BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044555
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp
pdb|1VD1|A Chain A, Crystal Structure Of Rnase Nt In Complex With 5'-Amp
pdb|1VD3|A Chain A, Ribonuclease Nt In Complex With 2'-ump
Length = 217
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 89/203 (43%), Gaps = 12/203 (5%)
Query: 22 NFDHFLLVQTWPHGYCER-----IPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVS 76
+FD F VQ WP YC+ P F IHGLWP GK + R +
Sbjct: 7 DFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYENGK--WPQNCDRESSL 64
Query: 77 DTIGRGNLFTDMRYYWPGL---TKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVD 133
D +L + M WP L + + W +W HG+ S L YFQ + RK +
Sbjct: 65 DESEISDLISTMEKNWPSLACPSSDGVRFWSHEWLKHGTCSALGERAYFQAALDFRKKSN 124
Query: 134 LVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADAD 193
L++ L + I PR G + + ++ I + GH+ I ++ H + +V LC D
Sbjct: 125 LLENLKNAEITPR-NGEHYTLESIKKAIEEGVGHSPYIECNVDTQGNHQIYQVYLCVDKT 183
Query: 194 ARNFIDCNPEEFQQQNCGPDILF 216
A +FIDC P + CG I F
Sbjct: 184 ATDFIDC-PIFPHGRGCGSKIEF 205
>pdb|1IYB|A Chain A, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
pdb|1IYB|B Chain B, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
Length = 208
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 26/210 (12%)
Query: 22 NFDHFLLVQTWPHGYCER-----IPRNCSIRNYFVIHGLWPVTAKGK----AFLSRKRKR 72
+FD F VQ WP YC+ P+ + F IHGLWP G + +
Sbjct: 7 DFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSPYDQ 66
Query: 73 VNVSDTIGRGNLFTDMRYYWPGL---TKTDLNLWEDQWFAHGSDSPLV--PLDYFQRTIQ 127
VSD I R M+ WP L + T W +W HG+ + V YF++ +
Sbjct: 67 SQVSDLISR------MQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALD 120
Query: 128 LRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGH-LLSEV 186
L+ ++L++ L GI P G + ++ + I G+ I +C + G+ L ++
Sbjct: 121 LKNQINLLEILQGAGIHP--DGGFYSLNSIKNAIRSAIGYAPGI-ECNVDESGNSQLYQI 177
Query: 187 MLCADADARNFIDCNPEEFQQQNCGPDILF 216
+C D N I+C F + CG I F
Sbjct: 178 YICVDGSGSNLIEC--PIFPRGKCGSSIEF 205
>pdb|1DIX|A Chain A, Crystal Structure Of Rnase Le
Length = 208
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 83/210 (39%), Gaps = 19/210 (9%)
Query: 19 ARNNFDHFLLVQTWPHGYCER-----IPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRV 73
+FD F VQ WP YC+ P F IHGLWP G
Sbjct: 3 GSKDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPNNNDGT--YPSNCDPN 60
Query: 74 NVSDTIGRGNLFTDMRYYWPGL---TKTDLNLWEDQWFAHGSDSPLVPLD---YFQRTIQ 127
+ D +L + M+ WP L + + W +W HG+ + V + YF++ +
Sbjct: 61 SPYDQSQISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALD 120
Query: 128 LRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGH-LLSEV 186
L+ +DL+ L I P G ++ R I G+ I +C + G+ L +V
Sbjct: 121 LKNQIDLLSILQGADIHP--DGESYDLVNIRNAIKSAIGYTPWI-QCNVDQSGNSQLYQV 177
Query: 187 MLCADADARNFIDCNPEEFQQQNCGPDILF 216
+C D + I+C F CG I F
Sbjct: 178 YICVDGSGSSLIEC--PIFPGGKCGTSIEF 205
>pdb|3T0O|A Chain A, Crystal Structure Analysis Of Human Rnase T2
