Query 044557
Match_columns 362
No_of_seqs 234 out of 1755
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:26:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.1E-47 8.9E-52 317.7 26.9 291 7-355 103-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-45 3.9E-50 311.4 20.2 276 17-355 173-458 (459)
3 KOG0279 G protein beta subunit 100.0 2.4E-39 5.2E-44 260.9 30.6 290 10-357 6-313 (315)
4 KOG0315 G-protein beta subunit 100.0 5.4E-39 1.2E-43 255.0 28.1 274 29-358 10-289 (311)
5 KOG0286 G-protein beta subunit 100.0 2.2E-38 4.9E-43 256.9 31.0 291 9-355 45-343 (343)
6 KOG0645 WD40 repeat protein [G 100.0 2.2E-37 4.7E-42 248.7 30.0 292 11-357 6-311 (312)
7 KOG0281 Beta-TrCP (transducin 100.0 2.1E-39 4.5E-44 268.7 14.8 273 18-357 196-477 (499)
8 KOG0271 Notchless-like WD40 re 100.0 3.3E-38 7.2E-43 264.4 20.6 246 63-358 110-440 (480)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-38 2.7E-43 270.0 18.2 246 5-302 203-458 (459)
10 KOG0313 Microtubule binding pr 100.0 2.1E-36 4.5E-41 253.4 26.3 285 18-360 104-421 (423)
11 KOG0291 WD40-repeat-containing 100.0 2.9E-35 6.3E-40 265.6 33.3 326 5-357 131-508 (893)
12 KOG0319 WD40-repeat-containing 100.0 4.2E-36 9.1E-41 270.5 26.7 322 11-358 184-578 (775)
13 KOG0285 Pleiotropic regulator 100.0 1.1E-35 2.4E-40 247.3 23.9 288 7-356 139-438 (460)
14 KOG0263 Transcription initiati 100.0 7.6E-36 1.7E-40 271.2 23.9 204 137-360 446-652 (707)
15 KOG0319 WD40-repeat-containing 100.0 2.5E-35 5.3E-40 265.6 24.5 289 8-355 312-617 (775)
16 KOG0273 Beta-transducin family 100.0 9.3E-35 2E-39 249.6 25.4 289 13-357 173-482 (524)
17 KOG0293 WD40 repeat-containing 100.0 8E-35 1.7E-39 246.3 22.5 292 8-359 213-515 (519)
18 KOG0284 Polyadenylation factor 100.0 1.1E-35 2.3E-40 251.2 17.1 279 19-359 96-382 (464)
19 KOG0281 Beta-TrCP (transducin 100.0 2.3E-36 5E-41 250.7 12.9 232 68-357 197-428 (499)
20 KOG0295 WD40 repeat-containing 100.0 3.3E-34 7.1E-39 239.0 24.3 285 10-356 99-405 (406)
21 KOG0645 WD40 repeat protein [G 100.0 8.7E-34 1.9E-38 228.0 25.1 207 138-356 10-224 (312)
22 KOG0318 WD40 repeat stress pro 100.0 9.1E-33 2E-37 240.4 32.6 331 14-361 54-564 (603)
23 KOG0318 WD40 repeat stress pro 100.0 1.4E-32 3.1E-37 239.2 32.1 329 5-357 176-602 (603)
24 KOG0265 U5 snRNP-specific prot 100.0 2.3E-33 4.9E-38 228.6 24.9 286 11-355 39-336 (338)
25 KOG0282 mRNA splicing factor [ 100.0 9.4E-35 2E-39 250.4 17.4 292 6-355 201-503 (503)
26 PLN00181 protein SPA1-RELATED; 100.0 4.1E-32 8.9E-37 268.9 37.7 292 14-356 478-792 (793)
27 KOG0266 WD40 repeat-containing 100.0 1.3E-32 2.7E-37 254.8 31.5 289 11-357 150-454 (456)
28 cd00200 WD40 WD40 domain, foun 100.0 1E-31 2.2E-36 234.1 35.3 281 12-355 2-289 (289)
29 KOG0295 WD40 repeat-containing 100.0 4.3E-34 9.4E-39 238.3 18.9 246 6-302 137-404 (406)
30 KOG0315 G-protein beta subunit 100.0 8.2E-32 1.8E-36 214.2 27.8 271 8-326 29-308 (311)
31 KOG0276 Vesicle coat complex C 100.0 1.4E-32 3.1E-37 243.6 25.3 278 12-352 6-294 (794)
32 KOG0279 G protein beta subunit 100.0 3.8E-32 8.1E-37 219.5 25.4 244 65-358 12-263 (315)
33 KOG0286 G-protein beta subunit 100.0 4E-32 8.7E-37 220.6 25.5 240 19-302 97-343 (343)
34 KOG0316 Conserved WD40 repeat- 100.0 6.5E-32 1.4E-36 213.2 22.6 267 8-331 6-283 (307)
35 KOG0291 WD40-repeat-containing 100.0 1.2E-30 2.6E-35 236.0 32.4 326 12-357 182-550 (893)
36 KOG0292 Vesicle coat complex C 100.0 8.6E-32 1.9E-36 247.0 24.9 287 13-357 3-321 (1202)
37 KOG0306 WD40-repeat-containing 100.0 4.8E-31 1E-35 238.3 29.3 324 8-356 138-621 (888)
38 KOG0306 WD40-repeat-containing 100.0 1.9E-31 4.1E-36 241.0 25.5 280 14-357 368-664 (888)
39 KOG0301 Phospholipase A2-activ 100.0 3.6E-31 7.8E-36 237.3 27.1 281 6-357 1-288 (745)
40 KOG0274 Cdc4 and related F-box 100.0 2.2E-31 4.7E-36 246.4 26.4 280 12-358 200-483 (537)
41 KOG0263 Transcription initiati 100.0 8.5E-32 1.8E-36 244.9 23.2 204 11-262 443-651 (707)
42 KOG0292 Vesicle coat complex C 100.0 1.3E-31 2.8E-36 245.8 20.5 243 70-360 11-283 (1202)
43 KOG0276 Vesicle coat complex C 100.0 3.4E-31 7.5E-36 234.9 22.1 237 68-357 13-257 (794)
44 KOG0273 Beta-transducin family 100.0 6.3E-30 1.4E-34 220.0 28.8 273 19-357 235-523 (524)
45 KOG0296 Angio-associated migra 100.0 7.7E-30 1.7E-34 213.1 27.5 289 9-357 54-398 (399)
46 KOG0285 Pleiotropic regulator 100.0 9E-31 2E-35 218.2 20.2 241 61-357 144-389 (460)
47 KOG0313 Microtubule binding pr 100.0 2.9E-30 6.3E-35 216.6 22.6 274 9-303 134-417 (423)
48 KOG0294 WD40 repeat-containing 100.0 1.7E-29 3.6E-34 207.4 23.4 246 10-359 34-283 (362)
49 KOG0283 WD40 repeat-containing 100.0 1.5E-29 3.3E-34 232.1 24.2 306 10-359 257-578 (712)
50 KOG0274 Cdc4 and related F-box 100.0 2.7E-29 5.9E-34 232.4 25.7 253 5-314 234-490 (537)
51 KOG0266 WD40 repeat-containing 100.0 9.4E-29 2E-33 229.0 27.7 243 68-357 159-409 (456)
52 KOG0284 Polyadenylation factor 100.0 5.6E-30 1.2E-34 216.7 15.5 237 15-302 134-378 (464)
53 KOG0277 Peroxisomal targeting 100.0 2.8E-29 6.2E-34 200.3 18.1 238 69-356 61-308 (311)
54 PLN00181 protein SPA1-RELATED; 100.0 1E-27 2.2E-32 237.6 32.1 273 38-359 457-740 (793)
55 KOG0278 Serine/threonine kinas 100.0 2.5E-29 5.5E-34 200.2 15.9 280 12-357 7-297 (334)
56 KOG0268 Sof1-like rRNA process 100.0 6.3E-29 1.4E-33 207.5 16.2 275 8-303 55-344 (433)
57 KOG0265 U5 snRNP-specific prot 100.0 7.8E-28 1.7E-32 196.4 22.0 246 65-358 44-297 (338)
58 KOG0772 Uncharacterized conser 100.0 1.3E-27 2.7E-32 208.0 23.6 309 8-355 156-485 (641)
59 KOG0278 Serine/threonine kinas 100.0 1E-28 2.2E-33 196.8 14.8 240 10-303 50-296 (334)
60 KOG0282 mRNA splicing factor [ 100.0 1E-28 2.2E-33 213.3 15.2 245 8-302 247-503 (503)
61 KOG0299 U3 snoRNP-associated p 100.0 2.3E-27 5E-32 203.8 23.0 261 64-359 138-412 (479)
62 KOG0300 WD40 repeat-containing 100.0 3.7E-27 7.9E-32 194.0 22.8 330 7-362 136-481 (481)
63 KOG0316 Conserved WD40 repeat- 100.0 4.6E-27 1E-31 185.8 21.9 241 63-357 12-257 (307)
64 KOG2445 Nuclear pore complex c 100.0 3.7E-26 8E-31 187.3 27.3 254 16-359 10-320 (361)
65 KOG0277 Peroxisomal targeting 100.0 1.1E-27 2.3E-32 191.4 16.9 234 19-302 60-307 (311)
66 KOG1332 Vesicle coat complex C 100.0 2.9E-27 6.3E-32 187.9 19.1 239 75-357 20-286 (299)
67 PTZ00420 coronin; Provisional 100.0 6.1E-26 1.3E-30 210.9 30.9 200 138-357 70-293 (568)
68 KOG0288 WD40 repeat protein Ti 100.0 6.9E-28 1.5E-32 204.4 15.2 285 7-355 163-459 (459)
69 KOG1332 Vesicle coat complex C 100.0 2.9E-27 6.2E-32 187.9 17.5 246 16-303 8-285 (299)
70 KOG0296 Angio-associated migra 100.0 3.4E-26 7.4E-31 191.4 23.1 242 9-303 96-397 (399)
71 KOG0264 Nucleosome remodeling 100.0 1.4E-26 3.1E-31 198.8 20.9 255 17-303 122-403 (422)
72 KOG0643 Translation initiation 100.0 2.3E-25 5.1E-30 179.3 26.3 279 15-357 6-317 (327)
73 cd00200 WD40 WD40 domain, foun 100.0 3.6E-25 7.7E-30 192.7 29.8 238 66-357 7-249 (289)
74 KOG0275 Conserved WD40 repeat- 100.0 2.7E-27 5.8E-32 195.4 15.1 295 8-355 201-507 (508)
75 PTZ00421 coronin; Provisional 100.0 1.9E-25 4.1E-30 206.6 29.1 202 138-358 71-291 (493)
76 KOG0289 mRNA splicing factor [ 100.0 1.9E-25 4E-30 190.8 26.5 278 20-356 220-505 (506)
77 PTZ00420 coronin; Provisional 100.0 7.3E-25 1.6E-29 203.8 32.9 255 34-331 49-319 (568)
78 PTZ00421 coronin; Provisional 99.9 4.2E-25 9.1E-30 204.3 30.2 269 25-330 28-315 (493)
79 KOG0973 Histone transcription 99.9 8.4E-26 1.8E-30 212.7 25.8 311 14-357 7-355 (942)
80 KOG0308 Conserved WD40 repeat- 99.9 5.9E-27 1.3E-31 209.0 17.1 238 79-360 38-288 (735)
81 KOG0293 WD40 repeat-containing 99.9 4E-26 8.7E-31 193.8 20.5 243 9-303 259-512 (519)
82 KOG1407 WD40 repeat protein [F 99.9 3.3E-25 7.2E-30 177.9 23.8 263 13-330 14-284 (313)
83 KOG0640 mRNA cleavage stimulat 99.9 7.4E-26 1.6E-30 185.8 20.5 296 13-356 106-425 (430)
84 KOG0650 WD40 repeat nucleolar 99.9 1.9E-25 4.1E-30 197.7 24.4 323 4-354 385-732 (733)
85 KOG4283 Transcription-coupled 99.9 3.1E-25 6.8E-30 180.9 23.7 293 16-356 40-364 (397)
86 KOG0264 Nucleosome remodeling 99.9 1.4E-25 3E-30 192.7 22.5 242 79-357 138-404 (422)
87 KOG0305 Anaphase promoting com 99.9 1.8E-25 3.8E-30 200.3 23.7 266 27-357 185-461 (484)
88 KOG0643 Translation initiation 99.9 1.5E-25 3.2E-30 180.4 19.6 254 8-303 41-316 (327)
89 KOG0310 Conserved WD40 repeat- 99.9 6E-25 1.3E-29 190.3 24.5 269 19-353 26-305 (487)
90 KOG1408 WD40 repeat protein [F 99.9 7.6E-25 1.7E-29 197.5 25.2 310 24-358 329-714 (1080)
91 KOG2096 WD40 repeat protein [G 99.9 7.5E-25 1.6E-29 180.5 23.0 303 11-355 78-400 (420)
92 KOG1446 Histone H3 (Lys4) meth 99.9 1.4E-23 2.9E-28 173.2 30.0 284 10-356 5-302 (311)
93 KOG0308 Conserved WD40 repeat- 99.9 7.2E-26 1.6E-30 202.1 17.9 275 29-357 37-327 (735)
94 KOG0640 mRNA cleavage stimulat 99.9 1.3E-25 2.9E-30 184.3 16.5 210 133-357 103-335 (430)
95 KOG0289 mRNA splicing factor [ 99.9 1.2E-24 2.7E-29 185.8 22.9 246 7-302 249-504 (506)
96 KOG0647 mRNA export protein (c 99.9 3.4E-24 7.5E-29 175.4 23.7 265 16-331 24-306 (347)
97 KOG0301 Phospholipase A2-activ 99.9 4.5E-25 9.8E-30 198.4 19.7 237 63-357 9-249 (745)
98 KOG0299 U3 snoRNP-associated p 99.9 4.8E-24 1E-28 183.5 24.4 292 12-356 135-455 (479)
99 KOG1063 RNA polymerase II elon 99.9 5.9E-24 1.3E-28 191.2 25.8 341 9-357 181-699 (764)
100 KOG1036 Mitotic spindle checkp 99.9 9.5E-24 2.1E-28 173.3 24.7 260 19-330 13-286 (323)
101 KOG0641 WD40 repeat protein [G 99.9 1.5E-22 3.3E-27 159.5 29.3 309 4-357 18-349 (350)
102 KOG0305 Anaphase promoting com 99.9 3.6E-24 7.7E-29 191.9 22.8 236 18-305 216-462 (484)
103 KOG1539 WD repeat protein [Gen 99.9 9E-24 2E-28 193.6 25.2 332 11-358 106-607 (910)
104 KOG0310 Conserved WD40 repeat- 99.9 7.4E-24 1.6E-28 183.6 23.1 237 13-302 62-307 (487)
105 KOG1063 RNA polymerase II elon 99.9 1.8E-23 3.9E-28 188.1 24.7 330 11-357 46-437 (764)
106 KOG1408 WD40 repeat protein [F 99.9 2.6E-23 5.6E-28 187.8 25.4 271 72-357 264-626 (1080)
107 KOG2106 Uncharacterized conser 99.9 2.9E-22 6.3E-27 174.4 30.2 309 13-356 239-625 (626)
108 KOG0283 WD40 repeat-containing 99.9 3.6E-24 7.9E-29 196.9 19.3 200 137-356 261-531 (712)
109 KOG0300 WD40 repeat-containing 99.9 7.5E-24 1.6E-28 174.6 19.0 261 5-304 176-476 (481)
110 KOG0269 WD40 repeat-containing 99.9 8E-24 1.7E-28 192.6 21.0 230 76-352 98-335 (839)
111 KOG0275 Conserved WD40 repeat- 99.9 2.5E-24 5.4E-29 177.9 15.8 245 69-357 214-467 (508)
112 KOG0641 WD40 repeat protein [G 99.9 3.3E-22 7.1E-27 157.7 25.5 249 11-303 81-348 (350)
113 KOG0639 Transducin-like enhanc 99.9 3.2E-23 6.9E-28 180.3 21.1 282 17-358 417-705 (705)
114 KOG0270 WD40 repeat-containing 99.9 1.5E-23 3.2E-28 179.8 18.4 250 78-357 192-449 (463)
115 KOG0268 Sof1-like rRNA process 99.9 1.6E-23 3.4E-28 175.4 15.1 266 65-356 63-344 (433)
116 KOG0973 Histone transcription 99.9 1.6E-22 3.6E-27 190.7 22.7 256 69-357 14-312 (942)
117 KOG0646 WD40 repeat protein [G 99.9 2.8E-22 6E-27 173.0 22.2 201 142-357 81-307 (476)
118 KOG0647 mRNA export protein (c 99.9 6.8E-22 1.5E-26 162.0 21.9 241 68-360 27-284 (347)
119 KOG1036 Mitotic spindle checkp 99.9 1.9E-22 4.2E-27 165.7 18.7 195 142-357 13-262 (323)
120 KOG0288 WD40 repeat protein Ti 99.9 1.5E-22 3.2E-27 172.2 17.0 242 11-302 211-459 (459)
121 KOG2048 WD40 repeat protein [G 99.9 5.2E-21 1.1E-25 172.1 27.0 270 19-302 25-317 (691)
122 KOG1407 WD40 repeat protein [F 99.9 2.5E-22 5.3E-27 161.4 15.8 199 139-353 17-257 (313)
123 KOG1274 WD40 repeat protein [G 99.9 1E-20 2.2E-25 175.5 28.2 265 16-331 10-283 (933)
124 KOG0321 WD40 repeat-containing 99.9 7.9E-22 1.7E-26 176.2 19.8 281 30-357 65-391 (720)
125 KOG0269 WD40 repeat-containing 99.9 2.6E-22 5.7E-27 182.8 15.6 227 28-301 99-337 (839)
126 KOG1446 Histone H3 (Lys4) meth 99.9 5.7E-20 1.2E-24 151.9 27.8 239 68-358 14-263 (311)
127 KOG2096 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 161.3 17.6 206 137-358 81-309 (420)
