLK 436 (829)
Q Consensus 408 GLD--------~~~~~~i~~~l~~l~~~-g~tvllll~ 436 (829)
..+ .....++.+.|++++++ |.+|+++.|
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 774 23446788888888865 888888865
No 164
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.26 E-value=6e-07 Score=99.41 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=86.4
Q ss_pred CCeE-EEEEcCCCCCHHHHHHHHhCCCCC---------CeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHH---
Q 044554 264 PGVL-TALMGVSGAGKTTLLDVLAGRKTS---------GYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVY--- 330 (829)
Q Consensus 264 ~Gei-~al~G~sGaGKTTLL~~LaG~~~~---------g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~--- 330 (829)
+|-. ++|+|++|||||||+|.|+|.... +...|.+.++|.+.. +....|++.|.+ ...|.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHH
Confidence 3444 999999999999999999995321 134588999886532 222345554422 11121
Q ss_pred HHHHHhh--hh--c-C-CCCCC--HHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHH----HHh-hhCC
Q 044554 331 ESLLYSA--WL--R-L-PPEVD--SQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIA----VEL-VANP 397 (829)
Q Consensus 331 E~l~f~a--~l--r-~-~~~~~--~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa----~aL-~~~p 397 (829)
.++.... .+ . . ..+.. ..+..+.+.++++.+++.+..-.++++. ..-+|+|+++|+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 1121110 00 0 0 01111 1223344567777777655432222221 224677888888887 454 3344
Q ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHh
Q 044554 398 SIIFMDEPTSGLDARAAAIFMRTVRNTVD 426 (829)
Q Consensus 398 ~iL~LDEPTsGLD~~~~~~i~~~l~~l~~ 426 (829)
++ +|+|++|......+.+.|.+...
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 44 89999999999999999987653
No 165
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.22 E-value=2e-08 Score=115.47 Aligned_cols=160 Identities=10% Similarity=0.080 Sum_probs=89.4
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhC----CCCCCeeEEEEEEcCeecCccccccceeEEecCCCCC-C-CCCHH
Q 044554 257 GVSGAFRPGVLTALMGVSGAGKTTLLDVLAG----RKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHS-P-NVTVY 330 (829)
Q Consensus 257 ~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG----~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~-~-~lTV~ 330 (829)
.+++++..|..++|.|++||||||+||.|.. +.++ |++.+.+.+.+...+.. | .+-+.+. + --.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p----~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP----EDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT----TTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC----ceEEEEEECCchhhhhh---h-ccCCcccceeecCHH
Confidence 4778888999999999999999999999875 2333 34444444433222211 0 0001000 0 01122
Q ss_pred HHHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhh--hccCCCCCCCCHHHHHHH----------HHHHHhhhCCC
Q 044554 331 ESLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKA--LVGLPGLNGLSTEKRKRL----------TIAVELVANPS 398 (829)
Q Consensus 331 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~--~vg~~~~~~LSgGerqRl----------sIa~aL~~~p~ 398 (829)
+....-.++ .++.+++ .+.++..|+.++.+. .+. ..+|+||+||. .+++++...|.
T Consensus 231 ~a~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 231 DAANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCc
Confidence 211111110 1222223 367778887766542 111 13677776642 35566777898
Q ss_pred -cceecCCCCCCCHHHHHHHHHHHHHHHhC----CCeEEEEEec
Q 044554 399 -IIFMDEPTSGLDARAAAIFMRTVRNTVDT----GRTVLFLLKR 437 (829)
Q Consensus 399 -iL~LDEPTsGLD~~~~~~i~~~l~~l~~~----g~tvllll~~ 437 (829)
++++||+++-+|.. ...+.+.+.++++. |.++++..++
T Consensus 299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQr 341 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQR 341 (512)
T ss_dssp EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESC
T ss_pred EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecC
Confidence 78999999988843 35566667666554 5567776665
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.22 E-value=6.6e-08 Score=97.58 Aligned_cols=59 Identities=24% Similarity=0.167 Sum_probs=39.2
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc--ccccceeEEecCCCC
Q 044554 259 SGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE--TFTCISGYCEQNDIH 323 (829)
Q Consensus 259 s~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~--~~~~~~~yv~Q~~~~ 323 (829)
....++|++++|+||||||||||+++|++.. |.+.++|.+.... ..+...++++|+...
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDR 83 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCccc
Confidence 3556789999999999999999999999854 5677877654321 112235777776433
No 167
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.18 E-value=3.2e-06 Score=90.95 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=62.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHHHHHHhhhhcCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYESLLYSAWLRLP 342 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~a~lr~~ 342 (829)
++|++++++|+|||||||+++.|++..... .| +.+.++.+|.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 479999999999999999999999854210 12 13566666542 345555554322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCHHHHHHHHHHH
Q 044554 343 PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIFMRTV 421 (829)
Q Consensus 343 ~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~~~~~~i~~~l 421 (829)
+..++... ...+. +.-|.+++ .+.+|+++|+| |+|+|+.....+.++.
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~ 205 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELK 205 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHH
Confidence 11222110 01122 23344555 45899999999 9999987665444433
No 168
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.17 E-value=4.4e-08 Score=101.37 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=37.8
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCc-----------cccccceeEEecC
Q 044554 259 SGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQ-----------ETFTCISGYCEQN 320 (829)
Q Consensus 259 s~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~-----------~~~~~~~~yv~Q~ 320 (829)
++++.+ ++++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 466666 89999999999999999999995433 24777777765411 1124568888884
No 169
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.04 E-value=4e-06 Score=91.71 Aligned_cols=128 Identities=13% Similarity=0.198 Sum_probs=81.9
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHH
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYE 331 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 331 (829)
..-||.+.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSl------Ems~~q 88 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSL------EMSAEQ 88 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEES------SSCHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeC------CCCHHH
Confidence 3457777778999999999999999999999888753210 11 11333321 233322
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCH
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA 411 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~ 411 (829)
-. .+.......+++.++.+ | .||.+|++|++.|...+.++++.+.|+|...
T Consensus 89 l~------------------~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--- 139 (338)
T 4a1f_A 89 LA------------------LRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--- 139 (338)
T ss_dssp HH------------------HHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC---
T ss_pred HH------------------HHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc---
Confidence 21 11222222233333332 2 5999999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHhC--CCeEEEE
Q 044554 412 RAAAIFMRTVRNTVDT--GRTVLFL 434 (829)
Q Consensus 412 ~~~~~i~~~l~~l~~~--g~tvlll 434 (829)
..+|...++++.++ |..+|++
T Consensus 140 --i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 140 --IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp --HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred --HHHHHHHHHHHHHhcCCCCEEEE
Confidence 33666777777654 4555443
No 170
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.04 E-value=2.7e-07 Score=96.90 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=35.7
Q ss_pred eEEEEee-EEEEeCCccccCCCCCCCceeeeeeeEEEEeC---CeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 226 SITFDDI-TYSVDMPQEMINPGVSEDQLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 226 ~l~~~~l-s~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++++|+ +++|. +++.+|+|+|+++++ |+.++|+|+|||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 88772 235699999999999 9999999999999999999999843
No 171
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.96 E-value=3.1e-06 Score=84.99 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=26.3
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAGRKT 290 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG~~~ 290 (829)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999763
No 172
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.96 E-value=1.2e-05 Score=88.60 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcceec-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 377 NGLSTEKRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 377 ~~LSgGerqRlsIa~aL~~~p~iL~LD-EPTsGLD~~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
..+|++|+|++. +.+...++-++++| +|++|+|......+++.+++... +..++++..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~N 288 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVIN 288 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEEC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 368999998876 55555677788999 99999999998888888777654 677777774
No 173
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.92 E-value=6e-08 Score=111.55 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=80.5
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc---ccccceeEEecCCC-CCCCCC
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE---TFTCISGYCEQNDI-HSPNVT 328 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~---~~~~~~~yv~Q~~~-~~~~lT 328 (829)
.+++++++.+++| +.|.||||+|||||+++|++... .+.+.++|.+.... ...+.+..++|+.. ..|...