Length = 238
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 21/210 (10%)
Query: 21 NNFDHFLLVQTWPHGYCERIPRNC-SIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTI 79
+ + ++VQ WP CE+I +C +Y+ IHGLWP ++G + N+ +
Sbjct: 8 HEWKKLIMVQHWPETVCEKIQNDCRDPPDYWTIHGLWPDKSEG----CNRSWPFNLEEI- 62
Query: 80 GRGNLFTDMRYYWPGLTKTDLN---LWEDQWFAHGSDSPLVPL-----DYFQRTIQLRKL 131
+L +MR YWP + + N W+ +W HG+ + V YF R+++L +
Sbjct: 63 --KDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRE 120
Query: 132 VDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTI--LKCYSSKRGHLLSEVMLC 189
+DL L +GI P + + ++ + ++ G I L + + ++ LC
Sbjct: 121 LDLNSVLLKLGIKPSINYY--QVADFKDALARVYGVIPKIQCLPPSQDEEVQTIGQIELC 178
Query: 190 ADADARNFIDCNPEEFQQQNCGPDILFSKG 219
+ +C E +Q + ++ + G
Sbjct: 179 LTKQDQQLQNCT-EPGEQPSPKQEVWLANG 207
>pdb|1J1F|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex
With 5'-Gmp
Length = 191
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 20/202 (9%)
Query: 23 FDHFLLVQTWPHGYCE-RIPRNC--SIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTI 79
FD F VQ WP C + +C S F IHGLWP + G + + +++
Sbjct: 2 FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQS-GTSLTNCPGSPFDITKI- 59
Query: 80 GRGNLFTDMRYYWPG-LTKTDLNLWEDQWFAHG--SDSPLVPLDYFQRTIQLRKLVDLVK 136
+L + + WP L + W +W HG S+S YF+ + +R D++
Sbjct: 60 --SHLQSQLNTLWPTVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIG 117
Query: 137 ALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHL--LSEVMLCADADA 194
AL P G T + + G +K L+C + + + L EV+ C D
Sbjct: 118 ALRPHAAGP--NGRTKSRQAIK-GFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDG 174
Query: 195 RNFIDCNPEEFQQQNCGPDILF 216
IDC + CG + +F
Sbjct: 175 STLIDCT-----RDTCGANFIF 191
>pdb|1BK7|A Chain A, Ribonuclease Mc1 From The Seeds Of Bitter Gourd
pdb|1UCA|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 2'-Ump
pdb|1UCC|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 3'-Ump.
pdb|1UCD|A Chain A, Crystal Structure Of Ribonuclease Mc1 From Bitter Gourd
Seeds Complexed With 5'-Ump
Length = 190
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 20/202 (9%)
Query: 23 FDHFLLVQTWPHGYCE-RIPRNC--SIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTI 79
FD F VQ WP C + +C S F IHGLWP + G + + +++
Sbjct: 1 FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQS-GTSLTNCPGSPFDITKI- 58
Query: 80 GRGNLFTDMRYYWPG-LTKTDLNLWEDQWFAHG--SDSPLVPLDYFQRTIQLRKLVDLVK 136
+L + + WP L + W +W HG S+S YF+ + +R D++
Sbjct: 59 --SHLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIG 116
Query: 137 ALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHL--LSEVMLCADADA 194
AL P G T + + G +K L+C + + + L +V+ C D
Sbjct: 117 ALRPHAAGP--NGRTKSRQAIK-GFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDG 173
Query: 195 RNFIDCNPEEFQQQNCGPDILF 216
IDC + CG + +F
Sbjct: 174 STLIDCT-----RDTCGANFIF 190
>pdb|1J1G|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71s In Complex
With 5'-Gmp
Length = 190