128 KOG0267 Microtubule severing p 99.9 4.5E-23 9.8E-28 186.4 9.1 241 31-331 6-251 (825)
129 KOG0302 Ribosome Assembly prot 99.9 2E-21 4.2E-26 163.7 17.8 207 140-358 149-379 (440)
130 KOG0267 Microtubule severing p 99.9 6E-23 1.3E-27 185.6 9.3 198 140-357 26-226 (825)
131 KOG0302 Ribosome Assembly prot 99.9 7E-21 1.5E-25 160.4 20.0 252 15-302 147-436 (440)
132 KOG0772 Uncharacterized conser 99.9 2.1E-21 4.6E-26 169.5 17.1 212 137-358 162-395 (641)
133 KOG2445 Nuclear pore complex c 99.9 2.2E-20 4.8E-25 153.6 20.4 211 140-357 11-256 (361)
134 KOG4283 Transcription-coupled 99.9 8.1E-20 1.8E-24 149.5 23.3 263 61-358 36-335 (397)
135 KOG0646 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 163.2 18.7 219 68-328 81-329 (476)
136 KOG1539 WD repeat protein [Gen 99.9 1.5E-19 3.2E-24 166.3 26.2 193 143-356 449-647 (910)
137 KOG2106 Uncharacterized conser 99.9 5.1E-19 1.1E-23 154.4 27.7 320 12-355 97-519 (626)
138 KOG4328 WD40 protein [Function 99.9 1E-19 2.2E-24 156.9 22.9 299 3-356 170-494 (498)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-18 3.9E-23 152.7 31.4 261 30-358 2-280 (300)
140 KOG0322 G-protein beta subunit 99.9 2.3E-20 4.9E-25 150.4 16.4 280 11-303 6-322 (323)
141 KOG0270 WD40 repeat-containing 99.9 3.5E-20 7.5E-25 159.3 18.5 236 29-305 192-450 (463)
142 KOG0639 Transducin-like enhanc 99.8 2.6E-20 5.7E-25 162.3 15.7 241 68-359 419-665 (705)
143 KOG2048 WD40 repeat protein [G 99.8 1.3E-18 2.7E-23 156.9 26.7 243 68-358 25-276 (691)
144 KOG0321 WD40 repeat-containing 99.8 1.9E-19 4.2E-24 161.0 18.8 246 80-360 66-350 (720)
145 KOG1274 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 161.7 24.1 241 67-358 12-263 (933)
146 KOG0642 Cell-cycle nuclear pro 99.8 7.7E-20 1.7E-24 161.6 14.6 212 137-360 289-564 (577)
147 KOG2055 WD40 repeat protein [G 99.8 2.1E-18 4.7E-23 149.0 22.6 287 18-357 212-512 (514)
148 KOG0294 WD40 repeat-containing 99.8 1.8E-18 4E-23 142.8 21.0 195 137-357 38-237 (362)
149 KOG4378 Nuclear protein COP1 [ 99.8 1.3E-18 2.8E-23 151.6 20.4 259 22-330 37-305 (673)
150 KOG4328 WD40 protein [Function 99.8 7.8E-19 1.7E-23 151.5 17.3 204 139-357 183-399 (498)
151 KOG1034 Transcriptional repres 99.8 1.2E-17 2.5E-22 138.8 21.8 297 9-356 27-382 (385)
152 KOG0649 WD40 repeat protein [G 99.8 1.8E-16 4E-21 126.7 25.7 248 24-303 17-273 (325)
153 KOG0303 Actin-binding protein 99.8 6.6E-18 1.4E-22 143.4 18.5 251 14-305 76-338 (472)
154 KOG1445 Tumor-specific antigen 99.8 6.1E-18 1.3E-22 151.5 19.2 114 233-357 630-750 (1012)
155 KOG0642 Cell-cycle nuclear pro 99.8 2E-18 4.2E-23 152.8 15.8 273 14-318 289-573 (577)
156 KOG4378 Nuclear protein COP1 [ 99.8 5.7E-18 1.2E-22 147.7 18.0 225 11-287 73-304 (673)
157 KOG1007 WD repeat protein TSSC 99.8 1.1E-17 2.3E-22 136.8 18.4 259 12-303 56-360 (370)
158 KOG1007 WD repeat protein TSSC 99.8 2.5E-18 5.3E-23 140.5 14.4 207 138-357 59-289 (370)
159 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.8E-16 8.3E-21 137.8 29.9 263 9-327 21-299 (300)
160 COG2319 FOG: WD40 repeat [Gene 99.8 1.8E-15 3.8E-20 139.0 34.4 285 14-358 60-360 (466)
161 KOG4227 WD40 repeat protein [G 99.8 2.9E-17 6.2E-22 139.5 20.1 300 11-356 48-386 (609)
162 KOG2919 Guanine nucleotide-bin 99.8 4.2E-17 9.1E-22 135.3 19.1 270 28-347 60-360 (406)
163 KOG1517 Guanine nucleotide bin 99.8 2.3E-16 5.1E-21 148.9 25.1 290 29-360 1076-1384(1387)
164 KOG0307 Vesicle coat complex C 99.8 5.9E-18 1.3E-22 161.0 14.3 233 81-358 83-328 (1049)
165 KOG1188 WD40 repeat protein [G 99.8 5.7E-17 1.2E-21 135.4 17.6 276 30-356 41-345 (376)
166 KOG0307 Vesicle coat complex C 99.8 1.2E-17 2.7E-22 158.8 14.2 243 21-305 66-328 (1049)
167 KOG1240 Protein kinase contain 99.8 3.2E-16 7E-21 150.0 23.6 266 7-303 1036-1333(1431)
168 KOG1273 WD40 repeat protein [G 99.7 6.7E-16 1.4E-20 127.8 21.6 268 22-303 26-321 (405)
169 KOG1273 WD40 repeat protein [G 99.7 1.5E-16 3.3E-21 131.6 17.3 194 145-357 26-226 (405)
170 KOG0303 Actin-binding protein 99.7 5.4E-16 1.2E-20 131.9 18.5 201 138-357 77-294 (472)
171 KOG1188 WD40 repeat protein [G 99.7 3.2E-16 6.9E-21 131.0 16.8 255 9-303 60-345 (376)
172 KOG1587 Cytoplasmic dynein int 99.7 2.9E-15 6.4E-20 138.5 24.8 273 38-359 221-518 (555)
173 KOG2055 WD40 repeat protein [G 99.7 1.3E-15 2.9E-20 132.0 20.0 243 68-357 213-467 (514)
174 KOG0644 Uncharacterized conser 99.7 1.1E-17 2.4E-22 154.1 7.2 238 11-356 182-425 (1113)
175 COG2319 FOG: WD40 repeat [Gene 99.7 1.6E-13 3.4E-18 126.0 34.8 289 11-359 100-402 (466)
176 KOG1034 Transcriptional repres 99.7 1.4E-16 3E-21 132.5 12.5 207 143-358 90-338 (385)
177 KOG1538 Uncharacterized conser 99.7 4.4E-16 9.5E-21 140.6 16.4 246 8-361 42-297 (1081)
178 KOG0322 G-protein beta subunit 99.7 4.7E-16 1E-20 125.7 14.7 147 199-356 168-322 (323)
179 KOG0650 WD40 repeat nucleolar 99.7 1.7E-15 3.7E-20 135.2 17.7 207 136-360 394-640 (733)
180 KOG1334 WD40 repeat protein [G 99.7 6E-16 1.3E-20 135.0 14.5 296 11-356 134-465 (559)
181 PRK11028 6-phosphogluconolacto 99.7 1.4E-13 3E-18 123.4 30.0 277 32-359 5-306 (330)
182 KOG1963 WD40 repeat protein [G 99.7 6.5E-14 1.4E-18 130.5 27.8 292 17-358 203-539 (792)
183 KOG2919 Guanine nucleotide-bin 99.7 2.3E-14 5E-19 119.2 21.4 196 151-358 120-328 (406)
184 KOG0649 WD40 repeat protein [G 99.7 8.6E-15 1.9E-19 117.2 18.0 193 145-357 13-235 (325)
185 KOG1009 Chromatin assembly com 99.7 1.1E-14 2.4E-19 124.4 19.6 298 19-353 13-368 (434)
186 KOG0290 Conserved WD40 repeat- 99.7 2.5E-15 5.4E-20 123.2 14.6 206 140-358 94-319 (364)
187 KOG0771 Prolactin regulatory e 99.7 3.5E-15 7.6E-20 128.2 15.9 198 146-358 148-355 (398)
188 KOG0290 Conserved WD40 repeat- 99.7 3.9E-15 8.4E-20 122.1 14.8 185 140-329 148-346 (364)
189 KOG1517 Guanine nucleotide bin 99.6 1.8E-14 3.8E-19 136.4 19.1 250 19-304 1109-1381(1387)
190 KOG1963 WD40 repeat protein [G 99.6 1E-12 2.3E-17 122.6 28.3 115 140-259 203-321 (792)
191 KOG1523 Actin-related protein 99.6 4.2E-13 9.2E-18 111.7 22.6 237 18-295 9-269 (361)
192 KOG1523 Actin-related protein 99.6 4.6E-14 9.9E-19 117.3 16.4 208 141-360 9-239 (361)
193 KOG1587 Cytoplasmic dynein int 99.6 1.6E-13 3.4E-18 127.2 21.4 209 141-359 241-474 (555)
194 KOG1445 Tumor-specific antigen 99.6 1.1E-14 2.4E-19 131.0 12.6 202 144-358 629-845 (1012)
195 KOG1310 WD40 repeat protein [G 99.6 8.4E-15 1.8E-19 129.7 10.0 166 137-302 45-229 (758)
196 PRK11028 6-phosphogluconolacto 99.6 9.5E-12 2.1E-16 111.5 29.8 254 11-304 27-304 (330)
197 KOG2110 Uncharacterized conser 99.6 1.1E-11 2.5E-16 105.1 27.4 195 22-261 49-249 (391)
198 KOG4227 WD40 repeat protein [G 99.6 1.2E-13 2.7E-18 117.7 15.4 164 138-304 52-225 (609)
199 KOG0771 Prolactin regulatory e 99.5 1.7E-13 3.7E-18 117.9 14.6 193 72-303 148-353 (398)
200 KOG1524 WD40 repeat-containing 99.5 4.6E-13 1E-17 118.5 17.6 167 140-332 102-270 (737)
201 KOG0974 WD-repeat protein WDR6 99.5 3.1E-13 6.8E-18 128.1 17.1 196 145-359 90-290 (967)
202 KOG1009 Chromatin assembly com 99.5 1.3E-13 2.9E-18 117.9 12.6 160 185-355 13-193 (434)
203 KOG2394 WD40 protein DMR-N9 [G 99.5 8.1E-13 1.7E-17 117.0 15.8 136 142-286 219-384 (636)
204 PRK01742 tolB translocation pr 99.5 2E-12 4.4E-17 119.7 19.5 232 38-329 183-426 (429)
205 KOG2110 Uncharacterized conser 99.5 2.1E-10 4.5E-15 97.6 29.3 152 142-304 87-248 (391)
206 KOG1524 WD40 repeat-containing 99.5 1.4E-12 2.9E-17 115.6 16.8 163 154-331 75-240 (737)
207 KOG1240 Protein kinase contain 99.5 1.3E-11 2.9E-16 119.0 24.0 258 68-360 1048-1337(1431)
208 KOG1310 WD40 repeat protein [G 99.5 9.6E-13 2.1E-17 116.8 14.1 223 12-266 43-309 (758)
209 KOG0644 Uncharacterized conser 99.5 8.5E-14 1.9E-18 128.9 7.0 192 139-356 187-382 (1113)
210 KOG1538 Uncharacterized conser 99.5 1.4E-12 3.1E-17 118.2 14.3 197 144-359 14-213 (1081)
211 KOG3881 Uncharacterized conser 99.5 1.9E-11 4E-16 104.6 20.0 267 19-328 55-341 (412)
212 KOG1409 Uncharacterized conser 99.4 1.9E-11 4.1E-16 102.9 19.0 247 10-304 15-270 (404)
213 KOG3881 Uncharacterized conser 99.4 2.6E-11 5.6E-16 103.7 18.2 210 15-261 101-321 (412)
214 KOG1272 WD40-repeat-containing 99.4 8.1E-13 1.8E-17 115.0 7.1 189 146-357 133-323 (545)
215 KOG1409 Uncharacterized conser 99.4 2.1E-11 4.7E-16 102.6 15.0 208 140-357 22-270 (404)
216 KOG1334 WD40 repeat protein [G 99.4 2E-11 4.4E-16 107.1 14.0 251 64-356 138-423 (559)
217 PRK01742 tolB translocation pr 99.4 7.9E-11 1.7E-15 109.2 18.9 220 11-286 195-425 (429)
218 PF08662 eIF2A: Eukaryotic tra 99.3 9.3E-11 2E-15 96.1 16.6 145 147-304 10-179 (194)
219 KOG1272 WD40-repeat-containing 99.3 4.3E-12 9.4E-17 110.6 8.8 272 28-355 140-419 (545)
220 KOG0974 WD-repeat protein WDR6 99.3 8.6E-11 1.9E-15 111.9 17.0 188 28-260 98-288 (967)
221 KOG2394 WD40 protein DMR-N9 [G 99.3 2.8E-11 6.1E-16 107.4 12.1 200 152-357 183-452 (636)
222 KOG2111 Uncharacterized conser 99.3 3.2E-09 6.9E-14 88.8 23.1 177 164-358 75-257 (346)
223 PF08662 eIF2A: Eukaryotic tra 99.3 1.1E-10 2.5E-15 95.6 14.2 109 142-260 59-179 (194)
224 KOG2111 Uncharacterized conser 99.3 2.6E-09 5.7E-14 89.3 22.1 161 68-262 94-258 (346)
225 KOG2321 WD40 repeat protein [G 99.3 2.2E-09 4.8E-14 96.4 22.4 273 17-354 49-340 (703)
226 KOG4547 WD40 repeat-containing 99.3 6.1E-10 1.3E-14 100.2 19.0 195 151-358 2-221 (541)
227 KOG1354 Serine/threonine prote 99.3 5.1E-10 1.1E-14 94.4 17.0 300 19-361 25-363 (433)
228 KOG4547 WD40 repeat-containing 99.3 9.7E-10 2.1E-14 98.9 19.5 141 153-303 69-219 (541)
229 KOG2139 WD40 repeat protein [G 99.2 1.2E-09 2.6E-14 92.8 17.4 197 144-359 100-311 (445)
230 PF10282 Lactonase: Lactonase, 99.2 1.4E-06 3.1E-11 78.5 35.7 206 144-357 88-322 (345)
231 PRK03629 tolB translocation pr 99.2 2.2E-08 4.8E-13 92.7 24.6 167 146-328 246-427 (429)
232 KOG1064 RAVE (regulator of V-A 99.2 2.4E-10 5.1E-15 114.3 11.9 191 139-360 2205-2401(2439)
233 PRK03629 tolB translocation pr 99.1 4.5E-08 9.7E-13 90.7 25.0 193 142-357 198-406 (429)
234 PRK05137 tolB translocation pr 99.1 1.5E-07 3.2E-12 87.7 25.4 176 140-331 199-389 (435)
235 PF10282 Lactonase: Lactonase, 99.0 2.7E-06 5.8E-11 76.7 32.0 256 28-308 47-326 (345)
236 KOG1064 RAVE (regulator of V-A 99.0 9.6E-10 2.1E-14 110.1 9.7 175 80-305 2222-2399(2439)
237 PRK04922 tolB translocation pr 99.0 8.5E-08 1.9E-12 89.2 22.1 174 141-330 202-390 (433)
238 KOG1354 Serine/threonine prote 99.0 1.2E-08 2.5E-13 86.4 14.5 203 142-357 25-301 (433)
239 PRK02889 tolB translocation pr 99.0 8.6E-08 1.9E-12 88.9 21.0 179 141-331 194-383 (427)
240 PRK02889 tolB translocation pr 99.0 1.2E-07 2.5E-12 88.0 21.1 113 144-263 241-363 (427)
241 KOG2139 WD40 repeat protein [G 99.0 5.7E-08 1.2E-12 82.9 16.7 145 142-295 140-302 (445)
242 PF02239 Cytochrom_D1: Cytochr 99.0 2.6E-06 5.6E-11 77.0 28.6 268 32-358 9-303 (369)
243 KOG2321 WD40 repeat protein [G 99.0 5.5E-08 1.2E-12 87.6 17.3 204 140-356 49-301 (703)
244 PRK04922 tolB translocation pr 99.0 1.3E-07 2.9E-12 87.9 20.9 110 146-262 251-370 (433)
245 KOG0309 Conserved WD40 repeat- 99.0 2.2E-09 4.8E-14 99.1 8.7 210 145-360 70-342 (1081)
246 KOG0280 Uncharacterized conser 99.0 2.5E-07 5.4E-12 76.9 19.5 196 145-356 124-332 (339)
247 TIGR03300 assembly_YfgL outer 98.9 2.1E-06 4.5E-11 78.6 27.1 177 155-354 191-376 (377)
248 KOG4497 Uncharacterized conser 98.9 2.4E-07 5.2E-12 78.2 18.7 185 22-258 13-238 (447)
249 KOG0280 Uncharacterized conser 98.9 1.5E-07 3.2E-12 78.3 16.8 182 164-357 46-241 (339)
250 KOG4497 Uncharacterized conser 98.9 2.2E-09 4.7E-14 90.2 5.3 110 147-263 13-125 (447)
251 PRK05137 tolB translocation pr 98.9 1.1E-06 2.3E-11 82.0 22.7 197 11-260 193-412 (435)
252 TIGR02800 propeller_TolB tol-p 98.9 6.4E-07 1.4E-11 83.1 21.2 153 141-305 188-355 (417)
253 PF02239 Cytochrom_D1: Cytochr 98.8 1.9E-05 4.1E-10 71.4 29.2 296 9-357 26-347 (369)
