BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044557
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 169/377 (44%), Gaps = 69/377 (18%)
Query: 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG 67
L TL GH+S V +A + G+ + + S D V+ W+ N +L Q +++
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSS----- 222
Query: 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQ-----------------EPDHQKYTRL 108
+V+ + D + SA D +++W N Q PD Q
Sbjct: 223 --SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQ----- 275
Query: 109 ATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168
T+ + D L +N ++ T H +V +A + D + S S D+T+K+
Sbjct: 276 -TIASASDDKTVKLWNRNGQLLQ-----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329
Query: 169 WRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLE 227
W + + L+++T H ++ VA S DG + + S DK +K+W N+ L+ L
Sbjct: 330 WN-RNGQHLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLT 382
Query: 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287
H+S + +A S DG + S + D+++ +W + +G +L L GH+ S+ +A D
Sbjct: 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---NGQLLQT--LTGHSSSVWGVAFSPD 437
Query: 288 --LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345
+ S S DKT+++W +RN L L GH V+ +A + D + S
Sbjct: 438 DQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPDG---------QTIASA 485
Query: 346 SLDCDIKVWQISFPLVR 362
S D +K+W + L++
Sbjct: 486 SDDKTVKLWNRNGQLLQ 502
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 168/377 (44%), Gaps = 69/377 (18%)
Query: 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG 67
L TL GH+S V +A + G+ + + S D V+ W+ N +L Q +++
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSS----- 99
Query: 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQ-----------------EPDHQKYTRL 108
+V+ + D + SA D +++W N Q PD Q
Sbjct: 100 --SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ----- 152
Query: 109 ATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168
T+ + D L +N ++ T H +V +A + D + S S D+T+K+
Sbjct: 153 -TIASASDDKTVKLWNRNGQLLQ-----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Query: 169 WRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLE 227
W + + L+++T H ++ VA S DG + + S DK +K+W N+ L+ L
Sbjct: 207 WN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLT 259
Query: 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287
H+S +N +A DG + S + D+++ +W + +G +L L GH+ S+ +A D
Sbjct: 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNR---NGQLLQT--LTGHSSSVWGVAFSPD 314
Query: 288 --LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345
+ S S DKT+++W +RN L L GH V +A + D + S
Sbjct: 315 GQTIASASDDKTVKLW---NRNGQHLQTLTGHSSSVWGVAFSPDG---------QTIASA 362
Query: 346 SLDCDIKVWQISFPLVR 362
S D +K+W + L++
Sbjct: 363 SDDKTVKLWNRNGQLLQ 379
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 163/369 (44%), Gaps = 69/369 (18%)
Query: 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG 67
L TL GH+S V+ +A G+ + + S D V+ W+ N +L Q +++
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSS----- 304
Query: 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQ-----------------EPDHQKYTRL 108
+V + D + SA D +++W N Q PD Q
Sbjct: 305 --SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQ----- 357
Query: 109 ATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168
T+ + D L +N ++ T H +V +A + D + S S D+T+K+
Sbjct: 358 -TIASASDDKTVKLWNRNGQLLQ-----TLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Query: 169 WRTSDFKCLESITNAHDDAINAVALS-DDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE 227
W + + L+++T H ++ VA S DD + + S DK +K+W N+ L+ L
Sbjct: 412 WN-RNGQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTVKLW-----NRNGQLLQTLT 464
Query: 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287
H+S + +A S DG + S + D+++ +W + +G +L L GH+ S+ +A D
Sbjct: 465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---NGQLLQT--LTGHSSSVRGVAFSPD 519
Query: 288 --LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345
+ S S DKT+++W +RN L L GH V +A + D + S
Sbjct: 520 GQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDG---------QTIASA 567
Query: 346 SLDCDIKVW 354
S D +K+W
Sbjct: 568 SSDKTVKLW 576
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 112/225 (49%), Gaps = 27/225 (12%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V 199
H +V +A + D + S S D+T+K+W + + L+++T H ++ VA S DG +
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWGVAFSPDGQTI 72
Query: 200 YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259
+ S DK +K+W N+ L+ L H+S + +A S DG + S + D+++ +W +
Sbjct: 73 ASASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 260 EEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317
+G +L L GH+ S+ +A D + S S DKT+++W +RN L L GH
Sbjct: 128 ---NGQLLQT--LTGHSSSVWGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGH 179
Query: 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLVR 362
V +A + D + S S D +K+W + L++
Sbjct: 180 SSSVWGVAFSPDG---------QTIASASDDKTVKLWNRNGQLLQ 215
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 25/183 (13%)
Query: 183 AHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241
AH ++ VA S DG + + S DK +K+W N+ L+ L H+S + +A S D
Sbjct: 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIR 299
G + S + D+++ +W + +G +L L GH+ S+ +A D + S S DKT++
Sbjct: 69 GQTIASASDDKTVKLWNR---NGQLLQT--LTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359
+W +RN L L GH V +A + D + S S D +K+W +
Sbjct: 124 LW---NRNGQLLQTLTGHSSSVWGVAFSPDG---------QTIASASDDKTVKLWNRNGQ 171
Query: 360 LVR 362
L++
Sbjct: 172 LLQ 174
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 19/139 (13%)
Query: 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285
LE H+S + +A S DG + S + D+++ +W + +G +L L GH+ S+ +A
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---NGQLLQT--LTGHSSSVWGVAFS 66
Query: 286 SD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343
D + S S DKT+++W +RN L L GH V+ +A + D +
Sbjct: 67 PDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPDG---------QTIA 114
Query: 344 SGSLDCDIKVWQISFPLVR 362
S S D +K+W + L++
Sbjct: 115 SASDDKTVKLWNRNGQLLQ 133
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 16/211 (7%)
Query: 154 ETLLYSVSWDRTIKIW--RTSDFKCLESI-TNAHDDAINAVALSDDGDVYT-GSADKKIK 209
+ +L + S DR IK+ + DF ++ + AH AI +VA + GS D +
Sbjct: 24 QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83
Query: 210 VWRRSPGNKKHSLVDVL---ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI 266
+W + + +D+L E H + + +A S DG L + + D+S+ +WE +E
Sbjct: 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143
Query: 267 LVVGALRGHTKSI--LCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324
+ L+ H++ + + L+ S S D T+RIW+ D ++ C+AVL GH G V
Sbjct: 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVW-- 201
Query: 325 AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355
+ D ++ + +CSGS D ++VW+
Sbjct: 202 -----SSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 29/196 (14%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIW-------RTSDFKCLESITNAHDDAINAVAL 193
H A+ ++A +LL + S+D T+ IW RT + L +I H++ + VA
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAW 115
Query: 194 SDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR 252
S+DG + T S DK + +W +++ + VL+ H+ + + ++L S + D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 253 SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDL--------VCSGSADKTIRIWRGI 304
++ +W+ +DD + V L GH ++ SD +CSGS D T+R+W+ +
Sbjct: 176 TVRIWKDYDDDWECVAV--LNGHEGTVWS----SDFDKTEGVFRLCSGSDDSTVRVWKYM 229
Query: 305 ------DRNYTCLAVL 314
+ + C A+L
Sbjct: 230 GDDEDDQQEWVCEAIL 245
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 22/123 (17%)
Query: 8 DHHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVA 65
++ C++ L+ H+ V + + L + S D+ VR W +++ + VA
Sbjct: 142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW----------KDYDDDWECVA 191
Query: 66 VGKGAVKSLVVLAD--------KLFSAHQDHKIRVWK-INNQEPDHQKYTRLATLPTLGD 116
V G + V +D +L S D +RVWK + + E D Q++ A LP +
Sbjct: 192 VLNGH-EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250
Query: 117 RAI 119
R +
Sbjct: 251 RQV 253
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 106/212 (50%), Gaps = 24/212 (11%)
Query: 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSAD 205
S L L DE ++ + S D T+++W + + L ++ + H +A+ + ++G + T S D
Sbjct: 175 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRF-NNGMMVTCSKD 232
Query: 206 KKIKVW-RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG 264
+ I VW SP + +L VL H + +N + D + S + DR+I VW +
Sbjct: 233 RSIAVWDMASPTDI--TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE- 287
Query: 265 NILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324
V L GH + I C+ LV SGS+D TIR+W I+ CL VLEGH V+C+
Sbjct: 288 ---FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW-DIECG-ACLRVLEGHEELVRCI 342
Query: 325 AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
DN R + SG+ D IKVW +
Sbjct: 343 --RFDNKR---------IVSGAYDGKIKVWDL 363
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 122/304 (40%), Gaps = 65/304 (21%)
Query: 1 QHNLSVVDHHCLT-TLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLS 59
+H+L + HC + T KG V L + + +G DN ++ WD NT L
Sbjct: 120 RHSLQRI--HCRSETSKG----VYCLQYDDQKIVSGLRDNTIKIWDKNT---------LE 164
Query: 60 NNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAI 119
I+ G+V L + + D +RVW +N E L TL
Sbjct: 165 CKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE----------MLNTL----- 209
Query: 120 KLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK--CL 177
+HH +AV L L + ++ + S DR+I +W + L
Sbjct: 210 -------------------IHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 248
Query: 178 ESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237
+ H A+N V DD + + S D+ IKVW S V L H GI L
Sbjct: 249 RRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCE----FVRTLNGHKRGIACLQ 303
Query: 238 LSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKT 297
++ SG+ D +I +W+ E G L V L GH + + C+ + + SG+ D
Sbjct: 304 YR--DRLVVSGSSDNTIRLWDIE--CGACLRV--LEGHEELVRCIRFDNKRIVSGAYDGK 357
Query: 298 IRIW 301
I++W
Sbjct: 358 IKVW 361
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 115/297 (38%), Gaps = 55/297 (18%)
Query: 10 HCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG 69
C L GH V L + + TGSSD+ VR WD NT E L N +
Sbjct: 164 ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT------GEML---NTLIHHCE 214
Query: 70 AVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQ 129
AV L + + +D I VW + + PT +
Sbjct: 215 AVLHLRFNNGMMVTCSKDRSIAVWDMAS--------------PT-------------DIT 247
Query: 130 IRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN 189
+RR V H AV+ + D+ + S S DRTIK+W TS + + ++ N H I
Sbjct: 248 LRR----VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIA 300
Query: 190 AVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249
+ D V +GS+D I++W G + + VLE H + + D + SGA
Sbjct: 301 CLQYRDRL-VVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRF--DNKRIVSGA 353
Query: 250 CDRSIIVWE-----KEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW 301
D I VW+ L + L H+ + + + S S D TI IW
Sbjct: 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 410
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 17/217 (7%)
Query: 148 LALTKDETLLYSVSWDRTIKIWRTS--DFKCLESITNAHDDAINAVALSDDGD-VYTGSA 204
LA TLL S DR I+IW T + C ++ H + VA S G+ + + S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 205 DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG 264
D +W+++ V LE H + + ++A + G++L + + D+S+ VWE +E+D
Sbjct: 82 DATTCIWKKN--QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED- 138
Query: 265 NILVVGALRGHTKSI--LCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVK 322
V L HT+ + + +L+ S S D T++++R + ++ C A LEGH V
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198
Query: 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359
LA R + S S D +++W+ P
Sbjct: 199 SLAFDPSGQR---------LASCSDDRTVRIWRQYLP 226
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 108/287 (37%), Gaps = 72/287 (25%)
Query: 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVA 65
D C+TTL+GH + V S+A A G L T S D V W E+D+E V+
Sbjct: 94 DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW-------EVDEE--DEYECVS 144
Query: 66 VGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
V L S QD K VW H LA+
Sbjct: 145 V--------------LNSHTQDVKHVVW--------HPSQELLASASY-----------D 171
Query: 126 NHVQIRRHKTCTWV------HHVDAVSALALTKDETLLYSVSWDRTIKIWRT-------- 171
+ V++ R + WV H V +LA L S S DRT++IWR
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231
Query: 172 -------SDFKCLESITNAHDDAINAVALSD-DGDVYTGSADKKIKVWRRSPGNKKHSLV 223
+KC+ +++ H I +A G + T D I+V++ P +
Sbjct: 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT 291
Query: 224 DVL-----ERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDG 264
L + H+ +N +A + + +L S + D + W+ + +G
Sbjct: 292 FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLER 228
WR + K + HDD + + +GS D +KVW G +LV
Sbjct: 103 WRRGELKS-PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG---- 157
Query: 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDL 288
H G+ + + +++ SG+ DR++ VW E + + L GHT ++ CM +
Sbjct: 158 HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE----CIHTLYGHTSTVRCMHLHEKR 211
Query: 289 VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD 348
V SGS D T+R+W CL VL GH V+C+ D R V SG+ D
Sbjct: 212 VVSGSRDATLRVWD--IETGQCLHVLMGHVAAVRCV--QYDGRR---------VVSGAYD 258
Query: 349 CDIKVW 354
+KVW
Sbjct: 259 FMVKVW 264
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 25/195 (12%)
Query: 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL 222
D T+K+W KCL ++ H + + + D+ + +GS D+ +KVW G H+L
Sbjct: 138 DNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECIHTL 195
Query: 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM 282
H S + + L V SG+ D ++ VW+ E G L V L GH ++ C+
Sbjct: 196 YG----HTSTVRCMHLHEKRVV--SGSRDATLRVWDIET--GQCLHV--LMGHVAAVRCV 245
Query: 283 AVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLV 342
V SG+ D +++W TCL L+GH V L D ++V
Sbjct: 246 QYDGRRVVSGAYDFMVKVWD--PETETCLHTLQGHTNRVYSLQF----------DGIHVV 293
Query: 343 CSGSLDCDIKVWQIS 357
SGSLD I+VW +
Sbjct: 294 -SGSLDTSIRVWDVE 307
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 129/314 (41%), Gaps = 63/314 (20%)
Query: 15 LKGHNSYV-SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKS 73
LKGH+ +V + L G + +GS DN ++ W + + + + + + G V S
Sbjct: 114 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVW--SAVTGKCLRTLVGHT-------GGVWS 164
Query: 74 LVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRH 133
+ + + S D ++VW E H Y +T+
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV---------------------- 202
Query: 134 KTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVAL 193
C +H VS S D T+++W +CL + H A+ V
Sbjct: 203 -RCMHLHEKRVVSG-------------SRDATLRVWDIETGQCLH-VLMGHVAAVRCVQY 247
Query: 194 SDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS 253
D V +G+ D +KVW P + + + L+ H + + +L DG + SG+ D S
Sbjct: 248 -DGRRVVSGAYDFMVKVW--DP--ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS 300
Query: 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAV 313
I VW+ E GN + L GH M + +++ SG+AD T++IW + CL
Sbjct: 301 IRVWDVET--GN--CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWD--IKTGQCLQT 354
Query: 314 LEG---HRGPVKCL 324
L+G H+ V CL
Sbjct: 355 LQGPNKHQSAVTCL 368
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 54/297 (18%)
Query: 5 SVVDHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIV 64
S V CL TL GH V S + + +GS+D ++ W+ T E + +
Sbjct: 145 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET--GECIHTLYGHTS-- 200
Query: 65 AVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMP 124
V+ + + ++ S +D +RVW I + H +LM
Sbjct: 201 -----TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH------------------VLMG 237
Query: 125 KNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH 184
HV AV + D + S ++D +K+W CL ++ H
Sbjct: 238 ----------------HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL-QGH 278
Query: 185 DDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244
+ + ++ D V +GS D I+VW GN H+L H S + + L ++
Sbjct: 279 TNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELK--DNI 331
Query: 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW 301
L SG D ++ +W+ + + G + H ++ C+ + V + S D T+++W
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 31/235 (13%)
Query: 11 CLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGA 70
C+ TL GH S V + L K + +GS D +R WD T +++ A
Sbjct: 191 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL---------HVLMGHVAA 241
Query: 71 VKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV-- 128
V+ + ++ S D ++VW D + T L TL +R L HV
Sbjct: 242 VRCVQYDGRRVVSGAYDFMVKVW-------DPETETCLHTLQGHTNRVYSLQFDGIHVVS 294
Query: 129 -------QIRRHKTCTWVHHVDAVSAL--ALTKDETLLYSVSWDRTIKIWRTSDFKCLES 179
++ +T +H + +L + + +L S + D T+KIW +CL++
Sbjct: 295 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT 354
Query: 180 I--TNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG 232
+ N H A+ + + + V T S D +K+W G +LV LE SG
Sbjct: 355 LQGPNKHQSAVTCLQFNKNF-VITSSDDGTVKLWDLKTGEFIRNLV-TLESGGSG 407
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 10 HCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG 69
+C+ TL GH S S + L L +G++D+ V+ WD T + Q N +
Sbjct: 310 NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT--GQCLQTLQGPNK----HQS 363
Query: 70 AVKSLVVLADKLFSAHQDHKIRVWKINNQE 99
AV L + + ++ D +++W + E
Sbjct: 364 AVTCLQFNKNFVITSSDDGTVKLWDLKTGE 393
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 37/215 (17%)
Query: 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL 222
D+ I+++ + + K L ++ HD + A+ + G + +GS D+ ++VW G H
Sbjct: 141 DKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH-- 197
Query: 223 VDVLERHNSGINALALSCDGSVLY--SGACDRSIIVWE----------KEEDD------- 263
V E HNS + L + ++ Y +G+ D ++ VW+ EE D
Sbjct: 198 --VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255
Query: 264 --GNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPV 321
N VG LRGH S+ ++ ++V SGS D T+ +W CL +L GH +
Sbjct: 256 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRI 313
Query: 322 KCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
+ RC S S+D I++W +
Sbjct: 314 YSTIYDHERKRC---------ISASMDTTIRIWDL 339
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 45/217 (20%)
Query: 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV 225
+K W F + H ++ +D V TG+ DK I+V+ NKK L
Sbjct: 102 LKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVY--DSINKKFLL--Q 157
Query: 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285