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 20/201 (9%)
Query: 24 DHFLLVQTWPHGYCE-RIPRNC--SIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIG 80
D F VQ WP C + +C S F IHGLWP + G + + +++
Sbjct: 2 DSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQS-GTSLTNCPGSPFDITKI-- 58
Query: 81 RGNLFTDMRYYWPG-LTKTDLNLWEDQWFAHG--SDSPLVPLDYFQRTIQLRKLVDLVKA 137
+L + + WP L + W +W HG S+S YF+ + +R D++ A
Sbjct: 59 -SHLQSQLNTLWPSVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGA 117
Query: 138 LGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHL--LSEVMLCADADAR 195
L P G T + + G +K L+C + + + L EV+ C D
Sbjct: 118 LRPHAAGP--NGRTKSRQAIK-GFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGS 174
Query: 196 NFIDCNPEEFQQQNCGPDILF 216
IDC + CG + +F
Sbjct: 175 TLIDCT-----RDTCGANFIF 190
>pdb|1V9H|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant Y101a In Complex
With 5'-Ump
Length = 197
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 20/202 (9%)
Query: 23 FDHFLLVQTWPHGYCE-RIPRNC--SIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTI 79
FD F VQ WP C + +C S F IHGLWP + G + + +++
Sbjct: 8 FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQS-GTSLTNCPGSPFDITKI- 65
Query: 80 GRGNLFTDMRYYWPG-LTKTDLNLWEDQWFAHG--SDSPLVPLDYFQRTIQLRKLVDLVK 136
+L + + WP L + W +W HG S+S F+ + +R D++
Sbjct: 66 --SHLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAAFKLAVDMRNNYDIIG 123
Query: 137 ALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHL--LSEVMLCADADA 194
AL P G T + + G +K L+C + + + L EV+ C D
Sbjct: 124 ALRPHAAGP--NGRTKSRQAIK-GFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDG 180
Query: 195 RNFIDCNPEEFQQQNCGPDILF 216
IDC + CG + +F
Sbjct: 181 STLIDCT-----RDTCGANFIF 197
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase
Length = 247
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 20/117 (17%)
Query: 50 FVIHGLWPVTAKG--KAFLSRKRKRVNVSDTI---GRGNLFTDMRYYWPGL--TKTDLNL 102
+ IHGLWP G + + R+ N++ + R L + M+ YWP D +
Sbjct: 48 WTIHGLWPDNCDGTYQEYCDESREYSNITSILEAQNRTELLSYMKEYWPDYEGADEDESF 107
Query: 103 WEDQWFAHGS----DSPLVPLDY---------FQRTIQLRKLVDLVKALGDVGIVPR 146
WE +W HG+ P DY FQ+ + L K +D AL D GI P
Sbjct: 108 WEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGITPS 164
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases
As Antitumorigenic Agents
Length = 237
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 20/117 (17%)
Query: 50 FVIHGLWPVTAKG--KAFLSRKRKRVNVSDTI---GRGNLFTDMRYYWPGL--TKTDLNL 102
+ IHGLWP G + + R+ N++ + R L + M+ YWP D +
Sbjct: 48 WTIHGLWPDNCDGTYQEYCDESREYSNITSILEAQNRTELLSYMKEYWPDYEGADEDESF 107
Query: 103 WEDQWFAHGS----DSPLVPLDY---------FQRTIQLRKLVDLVKALGDVGIVPR 146
WE +W HG+ P DY FQ+ + L K +D AL D GI P
Sbjct: 108 WEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGITPS 164
>pdb|1UCG|A Chain A, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
pdb|1UCG|B Chain B, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
Length = 190