254 KOG4714 Nucleoporin [Nuclear s 98.8 1.6E-07 3.5E-12 76.8 14.0 132 144-302 181-316 (319)
255 KOG4190 Uncharacterized conser 98.8 2.1E-08 4.6E-13 89.9 9.5 284 8-300 724-1032(1034)
256 KOG3914 WD repeat protein WDR4 98.8 1.1E-07 2.4E-12 82.2 12.7 149 146-304 66-223 (390)
257 TIGR02800 propeller_TolB tol-p 98.8 3.1E-06 6.7E-11 78.5 23.5 111 144-261 235-355 (417)
258 KOG3914 WD repeat protein WDR4 98.8 1.1E-07 2.4E-12 82.1 12.3 149 191-357 68-223 (390)
259 COG5170 CDC55 Serine/threonine 98.8 7.9E-07 1.7E-11 74.6 16.1 280 18-302 25-365 (460)
260 COG2706 3-carboxymuconate cycl 98.7 0.00012 2.7E-09 63.0 29.4 165 145-309 147-326 (346)
261 KOG0309 Conserved WD40 repeat- 98.7 4.4E-08 9.6E-13 90.7 8.5 203 142-360 24-235 (1081)
262 PF00400 WD40: WD domain, G-be 98.7 3.5E-08 7.6E-13 58.0 5.0 36 10-45 2-39 (39)
263 PRK00178 tolB translocation pr 98.7 6.4E-06 1.4E-10 76.7 22.5 116 140-262 196-321 (430)
264 KOG4532 WD40-like repeat conta 98.7 3.2E-06 6.9E-11 69.7 17.6 170 153-330 83-262 (344)
265 KOG4532 WD40-like repeat conta 98.7 7.4E-06 1.6E-10 67.6 19.6 190 30-263 85-285 (344)
266 PRK04792 tolB translocation pr 98.7 4.3E-06 9.3E-11 78.0 21.1 149 142-302 217-378 (448)
267 KOG2695 WD40 repeat protein [G 98.7 5.6E-08 1.2E-12 82.4 7.5 143 199-357 227-376 (425)
268 PF00400 WD40: WD domain, G-be 98.7 5.3E-08 1.1E-12 57.2 5.4 38 309-355 2-39 (39)
269 KOG4714 Nucleoporin [Nuclear s 98.7 2.8E-07 6.1E-12 75.4 11.0 157 140-304 87-254 (319)
270 TIGR03300 assembly_YfgL outer 98.7 3.9E-05 8.4E-10 70.2 26.5 264 26-357 62-338 (377)
271 KOG4190 Uncharacterized conser 98.6 1.2E-07 2.7E-12 85.2 7.8 169 131-303 724-905 (1034)
272 COG5170 CDC55 Serine/threonine 98.6 9.5E-07 2.1E-11 74.2 12.5 203 142-357 26-309 (460)
273 COG2706 3-carboxymuconate cycl 98.6 0.00029 6.2E-09 60.9 29.9 276 38-360 15-324 (346)
274 PLN02919 haloacid dehalogenase 98.5 5.1E-05 1.1E-09 77.7 25.2 203 144-358 625-889 (1057)
275 PF04762 IKI3: IKI3 family; I 98.5 0.00029 6.2E-09 71.1 29.6 312 18-358 74-457 (928)
276 PF15492 Nbas_N: Neuroblastoma 98.5 5E-05 1.1E-09 63.5 19.4 187 145-357 46-259 (282)
277 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00022 4.8E-09 63.4 23.9 107 150-262 201-332 (352)
278 PRK01029 tolB translocation pr 98.4 0.00013 2.8E-09 67.6 23.6 151 146-304 234-403 (428)
279 PRK01029 tolB translocation pr 98.4 7.4E-05 1.6E-09 69.3 21.3 195 144-357 186-403 (428)
280 PRK04792 tolB translocation pr 98.4 0.00012 2.6E-09 68.4 22.7 109 146-261 265-383 (448)
281 PLN02919 haloacid dehalogenase 98.4 0.00061 1.3E-08 70.0 29.0 158 145-305 685-889 (1057)
282 KOG2041 WD40 repeat protein [G 98.4 9.8E-05 2.1E-09 69.0 20.6 269 19-326 14-316 (1189)
283 PF04762 IKI3: IKI3 family; I 98.4 0.0011 2.4E-08 67.0 29.7 181 142-330 120-360 (928)
284 KOG0882 Cyclophilin-related pe 98.4 5.2E-06 1.1E-10 73.1 11.2 207 18-261 8-232 (558)
285 PRK00178 tolB translocation pr 98.3 0.0001 2.2E-09 68.7 20.4 127 165-303 180-318 (430)
286 KOG2695 WD40 repeat protein [G 98.3 3E-06 6.5E-11 72.2 8.8 165 158-328 228-402 (425)
287 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.0022 4.8E-08 57.2 30.8 199 146-358 108-331 (352)
288 KOG2114 Vacuolar assembly/sort 98.3 0.0003 6.5E-09 67.2 22.0 223 21-283 27-263 (933)
289 COG4946 Uncharacterized protei 98.3 0.0002 4.3E-09 63.9 19.7 115 140-260 357-477 (668)
290 KOG2315 Predicted translation 98.3 0.00029 6.3E-09 64.1 21.1 129 163-304 250-390 (566)
291 KOG2041 WD40 repeat protein [G 98.2 7.2E-05 1.6E-09 69.9 15.7 207 72-302 18-245 (1189)
292 PRK11138 outer membrane biogen 98.2 0.0024 5.3E-08 58.8 25.3 265 28-356 119-393 (394)
293 KOG2114 Vacuolar assembly/sort 98.2 0.00036 7.8E-09 66.7 19.1 193 150-357 31-243 (933)
294 KOG0882 Cyclophilin-related pe 98.1 5.5E-05 1.2E-09 66.9 11.7 200 141-357 8-231 (558)
295 PF13360 PQQ_2: PQQ-like domai 98.1 0.0018 4E-08 54.8 21.1 184 153-358 35-231 (238)
296 KOG2066 Vacuolar assembly/sort 98.1 9.4E-05 2E-09 70.0 13.4 144 142-305 39-188 (846)
297 KOG2066 Vacuolar assembly/sort 98.0 0.00066 1.4E-08 64.5 18.6 139 153-304 82-233 (846)
298 PRK11138 outer membrane biogen 98.0 0.0052 1.1E-07 56.6 24.5 234 27-303 67-311 (394)
299 PF13360 PQQ_2: PQQ-like domai 98.0 0.0049 1.1E-07 52.2 22.8 185 77-305 35-231 (238)
300 PF11768 DUF3312: Protein of u 98.0 5.8E-05 1.3E-09 69.2 11.0 115 142-262 205-331 (545)
301 KOG1275 PAB-dependent poly(A) 98.0 0.00018 3.8E-09 69.1 13.4 150 71-258 180-340 (1118)
302 PF15492 Nbas_N: Neuroblastoma 97.9 0.0037 8E-08 52.6 19.0 33 229-261 228-260 (282)
303 KOG1920 IkappaB kinase complex 97.9 0.0078 1.7E-07 60.1 23.8 162 142-309 109-327 (1265)
304 PF08450 SGL: SMP-30/Gluconola 97.9 0.011 2.4E-07 50.5 23.5 190 147-357 4-213 (246)
305 KOG3621 WD40 repeat-containing 97.9 0.00015 3.3E-09 67.7 11.1 117 145-261 36-155 (726)
306 PF08450 SGL: SMP-30/Gluconola 97.8 0.015 3.3E-07 49.6 28.7 172 145-327 42-233 (246)
307 PRK04043 tolB translocation pr 97.7 0.017 3.6E-07 53.5 22.2 112 144-262 189-311 (419)
308 KOG2315 Predicted translation 97.7 0.00075 1.6E-08 61.5 12.7 109 142-260 270-390 (566)
309 PF11768 DUF3312: Protein of u 97.7 0.00027 5.8E-09 65.0 9.9 74 140-216 257-331 (545)
310 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0054 1.2E-07 44.4 14.1 99 145-254 2-108 (111)
311 PF03178 CPSF_A: CPSF A subuni 97.5 0.027 5.8E-07 50.3 20.3 178 164-357 2-202 (321)
312 KOG1920 IkappaB kinase complex 97.5 0.036 7.8E-07 55.7 22.1 113 146-261 199-323 (1265)
313 COG4946 Uncharacterized protei 97.5 0.012 2.7E-07 52.9 17.2 140 153-305 331-478 (668)
314 KOG1645 RING-finger-containing 97.5 0.0063 1.4E-07 53.5 15.1 76 140-217 191-269 (463)
315 smart00320 WD40 WD40 repeats. 97.5 0.00021 4.7E-09 40.5 4.3 37 9-45 2-40 (40)
316 KOG1275 PAB-dependent poly(A) 97.5 0.0052 1.1E-07 59.5 14.9 145 151-302 184-340 (1118)
317 KOG1008 Uncharacterized conser 97.4 5.7E-05 1.2E-09 69.7 1.7 198 145-356 59-274 (783)
318 COG5354 Uncharacterized protei 97.4 0.031 6.7E-07 50.8 17.8 198 144-359 73-308 (561)
319 KOG1912 WD40 repeat protein [G 97.3 0.047 1E-06 52.4 18.9 187 156-356 81-303 (1062)
320 smart00320 WD40 WD40 repeats. 97.3 0.0008 1.7E-08 37.9 5.2 32 139-170 9-40 (40)
321 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.028 6.1E-07 40.7 13.8 103 233-352 2-109 (111)
322 COG5354 Uncharacterized protei 97.2 0.01 2.2E-07 53.9 13.2 158 184-359 31-212 (561)
323 PF03178 CPSF_A: CPSF A subuni 97.1 0.17 3.8E-06 45.1 21.2 180 164-352 62-260 (321)
324 KOG1912 WD40 repeat protein [G 97.1 0.029 6.3E-07 53.7 15.1 147 145-302 18-184 (1062)
325 PF07433 DUF1513: Protein of u 97.0 0.19 4.1E-06 43.7 18.8 152 148-305 56-248 (305)
326 PF07433 DUF1513: Protein of u 97.0 0.21 4.5E-06 43.5 19.9 99 147-248 9-116 (305)
327 PRK04043 tolB translocation pr 97.0 0.31 6.6E-06 45.2 20.9 93 148-250 282-387 (419)
328 KOG1645 RING-finger-containing 96.9 0.0032 7E-08 55.3 7.0 93 166-264 175-270 (463)
329 KOG4640 Anaphase-promoting com 96.9 0.0066 1.4E-07 56.5 9.3 92 144-240 22-115 (665)
330 PF08596 Lgl_C: Lethal giant l 96.9 0.35 7.5E-06 44.3 23.3 158 141-303 85-289 (395)
331 PF08596 Lgl_C: Lethal giant l 96.9 0.36 7.8E-06 44.2 22.4 208 144-357 3-290 (395)
332 PF08553 VID27: VID27 cytoplas 96.8 0.072 1.6E-06 52.5 16.3 69 143-213 578-646 (794)
333 KOG3617 WD40 and TPR repeat-co 96.8 0.0027 5.7E-08 61.0 6.1 106 148-260 21-131 (1416)
334 PHA02713 hypothetical protein; 96.8 0.089 1.9E-06 50.7 16.6 186 153-357 303-533 (557)
335 KOG1008 Uncharacterized conser 96.8 0.00056 1.2E-08 63.4 1.6 158 140-303 100-274 (783)
336 KOG1832 HIV-1 Vpr-binding prot 96.7 0.0025 5.4E-08 61.5 5.4 112 140-261 1141-1256(1516)
337 PF04841 Vps16_N: Vps16, N-ter 96.7 0.49 1.1E-05 43.7 19.9 48 165-214 62-109 (410)
338 KOG1832 HIV-1 Vpr-binding prot 96.7 0.0019 4.1E-08 62.3 4.1 116 139-263 1098-1217(1516)
339 KOG3617 WD40 and TPR repeat-co 96.7 0.045 9.8E-07 53.0 13.0 69 145-214 62-131 (1416)
340 PF04053 Coatomer_WDAD: Coatom 96.6 0.3 6.6E-06 45.4 18.0 137 144-303 34-172 (443)
341 KOG3621 WD40 repeat-containing 96.5 0.013 2.8E-07 55.3 8.5 112 71-215 38-155 (726)
342 PF04841 Vps16_N: Vps16, N-ter 96.4 0.8 1.7E-05 42.4 23.3 69 143-212 217-285 (410)
343 KOG2314 Translation initiation 96.4 0.024 5.3E-07 52.1 9.1 100 144-247 251-363 (698)
344 PF04053 Coatomer_WDAD: Coatom 96.3 0.9 2E-05 42.3 21.3 180 146-357 72-262 (443)
345 PF12894 Apc4_WD40: Anaphase-p 96.3 0.016 3.5E-07 35.0 5.1 30 143-172 12-41 (47)
346 KOG2314 Translation initiation 96.3 0.13 2.8E-06 47.5 12.9 109 145-260 213-334 (698)
347 PF00780 CNH: CNH domain; Int 96.2 0.41 9E-06 41.5 16.1 148 152-304 5-165 (275)
348 PRK13616 lipoprotein LpqB; Pro 96.2 0.44 9.6E-06 46.1 17.4 149 143-303 350-524 (591)
349 KOG4640 Anaphase-promoting com 96.1 0.022 4.9E-07 53.1 7.7 73 186-263 21-95 (665)
350 KOG2444 WD40 repeat protein [G 96.1 0.02 4.3E-07 46.8 6.2 103 154-261 70-178 (238)
351 PF06977 SdiA-regulated: SdiA- 96.0 0.81 1.8E-05 39.0 24.5 186 142-330 21-233 (248)
352 KOG2444 WD40 repeat protein [G 96.0 0.024 5.2E-07 46.4 6.5 135 159-303 35-176 (238)
353 PF14870 PSII_BNR: Photosynthe 96.0 1 2.2E-05 39.5 17.0 154 142-301 144-301 (302)
354 KOG4441 Proteins containing BT 95.8 0.57 1.2E-05 45.3 16.1 187 153-356 284-498 (571)
355 PF08553 VID27: VID27 cytoplas 95.7 0.28 6.1E-06 48.5 13.6 134 161-302 501-645 (794)
356 PF02897 Peptidase_S9_N: Proly 95.5 2 4.4E-05 39.8 23.3 114 146-261 127-261 (414)
357 KOG4649 PQQ (pyrrolo-quinoline 95.5 1.3 2.7E-05 37.4 25.1 136 29-210 23-161 (354)
358 PF12234 Rav1p_C: RAVE protein 95.5 0.55 1.2E-05 45.3 14.3 109 150-260 37-156 (631)
359 KOG1916 Nuclear protein, conta 95.5 0.0039 8.4E-08 60.3 0.0 51 145-197 186-236 (1283)
360 PF05694 SBP56: 56kDa selenium 95.4 0.52 1.1E-05 43.0 13.1 104 163-266 221-348 (461)
361 KOG2079 Vacuolar assembly/sort 95.4 0.072 1.6E-06 53.0 8.3 101 153-259 98-202 (1206)
362 PRK02888 nitrous-oxide reducta 95.3 1.1 2.3E-05 43.1 15.5 95 205-304 295-404 (635)
363 PF12894 Apc4_WD40: Anaphase-p 95.3 0.057 1.2E-06 32.6 4.7 30 230-259 11-40 (47)
364 PRK02888 nitrous-oxide reducta 95.2 0.31 6.7E-06 46.6 11.6 95 164-261 296-405 (635)
365 KOG4441 Proteins containing BT 95.2 0.94 2E-05 43.8 15.0 177 153-350 332-534 (571)
366 PF00930 DPPIV_N: Dipeptidyl p 94.7 0.13 2.9E-06 46.5 7.7 93 163-258 22-129 (353)
367 PHA02713 hypothetical protein; 94.6 0.73 1.6E-05 44.6 12.8 70 240-310 462-539 (557)
368 cd00216 PQQ_DH Dehydrogenases 94.5 4.4 9.6E-05 38.5 22.2 154 148-314 222-432 (488)
369 KOG2395 Protein involved in va 94.4 0.65 1.4E-05 43.0 11.0 124 153-285 344-480 (644)
370 PHA02790 Kelch-like protein; P 94.3 5.1 0.00011 38.0 18.0 185 152-357 270-470 (480)
371 PHA03098 kelch-like protein; P 94.2 5.7 0.00012 38.3 19.0 153 152-312 293-472 (534)
372 KOG2079 Vacuolar assembly/sort 93.7 0.27 5.8E-06 49.2 7.7 68 142-212 130-201 (1206)
373 PRK13616 lipoprotein LpqB; Pro 93.6 1.9 4.2E-05 41.8 13.4 109 145-260 399-525 (591)
374 COG0823 TolB Periplasmic compo 93.3 4.3 9.4E-05 37.7 14.7 111 144-261 194-315 (425)
375 KOG2395 Protein involved in va 93.3 0.65 1.4E-05 43.0 9.0 109 145-259 378-499 (644)
376 PHA03098 kelch-like protein; P 93.2 4.5 9.8E-05 38.9 15.4 154 153-313 342-520 (534)
377 COG3204 Uncharacterized protei 93.1 5.3 0.00011 34.5 18.4 161 142-303 85-262 (316)
378 PF07569 Hira: TUP1-like enhan 93.1 0.92 2E-05 37.9 9.1 64 150-213 18-94 (219)
379 PF10313 DUF2415: Uncharacteri 92.9 0.6 1.3E-05 27.4 5.4 31 143-173 1-34 (43)
380 PRK13684 Ycf48-like protein; P 92.9 6.8 0.00015 35.2 17.9 154 143-302 173-329 (334)
381 COG3391 Uncharacterized conser 92.4 3.5 7.6E-05 37.8 12.8 109 146-261 77-191 (381)
382 PF10647 Gmad1: Lipoprotein Lp 92.4 6.5 0.00014 33.7 16.0 152 144-300 25-192 (253)
383 KOG2377 Uncharacterized conser 92.2 4.6 9.9E-05 37.1 12.6 119 164-287 43-164 (657)
