Query 044555
Match_columns 222
No_of_seqs 108 out of 1239
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:25:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01061 RNase_T2_euk Ribonucle 100.0 1.6E-53 3.6E-58 353.8 19.2 185 23-216 1-195 (195)
2 cd00374 RNase_T2 Ribonuclease 100.0 3.8E-52 8.3E-57 344.7 18.6 186 23-216 1-195 (195)
3 PF00445 Ribonuclease_T2: Ribo 100.0 1.8E-52 3.8E-57 345.8 14.1 175 23-202 1-189 (189)
4 KOG1642 Ribonuclease, T2 famil 100.0 4.8E-51 1E-55 342.0 16.9 193 19-220 28-241 (263)
5 cd01062 RNase_T2_prok Ribonucl 100.0 1.5E-46 3.3E-51 309.4 14.3 165 23-212 1-179 (184)
6 PRK10095 ribonuclease I; Provi 100.0 3.5E-41 7.7E-46 290.4 16.5 188 19-219 30-266 (268)
7 COG3719 Rna Ribonuclease I [Tr 100.0 6.3E-39 1.4E-43 268.4 12.9 175 21-218 50-247 (249)
8 PF10731 Anophelin: Thrombin i 63.9 7.6 0.00016 26.1 2.5 17 1-17 1-17 (65)
9 PF08255 Leader_Trp: Trp-opero 63.3 4.8 0.00011 19.1 1.1 9 49-57 4-12 (14)
10 cd03171 SORL_Dfx_classI Supero 51.0 5.6 0.00012 28.2 0.2 9 48-56 69-77 (78)
11 cd00524 SORL Superoxide reduct 50.9 5.7 0.00012 28.3 0.3 8 49-56 78-85 (86)
12 TIGR00332 neela_ferrous desulf 45.5 7.3 0.00016 29.2 0.1 11 48-58 90-100 (107)
13 cd03172 SORL_classII Superoxid 45.4 7.5 0.00016 28.9 0.2 10 49-58 93-102 (104)
14 PF00446 GnRH: Gonadotropin-re 42.4 8.1 0.00018 16.7 -0.0 7 102-108 2-8 (10)
15 PF08368 FAST_2: FAST kinase-l 40.3 92 0.002 22.3 5.3 42 153-195 49-90 (93)
16 PF01880 Desulfoferrodox: Desu 38.2 7.3 0.00016 28.6 -0.9 8 51-58 88-95 (96)
17 PF09680 Tiny_TM_bacill: Prote 37.5 28 0.00061 19.0 1.6 13 5-17 6-18 (24)
18 PF05399 EVI2A: Ectropic viral 36.9 24 0.00052 29.8 1.9 49 1-60 128-189 (227)
19 TIGR00320 dfx_rbo desulfoferro 36.6 12 0.00027 28.8 0.2 11 48-58 114-124 (125)
20 COG2033 Desulfoferrodoxin [Ene 36.1 15 0.00032 28.3 0.5 11 48-58 111-121 (126)
21 cd07885 RHD-n_RelA N-terminal 35.7 15 0.00033 29.9 0.5 70 102-193 72-146 (169)
22 PF08766 DEK_C: DEK C terminal 34.8 52 0.0011 21.1 2.9 29 134-168 9-37 (54)
23 PRK14746 RepA leader peptide T 30.8 60 0.0013 17.8 2.2 24 1-24 1-24 (26)
24 TIGR03595 Obg_CgtA_exten Obg f 30.6 63 0.0014 22.1 2.9 26 118-147 32-57 (69)
25 cd07886 RHD-n_RelB N-terminal 29.9 43 0.00094 27.3 2.3 72 102-194 74-150 (172)
26 PF09269 DUF1967: Domain of un 29.4 68 0.0015 21.9 2.9 27 117-147 31-57 (69)
27 cd07884 RHD-n_Relish N-termina 28.5 34 0.00073 27.6 1.4 36 138-194 100-136 (159)
28 PF01328 Peroxidase_2: Peroxid 26.5 70 0.0015 28.7 3.2 37 131-168 49-85 (317)
29 PF10281 Ish1: Putative stress 26.1 1.1E+02 0.0025 18.0 3.2 29 133-163 8-36 (38)
30 TIGR01732 tiny_TM_bacill conse 26.1 60 0.0013 18.1 1.7 13 5-17 8-20 (26)
31 PRK14745 RepA leader peptide T 25.2 1.1E+02 0.0024 16.8 2.6 24 1-24 1-25 (26)
32 PRK13683 hypothetical protein; 22.9 1.2E+02 0.0025 22.0 3.2 39 154-194 29-73 (87)
33 PRK14758 hypothetical protein; 22.2 1E+02 0.0022 17.2 2.1 17 1-17 1-17 (27)
34 TIGR03853 matur_matur probable 21.1 1.4E+02 0.003 21.1 3.2 47 149-199 16-62 (77)
35 PF10678 DUF2492: Protein of u 20.0 1.5E+02 0.0033 21.0 3.2 28 149-177 18-45 (78)
No 1
>cd01061 RNase_T2_euk Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members.
Probab=100.00 E-value=1.6e-53 Score=353.84 Aligned_cols=185 Identities=33% Similarity=0.659 Sum_probs=157.8
Q ss_pred cceEEEEEEcccccccccCCCCCCC--CceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHhccCCCCccC
Q 044555 23 FDHFLLVQTWPHGYCERIPRNCSIR--NYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTKT 98 (222)
Q Consensus 23 fd~~~l~~~W~p~~C~~~~~~C~~~--~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~~~Wp~~~~~ 98 (222)
||||+||++|||+||+..+..|..+ .+||||||||++. ++|++|+... -++....+++..+|+.+||++...
T Consensus 1 ~d~~~l~~~Wpps~C~~~~~~c~~~~~~~ftiHGLWP~~~~g~~p~~C~~~~----~~~~~~~~~l~~~L~~~Wp~l~~~ 76 (195)
T cd01061 1 FDYLQLVLQWPDTYCSTGPCCCRPPPPDSFTIHGLWPDNCSGTYPQFCDSSS----NFDSILISDLLNELNKYWPDLTGP 76 (195)
T ss_pred CCeEEEEEECCCCcccCCCCcCCCCCcccCEEeccCCCCCCCCCCCCCCCcc----cCCcccchhhhHHHhccCCCCcCC
Confidence 7999999999999996544566443 9999999999987 4689998631 111222368899999999999876
Q ss_pred --CcchhhhhcceeeecCC---CChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHhCCcceEEE
Q 044555 99 --DLNLWEDQWFAHGSDSP---LVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILK 173 (222)
Q Consensus 99 --~~~fw~hEW~KHGtC~~---~~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~~~~l~ 173 (222)
+..||+|||.|||||++ .++.+||++|++|++++|+..+|+++||+|+ .+. |++++|++||++++|.. |.|+
T Consensus 77 ~~~~~fw~hEW~KHGTC~~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~~I~P~-~~~-~~~~~i~~ai~~~~g~~-~~l~ 153 (195)
T cd01061 77 KNNQSFWEHEWNKHGTCSSTLLYNQYDYFDTALKLKDKLDLLKILAKAGIVPS-TQT-YTLSDIQNAIKAATGVT-PVIK 153 (195)
T ss_pred CCcchHHHHHHhhCcEeCCCcccCHHHHHHHHHHHHHHCCHHHHHHHCCcCCC-CcE-EcHHHHHHHHHHHHCCC-cEEE
Confidence 67799999999999999 8999999999999999999999999999997 477 99999999999999999 9999
Q ss_pred eeeCCCCCeEEEEEEEEecCCCceecCCCCCcCCCCCC-CCeEe
Q 044555 174 CYSSKRGHLLSEVMLCADADARNFIDCNPEEFQQQNCG-PDILF 216 (222)
Q Consensus 174 C~~~~~~~~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C~-~~i~~ 216 (222)
|.+++++++|.||+||||+++..+++||... ..+|| ++|+|
T Consensus 154 C~~~~~~~~L~Ev~iC~~k~~~~~~~C~~~~--~~~C~~~~i~f 195 (195)
T cd01061 154 CSKDPGKGELNEIWICFDKKGGEFIDCPRPP--KSTCPDDGIKF 195 (195)
T ss_pred eCcCCCCcEEEEEEEEEECCCCeEeeCCCCC--CCCCCCCceEC
Confidence 9876544599999999999954599999864 34799 77775
No 2
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen.
