Query 044555
Match_columns 222
No_of_seqs 108 out of 1239
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 07:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iyb_A Ribonuclease, ribonucle 100.0 1.5E-58 5.1E-63 386.6 19.4 192 18-219 3-208 (208)
2 1vcz_A RNAse NGR3; hydrolase, 100.0 3E-58 1E-62 387.1 18.4 195 18-220 3-209 (217)
3 1sgl_A Trichomaglin; S-like ri 100.0 1.3E-56 4.6E-61 375.0 17.6 187 20-221 2-209 (209)
4 1ioo_A SF11-RNAse; SELF-incomp 100.0 2.9E-56 9.8E-61 369.6 16.9 182 22-218 1-196 (196)
5 1ucd_A Ribonuclease MC; alpha 100.0 7.4E-56 2.5E-60 365.5 16.0 180 23-216 1-190 (190)
6 1jy5_A CALSEPRRP; RNAse, alpha 100.0 1.9E-55 6.4E-60 368.8 17.8 186 20-221 2-209 (212)
7 1iqq_A S3-RNAse; japanese PEAR 100.0 1.8E-55 6.3E-60 365.8 15.8 185 23-216 1-200 (200)
8 3t0o_A Ribonuclease T2, ribonu 100.0 8.8E-54 3E-58 363.0 18.1 194 18-221 5-229 (238)
9 1bol_A Protein (ribonuclease R 100.0 1.8E-50 6.1E-55 340.9 13.9 179 22-218 23-221 (222)
10 2pqx_A Ribonuclease I; hydrola 100.0 1E-48 3.5E-53 334.5 7.8 190 18-220 6-244 (245)
11 3d3z_A Actibind; RNAse, hydrol 100.0 6.2E-47 2.1E-51 323.7 14.2 185 22-221 26-237 (247)
12 4dvk_A E(RNS) glycoprotein; T2 99.8 1.4E-22 4.7E-27 160.5 1.1 71 48-128 25-97 (165)
13 2ciw_A Chloroperoxidase; oxido 38.1 26 0.00087 30.0 3.6 35 133-168 31-65 (299)
14 3ktp_B Trinucleotide repeat-co 32.1 11 0.00038 19.4 0.2 8 30-37 4-11 (22)
15 1dqi_A SOR, superoxide reducta 31.5 6.9 0.00024 29.2 -0.9 9 50-58 111-119 (124)
16 1y07_A Desulfoferrodoxin (RBO) 29.7 7.8 0.00027 28.9 -0.9 8 51-58 120-127 (128)
17 1vzi_A Desulfoferrodoxin; ferr 29.6 7.8 0.00027 28.8 -0.9 10 49-58 115-124 (126)
No 1
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A
Probab=100.00 E-value=1.5e-58 Score=386.60 Aligned_cols=192 Identities=27% Similarity=0.581 Sum_probs=163.8
Q ss_pred cCCCCcceEEEEEEcccccccccCCCCCCC------CceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHh
Q 044555 18 IARNNFDHFLLVQTWPHGYCERIPRNCSIR------NYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMR 89 (222)
Q Consensus 18 ~~~~~fd~~~l~~~W~p~~C~~~~~~C~~~------~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~ 89 (222)
.++++||||+|||+|||+|| ..++.|+.| ..||||||||++. +++++|+..+. ++.....++.++|+
T Consensus 3 ~~~~~fD~~~l~l~Wpp~~C-~~~~~cc~p~~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~----~~~~~i~~l~~~L~ 77 (208)
T 1iyb_A 3 EFAQDFDFFYFVQQWPGSYC-DTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSP----YDQSQVSDLISRMQ 77 (208)
T ss_dssp CCCCSCSEEEEEEECHHHHS-SSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCBSCCTTSC----CCGGGGGGGHHHHH
T ss_pred ccCCCceEEEEEEeCChHHh-cCCCCCCCCCCCCCCCCCEEccccCCCCCCCCCCCCCCCCC----CCchhcchhhhHhh
Confidence 46799999999999999999 566667653 7999999999976 46889976421 11111257899999
Q ss_pred ccCCCCc---cCCcchhhhhcceeeecCCC--ChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHH
Q 044555 90 YYWPGLT---KTDLNLWEDQWFAHGSDSPL--VPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKI 164 (222)
Q Consensus 90 ~~Wp~~~---~~~~~fw~hEW~KHGtC~~~--~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~ 164 (222)
++||++. .++..||+|||+|||||++. +|.+||++|++|++++|++++|+++||+|++ ++ |++++|++||+++
T Consensus 78 ~~Wp~l~~~~~~~~~fW~hEw~KHGTC~~~~~~q~~YF~~a~~l~~~~~~~~~L~~~gI~P~~-~~-~t~~~I~~Ai~~~ 155 (208)
T 1iyb_A 78 QNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQGAGIHPDG-GF-YSLNSIKNAIRSA 155 (208)
T ss_dssp HHSCCCCSSCCCSHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHHCCHHHHHHHTTCCSSS-CE-EEHHHHHHHHHHH
T ss_pred ccCCCcccCCCCcchHHHhhccCCeeeCccccCHHHHHHHHHHHHHHcChHHHHHHCCcccCC-ce-EeHHHHHHHHHHH
Confidence 9999996 23457999999999999996 9999999999999999999999999999965 67 9999999999999
Q ss_pred hCCcceEEEeeeCCCCC-eEEEEEEEEecCCCceecCCCCCcCCCCCCCCeEecCC
Q 044555 165 TGHNNTILKCYSSKRGH-LLSEVMLCADADARNFIDCNPEEFQQQNCGPDILFSKG 219 (222)
Q Consensus 165 ~g~~~~~l~C~~~~~~~-~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C~~~i~~p~~ 219 (222)
+|.. |.|+|.++++++ +|.||+||||+++.++|+||... . .+|+++|.||+|
T Consensus 156 ~g~~-p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~-~-~~C~~~i~~p~f 208 (208)
T 1iyb_A 156 IGYA-PGIECNVDESGNSQLYQIYICVDGSGSNLIECPIFP-R-GKCGSSIEFPTF 208 (208)
T ss_dssp HSSC-CEEEEEECTTCCEEEEEEEEEEETTSSSBCCCSCCC-C-CCCCSEEECCCC
T ss_pred hCCC-eEEEEeeCCCCCeEEEEEEEEecCCCCeeecCCCCC-C-CCCCCCcCcCCC