384 COG3490 Uncharacterized protei 92.2 7 0.00015 33.7 13.5 53 149-202 120-178 (366)
385 PF08728 CRT10: CRT10; InterP 92.0 12 0.00027 36.9 16.1 107 152-259 112-245 (717)
386 PF10168 Nup88: Nuclear pore c 91.8 10 0.00022 37.9 15.7 81 187-267 86-186 (717)
387 KOG1916 Nuclear protein, conta 91.7 0.5 1.1E-05 46.6 6.5 112 141-259 131-264 (1283)
388 PF07995 GSDH: Glucose / Sorbo 91.6 1.9 4.1E-05 38.7 9.9 108 144-253 3-136 (331)
389 COG3386 Gluconolactonase [Carb 91.1 10 0.00022 33.5 22.8 159 163-327 84-263 (307)
390 PF10313 DUF2415: Uncharacteri 91.1 1.3 2.8E-05 26.0 5.4 30 232-261 2-34 (43)
391 KOG2377 Uncharacterized conser 91.1 3.5 7.5E-05 37.8 10.6 74 230-303 66-139 (657)
392 KOG4649 PQQ (pyrrolo-quinoline 90.7 9.5 0.00021 32.4 13.5 102 154-262 23-125 (354)
393 PF00780 CNH: CNH domain; Int 90.6 11 0.00023 32.6 26.3 241 28-316 6-265 (275)
394 KOG3630 Nuclear pore complex, 90.1 1.7 3.7E-05 44.1 8.6 138 144-287 102-254 (1405)
395 COG5276 Uncharacterized conser 90.0 12 0.00026 32.4 27.3 201 20-263 87-288 (370)
396 PF10168 Nup88: Nuclear pore c 89.8 23 0.0005 35.4 19.3 73 144-217 86-182 (717)
397 COG3386 Gluconolactonase [Carb 89.7 14 0.0003 32.7 21.5 135 146-286 114-264 (307)
398 COG0823 TolB Periplasmic compo 89.4 2.8 6.2E-05 38.9 9.2 108 146-261 241-359 (425)
399 PF06433 Me-amine-dh_H: Methyl 89.1 16 0.00035 32.6 18.5 197 148-358 100-321 (342)
400 PF05096 Glu_cyclase_2: Glutam 89.0 14 0.0003 31.7 18.9 110 145-261 47-158 (264)
401 PF12234 Rav1p_C: RAVE protein 88.8 21 0.00045 34.9 14.6 108 191-302 35-154 (631)
402 PF00930 DPPIV_N: Dipeptidyl p 88.2 20 0.00042 32.5 20.3 179 143-323 43-284 (353)
403 cd00216 PQQ_DH Dehydrogenases 87.8 26 0.00056 33.4 24.8 71 28-99 60-131 (488)
404 PF14727 PHTB1_N: PTHB1 N-term 87.7 23 0.0005 32.8 16.2 104 198-303 39-162 (418)
405 PF12768 Rax2: Cortical protei 87.6 18 0.00039 31.5 14.1 113 206-329 16-147 (281)
406 PRK13684 Ycf48-like protein; P 87.3 22 0.00047 32.0 19.7 157 185-356 172-330 (334)
407 PF07569 Hira: TUP1-like enhan 86.7 5.3 0.00012 33.4 8.5 63 197-260 23-95 (219)
408 TIGR02604 Piru_Ver_Nterm putat 86.3 11 0.00024 34.3 11.1 105 143-249 14-142 (367)
409 PF14761 HPS3_N: Hermansky-Pud 86.3 18 0.00038 29.9 13.1 18 79-96 29-46 (215)
410 PRK10115 protease 2; Provision 85.8 40 0.00087 33.7 23.9 112 144-260 128-255 (686)
411 COG5167 VID27 Protein involved 85.6 16 0.00035 34.3 11.2 123 152-285 477-612 (776)
412 PF07995 GSDH: Glucose / Sorbo 85.5 19 0.00041 32.3 12.0 54 187-241 3-59 (331)
413 PLN00033 photosystem II stabil 85.2 31 0.00068 31.8 17.7 150 189-354 242-396 (398)
414 PF15390 DUF4613: Domain of un 85.1 37 0.0008 32.6 13.9 119 139-260 53-186 (671)
415 PF12657 TFIIIC_delta: Transcr 84.0 12 0.00027 29.8 9.2 30 232-261 87-122 (173)
416 PF08728 CRT10: CRT10; InterP 83.3 25 0.00054 34.8 12.2 119 232-356 102-245 (717)
417 COG3391 Uncharacterized conser 82.9 38 0.00083 31.0 19.6 115 144-261 117-240 (381)
418 PHA02790 Kelch-like protein; P 82.7 45 0.00097 31.7 15.0 132 152-295 317-456 (480)
419 TIGR02604 Piru_Ver_Nterm putat 82.3 39 0.00085 30.7 13.9 71 187-259 15-98 (367)
420 TIGR03606 non_repeat_PQQ dehyd 81.4 48 0.001 31.2 14.9 109 141-251 28-166 (454)
421 PF11715 Nup160: Nucleoporin N 81.1 4 8.7E-05 39.4 6.3 36 145-180 217-256 (547)
422 PF14655 RAB3GAP2_N: Rab3 GTPa 80.4 30 0.00065 32.1 11.1 38 143-180 308-345 (415)
423 KOG4460 Nuclear pore complex, 80.4 33 0.00071 32.5 11.1 76 187-262 105-200 (741)
424 PF06977 SdiA-regulated: SdiA- 79.9 37 0.00081 29.0 21.8 207 14-255 16-245 (248)
425 KOG4499 Ca2+-binding protein R 79.7 36 0.00078 28.6 13.1 102 189-295 161-276 (310)
426 PF10647 Gmad1: Lipoprotein Lp 79.3 40 0.00086 28.9 13.3 137 187-329 25-176 (253)
427 PF14655 RAB3GAP2_N: Rab3 GTPa 78.9 32 0.00068 31.9 10.8 91 235-328 6-118 (415)
428 KOG3630 Nuclear pore complex, 78.7 35 0.00076 35.4 11.6 101 144-248 157-261 (1405)
429 PF12341 DUF3639: Protein of u 78.3 4.9 0.00011 21.0 3.2 25 21-45 3-27 (27)
430 PF13449 Phytase-like: Esteras 77.7 48 0.001 29.6 11.6 101 146-247 88-231 (326)
431 KOG1900 Nuclear pore complex, 77.5 51 0.0011 34.8 12.5 140 162-305 97-273 (1311)
432 TIGR03075 PQQ_enz_alc_DH PQQ-d 76.8 37 0.0008 32.7 11.2 105 154-263 69-192 (527)
433 COG5276 Uncharacterized conser 76.2 53 0.0011 28.7 19.4 135 186-329 87-224 (370)
434 TIGR02276 beta_rpt_yvtn 40-res 76.1 12 0.00026 21.3 6.0 31 152-182 1-32 (42)
435 COG5290 IkappaB kinase complex 76.0 50 0.0011 33.0 11.4 30 142-171 112-141 (1243)
436 PF14870 PSII_BNR: Photosynthe 75.9 56 0.0012 28.9 24.9 165 174-354 133-301 (302)
437 TIGR03547 muta_rot_YjhT mutatr 73.5 69 0.0015 28.8 12.6 13 239-251 255-267 (346)
438 PF06433 Me-amine-dh_H: Methyl 72.8 71 0.0015 28.6 18.8 74 145-220 240-326 (342)
439 KOG1900 Nuclear pore complex, 72.0 69 0.0015 33.9 11.9 77 185-261 178-273 (1311)
440 PF02333 Phytase: Phytase; In 71.2 84 0.0018 28.8 23.9 198 152-359 66-292 (381)
441 KOG2247 WD40 repeat-containing 71.1 0.83 1.8E-05 42.0 -1.3 139 148-298 40-182 (615)
442 PF07676 PD40: WD40-like Beta 70.7 14 0.00029 20.8 4.3 19 231-249 9-27 (39)
443 PF14781 BBS2_N: Ciliary BBSom 69.8 47 0.001 25.3 13.0 105 149-260 5-125 (136)
444 KOG1897 Damage-specific DNA bi 67.7 1.6E+02 0.0034 30.5 26.1 109 232-355 776-896 (1096)
445 PF01436 NHL: NHL repeat; Int 67.7 16 0.00034 19.0 4.2 25 145-169 4-28 (28)
446 COG4590 ABC-type uncharacteriz 67.5 38 0.00082 31.4 8.2 64 153-218 327-390 (733)
447 PLN00033 photosystem II stabil 66.4 1.1E+02 0.0024 28.3 18.0 152 145-301 241-396 (398)
448 PF14761 HPS3_N: Hermansky-Pud 65.6 33 0.00072 28.4 6.9 50 197-249 29-78 (215)
449 TIGR03547 muta_rot_YjhT mutatr 65.4 1E+02 0.0022 27.6 17.1 11 206-216 168-178 (346)
450 PF08801 Nucleoporin_N: Nup133 65.2 1.2E+02 0.0026 28.2 17.7 27 279-305 192-220 (422)
451 PF11715 Nup160: Nucleoporin N 65.0 54 0.0012 31.7 9.6 32 232-263 216-251 (547)
452 PF05694 SBP56: 56kDa selenium 64.4 1.2E+02 0.0027 28.2 19.5 197 153-360 86-345 (461)
453 KOG4499 Ca2+-binding protein R 63.4 55 0.0012 27.6 7.8 50 147-197 216-265 (310)
454 TIGR03074 PQQ_membr_DH membran 63.4 1.3E+02 0.0028 30.6 11.9 66 154-219 194-283 (764)
455 COG3490 Uncharacterized protei 61.7 29 0.00063 30.1 6.0 56 192-250 120-181 (366)
456 KOG3616 Selective LIM binding 59.1 23 0.00049 35.0 5.6 68 143-213 15-82 (1636)
457 PF15390 DUF4613: Domain of un 58.4 1.8E+02 0.004 28.2 16.4 68 147-214 117-186 (671)
458 smart00564 PQQ beta-propeller 56.0 30 0.00064 18.3 3.9 23 156-178 8-30 (33)
459 KOG4460 Nuclear pore complex, 54.2 1.7E+02 0.0038 27.9 10.1 72 145-216 106-200 (741)
460 KOG1983 Tomosyn and related SN 51.6 3.2E+02 0.0069 28.9 13.2 69 184-261 197-265 (993)
461 PF14779 BBS1: Ciliary BBSome 51.3 94 0.002 26.7 7.5 69 141-211 175-255 (257)
462 COG4590 ABC-type uncharacteriz 50.9 1.2E+02 0.0026 28.4 8.4 162 185-359 220-388 (733)
463 COG5167 VID27 Protein involved 50.4 1E+02 0.0022 29.3 8.0 65 190-259 567-631 (776)
464 PF12768 Rax2: Cortical protei 49.8 1.8E+02 0.0039 25.5 10.1 92 164-258 16-121 (281)
465 PF13570 PQQ_3: PQQ-like domai 48.6 37 0.00081 19.2 3.5 23 74-96 17-39 (40)
466 KOG3522 Predicted guanine nucl 48.4 1.1E+02 0.0024 30.8 8.3 69 144-215 628-698 (925)
467 PF12657 TFIIIC_delta: Transcr 46.8 1.5E+02 0.0032 23.6 8.9 26 278-303 87-120 (173)
468 TIGR03118 PEPCTERM_chp_1 conse 46.7 2.1E+02 0.0045 25.4 19.1 204 146-357 26-279 (336)
469 KOG3522 Predicted guanine nucl 45.7 73 0.0016 32.0 6.7 142 155-302 548-695 (925)
470 PF08954 DUF1900: Domain of un 45.3 1.1E+02 0.0023 23.4 6.4 70 232-302 12-82 (136)
471 TIGR03075 PQQ_enz_alc_DH PQQ-d 45.1 3E+02 0.0064 26.7 28.1 71 26-100 117-193 (527)
472 PF14583 Pectate_lyase22: Olig 44.5 2.1E+02 0.0045 26.3 9.0 68 149-217 42-113 (386)
473 PF14727 PHTB1_N: PTHB1 N-term 44.5 2.7E+02 0.0058 26.0 30.8 57 155-213 146-203 (418)
474 PF01731 Arylesterase: Arylest 43.5 53 0.0012 22.8 4.1 28 233-260 56-84 (86)
475 PRK14131 N-acetylneuraminic ac 43.4 2.6E+02 0.0056 25.5 11.9 13 164-176 189-201 (376)
476 COG3823 Glutamine cyclotransfe 42.0 2E+02 0.0044 23.9 13.9 100 153-260 55-158 (262)
477 TIGR02608 delta_60_rpt delta-6 41.2 82 0.0018 19.7 4.3 19 144-162 2-20 (55)
478 KOG2280 Vacuolar assembly/sort 40.2 2.2E+02 0.0047 28.5 8.8 50 164-215 64-113 (829)
479 PF08954 DUF1900: Domain of un 39.3 82 0.0018 24.1 4.9 52 145-196 13-67 (136)
480 KOG1897 Damage-specific DNA bi 38.7 4.8E+02 0.01 27.3 17.9 117 145-262 490-615 (1096)
481 TIGR03548 mutarot_permut cycli 37.3 2.9E+02 0.0064 24.4 15.5 183 153-349 72-314 (323)
482 PF01011 PQQ: PQQ enzyme repea 36.9 78 0.0017 17.6 4.0 25 157-181 3-27 (38)
483 KOG1983 Tomosyn and related SN 35.2 5.2E+02 0.011 27.4 11.3 31 144-174 37-67 (993)
484 KOG3616 Selective LIM binding 35.0 80 0.0017 31.5 5.1 67 231-302 15-81 (1636)
485 PF14269 Arylsulfotran_2: Aryl 31.7 2.1E+02 0.0046 25.2 7.1 67 233-303 146-219 (299)
486 KOG4659 Uncharacterized conser 31.3 2.8E+02 0.006 30.0 8.3 66 189-254 596-685 (1899)
487 KOG2280 Vacuolar assembly/sort 31.2 5.7E+02 0.012 25.9 15.5 55 143-197 217-271 (829)
488 PF08309 LVIVD: LVIVD repeat; 30.3 1.2E+02 0.0026 17.7 4.8 31 20-50 2-32 (42)
489 KOG1896 mRNA cleavage and poly 30.0 7.3E+02 0.016 26.7 19.5 140 205-357 1064-1213(1366)
490 TIGR03606 non_repeat_PQQ dehyd 29.7 4.9E+02 0.011 24.7 12.2 57 186-242 30-90 (454)
491 COG3823 Glutamine cyclotransfe 28.3 3.5E+02 0.0077 22.6 10.7 23 28-50 55-79 (262)
492 PF11635 Med16: Mediator compl 27.2 2.3E+02 0.0049 28.9 7.2 68 142-209 259-345 (753)
493 PF03088 Str_synth: Strictosid 25.8 2.2E+02 0.0048 19.9 4.9 38 161-200 34-71 (89)
494 PF07250 Glyoxal_oxid_N: Glyox 25.6 3.7E+02 0.008 23.0 7.1 89 168-258 50-146 (243)
495 COG3292 Predicted periplasmic 24.9 6.6E+02 0.014 24.6 9.2 110 145-260 378-491 (671)
496 PF11725 AvrE: Pathogenicity f 24.5 4.9E+02 0.011 29.0 9.0 149 141-302 361-514 (1774)
497 TIGR03118 PEPCTERM_chp_1 conse 23.7 5.3E+02 0.011 23.0 10.2 66 152-218 210-283 (336)
498 PF13449 Phytase-like: Esteras 21.6 5.8E+02 0.013 22.7 17.5 105 143-248 20-164 (326)
499 PF05096 Glu_cyclase_2: Glutam 21.1 5.5E+02 0.012 22.2 20.2 183 21-249 46-249 (264)
500 PRK10115 protease 2; Provision 21.1 8.6E+02 0.019 24.5 18.3 70 187-262 128-209 (686)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-47 Score=317.72 Aligned_cols=291 Identities=27% Similarity=0.453 Sum_probs=245.4
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~ 82 (362)
|-.+|...+.||.++|.++.|+ |..|||||.|.|+|+||+.+.+... ....|...|.++++++|. |+
T Consensus 103 pvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---------t~KgH~~WVlcvawsPDgk~iA 173 (480)
T KOG0271|consen 103 PVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---------TCKGHKNWVLCVAWSPDGKKIA 173 (480)
T ss_pred ccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---------eecCCccEEEEEEECCCcchhh
Confidence 4567889999999999999995 7899999999999999988754221 234577899999999875 99
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe-----cCCCEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT-----KDETLL 157 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l 157 (362)
+|+.||+|++||...++... -.+.+|...|++++|. |..++|
T Consensus 174 SG~~dg~I~lwdpktg~~~g---------------------------------~~l~gH~K~It~Lawep~hl~p~~r~l 220 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQIG---------------------------------RALRGHKKWITALAWEPLHLVPPCRRL 220 (480)
T ss_pred ccccCCeEEEecCCCCCccc---------------------------------ccccCcccceeEEeecccccCCCccce
Confidence 99999999999977655311 1224789999999995 467899
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCC-------------------
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNK------------------- 218 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~------------------- 218 (362)
|++|.||.|+|||+..++++..+. +|+.+|+|++|-.+|.+++|+.|++||+|+...+..