L H+ G+ AL + G +L SG+ DR++ VW+ ++ GH ++ C+ +V
Sbjct: 158 LSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKG----CCTHVFEGHNSTVRCLDIV 212
Query: 286 S----DLVCSGSADKTIRIWR----------GIDRNYTC-----------LAVLEGHRGP 320
+ +GS D T+ +W+ G + +Y + VL GH
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
V+ ++ + +V SGS D + VW ++
Sbjct: 273 VRTVSGHGN-----------IVVSGSYDNTLIVWDVA 298
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 104/262 (39%), Gaps = 43/262 (16%)
Query: 7 VDHHCLTTLKGHNSYVSSLALA-GKFLYTGSSDNEVRSWD----CNTFSSELDQEFLSNN 61
++ L L GH+ V +L A G L +GS+D VR WD C T E +
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 62 NIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQE--PDHQK---YTRLATLPTLGD 116
+IV +K +V + +D+ + VWK+ + PDH + Y + P
Sbjct: 210 DIVEYKN--IKYIV-------TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 117 RAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176
+ +L R H S ++ ++ S S+D T+ +W + KC
Sbjct: 261 YFVGVL--------RGH----------MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC 302
Query: 177 LESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236
L ++ D + + + + S D I++W G L+ L+ H + + L
Sbjct: 303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLL 358
Query: 237 ALSCDGSVLYSGACDRSIIVWE 258
LS L S A D SI W+
Sbjct: 359 RLS--DKFLVSAAADGSIRGWD 378
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 12 LTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSEL 53
+ TL+GH + V L L+ KFL + ++D +R WD N +S +
Sbjct: 345 MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF 386
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 45/142 (31%)
Query: 1 QHNLSVVDH------HCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELD 54
+H+ +V H + + L+GH + V +++ G + +GS DN + WD
Sbjct: 246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV-------- 297
Query: 55 QEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHK------------IRVWKINNQE 99
+K L +L+ D+++S DH+ IR+W + N E
Sbjct: 298 --------------AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343
Query: 100 PDH--QKYTRLATLPTLGDRAI 119
+ Q +T L L L D+ +
Sbjct: 344 LMYTLQGHTALVGLLRLSDKFL 365
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 73/274 (26%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V 199
H D+V ++ LL S S D TIK+W F+C+ ++ + HD +++V++ +GD +
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHI 207
Query: 200 YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259
+ S DK IK+W G V H + + + DG+++ S + D+++ VW
Sbjct: 208 VSASRDKTIKMWEVQTGY----CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Query: 260 EEDDGNILVVGALRGHTKSILCMAVVSD----------------------LVCSGSADKT 297
+ LR H + C++ + + SGS DKT
Sbjct: 264 ATKECK----AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319
Query: 298 IRIW---RGIDRNYTCLAVLEGHRGPVK----------CLAAAID---------NDRC-- 333
I++W G+ CL L GH V+ L+ A D N RC
Sbjct: 320 IKMWDVSTGM-----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 334 ------------DSSDTSYLVCSGSLDCDIKVWQ 355
D T+ V +GS+D +KVW+
Sbjct: 375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 29/233 (12%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIW--RTSDFKCLESITNAHDDAINAVALSDDGD 198
H V+ + +++ S S D TIK+W T DF E H D++ ++ G
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF---ERTLKGHTDSVQDISFDHSGK 163
Query: 199 VYTG-SADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257
+ SAD IK+W + + + H+ ++++++ +G + S + D++I +W
Sbjct: 164 LLASCSADMTIKLW----DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 258 EKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLE 315
E + V GH + + + D L+ S S D+T+R+W + C A L
Sbjct: 220 EVQTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW--VVATKECKAELR 273
Query: 316 GHRGPVKCLAAAIDNDRCDSSDTS-----------YLVCSGSLDCDIKVWQIS 357
HR V+C++ A ++ S+ + + SGS D IK+W +S
Sbjct: 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 129/312 (41%), Gaps = 73/312 (23%)
Query: 14 TLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TLKGH V ++ +GK L + S+D ++ WD F + ++N+ +V
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSV----- 198
Query: 72 KSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIR 131
S++ D + SA +D I++W++
Sbjct: 199 -SIMPNGDHIVSASRDKTIKMWEVQTG--------------------------------- 224
Query: 132 RHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC----------LESIT 181
+ T+ H + V + +D TL+ S S D+T+++W + +C +E I+
Sbjct: 225 -YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 283
Query: 182 NAHDDAINAVALSDDGD----------VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS 231
A + + ++++ + + + +GS DK IK+W S G +LV H++
Sbjct: 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG----HDN 339
Query: 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLV 289
+ + G + S A D+++ VW D N + L H + + + V
Sbjct: 340 WVRGVLFHSGGKFILSCADDKTLRVW----DYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 395
Query: 290 CSGSADKTIRIW 301
+GS D+T+++W
Sbjct: 396 VTGSVDQTVKVW 407
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 98/261 (37%), Gaps = 49/261 (18%)
Query: 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
C+ T+ GH+ VSS+++ G + + S D ++ W+ T + F + V + +
Sbjct: 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYCVKTFTGHREWVRMVR 241
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
++ S D +RVW + +E K +
Sbjct: 242 PNQDGTLIA-----SCSNDQTVRVWVVATKE------------------------CKAEL 272
Query: 129 QIRRH--KTCTWVHHVDAVSALALTKDET--------LLYSVSWDRTIKIWRTSDFKCLE 178
+ RH + +W S T ET L S S D+TIK+W S CL
Sbjct: 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 179 SITNAHDDAINAVALSDDGDVYTGSA-DKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237
++ HD+ + V G A DK ++VW K + L H + +L
Sbjct: 333 TLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVW----DYKNKRCMKTLNAHEHFVTSLD 387
Query: 238 LSCDGSVLYSGACDRSIIVWE 258
+ +G+ D+++ VWE
Sbjct: 388 FHKTAPYVVTGSVDQTVKVWE 408
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 11 CLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDC 46
C+ TL H +V+SL ++ TGS D V+ W+C
Sbjct: 372 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 37/215 (17%)
Query: 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL 222
D+ I+++ + + K L ++ HD + A+ + G + +GS D+ ++VW G H
Sbjct: 141 DKXIRVYDSINKKFLLQLS-GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH-- 197
Query: 223 VDVLERHNSGINALALSCDGSVLY--SGACDRSIIVWE----------KEEDD------- 263
V E HNS + L + ++ Y +G+ D ++ VW+ EE D
Sbjct: 198 --VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255
Query: 264 --GNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPV 321
N VG LRGH S+ ++ ++V SGS D T+ +W CL +L GH +
Sbjct: 256 PEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXK--CLYILSGHTDRI 313
Query: 322 KCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
+ RC S S D I++W +
Sbjct: 314 YSTIYDHERKRC---------ISASXDTTIRIWDL 339
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 45/217 (20%)
Query: 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV 225
+K W F + H ++ +D V TG+ DK I+V+ NKK L
Sbjct: 102 LKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVY--DSINKKFLL--Q 157
Query: 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285
L H+ G+ AL + G +L SG+ DR++ VW+ ++ GH ++ C+ +V
Sbjct: 158 LSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKG----CCTHVFEGHNSTVRCLDIV 212
Query: 286 S----DLVCSGSADKTIRIWR----------GIDRNYTC-----------LAVLEGHRGP 320
+ +GS D T+ +W+ G + +Y + VL GH
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
V+ ++ + +V SGS D + VW ++
Sbjct: 273 VRTVSGHGN-----------IVVSGSYDNTLIVWDVA 298
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 103/262 (39%), Gaps = 43/262 (16%)
Query: 7 VDHHCLTTLKGHNSYVSSLALA-GKFLYTGSSDNEVRSWD----CNTFSSELDQEFLSNN 61
++ L L GH+ V +L A G L +GS+D VR WD C T E +
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 62 NIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQE--PDHQK---YTRLATLPTLGD 116
+IV +K +V + +D+ + VWK+ + PDH + Y + P
Sbjct: 210 DIVEYKN--IKYIV-------TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260
Query: 117 RAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176
+ +L R H S ++ ++ S S+D T+ +W + KC
Sbjct: 261 YFVGVL--------RGH----------XASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKC 302
Query: 177 LESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236
L ++ D + + + + S D I++W G L L+ H + + L
Sbjct: 303 LYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENG----ELXYTLQGHTALVGLL 358
Query: 237 ALSCDGSVLYSGACDRSIIVWE 258
LS L S A D SI W+
Sbjct: 359 RLS--DKFLVSAAADGSIRGWD 378
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 14 TLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSEL 53
TL+GH + V L L+ KFL + ++D +R WD N +S +
Sbjct: 347 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF 386
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 45/142 (31%)
Query: 1 QHNLSVVDH------HCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELD 54
+H+ +V H + + L+GH + V +++ G + +GS DN + WD
Sbjct: 246 EHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV-------- 297
Query: 55 QEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHK------------IRVWKINNQE 99
K L +L+ D+++S DH+ IR+W + N E
Sbjct: 298 --------------AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGE 343
Query: 100 PDH--QKYTRLATLPTLGDRAI 119
+ Q +T L L L D+ +
Sbjct: 344 LXYTLQGHTALVGLLRLSDKFL 365
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 99/221 (44%), Gaps = 36/221 (16%)
Query: 157 LYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS--DDGDVYTGSADKKIKVWRRS 214
L S S DRT++IW +C S+T + +D + VA+S D + GS D+ ++VW
Sbjct: 180 LVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 215 PGNKKHSLVDVLER-------HNSGINALALSCDGSVLYSGACDRSIIVWE--------- 258
G LV+ L+ H + ++ + DG + SG+ DRS+ +W
Sbjct: 238 TG----FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293
Query: 259 -KEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLE 315
K + G V GH +L +A + + SGS D+ + W N L +L+
Sbjct: 294 SKTPNSGTCEVT--YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN--PLLMLQ 349
Query: 316 GHRGPVKCLAAAIDNDRCDSSDTSY-LVCSGSLDCDIKVWQ 355
GHR V +A A S Y + +GS DC ++W+
Sbjct: 350 GHRNSVISVAVA----NGSSLGPEYNVFATGSGDCKARIWK 386
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 119/285 (41%), Gaps = 64/285 (22%)
Query: 21 YVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL- 77
Y+ S+ + GKFL TG+ D +R WD + N IV + +G + + L
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWD------------IENRKIVMILQGHEQDIYSLD 172
Query: 78 ----ADKLFSAHQDHKIRVWKINNQE-----------------PDHQKYTRLATLPTLGD 116
DKL S D +R+W + + P KY +L D
Sbjct: 173 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL----D 228
Query: 117 RAIKLLMPKNHVQIRR--HKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW----- 169
RA+++ + + R + + H D+V ++ T+D + S S DR++K+W
Sbjct: 229 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288
Query: 170 ------RTSDFKCLESITNAHDDAINAVALS-DDGDVYTGSADKKIKVWRRSPGNKKHSL 222
+T + E H D + +VA + +D + +GS D+ + W + GN
Sbjct: 289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP---- 344
Query: 223 VDVLERHNSGI------NALALSCDGSVLYSGACDRSIIVWEKEE 261
+ +L+ H + + N +L + +V +G+ D +W+ ++
Sbjct: 345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 35/249 (14%)
Query: 122 LMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT 181
L+P N ++ +D+ S K +T Y + ++ + R D + +S+
Sbjct: 5 LVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALP--REIDVELHKSLD 62
Query: 182 NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPG------------NKKHSLVDVLERH 229
H + V S+DG+ +K +V+R S G NK ++
Sbjct: 63 --HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 120
Query: 230 NSG--INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS- 286
+S I ++ S DG L +GA DR I +W+ E N +V L+GH + I +
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE----NRKIVMILQGHEQDIYSLDYFPS 176
Query: 287 -DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345
D + SGS D+T+RIW R C L G V +A + D Y + +G
Sbjct: 177 GDKLVSGSGDRTVRIWDL--RTGQCSLTLSIEDG-VTTVAVS-------PGDGKY-IAAG 225
Query: 346 SLDCDIKVW 354
SLD ++VW
Sbjct: 226 SLDRAVRVW 234
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 146/363 (40%), Gaps = 56/363 (15%)
Query: 16 KGHNSYVSSLALA--GKFLYTGSSDNEVRSWD----CNTFSSELDQEF---LSNNNIVAV 66
+GH S+V + + G T S D +R W+ C + L QE N + +
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 67 GKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLL-MPK 125
++ L ++A K + D+ H +Y D AIK++ +P
Sbjct: 946 AVDNIRGLQLIAGK--TGQIDYLPEAQVSCCCLSPHLEYVAFGD----EDGAIKIIELPN 999
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW--RTSDFKCLESITNA 183
N V + V H AV + T D L S S D I++W +T D+ L+ A
Sbjct: 1000 NRV------FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----A 1049
Query: 184 HDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243
H + + L D + + S D +KVW G + H + + A+S D +
Sbjct: 1050 HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT----CHQGTVLSCAISSDAT 1105
Query: 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
S + D++ +W + + + L+GH + C A D L+ +G + IRIW
Sbjct: 1106 KFSSTSADKTAKIWSFDL----LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Query: 302 RGIDRN--YTC--LAVLEG---HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354
D ++C ++V EG H G V D C S D+ LV +G +K W
Sbjct: 1162 NVSDGQLLHSCAPISVEEGTATHGGWV--------TDVCFSPDSKTLVSAGGY---LKWW 1210
Query: 355 QIS 357
++
Sbjct: 1211 NVA 1213
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 16/210 (7%)
Query: 99 EPDHQKYTRLATLPTL--GDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL 156
EP+ + R A L GD L N I+ H DAV ++D
Sbjct: 577 EPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQR 636
Query: 157 LYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS-DDGDVYTGSADKKIKVWRRSP 215
+ S D+T+++++ + L I AH+D + A S DD + T SADKK+K+W +
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 695
Query: 216 GNKKHSLVDVLERHNSGINALALSCDGS--VLYSGACDRSIIVWEKEEDDGNILVVGALR 273
G LV + H+ +N + + +L +G+ D + +W+ + + +
Sbjct: 696 GK----LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR----NTMF 747
Query: 274 GHTKSILCMAVVSD--LVCSGSADKTIRIW 301
GHT S+ D L+ S SAD T+R+W
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 12 LTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWD 45
L LKGHN V S+ +L G L TG + E+R W+
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 146/363 (40%), Gaps = 56/363 (15%)
Query: 16 KGHNSYVSSLALA--GKFLYTGSSDNEVRSWD----CNTFSSELDQEF---LSNNNIVAV 66
+GH S+V + + G T S D +R W+ C + L QE N + +
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 67 GKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLL-MPK 125
++ L ++A K + D+ H +Y D AIK++ +P
Sbjct: 939 AVDNIRGLQLIAGK--TGQIDYLPEAQVSCCCLSPHLEYVAFGD----EDGAIKIIELPN 992
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW--RTSDFKCLESITNA 183
N V + V H AV + T D L S S D I++W +T D+ L+ A
Sbjct: 993 NRV------FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----A 1042
Query: 184 HDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243
H + + L D + + S D +KVW G + H + + A+S D +
Sbjct: 1043 HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT----CHQGTVLSCAISSDAT 1098
Query: 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
S + D++ +W + + + L+GH + C A D L+ +G + IRIW
Sbjct: 1099 KFSSTSADKTAKIWSFDL----LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Query: 302 RGIDRN--YTC--LAVLEG---HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354
D ++C ++V EG H G V D C S D+ LV +G +K W
Sbjct: 1155 NVSDGQLLHSCAPISVEEGTATHGGWV--------TDVCFSPDSKTLVSAGGY---LKWW 1203
Query: 355 QIS 357
++
Sbjct: 1204 NVA 1206
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 16/210 (7%)
Query: 99 EPDHQKYTRLATLPTL--GDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL 156
EP+ + R A L GD L N I+ H DAV ++D
Sbjct: 570 EPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQR 629
Query: 157 LYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS-DDGDVYTGSADKKIKVWRRSP 215
+ S D+T+++++ + L I AH+D + A S DD + T SADKK+K+W +
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Query: 216 GNKKHSLVDVLERHNSGINALALSCDGS--VLYSGACDRSIIVWEKEEDDGNILVVGALR 273
G LV + H+ +N + + +L +G+ D + +W+ + + +
Sbjct: 689 GK----LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR----NTMF 740
Query: 274 GHTKSILCMAVVSD--LVCSGSADKTIRIW 301
GHT S+ D L+ S SAD T+R+W
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 12 LTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWD 45
L LKGHN V S+ +L G L TG + E+R W+
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 138/313 (44%), Gaps = 33/313 (10%)
Query: 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVA 65
++ + TL GH VSS+ + G++L + S+D ++ W D +F ++
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTIS 65
Query: 66 VGKGAVKSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRA 118
K + + +D L SA D +++W +++ + H Y +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 119 IKLLMPKNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174
+ ++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+
Sbjct: 126 VSGSFDES-VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 175 KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233
+CL+++ + + ++ V S +G + + D +K+W S G + + I
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCI 243
Query: 234 NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCS 291
A G + SG+ D + +W + + +V L+GHT ++ A +++ S
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIAS 299
Query: 292 GSA--DKTIRIWR 302
+ DKTI++W+
Sbjct: 300 AALENDKTIKLWK 312
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L+ L H ++++ S +G L S + D+ I +W DG
Sbjct: 8 KPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 63
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFC------ 115
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 116 ---CNFNPQSNLIVSGSFDESVRIWDV 139
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 138/313 (44%), Gaps = 33/313 (10%)
Query: 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVA 65
++ + TL GH VSS+ + G++L + S+D ++ W D +F ++
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTIS 65
Query: 66 VGKGAVKSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRA 118
K + + +D L SA D +++W +++ + H Y +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 119 IKLLMPKNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174
+ ++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+
Sbjct: 126 VSGSFDES-VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 175 KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233
+CL+++ + + ++ V S +G + + D +K+W S G + + I
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG-HKNEKYCI 243