Probab=100.00 E-value=3.8e-52 Score=344.69 Aligned_cols=186 Identities=32% Similarity=0.627 Sum_probs=156.3
Q ss_pred cceEEEEEEcccccccccCCCCCC--C-CceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHhccCCCCcc
Q 044555 23 FDHFLLVQTWPHGYCERIPRNCSI--R-NYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTK 97 (222)
Q Consensus 23 fd~~~l~~~W~p~~C~~~~~~C~~--~-~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~~~Wp~~~~ 97 (222)
||||+||++|||+||+.....|.. + .+||||||||++. ++|++|+..+.. +.....+|.++|.++||++..
T Consensus 1 ~d~~~l~l~W~p~~C~~~~~~~~~~~~~~~ftiHGLWP~~~~g~~p~~C~~~~~~----~~~~~~~l~~~l~~~w~~~~~ 76 (195)
T cd00374 1 FDYYVLVLQWPPTFCATGPCKCCGTPPPDSFTIHGLWPDNCDGTYPQFCDSSSFF----DKSKDSDLLDELNKYWPDLMP 76 (195)
T ss_pred CCeEEEEEeCcCCcccCCCCCCCCCCchHHeeEccccCCCCCCCCCCCCCCCccc----cccccHHHHHHHHhhCcccCC
Confidence 799999999999999433333322 2 9999999999987 368999876321 112236789999999999997
Q ss_pred C-CcchhhhhcceeeecCC--CChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHhCCcceEEEe
Q 044555 98 T-DLNLWEDQWFAHGSDSP--LVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKC 174 (222)
Q Consensus 98 ~-~~~fw~hEW~KHGtC~~--~~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~~~~l~C 174 (222)
+ +..||+|||.|||||++ .++.+||++|++|++++|++++|+.+||+|+..+. |++++|++||++++|+. |.|+|
T Consensus 77 ~~~~~fw~hEW~KHGTC~~~~~~~~~YF~~a~~l~~~~ni~~~L~~~~i~p~~~~~-~~~~~i~~ai~~~~g~~-~~l~C 154 (195)
T cd00374 77 GKDSSFWKHEWNKHGTCSGTLLDQDDYFRTALKLLDKLDLLSILAKAGIKPSDGST-YTLAFIQNAIKAATGAT-PSLKC 154 (195)
T ss_pred CCCchHHHHHHhcCceecCCcCCHHHHHHHHHHHHHhCCHHHHHHHCCCcCCCCce-ecHHHHHHHHHHHHCCC-cEEEe
Confidence 7 66799999999999999 99999999999999999999999999999974367 99999999999999999 99999
Q ss_pred eeCCCCCeEEEEEEEEecCCCceecCCCCCcCCCCCC-CCeEe
Q 044555 175 YSSKRGHLLSEVMLCADADARNFIDCNPEEFQQQNCG-PDILF 216 (222)
Q Consensus 175 ~~~~~~~~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C~-~~i~~ 216 (222)
.+++++++|.||+||+++++.++++||... .++|| ++|+|
T Consensus 155 ~~~~~~~~L~Ev~iC~~~~~~~~~~C~~~~--~~~C~~~~i~~ 195 (195)
T cd00374 155 TKDPGKGLLTEIWICFDKDALKFIDCPTPG--KSTCPADGIKF 195 (195)
T ss_pred ccCCCCcEEEEEEEEEECCCCeEEeCCCCC--CCCCCCCcEEC
Confidence 876544499999999999954599999853 34799 77765
No 3
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3.1.27.1 from EC). Two histidines residues have been shown [, ] to be involved in the catalytic mechanism of RNase T2 and Rh. These residues and the region around them are highly conserved in a number of other RNAses that have been found to be evolutionary related to these fungal enzymes.; GO: 0003723 RNA binding, 0033897 ribonuclease T2 activity; PDB: 1IOO_A 3D3Z_A 1UCG_B 1UCC_A 1J1F_A 1V9H_A 1UCD_A 1J1G_A 1UCA_A 1BK7_A ....
Probab=100.00 E-value=1.8e-52 Score=345.77 Aligned_cols=175 Identities=30% Similarity=0.622 Sum_probs=147.0
Q ss_pred cceEEEEEEcccccccccCCCCCCC--CceEEeeeeecCC--C-CCCCCCcccc-c-ccccccccCCCchHHHhccCCCC
Q 044555 23 FDHFLLVQTWPHGYCERIPRNCSIR--NYFVIHGLWPVTA--K-GKAFLSRKRK-R-VNVSDTIGRGNLFTDMRYYWPGL 95 (222)
Q Consensus 23 fd~~~l~~~W~p~~C~~~~~~C~~~--~~ftIHGLWP~~~--~-~~~~c~~~~~-~-~~~~~~~~~~~l~~~L~~~Wp~~ 95 (222)
||||+||++|||+||+....+|..+ ++||||||||++. + +|++|...+. . .++ ..++++..+|++|||++
T Consensus 1 fD~~~l~~~W~p~~C~~~~~~C~~~~~~~ftIHGLWP~~~~~~~~p~~C~~~~~~~~~~~---~~~~~~~~~L~~~Wp~~ 77 (189)
T PF00445_consen 1 FDYYVLALQWPPSFCSTNSPQCKPPPPNNFTIHGLWPSNCDGGTYPQNCNSSPNFDNSNL---SNPPELKSELDKYWPDL 77 (189)
T ss_dssp -SEEEEEEEEHHHHTSSSSSCHSSSSTSSEEEEEEEEETTTSSSCCCSSSTTTTTSGGGG---GH-HGGHHHHHHHSTBS
T ss_pred CeEEEEEEEeCchhcCCCCCcCCCCCCcceEEecccCCCCCCCCCcceecCccccccccc---hhhhHHhhhhhhhhhhh
Confidence 8999999999999995345678653 9999999999965 3 7899977632 1 112 00248999999999999
Q ss_pred ccCC-cchhhhhcceeeecCCCC---hHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHh-CCcce
Q 044555 96 TKTD-LNLWEDQWFAHGSDSPLV---PLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKIT-GHNNT 170 (222)
Q Consensus 96 ~~~~-~~fw~hEW~KHGtC~~~~---~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~-g~~~~ 170 (222)
..++ ..||+|||.|||||++.+ +.+||++|++|++++|+.++|+++||+|+..+. |++++|++||++++ |.. |
T Consensus 78 ~~~~~~~fw~hEW~KHGtC~~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~gI~p~~~~~-~~~~~i~~al~~~~~~~~-~ 155 (189)
T PF00445_consen 78 KNSNSESFWKHEWEKHGTCSGMDFIDQYDYFSTALKLYKKLNLPKILANAGIVPSNGKT-YSLSDIRDALKQAFNGVR-P 155 (189)
T ss_dssp SSSHHHHHHHHHHHHTGGGGTTTSSSHHHHHHHHHHHHHHCHHHHHHHHTTHCSCSSEE-EEHHHHHHHHHHHHTSSG-E
T ss_pred ccchhhhhHHhcceeeeEEcCCchhhHHHHHHHHHHHHHhccchHHHhhcccCCCcccc-ccHHHHHHHHHHHcCCCc-e
Confidence 9876 489999999999999987 999999999999999999999999999986456 99999999999999 888 9
Q ss_pred EEEeeeC-CCCC-eEEEEEEEEecCCCceecCCC
Q 044555 171 ILKCYSS-KRGH-LLSEVMLCADADARNFIDCNP 202 (222)
Q Consensus 171 ~l~C~~~-~~~~-~L~EI~iC~~~~~~~~i~Cp~ 202 (222)
.|+|.++ .++. +|.||++||++++..+||||.