T Consensus 221 as~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd 299 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD 299 (480)
T ss_pred ecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch
Confidence 999999999999999999998775 899999999999999999999999999998654310
Q ss_pred --------------------------------------------------------cceeehhhhccccceeEEEEecCC
Q 044557 219 --------------------------------------------------------KHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 219 --------------------------------------------------------~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
..+.+..+.+|+.-|+.+.||||+
T Consensus 300 y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~ 379 (480)
T KOG0271|consen 300 YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG 379 (480)
T ss_pred hhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc
Confidence 000122356789999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
++++++|.|..|++|+.++++ .+..++||.+.|+.++|+.+ +++|||.|.++|+|++.. -++...|-||.+.
T Consensus 380 r~IASaSFDkSVkLW~g~tGk----~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t--kKl~~DLpGh~DE 453 (480)
T KOG0271|consen 380 RYIASASFDKSVKLWDGRTGK----FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT--KKLKQDLPGHADE 453 (480)
T ss_pred cEEEEeecccceeeeeCCCcc----hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee--eeecccCCCCCce
Confidence 999999999999999998754 56789999999999999877 999999999999999643 3556788999999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|.++.++|++. .++||+.|..+|+|.
T Consensus 454 Vf~vDwspDG~---------rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 454 VFAVDWSPDGQ---------RVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEEecCCCc---------eeecCCCceEEEeec
Confidence 99999988765 499999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-45 Score=311.44 Aligned_cols=276 Identities=25% Similarity=0.419 Sum_probs=235.2
Q ss_pred cCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc----eeEEEecCCcE
Q 044557 17 GHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD----KLFSAHQDHKI 90 (362)
Q Consensus 17 gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~l~s~~~dg~i 90 (362)
|.+.+|..+.| +++.|||||.+|.++||+.... ... ..+..|...+.++.+.+. .+++|+.||++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~-------~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLL-------QTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--cee-------EEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 66889998888 4889999999999999997653 222 233456777778877653 59999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
++|++....+ ...+.+|..+|..++|+|+|++|+|++.|.+-++||
T Consensus 244 klw~~~~e~~----------------------------------l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 244 KLWKLSQETP----------------------------------LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD 289 (459)
T ss_pred eeeccCCCcc----------------------------------hhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence 9999875432 112347889999999999999999999999999999
Q ss_pred CCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 171 TSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 171 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
++++..+. .+.+|...|.+++|.|+|. ++||+.|..-+|||+.++.+ +-.+.+|..+|.+|+|+|+|.+|+|||
T Consensus 290 ~~tk~ElL-~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~----im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 290 LETKSELL-LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC----IMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred cccchhhH-hhcccccccceeEecCCCceeeccCccchhheeecccCcE----EEEecccccceeeEeECCCceEEeecC
Confidence 99987654 3468999999999999998 56899999999999999863 445678999999999999999999999
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEe
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~ 326 (362)
.|+++++||++.... +..+.+|...|..+.|++ .+|+|+|.|++++||. .+.+.++++|.||.+.|.++.+
T Consensus 365 ~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs--~~~~~~~ksLaGHe~kV~s~Di 438 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS--TRTWSPLKSLAGHEGKVISLDI 438 (459)
T ss_pred CCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeec--CCCcccchhhcCCccceEEEEe
Confidence 999999999986442 567899999999999985 3899999999999997 5678999999999999999999
Q ss_pred eecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 327 AIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 327 ~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
++++ .+|+|+|.|.+||+|.
T Consensus 439 s~d~---------~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 439 SPDS---------QAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCC---------ceEEEeccCceeeecc
Confidence 8765 4699999999999995
No 3
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-39 Score=260.94 Aligned_cols=290 Identities=24% Similarity=0.366 Sum_probs=221.8
Q ss_pred ceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEE
Q 044557 10 HCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSA 84 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~ 84 (362)
.+..+|+||++.|++++.. .+.+++++.|.++.+|++..... .+....+.+..|...|..+..+. ++.+++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~----~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI----KYGVPVRRLTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc----ccCceeeeeeccceEecceEEccCCceEEec
Confidence 3567999999999999983 67899999999999999876422 12111233344566677776654 569999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|+++++||+..+++ ...+.+|...|.+++|+||.+.+++||.|+
T Consensus 82 swD~~lrlWDl~~g~~----------------------------------t~~f~GH~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGES----------------------------------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred cccceEEEEEecCCcE----------------------------------EEEEEecCCceEEEEecCCCceeecCCCcc
Confidence 9999999999986532 234568999999999999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDG---DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
+|++|++-.......-...+.+.|.+++|+|+. .+++++.|++||+||+.+.+ +...+.+|+..++.+++|||
T Consensus 128 Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~----l~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ----LRTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc----hhhccccccccEEEEEECCC
Confidence 999999876544443333347899999999984 38899999999999998754 44456789999999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEec----C
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLE----G 316 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~----~ 316 (362)
|..+++|+.||.+.+||+.+.+. +.. .+|...|.+++|+|+ +.+....+..||||+... ..++..|. |
T Consensus 204 GslcasGgkdg~~~LwdL~~~k~----lys-l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~--~~~v~~l~~d~~g 276 (315)
T KOG0279|consen 204 GSLCASGGKDGEAMLWDLNEGKN----LYS-LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLES--KAVVEELKLDGIG 276 (315)
T ss_pred CCEEecCCCCceEEEEEccCCce----eEe-ccCCCeEeeEEecCCceeEeeccCCceEEEeccc--hhhhhhccccccc
Confidence 99999999999999999987553 222 357889999999987 556666677799999643 22333332 1
Q ss_pred C---CCcEE--EEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 317 H---RGPVK--CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 317 h---~~~v~--~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
- .+.+. .++|+++ |..|.+|-.|+.||+|++.
T Consensus 277 ~s~~~~~~~clslaws~d---------G~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 277 PSSKAGDPICLSLAWSAD---------GQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccCCcEEEEEEEcCC---------CcEEEeeecCCcEEEEEee
Confidence 1 11333 3444433 4568899999999999985
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.4e-39 Score=254.99 Aligned_cols=274 Identities=24% Similarity=0.428 Sum_probs=221.0
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce-eEEEecCCcEEEEecCCCCCCccccee
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK-LFSAHQDHKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-l~s~~~dg~i~~w~~~~~~~~~~~~~~ 107 (362)
.-+|||+|.|.|||+|...++.+... +......|..+.+.+++ .+.++....||+||++...+.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT---------iqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~------ 74 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT---------IQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN------ 74 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE---------EecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCC------
Confidence 45899999999999999776543221 11235678888887775 445555778999999876532
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCccc
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDA 187 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~ 187 (362)
...++.+|...|+++.|..+|+++++||+||++||||++...+.+.+. |..+
T Consensus 75 --------------------------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~sp 126 (311)
T KOG0315|consen 75 --------------------------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSP 126 (311)
T ss_pred --------------------------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCC
Confidence 123445788999999999999999999999999999999988777664 6799
Q ss_pred EEEEEEcCCC-cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC--C
Q 044557 188 INAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD--G 264 (362)
Q Consensus 188 v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~--~ 264 (362)
|+++..+|+. .|++|..+|.|++||+........++. .-..+|.++.+.|||++|+.+...|+.++|++-... .
T Consensus 127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP---e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP---EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred cceEEecCCcceEEeecCCCcEEEEEccCCccccccCC---CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence 9999999876 599999999999999987654444432 344689999999999999999999999999986532 2
Q ss_pred cEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEE
Q 044557 265 NILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLV 342 (362)
Q Consensus 265 ~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l 342 (362)
.+..+..++.|..-++.+.++++ +|+++|.|.+++||+... .++....+.||+..+++++|+.+ +.||
T Consensus 204 ~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~-~~kle~~l~gh~rWvWdc~FS~d---------g~Yl 273 (311)
T KOG0315|consen 204 ELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD-FFKLELVLTGHQRWVWDCAFSAD---------GEYL 273 (311)
T ss_pred cceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC-ceeeEEEeecCCceEEeeeeccC---------ccEE
Confidence 34456678899999999989876 999999999999998644 35677789999999999999755 3689
Q ss_pred EecCCCCcEEEEeccc
Q 044557 343 CSGSLDCDIKVWQISF 358 (362)
Q Consensus 343 ~s~s~D~~i~~W~~~~ 358 (362)
++||.|+.+|+|+++.
T Consensus 274 vTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSA 289 (311)
T ss_pred EecCCCCceeeccccc
Confidence 9999999999999964
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=256.90 Aligned_cols=291 Identities=21% Similarity=0.357 Sum_probs=230.4
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~ 84 (362)
.+.-++|+||.+.|.++.|. +++|+|+|.||.+.|||.-+.. +. +.+......|...++.+ +.++.|
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--K~-------haipl~s~WVMtCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--KV-------HAIPLPSSWVMTCAYSPSGNFVACG 115 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--ce-------eEEecCceeEEEEEECCCCCeEEec
Confidence 34458999999999999994 7899999999999999965422 11 11222344555556654 568889
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+-|....+|++...+... . +. ....+.+|.+-+.|+.|-+| ..|+|+|.|.
T Consensus 116 GLdN~Csiy~ls~~d~~g-----~-------------------~~----v~r~l~gHtgylScC~f~dD-~~ilT~SGD~ 166 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG-----N-------------------VR----VSRELAGHTGYLSCCRFLDD-NHILTGSGDM 166 (343)
T ss_pred CcCceeEEEecccccccc-----c-------------------ce----eeeeecCccceeEEEEEcCC-CceEecCCCc
Confidence 999999999987432110 0 00 01123578999999999875 5688999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
+..+||+++++....+. +|.+.|.++.++| +++ +++|+.|+..++||+..+... ..+.+|...|+++.|.|+|
T Consensus 167 TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~----qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV----QTFEGHESDINSVRFFPSG 241 (343)
T ss_pred eEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCccee----EeecccccccceEEEccCC
Confidence 99999999999988885 8999999999999 665 899999999999999987544 4567899999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
.-+++|+.|+++|+||++.... .. +.....-...|++++|+ +.++..|..|.++.+||... .+.+..|.||.+.
T Consensus 242 ~afatGSDD~tcRlyDlRaD~~-~a-~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk--~e~vg~L~GHeNR 317 (343)
T KOG0286|consen 242 DAFATGSDDATCRLYDLRADQE-LA-VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK--GERVGVLAGHENR 317 (343)
T ss_pred CeeeecCCCceeEEEeecCCcE-Ee-eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc--cceEEEeeccCCe
Confidence 9999999999999999987542 22 22223344568899986 56899999999999999543 4557789999999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|.++..+|++ .-++|||+|.++|||.
T Consensus 318 vScl~~s~DG---------~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 318 VSCLGVSPDG---------MAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEEECCCC---------cEEEecchhHheeecC
Confidence 9999998775 4599999999999994
No 6
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=248.70 Aligned_cols=292 Identities=24% Similarity=0.369 Sum_probs=227.8
Q ss_pred eeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEe
Q 044557 11 CLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAH 85 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~ 85 (362)
.+++++||.+.|+.+++. |..|||||.|+.||+|+..... ..... ..+--.|+..|+++++.+ +.|++++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-s~~ck----~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-SWTCK----TVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-cEEEE----EeccccchheeeeeeecCCCcEEEEee
Confidence 567899999999999996 3489999999999999976411 11000 001123677899999864 5699999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.|.++.+|.-..++ +.. ..++.+|...|-|++|+++|++||+|+.|+.
T Consensus 81 FD~t~~Iw~k~~~e-----fec---------------------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKS 128 (312)
T KOG0645|consen 81 FDATVVIWKKEDGE-----FEC---------------------------VATLEGHENEVKCVAWSASGNYLATCSRDKS 128 (312)
T ss_pred ccceEEEeecCCCc-----eeE---------------------------EeeeeccccceeEEEEcCCCCEEEEeeCCCe
Confidence 99999999754322 111 2234589999999999999999999999999
Q ss_pred EEEEECCC---ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 166 IKIWRTSD---FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 166 i~iwd~~~---~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
|-||.+.. .++...+ ..|++.|..+.|+|... |+++++|++||+|....+ .--.+...+.+|...|.+++|.|.
T Consensus 129 VWiWe~deddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d-ddW~c~~tl~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD-DDWECVQTLDGHENTVWSLAFDNI 206 (312)
T ss_pred EEEEEecCCCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecCC-CCeeEEEEecCccceEEEEEecCC
Confidence 99999874 3455544 58999999999999765 889999999999987742 233456677889999999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCC----Cceeeee-EecC
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGID----RNYTCLA-VLEG 316 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~----~~~~~~~-~l~~ 316 (362)
|..|++++.|+++++|-+...- -..|...+..+++....|+|++.|+.|+++.... +.+..+. .-..
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~~--------~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~a 278 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTDL--------SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGA 278 (312)
T ss_pred CceEEEecCCcceEeeeeccCc--------chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcc
Confidence 9999999999999999765311 1237788888999877999999999999997432 2222222 3457
Q ss_pred CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 317 HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 317 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|...|+++++.|... ..|+|||+||.|++|.+.