Query: 234 NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCS 291
A G + SG+ D + +W + + +V L+GHT ++ A +++ S
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIAS 299
Query: 292 GSA--DKTIRIWR 302
+ DKTI++W+
Sbjct: 300 AALENDKTIKLWK 312
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L+ L H ++++ S +G L S + D+ I +W DG
Sbjct: 8 KPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 63
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFC------ 115
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 116 ---CNFNPQSNLIVSGSFDESVRIWDV 139
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 67
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 128 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 187 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 245
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 246 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 301
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 302 KTIKLWK 308
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
Query: 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR 273
+P ++L L H ++++ S +G L S + D+ I +W DG +
Sbjct: 6 TPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKTIS 61
Query: 274 GHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDND 331
GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFC-------- 111
Query: 332 RCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 112 -CNFNPQSNLIVSGSFDESVRIWDV 135
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 98 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 156
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 157 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 191
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 192 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 237
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 293
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 294 ASAALENDKTIKLWKSD 310
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 68
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 129 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 246
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 247 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 302
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 303 KTIKLWK 309
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L L H ++++ S +G L S + D+ I +W DG
Sbjct: 5 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 60
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFC------ 112
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 113 ---CNFNPQSNLIVSGSFDESVRIWDV 136
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 157
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 158 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 192
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 193 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 294
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 295 ASAALENDKTIKLWKSD 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 64
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 125 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 184 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 242
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 243 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 298
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 299 KTIKLWK 305
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L L H ++++ S +G L S + D+ I +W DG
Sbjct: 1 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 56
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFC------ 108
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 109 ---CNFNPQSNLIVSGSFDESVRIWDV 132
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 95 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 153
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 154 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 188
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 189 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 290
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 291 ASAALENDKTIKLWKSD 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 68
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 129 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 246
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 247 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 302
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 303 KTIKLWK 309
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L L H ++++ S +G L S + D+ I +W DG
Sbjct: 5 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 60
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFC------ 112
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 113 ---CNFNPQSNLIVSGSFDESVRIWDV 136
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 157
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 158 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 192
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 193 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 294
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 295 ASAALENDKTIKLWKSD 311
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 74
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 135 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 252
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 253 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 309 KTIKLWK 315
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L L H ++++ S +G L S + D+ I +W DG
Sbjct: 11 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 66
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFC------ 118
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 119 ---CNFNPQSNLIVSGSFDESVRIWDV 142
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 163
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 164 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 198
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 199 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 300
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 301 ASAALENDKTIKLWKSD 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 69
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 130 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 189 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 247
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 248 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 303
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 304 KTIKLWK 310
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L L H ++++ S +G L S + D+ I +W DG
Sbjct: 6 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 61
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFC------ 113
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 114 ---CNFNPQSNLIVSGSFDESVRIWDV 137
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 100 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 158
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 159 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 193
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 194 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 239
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 295
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 296 ASAALENDKTIKLWKSD 312
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 74
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 135 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 252
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 253 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 309 KTIKLWK 315
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L L H ++++ S +G L S + D+ I +W DG
Sbjct: 11 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 66
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFC------ 118
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 119 ---CNFNPQSNLIVSGSFDESVRIWDV 142
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 163
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 164 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 198
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 199 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 300
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 301 ASAALENDKTIKLWKSD 317
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 85
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 146 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 205 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 263
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 264 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 319
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 320 KTIKLWK 326
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L L H ++++ S +G L S + D+ I +W DG
Sbjct: 22 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 77
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFC------ 129
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 130 ---CNFNPQSNLIVSGSFDESVRIWDV 153
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 174
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 175 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 209
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 210 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 255
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 256 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 311
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 312 ASAALENDKTIKLWKSD 328
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 74
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 135 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 252
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 253 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 308
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 309 KTIKLWK 315
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L L H ++++ S +G L S + D+ I +W DG
Sbjct: 11 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 66
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFC------ 118
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 119 ---CNFNPQSNLIVSGSFDESVRIWDV 142
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 163
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 164 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 198
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 199 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 300
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 301 ASAALENDKTIKLWKSD 317
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 73
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 134 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 193 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 251
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 252 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 307
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 308 KTIKLWK 314
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L L H ++++ S +G L S + D+ I +W DG
Sbjct: 10 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 65
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFC------ 117
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 118 ---CNFNPQSNLIVSGSFDESVRIWDV 141
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 104 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 162
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 163 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 197
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 198 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 243
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 299
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 300 ASAALENDKTIKLWKSD 316
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 134/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L S+D ++ W D +F ++ K +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW------GAYDGKF---EKTISGHKLGI 71
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 132 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 249
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 250 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 306 KTIKLWK 312
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI 279
++L L H ++++ S +G L + + D+ I +W DG + GH I
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY--DGKF--EKTISGHKLGI 71
Query: 280 LCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337
+A SD L+ S S DKT++IW + CL L+GH V C C+ +
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFC---------CNFNP 120
Query: 338 TSYLVCSGSLDCDIKVWQI 356
S L+ SGS D +++W +
Sbjct: 121 QSNLIVSGSFDESVRIWDV 139
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 160
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 161 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 195
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 196 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 298 ASAALENDKTIKLWKSD 314
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 90
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 151 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 268
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 324
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 325 KTIKLWK 331
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L L H ++++ S +G L S + D+ I +W DG
Sbjct: 27 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 82
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFC------ 134
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 135 ---CNFNPQSNLIVSGSFDESVRIWDV 158
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 179
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 180 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 214
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 215 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 260
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 316
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 317 ASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 92
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 153 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 212 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 270
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMA--VVSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 271 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 326
Query: 296 KTIRIWR 302
KTI++W+
Sbjct: 327 KTIKLWK 333
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271
+ +P ++L L H ++++ S +G L S + D+ I +W DG
Sbjct: 29 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKT 84
Query: 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
+ GH I +A SD L+ S S DKT++IW + CL L+GH V C
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFC------ 136
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C+ + S L+ SGS D +++W +
Sbjct: 137 ---CNFNPQSNLIVSGSFDESVRIWDV 160
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHF 181
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 182 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 216
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 217 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 262
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 263 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 318
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +W+ +
Sbjct: 319 ASAALENDKTIKLWKSD 335
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 71
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 132 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + +++
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 251 -GGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 296 KTIRIWR 302
KTI++++
Sbjct: 306 KTIKLYK 312
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI 279
++L L H ++++ S +G L S + D+ I +W DG + GH I
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKTISGHKLGI 71
Query: 280 LCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337
+A SD L+ S S DKT++IW + CL L+GH V C C+ +
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFC---------CNFNP 120
Query: 338 TSYLVCSGSLDCDIKVWQI 356
S L+ SGS D +++W +
Sbjct: 121 QSNLIVSGSFDESVRIWDV 139
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 160
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 161 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 195
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 196 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A S G + +GS D + +W + +V L+ H + + A +++
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNL----QTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 246 YSGAC--DRSIIVWEKE 260
S A D++I +++ +
Sbjct: 298 ASAALENDKTIKLYKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 135/307 (43%), Gaps = 33/307 (10%)
Query: 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
TL GH VSS+ + G++L + S+D ++ W D +F ++ K +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKF---EKTISGHKLGI 71
Query: 72 KSLVVLADK--LFSAHQDHKIRVWKINNQE-----PDHQKYTRLATLPTLGDRAIKLLMP 124
+ +D L SA D +++W +++ + H Y + +
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 125 KNHVQIRRHKTC----TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
++ V+I KT T H D VSA+ +D +L+ S S+D +IW T+ +CL+++
Sbjct: 132 ES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 181 TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
+ + ++ V S +G + + D +K+W S G + + I A
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSV 249
Query: 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSA--D 295
G + SG+ D + +W + + +V L+GHT ++ A +++ S + D
Sbjct: 250 TGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALEND 305
Query: 296 KTIRIWR 302
KTI++++
Sbjct: 306 KTIKLFK 312
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI 279
++L L H ++++ S +G L S + D+ I +W DG + GH I
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKF--EKTISGHKLGI 71
Query: 280 LCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337
+A SD L+ S S DKT++IW + CL L+GH V C C+ +
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFC---------CNFNP 120
Query: 338 TSYLVCSGSLDCDIKVWQI 356
S L+ SGS D +++W +
Sbjct: 121 QSNLIVSGSFDESVRIWDV 139
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 45/206 (21%)
Query: 11 CLTTLKGHNSYV--SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK 68
CL TLKGH++YV + + +GS D VR WD T L ++ + AV
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHF 160