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4678888889999 89999999999999999999654 35677888654321 11223455666543 345555
Q ss_pred HHHHHHHhhhhcCC-CCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCC
Q 044554 329 VYESLLYSAWLRLP-PEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTS 407 (829)
Q Consensus 329 V~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTs 407 (829)
+.|++......+.. .....++..+.+++++. .+||||+|+..|+++...+|++ |||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 55555322111110 00112233333444443 3667778888888888888987 788753
No 174
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.88 E-value=4.8e-06 Score=91.67 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=29.4
Q ss_pred eeeeeE--EEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 254 LLNGVS--GAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 254 iL~~vs--~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
-||.+- +-+++|+++.|.||||||||||+..+++.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345443 36899999999999999999999999974
No 175
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.86 E-value=5.3e-06 Score=83.42 Aligned_cols=40 Identities=28% Similarity=0.124 Sum_probs=24.5
Q ss_pred CceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 250 DQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 250 ~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+....++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999999999999999999999999753
No 176
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.85 E-value=6.1e-07 Score=104.42 Aligned_cols=43 Identities=35% Similarity=0.438 Sum_probs=33.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEE-EEE-EcCeec
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITG-NIA-ISGYPK 305 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G-~i~-i~G~~~ 305 (829)
.+++|++++|+|+||||||||+++|+|+..+. .| ++. ++|.+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcHH
Confidence 47899999999999999999999999964321 23 564 777543
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.80 E-value=1.7e-06 Score=95.46 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=27.2
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
..+|+++++.++ .++|+|++|||||||+|.|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 357889998888 8999999999999999999994
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.80 E-value=9.2e-06 Score=80.08 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=29.9
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 256 NGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 256 ~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999 9999999999999999999874
No 179
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.76 E-value=1.6e-05 Score=90.81 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhCCCcceecCC----------CCCCCHHHHHHHHHHHHHHH
Q 044554 381 TEKRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIFMRTVRNTV 425 (829)
Q Consensus 381 gGerqRlsIa~aL~~~p~iL~LDEP----------TsGLD~~~~~~i~~~l~~l~ 425 (829)
+++++|-.++++....|.+||+||+ ++|.|......+.+++..+-
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld 147 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMD 147 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHh
Confidence 5677888888888889999999999 34677766666666666653
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.76 E-value=8e-06 Score=97.45 Aligned_cols=30 Identities=33% Similarity=0.317 Sum_probs=25.2
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 259 SGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 259 s~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
|+.+++|+.++|+|++|+|||||++.|++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 345788999999999999999999999974
No 181
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.71 E-value=3.6e-06 Score=88.24 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=43.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHh---CCCCCCeeEEEEE--------EcCeecCc----cccccceeEEecCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLA---GRKTSGYITGNIA--------ISGYPKKQ----ETFTCISGYCEQND 321 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~La---G~~~~g~~~G~i~--------i~G~~~~~----~~~~~~~~yv~Q~~ 321 (829)
++|++++|+|||||||||++++|+ |.... .+|.+. .+|.+... ..+++.+++++|++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 76432 357777 77876532 13455678888754
No 182
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.71 E-value=4.6e-06 Score=90.72 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=52.1
Q ss_pred eeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCcc-------cc-----ccceeEE-ecC
Q 044554 254 LLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQE-------TF-----TCISGYC-EQN 320 (829)
Q Consensus 254 iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~-------~~-----~~~~~yv-~Q~ 320 (829)
+++++++..++|++++++|+||+||||++..|++.... ..|++.+.+.+.... .+ +..+.++ .|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 34688888999999999999999999999999995322 136677766654321 11 3456777 565
Q ss_pred CCCCCCCCHHHHHH
Q 044554 321 DIHSPNVTVYESLL 334 (829)
Q Consensus 321 ~~~~~~lTV~E~l~ 334 (829)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444334444443
No 183
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.71 E-value=4.2e-06 Score=84.27 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=39.5
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEE--EEcCeec
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNI--AISGYPK 305 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i--~i~G~~~ 305 (829)
....+.++...++|++++|+||||||||||+++|+++... .|.+ .++|.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ---KGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh---cCceEEEecCchh
Confidence 4456677777799999999999999999999999996421 2444 6776544
No 184
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.70 E-value=1.1e-05 Score=80.20 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRKT 290 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~~ 290 (829)
|++++|+||||||||||+++|+|..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999654
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.69 E-value=1.5e-05 Score=78.91 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=29.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEc
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAIS 301 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~ 301 (829)
.+|++++|+||||||||||++.|++..++. ..|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~-~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR-FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT-EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc-EEEeeecc
Confidence 368999999999999999999999964321 23544443
No 186
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.66 E-value=1.1e-05 Score=83.10 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=33.4
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 260 GAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 260 ~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
...++|++++|.|+||||||||+++|+|. .|++.+++.|.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 34578999999999999999999999997 25677777764
No 187
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.55 E-value=5.3e-05 Score=82.06 Aligned_cols=130 Identities=11% Similarity=0.172 Sum_probs=80.0
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHH
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYE 331 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 331 (829)
..-||++.+-+++|+++.|.|++|+|||||+.-++..... +| ..+.|+.-+ ++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---------~g---------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---------ND---------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---------TT---------CEEEEEESS------SCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEECC------CCHHH
Confidence 3467777777999999999999999999999888752110 01 113343321 33333
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCH
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA 411 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~ 411 (829)
-.. +.......+++.++.+ |. ..||.+|++|+..|...+.++++.+.|+|...