Confidence 9999 999999876655 99999999999976699999743 2 379999999997
No 2
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A*
Probab=100.00 E-value=3e-58 Score=387.09 Aligned_cols=195 Identities=31% Similarity=0.618 Sum_probs=164.0
Q ss_pred cCCCCcceEEEEEEcccccccccCCCCCCC------CceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHh
Q 044555 18 IARNNFDHFLLVQTWPHGYCERIPRNCSIR------NYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMR 89 (222)
Q Consensus 18 ~~~~~fd~~~l~~~W~p~~C~~~~~~C~~~------~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~ 89 (222)
.++++||||+|||+|||+|| ..++.|+.| ..||||||||++. +++++|+... -++.....+|++.|+
T Consensus 3 ~~~~~fDy~~l~l~Wpp~~C-~~~~~cc~p~~~~p~~~ftIHGLWP~~~~g~~p~~C~~~~----~~~~~~~~~l~~~L~ 77 (217)
T 1vcz_A 3 EFAQDFDFFYFVQQWPASYC-DTRRSCCYPTTGKPDEDFSIHGLWPNYENGKWPQNCDRES----SLDESEISDLISTME 77 (217)
T ss_dssp --CCSCSEEEEEEECHHHHS-SSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCCCCCTTC----CCCGGGGGGGHHHHH
T ss_pred ccCCCccEEEEEEeCChhhc-CCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCCCCCCCcc----CCChhhhhhhhhhhh
Confidence 35799999999999999999 566667653 7999999999876 4689997642 122222267889999
Q ss_pred ccCCCCcc---CCcchhhhhcceeeecCCCChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHhC
Q 044555 90 YYWPGLTK---TDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITG 166 (222)
Q Consensus 90 ~~Wp~~~~---~~~~fw~hEW~KHGtC~~~~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g 166 (222)
++||++.. ++..||+|||+|||||++.+|.+||++|++|++++|++++|+++||+|+..++ |++++|++||++++|
T Consensus 78 ~~Wp~l~~~~~~~~~fW~hEw~KHGTC~~~~~~~YF~~a~~l~~~~n~~~~L~~~gI~Ps~g~~-~t~~~I~~Ai~~~~g 156 (217)
T 1vcz_A 78 KNWPSLACPSSDGVRFWSHEWLKHGTCSALGERAYFQAALDFRKKSNLLENLKNAEITPRNGEH-YTLESIKKAIEEGVG 156 (217)
T ss_dssp HHSCCCSSSCCCSHHHHHHHHHHTGGGTTSCHHHHHHHHHHHHHHHCHHHHHHHTTCCCEEEEE-EEHHHHHHHHHHHHS
T ss_pred ccCcccccCCCCcchHHhhhccCCeecCCCCHHHHHHHHHHHHHHcccHHHHHHCCCccCcCcc-ccHHHHHHHHHHHHC
Confidence 99999962 23569999999999999999999999999999999999999999999963267 999999999999999
Q ss_pred CcceEEEeeeCCCCC-eEEEEEEEEecCCCceecCCCCCcCCCCCCCCeEecCCC
Q 044555 167 HNNTILKCYSSKRGH-LLSEVMLCADADARNFIDCNPEEFQQQNCGPDILFSKGK 220 (222)
Q Consensus 167 ~~~~~l~C~~~~~~~-~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C~~~i~~p~~~ 220 (222)
.. |.|+|..+.+++ +|.||+|||++++.++|+||... .+++|++.|.||+|+
T Consensus 157 ~~-p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~-~~~~C~~~i~~p~~~ 209 (217)
T 1vcz_A 157 HS-PYIECNVDTQGNHQIYQVYLCVDKTATDFIDCPIFP-HGRGCGSKIEFPPFS 209 (217)
T ss_dssp SC-CEEEEEECTTSCEEEEEEEEEEETTSSSEECCSSCC-CCCCCCSEEEECCC-
T ss_pred CC-eEEEEeecCCCCeEEEEEEEEecCCCCeeeeCCCCC-CCCCCCCCeEEcCCC
Confidence 99 999999876655 99999999999986799999744 334799999999985
No 3
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1
Probab=100.00 E-value=1.3e-56 Score=375.02 Aligned_cols=187 Identities=25% Similarity=0.420 Sum_probs=156.0
Q ss_pred CCCcceEEEEEEccccccccc------CCCCCC--CCceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHh
Q 044555 20 RNNFDHFLLVQTWPHGYCERI------PRNCSI--RNYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMR 89 (222)
Q Consensus 20 ~~~fd~~~l~~~W~p~~C~~~------~~~C~~--~~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~ 89 (222)
+|+||||+|||+|||+||... +.+|.. +..||||||||++. +++++|...+ ++.....++.++|+
T Consensus 2 ~~~fD~~~l~l~Wpp~~C~~~~~~~~~~~~C~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~-----~~~~~~~~l~~~L~ 76 (209)
T 1sgl_A 2 EREFDYFILALQWAGTSCRSGGACCPYNGCCKADSPTQFTIHGLRPEYSGGERPSCCTGGS-----FDPDEIMPFFGKLV 76 (209)
T ss_dssp --CCSEEEEEEEEHHHHTSSCCCCCTTBTTCSSSCCCCEEEEEEEECCCSSCCCCCCSCCC-----CCGGGGGGGHHHHH
T ss_pred CCCceEEEEEEECCHHHhcCCccCCCCCCCCCCCCCCCcEEccccCCCCCCCCCCCCCCCc-----CCchhhhhHHHHHH
Confidence 589999999999999999533 245764 38999999999975 4689997531 11111257899999
Q ss_pred ccCCCCc--------cCCcchhhhhcceeeecCCC---ChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHH
Q 044555 90 YYWPGLT--------KTDLNLWEDQWFAHGSDSPL---VPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYR 158 (222)
Q Consensus 90 ~~Wp~~~--------~~~~~fw~hEW~KHGtC~~~---~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~ 158 (222)
++||++. ..+..||+|||+|||||++. +|.+||++|++|++++|++++|+++||+|+..++ |++++|+
T Consensus 77 ~~Wp~l~~~~~~~~~~~~~~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~L~~~~~l~~~L~~~gI~P~~g~~-yt~~~I~ 155 (209)