Query: 69 GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHV 128
SL+V S+ D R+W T + +K L+ ++
Sbjct: 161 NRDGSLIV------SSSYDGLCRIWD------------------TASGQCLKTLIDDDN- 195
Query: 129 QIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
VS + + + + + + D T+K+W S KCL++ T ++
Sbjct: 196 --------------PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 189 NAVA-LSDDGD--VYTGSADKKIKVW 211
A S G + +GS D + +W
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIW 267
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 136/357 (38%), Gaps = 47/357 (13%)
Query: 16 KGHNSYVSSLALA--GKFLYTGSSDNEVRSWD----CNTFSSELDQEF---LSNNNIVAV 66
+GH S+V + + G T S D +R W+ C + L QE N ++ +
Sbjct: 885 RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVL 944
Query: 67 GKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDR--AIKLLMP 124
++ L ++ + + D+ H +Y GD AI++L
Sbjct: 945 AVDHIRRLQLINGR--TGQIDYLTEAQVSCCCLSPHLQYI------AFGDENGAIEILEL 996
Query: 125 KNH--VQIR-RHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT 181
N+ Q R +HK W + T DE L S S D I++W KC+
Sbjct: 997 VNNRIFQSRFQHKKTVW--------HIQFTADEKTLISSSDDAEIQVWNWQLDKCI--FL 1046
Query: 182 NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241
H + + L + + + S D +KVW GNK+ V H + + +S D
Sbjct: 1047 RGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFV----CHQGTVLSCDISHD 1102
Query: 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMA--VVSDLVCSGSADKTIR 299
+ S + D++ +W + +L + LRGH + C A V S L+ +G + IR
Sbjct: 1103 ATKFSSTSADKTAKIWSFDL----LLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIR 1158
Query: 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
IW + L G D C S D L+ +G IK W +
Sbjct: 1159 IWNVSNGELLHLCAPLSEEGAAT--HGGWVTDLCFSPDGKMLISAGGY---IKWWNV 1210
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 14/172 (8%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS-DDGDV 199
H DAV ++D + S D+T+++++ + L I AH+D + A S DD +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI-KAHEDEVLCCAFSTDDRFI 678
Query: 200 YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL--SCDGSVLYSGACDRSIIVW 257
T S DKK+K+W G LV + H+ +N S +L +G+ D + +W
Sbjct: 679 ATCSVDKKVKIWNSMTG----ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 258 EKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRN 307
+ + + + GHT S+ D L+ S SAD T+++W N
Sbjct: 735 DLNQKECR----NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 225 VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV 284
V+ H + S DG + S D+++ V++ E G L+ ++ H +LC A
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAET--GEKLL--EIKAHEDEVLCCAF 671
Query: 285 VSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSY-- 340
+D + + S DK ++IW + + + H V C C +++S+
Sbjct: 672 STDDRFIATCSVDKKVKIWNSMTGEL--VHTYDEHSEQVNC---------CHFTNSSHHL 720
Query: 341 LVCSGSLDCDIKVWQIS 357
L+ +GS DC +K+W ++
Sbjct: 721 LLATGSSDCFLKLWDLN 737
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 156 LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS-DDGDVYTGSADKKIKVWRRS 214
LL + S D +K+W + +C ++ H +++N S DD + + SAD +K+W +
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT 779
Query: 215 PGNKKHSL 222
N++ S+
Sbjct: 780 SANERKSI 787
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY 200
H V +L+L D L S + D + K+W + C ++ T H+ INA+ +G+ +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAF 252
Query: 201 -TGSADKKIKVW--RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257
TGS D +++ R +S +++ GI +++ S G +L +G D + VW
Sbjct: 253 ATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNCNVW 308
Query: 258 EKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
+ + D G L GH + C+ V D V +GS D ++IW
Sbjct: 309 DALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 199 VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
+ + S D K+ +W NK H++ +S + A + G+ + G D ++
Sbjct: 81 LVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 136
Query: 259 KEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317
+ +GN+ V L GHT + C + D + + S D T +W GH
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD--IETGQQTTTFTGH 194
Query: 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLVR 362
G V L+ A D + L SG+ D K+W + + R
Sbjct: 195 TGDVMSLSLAPD---------TRLFVSGACDASAKLWDVREGMCR 230
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 183 AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242
H ++ DD + T S D +W + H + +L+L+ D
Sbjct: 152 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDI----ETGQQTTTFTGHTGDVMSLSLAPDT 207
Query: 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--LCMAVVSDLVCSGSADKTIRI 300
+ SGACD S +W+ E + GH I +C + +GS D T R+
Sbjct: 208 RLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 263
Query: 301 W 301
+
Sbjct: 264 F 264
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY 200
H V +L+L D L S + D + K+W + C ++ T H+ INA+ +G+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAF 241
Query: 201 -TGSADKKIKVW--RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257
TGS D +++ R +S +++ GI +++ S G +L +G D + VW
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 258 EKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
+ + D G L GH + C+ V D V +GS D ++IW
Sbjct: 298 DALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 199 VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
+ + S D K+ +W NK H++ +S + A + G+ + G D ++
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 259 KEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317
+ +GN+ V L GHT + C + D + + S D T +W GH
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD--IETGQQTTTFTGH 183
Query: 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLVR 362
G V L+ A D + L SG+ D K+W + + R
Sbjct: 184 TGDVMSLSLAPD---------TRLFVSGACDASAKLWDVREGMCR 219
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 183 AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242
H ++ DD + T S D +W + H + +L+L+ D
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDI----ETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--LCMAVVSDLVCSGSADKTIRI 300
+ SGACD S +W+ E + GH I +C + +GS D T R+
Sbjct: 197 RLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Query: 301 W 301
+
Sbjct: 253 F 253
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY 200
H V +L+L D L S + D + K+W + C ++ T H+ INA+ +G+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAF 241
Query: 201 -TGSADKKIKVW--RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257
TGS D +++ R +S +++ GI +++ S G +L +G D + VW
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 258 EKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
+ + D G L GH + C+ V D V +GS D ++IW
Sbjct: 298 DALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 199 VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
+ + S D K+ +W NK H++ +S + A + G+ + G D ++
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 259 KEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317
+ +GN+ V L GHT + C + D + + S D T +W GH
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD--IETGQQTTTFTGH 183
Query: 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLVR 362
G V L+ A D + L SG+ D K+W + + R
Sbjct: 184 TGDVMSLSLAPD---------TRLFVSGACDASAKLWDVREGMCR 219
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 183 AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242
H ++ DD + T S D +W + H + +L+L+ D
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDI----ETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--LCMAVVSDLVCSGSADKTIRI 300
+ SGACD S +W+ E + GH I +C + +GS D T R+
Sbjct: 197 RLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Query: 301 W 301
+
Sbjct: 253 F 253
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY 200
H V +L+L D L S + D + K+W + C ++ T H+ INA+ +G+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAF 241
Query: 201 -TGSADKKIKVW--RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257
TGS D +++ R +S +++ GI +++ S G +L +G D + VW
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 258 EKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
+ + D G L GH + C+ V D V +GS D ++IW
Sbjct: 298 DALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 199 VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
+ + S D K+ +W NK H++ +S + A + G+ + G D ++
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 259 KEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317
+ +GN+ V L GHT + C + D + + S D T +W GH
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD--IETGQQTTTFTGH 183
Query: 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLVR 362
G V L+ A D + L SG+ D K+W + + R
Sbjct: 184 TGDVMSLSLAPD---------TRLFVSGACDASAKLWDVREGMCR 219
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 183 AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242
H ++ DD + T S D +W + H + +L+L+ D
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDI----ETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--LCMAVVSDLVCSGSADKTIRI 300
+ SGACD S +W+ E + GH I +C + +GS D T R+
Sbjct: 197 RLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Query: 301 W 301
+
Sbjct: 253 F 253
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY 200
H V +L+L D L S + D + K+W + C ++ T H+ INA+ +G+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAF 241
Query: 201 -TGSADKKIKVW--RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257
TGS D +++ R +S +++ GI +++ S G +L +G D + VW
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNCNVW 297
Query: 258 EKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
+ + D G L GH + C+ V D V +GS D ++IW
Sbjct: 298 DALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 199 VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
+ + S D K+ +W NK H++ +S + A + G+ + G D ++
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 259 KEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317
+ +GN+ V L GHT + C + D + + S D T +W GH
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD--IETGQQTTTFTGH 183
Query: 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLVR 362
G V L+ A D + L SG+ D K+W + + R
Sbjct: 184 TGDVMSLSLAPD---------TRLFVSGACDASAKLWDVREGMCR 219
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 183 AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242
H ++ DD + T S D +W + H + +L+L+ D
Sbjct: 141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDI----ETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--LCMAVVSDLVCSGSADKTIRI 300
+ SGACD S +W+ E + GH I +C + +GS D T R+
Sbjct: 197 RLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Query: 301 W 301
+
Sbjct: 253 F 253
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 41/247 (16%)
Query: 121 LLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180
L KN + K+ H + +SA + T + + + S D T +W + L+S
Sbjct: 135 LTFDKNENMAAKKKSV--AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 181 TNAHDDAINA-VALSDDGDVY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238
D + +A S+ G+ + +G DKK VW G V E H S +N++
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ----CVQAFETHESDVNSVRY 248
Query: 239 SCDGSVLYSGA-----------CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287
G SG+ DR + ++ KE ++ GA S + ++
Sbjct: 249 YPSGDAFASGSDDATCRLYDLRADREVAIYSKES-----IIFGA------SSVDFSLSGR 297
Query: 288 LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347
L+ +G D TI +W + + +++L GH V L + D T++ CSGS
Sbjct: 298 LLFAGYNDYTINVWDVLKGSR--VSILFGHENRVSTLRVSPDG-------TAF--CSGSW 346
Query: 348 DCDIKVW 354
D ++VW
Sbjct: 347 DHTLRVW 353
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 15/167 (8%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY 200
H VS +AL+ + S SWD ++++W + +C D ++ D+ +
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 201 TGSADKKIKVWRRSPGNKKHSLVDVLER--HNSGINALAL--SCDGSVLYSGACDRSIIV 256
+G D ++VW N K + L R H ++ + S D V+ SG D + V
Sbjct: 126 SGGRDNALRVW-----NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 257 WEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301
W D +V L+GHT + + V D L S D R+W
Sbjct: 181 W----DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 123/305 (40%), Gaps = 62/305 (20%)
Query: 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK 72
L+GH+++VS +AL+ G F + S D+ +R W N + + +FL + V
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLW--NLQNGQCQYKFLGHTK-------DVL 113
Query: 73 SLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQI 130
S+ D ++ S +D+ +RVW + + + TL A
Sbjct: 114 SVAFSPDNRQIVSGGRDNALRVWNVKGE-----------CMHTLSRGA------------ 150
Query: 131 RRHKTCTWVHHVDAVSALALTK--DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
H D VS + + D ++ S WD +K+W + + + + H + +
Sbjct: 151 ----------HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL-KGHTNYV 199
Query: 189 NAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247
+V +S DG + S D ++W + G + + IN + S +
Sbjct: 200 TSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA-----AGAPINQICFSPN-RYWMC 253
Query: 248 GACDRSIIVWEKEEDDGNILVVGALRGHTKSIL-CMAVV----SDLVCSGSADKTIRIWR 302
A ++ I +++ E D + + +G K + C+++ + SG D IR+W
Sbjct: 254 AATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW- 312
Query: 303 GIDRN 307
G+ N
Sbjct: 313 GVSEN 317
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 199 VYTGSADKKIKVWRRSPGNKK----HSLVDV-LERHNSGINALALSCDGSVLYSGACDRS 253
V + S DK + W +P + L D LE H++ ++ +ALS +G+ S + D S
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCL 311
+ +W + + GHTK +L +A D + SG D +R+W + C+
Sbjct: 91 LRLWNLQNGQCQYKFL----GHTKDVLSVAFSPDNRQIVSGGRDNALRVW---NVKGECM 143
Query: 312 AVLE--GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
L H V C+ R S + ++ SG D +KVW ++
Sbjct: 144 HTLSRGAHTDWVSCV-------RFSPSLDAPVIVSGGWDNLVKVWDLA 184
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 183 AHDDAINAVALSDDGDV-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241
H ++ VALS++G+ + S D +++W G ++ + H + ++A S D
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLG----HTKDVLSVAFSPD 120
Query: 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDL----VCSGSADKT 297
+ SG D ++ VW + + + L GA HT + C+ L + SG D
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGA---HTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 298 IRIWRGIDRNYTCLAV-LEGHRGPVKCLAAAIDNDRCDSSD 337
+++W D L L+GH V + + D C SSD
Sbjct: 178 VKVW---DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSD 215
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 111/273 (40%), Gaps = 46/273 (16%)
Query: 14 TLKGHNSYVS--SLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSN-NNIVAVGKGA 70
+ KGH+ V +L G + + S D +R WD T E Q F+ + +++++V
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDK 117
Query: 71 VKSLVVLADKLFSAHQDHKIRVWKINNQ-----------------EPDHQKYTRLATLPT 113
S+++ S +D I+VW I Q P+ + T+ +
Sbjct: 118 KASMII------SGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 114 LGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173
G+ + N QI ++ H ++ L + D TL+ S D I +W +
Sbjct: 172 AGNDKMVKAWNLNQFQIE----ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 174 FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233
K + +++ D + ++A S + + IKV+ P LVD L +G
Sbjct: 228 KKAMYTLS--AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP----QYLVDDLRPEFAGY 281
Query: 234 NA--------LALSCDGSVLYSGACDRSIIVWE 258
+A LA S DG L++G D I VW+
Sbjct: 282 SAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 222 LVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILV-VGALRGHTKSI 279
L LE HN + +LA S ++L S + D+++I W+ DD V V + +GH+ +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 280 LCMAVVSD--LVCSGSADKTIRIWR-GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS 336
+ +D S S DKT+R+W Y GH+ V ++D D+ S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVM----SVDIDKKAS- 120
Query: 337 DTSYLVCSGSLDCDIKVWQI 356
++ SGS D IKVW I
Sbjct: 121 ----MIISGSRDKTIKVWTI 136
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 79/235 (33%), Gaps = 75/235 (31%)
Query: 69 GAVKSLVVLADK---LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
G V SL A + L SA +D + WK+ D QK+
Sbjct: 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTG---DDQKF-------------------- 54
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185
V +R K H V LT D S SWD+T+++W + + +
Sbjct: 55 -GVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 186 DAINAVALSDDGDVYTGSADKKIKVW--------------------RRSP---------- 215
D ++ + +GS DK IKVW R P
Sbjct: 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168
Query: 216 ----GNKKHSLVDVLER---------HNSGINALALSCDGSVLYSGACDRSIIVW 257
GN K L + HNS IN L S DG+++ S D I++W
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 7 VDHHCLTTLKGHNSYVSSLALAGK--------FLYTGSSDNEVRSWDCNTFSSELDQEFL 58
+ CL TL GHN +VS + + + + +D V++W+ N F E D F+
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--FI 193
Query: 59 S-NNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKI 95
N+NI + +L+ SA +D +I +W +
Sbjct: 194 GHNSNINTLTASPDGTLIA------SAGKDGEIMLWNL 225
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 24/206 (11%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS--DDGD 198
H D + ++A+ + + S S D T+K+W + LE H+ + VA + D
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 199 VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
+G D+ +KVW +L ER + ++ L D + + + D +I +W+
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP-DKPYMITASDDLTIKIWD 214
Query: 259 KEEDDGNILVVGALRGHTK--SILCMAVVSDLVCSGSADKTIRIWR------------GI 304
+ V L GH S ++ SGS D T++IW G+
Sbjct: 215 YQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Query: 305 DRNYTCLAVLEGHRGPVKCLAAAIDN 330
+R++ C+A R +A+ DN
Sbjct: 271 ERSW-CIATHPTGRK--NYIASGFDN 293
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 32/186 (17%)
Query: 15 LKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK 72
+ H Y+ S+A+ ++ +GS D V+ W+ + L+Q F + + V K
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQTFEGHEHFVMCVAFNPK 151
Query: 73 SLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLL----MPKNHV 128
A S D ++VW + P+ TL T +R + + +P
Sbjct: 152 DPSTFA----SGCLDRTVKVWSLGQSTPNF-------TLTTGQERGVNYVDYYPLPDKPY 200
Query: 129 QI------------RRHKTC--TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174
I + K+C T H+ VS ++ S S D T+KIW +S +
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 175 KCLESI 180
K +++
Sbjct: 261 KVEKTL 266
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 24/206 (11%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS--DDGD 198
H D + ++A+ + + S S D T+K+W + LE H+ + VA + D
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 199 VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
+G D+ +KVW +L ER + ++ L D + + + D +I +W+
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP-DKPYMITASDDLTIKIWD 214