T Consensus 111 l~~------------------R~~~~~~~i~~~~l~~---~~---~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NIK------------------RLIVTAGSINAQKIKA---AR---RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HHH------------------HHHHHHTTCCHHHHHS---CH---HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HHH------------------HHHHHHcCCCHHHHhc---CC---CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 221 1111111222222221 10 12889999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHhC-CCe--EEEE
Q 044554 412 RAAAIFMRTVRNTVDT-GRT--VLFL 434 (829)
Q Consensus 412 ~~~~~i~~~l~~l~~~-g~t--vlll 434 (829)
..++.+.++++.++ |.. +|++
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVI 187 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMI 187 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 44566667777654 545 5443
No 188
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.53 E-value=4.5e-05 Score=92.47 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcceecCCCC-CCCHHHHHHHHHHHHHHH
Q 044554 378 GLSTEKRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIFMRTVRNTV 425 (829)
Q Consensus 378 ~LSgGerqRlsIa~aL~~~p~iL~LDEPTs-GLD~~~~~~i~~~l~~l~ 425 (829)
-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~ 238 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR 238 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC
Confidence 479999999999999999999999999996 999887777766665543
No 189
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.51 E-value=4.2e-05 Score=77.53 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRKT 290 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~~ 290 (829)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999764
No 190
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.50 E-value=6e-05 Score=75.93 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=26.4
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.+++|++++|+|+||||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999864
No 191
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.30 E-value=0.0004 Score=76.25 Aligned_cols=40 Identities=8% Similarity=0.055 Sum_probs=28.5
Q ss_pred hCCCcceecCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEEE
Q 044554 395 ANPSIIFMDEPTSGLDARAAAIFMRTVRNTVD---TGRTVLFLL 435 (829)
Q Consensus 395 ~~p~iL~LDEPTsGLD~~~~~~i~~~l~~l~~---~g~tvllll 435 (829)
.+|.++++||+... |......+.+.+.+..+ .+.++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~ 166 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVG 166 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEE
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEE
Confidence 45789999999876 88888888777766554 344455444
No 192
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.29 E-value=9.9e-05 Score=72.06 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=29.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCee
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYP 304 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~ 304 (829)
.+|++++|+|+|||||||+++.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999999853 445666544
No 193
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.28 E-value=0.00013 Score=70.08 Aligned_cols=29 Identities=31% Similarity=0.689 Sum_probs=24.0
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 044554 257 GVSGAFRPGVLTALMGVSGAGKTTLLDVLA 286 (829)
Q Consensus 257 ~vs~~i~~Gei~al~G~sGaGKTTLL~~La 286 (829)
+.++++.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344556665 99999999999999999986
No 194
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.23 E-value=0.00012 Score=73.97 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=25.3
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
..+|++++|+||||||||||++.|++..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3489999999999999999999999854
No 195
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.21 E-value=0.00011 Score=71.33 Aligned_cols=26 Identities=35% Similarity=0.305 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.|++++|+|+||||||||+++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999864
No 196
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.08 E-value=0.0023 Score=69.89 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=28.5
Q ss_pred eeeeE-EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 255 LNGVS-GAFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 255 L~~vs-~~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
||.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 5789999999999999999999999887
No 197
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.06 E-value=0.00022 Score=71.67 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=25.6
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|++++|+|+||||||||++.|++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999854
No 198
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.03 E-value=0.0026 Score=68.86 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=28.7
Q ss_pred eeeeeE-EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 254 LLNGVS-GAFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 254 iL~~vs-~~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
-||.+- +-+++|+++.|.||+|+|||||+..++.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 344443 5789999999999999999999998886
No 199
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.02 E-value=4.7e-05 Score=82.66 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=31.7
Q ss_pred ceeeeeeeEEEEeCCe------EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 251 QLVLLNGVSGAFRPGV------LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Ge------i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++.|++++..+..++ ++||+||||||||||+++|++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456667776666665 99999999999999999999853
No 200
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.97 E-value=8.6e-05 Score=81.83 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=43.7
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeee--------------eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+.|+|+++.++ .++..|+ |+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP------------~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHA------------NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESC------------CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCC------------CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 478888888774 2345677 89999999999999999999999999999873
No 201
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.96 E-value=0.002 Score=68.35 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
++.-+.|.||+|+|||||++.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 56678999999999999999999743
No 202
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.93 E-value=0.00099 Score=64.79 Aligned_cols=26 Identities=42% Similarity=0.713 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++|..++|+|++|+|||||+|.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999985
No 203
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.88 E-value=0.0014 Score=73.92 Aligned_cols=25 Identities=40% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++.+++++|++||||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999974
No 204
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.82 E-value=0.001 Score=65.79 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=21.0
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+++++|+..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 5699999999999999999973
No 205
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.82 E-value=0.0006 Score=68.86 Aligned_cols=28 Identities=32% Similarity=0.712 Sum_probs=23.5
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 044554 258 VSGAFRPGVLTALMGVSGAGKTTLLDVLA 286 (829)
Q Consensus 258 vs~~i~~Gei~al~G~sGaGKTTLL~~La 286 (829)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 44556665 99999999999999999885
No 206
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.80 E-value=0.00055 Score=70.56 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=25.8
Q ss_pred eeeeeEEEEe---CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 254 LLNGVSGAFR---PGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 254 iL~~vs~~i~---~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
-|.++|+++. +|.+++|.|++||||||+++.|+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3566677666 89999999999999999999999854
No 207
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.78 E-value=0.0011 Score=75.02 Aligned_cols=40 Identities=23% Similarity=0.472 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC------CC----eeEEEEEEcCeec
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGRKT------SG----YITGNIAISGYPK 305 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~~~------~g----~~~G~i~i~G~~~ 305 (829)
-.++|+|+||+|||||+|.|+|... +| ...|.+.++|.+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 3799999999999999999999532 12 2358888888753
No 208
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.74 E-value=0.00084 Score=76.04 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=33.7
Q ss_pred hCCCcceecCCCCCCCH-HHHHHHHHHHHHHHhCCCeEEEEEe
Q 044554 395 ANPSIIFMDEPTSGLDA-RAAAIFMRTVRNTVDTGRTVLFLLK 436 (829)
Q Consensus 395 ~~p~iL~LDEPTsGLD~-~~~~~i~~~l~~l~~~g~tvllll~ 436 (829)
.+|++|++||+..-.+. .++..+.+.+.++.+.|+.+++..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 38999999999887664 6778888999888877887777654
No 209
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.71 E-value=0.00071 Score=66.27 Aligned_cols=27 Identities=41% Similarity=0.409 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999853
No 210
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.69 E-value=0.00068 Score=68.80 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCCCC-eeEEEEEE--------cCeecCc----cccccceeEEecCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRKTSG-YITGNIAI--------SGYPKKQ----ETFTCISGYCEQND 321 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~~~g-~~~G~i~i--------~G~~~~~----~~~~~~~~yv~Q~~ 321 (829)
+.+++|+|||||||||+.++|++...-. ...|++.. +|.+... ...++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999843111 12366555 5654431 12345567777753
No 211
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.64 E-value=0.0031 Score=71.37 Aligned_cols=128 Identities=17% Similarity=0.218 Sum_probs=75.2
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeecCccccccceeEEecCCCCCCCCCHHH
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPKKQETFTCISGYCEQNDIHSPNVTVYE 331 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 331 (829)
..-||.+.+-+++|+++.|.|++|+|||||..-++...... +| ..+.|+.-+ ++..+
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--------~g---------~~vl~~slE------~~~~~ 243 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--------EG---------VGVGIYSLE------MPAAQ 243 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--------TC---------CCEEEEESS------SCHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------CC---------CeEEEEECC------CCHHH
Confidence 34577777779999999999999999999998888632100 01 113333221 22222
Q ss_pred HHHHhhhhcCCCCCCHHHHHHHHHHHHHHcCCccchhhhccCCCCCCCCHHHHHHHHHHHHhhhCCCcceecCCCCCCCH
Q 044554 332 SLLYSAWLRLPPEVDSQTRKMFIEEVMELVELNTLRKALVGLPGLNGLSTEKRKRLTIAVELVANPSIIFMDEPTSGLDA 411 (829)
Q Consensus 332 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGerqRlsIa~aL~~~p~iL~LDEPTsGLD~ 411 (829)
-. .+.......+.+..+.+ ..|+.++.+|+.-|...+.+.++.+.|+|. ++.