T 1sgl_A 77 EYWPTYRCALEQSCNNRKEILWGQQYEKHGTCASPVIKGEWNYFKKTLKLFMKYNVDKALEDAGIVASNSKM-YDLKDIV 155 (209)
T ss_dssp HHSCBSCSSCEECGGGCEECHHHHHHHHTGGGGTTTSCSHHHHHHHHHHHHHHTCHHHHHHHHTCCCCSSCE-EEHHHHH
T ss_pred ccCcCcccccccccCCCcchHHHHhhhcCccccccccccHHHHHHHHHHHHHHcChHHHHHHCCCcCCCCcc-ccHHHHH
Confidence 9999995 23456999999999999995 9999999999999999999999999999974367 9999999
Q ss_pred HHHHHHhCCcceEEEeeeCCCCCeEEEEEEEEecCCCceecCCCCCcCCCCCCCCeEecCCCC
Q 044555 159 QGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADARNFIDCNPEEFQQQNCGPDILFSKGKT 221 (222)
Q Consensus 159 ~ai~~~~g~~~~~l~C~~~~~~~~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C~~~i~~p~~~~ 221 (222)
+||++++|+. |.|+|.++ + +|.||+|||+++.+ +|+|+. . .+|+..|.||++++
T Consensus 156 ~Ai~~~~g~~-p~l~C~~~--~-~L~Ev~iC~~~~~~-~i~C~~---~-~~C~~~i~~p~~~~ 209 (209)
T 1sgl_A 156 VAVESAVGAR-PKLRCDEE--G-LVQKLSLCFDKDFK-PRDCVQ---V-GSCPRYVSLPEIPD 209 (209)
T ss_dssp HHHHHHHSSC-CEEEECTT--S-BEEEEEEEEETTCC-EECCCC---C-CCSCSEEECCCCCC
T ss_pred HHHHHHhCCC-eEEEECCC--C-eEEEEEEEeCCCcc-EeCCCC---C-CCCCCCeEeCCCCC
Confidence 9999999999 99999753 2 99999999999976 999952 2 36999999999874
No 4
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1
Probab=100.00 E-value=2.9e-56 Score=369.56 Aligned_cols=182 Identities=25% Similarity=0.502 Sum_probs=155.9
Q ss_pred CcceEEEEEEcccccccccCCCCCC--CCceEEeeeeecCC-CCCCCCCcccccccccccccCCCchHHHhccCCCCccC
Q 044555 22 NFDHFLLVQTWPHGYCERIPRNCSI--RNYFVIHGLWPVTA-KGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTKT 98 (222)
Q Consensus 22 ~fd~~~l~~~W~p~~C~~~~~~C~~--~~~ftIHGLWP~~~-~~~~~c~~~~~~~~~~~~~~~~~l~~~L~~~Wp~~~~~ 98 (222)
+||||+|||+|||+|| ..+ +|.. |..||||||||++. +++++|.... -++.... ++.++|+++||++..+
T Consensus 1 ~fDy~~l~l~Wpp~~C-~~~-~C~~~~p~~ftIHGLWP~~~~~~p~~C~~~~----~~~~~~~-~l~~~L~~~Wp~l~~~ 73 (196)
T 1ioo_A 1 DFEYLQLVLTWPASFC-YAN-HCERIAPNNFTIHGLWPDNVKTRLHNCKPKP----TYSYFTG-KMLNDLDKHWMQLKFE 73 (196)
T ss_dssp CCSEEEEEEECHHHHH-HHS-CCSSCCCSSCEEEEEEEECSSSCCCSCSSCC----CCCCCCH-HHHHHHHHHTCCTTSC
T ss_pred CceEEEEEeeCCHHHc-cCC-CCCCCCCCCcEEeceEECCCCCCCCcCCCCC----CcCchHH-HHHHHHhccCCCCCcc
Confidence 5999999999999999 444 5977 48999999999987 5689997642 1222223 7889999999999865
Q ss_pred ------CcchhhhhcceeeecCCC--ChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHhCCcce
Q 044555 99 ------DLNLWEDQWFAHGSDSPL--VPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNT 170 (222)
Q Consensus 99 ------~~~fw~hEW~KHGtC~~~--~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~~~ 170 (222)
+..||+|||+|||||++. +|.+||++|++|++++|++++|+++||+|+ .+ |++++|++||++++|.. |
T Consensus 74 ~~~~~~~~~fW~hEw~KHGTC~~~~~~q~~YF~~a~~L~~~~n~~~~L~~~gI~P~--~~-~t~~~I~~Ai~~~~g~~-p 149 (196)
T 1ioo_A 74 QDYGRTEQPSWKYQYIKHGSCCQKRYNQNTYFGLALRLKDKFDLLRTLQTHRIIPG--SS-YTFQDIFDAIKTVSQEN-P 149 (196)
T ss_dssp HHHHHHHCHHHHHHHHHTGGGCTTTCCHHHHHHHHHHHHHTCCHHHHHHHTTCCTT--EE-ECHHHHHHHHHHHHSSC-C
T ss_pred cccccccchHHHhhCcCCcCcCCCcCCHHHHHHHHHHHHHHCCHHHHHHHCCCccC--CC-cCHHHHHHHHHHHhCCC-e
Confidence 246999999999999995 999999999999999999999999999994 46 99999999999999999 9
Q ss_pred EEEeeeCCCC-CeEEEEEEEEecCCCceecCCCCCcCCCCC--CCCeEecC
Q 044555 171 ILKCYSSKRG-HLLSEVMLCADADARNFIDCNPEEFQQQNC--GPDILFSK 218 (222)
Q Consensus 171 ~l~C~~~~~~-~~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C--~~~i~~p~ 218 (222)
.|+|..++++ .+|.||+||||++++++|+||.. .+| +..|.||+
T Consensus 150 ~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~----~~C~~~~~i~fp~ 196 (196)
T 1ioo_A 150 DIKCAEVTKGTPELYEIGICFTPNADSMFRCPQS----DTCDKTAKVLFRR 196 (196)
T ss_dssp EEEEECSSTTCCEEEEEEEEECTTSSSEECCCCC----CCSCTTSCEEECC
T ss_pred EEEeeecCCCCeEEEEEEEEEeCCCCEEeCCcCC----CCCCCCCCeecCC
Confidence 9999876443 39999999999999889999963 269 46799985
No 5
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A*
Probab=100.00 E-value=7.4e-56 Score=365.50 Aligned_cols=180 Identities=25% Similarity=0.555 Sum_probs=153.3
Q ss_pred cceEEEEEEcccccccccC--CCCCC--CCceEEeeeeecCC-CCCCCCCcccccccccccccCCCchHHHhccCCCCcc
Q 044555 23 FDHFLLVQTWPHGYCERIP--RNCSI--RNYFVIHGLWPVTA-KGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTK 97 (222)
Q Consensus 23 fd~~~l~~~W~p~~C~~~~--~~C~~--~~~ftIHGLWP~~~-~~~~~c~~~~~~~~~~~~~~~~~l~~~L~~~Wp~~~~ 97 (222)
||||+|||+|||+||+ .+ .+|.. |..||||||||+.. +++++|+..+ ++....+++.++|+++||++..