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 20/201 (9%)
Query: 24 DHFLLVQTWPHGYCE-RIPRNC--SIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIG 80
D F VQ WP C + +C S F IHGLWP + G + + +++
Sbjct: 2 DSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQS-GTSLTNCPGSPFDITKI-- 58
Query: 81 RGNLFTDMRYYWPG-LTKTDLNLWEDQWFAHG--SDSPLVPLDYFQRTIQLRKLVDLVKA 137
+L + + WP L + W +W HG S+S YF+ + +R D++ A
Sbjct: 59 -SHLQSQLNTLWPTVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGA 117
Query: 138 LGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHL--LSEVMLCADADAR 195
L P G T + + G +K L+C + + + L +V+ C D
Sbjct: 118 LRPHAAGP--NGRTKSRQAIK-GFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGS 174
Query: 196 NFIDCNPEEFQQQNCGPDILF 216
IDC + CG + +F
Sbjct: 175 TLIDCT-----RDTCGANFIF 190
>pdb|1IOO|A Chain A, Crystal Structure Of Nicotiana Alata Gemetophytic
Self-incompatibility Associated Sf11-rnase
pdb|1IOO|B Chain B, Crystal Structure Of Nicotiana Alata Gemetophytic
Self-incompatibility Associated Sf11-rnase
Length = 196
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 27/193 (13%)
Query: 22 NFDHFLLVQTWPHGYC-----ERIPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVS 76
+F++ LV TWP +C ERI N F IHGLWP K + + +
Sbjct: 1 DFEYLQLVLTWPASFCYANHCERI-----APNNFTIHGLWPDNVKTRLHNCKPKPTY--- 52
Query: 77 DTIGRGNLFTDMRYYWPGLT------KTDLNLWEDQWFAHGS--DSPLVPLDYFQRTIQL 128
+ G + D+ +W L +T+ W+ Q+ HGS YF ++L
Sbjct: 53 -SYFTGKMLNDLDKHWMQLKFEQDYGRTEQPSWKYQYIKHGSCCQKRYNQNTYFGLALRL 111
Query: 129 RKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGH-LLSEVM 187
+ DL++ L I+P G ++ I K N +KC +G L E+
Sbjct: 112 KDKFDLLRTLQTHRIIP---GSSYTFQDIFDAI-KTVSQENPDIKCAEVTKGTPELYEIG 167
Query: 188 LCADADARNFIDC 200
+C +A + C
Sbjct: 168 ICFTPNADSMFRC 180
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus
Niveus At 2.0 A Resolution
Length = 222
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 48 NYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIGR------GNLFTDMRYYWPGLTKTDLN 101
N F +HGLWP G S S +I +L+ M YWP +
Sbjct: 41 NAFTLHGLWPDKCSGAYAPSGGCDSNRASSSIASVIKSKDSSLYNSMLTYWPSNQGNNNV 100
Query: 102 LWEDQWFAHGS-DSPLVP------------LDYFQRTIQLRKLVDLVKALGDVGIVPRYK 148
W +W HG+ S P +DYFQ+ + LR ++ KA GI P
Sbjct: 101 FWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITP--- 157
Query: 149 GFTHHKSTYRQGIMKITG 166
G T+ + + I G
Sbjct: 158 GGTYTATEMQSAIESYFG 175
>pdb|1IQQ|A Chain A, Crystal Structure Of Japanese Pear S3-Rnase
Length = 200
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 79/200 (39%), Gaps = 30/200 (15%)
Query: 23 FDHFLLVQTWPHGYCERIPRNCS--IRNYFVIHGLWPVTAKG----KAFLSRKRKRVNVS 76
+D+F Q + C C F +HGLWP G K + RKR +
Sbjct: 1 YDYFQFTQQYQLAVCNSNRTLCKDPPDKLFTVHGLWPSNMVGPDPSKCPIKNIRKREKL- 59
Query: 77 DTIGRGNLFTDMRYYWPGL---TKTDLNLWEDQWFAHGS-DSPLVPLD--YFQRTIQL-- 128
L + WP + TK +L W+ +W HGS P + + YF+ I++
Sbjct: 60 -------LEHQLEIIWPNVFDRTKNNL-FWDKEWMKHGSCGYPTIDNENHYFETVIKMYI 111