T Consensus 244 l~------------------~R~~~~~~~i~~~~l~~--------g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~ 295 (444)
T 2q6t_A 244 LT------------------LRMMCSEARIDMNRVRL--------GQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTL 295 (444)
T ss_dssp HH------------------HHHHHHHTTCCTTTCCG--------GGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBH
T ss_pred HH------------------HHHHHHHcCCCHHHHhC--------CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH
Confidence 11 11111111122222221 158999999999998888888888888764 333
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEE
Q 044554 412 RAAAIFMRTVRNTVD-TGRTVLF 433 (829)
Q Consensus 412 ~~~~~i~~~l~~l~~-~g~tvll 433 (829)
.++...++++.+ .|..+|+
T Consensus 296 ---~~l~~~~~~l~~~~~~~lIv 315 (444)
T 2q6t_A 296 ---MEVRARARRLVSQNQVGLII 315 (444)
T ss_dssp ---HHHHHHHHHHHHHSCCCEEE
T ss_pred ---HHHHHHHHHHHHHcCCCEEE
Confidence 345556666654 3545444
No 212
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.60 E-value=0.0008 Score=67.57 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=25.3
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34688999999999999999999999754
No 213
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.60 E-value=0.00025 Score=77.63 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=34.1
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+.+++++++..++|.+++|+|++|+|||||++.|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678888889999999999999999999999999984
No 214
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.56 E-value=0.00098 Score=65.84 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=26.3
Q ss_pred eeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 257 GVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 257 ~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++|+...+|..++|+|++||||||+.+.|+.+
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999975
No 215
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.54 E-value=0.00041 Score=69.18 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=31.4
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
..+++++|+..++++ ++++|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 457889998888885 689999999999999999973
No 216
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.51 E-value=0.00036 Score=81.18 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=38.2
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCe
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGY 303 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~ 303 (829)
..+++++++.+ +|+.++|+||||+|||||+++|++.... ..|.+.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~--~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR--KFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC--EEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC--CeEEEEeccc
Confidence 34677777777 8999999999999999999999995432 2567766664
No 217
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.51 E-value=0.0012 Score=66.19 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 044554 267 LTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG 287 (829)
+++|+|+|||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 218
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.40 E-value=0.00012 Score=80.91 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=32.5
Q ss_pred eEEEEeeEEEEeCCccccCCCCCCCceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 226 SITFDDITYSVDMPQEMINPGVSEDQLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 226 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+.++|++..+ +++.+++++++.| +|+|+||+|||||+|.|.|.
T Consensus 17 ~v~~~~l~~~~-------------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQV-------------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ----CCHHHHH-------------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eEEeccchHHh-------------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 46666666544 3456788888877 99999999999999999885
No 219
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.33 E-value=0.0036 Score=64.25 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
..|+.+++.||+||||||++..+..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 5689999999999999999887754
No 220
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.31 E-value=0.0016 Score=71.32 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++.+++|+|++|||||||+|.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
No 221
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.29 E-value=0.0021 Score=70.99 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=26.9
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 044554 255 LNGVSGAFRPGVLTALMGVSGAGKTTLLDVLA 286 (829)
Q Consensus 255 L~~vs~~i~~Gei~al~G~sGaGKTTLL~~La 286 (829)
+++.++++.+| +++|.|+|||||||+|++|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35677777776 99999999999999999986
No 222
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.29 E-value=0.0015 Score=65.12 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 044554 267 LTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG 287 (829)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 223
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.23 E-value=0.0048 Score=60.08 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 224
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.16 E-value=0.0022 Score=63.18 Aligned_cols=38 Identities=37% Similarity=0.346 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC-CCCeeEEEEEEcCe
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGRK-TSGYITGNIAISGY 303 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~~-~~g~~~G~i~i~G~ 303 (829)
.+++|+|+||||||||++.|.+.. ..|..-|.+..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 478999999999999999999842 12222356665543
No 225
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.12 E-value=0.0019 Score=69.24 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHhh--hCCCcceecCCCCCCCHHH-HHHHHHHHHHHHhC
Q 044554 379 LSTEKRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIFMRTVRNTVDT 427 (829)
Q Consensus 379 LSgGerqRlsIa~aL~--~~p~iL~LDEPTsGLD~~~-~~~i~~~l~~l~~~ 427 (829)
+|.|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~ 145 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQ 145 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTT
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHh
Confidence 898886 4566665 67888888 7888876 66777888888764
No 226
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.09 E-value=0.0026 Score=62.58 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
++|.++.|+|++||||||+.+.|++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999853
No 227
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.09 E-value=0.0029 Score=60.79 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 228
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.03 E-value=0.0025 Score=64.28 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=25.6
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+++|.+++|+|++||||||+.+.|++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999999854
No 229
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.01 E-value=0.0031 Score=61.76 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 230
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.98 E-value=0.0025 Score=63.60 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
..+++|+|+|||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999753
No 231
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.97 E-value=0.00074 Score=73.93 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=32.4
Q ss_pred eeeeeeEEEEeCCeE--EEEEcCCCCCHHHHHHHHhCC
Q 044554 253 VLLNGVSGAFRPGVL--TALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei--~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++++..+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 477888888899988 999999999999999999984
No 232
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.91 E-value=0.011 Score=64.98 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=28.2
Q ss_pred eeeeeE--EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 254 LLNGVS--GAFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 254 iL~~vs--~~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
-||.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455543 3589999999999999999999988875
No 233
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.90 E-value=0.004 Score=60.47 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRKT 290 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~~ 290 (829)
|.++.|+|+|||||||+.+.|+.+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998543
No 234
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.87 E-value=0.0039 Score=59.95 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++|+|++||||||+.+.|+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 235
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.76 E-value=0.0044 Score=60.63 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999985
No 236
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.76 E-value=0.00088 Score=72.87 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=33.8
Q ss_pred ceeeeeeeEEEEeCCeE--EEEEcCCCCCHHHHHHHHhCC
Q 044554 251 QLVLLNGVSGAFRPGVL--TALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei--~al~G~sGaGKTTLL~~LaG~ 288 (829)
+..+++.++..++.|++ +.+.||+|+||||+++++++.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45678888888899998 999999999999999999985
No 237
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.73 E-value=0.0044 Score=63.63 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.1
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+-++|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999999973
No 238
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.61 E-value=0.0055 Score=60.18 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++|.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999863
No 239
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.59 E-value=0.0059 Score=59.70 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
|.++.|.|++||||||+.+.|+.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999863
No 240
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.59 E-value=0.0056 Score=63.22 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~ 288 (829)
-+++|.|||||||||+.+.|+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999954
No 241
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.55 E-value=0.004 Score=64.56 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=22.6
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 256 NGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 256 ~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+++++..++| +.|.||+|+|||||+++|++..