T Consensus 1 fDy~~l~l~Wpp~~C~-~~~~~~C~~~~p~~ftIHGLWPn~~~~~p~~C~~~~-----~~~~~~~~l~~~L~~~Wp~l~~ 74 (190)
T 1ucd_A 1 FDSFWFVQQWPPAVCS-FQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSP-----FDITKISHLQSQLNTLWPNVLR 74 (190)
T ss_dssp CCEEEEEEECHHHHHH-TCCSSCCGGGGCCSCEEEEEEEEETTEECCSCSCCC-----CCGGGGGGGHHHHHHHSCCSSS
T ss_pred CcEEEEEEECCHHHhc-cCCCCCCCCCCCCCeEEEcCCCCCCCCCCCCCCccc-----CCccccchhhHHHHhcCCCcCC
Confidence 8999999999999995 44 35865 48999999999533 4689997641 2212226789999999999984
Q ss_pred C-CcchhhhhcceeeecCC--CChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHhCCcceEEEe
Q 044555 98 T-DLNLWEDQWFAHGSDSP--LVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKC 174 (222)
Q Consensus 98 ~-~~~fw~hEW~KHGtC~~--~~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~~~~l~C 174 (222)
. +..||+|||+|||||+. ++|.+||++|++|++++|++++|+++||+|++ ++ |++++|++||++++|+. |.|+|
T Consensus 75 ~~~~~fW~hEw~KHGTC~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~~I~P~~-~~-~t~~~I~~ai~~~~g~~-p~l~C 151 (190)
T 1ucd_A 75 ANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNG-RT-KSRQAIKGFLKAKFGKF-PGLRC 151 (190)
T ss_dssp SCHHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHTCCHHHHHGGGTCSCSS-SE-EEHHHHHHHHHHHHSSC-CEEEE
T ss_pred CCCCchHHhccccCcEeCCCCCCHHHHHHHHHHHHHHcCHHHHHHHCCCCCCC-ce-EeHHHHHHHHHHHHCCC-eEEEe
Confidence 3 35699999999999996 79999999999999999999999999999974 77 99999999999999999 99999
Q ss_pred eeCCC-CC-eEEEEEEEEecCCCceecCCCCCcCCCCCCCCeEe
Q 044555 175 YSSKR-GH-LLSEVMLCADADARNFIDCNPEEFQQQNCGPDILF 216 (222)
Q Consensus 175 ~~~~~-~~-~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C~~~i~~ 216 (222)
.++++ +. +|.||+||||+++.++|+||. . +|+++++|
T Consensus 152 ~~~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~-~----~C~~~~~f 190 (190)
T 1ucd_A 152 RTDPQTKVSYLVQVVACFAQDGSTLIDCTR-D----TCGANFIF 190 (190)
T ss_dssp EECTTTCCEEEEEEEEEEETTSSSEECCCC-C----CCCSEEEC
T ss_pred ccCCCCCCcEEEEEEEEecCCCCeeccCCC-C----CCCCCCCC
Confidence 98754 34 999999999999766999996 2 69988876
No 6
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1
Probab=100.00 E-value=1.9e-55 Score=368.83 Aligned_cols=186 Identities=23% Similarity=0.404 Sum_probs=155.7
Q ss_pred CCCcceEEEEEEcccccccccCC------CCCC--C-CceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHH
Q 044555 20 RNNFDHFLLVQTWPHGYCERIPR------NCSI--R-NYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDM 88 (222)
Q Consensus 20 ~~~fd~~~l~~~W~p~~C~~~~~------~C~~--~-~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L 88 (222)
.|+||||+|||+|||+||+ ..+ +|.. + ..||||||||++. .+++||...+ ++.....++++.|
T Consensus 2 ~~~fDy~~l~l~Wpp~~C~-~~~~~c~~~~C~~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~-----~~~~~i~~l~~~L 75 (212)
T 1jy5_A 2 HKEFDYFTLALTWSGTECL-SVKDSCPTNACSRSEVETGFTIKGLWPDYDDGTWPSCCEGAK-----YDQNEISILSNDL 75 (212)
T ss_dssp CCCCCEEEEEEEEHHHHTC-C----CTTBGGGCTTSCSCEEEEEEEEECTTSCCCCSCSSCC-----CCGGGGGGGHHHH
T ss_pred CCCceEEEEEEEcCHHHhc-CCCCCCCCccccCCCCCCccEEeeeecccCCCCCCCCCCCCC-----CChhhhHHHHHHH
Confidence 5899999999999999994 443 3432 2 8999999999975 4689996431 2222226889999
Q ss_pred hccCCCCccCC------c--chhhhhcceeeecCCC---ChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHH
Q 044555 89 RYYWPGLTKTD------L--NLWEDQWFAHGSDSPL---VPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTY 157 (222)
Q Consensus 89 ~~~Wp~~~~~~------~--~fw~hEW~KHGtC~~~---~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i 157 (222)
+++||++...+ . .||+|||+|||||++. +|.+||++|++|++++|++++|+++||+|+..++ |++++|
T Consensus 76 ~~~WP~l~~~~~~~~~~~~~~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~l~~~~nl~~~L~~~gI~Ps~g~~-yt~~~I 154 (212)
T 1jy5_A 76 SKYWPSYSCPSSSACGSFDASDLAYEWAKHGTCSSPVLGNQYEYFSTTLMLYFKYNISEILSESGYLPSNTAE-YKVEGI 154 (212)
T ss_dssp HHHSCBCCSSCEEETTEEESSHHHHHHHHTGGGGTTTSCSHHHHHHHHHHHHHHSCHHHHHHTTTCCCCSSCC-EEHHHH
T ss_pred HhhCCcccccccccccccchhHHHHhhhhCceeCcccccCHHHHHHHHHHHHHhcCHHHHHHHcCCcCCCCce-EcHHHH
Confidence 99999997431 2 6999999999999995 9999999999999999999999999999974367 999999
Q ss_pred HHHHHHHhCCcceEEEeeeCCCCCeEEEEEEEEecCCCceecCCCCCcCCCCCCCCeEecCCCC
Q 044555 158 RQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADARNFIDCNPEEFQQQNCGPDILFSKGKT 221 (222)
Q Consensus 158 ~~ai~~~~g~~~~~l~C~~~~~~~~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C~~~i~~p~~~~ 221 (222)
++||++++|.. |.|+|.++ .|.||+|||+++.+ +|+||. ...+|++.|.||+++.
T Consensus 155 ~~Ai~~~~g~~-p~l~C~~~----~l~ev~lC~~~~~~-~i~C~~---~~~~C~~~i~~p~~~~ 209 (212)
T 1jy5_A 155 MSAIQSALRVT-PVVKCKSD----AVEQVQICFDKTLQ-LQECPS---TASTCPSLVSLPIKNT 209 (212)
T ss_dssp HHHHHHHHSSC-CEEEEETT----EEEEEEEEECTTSC-EECCCC---CCCCSCSEEBCCCCC-
T ss_pred HHHHHHhhCCC-EEEEeCCC----CcceEEEEEcCCCc-EecCCC---CCCCCCCCEEeCCCCC
Confidence 99999999999 99999764 89999999999976 999993 2346999999999874
No 7
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1
Probab=100.00 E-value=1.8e-55 Score=365.77 Aligned_cols=185 Identities=23% Similarity=0.424 Sum_probs=153.9
Q ss_pred cceEEEEEEcccccccccCCCCCCC--CceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHhccCCCCcc-
Q 044555 23 FDHFLLVQTWPHGYCERIPRNCSIR--NYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTK- 97 (222)
Q Consensus 23 fd~~~l~~~W~p~~C~~~~~~C~~~--~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~~~Wp~~~~- 97 (222)
||||+|||+|||+||+....+|..+ ..||||||||++. ++|++|...+. +. ..+++.++|+++||++..