T Consensus 156 ~l~C~~~~~~~~~~L~ei~iC~~~~~~~~idCp~ 189 (189)
T PF00445_consen 156 QLRCSRNQVNGEQYLTEIRICFDKDLFQFIDCPC 189 (189)
T ss_dssp EEEEECTETTSEEEEEEEEEEEETTSSSEE--S-
T ss_pred EEEEecCCCCCcEEEEEEEEEEeCCCCeEeCCcC
Confidence 9999986 4444 999999999999966999984
No 4
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=100.00 E-value=4.8e-51 Score=341.95 Aligned_cols=193 Identities=27% Similarity=0.547 Sum_probs=161.0
Q ss_pred CCCCcceEEEEEEcccccccccCCCCCC-C----CceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHhcc
Q 044555 19 ARNNFDHFLLVQTWPHGYCERIPRNCSI-R----NYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMRYY 91 (222)
Q Consensus 19 ~~~~fd~~~l~~~W~p~~C~~~~~~C~~-~----~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~~~ 91 (222)
...+||+|.|+|+||.++| ...++|+. + ..||||||||++. ++|+||+++.. .+...-.+|.++|+++
T Consensus 28 ~~~~fd~f~fvqqWP~~~C-d~~~~~C~~~~G~~a~ftIHGLWP~~~~G~~P~~Cn~s~~----Fd~~~isdl~~~L~~~ 102 (263)
T KOG1642|consen 28 SEEDFDFFYFVQQWPGAYC-DSQRTCCYPPSGKPADFTIHGLWPDYNHGSWPQNCNRSSQ----FDDSKISDLEDSLEKE 102 (263)
T ss_pred ccCCCCEEEEEEecCCccc-cCCccccCCCCCCccceEEeeeccCCCCCCCcccCCCccc----CChHHccchhhhHHhh
Confidence 3489999999999999999 55555555 3 5999999999987 68999998732 1112228999999999
Q ss_pred CCCCccCC-----cchhhhhcceeeecCC--C---ChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHH
Q 044555 92 WPGLTKTD-----LNLWEDQWFAHGSDSP--L---VPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGI 161 (222)
Q Consensus 92 Wp~~~~~~-----~~fw~hEW~KHGtC~~--~---~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai 161 (222)
||+++.++ +.||+|||+|||||+. + +|.+||.++++|++++|+..+|.++||.|++ +. |++++|++||
T Consensus 103 Wp~L~~~s~n~g~~~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~-~~-y~l~~I~nAi 180 (263)
T KOG1642|consen 103 WPDLYCPSPNGGHESFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDD-NF-YSLADIKNAI 180 (263)
T ss_pred ccccccCCCCCccchhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCC-Cc-eeHHHHHHHH
Confidence 99999654 4699999999999999 4 9999999999999999999999999999976 77 9999999999
Q ss_pred HHHhCCcceEEEeeeCCCCC--eEEEEEEEEecCCC--ceecCCCCCcCCCCCCCCeEecCCC
Q 044555 162 MKITGHNNTILKCYSSKRGH--LLSEVMLCADADAR--NFIDCNPEEFQQQNCGPDILFSKGK 220 (222)
Q Consensus 162 ~~~~g~~~~~l~C~~~~~~~--~L~EI~iC~~~~~~--~~i~Cp~~~~~~~~C~~~i~~p~~~ 220 (222)
++++|.. |.+.|.++.+++ +|.||++|+.|+.. ..+.||... ....|+..+.+|.|.
T Consensus 181 ~~~~G~~-p~I~C~rd~~~nv~~l~qI~lCl~kd~~~~d~~~~~~~~-P~g~~~~~~~~ps~~ 241 (263)
T KOG1642|consen 181 KEAIGKT-PGIECLRDSKHNVSQLGQIRLCLLKDFSPRDCIECPTEF-PRGSCPTFIQFPSFG 241 (263)
T ss_pred HHHhCCC-CceEeccCcccCceEeeeEEEEeecCcccccccCCCCcc-cCCcccccccCCCCC
Confidence 9999999 999999887665 99999999987775 234445322 233599999999875
No 5
>cd01062 RNase_T2_prok Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the prokaryotic RNase T2 family members.