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 3344444455 8899999999999999999853
No 242
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.53 E-value=0.0048 Score=68.63 Aligned_cols=29 Identities=28% Similarity=0.621 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 260 GAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 260 ~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+.++.|..++|+|+||+|||||+|.|+|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 35678889999999999999999999995
No 243
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.41 E-value=0.0065 Score=63.33 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999753
No 244
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.40 E-value=0.007 Score=68.51 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=30.0
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
.-||.+.+-+++|+++.|.|++|+|||||.--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 45666666789999999999999999999887775
No 245
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.39 E-value=0.0029 Score=65.88 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=26.1
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAGRKT 290 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG~~~ 290 (829)
..+++.++.|+|+|||||||+.+.|+....
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456788999999999999999999998643
No 246
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.37 E-value=0.008 Score=58.79 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++..+.|+|++||||||+.+.|+.+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999864
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.36 E-value=0.0072 Score=60.21 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999997643
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.30 E-value=0.0083 Score=57.37 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 044554 267 LTALMGVSGAGKTTLLDVL 285 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~L 285 (829)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 249
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.27 E-value=0.0093 Score=60.15 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 250
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.20 E-value=0.0098 Score=58.97 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+|.+++|.|++||||||+.+.|+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 251
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.18 E-value=0.011 Score=58.92 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+|.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4778999999999999999999974
No 252
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.18 E-value=0.0094 Score=58.92 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+++|.|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999743
No 253
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.17 E-value=0.0087 Score=58.38 Aligned_cols=25 Identities=40% Similarity=0.352 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999853
No 254
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.14 E-value=0.0091 Score=61.18 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||+|.|+|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47999999999999999999954
No 255
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.14 E-value=0.01 Score=59.16 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999863
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.04 E-value=0.012 Score=56.96 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG 287 (829)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 257
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.00 E-value=0.0084 Score=67.36 Aligned_cols=46 Identities=22% Similarity=0.047 Sum_probs=34.7
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCeeEEEEEEcCeec
Q 044554 256 NGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTSGYITGNIAISGYPK 305 (829)
Q Consensus 256 ~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~~~g~~~G~i~i~G~~~ 305 (829)
+++++. +|++++++|+|||||||++..|++..... .+.+.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc
Confidence 567777 89999999999999999999999953221 25566655443
No 258
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.99 E-value=0.011 Score=62.96 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
..|.++.|.|||||||||+.+.|+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998744
No 259
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.99 E-value=0.011 Score=58.12 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999853
No 260
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.95 E-value=0.0054 Score=65.71 Aligned_cols=33 Identities=33% Similarity=0.223 Sum_probs=28.3
Q ss_pred ee-eEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 256 NG-VSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 256 ~~-vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
++ +++..+ |++++++|++|+||||++..|++..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34 666666 9999999999999999999999843
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.94 E-value=0.0059 Score=61.11 Aligned_cols=23 Identities=52% Similarity=0.765 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+++|.|++||||||+++.|+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999754
No 262
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.94 E-value=0.012 Score=58.71 Aligned_cols=26 Identities=42% Similarity=0.497 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++|.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999863
No 263
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.90 E-value=0.012 Score=57.18 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++||||||+.+.|+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999964
No 264
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.83 E-value=0.011 Score=61.89 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999953
No 265
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.83 E-value=0.014 Score=57.66 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999975
No 266
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.76 E-value=0.014 Score=57.08 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
++.|.|++||||||+.+.|+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 267
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.74 E-value=0.014 Score=57.30 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++|+|++|||||||++.|++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999874
No 268
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.72 E-value=0.016 Score=56.60 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG 287 (829)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999985
No 269
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.67 E-value=0.026 Score=60.66 Aligned_cols=37 Identities=32% Similarity=0.294 Sum_probs=32.5
Q ss_pred ceeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 251 QLVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 251 ~~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
....+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 356888887777 8999999999999999999999875
No 270
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.56 E-value=0.016 Score=54.94 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999999853
No 271
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.54 E-value=0.014 Score=57.60 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++.+++|.|++||||||+.+.|+.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 272
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.53 E-value=0.019 Score=58.03 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++|..+.|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 273
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.47 E-value=0.018 Score=54.86 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4799999999999999999984
No 274
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.016 Score=56.67 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999854
No 275
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.45 E-value=0.028 Score=54.10 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG 287 (829)
-.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999986
No 276
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.019 Score=54.39 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999984
No 277
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.42 E-value=0.037 Score=54.10 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 044554 267 LTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG 287 (829)
.++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999987766
No 278
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.42 E-value=0.017 Score=54.66 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 279
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.34 E-value=0.045 Score=51.87 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 280
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.31 E-value=0.021 Score=56.06 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++|.|++||||||+.+.|+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 281
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.29 E-value=0.021 Score=54.13 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999874
No 282
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.29 E-value=0.02 Score=54.79 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999984
No 283
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.29 E-value=0.011 Score=71.99 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=27.6
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAGRKT 290 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG~~~ 290 (829)
.+++|+.++|.||||+|||||+++|++...
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999753
No 284
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.28 E-value=0.021 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 285
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.27 E-value=0.018 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999874
No 286
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.26 E-value=0.02 Score=55.79 Aligned_cols=22 Identities=50% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 287
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.25 E-value=0.02 Score=56.80 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++|.|++||||||+.+.|+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999874
No 288
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.25 E-value=0.018 Score=61.35 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=25.1
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
++++.-+.|.||+|+|||||.++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 5678889999999999999999999854
No 289
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.25 E-value=0.019 Score=53.99 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 290
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.24 E-value=0.019 Score=54.02 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999974
No 291
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.21 E-value=0.022 Score=57.87 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=21.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++.+++|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999864
No 292
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.20 E-value=0.016 Score=56.28 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=17.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999864
No 293
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.18 E-value=0.023 Score=59.93 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||+|.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
No 294
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.18 E-value=0.022 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999853
No 295
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.15 E-value=0.021 Score=55.72 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
No 296
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.14 E-value=0.024 Score=58.67 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|.+|+|||||+|.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999954
No 297
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.12 E-value=0.028 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999984
No 298
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.09 E-value=0.021 Score=53.90 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 299
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.09 E-value=0.02 Score=54.17 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999999853
No 300
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.08 E-value=0.021 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999974
No 301
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.07 E-value=0.022 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++++|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 302
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.06 E-value=0.027 Score=55.89 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+.+++|+|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999863
No 303
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.05 E-value=0.023 Score=55.22 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999854
No 304
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.02 E-value=0.026 Score=56.59 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 305
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.02 E-value=0.022 Score=54.45 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999974
No 306
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.99 E-value=0.023 Score=54.49 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++++|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998743
No 307
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.96 E-value=0.027 Score=54.99 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 308
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.96 E-value=0.025 Score=54.83 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 044554 268 TALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 268 ~al~G~sGaGKTTLL~~LaG~ 288 (829)
++|+|++|+|||||++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 689999999999999999985
No 309
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.95 E-value=0.029 Score=55.63 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999853
No 310
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.93 E-value=0.024 Score=57.36 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999864
No 311
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.90 E-value=0.023 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999984
No 312
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.89 E-value=0.029 Score=61.60 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
|-.++|+|.+|+|||||+|.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999983
No 313
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.86 E-value=0.031 Score=58.22 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 314
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.86 E-value=0.025 Score=54.37 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++|.|++||||||+.+.|+.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 315
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.84 E-value=0.031 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+.++|.|++||||||+.+.|+.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999863
No 316
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.82 E-value=0.026 Score=53.30 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++++|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999973
No 317
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.81 E-value=0.032 Score=54.41 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999853
No 318
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.78 E-value=0.029 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999974
No 319
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.77 E-value=0.031 Score=56.10 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999853
No 320
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.77 E-value=0.032 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 321
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.75 E-value=0.026 Score=55.09 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+++|+|++||||||+.+.|+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 322
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.74 E-value=0.027 Score=54.89 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999985
No 323
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.74 E-value=0.027 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++++|++|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999974
No 324
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.73 E-value=0.051 Score=54.57 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=28.5
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
..++..-.. ..|..++|+||+|+|||||...|+.+.