T Consensus 1 fDy~~l~l~Wpp~~C~~~~~~C~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~-----~~-~~~~l~~~L~~~Wp~~~~~ 74 (200)
T 1iqq_A 1 YDYFQFTQQYQLAVCNSNRTLCKDPPDKLFTVHGLWPSNMVGPDPSKCPIKNI-----RK-REKLLEHQLEIIWPNVFDR 74 (200)
T ss_dssp CCEEEEEEEEHHHHTTSSSSCCSSCCCSSEEEEEEEEECSSSSCCCSCCCSCC-----CC-CCHHHHHHHHHHSCCSSCG
T ss_pred CeEEEEEEECChHHhcCCCCCCCCCCCCCeEEeecccccCCCCCCCCCCchhc-----Cc-cchhhhhhhhccCCCcccC
Confidence 8999999999999994333468764 7899999999987 36899986521 11 226889999999999963
Q ss_pred -CCcchhhhhcceeeecC---CCChHHHHHHHHHHH--HhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHh-CCcce
Q 044555 98 -TDLNLWEDQWFAHGSDS---PLVPLDYFQRTIQLR--KLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKIT-GHNNT 170 (222)
Q Consensus 98 -~~~~fw~hEW~KHGtC~---~~~~~~YF~~al~l~--~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~-g~~~~ 170 (222)
++..||+|||+|||||+ .++|.+||++|++|+ +|+|++++|+++||+|++ ++ |++++|++||++++ |.. |
T Consensus 75 ~~~~~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~l~~~~k~n~~~~L~~~~I~P~~-~~-~t~~~I~~Ai~~~~~g~~-p 151 (200)
T 1iqq_A 75 TKNNLFWDKEWMKHGSCGYPTIDNENHYFETVIKMYISKKQNVSRILSKAKIEPDG-KK-RALLDIENAIRNGADNKK-P 151 (200)
T ss_dssp GGHHHHHHHHHHHTGGGSTTTSCSHHHHHHHHHHHHTTTCCCHHHHHHHTTCCSSC-CE-ECHHHHHHHHHTTTTTCC-C
T ss_pred CCCChHHHhhhhCCcCcCCcccCCHHHHHHHHHHHHhhcccCHHHHHHHcCCccCC-Ce-ecHHHHHHHHHHhcCCCc-e
Confidence 34569999999999999 589999999999999 779999999999999987 67 99999999999999 888 9
Q ss_pred EEEeeeCCCCCeEEEEEEEEecCCCceecCCCCCc--CCCCCCC-CeEe
Q 044555 171 ILKCYSSKRGHLLSEVMLCADADARNFIDCNPEEF--QQQNCGP-DILF 216 (222)
Q Consensus 171 ~l~C~~~~~~~~L~EI~iC~~~~~~~~i~Cp~~~~--~~~~C~~-~i~~ 216 (222)
.|+|..++++.+|.||+|||+++++++|+||.... ...+||. +|.|
T Consensus 152 ~l~C~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~~~~~~~~Cp~~~i~y 200 (200)
T 1iqq_A 152 KLKCQKKGTTTELVEITLCSDKSGEHFIDCPHPFEPISPHYCPTNNIKY 200 (200)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTSSSEECCSCCCCTTSTTCCCSSCEEC
T ss_pred EEEEeeCCCCeEEEEEEEEEECCCCeEEeCCCCCCCCCCCCCCccCcCC
Confidence 99998753333999999999999977999997421 1346995 6865
No 8
>3t0o_A Ribonuclease T2, ribonuclease 6; rnaset2, alpha/beta fold, RNA cleavage, hydrol; HET: NAG; 1.59A {Homo sapiens}
Probab=100.00 E-value=8.8e-54 Score=363.04 Aligned_cols=194 Identities=22% Similarity=0.577 Sum_probs=152.3
Q ss_pred cCCCCcceEEEEEEcccccccccCCCCCCC-CceEEeeeeecCCCCCCCCCcccccccccccccCCCchHHHhccCCCCc
Q 044555 18 IARNNFDHFLLVQTWPHGYCERIPRNCSIR-NYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLT 96 (222)
Q Consensus 18 ~~~~~fd~~~l~~~W~p~~C~~~~~~C~~~-~~ftIHGLWP~~~~~~~~c~~~~~~~~~~~~~~~~~l~~~L~~~Wp~~~ 96 (222)
..+++||||+|||+|||+||+.....|..| +.||||||||++. ++|+.... ++....++++++|+++||++.
T Consensus 5 ~~~~~fD~~~lv~qWppt~C~~~~~~C~~p~~~FTIHGLWP~~~---~~C~~s~~----f~~~~i~~l~~~L~~~WPdl~ 77 (238)
T 3t0o_A 5 RDNHEWKKLIMVQHWPETVCEKIQNDCRDPPDYWTIHGLWPDKS---EGCNRSWP----FNLEEIKDLLPEMRAYWPDVI 77 (238)
T ss_dssp -----CCEEEEEEECHHHHCCSSSGGGTSCCSSCEEEEEEESSC---CCCCTTSC----CCGGGGGGGHHHHHHHSCCCS
T ss_pred cCCCCCcEEEEEEECCCccccCCCCCCCCCccccEEcccccccc---CCCCCCcc----cchhhhhHHHHHHHhhCcccc
Confidence 457899999999999999995334568776 8999999999986 57764311 111112689999999999997
Q ss_pred c---CCcchhhhhcceeeecCCC-----ChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHhCCc
Q 044555 97 K---TDLNLWEDQWFAHGSDSPL-----VPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHN 168 (222)
Q Consensus 97 ~---~~~~fw~hEW~KHGtC~~~-----~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~ 168 (222)
. .+..||+|||+|||||++. +|.+||++|++|++++|++++|+++||+|++ .+ |++++|++||++++|+.