T Consensus 279 He~dVNsV~w~p~~~--------~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 279 HEVDVNSVQWNPKVS--------NRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccccceEEEcCCCC--------CceeecCCCceEEEEEec
Confidence 999999999987322 368999999999999875
No 7
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.1e-39 Score=268.73 Aligned_cols=273 Identities=28% Similarity=0.481 Sum_probs=227.5
Q ss_pred CccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCC
Q 044557 18 HNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINN 97 (362)
Q Consensus 18 H~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~ 97 (362)
-.+.|.|+.++...+++|..|.||++||.++... ..++..|.+.|.|+.+....+++|+.|.+|++||+++
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c---------~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLEC---------LKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHH---------HHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccC
Confidence 4678999999999999999999999999876432 2234567889999998888899999999999999998
Q ss_pred CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceE-
Q 044557 98 QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC- 176 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~- 176 (362)
+++. .++.+|.+.|.-+.|+ ..+++++|.|.++++||+.....
T Consensus 267 ge~l----------------------------------~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 267 GEPL----------------------------------NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred Cchh----------------------------------hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH
Confidence 7742 2345799999999997 45899999999999999987642
Q ss_pred -EEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 177 -LESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 177 -~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
+..+..+|..+|+.+.|+.. .+++++.|.+|++|+..+.+ ++.++.+|+.+|.|+.+ .|+++++||.|++||
T Consensus 311 t~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTikvW~~st~e----fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIR 383 (499)
T KOG0281|consen 311 TLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTSTCE----FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIR 383 (499)
T ss_pred HHHHHHhhhhhheeeeccccc-eEEEecCCceEEEEecccee----eehhhhcccccceehhc--cCeEEEecCCCceEE
Confidence 22234589999999998854 68999999999999998875 56677899999988876 689999999999999
Q ss_pred EEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCc-------eeeeeEecCCCCcEEEEEeee
Q 044557 256 VWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRN-------YTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~-------~~~~~~l~~h~~~v~~~~~~~ 328 (362)
+||++.+. .+..++||...|.|+.|..+.+++|+.||+||+|+..... .-|+..+..|++.|..+.|..
T Consensus 384 lwdi~~G~----cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 384 LWDIECGA----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred EEeccccH----HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 99998754 3456889999999999999999999999999999964321 125667788999999999842
Q ss_pred cCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 329 DNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 329 ~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..|++.++|.+|-|||..
T Consensus 460 -----------fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 460 -----------FQIISSSHDDTILIWDFL 477 (499)
T ss_pred -----------eEEEeccCCCeEEEEEcC
Confidence 358899999999999983
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-38 Score=264.38 Aligned_cols=246 Identities=26% Similarity=0.448 Sum_probs=202.6
Q ss_pred eEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 63 IVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 63 ~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
.+..|.+.|.++.+.++ .|++|+.|.++|+||+.++.+. .+..+
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~----------------------------------~t~Kg 155 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL----------------------------------FTCKG 155 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc----------------------------------eeecC
Confidence 34557788999988875 5999999999999999765432 23347
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-----CC-cEEEEeCCCeEEEEeCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-----DG-DVYTGSADKKIKVWRRS 214 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-----~~-~~~s~~~dg~i~iw~~~ 214 (362)
|...|.|++|+|||+.||+|+.||.|++||..+++++..-..+|...|++++|.| +. .+++++.||.|+|||+.
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 9999999999999999999999999999999999887666679999999999965 33 48999999999999987
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC-------------------------------
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD------------------------------- 263 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~------------------------------- 263 (362)
.+ .....+.+|..+|+|+.|-.+ .+|++||.|++|++|+...+.
T Consensus 236 ~~----~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 236 LG----TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred Cc----eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence 65 345567899999999999754 589999999999999842100
Q ss_pred -------------------------Cc-------------------EEEEEeecCccceeEEEEEeCC--eEEEeeCCCc
Q 044557 264 -------------------------GN-------------------ILVVGALRGHTKSILCMAVVSD--LVCSGSADKT 297 (362)
Q Consensus 264 -------------------------~~-------------------~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~ 297 (362)
++ .+.+..+.||...|..+.|+|+ +++|+|-|+.
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 00 0012245689999999999987 8999999999
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
||+|+. +.++.+.+|.||-.+|..++++.| .++|+|||.|.++++|++..
T Consensus 391 VkLW~g--~tGk~lasfRGHv~~VYqvawsaD---------sRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 391 VKLWDG--RTGKFLASFRGHVAAVYQVAWSAD---------SRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred eeeeeC--CCcchhhhhhhccceeEEEEeccC---------ccEEEEcCCCceEEEEEeee
Confidence 999995 456779999999999999999754 36899999999999999864
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-38 Score=270.02 Aligned_cols=246 Identities=24% Similarity=0.378 Sum_probs=207.9
Q ss_pred ceeccceeeecccCccceeeeEec----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--
Q 044557 5 SVVDHHCLTTLKGHNSYVSSLALA----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-- 78 (362)
Q Consensus 5 ~~~~~~~~~tl~gH~~~V~~l~~~----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-- 78 (362)
+.++...+.+|+||++.|.++.|. +..+|||+.||++|+|++++.. ....+ ..|...|..+.+.+
T Consensus 203 ~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--~l~~l-------~gH~~RVs~VafHPsG 273 (459)
T KOG0272|consen 203 SVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--PLQDL-------EGHLARVSRVAFHPSG 273 (459)
T ss_pred ecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc--chhhh-------hcchhhheeeeecCCC
Confidence 556778899999999999999995 3479999999999999987632 11121 22456677777754
Q ss_pred ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 79 DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 79 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
.+|.+++.|.+-++||+.++.... .-.+|...|.+++|+|||.+++
T Consensus 274 ~~L~TasfD~tWRlWD~~tk~ElL----------------------------------~QEGHs~~v~~iaf~~DGSL~~ 319 (459)
T KOG0272|consen 274 KFLGTASFDSTWRLWDLETKSELL----------------------------------LQEGHSKGVFSIAFQPDGSLAA 319 (459)
T ss_pred ceeeecccccchhhcccccchhhH----------------------------------hhcccccccceeEecCCCceee
Confidence 569999999999999997654211 0137999999999999999999
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
|||-|..=||||+++++++-.+. +|..+|.+|+|+|+|+ ++||+.|++++|||+.-.. ....+..|.+-|+.|.
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~----~ly~ipAH~nlVS~Vk 394 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS----ELYTIPAHSNLVSQVK 394 (459)
T ss_pred ccCccchhheeecccCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeecccc----cceecccccchhhheE
Confidence 99999999999999999998776 7999999999999997 9999999999999997543 3566788999999999
Q ss_pred Eec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 238 LSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 238 ~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
|+| .|.+|+|+|.|+++++|...+- ..+..+.||.+.|.+++.+++ .++|+|.|++||+|.
T Consensus 395 ~~p~~g~fL~TasyD~t~kiWs~~~~----~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 395 YSPQEGYFLVTASYDNTVKIWSTRTW----SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecccCCeEEEEcccCcceeeecCCCc----ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999 7889999999999999987643 356788999999999998765 799999999999995
No 10
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.1e-36 Score=253.42 Aligned_cols=285 Identities=29% Similarity=0.445 Sum_probs=226.2
Q ss_pred CccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--Cc---eeEEEecCCcEEE
Q 044557 18 HNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--AD---KLFSAHQDHKIRV 92 (362)
Q Consensus 18 H~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~---~l~s~~~dg~i~~ 92 (362)
|.+.|.+|...+++|+||+.||++|+||..... ...+..|.+++.++.+. .. .+++++.|.++++
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~----------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKS----------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecCCce----------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 899999999999999999999999999975421 12233456677655432 22 3899999999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
|.++.++..... + + ...+|...|.+++..+++..+++||+|.+|+||+.+
T Consensus 174 w~~~~~~~~~~~------~----------------------~--~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 174 WKWNVGENKVKA------L----------------------K--VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE 223 (423)
T ss_pred EEecCchhhhhH------H----------------------h--HhcccccceeEEEecCCCCeEEeecccceeeecccC
Confidence 998765421100 0 0 012799999999999999999999999999999932
Q ss_pred C-------------------------ceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 173 D-------------------------FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 173 ~-------------------------~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
. +.++. ...+|+++|.+|.|++.+.+++++.|.+|+.||++++.....+.
T Consensus 224 ~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v-tl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~---- 298 (423)
T KOG0313|consen 224 TDEEDELESSSNRRRKKQKREKEGGTRTPLV-TLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT---- 298 (423)
T ss_pred CCccccccccchhhhhhhhhhhcccccCceE-EecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee----
Confidence 1 01122 23489999999999998889999999999999999987544332
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCC
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~ 304 (362)
.+..+++++++|...+|++|+.|..||+||-+.+.+.. ....+.||.+.|.++.+++. +|++||.|+++|+||..
T Consensus 299 -~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 299 -TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred -cCcceeEeecccccceeeecCCCCceeecCCCCCCCce-eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 35678999999999999999999999999999876655 45678899999999999864 89999999999999975
Q ss_pred CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 305 DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 305 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
.. ..++..+.+|.+.|-++.+.. +.+|+|||.|++|||+.-...+
T Consensus 377 S~-k~plydI~~h~DKvl~vdW~~----------~~~IvSGGaD~~l~i~~~~~~~ 421 (423)
T KOG0313|consen 377 ST-KAPLYDIAGHNDKVLSVDWNE----------GGLIVSGGADNKLRIFKGSPIT 421 (423)
T ss_pred cC-CCcceeeccCCceEEEEeccC----------CceEEeccCcceEEEecccccc
Confidence 43 236788999999999987742 2469999999999999876443
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-35 Score=265.58 Aligned_cols=326 Identities=22% Similarity=0.381 Sum_probs=231.8
Q ss_pred ceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--e
Q 044557 5 SVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--K 80 (362)
Q Consensus 5 ~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~ 80 (362)
+++++.+.+++.||.+.|.+|.|+ +++|++||.|.++|+|+++...... ...+..|+..|.+..+..+ .
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-------~~~l~gHkd~VvacfF~~~~~~ 203 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-------TYALNGHKDYVVACFFGANSLD 203 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-------eEeccCCCcceEEEEeccCcce
Confidence 789999999999999999999994 7899999999999999987543211 1223445666666655444 4
Q ss_pred eEEEecCCcEEEEecCCCCCCc--------------------ccc-----eee--eeccCCCchhhhh-ccc--------
Q 044557 81 LFSAHQDHKIRVWKINNQEPDH--------------------QKY-----TRL--ATLPTLGDRAIKL-LMP-------- 124 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~--------------------~~~-----~~~--~~~~~~~~~~~~~-~~~-------- 124 (362)
+++.+.||.+.+|......+.. ++. .+. ..+...+.+.... +.+
T Consensus 204 l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvg 283 (893)
T KOG0291|consen 204 LYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVG 283 (893)
T ss_pred EEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEE
Confidence 9999999999999876221100 000 000 0000000000000 000
Q ss_pred --cccceeeeeeeeEEeee----cCceeEEEEecCCCEEEEEECC-CcEEEEECCCceEEEeeeccCcccEEEEEEcCCC
Q 044557 125 --KNHVQIRRHKTCTWVHH----VDAVSALALTKDETLLYSVSWD-RTIKIWRTSDFKCLESITNAHDDAINAVALSDDG 197 (362)
Q Consensus 125 --~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~ 197 (362)
.+.+.+.........+. ..+|..++|+..|.+||.|+.. |.+-||+..+..-+-+. ++|...+.+++++|||
T Consensus 284 FssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSpDg 362 (893)
T KOG0291|consen 284 FSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSPDG 362 (893)
T ss_pred ecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECCCC
Confidence 00011111222222221 2467788888888888887654 68888887766544443 4899999999999999
Q ss_pred c-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-c
Q 044557 198 D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-H 275 (362)
Q Consensus 198 ~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h 275 (362)
+ +++|+.||+|||||..++- ++.++..|.+.|+.+.|+..|+.++++|.||+||.||+....+-. ++.. .
T Consensus 363 q~iaTG~eDgKVKvWn~~Sgf----C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR----Tft~P~ 434 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGF----CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR----TFTSPE 434 (893)
T ss_pred cEEEeccCCCcEEEEeccCce----EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee----eecCCC
Confidence 8 7899999999999988764 556778899999999999999999999999999999998655432 2222 1
Q ss_pred cceeEEEEEe--CCeEEEeeCCCc-EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 276 TKSILCMAVV--SDLVCSGSADKT-IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 276 ~~~v~~~~~~--~~~~~s~s~D~~-i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
.-+..|++.+ +++++.|+.|.- |.+|+. ++++.+..|.||.++|.+++|+|.++ .|+|||+|.+||
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~--qTGqllDiLsGHEgPVs~l~f~~~~~---------~LaS~SWDkTVR 503 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSV--QTGQLLDILSGHEGPVSGLSFSPDGS---------LLASGSWDKTVR 503 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEe--ecCeeeehhcCCCCcceeeEEccccC---------eEEeccccceEE
Confidence 2234566664 678899998875 999985 46788999999999999999987754 699999999999
Q ss_pred EEecc
Q 044557 353 VWQIS 357 (362)
Q Consensus 353 ~W~~~ 357 (362)
+||+-
T Consensus 504 iW~if 508 (893)
T KOG0291|consen 504 IWDIF 508 (893)
T ss_pred EEEee
Confidence 99984
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-36 Score=270.52 Aligned_cols=322 Identities=24% Similarity=0.434 Sum_probs=233.8
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc-------Ccee
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL-------ADKL 81 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-------~~~l 81 (362)
|++++.+|.+.|++|++. +.-++++|.|..|.+||+..... ....+. ...+.++... +..+
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~--l~~lp~--------ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK--LKTLPL--------YESLESVVRLREELGGKGEYI 253 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhh--hheech--------hhheeeEEEechhcCCcceEE
Confidence 899999999999999994 77899999999999999854332 111111 1122222222 2368
Q ss_pred EEEecCCcEEEEecCCCCCC-------cccceeeeeccCC-----------------------------Cchhhh--hcc
Q 044557 82 FSAHQDHKIRVWKINNQEPD-------HQKYTRLATLPTL-----------------------------GDRAIK--LLM 123 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~-------~~~~~~~~~~~~~-----------------------------~~~~~~--~~~ 123 (362)
++++.+|.+++|+....... .+........+.. .+.+.. ++.
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence 99999999999997654321 1111111111000 000000 000
Q ss_pred ----------ccccceeeee--eee-EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce----EEEeeeccCcc
Q 044557 124 ----------PKNHVQIRRH--KTC-TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK----CLESITNAHDD 186 (362)
Q Consensus 124 ----------~~~~~~~~~~--~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~h~~ 186 (362)
+.....+... ..+ -+.+|.+.|.++....+|-+|+|||.|+++++|.+++.. ++. ...+|+.
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a-~~~gH~~ 412 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA-QANGHTN 412 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh-hhccccc
Confidence 0001111110 111 245799999999977788899999999999999885443 222 2358999
Q ss_pred cEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcc-----eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 187 AINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKH-----SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 187 ~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
.|.+++++..+. |++++.|+++++|++...+... ....+...|...|++++++|+.+.++|||.|.+.++|++
T Consensus 413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 999999987764 8899999999999986522111 112345569999999999999999999999999999999
Q ss_pred cCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCC
Q 044557 260 EEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337 (362)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~ 337 (362)
+. ..+.+.+.||+..|.|+.|++. .++|+|.|++||||.+. .+.|+++|+||...|-.++|..++.
T Consensus 493 e~----~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is--~fSClkT~eGH~~aVlra~F~~~~~------ 560 (775)
T KOG0319|consen 493 EQ----LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS--TFSCLKTFEGHTSAVLRASFIRNGK------ 560 (775)
T ss_pred cC----ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec--cceeeeeecCccceeEeeeeeeCCc------
Confidence 73 3478899999999999999876 89999999999999964 5899999999999999999986543
Q ss_pred CceEEEecCCCCcEEEEeccc
Q 044557 338 TSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 338 ~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.|+|++.||.|+||++..
T Consensus 561 ---qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 561 ---QLISAGADGLIKLWNIKT 578 (775)
T ss_pred ---EEEeccCCCcEEEEeccc
Confidence 588999999999999864
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=247.34 Aligned_cols=288 Identities=23% Similarity=0.394 Sum_probs=227.2
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
++-++.+.++||.+.|.||+++ ..+|+||+.|++|+|||+.+.. +... +..|...+..+.++.. ++|
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~--Lklt-------ltGhi~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--LKLT-------LTGHIETVRGVAVSKRHPYLF 209 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe--EEEe-------ecchhheeeeeeecccCceEE
Confidence 4567889999999999999996 5799999999999999998753 2111 1224456666776653 699
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|+.|+.||++..+.. -.+.+|...|.|++.+|....|++|+.