T Consensus 23 ~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 355555444 467899999999999999999999753
No 325
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.69 E-value=0.028 Score=59.03 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999884
No 326
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.68 E-value=0.028 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999974
No 327
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.67 E-value=0.028 Score=54.90 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999984
No 328
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.67 E-value=0.029 Score=52.92 Aligned_cols=20 Identities=40% Similarity=0.512 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 044554 268 TALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 268 ~al~G~sGaGKTTLL~~LaG 287 (829)
++++|++|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999987
No 329
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.63 E-value=0.036 Score=57.19 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
No 330
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.61 E-value=0.036 Score=59.28 Aligned_cols=25 Identities=40% Similarity=0.654 Sum_probs=22.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+.| .++|+|.+|+|||||+|.|.|.
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCC
Confidence 345 5899999999999999999995
No 331
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.55 E-value=0.029 Score=53.57 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999873
No 332
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.55 E-value=0.03 Score=55.33 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 044554 267 LTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG 287 (829)
.++|+|++|+|||||++.++|
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999986
No 333
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.51 E-value=0.031 Score=53.56 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999974
No 334
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.49 E-value=0.032 Score=53.71 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999974
No 335
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.46 E-value=0.032 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999743
No 336
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.46 E-value=0.033 Score=58.07 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|.+|||||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999953
No 337
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.43 E-value=0.04 Score=55.48 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++..+.|.||+|+|||||++.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999873
No 338
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.43 E-value=0.038 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+.-.++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999843
No 339
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.41 E-value=0.033 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.|++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999974
No 340
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.41 E-value=0.033 Score=54.12 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRKT 290 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~~ 290 (829)
.++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998543
No 341
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.36 E-value=0.042 Score=58.88 Aligned_cols=23 Identities=43% Similarity=0.679 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|.+|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999953
No 342
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.34 E-value=0.077 Score=52.82 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 343
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.34 E-value=0.034 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999974
No 344
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.30 E-value=0.042 Score=54.81 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
..+++|.|++||||||+.+.|+.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999853
No 345
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.28 E-value=0.041 Score=56.95 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~ 288 (829)
-+++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999873
No 346
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.27 E-value=0.034 Score=53.70 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 347
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.25 E-value=0.035 Score=55.40 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999854
No 348
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.24 E-value=0.036 Score=54.47 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 349
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.20 E-value=0.038 Score=57.19 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 350
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.19 E-value=0.037 Score=53.88 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999984
No 351
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.19 E-value=0.041 Score=53.91 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999984
No 352
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.16 E-value=0.037 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999843
No 353
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.12 E-value=0.036 Score=54.13 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999973
No 354
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.11 E-value=0.039 Score=53.77 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999984
No 355
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.11 E-value=0.037 Score=53.72 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999974
No 356
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.10 E-value=0.045 Score=53.89 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999843
No 357
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.09 E-value=0.038 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999853
No 358
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.08 E-value=0.042 Score=58.45 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|||||||+|.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999953
No 359
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.07 E-value=0.036 Score=61.06 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 044554 268 TALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 268 ~al~G~sGaGKTTLL~~LaG~ 288 (829)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999983
No 360
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.05 E-value=0.038 Score=54.15 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 361
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.04 E-value=0.041 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999974
No 362
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.04 E-value=0.034 Score=60.30 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999984
No 363
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.03 E-value=0.039 Score=56.64 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=21.0
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 262 FRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 262 i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
..+|.++++.|++||||||+.+.|+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999874
No 364
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.01 E-value=0.045 Score=57.11 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|.+|+|||||+|.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 365
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.01 E-value=0.042 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 366
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.99 E-value=0.041 Score=54.17 Aligned_cols=21 Identities=43% Similarity=0.776 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 044554 267 LTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG 287 (829)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999997
No 367
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.98 E-value=0.045 Score=55.21 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+|-.+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999999864
No 368
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.96 E-value=0.026 Score=56.59 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||+|.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 369
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.95 E-value=0.047 Score=55.20 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.+.+..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
No 370
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.95 E-value=0.044 Score=57.67 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|.+|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999954
No 371
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.93 E-value=0.051 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++++|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 372
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.90 E-value=0.026 Score=60.06 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=18.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG 287 (829)
+-+++|.||+||||||+.+.|+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 373
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.90 E-value=0.05 Score=55.18 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.89 E-value=0.056 Score=51.95 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999874
No 375
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.048 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999964
No 376
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.89 E-value=0.044 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999873
No 377
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.88 E-value=0.048 Score=57.73 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
|...+.|.||+|+|||||.+.|++.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHH
Confidence 3467899999999999999999984
No 378
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.88 E-value=0.33 Score=55.51 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=29.4
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
.-||.+.+-+++|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 35666666699999999999999999999877764
No 379
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.87 E-value=0.049 Score=53.18 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999984
No 380
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.87 E-value=0.048 Score=53.89 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999974
No 381
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.86 E-value=0.042 Score=54.25 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5799999999999999999984
No 382
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.86 E-value=0.059 Score=54.63 Aligned_cols=26 Identities=46% Similarity=0.615 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
-+|.++++.|++||||||+.+.|+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999874
No 383
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.85 E-value=0.044 Score=54.88 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.|++.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 384
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.85 E-value=0.047 Score=57.68 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 044554 266 VLTALMGVSGAGKTTLLDVLA 286 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~La 286 (829)
.+++|.|++||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 385
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.78 E-value=0.045 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++++|++|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 386
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.77 E-value=0.044 Score=52.68 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 044554 267 LTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG 287 (829)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999995
No 387
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.77 E-value=0.047 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999974
No 388
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.75 E-value=0.045 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999843
No 389
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.72 E-value=0.045 Score=54.11 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999974
No 390
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.68 E-value=0.049 Score=53.13 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999973
No 391
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.67 E-value=0.049 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999984
No 392
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.67 E-value=0.052 Score=57.15 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|.+|+|||||+|.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999953
No 393
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.64 E-value=0.071 Score=57.88 Aligned_cols=26 Identities=38% Similarity=0.436 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.+.++.|+||+|||||||...|+.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999865
No 394
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.63 E-value=0.056 Score=54.27 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999863
No 395
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.62 E-value=0.05 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 396
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.05 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999974
No 397
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.60 E-value=0.05 Score=53.82 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999974
No 398
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.59 E-value=0.048 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998863
No 399
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.58 E-value=0.06 Score=56.93 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG 287 (829)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 400
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.56 E-value=0.051 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999999743
No 401
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.49 E-value=0.065 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57999999999999999999854
No 402
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.48 E-value=0.069 Score=52.82 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.-+.|.||+|+|||||++.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999973
No 403
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.47 E-value=0.062 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999974
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.44 E-value=0.067 Score=54.53 Aligned_cols=25 Identities=44% Similarity=0.541 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+..+.|+|++||||||+.+.|+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999864
No 405
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.42 E-value=0.058 Score=52.96 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 406
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.40 E-value=0.052 Score=53.91 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 407
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.39 E-value=0.051 Score=60.07 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+.-++|+|+||||||||++.|++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4556899999999999999999983
No 408
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.35 E-value=0.061 Score=53.82 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
No 409
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.34 E-value=0.067 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+|.++++.|++||||||+.+.|+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999874
No 410
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.33 E-value=0.072 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+...++.|+||+||||+|..+.|+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568899999999999999999863
No 411
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.32 E-value=0.065 Score=59.99 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+.+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999999864
No 412
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.30 E-value=0.044 Score=52.59 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999974
No 413
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.26 E-value=0.042 Score=52.93 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=9.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 414
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.25 E-value=0.059 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5799999999999999999874
No 415
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.24 E-value=0.056 Score=53.93 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999984
No 416
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.20 E-value=0.06 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999974
No 417
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.18 E-value=0.061 Score=56.25 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++.-+.|.||+|+|||||++.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999999754
No 418
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.11 E-value=0.041 Score=54.94 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
No 419
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.10 E-value=0.071 Score=57.96 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.+++|+||+|||||||.+.|+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999754
No 420
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.09 E-value=0.066 Score=55.73 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|.+|+|||||+|.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
No 421
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.06 E-value=0.06 Score=55.96 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+++.+++|.|+.||||||+.+.|+...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999999764
No 422
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.06 E-value=0.074 Score=60.20 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=29.1
Q ss_pred eeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 253 VLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 253 ~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++|.+ ..+-.|+..+|+|+||+|||||++.|++.