T Consensus 78 ~~~~~~~~fW~hEW~KHGTC~~~~~~~~~q~~YF~~a~~L~~~~n~~~~L~~~gI~P~~-~~-yt~~~I~~Ai~~~~g~~ 155 (238)
T 3t0o_A 78 HSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSI-NY-YQVADFKDALARVYGVI 155 (238)
T ss_dssp SCCSSTHHHHHHHCCCCCHHHTTSGGGCSHHHHHHHHHHHHHHHCHHHHHHHTTCCCCS-SC-EEHHHHHHHHHHHHSSC
T ss_pred cCCCCchHHHHHhhhcCceecCCccccccHHHHHHHHHHHHHHcccHHHHHhcCccCCC-Cc-ccHHHHHHHHHHHHCCC
Confidence 3 3467999999999999985 8999999999999999999999999999987 56 99999999999999999
Q ss_pred ceEEEeeeCCCC---CeEEEEEEEEecCCCceecCCCCCc------------------CCCCCCCC-eEecCCCC
Q 044555 169 NTILKCYSSKRG---HLLSEVMLCADADARNFIDCNPEEF------------------QQQNCGPD-ILFSKGKT 221 (222)
Q Consensus 169 ~~~l~C~~~~~~---~~L~EI~iC~~~~~~~~i~Cp~~~~------------------~~~~C~~~-i~~p~~~~ 221 (222)
|.|+|.+++++ .+|.||+||||+++.++||||.+.. +-..|.+. ++|||.++
T Consensus 156 -P~l~C~~~~~~~~~~~L~EV~iC~d~~~~~~idCp~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 229 (238)
T 3t0o_A 156 -PKIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCEDGPVFYPPPKK 229 (238)
T ss_dssp -CEEEEECCC---CCCEEEEEEEEEETTTCCEECCC--------------------CTTCEECCSSEEBCCCCC-
T ss_pred -eEEEEecCCCCCcccEEEEEEEEeecCCCEEecCCCCCCCCccccccccccccccCCceeecCCCCccCCCCcc
Confidence 99999876543 2799999999997777999997531 00238744 88888764
No 9
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1
Probab=100.00 E-value=1.8e-50 Score=340.85 Aligned_cols=179 Identities=24% Similarity=0.484 Sum_probs=148.1
Q ss_pred CcceEEEEEEcccccccccCCCCCCCCceEEeeeeecCC--CCC--CCCCccccccccccc--ccCCCchHHHhccCCCC
Q 044555 22 NFDHFLLVQTWPHGYCERIPRNCSIRNYFVIHGLWPVTA--KGK--AFLSRKRKRVNVSDT--IGRGNLFTDMRYYWPGL 95 (222)
Q Consensus 22 ~fd~~~l~~~W~p~~C~~~~~~C~~~~~ftIHGLWP~~~--~~~--~~c~~~~~~~~~~~~--~~~~~l~~~L~~~Wp~~ 95 (222)
.||||+|+|+|+|++. ..+.||||||||++. +++ +||+......++.+. ....+++++|+++||++
T Consensus 23 ~fd~~~l~q~W~p~~~--------p~~~fTIHGLWP~~~~g~~pp~~~C~~s~~~~~~~~~l~~~~~~l~~~L~~~WP~l 94 (222)
T 1bol_A 23 EYGLVVLNMQWAPGYG--------PDNAFTLHGLWPDKCSGAYAPSGGCDSNRASSSIASVIKSKDSSLYNSMLTYWPSN 94 (222)
T ss_dssp SSCEEEEEEECCTTSS--------CTTCCEEEEEEEECTTSCBCCTTCSCSTTCCSCHHHHHHHHCHHHHHHHHHHSCCT
T ss_pred CCCeEEEEEecCCCCC--------CCcceEEcceeecCcCCCCCccCCCCCcccccchhhhhhccchHHHHHHhhcCCCc
Confidence 3999999999999983 138999999999987 357 899865221111000 00257789999999999
Q ss_pred ccCCcchhhhhcceeeecCC-------------CChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHH
Q 044555 96 TKTDLNLWEDQWFAHGSDSP-------------LVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIM 162 (222)
Q Consensus 96 ~~~~~~fw~hEW~KHGtC~~-------------~~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~ 162 (222)
...+..||+|||+|||||++ .++.+||++|++|++++|+.++|+++||+|+ .+ |++++|++||+
T Consensus 95 ~~~~~~fW~hEW~KHGTC~~~~~~~c~~~y~~~~~~~~YF~~al~L~~~~n~~~~L~~~gI~P~--~~-yt~~~I~~Ai~ 171 (222)
T 1bol_A 95 QGNNNVFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPG--GT-YTATEMQSAIE 171 (222)
T ss_dssp TSCHHHHHHHHHHHTGGGCGGGSGGGCTTCCTTHHHHHHHHHHHHHHHHSCHHHHHHTTTCCSS--EE-EEHHHHHHHHH
T ss_pred cccccHHHHhhhhcCeeeccccCccccccccccccHHHHHHHHHHHHHHcCcHHHHHHcCCCCC--Cc-CcHHHHHHHHH
Confidence 86667799999999999986 2688999999999999999999999999995 46 99999999999
Q ss_pred HHhCCcceEEEeeeCCCCCeEEEEEEEEecCC-CceecCCCCCcCCCCCCCCeEecC
Q 044555 163 KITGHNNTILKCYSSKRGHLLSEVMLCADADA-RNFIDCNPEEFQQQNCGPDILFSK 218 (222)
Q Consensus 163 ~~~g~~~~~l~C~~~~~~~~L~EI~iC~~~~~-~~~i~Cp~~~~~~~~C~~~i~~p~ 218 (222)
+++|.. |.|+|.+ .+|.||+|||++++ ..+++|+... ..+|+..|.||+
T Consensus 172 ~~~g~~-p~l~C~~----~~L~Ev~ic~~~~g~~~~~~~~~~~--~~~C~~~i~~pp 221 (222)
T 1bol_A 172 SYFGAK-AKIDCSS----GTLSDVALYFYVRGRDTYVITDALS--TGSCSGDVEYPT 221 (222)
T ss_dssp HHHSSC-CEEEEET----TEEEEEEEEEEEETTTEEEEECCSC--CCSCCSEEEECC
T ss_pred HHhCCC-eEEEECC----CEEeEEEEEEEcCCCCCeEECCCCC--CCCCCCCeEeCC
Confidence 999999 9999973 29999999999995 4599999753 337998899987
No 10
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A*
Probab=100.00 E-value=1e-48 Score=334.52 Aligned_cols=190 Identities=22% Similarity=0.386 Sum_probs=146.0
Q ss_pred cCCCCcceEEEEEEcccccccccC-------CCCCCC-------CceEEeeeeecCCC-----------C-CCCCCcccc
Q 044555 18 IARNNFDHFLLVQTWPHGYCERIP-------RNCSIR-------NYFVIHGLWPVTAK-----------G-KAFLSRKRK 71 (222)
Q Consensus 18 ~~~~~fd~~~l~~~W~p~~C~~~~-------~~C~~~-------~~ftIHGLWP~~~~-----------~-~~~c~~~~~ 71 (222)
.++++||||+|||+|||+||.... .+|..| ..||||||||++.. + +.+|...+.