Probab=100.00 E-value=1.5e-46 Score=309.44 Aligned_cols=165 Identities=25% Similarity=0.481 Sum_probs=136.5
Q ss_pred cceEEEEEEcccccccccCC---C---CCC--CCceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHhccC
Q 044555 23 FDHFLLVQTWPHGYCERIPR---N---CSI--RNYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYW 92 (222)
Q Consensus 23 fd~~~l~~~W~p~~C~~~~~---~---C~~--~~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~~~W 92 (222)
||||+||++|||+||. ..+ . |.. +.+||||||||++. ++|++|+..+ ..++ +.++.++|..+|
T Consensus 1 fd~~~lal~Wpps~C~-~~~~~~~~~~~~~~~~~~ftiHGLWP~~~~~~~p~~C~~~~-~~~~-----~~~~~~~l~~~~ 73 (184)
T cd01062 1 FDYYVLALSWQPGFCA-TQGDRPECATCGTLDAYGFTLHGLWPQKPKGGWPEYCGVTS-EPPL-----SEETRSRLLDVM 73 (184)
T ss_pred CceEEEEEeeCHHHhc-cCCcCCccccCCCCCCCceEEecCCCCCCCCCCcCcCcCCc-CCCC-----CHHHHHHHHhhC
Confidence 8999999999999994 432 2 233 28999999999986 3589998652 1112 256788899999
Q ss_pred CCCccCCcchhhhhcceeeecCCCChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHhCCcce--
Q 044555 93 PGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNT-- 170 (222)
Q Consensus 93 p~~~~~~~~fw~hEW~KHGtC~~~~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~~~-- 170 (222)
|+ ..||+|||+|||||++.++.+||++|++|++++|+.++|+..++ + .. |+.++|++||++++|+. +
T Consensus 74 p~-----~~~w~hEW~KHGtC~~~~~~~YF~~a~~l~~~~~~~~~l~~~~~-~---~~-~~~~~i~~a~~~~~~~~-~~~ 142 (184)
T cd01062 74 PA-----SGLIRHEWRKHGTCSGLDPDAYFAKARNLREALKIPPELRLLAG-N---IG-VTASEIRQAFIKANPGL-PPD 142 (184)
T ss_pred Cc-----hhHhHHHHhcCCcCCCCCHHHHHHHHHHHHHHcCcchhhhhccc-c---CC-cCHHHHHHHHHHHCCCC-CCc
Confidence 93 46999999999999999999999999999999999999988664 3 23 89999999999999876 4
Q ss_pred --EEEeeeCCCCCeEEEEEEEEecCCCceecCCCCCcCCCCCCC
Q 044555 171 --ILKCYSSKRGHLLSEVMLCADADARNFIDCNPEEFQQQNCGP 212 (222)
Q Consensus 171 --~l~C~~~~~~~~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C~~ 212 (222)
.|+|.+ ++|+||+||||++++ +++||... .++|++
T Consensus 143 ~~~~~C~~----~~L~Ei~iC~~~~~~-~~~C~~~~--~~~C~~ 179 (184)
T cd01062 143 AVSVSCQG----GLLTEVRICLDKDLK-FAACPTAD--RDNCPA 179 (184)
T ss_pred eEEEEECC----CeEEEEEEEeCcccC-cccCCccc--cCCCCC
Confidence 999965 399999999999986 99999854 346994
No 6
>PRK10095 ribonuclease I; Provisional
Probab=100.00 E-value=3.5e-41 Score=290.45 Aligned_cols=188 Identities=21% Similarity=0.417 Sum_probs=138.0
Q ss_pred CCCCcceEEEEEEccccccccc-------CCCCCC-------CCceEEeeeeecCC-----------CC-CCCCCcc--c
Q 044555 19 ARNNFDHFLLVQTWPHGYCERI-------PRNCSI-------RNYFVIHGLWPVTA-----------KG-KAFLSRK--R 70 (222)
Q Consensus 19 ~~~~fd~~~l~~~W~p~~C~~~-------~~~C~~-------~~~ftIHGLWP~~~-----------~~-~~~c~~~--~ 70 (222)
++|+||||+||++|+|+||+.. +++|.. ...||||||||++. ++ +.+|... |
T Consensus 30 ~~g~fd~YvLALSWqP~fC~~~~~~~~~~~~eC~~~~~~~~~~~~f~LHGLWP~~~~~~~~~g~~~~~~~~~~C~~~~~p 109 (268)
T PRK10095 30 QYGDFDRYVLALSWQTGFCQSQHDRNRNEPDECRLQKETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPIP 109 (268)
T ss_pred cCCCcceEEEEEeeCHHHHhhhccccCCCchhhhccccCCCCCCceEEecCCCCCcccccccCccccccccccccccCCC
Confidence 5789999999999999999532 247861 27799999999872 11 1124321 0
Q ss_pred --------ccccccccccCCCchHHHhccCCCCccCCcchhhhhcceeeecCCCChHHHHHHHHHHHHhcCHHH---HHh
Q 044555 71 --------KRVNVSDTIGRGNLFTDMRYYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVK---ALG 139 (222)
Q Consensus 71 --------~~~~~~~~~~~~~l~~~L~~~Wp~~~~~~~~fw~hEW~KHGtC~~~~~~~YF~~al~l~~~~n~~~---~L~ 139 (222)
...+........++...|..+||+....+ .||+|||.|||||+++++.+||+++++|++++|++. +|.
T Consensus 110 ~~p~~~~~~~C~~~~~~l~~~~~~~l~~~mP~~~~~s-~l~~heW~KHGtC~~~~~~~YF~~al~L~~kvn~s~~~~~L~ 188 (268)
T PRK10095 110 NLPEARASRKCSAPETGLSLETAAKLSEVMPGAGGRS-CLERYEYAKHGACFGFDPDAYFGTMVRLNQEIKESEAGKFLA 188 (268)
T ss_pred ccccccccccccCCCCCCCHHHHHHHHHhCCCCCccc-hhHHHHHHhCCeecCCCHHHHHHHHHHHHHHhchhhhhhhhh
Confidence 00000001123566788999999986443 599999999999999999999999999999999644 565
Q ss_pred hCCCCCCCCCccccHHHHHHHHHHHhCCc---ceEEEeeeCCCCCeEEEEEEEEecC-------CCceecCCCCCcCCCC
Q 044555 140 DVGIVPRYKGFTHHKSTYRQGIMKITGHN---NTILKCYSSKRGHLLSEVMLCADAD-------ARNFIDCNPEEFQQQN 209 (222)
Q Consensus 140 ~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~---~~~l~C~~~~~~~~L~EI~iC~~~~-------~~~~i~Cp~~~~~~~~ 209 (222)
++ .| ++ |+.++|++||++++|.. .|.|+|.++. .+|.||+||++++ ...++.|+. ..+
T Consensus 189 ~~----~G-k~-~s~~~I~~Ai~~a~G~~~~~~~~L~C~~~~--~~L~EV~ICl~~~~~~~~l~~~~~~~~~~----~~~ 256 (268)
T PRK10095 189 DN----YG-KT-VSRRDFDAAFAKSWGKENVKAVKLTCQGNP--AYLTEIQISLKADAINAPLSANSFLPQPH----PGN 256 (268)
T ss_pred cC----CC-cE-EcHHHHHHHHHHHhCCCCCCcceEEeCCCC--cEEEEEEEEcccccccCCchhhhccCCCC----CCC
Confidence 53 25 67 99999999999999854 2699997532 3899999999988 212466664 237
Q ss_pred CCCCeEecCC
Q 044555 210 CGPDILFSKG 219 (222)
Q Consensus 210 C~~~i~~p~~ 219 (222)
|+..|++++.
T Consensus 257 C~~~~~i~~~ 266 (268)
T PRK10095 257 CGKQFVIDKA 266 (268)
T ss_pred CCCCeeeCCC
Confidence 9999888764
No 7
>COG3719 Rna Ribonuclease I [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-39 Score=268.40 Aligned_cols=175 Identities=23% Similarity=0.417 Sum_probs=140.3
Q ss_pred CC-cceEEEEEEcccccccccC-C-----CCCC--CCceEEeeeeecCC-C-----CCCCCCcccccccccccccCCCch
Q 044555 21 NN-FDHFLLVQTWPHGYCERIP-R-----NCSI--RNYFVIHGLWPVTA-K-----GKAFLSRKRKRVNVSDTIGRGNLF 85 (222)
Q Consensus 21 ~~-fd~~~l~~~W~p~~C~~~~-~-----~C~~--~~~ftIHGLWP~~~-~-----~~~~c~~~~~~~~~~~~~~~~~l~ 85 (222)
|+ ||+|||+++|+|+||+... + +|.. ..+||+|||||++. + +|.||... ...++ .+.+.