Query: 259 KEEDDGNILVVGALRGHTK--SILCMAVVSDLVCSGSADKTIRIWR------------GI 304
+ V L GH S ++ SGS D T++IW G+
Sbjct: 215 YQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270
Query: 305 DRNYTCLAVLEGHRGPVKCLAAAIDN 330
+R++ C+A R +A+ DN
Sbjct: 271 ERSW-CIATHPTGRK--NYIASGFDN 293
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 32/186 (17%)
Query: 15 LKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK 72
+ H Y+ S+A+ ++ +GS D V+ W+ + L+Q F + + V K
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQTFEGHEHFVMCVAFNPK 151
Query: 73 SLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLL----MPKNHV 128
A S D ++VW + P+ TL T +R + + +P
Sbjct: 152 DPSTFA----SGCLDRTVKVWSLGQSTPNF-------TLTTGQERGVNYVDYYPLPDKPY 200
Query: 129 QI------------RRHKTC--TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174
I + K+C T H+ VS ++ S S D T+KIW +S +
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 175 KCLESI 180
K +++
Sbjct: 261 KVEKTL 266
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 134/326 (41%), Gaps = 58/326 (17%)
Query: 70 AVKSLVVLADKLFSAHQDHKIRVWKINNQEP----------DHQKYTRLATLPTLG---- 115
A+ + + AD + SA +D I +WK+ + H + L + G
Sbjct: 387 AIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL 446
Query: 116 ----DRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRT 171
D ++L V RR +V H V ++A + D + S S DRTIK+W T
Sbjct: 447 SGSWDGELRLWDLAAGVSTRR-----FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501
Query: 172 SDFKCLESIT---NAHDDAINAVALSDD---GDVYTGSADKKIKVWRRSPGNKKHSLVDV 225
+C +I+ H D ++ V S + + + S DK +KVW S L
Sbjct: 502 LG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS----NCKLRST 556
Query: 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK-SILCMAV 284
L H ++ +A+S DGS+ SG D +++W+ E G L +L ++ LC +
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE--GKKLY--SLEANSVIHALCFSP 612
Query: 285 VSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC- 343
+C+ + + I+IW + +++E + +K A DN ++ + C
Sbjct: 613 NRYWLCAAT-EHGIKIW-----DLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666
Query: 344 ------------SGSLDCDIKVWQIS 357
SG D I+VW I
Sbjct: 667 SLNWSADGSTLFSGYTDGVIRVWGIG 692
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 126/319 (39%), Gaps = 78/319 (24%)
Query: 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK 72
L GH+ +V + L+ G+F +GS D E+R WD +S V K +
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL--------AAGVSTRRFVGHTKDVLS 477
Query: 73 SLVVLADK-LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIR 131
L ++ + SA +D I++W TLG + +
Sbjct: 478 VAFSLDNRQIVSASRDRTIKLWN------------------TLG-------------ECK 506
Query: 132 RHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN 189
+ H D VS + + + + + S SWD+T+K+W S+ K L S H ++
Sbjct: 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVS 565
Query: 190 AVALSDDGDV-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248
VA+S DG + +G D + +W + G K +SL NS I+AL S + L
Sbjct: 566 TVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-----EANSVIHALCFSPNRYWL-CA 619
Query: 249 ACDRSIIVW-----------------EKEEDDGNILVVGALRGHTKSILCMAVV----SD 287
A + I +W E E+ D + G K I C ++
Sbjct: 620 ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNS----GPAATKRKVIYCTSLNWSADGS 675
Query: 288 LVCSGSADKTIRIWRGIDR 306
+ SG D IR+W GI R
Sbjct: 676 TLFSGYTDGVIRVW-GIGR 693
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 111/273 (40%), Gaps = 46/273 (16%)
Query: 14 TLKGHNSYVS--SLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSN-NNIVAVGKGA 70
+ KGH+ V +L G + + S D +R WD T E Q F+ + +++++V
Sbjct: 54 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDK 111
Query: 71 VKSLVVLADKLFSAHQDHKIRVWKINNQ-----------------EPDHQKYTRLATLPT 113
S+++ S +D I+VW I Q P+ + T+ +
Sbjct: 112 KASMII------SGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 165
Query: 114 LGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173
G+ + N QI ++ H ++ L + D TL+ S D I +W +
Sbjct: 166 AGNDKMVKAWNLNQFQIE----ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 174 FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233
K + +++ D + ++A S + + IKV+ P LVD L +G
Sbjct: 222 KKAMYTLS--AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP----QYLVDDLRPEFAGY 275
Query: 234 N--------ALALSCDGSVLYSGACDRSIIVWE 258
+ +LA S DG L++G D I VW+
Sbjct: 276 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 308
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 222 LVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILV-VGALRGHTKSI 279
L LE HN + +LA S ++L S + D+++I W+ DD V V + +GH+ +
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 280 LCMAVVSD--LVCSGSADKTIRIWR-GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS 336
+ +D S S DKT+R+W Y GH+ V ++D D+ S
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDV----MSVDIDKKAS- 114
Query: 337 DTSYLVCSGSLDCDIKVWQI 356
++ SGS D IKVW I
Sbjct: 115 ----MIISGSRDKTIKVWTI 130
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 79/235 (33%), Gaps = 75/235 (31%)
Query: 69 GAVKSLVVLADK---LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
G V SL A + L SA +D + WK+ D QK+
Sbjct: 12 GWVTSLATSAGQPNLLLSASRDKTLISWKLTG---DDQKF-------------------- 48
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185
V +R K H V LT D S SWD+T+++W + + +
Sbjct: 49 -GVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 102
Query: 186 DAINAVALSDDGDVYTGSADKKIKVW--------------------RRSP---------- 215
D ++ + +GS DK IKVW R P
Sbjct: 103 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT 162
Query: 216 ----GNKKHSLVDVLER---------HNSGINALALSCDGSVLYSGACDRSIIVW 257
GN K L + HNS IN L S DG+++ S D I++W
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 7 VDHHCLTTLKGHNSYVSSLALAGK--------FLYTGSSDNEVRSWDCNTFSSELDQEFL 58
+ CL TL GHN +VS + + + + +D V++W+ N F E D F+
Sbjct: 130 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--FI 187
Query: 59 S-NNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKI 95
N+NI + +L+ SA +D +I +W +
Sbjct: 188 GHNSNINTLTASPDGTLIA------SAGKDGEIMLWNL 219
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 111/273 (40%), Gaps = 46/273 (16%)
Query: 14 TLKGHNSYVS--SLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSN-NNIVAVGKGA 70
+ KGH+ V +L G + + S D +R WD T E Q F+ + +++++V
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDK 117
Query: 71 VKSLVVLADKLFSAHQDHKIRVWKINNQ-----------------EPDHQKYTRLATLPT 113
S+++ S +D I+VW I Q P+ + T+ +
Sbjct: 118 KASMII------SGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 114 LGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173
G+ + N QI ++ H ++ L + D TL+ S D I +W +
Sbjct: 172 AGNDKMVKAWNLNQFQIE----ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 174 FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233
K + +++ D + ++A S + + IKV+ P LVD L +G
Sbjct: 228 KKAMYTLS--AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP----QYLVDDLRPEFAGY 281
Query: 234 N--------ALALSCDGSVLYSGACDRSIIVWE 258
+ +LA S DG L++G D I VW+
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 222 LVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILV-VGALRGHTKSI 279
L LE HN + +LA S ++L S + D+++I W+ DD V V + +GH+ +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 280 LCMAVVSD--LVCSGSADKTIRIWR-GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS 336
+ +D S S DKT+R+W Y GH+ V ++D D+ S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDV----MSVDIDKKAS- 120
Query: 337 DTSYLVCSGSLDCDIKVWQI 356
++ SGS D IKVW I
Sbjct: 121 ----MIISGSRDKTIKVWTI 136
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 79/235 (33%), Gaps = 75/235 (31%)
Query: 69 GAVKSLVVLADK---LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
G V SL A + L SA +D + WK+ D QK+
Sbjct: 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTG---DDQKF-------------------- 54
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185
V +R K H V LT D S SWD+T+++W + + +
Sbjct: 55 -GVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 186 DAINAVALSDDGDVYTGSADKKIKVW--------------------RRSP---------- 215
D ++ + +GS DK IKVW R P
Sbjct: 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168
Query: 216 ----GNKKHSLVDVLER---------HNSGINALALSCDGSVLYSGACDRSIIVW 257
GN K L + HNS IN L S DG+++ S D I++W
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 7 VDHHCLTTLKGHNSYVSSLALAGK--------FLYTGSSDNEVRSWDCNTFSSELDQEFL 58
+ CL TL GHN +VS + + + + +D V++W+ N F E D F+
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--FI 193
Query: 59 S-NNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKI 95
N+NI + +L+ SA +D +I +W +
Sbjct: 194 GHNSNINTLTASPDGTLIA------SAGKDGEIMLWNL 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 111/273 (40%), Gaps = 46/273 (16%)
Query: 14 TLKGHNSYVS--SLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSN-NNIVAVGKGA 70
+ KGH+ V +L G + + S D +R WD T E Q F+ + +++++V
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDK 117
Query: 71 VKSLVVLADKLFSAHQDHKIRVWKINNQ-----------------EPDHQKYTRLATLPT 113
S+++ S +D I+VW I Q P+ + T+ +
Sbjct: 118 KASMII------SGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 114 LGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173
G+ + N QI ++ H ++ L + D TL+ S D I +W +
Sbjct: 172 AGNDKMVKAWNLNQFQIE----ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 174 FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233
K + +++ D + ++A S + + IKV+ P LVD L +G
Sbjct: 228 KKAMYTLS--AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP----QYLVDDLRPEFAGY 281
Query: 234 N--------ALALSCDGSVLYSGACDRSIIVWE 258
+ +LA S DG L++G D I VW+
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 222 LVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILV-VGALRGHTKSI 279
L LE HN + +LA S ++L S + D+++I W+ DD V V + +GH+ +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 280 LCMAVVSD--LVCSGSADKTIRIWR-GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS 336
+ +D S S DKT+R+W Y GH+ V ++D D+ S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVM----SVDIDKKAS- 120
Query: 337 DTSYLVCSGSLDCDIKVWQI 356
++ SGS D IKVW I
Sbjct: 121 ----MIISGSRDKTIKVWTI 136
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 79/235 (33%), Gaps = 75/235 (31%)
Query: 69 GAVKSLVVLADK---LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
G V SL A + L SA +D + WK+ D QK+
Sbjct: 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTG---DDQKF-------------------- 54
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185
V +R K H V LT D S SWD+T+++W + + +
Sbjct: 55 -GVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 186 DAINAVALSDDGDVYTGSADKKIKVW--------------------RRSP---------- 215
D ++ + +GS DK IKVW R P
Sbjct: 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168
Query: 216 ----GNKKHSLVDVLER---------HNSGINALALSCDGSVLYSGACDRSIIVW 257
GN K L + HNS IN L S DG+++ S D I++W
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 7 VDHHCLTTLKGHNSYVSSLALAGK--------FLYTGSSDNEVRSWDCNTFSSELDQEFL 58
+ CL TL GHN +VS + + + + +D V++W+ N F E D F+
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--FI 193
Query: 59 S-NNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKI 95
N+NI + +L+ SA +D +I +W +
Sbjct: 194 GHNSNINTLTASPDGTLIA------SAGKDGEIMLWNL 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 111/273 (40%), Gaps = 46/273 (16%)
Query: 14 TLKGHNSYVS--SLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSN-NNIVAVGKGA 70
+ KGH+ V +L G + + S D +R WD T E Q F+ + +++++V
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDK 117
Query: 71 VKSLVVLADKLFSAHQDHKIRVWKINNQ-----------------EPDHQKYTRLATLPT 113
S+++ S +D I+VW I Q P+ + T+ +
Sbjct: 118 KASMII------SGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 114 LGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173
G+ + N QI ++ H ++ L + D TL+ S D I +W +
Sbjct: 172 AGNDKMVKAWNLNQFQIE----ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 174 FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233
K + +++ D + ++A S + + IKV+ P LVD L +G
Sbjct: 228 KKAMYTLS--AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP----QYLVDDLRPEFAGY 281
Query: 234 N--------ALALSCDGSVLYSGACDRSIIVWE 258
+ +LA S DG L++G D I VW+
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 222 LVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILV-VGALRGHTKSI 279
L LE HN + +LA S ++L S + D+++I W+ DD V V + +GH+ +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 280 LCMAVVSD--LVCSGSADKTIRIWR-GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS 336
+ +D S S DKT+R+W Y GH+ V ++D D+ S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVM----SVDIDKKAS- 120
Query: 337 DTSYLVCSGSLDCDIKVWQI 356
++ SGS D IKVW I
Sbjct: 121 ----MIISGSRDKTIKVWTI 136
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 79/235 (33%), Gaps = 75/235 (31%)
Query: 69 GAVKSLVVLADK---LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
G V SL A + L SA +D + WK+ D QK+
Sbjct: 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTG---DDQKF-------------------- 54
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185
V +R K H V LT D S SWD+T+++W + + +
Sbjct: 55 -GVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 186 DAINAVALSDDGDVYTGSADKKIKVW--------------------RRSP---------- 215
D ++ + +GS DK IKVW R P
Sbjct: 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168
Query: 216 ----GNKKHSLVDVLER---------HNSGINALALSCDGSVLYSGACDRSIIVW 257
GN K L + HNS IN L S DG+++ S D I++W
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 7 VDHHCLTTLKGHNSYVSSLALAGK--------FLYTGSSDNEVRSWDCNTFSSELDQEFL 58
+ CL TL GHN +VS + + + + +D V++W+ N F E D F+
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--FI 193
Query: 59 S-NNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKI 95
N+NI + +L+ SA +D +I +W +
Sbjct: 194 GHNSNINTLTASPDGTLIA------SAGKDGEIMLWNL 225
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 24/214 (11%)
Query: 133 HKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVA 192
K + H D + ++A+ + + S S D T+K+W + LE H+ + VA
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 193 LS--DDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC 250
+ D +G D+ +KVW +L ER + ++ L D + + +
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP-DKPYMITASD 206
Query: 251 DRSIIVWEKEEDDGNILVVGALRGHTK--SILCMAVVSDLVCSGSADKTIRIWR------ 302
D +I +W+ + V L GH S ++ SGS D T++IW
Sbjct: 207 DLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 303 ------GIDRNYTCLAVLEGHRGPVKCLAAAIDN 330
G++R++ C+A R +A+ DN
Sbjct: 263 EKTLNVGLERSW-CIATHPTGRK--NYIASGFDN 293
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 32/186 (17%)
Query: 15 LKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK 72
+ H Y+ S+A+ ++ +GS D V+ W+ + L+Q F + + V K
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQTFEGHEHFVMCVAFNPK 151
Query: 73 SLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLL----MPKNHV 128
A S D ++VW + P+ TL T +R + + +P
Sbjct: 152 DPSTFA----SGCLDRTVKVWSLGQSTPNF-------TLTTGQERGVNYVDYYPLPDKPY 200
Query: 129 QI------------RRHKTC--TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174
I + K+C T H+ VS ++ S S D T+KIW +S +
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 175 KCLESI 180
K +++
Sbjct: 261 KVEKTL 266
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 133 HKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVA 192
K + H D + ++A+ + + S S D T+K+W + LE H+ + VA
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 193 LS--DDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC 250
+ D +G D+ +KVW +L ER + ++ L D + + +
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP-DKPYMITASD 206
Query: 251 DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIW 301
D +I +W+ + V L GH ++ AV ++ SGS D T++IW
Sbjct: 207 DLTIKIWDYQTKS----CVATLEGHMSNV-SFAVFHPTLPIIISGSEDGTLKIW 255
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 81/216 (37%), Gaps = 38/216 (17%)
Query: 15 LKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK 72
+ H Y+ S+A+ ++ +GS D V+ W+ + L+Q F + + V K
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQTFEGHEHFVMCVAFNPK 151
Query: 73 SLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRR 132
A S D ++VW + P+ TL T +R
Sbjct: 152 DPSTFA----SGCLDRTVKVWSLGQSTPNF-------TLTTGQERG-------------- 186
Query: 133 HKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVA 192
V++VD D+ + + S D TIKIW C+ ++ + AV
Sbjct: 187 ------VNYVDYYP----LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 193 LSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLER 228
+ +GS D +K+W S + +L LER
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 8/169 (4%)
Query: 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDV 199
H D +S + + + S S D T+++W + H+ IN+V DG
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263
Query: 200 Y-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSG---INALALSCDGSVLYSGACDRSII 255
+ TGS D +++ G++ +R+++ + ++A S G +L++G +
Sbjct: 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323
Query: 256 VWEKEEDDGNILVVGALR-GHTKSILCMAVVSD--LVCSGSADKTIRIW 301
VW+ + +L +G L+ H I C+ + SD +C+GS DK ++IW
Sbjct: 324 VWDTLLAE-MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 94/233 (40%), Gaps = 35/233 (15%)
Query: 15 LKGHNSYVSSLALAG---KFLYTGSSDNEVRSWDCNTFS--SELDQEFLSNNNIVAVGKG 69
L GH Y SS L TGS D WD T S EF S + V
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT-ADVLSL 211
Query: 70 AVKSLVVLADKLFSAHQDHKIRVWK-----------------INNQE--PDHQKYTRLAT 110
++ SL A+ S D +R+W IN+ + PD Q R T
Sbjct: 212 SINSLN--ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ---RFGT 266
Query: 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170
G + + + +Q+ + + + V+++A + LL++ + +W
Sbjct: 267 GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
Query: 171 TSDFKC---LESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKK 219
T + L ++ N+H+ I+ + LS DG TGS DK +K+W S G++K
Sbjct: 327 TLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS-GHRK 378
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 121/296 (40%), Gaps = 21/296 (7%)
Query: 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSL 74
GHN +++L+ + GK L++ ++ + SWD +T +SN V + +
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTG--------ISNRVFPDVHATMITGI 373
Query: 75 VVLADK-LFSAHQDHKIRVWKINNQEPDHQKYT--RLATLPTLG-----DRAIKLLMPKN 126
+ LF+ D ++V D K +L++ P LG D I +
Sbjct: 374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP-LGLAVSADGDIAVAACYK 432
Query: 127 HVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD 186
H+ I H T V S +AL+ D+ + D + +++ S E T H
Sbjct: 433 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 492
Query: 187 AINAVALSDDGDVYTGSADKKIKVWRRSPGNK-KHSLVDVLERHNSGINALALSCDGSVL 245
I +VA S++G + + D+ KV S N + + + H + + ++ S D L
Sbjct: 493 EITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 246 YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW 301