T Consensus 6 ~~~~~fDy~~LalsWppsfC~~~~~~~~~~~~~C~~p~~~~~~~~~ftIHGLWP~~~~~~~~~g~~~~~~~~~~C~~~~~ 85 (245)
T 2pqx_A 6 KQYGDFDRYVLALSWQTGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPI 85 (245)
T ss_dssp SSSCCCCEEEEEEEEHHHHHHHHHHTTCCCCHHHHSCCCCSSGGGGEEEEEEEECCCHHHHTTTCCHHHHHHHGGGCTTT
T ss_pred CCCCCcceEEEEEecCHHHhCCCccccCCCccccCCcccCCCCCCceEEEecCCCCCCCccccccccccccccCcccCcc
Confidence 578999999999999999995322 248642 33999999999741 1 234543210
Q ss_pred -cc---------cccccccCCCchHHHhccCCCCccCCcchhhhhcceeeecCCCChHHHHHHHHHHHHhcCHH---HHH
Q 044555 72 -RV---------NVSDTIGRGNLFTDMRYYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLV---KAL 138 (222)
Q Consensus 72 -~~---------~~~~~~~~~~l~~~L~~~Wp~~~~~~~~fw~hEW~KHGtC~~~~~~~YF~~al~l~~~~n~~---~~L 138 (222)
.. +........++.++|+++||++... ..||+|||+|||||++++|.+||++|++|++++|++ ++|
T Consensus 86 ~~~~~~~~~~~C~~~~~~l~~~l~~~L~~~WP~~~~~-~~fw~hEW~KHGTC~~~~~~~YF~~a~~l~~~~n~~~~~~~l 164 (245)
T 2pqx_A 86 PNLPEARASRMCSSPETGLSLETAAKLSEVMPGAGGR-SCLERYEYAKHGACFGFDPDAYFGTMVRLNQEIKESEAGKFL 164 (245)
T ss_dssp TCCCCCCGGGGGGSCCCCCCHHHHHHHHHHCTTSSTT-TCHHHHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred cccccccccccccCccccCCHHHHHHHHHhCCCCCCc-chHHHHHhhhCCeecCCCHHHHHHHHHHHHHHhccchHHHHh
Confidence 00 0000011256789999999999754 569999999999999999999999999999999764 567
Q ss_pred hhCCCCCCCCCccccHHHHHHHHHHHhCCcc---eEEEeeeCCCCCeEEEEEEEEecC-------CCceecCCCCCcCCC
Q 044555 139 GDVGIVPRYKGFTHHKSTYRQGIMKITGHNN---TILKCYSSKRGHLLSEVMLCADAD-------ARNFIDCNPEEFQQQ 208 (222)
Q Consensus 139 ~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~~---~~l~C~~~~~~~~L~EI~iC~~~~-------~~~~i~Cp~~~~~~~ 208 (222)
+. .| + ++ |++++|++||++++|... |.|+|.++ ..+|.||+|||+++ +..+|+||. . .
T Consensus 165 ~~---~~-g-~~-~t~~~I~~Ai~~~~g~~p~~~v~l~C~~~--~~~L~Ev~iC~~~~~~~~~~~~~~~i~cp~---~-~ 232 (245)
T 2pqx_A 165 AD---NY-G-KT-VSRRDFDAAFAKSWGKENVKAVKLTCQGN--PAYLTEIQISIKADAINAPLSANSFLPQPH---P-G 232 (245)
T ss_dssp HH---TT-T-SE-EEHHHHHHHHHHHHCGGGGGGEEEEEETT--TTEEEEEEEEEEGGGTTSCCCTTSBCCCSC---C-B
T ss_pred hc---CC-C-ce-EcHHHHHHHHHHHhCCCCCcceEEEECCC--CCEEEEEEEEEcccccCCCccccccccCCC---C-C
Confidence 77 24 5 67 999999999999999871 49999753 24999999999999 556999995 2 3
Q ss_pred CCCCCeEecCCC
Q 044555 209 NCGPDILFSKGK 220 (222)
Q Consensus 209 ~C~~~i~~p~~~ 220 (222)
+|++.|+||++.
T Consensus 233 ~C~~~~~~~~~g 244 (245)
T 2pqx_A 233 NCGKTFVIDKAG 244 (245)
T ss_dssp SCCSEEECCCSC
T ss_pred CCCCCeEeCCCC
Confidence 799999999863
No 11
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger}
Probab=100.00 E-value=6.2e-47 Score=323.75 Aligned_cols=185 Identities=24% Similarity=0.442 Sum_probs=151.5
Q ss_pred CcceEEEEEEcccccccccCCCCCCC-CceEEeeeeecCC--CCCCCCCcccccccc---cccccCCCchHHHhccCCCC
Q 044555 22 NFDHFLLVQTWPHGYCERIPRNCSIR-NYFVIHGLWPVTA--KGKAFLSRKRKRVNV---SDTIGRGNLFTDMRYYWPGL 95 (222)
Q Consensus 22 ~fd~~~l~~~W~p~~C~~~~~~C~~~-~~ftIHGLWP~~~--~~~~~c~~~~~~~~~---~~~~~~~~l~~~L~~~Wp~~ 95 (222)
.-+.++++|.|+..-| ..| +.||||||||++. ++++||+..+...++ .......+|++.|+++||++
T Consensus 26 p~g~l~~tq~W~~~p~-------~~p~~~fTIHGLWP~~~~g~~p~~C~~s~~~~~i~~~l~~~~~~~ll~~L~~~Wp~l 98 (247)
T 3d3z_A 26 PGGSLLQTQFWDYDPS-------DGPSDSWTIHGLWPDNCDGTYQEYCDESREYSNITSILEAQNRTELLSYMKEYWPDY 98 (247)
T ss_dssp SCCEEEEEEECCBTTB-------CSCTTCCEEEEEEEECTTSCBCCCCCGGGCCSCHHHHHHHTTCHHHHHHHHHHSCCT
T ss_pred CCCEEEEEeecCCCCC-------CCCccccEEeeeeccCCCCCCCCCCCCcccccchhhhhhhcchHHHHHHHHhhCccc
Confidence 3499999999998655 334 8999999999986 368999865321111 11122357888999999999
Q ss_pred cc--CCcchhhhhcceeeecCC-------------CChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHH
Q 044555 96 TK--TDLNLWEDQWFAHGSDSP-------------LVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQG 160 (222)
Q Consensus 96 ~~--~~~~fw~hEW~KHGtC~~-------------~~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~a 160 (222)
.. .+..||+|||+|||||++ .++.+||++|++|++++|+.++|+++||+|+.+++ |++++|++|
T Consensus 99 ~~~~~~~~fW~hEW~KHGTC~~~~~~~C~~~y~~~~~~~~YF~~al~L~~k~n~~~~L~~~gI~P~~~~t-yt~~~I~~A 177 (247)
T 3d3z_A 99 EGADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGITPSEDAT-YKLSDIEDA 177 (247)
T ss_dssp TCGGGHHHHHHHHHHHTGGGCGGGSGGGBSSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCCSSCC-BCHHHHHHH
T ss_pred cCCCCccHHHHHhhhcCeeecccCCcccccccccccCHHHHHHHHHHHHHhcCcHHHHHHCCccCCCCce-ECHHHHHHH
Confidence 86 456799999999999987 35789999999999999999999999999976567 999999999
Q ss_pred HHHHh-CCcceEEEeeeCCCCCeEEEEEEEEecCCC----ceecCCCCCcCCCCCCCC-eEecCCCC
Q 044555 161 IMKIT-GHNNTILKCYSSKRGHLLSEVMLCADADAR----NFIDCNPEEFQQQNCGPD-ILFSKGKT 221 (222)
Q Consensus 161 i~~~~-g~~~~~l~C~~~~~~~~L~EI~iC~~~~~~----~~i~Cp~~~~~~~~C~~~-i~~p~~~~ 221 (222)
|++++ |.. |.|+|.+ .+|.||+|||++++. .+++|+... ..+|+.. |.||+++.