T Consensus 210 s~gedk~VKCwDLe~nkvI----------------------------------R~YhGHlS~V~~L~lhPTldvl~t~gr 255 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVI----------------------------------RHYHGHLSGVYCLDLHPTLDVLVTGGR 255 (460)
T ss_pred EecCCCeeEEEechhhhhH----------------------------------HHhccccceeEEEeccccceeEEecCC
Confidence 9999999999999754311 012478899999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
|.++||||+++...+..+. +|..+|.++.+.| ++++++|+.|++|++||+..++.. ..+..|+..|.+++.+|.
T Consensus 256 Dst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~----~tlt~hkksvral~lhP~ 330 (460)
T KOG0285|consen 256 DSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM----ITLTHHKKSVRALCLHPK 330 (460)
T ss_pred cceEEEeeecccceEEEec-CCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee----EeeecccceeeEEecCCc
Confidence 9999999999998888775 8999999999886 557999999999999999887532 234568899999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-CeEEEeeCCCcEEEeeCCCC-ceeeeeEec--C-
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-DLVCSGSADKTIRIWRGIDR-NYTCLAVLE--G- 316 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~s~s~D~~i~~W~~~~~-~~~~~~~l~--~- 316 (362)
...++++|.|+ |+.|++..+. .+..+.+|..-|.+++... +++++|+..|.+-+||...+ +++..++.. |
T Consensus 331 e~~fASas~dn-ik~w~~p~g~----f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS 405 (460)
T KOG0285|consen 331 ENLFASASPDN-IKQWKLPEGE----FLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS 405 (460)
T ss_pred hhhhhccCCcc-ceeccCCccc----hhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCc
Confidence 99999999885 8999987543 3456889999999999864 59999999999999996432 222222211 1
Q ss_pred --CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 317 --HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 317 --h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
-...|.+..|...+ --|++|..|.+|++|.-
T Consensus 406 l~sEagI~as~fDktg---------~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTG---------SRLITGEADKTIKMYKE 438 (460)
T ss_pred cccccceeEEeecccC---------ceEEeccCCcceEEEec
Confidence 23457777775443 34889999999999975
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.6e-36 Score=271.17 Aligned_cols=204 Identities=22% Similarity=0.466 Sum_probs=181.9
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCC
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~ 215 (362)
++.+|.++|..+.|+|+.++|++||+|+++|+|.+.+..++-... +|..+|+++.|+|-|. |+|++.|++-++|..+.
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 356899999999999999999999999999999999999887775 9999999999999996 89999999999998776
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS 293 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s 293 (362)
.. ....+.+|-+.|.|+.|+|+..|+++||.|.+||+||..++. .+..+.||.++|.+++|++. +|+||+
T Consensus 525 ~~----PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~----~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 525 NK----PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN----SVRIFTGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred CC----chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc----EEEEecCCCCceEEEEEcCCCceEeecc
Confidence 43 344567899999999999999999999999999999998754 35567899999999999865 999999
Q ss_pred CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 294 ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 294 ~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
+|+.|++||+. .+..+..+.+|++.|.++.|+.++. .||+||.|++|++||+..+.
T Consensus 597 ed~~I~iWDl~--~~~~v~~l~~Ht~ti~SlsFS~dg~---------vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 597 EDGLIKIWDLA--NGSLVKQLKGHTGTIYSLSFSRDGN---------VLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred cCCcEEEEEcC--CCcchhhhhcccCceeEEEEecCCC---------EEEecCCCCeEEEEEchhhc
Confidence 99999999963 4567889999999999999987754 69999999999999996553
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-35 Score=265.57 Aligned_cols=289 Identities=26% Similarity=0.402 Sum_probs=236.6
Q ss_pred ccceeeecccCccceeeeEecC---cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCceeE
Q 044557 8 DHHCLTTLKGHNSYVSSLALAG---KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~~---~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l~ 82 (362)
..+....+-|.++.|.++.|-| +++|.++.-+.+|++++.+..+ .++..|...|.++.. .+..|+
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------~ii~GH~e~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC----------QIIPGHTEAVLSLDVWSSGDLLA 381 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce----------EEEeCchhheeeeeecccCcEEE
Confidence 4556667889999999999965 7999999999999998765432 255667888888873 344799
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s 161 (362)
+++.|.++++|++++....... .....+|...|.+++++..+ .+|+++|
T Consensus 382 t~sKD~svilWr~~~~~~~~~~------------------------------~a~~~gH~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLC------------------------------VAQANGHTNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred EecCCceEEEEEecCCcchhhh------------------------------hhhhcccccccceeeecccCccEEEEec
Confidence 9999999999999543321100 01124689999999997655 6899999
Q ss_pred CCCcEEEEECCCceE----E----EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc
Q 044557 162 WDRTIKIWRTSDFKC----L----ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~----~----~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
.|+++++|++...+. + +.....|...|++|+++|+.. ++||+.|++.+||+++.. .+..++.+|..+
T Consensus 432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~----~l~~vLsGH~RG 507 (775)
T KOG0319|consen 432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL----RLLGVLSGHTRG 507 (775)
T ss_pred CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc----eEEEEeeCCccc
Confidence 999999999876211 1 112357999999999999987 789999999999999843 467788999999
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceee
Q 044557 233 INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTC 310 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~ 310 (362)
|.++.|+|..+.++|+|.|++|++|.+.+.. .++++.||...|....|. +..++|++.||-||+|++. +..|
T Consensus 508 vw~V~Fs~~dq~laT~SgD~TvKIW~is~fS----ClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik--t~eC 581 (775)
T KOG0319|consen 508 VWCVSFSKNDQLLATCSGDKTVKIWSISTFS----CLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK--TNEC 581 (775)
T ss_pred eEEEEeccccceeEeccCCceEEEEEeccce----eeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc--chhh
Confidence 9999999999999999999999999998644 567899999999999985 4599999999999999974 4688
Q ss_pred eeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 311 LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 311 ~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+.+|.+|.+.||+++.++..+ +++||+.||.|.+|.
T Consensus 582 ~~tlD~H~DrvWaL~~~~~~~---------~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 582 EMTLDAHNDRVWALSVSPLLD---------MFVTGGGDGRIIFWK 617 (775)
T ss_pred hhhhhhccceeEEEeecCccc---------eeEecCCCeEEEEee
Confidence 999999999999999876542 589999999999996
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.3e-35 Score=249.63 Aligned_cols=289 Identities=23% Similarity=0.291 Sum_probs=230.6
Q ss_pred eecccCccceeeeEecC---cEEEEecCCCeEEEeecCCCCcccce--eeeccc--eeE-EeecceeEEEEEc--CceeE
Q 044557 13 TTLKGHNSYVSSLALAG---KFLYTGSSDNEVRSWDCNTFSSELDQ--EFLSNN--NIV-AVGKGAVKSLVVL--ADKLF 82 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~~---~~l~t~s~Dg~i~vWd~~~~~~~~~~--~~~~~~--~~~-~~~~~~v~~i~~~--~~~l~ 82 (362)
+.++ |..+|.+.+|.+ ..+++|+.|-+.|+|++......... .+.+.. .-. ......|++++++ ++.|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3344 999999999963 37999999999999998631111100 000000 000 0113578899998 45699
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+|+.||.+++|+..... ..++..|.++|.++.|+..|++|++++-
T Consensus 252 tG~~~G~~riw~~~G~l-----------------------------------~~tl~~HkgPI~slKWnk~G~yilS~~v 296 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNL-----------------------------------ISTLGQHKGPIFSLKWNKKGTYILSGGV 296 (524)
T ss_pred EeecCcEEEEEecCchh-----------------------------------hhhhhccCCceEEEEEcCCCCEEEeccC
Confidence 99999999999875421 1123469999999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
|+++.+||..++...+.+. -|+.+-..|.|-.+..+++++.|+.|+++.+....+. .++.+|.++|.++.|.|.|
T Consensus 297 D~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~----~t~~GH~g~V~alk~n~tg 371 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQFE-FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPV----KTFIGHHGEVNALKWNPTG 371 (524)
T ss_pred CccEEEEeccCceEEEeee-eccCCccceEEecCceEeecCCCceEEEEEecCCCcc----eeeecccCceEEEEECCCC
Confidence 9999999999888877765 4777767889988888999999999999998765443 3456799999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-----------CeEEEeeCCCcEEEeeCCCCceeee
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-----------DLVCSGSADKTIRIWRGIDRNYTCL 311 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----------~~~~s~s~D~~i~~W~~~~~~~~~~ 311 (362)
..|+++|.|+++++|...... ....+.+|.+.|..+.|+| ..+++++.|++|++||+. .+.++
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~----~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~--~gv~i 445 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSN----SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE--SGVPI 445 (524)
T ss_pred ceEEEecCCCeeEeeecCCCc----chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc--CCcee
Confidence 999999999999999975433 3456788999999888864 279999999999999975 46789
Q ss_pred eEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 312 AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 312 ~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++|..|..+|++++|+|++ .+||||+.||.|.+|++.
T Consensus 446 ~~f~kH~~pVysvafS~~g---------~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 446 HTLMKHQEPVYSVAFSPNG---------RYLASGSLDGCVHIWSTK 482 (524)
T ss_pred EeeccCCCceEEEEecCCC---------cEEEecCCCCeeEecccc
Confidence 9999999999999998765 579999999999999884
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-35 Score=246.30 Aligned_cols=292 Identities=25% Similarity=0.361 Sum_probs=226.4
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCc-ccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSS-ELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
+.+-.++|..|.++|+-+.|+ |+||||+|.|.|..+|++..... ++. ..+..|..+|..+.+++| +|+
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-------~tlvgh~~~V~yi~wSPDdryLl 285 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK-------KTLVGHSQPVSYIMWSPDDRYLL 285 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee-------eeeecccCceEEEEECCCCCeEE
Confidence 344556788999999999994 89999999999999999754321 111 122345678888999875 599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|..+++||+.+++.... .+ .+|...+.+++|.|||..+++|+.
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~-------y~--------------------------~~~~~S~~sc~W~pDg~~~V~Gs~ 332 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHL-------YP--------------------------SGLGFSVSSCAWCPDGFRFVTGSP 332 (519)
T ss_pred ecCchHheeeccCCcchhhhh-------cc--------------------------cCcCCCcceeEEccCCceeEecCC
Confidence 999999999999987653110 00 123457889999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
|+.+..||+... .+..+.......|.++++.+||+ +++.+.|..|++|+.++..... +..-..+|+++.+|.|
T Consensus 333 dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-----lise~~~its~~iS~d 406 (519)
T KOG0293|consen 333 DRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-----LISEEQPITSFSISKD 406 (519)
T ss_pred CCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----cccccCceeEEEEcCC
Confidence 999999998753 33444433446799999999997 8888899999999987643321 1223568999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeE--EEEEe--C-CeEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSIL--CMAVV--S-DLVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~--~~~~~--~-~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
|+++++.-.+..+++||+++. .++..+.||...-. .-+|. . .+++|||+|+.|+||+. ..++++.+|.|
T Consensus 407 ~k~~LvnL~~qei~LWDl~e~----~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr--~sgkll~~LsG 480 (519)
T KOG0293|consen 407 GKLALVNLQDQEIHLWDLEEN----KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR--ISGKLLAVLSG 480 (519)
T ss_pred CcEEEEEcccCeeEEeecchh----hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc--cCCceeEeecC
Confidence 999999999999999999842 24556778876532 22343 2 49999999999999984 45678999999
Q ss_pred CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 317 HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 317 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
|+..|+++++.|.. ..++||||+||+||||-...+
T Consensus 481 Hs~~vNcVswNP~~--------p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 481 HSKTVNCVSWNPAD--------PEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CcceeeEEecCCCC--------HHHhhccCCCCeEEEecCCcc
Confidence 99999999998753 257999999999999988755
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=251.24 Aligned_cols=279 Identities=23% Similarity=0.359 Sum_probs=225.0
Q ss_pred ccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEe
Q 044557 19 NSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWK 94 (362)
Q Consensus 19 ~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~ 94 (362)
..+|..|.| .|+.|+||+..|.+-+|+..+... .-++..|..+|+++.++.+ .+++|+.+|.|++|+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF---------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWq 166 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF---------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQ 166 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH---------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecc
Confidence 457888888 478999999999999998643221 1123356788999988654 599999999999998
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCc
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 174 (362)
.+..... . ...+|...|++++|+|++..|++||+||+|+|||....
T Consensus 167 pnmnnVk-------------------~---------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 167 PNMNNVK-------------------I---------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred cchhhhH-------------------H---------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 6532210 0 00146689999999999999999999999999999877
Q ss_pred eEEEeeeccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc
Q 044557 175 KCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 175 ~~~~~~~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~ 253 (362)
+....+ .+|.-.|.++.|+|.. .+++++.|..|++||..++.+ +..+..|+..|..+.|+|++.+|+++|.|..
T Consensus 213 kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c----l~tlh~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 213 KEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC----LATLHGHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred chhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcch----hhhhhhccceEEEEEEcCCCCeeEEccCCce
Confidence 765555 5899999999999975 588999999999999998864 4456789999999999999999999999999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
++++|++.-+ .+..+++|.+.|.++.|.+ +++.+|+.||.|..|.+... ......-.+|...|++++++|
T Consensus 288 ~kv~DiR~mk----El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~~i~~AHd~~iwsl~~hP-- 360 (464)
T KOG0284|consen 288 CKVFDIRTMK----ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLGEIPPAHDGEIWSLAYHP-- 360 (464)
T ss_pred EEEEehhHhH----HHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc-ccccCCCcccccceeeeeccc--
Confidence 9999998422 2446789999999998864 58999999999999986421 122223358999999998864
Q ss_pred CccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 331 DRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 331 ~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
-|++|++||.|.++|+|.-..|
T Consensus 361 -------lGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 361 -------LGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred -------cceeEeecCCCcceeeeccCCC
Confidence 4689999999999999987766
No 19
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.3e-36 Score=250.66 Aligned_cols=232 Identities=31% Similarity=0.511 Sum_probs=199.2
Q ss_pred cceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeE
Q 044557 68 KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSA 147 (362)
Q Consensus 68 ~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 147 (362)
...|.|+....+++++|..|.+|++||.+..... ..+.+|++.|.|
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~----------------------------------~~L~GHtGSVLC 242 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECL----------------------------------KILTGHTGSVLC 242 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHH----------------------------------HhhhcCCCcEEe
Confidence 3467788888888999999999999997643210 112479999999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
+.|. .+.+++||.|.+|+|||++++++++++. .|.++|..+.|+ +|.+++++.|.+|.+||+.+.. ..++-..+.
T Consensus 243 Lqyd--~rviisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps-~it~rrVLv 317 (499)
T KOG0281|consen 243 LQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPT-DITLRRVLV 317 (499)
T ss_pred eecc--ceEEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEe-CCEEEEecCCceeEEEeccCch-HHHHHHHHh
Confidence 9985 5699999999999999999999999886 799999999998 5789999999999999998754 334556788
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCc
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~ 307 (362)
+|...|+.+.|+ .++++++|.|.+|++|+..+.+ .+.++.||...|.|+.+.+.++++||.|.+||+|++. .
T Consensus 318 GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e----fvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~--~ 389 (499)
T KOG0281|consen 318 GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE----FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE--C 389 (499)
T ss_pred hhhhheeeeccc--cceEEEecCCceEEEEecccee----eehhhhcccccceehhccCeEEEecCCCceEEEEecc--c
Confidence 999999999984 5799999999999999987643 4667899999999999999999999999999999965 4
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.|+..|+||.+-|.++.|.. +-|+||+.||+||+||+.
T Consensus 390 G~cLRvLeGHEeLvRciRFd~-----------krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFDN-----------KRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred cHHHHHHhchHHhhhheeecC-----------ceeeeccccceEEEEecc
Confidence 688999999999999999943 248999999999999985
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-34 Score=239.05 Aligned_cols=285 Identities=24% Similarity=0.394 Sum_probs=234.8
Q ss_pred ceeeecccCccceeeeEecCc--EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALAGK--FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~~~--~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~ 85 (362)
.+...+.||..+|+.+-+.+. .+++++.|++|++||.++++. +.. +..|...+..+.+. +..+++++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~-------LrGHt~sv~di~~~a~Gk~l~tcS 169 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERS-------LRGHTDSVFDISFDASGKYLATCS 169 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhh-------hhccccceeEEEEecCccEEEecC
Confidence 455567899999999999654 678889999999999987653 211 22345557777664 45699999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.|-.+++||.+... .+ .....+|...|.+++|-|.|.++++++.|.+
T Consensus 170 sDl~~~LWd~~~~~------~c---------------------------~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFF------RC---------------------------IKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred CccchhheeHHHHH------HH---------------------------HHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 99999999975421 00 0122468889999999999999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC---
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD--- 241 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--- 241 (362)
|+.|++.++-|+.++. +|.+.|..++.+.||. +++++.|.+|++|-+.+.. ....+..|.-+|-+++|.|.