T Consensus 50 g~g~d~YVLALSWsP~fC~sq~~~~e~~~Qc~~~~~~gftVHGLWPqn~~~~~~~~~pr~cr~~-~~~~l-----P~v~~ 123 (249)
T COG3719 50 GDGFDFYVLALSWSPGFCESQHDPDECRLQCETNRAFGFTVHGLWPQNENGRAVRDYPRFCRGR-PWPRL-----PEVIA 123 (249)
T ss_pred CCCcceEEEEEecChHHhhcCCCcchhHHhcccccccceEEeccCCCCCCCcccccChhhhcCC-CcccC-----CHHHH
Confidence 44 9999999999999995333 1 5653 29999999999987 3 68889773 11122 14455
Q ss_pred HHHhccCCCCccCCcchhhhhcceeeecCCCChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHh
Q 044555 86 TDMRYYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKIT 165 (222)
Q Consensus 86 ~~L~~~Wp~~~~~~~~fw~hEW~KHGtC~~~~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~ 165 (222)
++|...+|+.. |-+|||.|||||++++|.+||.++++|+++++++..+....- | ++ ++..+|+.||.+.+
T Consensus 124 ~~l~~vmPg~~-----L~~heW~KHGtC~g~s~~~YFa~~r~l~~~l~~p~~~~~~a~---~-~~-ls~~ei~~AF~~~n 193 (249)
T COG3719 124 SQLLDVMPGAG-----LERHEWRKHGTCSGLSQEAYFATTRRLFEELKLPPVRKLLAD---G-KT-LSRDEIEQAFDKAN 193 (249)
T ss_pred HHHhhcCCchh-----hhhhhHHhcCccCCCCHHHHHHHHHHHHHHhcCCcccccccc---c-cc-cCHHHHHHHHHHhC
Confidence 68888999863 999999999999999999999999999999999987665432 4 66 99999999999999
Q ss_pred CCc---ceEEEeeeCCCCCeEEEEEEEEecCCCceecC----CCCCcCCCCCCCC-eEecC
Q 044555 166 GHN---NTILKCYSSKRGHLLSEVMLCADADARNFIDC----NPEEFQQQNCGPD-ILFSK 218 (222)
Q Consensus 166 g~~---~~~l~C~~~~~~~~L~EI~iC~~~~~~~~i~C----p~~~~~~~~C~~~-i~~p~ 218 (222)
|+. .+.+.|..+ +|+||+||+|++.+ +++| |... .+ +|+.. +..|+
T Consensus 194 ~~~~~~~v~vsc~~~----~LtEl~Icl~~~~~-~~ac~~~~~~~~-~~-~C~~~~v~~~~ 247 (249)
T COG3719 194 GGLKGDAVRVSCQGN----YLTELRICLDKDLQ-NAACLADLPQPD-PG-NCRKTFVIAPG 247 (249)
T ss_pred CCCCchheEEEeecc----ceeeEEEEEccccc-cchhhccCCCCC-cc-cccccccccCC
Confidence 755 289999765 99999999999998 8999 7654 33 69955 44444
No 8
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=63.89 E-value=7.6 Score=26.14 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=15.5
Q ss_pred CchhHHHHHHHHHHHhc
Q 044555 1 MEIKLLFLSTLVLLVCC 17 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (222)
||-||++|.+|++.+.+
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 89999999999998877
No 9
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=63.34 E-value=4.8 Score=19.08 Aligned_cols=9 Identities=44% Similarity=1.188 Sum_probs=7.4
Q ss_pred ceEEeeeee
Q 044555 49 YFVIHGLWP 57 (222)
Q Consensus 49 ~ftIHGLWP 57 (222)
.|.+||.|-
T Consensus 4 ~~~L~~WWr 12 (14)
T PF08255_consen 4 TFSLHGWWR 12 (14)
T ss_pred EEEEeeEEE
Confidence 588999994
No 10
>cd03171 SORL_Dfx_classI Superoxide reductase-like (SORL) domain, class I; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=50.99 E-value=5.6 Score=28.17 Aligned_cols=9 Identities=56% Similarity=1.409 Sum_probs=6.6
Q ss_pred CceEEeeee
Q 044555 48 NYFVIHGLW 56 (222)
Q Consensus 48 ~~ftIHGLW 56 (222)
..=++||||
T Consensus 69 ~yCNlHGLW 77 (78)
T cd03171 69 AYCNLHGLW 77 (78)
T ss_pred EEeccccee
Confidence 334689999
No 11
>cd00524 SORL Superoxide reductase-like (SORL) domain; present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=50.91 E-value=5.7 Score=28.33 Aligned_cols=8 Identities=63% Similarity=1.597 Sum_probs=6.2
Q ss_pred ceEEeeee
Q 044555 49 YFVIHGLW 56 (222)
Q Consensus 49 ~ftIHGLW 56 (222)
.=++||||
T Consensus 78 yCN~HGlw 85 (86)
T cd00524 78 YCNLHGLW 85 (86)
T ss_pred Ecccceee
Confidence 34689999
No 12
>TIGR00332 neela_ferrous desulfoferrodoxin ferrous iron-binding domain. The N-terminal domain of desulfoferrodoxin is described in a separate model, dfx_rbo (TIGR00320).
Probab=45.52 E-value=7.3 Score=29.24 Aligned_cols=11 Identities=55% Similarity=1.084 Sum_probs=8.0
Q ss_pred CceEEeeeeec
Q 044555 48 NYFVIHGLWPV 58 (222)
Q Consensus 48 ~~ftIHGLWP~ 58 (222)
..=+|||||=+
T Consensus 90 ~YCNlHGLW~~ 100 (107)
T TIGR00332 90 MYCNIHGLWEY 100 (107)
T ss_pred EEecccccEEe
Confidence 34468999965
No 13
>cd03172 SORL_classII Superoxide reductase-like (SORL) domain, class II; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers.
Probab=45.39 E-value=7.5 Score=28.94 Aligned_cols=10 Identities=60% Similarity=1.268 Sum_probs=7.4
Q ss_pred ceEEeeeeec
Q 044555 49 YFVIHGLWPV 58 (222)
Q Consensus 49 ~ftIHGLWP~ 58 (222)
.=++||||=+
T Consensus 93 yCNlHGLW~~ 102 (104)
T cd03172 93 YCNIHGLWES 102 (104)
T ss_pred EcccceeEEe
Confidence 4468999964
No 14
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=42.37 E-value=8.1 Score=16.65 Aligned_cols=7 Identities=29% Similarity=1.085 Sum_probs=4.9
Q ss_pred hhhhhcc
Q 044555 102 LWEDQWF 108 (222)
Q Consensus 102 fw~hEW~ 108 (222)
-|+|+|.