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 355555 55668999999999999999999999873
No 423
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.04 E-value=0.082 Score=56.80 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999999764
No 424
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.03 E-value=0.061 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999984
No 425
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.03 E-value=0.086 Score=53.89 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+|.++++.|++||||||+.+.|+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999999874
No 426
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.01 E-value=0.077 Score=53.98 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRKT 290 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~~ 290 (829)
++|.++.+.|++||||||+.+.|+....
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999998543
No 427
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.00 E-value=0.089 Score=56.46 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=28.3
Q ss_pred eeeeeE-EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 254 LLNGVS-GAFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 254 iL~~vs-~~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
-||.+- +-+++|+++.|.|++|+|||||..-++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5789999999999999999999988875
No 428
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.00 E-value=0.069 Score=55.81 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999853
No 429
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.95 E-value=0.08 Score=53.69 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+|.++.+.|++||||||+.+.|+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999874
No 430
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.91 E-value=0.058 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999763
No 431
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.90 E-value=0.078 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999973
No 432
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.87 E-value=0.086 Score=53.97 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
|.+++|-|+.||||||+.+.|+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999999754
No 433
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.87 E-value=0.067 Score=51.35 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+..+.|.||+|+|||||++.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 446789999999999999999874
No 434
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.79 E-value=0.088 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.667 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
..++++|.+|+|||||+|.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 578999999999999999999964
No 435
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.73 E-value=0.1 Score=52.91 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=25.5
Q ss_pred eeeeE-EEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 044554 255 LNGVS-GAFRPGVLTALMGVSGAGKTTLLDVLA 286 (829)
Q Consensus 255 L~~vs-~~i~~Gei~al~G~sGaGKTTLL~~La 286 (829)
||++- +=+++|+++.|.|++|+|||||.--++
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 44432 468999999999999999999976543
No 436
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.71 E-value=0.07 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999974
No 437
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.66 E-value=0.059 Score=57.73 Aligned_cols=42 Identities=7% Similarity=0.142 Sum_probs=30.5
Q ss_pred hhCCCcceecCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEE
Q 044554 394 VANPSIIFMDEPTS-GLDARAAAIFMRTVRNTVDTGRTVLFLL 435 (829)
Q Consensus 394 ~~~p~iL~LDEPTs-GLD~~~~~~i~~~l~~l~~~g~tvllll 435 (829)
..++++|++||+-. .-|..+...+...+..+.+.|..+++..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~ 138 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILAS 138 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35699999999865 2344677888888888777776655544
No 438
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.66 E-value=0.19 Score=53.62 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+-.++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998874
No 439
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.66 E-value=0.094 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+.|.||+|+|||||++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999863
No 440
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.60 E-value=0.14 Score=50.28 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=27.7
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+..++..- --..|.-+.|.|+||+|||||...|..+
T Consensus 4 ~~~lHas~-v~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 4 KQTWHANF-LVIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp CEEEESEE-EEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred cEEEEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 34455544 3456889999999999999999988764
No 441
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.58 E-value=0.092 Score=56.71 Aligned_cols=24 Identities=42% Similarity=0.385 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++.|+||+|||||||.+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999754
No 442
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.57 E-value=0.08 Score=53.06 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+.+++|+|++||||||+.+.|+.+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998743
No 443
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.53 E-value=0.08 Score=53.14 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|.+|+|||||++-+++.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999999873
No 444
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.48 E-value=0.35 Score=62.77 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=25.6
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 261 AFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 261 ~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
-+++|+++.|.||+|+|||||+..++.