+G+ D S+IVW + + +++ + + + + S D I+ W
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 607
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI---TNAHDDAINAVALSD 195
V H +V L + D T + S S D+TIKIW + K ++I T D + +
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295
Query: 196 DGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255
+ + SA+ I G S+ V HN I AL+ S DG L+S + I
Sbjct: 296 --ALVSISANGFINFVNPELG----SIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349
Query: 256 VWE 258
W+
Sbjct: 350 SWD 352
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Query: 80 KLFSAHQDHKIRVW-----KINNQEP------DHQK---YTRLATLPTLGDRAIKLLMPK 125
K+ SA D I++W K+ P D Q +T+ A + + I + P+
Sbjct: 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 312
Query: 126 --NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA 183
+ Q+R H A++AL+ + D L+S + I W S +
Sbjct: 313 LGSIDQVRYG-------HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 365
Query: 184 HDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243
H I + + GD++T S D +KV + G+ S V + +S LA+S DG
Sbjct: 366 HATMITGIKTTSKGDLFTVSWDDHLKV-VPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424
Query: 244 VLYSGACDRSIIVW 257
+ + AC + I ++
Sbjct: 425 IAVA-ACYKHIAIY 437
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 199 VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
+ +GS D + ++ P K + H ++++ + DGS+ S D +I+++
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTF----GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218
Query: 259 K--------EEDDG--NILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW 301
EDD N+ G++ G L + + S SADKTI+IW
Sbjct: 219 GVDGTKTGVFEDDSLKNVAHSGSVFG-----LTWSPDGTKIASASADKTIKIW 266
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 106/270 (39%), Gaps = 40/270 (14%)
Query: 14 TLKGHNSYVS--SLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
+ KGH+ V +L G + + S D +R WD T E Q F+ + K V
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT--GETYQRFVGH-------KSDV 110
Query: 72 KSLVV--LADKLFSAHQDHKIRVWKINNQ-------EPDHQKYTRLATLPTLGDRAIKLL 122
S+ + A + S +D I+VW I Q D R+ D ++ ++
Sbjct: 111 XSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTII 170
Query: 123 MPKNHVQIRR------HKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176
N ++ ++ H ++ L + D TL+ S D I +W + K
Sbjct: 171 SAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKA 230
Query: 177 LESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN-- 234
+++ D + ++A S + + IKV+ P LVD L +G +
Sbjct: 231 XYTLS--AQDEVFSLAFSPNRYWLAAATATGIKVFSLDP----QYLVDDLRPEFAGYSKA 284
Query: 235 ------ALALSCDGSVLYSGACDRSIIVWE 258
+LA S DG L++G D I VW+
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 222 LVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILV-VGALRGHTKSI 279
L LE HN + +LA S ++L S + D+++I W+ DD V V + +GH+ +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 280 LCMAVVSD--LVCSGSADKTIRIWR-GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS 336
+ +D S S DKT+R+W Y GH+ V ++D D+ S
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDV----XSVDIDKKASX 121
Query: 337 DTSYLVCSGSLDCDIKVWQI 356
+ SGS D IKVW I
Sbjct: 122 -----IISGSRDKTIKVWTI 136
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 84/244 (34%), Gaps = 49/244 (20%)
Query: 69 GAVKSLVVLADK---LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPK 125
G V SL A + L SA +D + WK+ D QK+
Sbjct: 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTG---DDQKF-------------------- 54
Query: 126 NHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185
V +R K H V LT D S SWD+T+++W + + +
Sbjct: 55 -GVPVRSFK-----GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108
Query: 186 DAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC----- 240
D + + +GS DK IKVW K + L HN ++ + +
Sbjct: 109 DVXSVDIDKKASXIISGSRDKTIKVW-----TIKGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 241 -DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKT 297
D + S D+ + W + + GH +I + D L+ S D
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQ----FQIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 298 IRIW 301
I +W
Sbjct: 220 IXLW 223
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 7 VDHHCLTTLKGHNSYVSSLALAGK--------FLYTGSSDNEVRSWDCNTFSSELDQEFL 58
+ CL TL GHN +VS + + + + +D V++W+ N F E D F+
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD--FI 193
Query: 59 S-NNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKI 95
N+NI + +L+ SA +D +I +W +
Sbjct: 194 GHNSNINTLTASPDGTLIA------SAGKDGEIXLWNL 225
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 47/219 (21%)
Query: 1 QHNLSVVDHHCLTTLKGHNSYVSSLALAGK--FLYTGSSDNEVRSWDCNTFSSELDQEFL 58
Q+ + H LT GHN +VS LAL+ + F + S D +R WD T ++ + F+
Sbjct: 61 QNGYFGIPHKALT---GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY--KRFV 115
Query: 59 SNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGD 116
+ + V S+ D ++ SA + +I++W I LG+
Sbjct: 116 GH-------QSEVYSVAFSPDNRQILSAGAEREIKLWNI------------------LGE 150
Query: 117 RAIKLLMPKNH---VQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173
+NH V R+ + + V A SV WD +K+W T +
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPI--MKSANKVQPFA-----PYFASVGWDGRLKVWNT-N 202
Query: 174 FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVW 211
F+ + AH+ +N +++S +G + TG DKK+ +W
Sbjct: 203 FQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 22/143 (15%)
Query: 225 VLERHNSGINALALSC------DGSVLYSGACDRSIIVWE--KEEDDGNILVV-GALRGH 275
+LE H+ + ++ D VL SG+ D+++++W+ +EE +G + AL GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 276 TKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRC 333
+ +A+ + S S DKT+R+W R T GH+ V +A + DN +
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWD--LRTGTTYKRFVGHQSEVYSVAFSPDNRQ- 132
Query: 334 DSSDTSYLVCSGSLDCDIKVWQI 356
+ S + +IK+W I
Sbjct: 133 --------ILSAGAEREIKLWNI 147
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 53/176 (30%)
Query: 133 HKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVA 192
HK T +H VS LAL+++ S SWD+T+++W + H + +VA
Sbjct: 69 HKALTGHNHF--VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVA 125
Query: 193 LSDDG-DVYTGSADKKIKVW-----------------------RRSP----GNKKHSLVD 224
S D + + A+++IK+W R SP NK
Sbjct: 126 FSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAP 185
Query: 225 ----------------------VLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258
+ H S +N L++S +G + +G D+ +++W+
Sbjct: 186 YFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 138 WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD------FKCLESITNAHDDAINAV 191
WV + A + +D +L S S D+T+ IW+ + F H+ ++ +
Sbjct: 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDL 82
Query: 192 ALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC 250
ALS + + S DK +++W G V H S + ++A S D + S
Sbjct: 83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG----HQSEVYSVAFSPDNRQILSAGA 138
Query: 251 DRSIIVW 257
+R I +W
Sbjct: 139 EREIKLW 145
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 121/306 (39%), Gaps = 42/306 (13%)
Query: 77 LADKLFSAHQDHKIRVWKINNQEPD----------HQKYTRLATLPTLG--------DRA 118
D + SA +D I +WK+ E + H + + + G D
Sbjct: 50 FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109
Query: 119 IKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLE 178
++L RR V H V ++A + D + S S D+TIK+W T
Sbjct: 110 LRLWDLTTGTTTRRF-----VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT 164
Query: 179 SITNAHDDAINAVALSDDGD---VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235
+H + ++ V S + + + DK +KVW + K + + H +N
Sbjct: 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG----HTGYLNT 220
Query: 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD 295
+ +S DGS+ SG D ++W+ E + G G + LC + +C+ +
Sbjct: 221 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALCFSPNRYWLCAATG- 276
Query: 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDS---SDTSYLVCSGSLDCDIK 352
+I+IW + +++ + V ++ + +C S S + +G D ++
Sbjct: 277 PSIKIW-----DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331
Query: 353 VWQISF 358
VWQ++
Sbjct: 332 VWQVTI 337
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 127/305 (41%), Gaps = 69/305 (22%)
Query: 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK 72
L+GH+ +VS + ++ G+F +GS D +R WD T ++ + F+ + V
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT--RRFVGHTK-------DVL 132
Query: 73 SLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQI 130
S+ +D ++ S +D I++W TLG + K VQ
Sbjct: 133 SVAFSSDNRQIVSGSRDKTIKLWN------------------TLG-------VCKYTVQD 167
Query: 131 RRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINA 190
H WV V + ++ S WD+ +K+W ++ K L++ H +N
Sbjct: 168 ESHS--EWVSCV----RFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGHTGYLNT 220
Query: 191 VALSDDGDV-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG--INALALSCDGSVLYS 247
V +S DG + +G D + +W + G ++L + G INAL S + L +
Sbjct: 221 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-------DGGDIINALCFSPNRYWLCA 273
Query: 248 GACDRSIIVWEKEEDDGNILV------VGALRGHTKSILCMAVV----SDLVCSGSADKT 297
A SI +W+ E G I+V V + + C ++ + +G D
Sbjct: 274 -ATGPSIKIWDLE---GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329
Query: 298 IRIWR 302
+R+W+
Sbjct: 330 VRVWQ 334
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 270 GALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAV----LEGHRGPVK 322
G L+GH + +A D++ S S DKTI +W+ + R+ T + L GH V
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK-LTRDETNYGIPQRALRGHSHFV- 89
Query: 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
+D SSD + + SGS D +++W ++
Sbjct: 90 -------SDVVISSDGQFAL-SGSWDGTLRLWDLT 116
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 121/306 (39%), Gaps = 42/306 (13%)
Query: 77 LADKLFSAHQDHKIRVWKINNQEPD----------HQKYTRLATLPTLG--------DRA 118
D + SA +D I +WK+ E + H + + + G D
Sbjct: 27 FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 86
Query: 119 IKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLE 178
++L RR V H V ++A + D + S S D+TIK+W T
Sbjct: 87 LRLWDLTTGTTTRRF-----VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT 141
Query: 179 SITNAHDDAINAVALSDDGD---VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235
+H + ++ V S + + + DK +KVW + K + + H +N
Sbjct: 142 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG----HTGYLNT 197
Query: 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD 295
+ +S DGS+ SG D ++W+ E + G G + LC + +C+ +
Sbjct: 198 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALCFSPNRYWLCAATG- 253
Query: 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDS---SDTSYLVCSGSLDCDIK 352
+I+IW + +++ + V ++ + +C S S + +G D ++
Sbjct: 254 PSIKIW-----DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 308
Query: 353 VWQISF 358
VWQ++
Sbjct: 309 VWQVTI 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 127/305 (41%), Gaps = 69/305 (22%)
Query: 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK 72
L+GH+ +VS + ++ G+F +GS D +R WD T ++ + F+ + V
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT--RRFVGHTK-------DVL 109
Query: 73 SLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQI 130
S+ +D ++ S +D I++W TLG + K VQ
Sbjct: 110 SVAFSSDNRQIVSGSRDKTIKLWN------------------TLG-------VCKYTVQD 144
Query: 131 RRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINA 190
H WV V + ++ S WD+ +K+W ++ K L++ H +N
Sbjct: 145 ESHS--EWVSCV----RFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGHTGYLNT 197
Query: 191 VALSDDGDV-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG--INALALSCDGSVLYS 247
V +S DG + +G D + +W + G ++L + G INAL S + L +
Sbjct: 198 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-------DGGDIINALCFSPNRYWLCA 250
Query: 248 GACDRSIIVWEKEEDDGNILV------VGALRGHTKSILCMAVV----SDLVCSGSADKT 297
A SI +W+ E G I+V V + + C ++ + +G D
Sbjct: 251 -ATGPSIKIWDLE---GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 306
Query: 298 IRIWR 302
+R+W+
Sbjct: 307 VRVWQ 311
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 270 GALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAV----LEGHRGPVK 322
G L+GH + +A D++ S S DKTI +W+ + R+ T + L GH V
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK-LTRDETNYGIPQRALRGHSHFV- 66
Query: 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
+D SSD + + SGS D +++W ++
Sbjct: 67 -------SDVVISSDGQFAL-SGSWDGTLRLWDLT 93
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 27/235 (11%)
Query: 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTL---GDRAIKLLMPK----NHVQI-- 130
K+ S +D +R+W ++Q YT L ++ ++ + L K N V +
Sbjct: 31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFA 90
Query: 131 --RRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188
T + H V +L+ + ++ S SWD+T K+W+ NA
Sbjct: 91 TSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDA 148
Query: 189 NAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248
V+ S++ T SADK IK+W+ K S + HN + LA+ DG +
Sbjct: 149 KVVSFSEN-KFLTASADKTIKLWQNDKVIKTFSGI-----HNDVVRHLAVVDDGHFI--- 199
Query: 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIW 301
+C ++ + G++L GH + C+ ++ D+V G D+T+RIW
Sbjct: 200 SCSNDGLIKLVDXHTGDVLR--TYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIW 251
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 18/209 (8%)
Query: 12 LTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV 71
L TL GH V SL+ + +GS D + W + L S + V
Sbjct: 97 LYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSEN 156
Query: 72 KSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLG-------DRAIKLLMP 124
K L ADK Q+ K+ I H R + G D IKL+
Sbjct: 157 KFLTASADKTIKLWQNDKV----IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDX 212
Query: 125 KNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH 184
+R T+ H V + L + ++ S DRT++IW + L+ +
Sbjct: 213 HTGDVLR-----TYEGHESFVYCIKLLPNGDIV-SCGEDRTVRIWSKEN-GSLKQVITLP 265
Query: 185 DDAINAVALSDDGDVYTGSADKKIKVWRR 213
+I +V +GD+ GS+D ++++ +
Sbjct: 266 AISIWSVDCXSNGDIIVGSSDNLVRIFSQ 294
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 271 ALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330
L GH ++ ++ +V SGS DKT ++W+ Y L+ H A+ D
Sbjct: 99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYN----LQAHN------ASVWDA 148
Query: 331 DRCDSSDTSYLVCSGSLDCDIKVWQ 355
S+ +L S D IK+WQ
Sbjct: 149 KVVSFSENKFLTASA--DKTIKLWQ 171
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 42/228 (18%)
Query: 106 TRLATLPTLGDRAIKLLMPKNHVQI-----RRHKTCTWVHHVDAVSALALTKDETLLYSV 160
TRLAT + DR++K+ +N QI R H+ W A A +L S
Sbjct: 26 TRLATCSS--DRSVKIFDVRNGGQILIADLRGHEGPVWQ------VAWAHPMYGNILASC 77
Query: 161 SWDRTIKIWRTSDFKCLESITNA-HDDAINAV--ALSDDGDVYT-GSADKKIKVWRRSPG 216
S+DR + IWR + +S +A HD ++N+V A D G + GS+D I + + G
Sbjct: 78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT-G 136
Query: 217 NKKHSLVDVLERHNSGINALALS---CDGSVL--------------YSGACDRSIIVWEK 259
+ + + H G NA++ + GS++ SG CD I +W K
Sbjct: 137 EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW-K 195
Query: 260 EEDDGNILVVGALRGHTKSI------LCMAVVSDLVCSGSADKTIRIW 301
EE+DG L H+ + + + + + S S D + IW
Sbjct: 196 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 22/187 (11%)
Query: 128 VQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD----FKCLESITNA 183
V++ H T H V L D L S D + +W ++ + L++ T
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ- 274
Query: 184 HDDAINAVAL----SDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
H A+ AVA S+ G++D+ I++W G + + ++ H S + ++ S
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG----ACLSAVDAH-SQVCSILWS 329
Query: 240 CDGSVLYSG--ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSAD 295
L SG +++W+ + V L+GHT +L + + D V S +AD
Sbjct: 330 PHYKELISGHGFAQNQLVIWKYP----TMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 385
Query: 296 KTIRIWR 302
+T+R+WR
Sbjct: 386 ETLRLWR 392
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 114/275 (41%), Gaps = 40/275 (14%)
Query: 12 LTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG 69
L ++ Y+SS+A G +L G+S EV+ WD Q+ L N + G
Sbjct: 140 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ------QQKRLRNMTSHSARVG 193
Query: 70 AVK-SLVVLADKLFSAH--------QDHKIRVWKINNQE-------PDHQKYTRLATLPT 113
++ + +L+ S H +H + ++QE PD + L +
Sbjct: 194 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH------LAS 247
Query: 114 LGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV---SWDRTIKIWR 170
G+ + + P + T+ H AV A+A ++ + + + DR I+IW
Sbjct: 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307
Query: 171 TSDFKCLESITNAHDDAINAVALSDDGDVYTGS--ADKKIKVWRRSPGNKKHSLVDVLER 228
CL ++ +AH + + ++ +G A ++ +W+ K V L+
Sbjct: 308 VCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK----VAELKG 362
Query: 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263
H S + +L +S DG+ + S A D ++ +W E D
Sbjct: 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM 282
V L H+ + L + DG L SG D + VW +G + + H ++ +
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 283 AVV---SDLVCS--GSADKTIRIWRGIDRNYTCLAVLEGH 317
A S+++ + G++D+ IRIW + CL+ ++ H
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVC--SGACLSAVDAH 320
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 22/187 (11%)
Query: 128 VQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD----FKCLESITNA 183
V++ H T H V L D L S D + +W ++ + L++ T
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ- 285
Query: 184 HDDAINAVAL----SDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
H A+ AVA S+ G++D+ I++W G + + ++ H S + ++ S
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG----ACLSAVDAH-SQVCSILWS 340
Query: 240 CDGSVLYSG--ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSAD 295
L SG +++W+ + V L+GHT +L + + D V S +AD
Sbjct: 341 PHYKELISGHGFAQNQLVIWKYP----TMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 396
Query: 296 KTIRIWR 302
+T+R+WR
Sbjct: 397 ETLRLWR 403
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 114/275 (41%), Gaps = 40/275 (14%)
Query: 12 LTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG 69
L ++ Y+SS+A G +L G+S EV+ WD Q+ L N + G
Sbjct: 151 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ------QQKRLRNMTSHSARVG 204
Query: 70 AVK-SLVVLADKLFSAH--------QDHKIRVWKINNQE-------PDHQKYTRLATLPT 113
++ + +L+ S H +H + ++QE PD + L +
Sbjct: 205 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH------LAS 258
Query: 114 LGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV---SWDRTIKIWR 170
G+ + + P + T+ H AV A+A ++ + + + DR I+IW
Sbjct: 259 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 318
Query: 171 TSDFKCLESITNAHDDAINAVALSDDGDVYTGS--ADKKIKVWRRSPGNKKHSLVDVLER 228
CL ++ +AH + + ++ +G A ++ +W+ K V L+
Sbjct: 319 VCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK----VAELKG 373