T Consensus 178 i~~~~~g~~-p~l~C~~----~~L~Ev~iC~~~~~~~~~~~~~~~~~~~--~~~C~~~~I~~pp~~~ 237 (247)
T 3d3z_A 178 LAAIHDGYP-PYVGCED----GALSQLYYYFNVKGSAIGGTYVASERLE--DSNCKDSGIKYPPKYS 237 (247)
T ss_dssp HHTTTTTCC-CEEEEET----TEEEEEEEEEEEESCTTTSEEEECCCSS--CBSSCSSCBBCCCTTC
T ss_pred HHHhcCCCC-eEEEeCC----CEEEEEEEEEecCCCccCCceeECCCCC--CCCCCCCceEeCCCCC
Confidence 99999 888 9999973 399999999999983 488998753 3479975 99999763
No 12
>4dvk_A E(RNS) glycoprotein; T2 ribonuclease, virus envelope glycoprotein, viral protein; HET: NAG BMA MAN; 2.21A {Bovine viral diarrhea virus} PDB: 4dw5_A* 4dvl_A* 4dvn_A* 4dw3_A* 4dw4_A* 4dwc_A* 4dwa_A* 4dw7_A*
Probab=99.84 E-value=1.4e-22 Score=160.48 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=56.4
Q ss_pred CceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHhccCCCCccCCcchhhhhcceeeecCCCChHHHHHHH
Q 044555 48 NYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRT 125 (222)
Q Consensus 48 ~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~~~Wp~~~~~~~~fw~hEW~KHGtC~~~~~~~YF~~a 125 (222)
..||||||||++. +.|.+|. .+. +.....++.+.|++ |++..++ ||+|||+|||||+.++|.+||+.+
T Consensus 25 ~~FTIHGLWPdN~~gt~PsnC~-~~f-----d~~~I~dLl~~Ldk--PdL~~~~--FWeHEWnKHGTCS~ynQe~YFdL~ 94 (165)
T 4dvk_A 25 VNRSLHGIWPEKICTGVPSHLA-TDT-----ELKAIHGMMDASEK--TNYTCCR--LQRHEWNKHGWCNWYNIEPWILLM 94 (165)
T ss_dssp CCEEEEEEECSCCCCSCCSSCC-CHH-----HHHTSTTCCCSCGG--GTSCSSH--HHHHHHHHHTHHHHSSHHHHHHHH
T ss_pred CceEEEeeeCCCCCCCCccccC-ccc-----chhhHHHHHHhhcC--CCCCchH--HHHHHHHcCCccCCCCHHHHHHHH
Confidence 8999999999985 5688997 311 11112577788888 9997653 999999999999999999999887
Q ss_pred HHH
Q 044555 126 IQL 128 (222)
Q Consensus 126 l~l 128 (222)
-..
T Consensus 95 ~~a 97 (165)
T 4dvk_A 95 NKT 97 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 13
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=38.12 E-value=26 Score=30.00 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=29.4
Q ss_pred CHHHHHhhCCCCCCCCCccccHHHHHHHHHHHhCCc
Q 044555 133 DLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHN 168 (222)
Q Consensus 133 n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~ 168 (222)
...++|++.|+.|.+-+. ++..++..|+++++|..
T Consensus 31 PgLNaLANHGyLpR~G~n-it~~~l~~al~~~~n~~ 65 (299)
T 2ciw_A 31 PALNALANHGYIPHDGRA-ISRETLQNAFLNHMGIA 65 (299)
T ss_dssp HHHHHHHHTTSSCTTCEE-ECHHHHHHHHHHHHCBC
T ss_pred HHHHHHHhcCCcCCCCCc-cCHHHHHHHHHHhcCCC
Confidence 466889999999985344 89999999999999865
No 14
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=32.13 E-value=11 Score=19.44 Aligned_cols=8 Identities=25% Similarity=0.929 Sum_probs=6.9
Q ss_pred EEcccccc
Q 044555 30 QTWPHGYC 37 (222)
Q Consensus 30 ~~W~p~~C 37 (222)
.+|||+|+
T Consensus 4 ~sWpPef~ 11 (22)
T 3ktp_B 4 INWPPEFH 11 (26)
T ss_pred ccCCcccc
Confidence 57999998
No 15
>1dqi_A SOR, superoxide reductase; non-heme iron protein, immunoglobulin-like (IG) beta barrel fold, oxidoreductase; 1.70A {Pyrococcus furiosus} SCOP: b.1.13.1 PDB: 1do6_A 1dqk_A 2hvb_A
Probab=31.55 E-value=6.9 Score=29.18 Aligned_cols=9 Identities=56% Similarity=1.077 Sum_probs=6.7
Q ss_pred eEEeeeeec
Q 044555 50 FVIHGLWPV 58 (222)
Q Consensus 50 ftIHGLWP~ 58 (222)
=+|||||=+
T Consensus 111 CNlHGLW~~ 119 (124)
T 1dqi_A 111 CNIHGLWEN 119 (124)
T ss_dssp ETTTEEEEE
T ss_pred ecccCCEEe
Confidence 348999964
No 16
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=29.68 E-value=7.8 Score=28.91 Aligned_cols=8 Identities=38% Similarity=1.095 Sum_probs=6.1
Q ss_pred EEeeeeec
Q 044555 51 VIHGLWPV 58 (222)
Q Consensus 51 tIHGLWP~ 58 (222)
++||||=+
T Consensus 120 NlHGLW~~ 127 (128)
T 1y07_A 120 NLHGVWSG 127 (128)
T ss_dssp TTTEEEEE
T ss_pred cCcCcEEc
Confidence 48999953
No 17
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=29.59 E-value=7.8 Score=28.80 Aligned_cols=10 Identities=50% Similarity=1.105 Sum_probs=7.0
Q ss_pred ceEEeeeeec
Q 044555 49 YFVIHGLWPV 58 (222)
Q Consensus 49 ~ftIHGLWP~ 58 (222)
.=++||||=+
T Consensus 115 YCNlHGLW~~ 124 (126)
T 1vzi_A 115 YCNIHGHWKA 124 (126)
T ss_dssp EETTTEEEEE
T ss_pred EEcccceEEe
Confidence 3458999953
Done!