T Consensus 2 HwS~~w~ 8 (10)
T PF00446_consen 2 HWSHGWK 8 (10)
T ss_pred ccccccC
Confidence 3778875
No 15
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=40.27 E-value=92 Score=22.31 Aligned_cols=42 Identities=5% Similarity=0.118 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHhCCcceEEEeeeCCCCCeEEEEEEEEecCCC
Q 044555 153 HKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADAR 195 (222)
Q Consensus 153 ~~~~i~~ai~~~~g~~~~~l~C~~~~~~~~L~EI~iC~~~~~~ 195 (222)
-..+|+++|++..|.. -.+++.-...-.+...+.+++|++++
T Consensus 49 ~~~~v~~~L~~lLg~~-~~~~~~v~tp~gy~iD~E~~lD~~~~ 90 (93)
T PF08368_consen 49 LQQEVQEALKSLLGGE-NYFRSNVITPYGYTIDFEIVLDKNGK 90 (93)
T ss_pred HHHHHHHHHHHHhCCc-cceEEccccCCCceEEEEEEECCCCC
Confidence 5789999999999877 56666432111288999999999976
No 16
>PF01880 Desulfoferrodox: Desulfoferrodoxin; InterPro: IPR002742 Desulfoferrodoxins contains two types of iron: an Fe-S4 site very similar to that found in desulfoferrodoxin from Desulfovibrio gigas, and an octahedral coordinated high-spin ferrous site most probably with nitrogen/oxygen-containing ligands. Due to this rather unusual combination of active centres, this novel protein is named desulfoferrodoxin []. This domain comprises essentially the full length of neelaredoxin (O50258 from SWISSPROT, []), a monomeric, blue, non-haem iron protein of D. gigas said to bind two iron atoms per monomer with identical spectral properties. Neelaredoxin was shown recently to have significant superoxide dismutase activity []. This domain is also found (in a form in which the distance between the motifs H[HWYF]IXW and CN[IL]HGXW is somewhat shorter) as the C-terminal domain of desulfoferrodoxin, which is said to bind a single ferrous iron atom. The N-terminal domain of desulfoferrodoxin is described by IPR004462 from INTERPRO.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1Y07_D 1DFX_A 3QZB_A 2AMU_A ....
Probab=38.16 E-value=7.3 Score=28.62 Aligned_cols=8 Identities=50% Similarity=1.194 Sum_probs=6.0
Q ss_pred EEeeeeec
Q 044555 51 VIHGLWPV 58 (222)
Q Consensus 51 tIHGLWP~ 58 (222)
+|||||=+
T Consensus 88 NlHGLW~~ 95 (96)
T PF01880_consen 88 NLHGLWEN 95 (96)
T ss_dssp TTTEEEEE
T ss_pred cccccEec
Confidence 47999953
No 17
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=37.53 E-value=28 Score=19.00 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhc
Q 044555 5 LLFLSTLVLLVCC 17 (222)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (222)
-.++++||||+..
T Consensus 6 FalivVLFILLiI 18 (24)
T PF09680_consen 6 FALIVVLFILLII 18 (24)
T ss_pred chhHHHHHHHHHH
Confidence 4677888887754
No 18
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=36.87 E-value=24 Score=29.80 Aligned_cols=49 Identities=20% Similarity=0.493 Sum_probs=29.6
Q ss_pred CchhHHHHHHHHHHHhc--------cCCCCcceEEEEEEcccccccccCCCCCC-C----CceEEeeeeecCC
Q 044555 1 MEIKLLFLSTLVLLVCC--------IARNNFDHFLLVQTWPHGYCERIPRNCSI-R----NYFVIHGLWPVTA 60 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~--------~~~~~fd~~~l~~~W~p~~C~~~~~~C~~-~----~~ftIHGLWP~~~ 60 (222)
||+.+.||++++++|+| .-++.--|+. +.++.+.+ | +-++-.||||...
T Consensus 128 ~amLIClIIIAVLfLICT~LfLSTVVLANKVS~LK-----------rskQ~gKRqpRSNGDFLASSgLWPa~s 189 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTLLFLSTVVLANKVSSLK-----------RSKQVGKRQPRSNGDFLASSGLWPAES 189 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhccCCCcccceeeccccCcccc
Confidence 77888888888888877 1122222221 11221222 2 7788899999966
No 19
>TIGR00320 dfx_rbo desulfoferrodoxin. This protein is described in some articles as rubredoxin oxidoreductase (rbo), and its gene shares an operon with the rubredoxin gene in Desulfovibrio vulgaris Hildenborough.
Probab=36.65 E-value=12 Score=28.83 Aligned_cols=11 Identities=45% Similarity=1.032 Sum_probs=7.5
Q ss_pred CceEEeeeeec
Q 044555 48 NYFVIHGLWPV 58 (222)
Q Consensus 48 ~~ftIHGLWP~ 58 (222)
..=++||||=+
T Consensus 114 ~yCNlHGLW~~ 124 (125)
T TIGR00320 114 EYCNIHGHWKA 124 (125)
T ss_pred EEccccceEEc
Confidence 33468999953
No 20
>COG2033 Desulfoferrodoxin [Energy production and conversion]
Probab=36.06 E-value=15 Score=28.26 Aligned_cols=11 Identities=55% Similarity=1.111 Sum_probs=7.8
Q ss_pred CceEEeeeeec
Q 044555 48 NYFVIHGLWPV 58 (222)
Q Consensus 48 ~~ftIHGLWP~ 58 (222)
..=.|||||-.
T Consensus 111 ~yCNiHGLWe~ 121 (126)
T COG2033 111 SYCNIHGLWEG 121 (126)
T ss_pred eecceeeeeec
Confidence 33459999965
No 21
>cd07885 RHD-n_RelA N-terminal sub-domain of the Rel homology domain (RHD) of RelA. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD domain of the RelA family of transcription factors, categorized as a class II member of the NF-kappa B family. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the ankyrin-repeat containing inhibitory protein I-kappa B, which
Probab=35.67 E-value=15 Score=29.88 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=42.6
Q ss_pred hhhhhcceeeecCC-CChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHh--CCcceE-EEeeeC
Q 044555 102 LWEDQWFAHGSDSP-LVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKIT--GHNNTI-LKCYSS 177 (222)
Q Consensus 102 fw~hEW~KHGtC~~-~~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~--g~~~~~-l~C~~~ 177 (222)
|--.+ .|+|.|.. ..+.++ .-.|.+-|| +. ++.++|.++|.... +.+ |. +... .
T Consensus 72 LVGK~-C~~Gvc~v~v~p~~~-------------~~~F~nLGI-----qc-V~KKdv~e~L~~R~~~~~~-pf~~~~~-~ 129 (169)
T cd07885 72 LVGKD-CKDGYYEAELSPDRC-------------IHSFQNLGI-----QC-VKKRDLEQAVSQRIQTNNN-PFNVPIE-E 129 (169)
T ss_pred hcccc-cCCcEEEEEeCCCCc-------------EEEecccee-----EE-EEeccHHHHHHHHHHhcCC-CCccchh-H
Confidence 44444 57899987 454431 112455666 66 88889999888765 333 32 2111 1
Q ss_pred CCCC-eEEEEEEEEecC
Q 044555 178 KRGH-LLSEVMLCADAD 193 (222)
Q Consensus 178 ~~~~-~L~EI~iC~~~~ 193 (222)
...+ .|..||+||..-
T Consensus 130 ~~~~iDLn~VRLcFqaf 146 (169)
T cd07885 130 QRADYDLNAVRLCFQVT 146 (169)
T ss_pred hhcccchhhEEEEEEEE
Confidence 1233 899999999765
No 22
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=34.80 E-value=52 Score=21.14 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=19.2
Q ss_pred HHHHHhhCCCCCCCCCccccHHHHHHHHHHHhCCc
Q 044555 134 LVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHN 168 (222)
Q Consensus 134 ~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~ 168 (222)
+..+|+.++. .+ +|..+|+.++++.+|..