Query: 129 RKLVDLVKALGDVGIVP--RYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEV 186
K ++ + L I P + + ++ R G K +++ L E+
Sbjct: 112 SKKQNVSRILSKAKIEPDGKKRALLDIENAIRNGADNKKPKLKCQKKGTTTE----LVEI 167
Query: 187 MLCADADARNFIDCNPEEFQ 206
LC+D +FIDC P F+
Sbjct: 168 TLCSDKSGEHFIDC-PHPFE 186
>pdb|1SGL|A Chain A, The Three-Dimensional Structure And X-Ray Sequence Reveal
That Trichomaglin Is A Novel S-Like Ribonuclease
Length = 209
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 22/142 (15%)
Query: 22 NFDHFLLVQTWPHGYCER----IPRNCSIR----NYFVIHGLWPVTAKGKAFLSRKRKRV 73
FD+F+L W C P N + F IHGL P + G+
Sbjct: 4 EFDYFILALQWAGTSCRSGGACCPYNGCCKADSPTQFTIHGLRPEYSGGERPSCCTGGSF 63
Query: 74 NVSDTIGRGNLFTDMRYYWP----GLTKTDLN----LWEDQWFAHGS-DSPLV--PLDYF 122
+ + + F + YWP L ++ N LW Q+ HG+ SP++ +YF
Sbjct: 64 DPDEIM---PFFGKLVEYWPTYRCALEQSCNNRKEILWGQQYEKHGTCASPVIKGEWNYF 120
Query: 123 QRTIQLRKLVDLVKALGDVGIV 144
++T++L ++ KAL D GIV
Sbjct: 121 KKTLKLFMKYNVDKALEDAGIV 142
>pdb|1JY5|A Chain A, Rnase-Related Protein From Calystegia Sepium
pdb|1JY5|B Chain B, Rnase-Related Protein From Calystegia Sepium
Length = 212
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 36/193 (18%)
Query: 22 NFDHFLLVQTWPHGYCERIPRNC--------SIRNYFVIHGLWPVTAKGKAFLSRKRKRV 73
FD+F L TW C + +C + F I GLWP G + +
Sbjct: 4 EFDYFTLALTWSGTECLSVKDSCPTNACSRSEVETGFTIKGLWPDYDDGTWPSCCEGAKY 63
Query: 74 NVSDTIGRGNLFTDMRYYWPGLT--------KTDLNLWEDQWFAHGS-DSPLV--PLDYF 122
+ ++ N D+ YWP + D + +W HG+ SP++ +YF
Sbjct: 64 DQNEISILSN---DLSKYWPSYSCPSSSACGSFDASDLAYEWAKHGTCSSPVLGNQYEYF 120
Query: 123 QRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYR-QGIMKITGHN---NTILKCYSSK 178
T+ L ++ + L + G +P + + Y+ +GIM ++KC
Sbjct: 121 STTLMLYFKYNISEILSESGYLPS------NTAEYKVEGIMSAIQSALRVTPVVKC---- 170
Query: 179 RGHLLSEVMLCAD 191
+ + +V +C D
Sbjct: 171 KSDAVEQVQICFD 183
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 33.9 bits (76), Expect = 0.074, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 118 PLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNN 169
PL Y++R + LR+ +D+ + + + + P+ G HH +Y+QG K+ N+
Sbjct: 146 PLPYYRRPVLLREYLDIDQMIFNREL-PQAAGVLHHCCSYKQGGQKLLTMNS 196
>pdb|2PQY|A Chain A, E. Coli Rnase 1 (in Vitro Refolded With Dsba Only)
pdb|2PQX|A Chain A, E. Coli Rnase 1 (In Vivo Folded)
pdb|2EA1|A Chain A, Crystal Structure Of Ribonuclease I From Escherichia
Coli Complexed With
Guanylyl-2(Prime),5(Prime)-Guanosine
pdb|2Z70|A Chain A, E.Coli Rnase 1 In Complex With D(Cgcgatcgcg)
Length = 245
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 22 NFDHFLLVQTWPHGYCE------RIPRN-CSIR-------NYFVIHGLWPVTAKGKA 64
+FD ++L +W G+C+ R R+ C ++ ++ +HGLWP K A
Sbjct: 10 DFDRYVLALSWQTGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVA 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,754,103
Number of Sequences: 62578
Number of extensions: 267127
Number of successful extensions: 678
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 18
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)