Query: 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263
H S + +L +S DG+ + S A D ++ +W E D
Sbjct: 374 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 408
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM 282
V L H+ + L + DG L SG D + VW +G + + H ++ +
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 283 AVV---SDLVCS--GSADKTIRIWRGIDRNYTCLAVLEGH 317
A S+++ + G++D+ IRIW + CL+ ++ H
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVC--SGACLSAVDAH 331
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 22/187 (11%)
Query: 128 VQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD----FKCLESITNA 183
V++ H T H V L D L S D + +W ++ + L++ T
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ- 194
Query: 184 HDDAINAVAL----SDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239
H A+ AVA S+ G++D+ I++W G + + ++ H S + ++ S
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG----ACLSAVDAH-SQVCSILWS 249
Query: 240 CDGSVLYSG--ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSAD 295
L SG +++W+ + V L+GHT +L + + D V S +AD
Sbjct: 250 PHYKELISGHGFAQNQLVIWKYP----TMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 305
Query: 296 KTIRIWR 302
+T+R+WR
Sbjct: 306 ETLRLWR 312
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 112/269 (41%), Gaps = 28/269 (10%)
Query: 12 LTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSN--NNIVAVG 67
L ++ Y+SS+A G +L G+S EV+ WD Q+ L N ++ VG
Sbjct: 60 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ------QQKRLRNMTSHSARVG 113
Query: 68 KGAVKSLVVLADKLFSAHQDHKIRVWK--INNQEPDHQKYTRLATLP------TLGDRAI 119
+ S ++ + H +RV + + Q+ L P + G+ +
Sbjct: 114 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 173
Query: 120 KLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV---SWDRTIKIWRTSDFKC 176
+ P + T+ H AV A+A ++ + + + DR I+IW C
Sbjct: 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233
Query: 177 LESITNAHDDAINAVALSDDGDVYTGS--ADKKIKVWRRSPGNKKHSLVDVLERHNSGIN 234
L ++ +AH + + ++ +G A ++ +W+ K V L+ H S +
Sbjct: 234 LSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK----VAELKGHTSRVL 288
Query: 235 ALALSCDGSVLYSGACDRSIIVWEKEEDD 263
+L +S DG+ + S A D ++ +W E D
Sbjct: 289 SLTMSPDGATVASAAADETLRLWRCFELD 317
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM 282
V L H+ + L + DG L SG D + VW +G + + H ++ +
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 283 AVV---SDLVCS--GSADKTIRIWRGIDRNYTCLAVLEGH 317
A S+++ + G++D+ IRIW CL+ ++ H
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSAVDAH 240
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 23/174 (13%)
Query: 154 ETLLYSVSWDRTIKIW--RTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIK 209
E+L SV+ D+ + IW R ++ +AH +N ++ + + + TGSADK +
Sbjct: 246 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 210 VWR-RSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWE--------- 258
+W R+ K HS E H I + S + ++L S DR + VW+
Sbjct: 306 LWDLRNLKLKLHSF----ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 361
Query: 259 -KEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNY 308
++ +DG ++ GHT I + + ++CS S D +++W+ + Y
Sbjct: 362 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 415
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 196 DGDVYTGSADKKIKVWRRSPGNKKHSLVD---VLERHNSGINALALSCDGSVLY-SGACD 251
+G + + S D I +W + K+H ++D + H + + +A L+ S A D
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 252 RSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLV-CSGSADKTIRIWRGIDRNY 308
+ +++W+ ++ + + HT + C++ S+ + +GSADKT+ +W RN
Sbjct: 256 QKLMIWDTRNNNTS-KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--RNL 312
Query: 309 TC-LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
L E H+ + + + N+ ++ S D + VW +S
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNET--------ILASSGTDRRLHVWDLS 354
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 20/165 (12%)
Query: 205 DKKIKVW--RRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEE 261
D+K+ +W R + +K VD H + +N L+ + +L +G+ D+++ +W
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDA---HTAEVNCLSFNPYSEFILATGSADKTVALW---- 307
Query: 262 DDGNI-LVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317
D N+ L + + H I + ++ S D+ + +W + + + +
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW-DLSKIGEEQSTEDAE 366
Query: 318 RGPVKCLA-----AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
GP + L A +D + + +++CS S D ++VWQ++
Sbjct: 367 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 411
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 22/167 (13%)
Query: 81 LFSAHQDHKIRVWKINNQEPDHQ----KYTRLATLPTLGDRAIKLLMPKNHVQI------ 130
L SA DH I +W IN +H+ K + D A LL +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 131 -----RRHKTCTWVHHVDA----VSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESI 180
R + T H VDA V+ L+ E +L + S D+T+ +W + K
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 181 TNAHDDAINAVALSDDGDVYTGSA--DKKIKVWRRSPGNKKHSLVDV 225
+H D I V S + S+ D+++ VW S ++ S D
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 365
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 32/196 (16%)
Query: 15 LKGHNSYVSSLA----LAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGA 70
L+GH L+ L G +L + S D+ + WD N E + NI
Sbjct: 179 LRGHQKEGYGLSWNPNLNG-YLLSASDDHTICLWDINATPKE--HRVIDAKNIFTGHTAV 235
Query: 71 VKSLV--VLADKLF-SAHQDHKIRVWKI---NNQEPDH--------------QKYTRLAT 110
V+ + +L + LF S D K+ +W N +P H Y+
Sbjct: 236 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 295
Query: 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDRTIKIW 169
D+ + L +N ++++ H ++ H D + + + +ET+L S DR + +W
Sbjct: 296 ATGSADKTVALWDLRN-LKLKLH---SFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Query: 170 RTSDFKCLESITNAHD 185
S +S +A D
Sbjct: 352 DLSKIGEEQSTEDAED 367
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 23/174 (13%)
Query: 154 ETLLYSVSWDRTIKIW--RTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIK 209
E+L SV+ D+ + IW R ++ +AH +N ++ + + + TGSADK +
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 210 VWR-RSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWE--------- 258
+W R+ K HS E H I + S + ++L S DR + VW+
Sbjct: 304 LWDLRNLKLKLHSF----ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359
Query: 259 -KEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNY 308
++ +DG ++ GHT I + + ++CS S D +++W+ + Y
Sbjct: 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 196 DGDVYTGSADKKIKVWRRSPGNKKHSLVD---VLERHNSGINALALSCDGSVLY-SGACD 251
+G + + S D I +W + K+H ++D + H + + +A L+ S A D
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 252 RSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLV-CSGSADKTIRIWRGIDRNY 308
+ +++W+ ++ + + HT + C++ S+ + +GSADKT+ +W RN
Sbjct: 254 QKLMIWDTRNNNTS-KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--RNL 310
Query: 309 TC-LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
L E H+ + + + N+ ++ S D + VW +S
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNET--------ILASSGTDRRLHVWDLS 352
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 20/165 (12%)
Query: 205 DKKIKVW--RRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEE 261
D+K+ +W R + +K VD H + +N L+ + +L +G+ D+++ +W
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDA---HTAEVNCLSFNPYSEFILATGSADKTVALW---- 305
Query: 262 DDGNI-LVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317
D N+ L + + H I + ++ S D+ + +W + + + +
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW-DLSKIGEEQSTEDAE 364
Query: 318 RGPVKCLA-----AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
GP + L A +D + + +++CS S D ++VWQ++
Sbjct: 365 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 22/167 (13%)
Query: 81 LFSAHQDHKIRVWKINNQEPDHQ----KYTRLATLPTLGDRAIKLLMPKNHVQI------ 130
L SA DH I +W IN +H+ K + D A LL +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 131 -----RRHKTCTWVHHVDA----VSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESI 180
R + T H VDA V+ L+ E +L + S D+T+ +W + K
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 181 TNAHDDAINAVALSDDGDVYTGSA--DKKIKVWRRSPGNKKHSLVDV 225
+H D I V S + S+ D+++ VW S ++ S D
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 32/196 (16%)
Query: 15 LKGHNSYVSSLA----LAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGA 70
L+GH L+ L G +L + S D+ + WD N E + NI
Sbjct: 177 LRGHQKEGYGLSWNPNLNG-YLLSASDDHTICLWDINATPKE--HRVIDAKNIFTGHTAV 233
Query: 71 VKSLV--VLADKLF-SAHQDHKIRVWKINNQ---EPDH--------------QKYTRLAT 110
V+ + +L + LF S D K+ +W N +P H Y+
Sbjct: 234 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293
Query: 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDRTIKIW 169
D+ + L +N ++++ H ++ H D + + + +ET+L S DR + +W
Sbjct: 294 ATGSADKTVALWDLRN-LKLKLH---SFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Query: 170 RTSDFKCLESITNAHD 185
S +S +A D
Sbjct: 350 DLSKIGEEQSTEDAED 365
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 23/174 (13%)
Query: 154 ETLLYSVSWDRTIKIW--RTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIK 209
E+L SV+ D+ + IW R ++ +AH +N ++ + + + TGSADK +
Sbjct: 248 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 210 VWR-RSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWE--------- 258
+W R+ K HS E H I + S + ++L S DR + VW+
Sbjct: 308 LWDLRNLKLKLHSF----ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 363
Query: 259 -KEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNY 308
++ +DG ++ GHT I + + ++CS S D +++W+ + Y
Sbjct: 364 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 417
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 196 DGDVYTGSADKKIKVWRRSPGNKKHSLVD---VLERHNSGINALALSCDGSVLY-SGACD 251
+G + + S D I +W + K+H ++D + H + + +A L+ S A D
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 252 RSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLV-CSGSADKTIRIW 301
+ +++W+ ++ + + HT + C++ S+ + +GSADKT+ +W
Sbjct: 258 QKLMIWDTRNNNTS-KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 20/165 (12%)
Query: 205 DKKIKVW--RRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEE 261
D+K+ +W R + +K VD H + +N L+ + +L +G+ D+++ +W
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDA---HTAEVNCLSFNPYSEFILATGSADKTVALW---- 309
Query: 262 DDGNI-LVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317
D N+ L + + H I + ++ S D+ + +W + + + +
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW-DLSKIGEEQSTEDAE 368
Query: 318 RGPVKCLA-----AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
GP + L A +D + + +++CS S D ++VWQ++
Sbjct: 369 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 22/167 (13%)
Query: 81 LFSAHQDHKIRVWKINNQEPDHQ----KYTRLATLPTLGDRAIKLLMPKNHVQI------ 130
L SA DH I +W IN +H+ K + D A LL +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 131 -----RRHKTCTWVHHVDA----VSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESI 180
R + T H VDA V+ L+ E +L + S D+T+ +W + K
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 320
Query: 181 TNAHDDAINAVALSDDGDVYTGSA--DKKIKVWRRSPGNKKHSLVDV 225
+H D I V S + S+ D+++ VW S ++ S D
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 32/196 (16%)
Query: 15 LKGHNSYVSSLA----LAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGA 70
L+GH L+ L G +L + S D+ + WD N E + NI
Sbjct: 181 LRGHQKEGYGLSWNPNLNG-YLLSASDDHTICLWDINATPKE--HRVIDAKNIFTGHTAV 237
Query: 71 VKSLV--VLADKLF-SAHQDHKIRVWKINNQ---EPDH--------------QKYTRLAT 110
V+ + +L + LF S D K+ +W N +P H Y+
Sbjct: 238 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 297
Query: 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDRTIKIW 169
D+ + L +N ++++ H ++ H D + + + +ET+L S DR + +W
Sbjct: 298 ATGSADKTVALWDLRN-LKLKLH---SFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Query: 170 RTSDFKCLESITNAHD 185
S +S +A D
Sbjct: 354 DLSKIGEEQSTEDAED 369
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 154 ETLLYSVSWDRTIKIW--RTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIK 209
E+L SV+ D+ + IW R++ + +AH +N ++ + + + TGSADK +
Sbjct: 242 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 301
Query: 210 VWR-RSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWE--------- 258
+W R+ K H+ E H I + S + ++L S DR + VW+
Sbjct: 302 LWDLRNLKLKLHTF----ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 259 -KEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNY 308
++ +DG ++ GHT I + + ++CS S D ++IW+ + Y
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIY 411
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 197 GDVYTGSADKKIKVWRRSPGNKKHSLVD---VLERHNSGINALALSCDGSVLY-SGACDR 252
G + + S D + +W + G K+ +VD + H++ + +A L+ S A D+
Sbjct: 193 GHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQ 252
Query: 253 SIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLV-CSGSADKTIRIWRGIDRNYT 309
+++W+ + + + HT + C++ S+ + +GSADKT+ +W RN
Sbjct: 253 KLMIWDTRSNTTS-KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--RNLK 309
Query: 310 C-LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
L E H+ + + + N+ ++ S D + VW +S
Sbjct: 310 LKLHTFESHKDEIFQVHWSPHNET--------ILASSGTDRRLNVWDLS 350
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 74/199 (37%), Gaps = 34/199 (17%)
Query: 180 ITNAHDDAINAVALSDDGD--VYTGSADKKIKVW--RRSPG----------NKKHSLVDV 225
I H I AV+ S D + T SAD ++K+W RR+ G K ++
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
Query: 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285
HN +N L + DG L + D + +W + ++ G + ++K L V
Sbjct: 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS 300
Query: 286 SD------LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTS 339
V GS ++ G + +L+GH V C C
Sbjct: 301 CGCSSEFVFVPYGSTIAVYTVYSGEQ-----ITMLKGHYKTVDC---------CVFQSNF 346
Query: 340 YLVCSGSLDCDIKVWQISF 358
+ SGS DC+I W S
Sbjct: 347 QELYSGSRDCNILAWVPSL 365
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 175 KCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233
+ +ES AH+ +N + + DG + T D ++++W S N +++LV+ + N+
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS--NGENTLVNYGKVCNNSK 292
Query: 234 NALALS----CDGSVLY--SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287
L + C ++ G+ V+ E+ + L+GH K++ C S+
Sbjct: 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ-------ITMLKGHYKTVDCCVFQSN 345
Query: 288 L--VCSGSADKTIRIW 301
+ SGS D I W
Sbjct: 346 FQELYSGSRDCNILAW 361
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 14/175 (8%)
Query: 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNK 218
S S D I++W + K ++SI DA D + TG+ K+ ++ G K
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156
Query: 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS 278
++S L+ I ++A S DG L SGA D I +++ G +L L GH
Sbjct: 157 EYS----LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT--GKLL--HTLEGHAMP 208
Query: 279 I--LCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLA-VLEGHRGPVKCLAAAIDN 330
I L + S L+ + S D I+I+ D + LA L GH V +A D+
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIY---DVQHANLAGTLSGHASWVLNVAFCPDD 260
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 87/231 (37%), Gaps = 58/231 (25%)
Query: 171 TSDFKCLESITNAHDDAINAVALS-----DDGDVYTGSADKKIKVWRRSPGNKKHSLVDV 225
T+ + L AHDDAI +VA + V TGS D +KVW+ +++ L
Sbjct: 18 TNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR--DERLDLQWS 75
Query: 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKE--------------------EDDGN 265
LE H G+ ++ +S + S + D I +W+ E D
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135
Query: 266 ILVVG------------------ALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305
L G +L K IL +A D + SG+ D I I+
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD--I 193
Query: 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
L LEGH P++ L + D S L+ + S D IK++ +
Sbjct: 194 ATGKLLHTLEGHAMPIRSLTFSPD---------SQLLVTASDDGYIKIYDV 235
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 23/174 (13%)
Query: 154 ETLLYSVSWDRTIKIW--RTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIK 209
E+L SV+ D+ + IW R+++ +AH +N ++ + + + TGSADK +
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 210 VWR-RSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWE--------- 258
+W R+ K HS E H I + S + ++L S DR + VW+
Sbjct: 300 LWDLRNLKLKLHSF----ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 355
Query: 259 -KEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNY 308
++ +DG ++ GHT I + + ++CS S D +++W+ + Y
Sbjct: 356 PEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 205 DKKIKVW-RRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEED 262
D+K+ +W RS K S ++ H + +N L+ + +L +G+ D+++ +W D
Sbjct: 249 DQKLMIWDTRSNNTSKPS--HSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW----D 302
Query: 263 DGNI-LVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318
N+ L + + H I + ++ S D+ + +W + + + +
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW-DLSKIGEEQSPEDAED 361
Query: 319 GPVKCLA-----AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
GP + L A +D + + +++CS S D ++VWQ++
Sbjct: 362 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMA 405
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 197 GDVYTGSADKKIKVWRRSPGNKKHSLVD---VLERHNSGINALALSCDGSVLY-SGACDR 252
G + + S D I +W S K+ +VD + H + + ++ L+ S A D+
Sbjct: 191 GHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQ 250
Query: 253 SIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLV-CSGSADKTIRIWRGIDRNYT 309
+++W+ ++ + ++ HT + C++ S+ + +GSADKT+ +W RN
Sbjct: 251 KLMIWDTRSNNTS-KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--RNLK 307
Query: 310 C-LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
L E H+ + + + N+ ++ S D + VW +S
Sbjct: 308 LKLHSFESHKDEIFQVQWSPHNET--------ILASSGTDRRLNVWDLS 348
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 23/174 (13%)
Query: 154 ETLLYSVSWDRTIKIW--RTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIK 209
E+L SV+ D+ + IW R++ + +AH +N ++ + + + TGSADK +
Sbjct: 242 ESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 301
Query: 210 VWR-RSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWE--------- 258
+W R+ K H+ E H I + S + ++L S DR + VW+
Sbjct: 302 LWDLRNLKLKLHTF----ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 259 -KEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNY 308
++ +DG ++ GHT I + + ++CS S D +IW+ + Y
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENIY 411
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 197 GDVYTGSADKKIKVWRRSPGNKKHSLVD---VLERHNSGINALALSCDGSVLY-SGACDR 252
G + + S D + +W + G K+ +VD + H++ + +A L+ S A D+
Sbjct: 193 GHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQ 252
Query: 253 SIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLV-CSGSADKTIRIWRGIDRNYT 309