T Consensus 9 i~~iL~~~dl-----~~-vT~k~vr~~Le~~~~~d 37 (54)
T PF08766_consen 9 IREILREADL-----DT-VTKKQVREQLEERFGVD 37 (54)
T ss_dssp HHHHHTTS-G-----GG---HHHHHHHHHHH-SS-
T ss_pred HHHHHHhCCH-----hH-hhHHHHHHHHHHHHCCC
Confidence 4567877764 45 89999999999999864
No 23
>PRK14746 RepA leader peptide Tap; Provisional
Probab=30.77 E-value=60 Score=17.82 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=15.9
Q ss_pred CchhHHHHHHHHHHHhccCCCCcc
Q 044555 1 MEIKLLFLSTLVLLVCCIARNNFD 24 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~fd 24 (222)
|-+|++.+.+..+|.+..++|.-|
T Consensus 1 M~RK~Q~l~~~lLLpCniSAg~~d 24 (26)
T PRK14746 1 MFRKVQYLLRLLLLPCNISAGRCD 24 (26)
T ss_pred CcHHHHHHHHHHHhcceecccccC
Confidence 677888877666555556666554
No 24
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=30.63 E-value=63 Score=22.09 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHhcCHHHHHhhCCCCCCC
Q 044555 118 PLDYFQRTIQLRKLVDLVKALGDVGIVPRY 147 (222)
Q Consensus 118 ~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~ 147 (222)
...|| .+..++.++.+.|.++|+++ |
T Consensus 32 ~~~~f---~~~L~~~Gv~~~L~~~G~~~-G 57 (69)
T TIGR03595 32 NLRRF---ARKLKKLGVEDALRKAGAKD-G 57 (69)
T ss_pred HHHHH---HHHHHHCCHHHHHHHcCCCC-C
Confidence 44555 45567889999999999998 5
No 25
>cd07886 RHD-n_RelB N-terminal sub-domain of the Rel homology domain (RHD) of the reticuloendotheliosis viral oncogene homolog B (RelB) protein. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the RelB family of transcription factors, categorized as class II NF-kappa B family members. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the anky
Probab=29.92 E-value=43 Score=27.35 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=41.3
Q ss_pred hhhhhcceeeecCC-CChHH-HHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHh--CCcceEEEeeeC
Q 044555 102 LWEDQWFAHGSDSP-LVPLD-YFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKIT--GHNNTILKCYSS 177 (222)
Q Consensus 102 fw~hEW~KHGtC~~-~~~~~-YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~--g~~~~~l~C~~~ 177 (222)
|--.+ .|+|.|.. .++.+ + .-.|.+-|| +. ++.++|.++|.+.. +.+ |.-.=...
T Consensus 74 LVGK~-C~~Gvc~v~v~p~~~~-------------~~~F~nLGI-----qc-v~KK~v~e~L~~R~~~~~d-pf~~~~~~ 132 (172)
T cd07886 74 LVGKD-CPNGICQVTLNPHSSP-------------RHSFSNLGI-----QC-VRKREIEAAIETRLQLNID-PFKAGSLK 132 (172)
T ss_pred ccccc-CCCceEEEEeCCCCcc-------------EEEEcCcee-----Ee-eehhhhHHHHHHHHHccCC-cccccccc
Confidence 44444 57899986 44432 1 112445566 66 88889988887755 222 21100011
Q ss_pred CCCC-eEEEEEEEEecCC
Q 044555 178 KRGH-LLSEVMLCADADA 194 (222)
Q Consensus 178 ~~~~-~L~EI~iC~~~~~ 194 (222)
.... .|..||+||..-.
T Consensus 133 ~~~~~DLn~VRLCFqafl 150 (172)
T cd07886 133 NHEEVDMNVVRLCFQASY 150 (172)
T ss_pred cccccccccEEEEEEEEE
Confidence 1123 8999999998654
No 26
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=29.39 E-value=68 Score=21.89 Aligned_cols=27 Identities=33% Similarity=0.273 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHhhCCCCCCC
Q 044555 117 VPLDYFQRTIQLRKLVDLVKALGDVGIVPRY 147 (222)
Q Consensus 117 ~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~ 147 (222)
....||+. ..++.++.+.|.++|+++ |
T Consensus 31 e~~~rf~~---~L~~~Gv~~~L~~~G~~~-G 57 (69)
T PF09269_consen 31 ESLRRFQR---KLKKMGVEKALRKAGAKE-G 57 (69)
T ss_dssp GGHHHHHH---HHHHTTHHHHHHTTT--T-T
T ss_pred HHHHHHHH---HHHHCCHHHHHHHcCCCC-C
Confidence 34566654 456889999999999998 5
No 27
>cd07884 RHD-n_Relish N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Relish protein, in which the RHD domain co-occurs with C-terminal ankyrin repeats. Family members are sometimes referred to as p110 or p68 (proteolytically processed form). Relish is an NF-kappa B-like transcription factor, which plays a role in mediating innate immunity in Drosophila. It is activated via the Imd (immune deficiency) pathway, which triggers phosphorylation of Relish. IKK-dependent proteolytic cleavage of Relish (which involves Dredd) results in a smaller active form (without the C-terminal ankyrin repeats), which is transported into the nucleus and functions as a transactivator.
Probab=28.53 E-value=34 Score=27.61 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=26.8
Q ss_pred HhhCCCCCCCCCccccHHHHHHHHHHHhCCcceEEEeeeCCCCC-eEEEEEEEEecCC
Q 044555 138 LGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGH-LLSEVMLCADADA 194 (222)
Q Consensus 138 L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~~~~l~C~~~~~~~-~L~EI~iC~~~~~ 194 (222)
|.+-|| +. ++.++|.++|.+. .. .|.+||+||..-.