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~ 754 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIA 754 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHH
Confidence 599999999999999999999999986
No 445
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.36 E-value=0.043 Score=53.91 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=4.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 446
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.29 E-value=0.1 Score=52.54 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
++.|+||+||||+|.-+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999964
No 447
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.27 E-value=0.084 Score=59.72 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||+|.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999984
No 448
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.27 E-value=0.082 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999874
No 449
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.27 E-value=0.086 Score=52.98 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.+.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999984
No 450
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.07 E-value=0.12 Score=55.44 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999754
No 451
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.91 E-value=0.094 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++++|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999863
No 452
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.85 E-value=0.12 Score=53.10 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
..-+.|.||+|+|||||.+.++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999974
No 453
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.80 E-value=0.098 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.284 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999863
No 454
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.75 E-value=0.1 Score=52.17 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 455
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.73 E-value=0.12 Score=57.33 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
-.+++|+||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999999643
No 456
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.44 E-value=0.16 Score=53.78 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999964
No 457
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=90.36 E-value=0.11 Score=56.63 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|.+|+|||||+|.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999953
No 458
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.33 E-value=0.13 Score=55.44 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 260 GAFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 260 ~~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6689999999999999999999999985
No 459
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.14 E-value=0.036 Score=59.74 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHH
Q 044554 396 NPSIIFMDEPTSGLDARAAAIFMRTVRNT 424 (829)
Q Consensus 396 ~p~iL~LDEPTsGLD~~~~~~i~~~l~~l 424 (829)
+++++++|| ...|+......+.+.+.+.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~ 160 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETY 160 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHT
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhc
Confidence 567999999 7789988888887777664
No 460
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.86 E-value=0.17 Score=49.83 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=19.2
Q ss_pred CCeEEEEEcCCCCCHHHHH-HHH
Q 044554 264 PGVLTALMGVSGAGKTTLL-DVL 285 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL-~~L 285 (829)
+|.+..+.||.|+||||++ +++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 4889999999999999997 444
No 461
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.71 E-value=0.052 Score=66.02 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=28.1
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 258 VSGAFRPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 258 vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++.+.+|+.+.|.||||+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35567899999999999999999999999853
No 462
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.69 E-value=0.17 Score=47.47 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+.-+.|.||+|+|||++.+.|+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3445789999999999999999874
No 463
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=89.62 E-value=0.25 Score=54.44 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC-----C----CeeEEEEEEcCee
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRKT-----S----GYITGNIAISGYP 304 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~~-----~----g~~~G~i~i~G~~ 304 (829)
-+||+|.+-+|||||+|.|+|... + .++.|.+.++|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 589999999999999999999421 1 1345888887765
No 464
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=89.58 E-value=0.047 Score=53.75 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999843
No 465
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.49 E-value=0.15 Score=57.25 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|++|+|||||+|.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 466
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.48 E-value=0.17 Score=55.17 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.-.++|+|++|+|||||++.|++.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999999863
No 467
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.40 E-value=0.18 Score=53.22 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++.-+.|.||+|+|||||.+.++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4556899999999999999999873
No 468
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=89.38 E-value=0.16 Score=56.49 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|.+++|||||+|.|+|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999953
No 469
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.36 E-value=0.18 Score=49.56 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 044554 268 TALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 268 ~al~G~sGaGKTTLL~~LaG~ 288 (829)
+.|.||+|+|||||++.++..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 470
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=88.95 E-value=0.069 Score=52.68 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 044554 267 LTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG 287 (829)
.++++|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999999876
No 471
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=89.30 E-value=0.13 Score=58.37 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+|-.++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4555999999999999999999984
No 472
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.27 E-value=0.3 Score=54.80 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.++|+|.+++|||||+|.|+|.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 473
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.23 E-value=0.15 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999974
No 474
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.18 E-value=0.18 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+||+|++||||||+.+.|+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 475
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=89.10 E-value=0.18 Score=58.84 Aligned_cols=26 Identities=42% Similarity=0.741 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+--.++|+|++|+|||||+|.|.|..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 33578999999999999999999964
No 476
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=88.75 E-value=0.087 Score=54.57 Aligned_cols=21 Identities=43% Similarity=0.673 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 044554 268 TALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 268 ~al~G~sGaGKTTLL~~LaG~ 288 (829)
+.|.||+|+|||||.+.|++.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999974
No 477
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.75 E-value=0.13 Score=51.31 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHH-HhC
Q 044554 267 LTALMGVSGAGKTTLLDV-LAG 287 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~-LaG 287 (829)
.++|+|++|+|||||++. +.|
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999998 545
No 478
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=88.72 E-value=0.24 Score=53.94 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=26.2
Q ss_pred eeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 256 NGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 256 ~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+.+.++++----++|+|.++||||||++.|++.
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 445555555446899999999999999999874
No 479
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.65 E-value=0.22 Score=51.72 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+..-+.|.||+|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999974
No 480
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.56 E-value=0.23 Score=53.45 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+|..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345568899999999999999999754
No 481
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.54 E-value=0.71 Score=60.81 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=28.5
Q ss_pred eeeeeEE--EEeCCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 254 LLNGVSG--AFRPGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 254 iL~~vs~--~i~~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
-||.+-+ -+++|+++.|.||+|+|||||..-++.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4565543 699999999999999999999887775
No 482
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=88.41 E-value=0.2 Score=58.04 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 044554 267 LTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 267 i~al~G~sGaGKTTLL~~LaG~~ 289 (829)
.++|+|..|+|||||+|.|.|..
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999954
No 483
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.39 E-value=0.25 Score=55.55 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAG 287 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG 287 (829)
++.+++++|++|+||||++..|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 467999999999999999999996
No 484
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.22 E-value=0.22 Score=52.71 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~ 288 (829)
..+.|.||+|+|||+|.+.|+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45778899999999999999974
No 485
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.22 E-value=0.52 Score=50.53 Aligned_cols=36 Identities=31% Similarity=0.254 Sum_probs=28.6
Q ss_pred eeeeeeeEEEEeCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 252 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 252 ~~iL~~vs~~i~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
...+++. +-...|.-+.|.|+||+|||||.-.|..+
T Consensus 135 ~~~~H~~-~v~~~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 135 VAQIHGV-LLEVFGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp CEEEEEE-EEEETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred cceeEEE-EEEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4567774 44456888999999999999999888754
No 486
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.18 E-value=0.26 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+.-+.|.||+|+|||+|+++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999863
No 487
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.13 E-value=0.25 Score=53.57 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+|..+.|.||+|+|||||.+.++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999974
No 488
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=88.04 E-value=0.2 Score=55.11 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+..++++|.+|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999985
No 489
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.03 E-value=0.23 Score=56.99 Aligned_cols=27 Identities=15% Similarity=0.056 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
+.|..+.|+|.+||||||+-+.|+.+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHH
Confidence 567889999999999999999999854
No 490
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.79 E-value=0.27 Score=52.62 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+..-+.|.||+|+|||+|.+.++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456899999999999999999874
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.69 E-value=0.31 Score=48.94 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
|..+++=|+-||||||+.+.|+.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5678999999999999999998754
No 492
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=87.67 E-value=0.2 Score=55.07 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
++..++++|.+|+|||||+|.|.|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5678999999999999999999985
No 493
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=87.65 E-value=0.27 Score=58.64 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+++-.++|+|++|+|||||+|.|.|.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34557999999999999999999995
No 494
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=87.62 E-value=0.19 Score=57.26 Aligned_cols=25 Identities=48% Similarity=0.735 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.|=.++|+|++|+|||||+|.|+|.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999985
No 495
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=87.59 E-value=0.29 Score=57.48 Aligned_cols=25 Identities=44% Similarity=0.492 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 264 PGVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 264 ~Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.|.++.|.|.+||||||+.+.|+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999874
No 496
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.57 E-value=0.17 Score=56.86 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.+++++|++|+||||+.+.|++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999984
No 497
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.53 E-value=0.25 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 044554 266 VLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 266 ei~al~G~sGaGKTTLL~~LaG~ 288 (829)
.-+.|.||+|+|||||.+.++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999974
No 498
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.35 E-value=0.29 Score=53.19 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+..+.|.||+|+|||||++.++..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 499
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=87.32 E-value=0.3 Score=53.28 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Q 044554 263 RPGVLTALMGVSGAGKTTLLDVLAGRK 289 (829)
Q Consensus 263 ~~Gei~al~G~sGaGKTTLL~~LaG~~ 289 (829)
++..-+.|.||+|+|||||.+.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999743
No 500
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.28 E-value=0.2 Score=46.88 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 044554 265 GVLTALMGVSGAGKTTLLDVLAGR 288 (829)
Q Consensus 265 Gei~al~G~sGaGKTTLL~~LaG~ 288 (829)
+.-+.|.||+|+|||++.+.|+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 445789999999999999999864
Done!