+ +W+ + + + HT + C++ S+ + +GSADKT+ +W RN
Sbjct: 253 KLXIWDTRSNTTS-KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--RNLK 309
Query: 310 C-LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
L E H+ + + + N+ ++ S D + VW +S
Sbjct: 310 LKLHTFESHKDEIFQVHWSPHNET--------ILASSGTDRRLNVWDLS 350
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-DV 199
HV ++ L L S S D +KIW D ++ H + +A+ D G +V
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNV 196
Query: 200 YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238
+ S D I++W G H+ + E + G+N++AL
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTF-NRKENPHDGVNSIAL 234
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWE-KEEDDGNILVVGALRGHTKSILCM 282
++ + H S I L G L S + D + +W K+ + L+ GH ++ +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTDI 187
Query: 283 AVV--SDLVCSGSADKTIRIWR 302
A++ V S S D TIR+W
Sbjct: 188 AIIDRGRNVLSASLDGTIRLWE 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-DV 199
HV ++ L L S S D +KIW D ++ H + +A+ D G +V
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNV 193
Query: 200 YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238
+ S D I++W G H+ + E + G+N++AL
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTF-NRKENPHDGVNSIAL 231
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWE-KEEDDGNILVVGALRGHTKSILCM 282
++ + H S I L G L S + D + +W K+ + L+ GH ++ +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTDI 184
Query: 283 AVV--SDLVCSGSADKTIRIWR 302
A++ V S S D TIR+W
Sbjct: 185 AIIDRGRNVLSASLDGTIRLWE 206
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 177 LESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235
++ + HDD ++ V G V T S+D+ IKV++ L D H+S I A
Sbjct: 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVA 62
Query: 236 LALSCD--GSVLYSGACDRSIIVWEKEED 262
+ + G ++ S + D+++ +WE++ D
Sbjct: 63 IDWASPEYGRIIASASYDKTVKLWEEDPD 91
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD----LVCSGSADKTIRIWR 302
+ D+ I V++ ++D N + + R H SI+ + S ++ S S DKT+++W
Sbjct: 30 SSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 177 LESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235
++ + HDD ++ V G V T S+D+ IKV++ L D H+S I A
Sbjct: 1 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVA 60
Query: 236 LALSCD--GSVLYSGACDRSIIVWEKEED 262
+ + G ++ S + D+++ +WE++ D
Sbjct: 61 IDWASPEYGRIIASASYDKTVKLWEEDPD 89
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD----LVCSGSADKTIRIWR 302
+ D+ I V++ ++D N + + R H SI+ + S ++ S S DKT+++W
Sbjct: 28 SSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 85
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 180 ITNAHDDAINAVA-----LSDDGD---------VYTGSADKKIKVWRRSPGNKKHSLVDV 225
I +AH +N+ + + +DG+ TG AD +K+W+ + + + L
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 226 LERHNSGINALALSCD---GSVLYSGACDRSIIVWEKEEDDG 264
LE H+ + +A S S L S + DR+ I+W ++ + G
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 33/220 (15%)
Query: 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTC-TWVHHVDAVSAL--ALTKDETLLYSVSWD 163
RLAT + D+ IK+ V+ HK T H V + A K T+L S S+D
Sbjct: 23 RLATCSS--DKTIKIF----EVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 164 RTIKIWRTSDFKCLESITNA-HDDAINAV--ALSDDGDVY-TGSADKKIKVWRRSPGNKK 219
+ IW+ + + + +A H ++N+V A + G + S+D K+ V
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 136
Query: 220 HSLVDVLERHNSGINALA-----LSCDGS--------VLYSGACDRSIIVWEKEEDDGNI 266
++ ++ H G+N+ + + DG +G D + +W+ D
Sbjct: 137 SPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 267 LVVGALRGHTKSILCMA-----VVSDLVCSGSADKTIRIW 301
++ L GH+ + +A ++ + S S D+T IW
Sbjct: 195 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 187 AINAVALSDDGDV-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245
A A+A+S D V ++ +D I VW +LV + H G + + +S DG+ L
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDL----HNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 246 YSGACDRSIIVWEKEE 261
++G D ++ W+ E
Sbjct: 199 WTGGLDNTVRSWDLRE 214
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-DVYTG 202
A ALA++ D + +S D I +W + + L H D + + +S+DG ++TG
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 203 SADKKIKVWRRSPGNK 218
D ++ W G +
Sbjct: 202 GLDNTVRSWDLREGRQ 217
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 3 NLSVVDHHCLT---TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWD 45
N++V D H T +GH S + ++ G L+TG DN VRSWD
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 180 ITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV-------------- 225
NAH IN+++++ D + Y + D +I +W ++ ++VD+
Sbjct: 172 FANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA 231
Query: 226 LERHNSGINALALSCDGSVLY------SGACDRSIIVWEKEEDDGN 265
E H + N S + S CDR ++E+ ED N
Sbjct: 232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN 277
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 180 ITNAHDDAINAVA-----LSDDGD---------VYTGSADKKIKVWRRSPGNKKHSLVDV 225
I +AH +N+ + + +DG+ TG AD +K+W+ + + + L
Sbjct: 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 201
Query: 226 LERHNSGINALALSCD---GSVLYSGACDRSIIVWEKEEDDG 264
LE H+ + +A S S L S + DR+ I+W ++ + G
Sbjct: 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 180 ITNAHDDAINAVA-----LSDDGD---------VYTGSADKKIKVWRRSPGNKKHSLVDV 225
I +AH +N+ + + +DG+ TG AD +K+W+ + + + L
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 226 LERHNSGINALALSCD---GSVLYSGACDRSIIVWEKEEDDG 264
LE H+ + +A S S L S + DR+ I+W ++ + G
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 178 ESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236
+ + HDD ++ V G V T S+D+ IKV++ L D H+S I A+
Sbjct: 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 63
Query: 237 ALSCD--GSVLYSGACDRSIIVWEKEED 262
+ G ++ S + D+++ +WE++ D
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWEEDPD 91
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD----LVCSGSADKTIRIWR 302
+ D+ I V++ ++D N + + R H SI+ + S ++ S S DKT+++W
Sbjct: 30 SSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 180 ITNAHDDAINAVA-----LSDDGD---------VYTGSADKKIKVWRRSPGNKKHSLVDV 225
I +AH +N+ + + +DG+ TG AD +K+W+ + + + L
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 226 LERHNSGINALALSCD---GSVLYSGACDRSIIVWEKEEDDG 264
LE H+ + +A S S + S + DR+ I+W ++ + G
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 180 ITNAHDDAINAVALSDD----GDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235
+T++ DD+I ++ S + GS ++ W + ++ + H +
Sbjct: 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQ--DSGQTIPKAQQMHTGPVLD 91
Query: 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI-LCMAVVSDLVCSGSA 294
+ S DGS +++ +CD++ +W+ + + + K+I A V +GS
Sbjct: 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149
Query: 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328
DKT++ W R+ + VL+ P +C A +
Sbjct: 150 DKTLKFWD--TRSSNPMMVLQ---LPERCYCADV 178
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDA----INAVALSDD 196
H V + + D + +++ S D+T K+W D ++I A DA I+ + +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMW---DLSSNQAIQIAQHDAPVKTIHWIKAPNY 141
Query: 197 GDVYTGSADKKIKVW 211
V TGS DK +K W
Sbjct: 142 SCVMTGSWDKTLKFW 156
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 34/194 (17%)
Query: 1 QHNLSVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFL 58
H++ + +H + TL+GH+S V LA G L +G +DN V+ WD S + +
Sbjct: 200 HHDVRIANHQ-IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR---SSIPKFTK 255
Query: 59 SNNNIVAVGKGAVKSLV-------VLADKLFSAHQDHKIRVW------KINNQEPDHQKY 105
+N+N AVK++ +LA D +I W ++N + Q
Sbjct: 256 TNHN------AAVKAVAWCPWQSNLLATG--GGTMDKQIHFWNAATGARVNTVDAGSQ-V 306
Query: 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA------VSALALTKDETLLYS 159
T L P + P N++ I + + VD V AL+ D +L +
Sbjct: 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILST 366
Query: 160 VSWDRTIKIWRTSD 173
+ D +K WR D
Sbjct: 367 AASDENLKFWRVYD 380
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 180 ITNAHDDAINAVA-----LSDDGD---------VYTGSADKKIKVWRRSPGNKKHSLVDV 225
I +AH +N+ + + +DG+ TG AD +K+W+ + + + L
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 226 LERHNSGINALALSCD---GSVLYSGACDRSIIVWEKEEDDG 264
LE H+ + +A S S S + DR+ I+W ++ + G
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQG 241
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN---AVALSDDGDVYTGSADKKIK 209
D +V D TI++W + KC++ T N V + +G + + S D +
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 322
Query: 210 VWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKE---EDDGNI 266
+ ++ + HN GI AL ++ L SG+ D I+ W +D N+
Sbjct: 323 FYELG----HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNL 374
Query: 267 LV 268
+V
Sbjct: 375 IV 376
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 20/164 (12%)
Query: 60 NNNIVAVG--KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDR 117
+ N VAVG +G + L+D S +R +P + + T GD
Sbjct: 455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA------KPSYISISPSETYIAAGDV 508
Query: 118 AIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK----------DETLLYSVSWDRTIK 167
K+L+ +Q R KT W ++A++ +E L+ + S D I
Sbjct: 509 MGKILL--YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566
Query: 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVW 211
I+ + NAH D +N + + + AD IK W
Sbjct: 567 IYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRW 610
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 48/218 (22%)
Query: 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL-TKDETLLYSVSWDRTIKIW 169
L G R I ++ +Q +H +V H +A++ L +D LL SVS D +++W
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKH----YVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 170 --RTSDFKCLESITNAHDDAINAVALSDDGD-----VYTGSADKKIKVWRRSPGNKKHSL 222
+T + H D + LS D D + + D +K+WR + +++
Sbjct: 143 NIQTDTLVAIFGGVEGHRDEV----LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Query: 223 VDVLERHNSGINALALSCD----------------------GSVLYSGACDRSIIVWE-- 258
+ + + + N +S G ++ S +C+ +I+ W+
Sbjct: 199 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPG 258
Query: 259 KEEDD--------GNILVVGALRGHTKSILCMAVVSDL 288
K EDD N+ ++G I M +D
Sbjct: 259 KMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSTDF 296
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 4 LSVVDHHCLTTLKGHNSYVSSLALAGK---FLYTGSSDNEVRSWDCNTFSSELDQEFLSN 60
++ + C+ GH + ++ L + L + S D+ +R W+ T
Sbjct: 99 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT------------ 146
Query: 61 NNIVAVGKGA--------VKSLVVLADKLFSAHQDHKIRVWKINNQ 98
+ +VA+ G +L +K+ S DH +++W+IN++
Sbjct: 147 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 192
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 40/185 (21%)
Query: 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL-TKDETLLYSVSWDRTIKIW 169
L G R I ++ +Q +H +V H +A++ L +D LL SVS D +++W
Sbjct: 87 LAVAGSRGIIRIINPITMQCIKH----YVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 170 --RTSDFKCLESITNAHDDAINAVALSDDGD-----VYTGSADKKIKVWRRSPGNKKHSL 222
+T + H D + LS D D + + D +K+WR + +++
Sbjct: 143 NIQTDTLVAIFGGVEGHRDEV----LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Query: 223 VDVLERHNSGINALALSCD----------------------GSVLYSGACDRSIIVWE-- 258
+ + + + N +S G ++ S +C+ +I+ W+
Sbjct: 199 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPG 258
Query: 259 KEEDD 263
K EDD
Sbjct: 259 KMEDD 263
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 4 LSVVDHHCLTTLKGHNSYVSSLALAGK---FLYTGSSDNEVRSWDCNTFSSELDQEFLSN 60
++ + C+ GH + ++ L + L + S D+ +R W+ T
Sbjct: 99 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT------------ 146
Query: 61 NNIVAVGKGA--------VKSLVVLADKLFSAHQDHKIRVWKINNQ 98
+ +VA+ G +L +K+ S DH +++W+IN++
Sbjct: 147 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 192
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 40/185 (21%)
Query: 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL-TKDETLLYSVSWDRTIKIW 169
L G R I ++ +Q +H +V H +A++ L +D LL SVS D +++W
Sbjct: 124 LAVAGSRGIIRIINPITMQCIKH----YVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 179
Query: 170 --RTSDFKCLESITNAHDDAINAVALSDDGD-----VYTGSADKKIKVWRRSPGNKKHSL 222
+T + H D + LS D D + + D +K+WR + +++
Sbjct: 180 NIQTDTLVAIFGGVEGHRDEV----LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 235
Query: 223 VDVLERHNSGINALALSCD----------------------GSVLYSGACDRSIIVWE-- 258
+ + + + N +S G ++ S +C+ +I+ W+
Sbjct: 236 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPG 295
Query: 259 KEEDD 263
K EDD
Sbjct: 296 KMEDD 300
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 4 LSVVDHHCLTTLKGHNSYVSSLALAGK---FLYTGSSDNEVRSWDCNTFSSELDQEFLSN 60
++ + C+ GH + ++ L + L + S D+ +R W+ T
Sbjct: 136 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT------------ 183
Query: 61 NNIVAVGKGA--------VKSLVVLADKLFSAHQDHKIRVWKINNQ 98
+ +VA+ G +L +K+ S DH +++W+IN++
Sbjct: 184 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 229
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 40/185 (21%)
Query: 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL-TKDETLLYSVSWDRTIKIW 169
L G R I ++ +Q +H +V H +A++ L +D LL SVS D +++W
Sbjct: 88 LAVAGSRGIIRIINPITMQCIKH----YVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143
Query: 170 --RTSDFKCLESITNAHDDAINAVALSDDGD-----VYTGSADKKIKVWRRSPGNKKHSL 222
+T + H D + LS D D + + D +K+WR + +++
Sbjct: 144 NIQTDTLVAIFGGVEGHRDEV----LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199
Query: 223 VDVLERHNSGINALALSCD----------------------GSVLYSGACDRSIIVWE-- 258
+ + + + N +S G ++ S +C+ +I+ W+
Sbjct: 200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPG 259
Query: 259 KEEDD 263
K EDD
Sbjct: 260 KMEDD 264
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 4 LSVVDHHCLTTLKGHNSYVSSLALAGK---FLYTGSSDNEVRSWDCNTFSSELDQEFLSN 60
++ + C+ GH + ++ L + L + S D+ +R W+ T
Sbjct: 100 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT------------ 147
Query: 61 NNIVAVGKGA--------VKSLVVLADKLFSAHQDHKIRVWKINNQ 98
+ +VA+ G +L +K+ S DH +++W+IN++
Sbjct: 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 193
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 40/185 (21%)
Query: 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL-TKDETLLYSVSWDRTIKIW 169
L G R I ++ +Q +H +V H +A++ L +D LL SVS D +++W
Sbjct: 83 LAVAGSRGIIRIINPITMQCIKH----YVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 138
Query: 170 --RTSDFKCLESITNAHDDAINAVALSDDGD-----VYTGSADKKIKVWRRSPGNKKHSL 222
+T + H D + LS D D + + D +K+WR + +++
Sbjct: 139 NIQTDTLVAIFGGVEGHRDEV----LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 194
Query: 223 VDVLERHNSGINALALSCD----------------------GSVLYSGACDRSIIVWE-- 258
+ + + + N +S G ++ S +C+ +I+ W+
Sbjct: 195 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPG 254
Query: 259 KEEDD 263
K EDD
Sbjct: 255 KMEDD 259
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 4 LSVVDHHCLTTLKGHNSYVSSLALAGK---FLYTGSSDNEVRSWDCNTFSSELDQEFLSN 60
++ + C+ GH + ++ L + L + S D+ +R W+ T
Sbjct: 95 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT------------ 142
Query: 61 NNIVAVGKGA--------VKSLVVLADKLFSAHQDHKIRVWKINNQ 98
+ +VA+ G +L +K+ S DH +++W+IN++
Sbjct: 143 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 188
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 20/164 (12%)
Query: 60 NNNIVAVG--KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDR 117
+ N VAVG +G + L+D S +R +P + + T GD
Sbjct: 455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA------KPSYISISPSETYIAAGDV 508
Query: 118 AIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK----------DETLLYSVSWDRTIK 167
K+L+ +Q R KT W ++A++ +E L+ + S D I
Sbjct: 509 XGKILL--YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566
Query: 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVW 211
I+ + NAH D +N + + + AD IK W
Sbjct: 567 IYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRW 610
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN---AVALSDDGDVYTGSADKKIK 209
D +V D TI++W + KC++ T N V + +G + + S D +
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 322
Query: 210 VWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW---EKEEDDGNI 266
+ ++ + HN GI AL ++ L SG+ D I W +D N+
Sbjct: 323 FYELG----HDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSXHQDHSNL 374
Query: 267 LV 268
+V
Sbjct: 375 IV 376
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
+D+N + ++ GH PV +A ND ++ SGS DC + VW+I
Sbjct: 70 VDKN---VPLVXGHTAPVLDIAWXPHNDN--------VIASGSEDCTVMVWEIP 112
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 195 DDGDVYTGSADKKIKVWRRSPGNKKHSL---VDVLERHNSGINALAL-SCDGSVLYSGAC 250
+D + +GS D + VW G L V LE H + +A +VL S C
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152
Query: 251 DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRI 300
D I+VW+ G ++ H +I + D L+C+ DK +R+
Sbjct: 153 DNVILVWDV--GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDV 199
H D V L++ D T S D ++K+W S L+S NAH +N VA D
Sbjct: 137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDT 195
Query: 200 YTGS--ADKKIKVW-RRSP 215
S D +I +W R P
Sbjct: 196 IFLSCGEDGRILLWDTRKP 214
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 272 LRGHTKSILCMAV--VSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329
L GH + + + DL+ S S D + +W + N L L+GH G + +ID
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL--NGERLGTLDGHTGTI----WSID 81
Query: 330 NDRCDSSDTSYLVCSGSLDCDIKVWQIS 357
D C T Y V +GS D IK+W +S
Sbjct: 82 VD-CF---TKYCV-TGSADYSIKLWDVS 104
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 127 HVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD 186
+ Q K H ++ + K+ LL+S S D + +W + + + L ++ D
Sbjct: 17 YFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-----D 71
Query: 187 AINAVALSDDGDVYT-----GSADKKIKVWRRSPGN 217
S D D +T GSAD IK+W S G
Sbjct: 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 74/227 (32%)
Query: 186 DAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244
+ + +A S DG+ + TG + ++++W NK +L++VL H + I ++ + DG+
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLW-----NKTGALLNVLNFHRAPIVSVKWNKDGTH 163
Query: 245 LYSGACDRSIIVW-----------------------EKEEDDGNILV------------- 268
+ S + I+W E DG++ V
Sbjct: 164 IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP 223
Query: 269 ----------------VGALRGH--TKSILCMAVVSDLVCSGSADKTIRIWRGIDRN-YT 309
G L GH S+L + L+ S S D T+RIW G + N
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356
C GH + A+ + +D+ V S S+D +++W +
Sbjct: 284 CFY---GHSQSI-VSASWVGDDK---------VISCSMDGSVRLWSL 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,222,211
Number of Sequences: 62578
Number of extensions: 441474
Number of successful extensions: 1902
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 428
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)