T Consensus 100 F~nLGI-----qc-v~Kk~v~~~L~~r---------------~~idLn~VRLcFqafl 136 (159)
T cd07884 100 FQNMGI-----IH-TAKKNIPEELYKK---------------KNMNLNQVVLRFQAFA 136 (159)
T ss_pred eCCcce-----EE-EEecchHHHHhhh---------------cccCcccEEEEEEEEE
Confidence 455666 66 8888999998663 12 8999999998643
No 28
>PF01328 Peroxidase_2: Peroxidase, family 2; InterPro: IPR000028 Chloroperoxidase (CPO), also known as Heme haloperoxidase, is a ~250 residue heme-containing glycoprotein that is secreted by various fungi. Chloroperoxidase was first identified in Caldariomyces fumago where it catalyzes the hydrogen peroxide-dependent chlorination of cyclopentanedione during the biosynthesis of the antibiotic caldarioymcin. Additionally, heme haloperoxidase catalyzes the iodination and bromination of a wide range of substrates. Besides performing H2O2-dependent halogenation reactions, the enzyme catalyzes dehydrogenation reactions. Chloroperoxidase also functions as a catalase, facilitating the decomposition of hydrogen peroxide to oxygen and water. Furthermore, chloroperoxidase catalyzes P450-like oxygen insertion reactions. The capability of chloroperoxidase to perform these diverse reactions makes it one of the most versatile of all known heme proteins [, ]. Despite functional similarities with other heme enzymes, chloroperoxidase folds into a novel tertiary structure dominated by eight helical segments []. Structurally, chloroperoxidase is unique, but it shares features with both peroxidases and P450 enzymes. As in cytochrome P450 enzymes, the proximal heme ligand is a cysteine, but similar to peroxidases, the distal side of the heme is polar. However, unlike other peroxidases, the normally conserved distal arginine is lacking and the catalytic acid base is a glutamic acid and not a histidine [].; GO: 0004601 peroxidase activity; PDB: 2J5M_A 2J19_A 2CIW_A 2CJ0_A 2CIV_A 2CPO_A 1CPO_A 2CJ2_A 2J18_A 2CIZ_A ....
Probab=26.49 E-value=70 Score=28.69 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=26.7
Q ss_pred hcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHhCCc
Q 044555 131 LVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHN 168 (222)
Q Consensus 131 ~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~ 168 (222)
=....+.|++.|+.|.+-+. ++..++.+++.+.+|..
T Consensus 49 PCPgLNtLANHGyLPrnG~~-It~~~l~~al~~~~n~~ 85 (317)
T PF01328_consen 49 PCPGLNTLANHGYLPRNGRN-ITVEQLINALQEGYNLS 85 (317)
T ss_dssp S-HHHHHHHHTTSS-TT-EE-E-HHHHHHHHHHHH-B-
T ss_pred CCccHHHHHhcCccCCCCcc-ccHHHHHHHHHHHhCCC
Confidence 34577899999999986344 89999999999999866
No 29
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=26.14 E-value=1.1e+02 Score=18.02 Aligned_cols=29 Identities=21% Similarity=0.075 Sum_probs=21.1
Q ss_pred CHHHHHhhCCCCCCCCCccccHHHHHHHHHH
Q 044555 133 DLVKALGDVGIVPRYKGFTHHKSTYRQGIMK 163 (222)
Q Consensus 133 n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~ 163 (222)
++-+.|.+.||..+. .. .+.+++.+..++
T Consensus 8 ~L~~wL~~~gi~~~~-~~-~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 8 DLKSWLKSHGIPVPK-SA-KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHcCCCCCC-CC-CCHHHHHHHHHH
Confidence 356789999998753 32 488898887765
No 30
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.09 E-value=60 Score=18.08 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhc
Q 044555 5 LLFLSTLVLLVCC 17 (222)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (222)
..++++|||++..
T Consensus 8 f~livVLFILLII 20 (26)
T TIGR01732 8 FALIVVLFILLVI 20 (26)
T ss_pred hHHHHHHHHHHHH
Confidence 4567777777654
No 31
>PRK14745 RepA leader peptide Tap; Provisional
Probab=25.16 E-value=1.1e+02 Score=16.75 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=15.1
Q ss_pred CchhHHHHHHHHHHHhc-cCCCCcc
Q 044555 1 MEIKLLFLSTLVLLVCC-IARNNFD 24 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~fd 24 (222)
|-++++.+.+--.|++| .++|.-|
T Consensus 1 mlrk~qylfl~hlllpcnisagr~d 25 (26)
T PRK14745 1 MLRKFQYLFLWHLLLPCIVSAGRSD 25 (26)
T ss_pred ChHHHHHHHHHHHHhhccccccccC
Confidence 56777777655566666 5555544
No 32
>PRK13683 hypothetical protein; Provisional
Probab=22.90 E-value=1.2e+02 Score=21.99 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCcceEEEeeeCCCCC------eEEEEEEEEecCC
Q 044555 154 KSTYRQGIMKITGHNNTILKCYSSKRGH------LLSEVMLCADADA 194 (222)
Q Consensus 154 ~~~i~~ai~~~~g~~~~~l~C~~~~~~~------~L~EI~iC~~~~~ 194 (222)
.++|++|++...... .+|+|.+...++ .+.-|.+. +|++
T Consensus 29 Yq~I~~am~sg~P~l-lELtCek~~~KkiavlssEi~aVqi~-eKs~ 73 (87)
T PRK13683 29 YQQIRQAMRSGNPRL-LELTCEKVEDKKIAVLSSEISAVQIY-EKSG 73 (87)
T ss_pred HHHHHHHHhcCCCcE-EEEEecCcCCcEEEEEeeeeEEEEEE-eccC
Confidence 568888887755555 799998754332 44445554 5554
No 33
>PRK14758 hypothetical protein; Provisional
Probab=22.17 E-value=1e+02 Score=17.23 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHHHHhc
Q 044555 1 MEIKLLFLSTLVLLVCC 17 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (222)
|-.|-.|=++|+++|+|
T Consensus 1 Mv~RYrFEliLivlIlC 17 (27)
T PRK14758 1 MVGRYRFEFILIILILC 17 (27)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 44566666777777777
No 34
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=21.12 E-value=1.4e+02 Score=21.14 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=30.9
Q ss_pred CccccHHHHHHHHHHHhCCcceEEEeeeCCCCCeEEEEEEEEecCCCceec
Q 044555 149 GFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADARNFID 199 (222)
Q Consensus 149 ~~~~~~~~i~~ai~~~~g~~~~~l~C~~~~~~~~L~EI~iC~~~~~~~~i~ 199 (222)
+. |+.++++++|.+.||..+---.|+... -.+.|+.--+.+.++ ++.
T Consensus 16 ~~-~t~~~L~~~i~~~FG~~arFhTCSa~~--m~a~~Li~FL~~kgK-fi~ 62 (77)
T TIGR03853 16 EP-YTRESLKAAIEQKFGEDARFHTCSAEG--MTADELLQFLLKKGK-FIE 62 (77)
T ss_pred CC-cCHHHHHHHHHHHhCCCceEeeccccc--CCHHHHHHHHHHCCC-Eee
Confidence 55 999999999999999884566897541 134444444444444 443
No 35
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=20.01 E-value=1.5e+02 Score=21.01 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=23.1
Q ss_pred CccccHHHHHHHHHHHhCCcceEEEeeeC
Q 044555 149 GFTHHKSTYRQGIMKITGHNNTILKCYSS 177 (222)
Q Consensus 149 ~~~~~~~~i~~ai~~~~g~~~~~l~C~~~ 177 (222)
+. |+.++++++|.+.||..+---.|+..
T Consensus 18 ~~-~t~~~L~~ai~~~FG~~arFhTCSae 45 (78)
T PF10678_consen 18 NP-YTKEELKAAIIEKFGEDARFHTCSAE 45 (78)
T ss_pred CC-cCHHHHHHHHHHHhCCCceEEecCCC
Confidence 45 99999999999999987445689754
Done!