T Consensus 217 ik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~----~k~~lR~hEh~vEci~wap~~~~ 291 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ----CKAELREHEHPVECIAWAPESSY 291 (406)
T ss_pred eeEEecccceeEEecc-CchHhEEEEEecCCeeEEEecCCCceEEEEEeccch----hhhhhhccccceEEEEecccccC
Confidence 9999999999999986 8999999999999998 6789999999999887764 33456789999999999862
Q ss_pred ------------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCc
Q 044557 242 ------------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 242 ------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~ 307 (362)
++++.+++.|++|++||+..+. .+-++.||...|..++|+ +.+|+|+..|+++++||+. +
T Consensus 292 ~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~----cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~--~ 365 (406)
T KOG0295|consen 292 PSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM----CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK--N 365 (406)
T ss_pred cchhhccCCCCCccEEEeecccceEEEEeccCCe----EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec--c
Confidence 2599999999999999998753 455788999999999998 4599999999999999964 5
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+|.+++..|..-|+++.|..+. .+++|||-|.++++|..
T Consensus 366 ~~cmk~~~ah~hfvt~lDfh~~~---------p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 LQCMKTLEAHEHFVTSLDFHKTA---------PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeeccCCCcceeEEEecCCCC---------ceEEeccccceeeeeec
Confidence 68899999999999999996442 37999999999999975
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.7e-34 Score=228.01 Aligned_cols=207 Identities=29% Similarity=0.524 Sum_probs=184.9
Q ss_pred EeeecCceeEEEEecC-CCEEEEEECCCcEEEEECCC---ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEe
Q 044557 138 WVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWRTSD---FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWR 212 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~---~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~ 212 (362)
..+|.+++-.++|+|. |..||+||.|+.||||+... ..+...+..+|...|++++|+|.|+ |++++-|.++.||.
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~ 89 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWK 89 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEee
Confidence 4578999999999998 88999999999999999884 5677777788999999999999998 78999999999998
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEE
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVC 290 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~ 290 (362)
-..+. ......+++|.+.|.+++|+++|.+||+++.|+.|-+|...+ ..++.....+.+|++.|.-+.|.| ++|+
T Consensus 90 k~~~e--fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de-ddEfec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 90 KEDGE--FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE-DDEFECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred cCCCc--eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC-CCcEEEEeeeccccccccEEEEcCCcceeE
Confidence 76543 456778899999999999999999999999999999999884 445667888999999999999987 6999
Q ss_pred EeeCCCcEEEeeCC-CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 291 SGSADKTIRIWRGI-DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 291 s~s~D~~i~~W~~~-~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|+|.|.+||+|+-. ...+.|+++|.+|.+.|++++|.+.+++ |+|++.|++++||.+
T Consensus 167 S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r---------l~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR---------LVSCSDDGTVSIWRL 224 (312)
T ss_pred EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce---------EEEecCCcceEeeee
Confidence 99999999999866 6778999999999999999999876643 899999999999983
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.1e-33 Score=240.40 Aligned_cols=331 Identities=23% Similarity=0.362 Sum_probs=226.8
Q ss_pred ecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC--
Q 044557 14 TLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD-- 87 (362)
Q Consensus 14 tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d-- 87 (362)
.+.+|...++-..+ +|.|+|+|+..|+|||||....+-.+..++ ..-.++|..|.+..+ +++..+..
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef-------~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEF-------QVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeee-------eecccccccceeCCCCcEEEEEecCcc
Confidence 35577776666666 578999999999999999754322222222 123467777777654 45555533
Q ss_pred --CcEEEEecCCCCCC-cccceeeeeccCCCchhhhhccccc--cceeeeeeee----EEeeecCceeEEEEecCCCEEE
Q 044557 88 --HKIRVWKINNQEPD-HQKYTRLATLPTLGDRAIKLLMPKN--HVQIRRHKTC----TWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 88 --g~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
|.+.+||.-+.-.. ......+....-...+......... .+.+...... +...|..-|.|+.|+|||.+|+
T Consensus 127 rfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 127 RFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred ceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 45777775322110 0000111111111111112211111 1122222111 2245888999999999999999
Q ss_pred EEECCCcEEEEECCCceEEEeee--ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee-------------
Q 044557 159 SVSWDRTIKIWRTSDFKCLESIT--NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL------------- 222 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~--~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~------------- 222 (362)
+++.||+|.+||-.+++.+..+. .+|.+.|.+++|+||+. +++++.|.++||||+.+.+...++
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence 99999999999999988777664 47999999999999996 999999999999998765322211
Q ss_pred --------------------------ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC------------
Q 044557 223 --------------------------VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG------------ 264 (362)
Q Consensus 223 --------------------------~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~------------ 264 (362)
...+.+|+..|+++..+||+++|++|+.||.|.-|+..++..
T Consensus 287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 234578999999999999999999999999999998421000
Q ss_pred --------------------------------------------------------------------------------
Q 044557 265 -------------------------------------------------------------------------------- 264 (362)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (362)
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~ 446 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES 446 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence
Q ss_pred -------------------cE----------EEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeE
Q 044557 265 -------------------NI----------LVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 265 -------------------~~----------~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~ 313 (362)
+. .....+..|.+.|++++++++ +|+++...+.|.+|+...+.. ....
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-~~~~ 525 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-KTNR 525 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-ecce
Confidence 00 000012237778899999876 899999999999999755443 2334
Q ss_pred ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCcc
Q 044557 314 LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLV 361 (362)
Q Consensus 314 l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~~ 361 (362)
..=|...|.+++|+|+. .++||||.|-+|.||++..|+.
T Consensus 526 w~FHtakI~~~aWsP~n---------~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 526 WAFHTAKINCVAWSPNN---------KLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred eeeeeeeEEEEEeCCCc---------eEEEeccccceEEEEEccChhh
Confidence 44599999999998875 4699999999999999999975
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-32 Score=239.21 Aligned_cols=329 Identities=22% Similarity=0.321 Sum_probs=238.7
Q ss_pred ceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--e
Q 044557 5 SVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--K 80 (362)
Q Consensus 5 ~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~ 80 (362)
|=|++|.-.+++.|..-|.++.++ |.+++|.|.||+|.+||-.+.+ +..++.. ...|++.+.++.+++| +
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge--~vg~l~~----~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE--KVGELED----SDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc--EEEEecC----CCCccccEEEEEECCCCce
Confidence 447888888999999999999994 8899999999999999977643 3333321 1246889999999976 5
Q ss_pred eEEEecCCcEEEEecCCCCCCcccc-------eeeeeccCCCchhhhhccccccceeeee----eeeEEeeecCceeEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKY-------TRLATLPTLGDRAIKLLMPKNHVQIRRH----KTCTWVHHVDAVSALA 149 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~ 149 (362)
+++++.|.++++||+.......... ..+..+-. .+..+. +...+...+.+. ....+.+|...|++++
T Consensus 250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lIt-VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt 327 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLIT-VSLSGTINYLNPSDPSVLKVISGHNKSITALT 327 (603)
T ss_pred EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEE-EEcCcEEEEecccCCChhheecccccceeEEE
Confidence 9999999999999997654211000 00000000 000000 000111111111 2234568999999999
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEe-----------ee--------------------c------cC--------
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLES-----------IT--------------------N------AH-------- 184 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-----------~~--------------------~------~h-------- 184 (362)
.+|++++|++|+.||.|.-|+..++..-+. +. . .+
T Consensus 328 v~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 328 VSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred EcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 999999999999999999999876432110 00 0 00
Q ss_pred -----------------------------------cccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc
Q 044557 185 -----------------------------------DDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER 228 (362)
Q Consensus 185 -----------------------------------~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 228 (362)
.....+++++|++. ++.|+.|++|+||.+..+.... ...+..
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e--e~~~~~ 485 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE--EAKLLE 485 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc--eeeeec
Confidence 00134567777776 6778899999999887654221 223456
Q ss_pred cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCC
Q 044557 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDR 306 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~ 306 (362)
|.++|++++||||+.+|+++...+.+.+||+.+.+. ....+..|+.+|.|++|+|+ ++||||-|-+|.+|.+..
T Consensus 486 h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~---~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k- 561 (603)
T KOG0318|consen 486 HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV---KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK- 561 (603)
T ss_pred ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce---ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC-
Confidence 999999999999999999999999999999987543 34556679999999999986 899999999999999754
Q ss_pred ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 307 NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 307 ~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..+.+....+|...|+.++|..+ ..|+|.+.|..||+|++.
T Consensus 562 P~~~i~iknAH~~gVn~v~wlde----------~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 562 PAKHIIIKNAHLGGVNSVAWLDE----------STVVSSGQDANIKVWNVT 602 (603)
T ss_pred hhhheEeccccccCceeEEEecC----------ceEEeccCcceeEEeccc
Confidence 34447778899999999999643 358899999999999985
No 24
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=228.65 Aligned_cols=286 Identities=25% Similarity=0.382 Sum_probs=224.1
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~ 86 (362)
.+-.+.||.+.|..+.|. |..|||||.|..|.+|+...... +...+..|.+.|..+.+..+ .+++++.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--------N~~~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--------NFWVLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--------ceeeeccccceeEeeeeccCCCEEEEecC
Confidence 344578999999999994 78999999999999999643221 22344567888888887655 4999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCc
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRT 165 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~ 165 (362)
|.+|+.||.++++... ....|.+-|.++..+.-| .++.+++.|++
T Consensus 111 Dk~v~~wD~~tG~~~r----------------------------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIR----------------------------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGT 156 (338)
T ss_pred CceEEEEecccceeee----------------------------------hhccccceeeecCccccCCeEEEecCCCce
Confidence 9999999998765211 112466666777644434 46778999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCE
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 244 (362)
+++||+++..+++++. ....++++.|.+++. +.+|+-|+.|++||+.... ....+.+|..+|+.+..+|+|.+
T Consensus 157 ~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~gs~ 230 (338)
T KOG0265|consen 157 LKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYGSF 230 (338)
T ss_pred EEEEeecccchhhccc--cceeEEEEEecccccceeeccccCceeeeccccCc----ceEEeecccCceeeEEeccCCCc
Confidence 9999999988887764 345789999998875 9999999999999997654 34567899999999999999999
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeecCccce----eEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS----ILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
+.+-+.|+++++||++..-+....+..+.+|... .+..+|+++ .+-.||.|+.+.+||...+ ..+..|-||.
T Consensus 231 llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r--~~lyklpGh~ 308 (338)
T KOG0265|consen 231 LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR--RILYKLPGHY 308 (338)
T ss_pred cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc--cEEEEcCCcc
Confidence 9999999999999998654444445556665432 355667654 7889999999999995433 4577899999
Q ss_pred CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 319 GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
..|++++|+|.. .+|.|+|.|.+|.+=+
T Consensus 309 gsvn~~~Fhp~e---------~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 309 GSVNEVDFHPTE---------PIILSCSSDKTIYLGE 336 (338)
T ss_pred eeEEEeeecCCC---------cEEEEeccCceeEeec
Confidence 999999998764 4788999999997643
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.4e-35 Score=250.42 Aligned_cols=292 Identities=19% Similarity=0.301 Sum_probs=229.6
Q ss_pred eeccceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--e
Q 044557 6 VVDHHCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--K 80 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~ 80 (362)
+++.+.+++|.||+..|+++.|. +.+|++|+.|+.|+||++-. ...+...+ ..|..+|..+.++.+ .
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf-------~gH~k~Vrd~~~s~~g~~ 272 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTF-------KGHRKPVRDASFNNCGTS 272 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhh-------hcchhhhhhhhccccCCe
Confidence 45677899999999999999984 67999999999999999754 22233333 336678888888754 5
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYS 159 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s 159 (362)
+++++.|+.|++||++++.... .......+.|+.|+|++ +.|++
T Consensus 273 fLS~sfD~~lKlwDtETG~~~~-----------------------------------~f~~~~~~~cvkf~pd~~n~fl~ 317 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVLS-----------------------------------RFHLDKVPTCVKFHPDNQNIFLV 317 (503)
T ss_pred eeeeecceeeeeeccccceEEE-----------------------------------EEecCCCceeeecCCCCCcEEEE
Confidence 9999999999999998765210 01122357899999999 88999
Q ss_pred EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 160 VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
|+.|+.|+.||+++++.++++. .|-++|..+.|-++|+ +++.+.|++++||+.......+ .+.....| ...++..
T Consensus 318 G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik-~i~~~~~h--smP~~~~ 393 (503)
T KOG0282|consen 318 GGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK-NIADPEMH--TMPCLTL 393 (503)
T ss_pred ecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch-hhcchhhc--cCcceec
Confidence 9999999999999999888775 6889999999999996 9999999999999987664332 22222234 3557889
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee--EEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEe
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--LCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l 314 (362)
+|++.+++.-+.|+.|.+|.+...- .......++||...- ..+.|+++ +|++|+.||.+.+||.. +.+.+..+
T Consensus 394 ~P~~~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk--t~kl~~~l 470 (503)
T KOG0282|consen 394 HPNGKWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK--TTKLVSKL 470 (503)
T ss_pred CCCCCeehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeech--hhhhhhcc
Confidence 9999999999999999999875321 122234567776443 45567765 99999999999999953 45668889
Q ss_pred cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 315 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
.+|.+.+..+.|+|.... -+|++|+||.|++|+
T Consensus 471 kah~~~ci~v~wHP~e~S--------kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 KAHDQPCIGVDWHPVEPS--------KVATCGWDGLIKIWD 503 (503)
T ss_pred ccCCcceEEEEecCCCcc--------eeEecccCceeEecC
Confidence 999999999999987532 489999999999996
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.1e-32 Score=268.91 Aligned_cols=292 Identities=15% Similarity=0.254 Sum_probs=215.6
Q ss_pred ecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeEEEecCC
Q 044557 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDH 88 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg 88 (362)
.+.+|...|.+++|+ ++++|||+.|++|+|||++......... ........+...+.++.+.+ ..+++++.||
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI--HYPVVELASRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc--ccceEEecccCceeeEEeccCCCCEEEEEeCCC
Confidence 355699999999995 7899999999999999975421100000 00000111234566666643 5699999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEECCCcEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDRTIK 167 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~ 167 (362)
+|++||+..+.. ...+.+|.+.|.+++|+| ++.+|++|+.|+.|+
T Consensus 556 ~v~lWd~~~~~~----------------------------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~ 601 (793)
T PLN00181 556 VVQVWDVARSQL----------------------------------VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK 601 (793)
T ss_pred eEEEEECCCCeE----------------------------------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE
Confidence 999999864321 112246889999999996 788999999999999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEc-CCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALS-DDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~-~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
+||++++.++..+. +...+.++.|+ +++. +++|+.||.|++||+..... ....+.+|...|.++.|. ++.+|
T Consensus 602 iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~-~~~~l 675 (793)
T PLN00181 602 LWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTL 675 (793)
T ss_pred EEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEe-CCCEE
Confidence 99999988877765 33578999995 4565 88999999999999976532 122345799999999997 78899
Q ss_pred EEEcCCCcEEEEeccCCCC--cEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeee----------
Q 044557 246 YSGACDRSIIVWEKEEDDG--NILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCL---------- 311 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~---------- 311 (362)
++++.|++|++||+..... ....+..+.+|...+.++++++ .++++|+.|+.|++|+.........
T Consensus 676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~ 755 (793)
T PLN00181 676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS 755 (793)
T ss_pred EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence 9999999999999874311 1123556889999888888864 4999999999999998532211100
Q ss_pred -eEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 312 -AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 312 -~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.....|...|.+++|++++ .+|++|+.||+|+||++
T Consensus 756 ~~~~~~~~~~V~~v~ws~~~---------~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 756 GLEVDDASQFISSVCWRGQS---------STLVAANSTGNIKILEM 792 (793)
T ss_pred ccccCCCCcEEEEEEEcCCC---------CeEEEecCCCcEEEEec
Confidence 0123466789999997654 46899999999999997
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=254.82 Aligned_cols=289 Identities=28% Similarity=0.501 Sum_probs=226.4
Q ss_pred eeeecccC-ccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 11 CLTTLKGH-NSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 11 ~~~tl~gH-~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
+..++.+| ...|.++.|+ |+++++++.|+.+++|+......... ..+..|...|..+.+.++ .+++++
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~-------~~l~~h~~~v~~~~fs~d~~~l~s~s 222 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLL-------RELSGHTRGVSDVAFSPDGSYLLSGS 222 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhh-------ccccccccceeeeEECCCCcEEEEec
Confidence 36667665 7889998884 88999999999999999844321011 111345667888888765 599999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.|++|++||+.... ....++.+|...|.+++|+|+++++++|+.|++
T Consensus 223 ~D~tiriwd~~~~~---------------------------------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDG---------------------------------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred CCceEEEeeccCCC---------------------------------eEEEEecCCCCceEEEEecCCCCEEEEecCCCc
Confidence 99999999983221 012234579999999999999999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccc--ceeEEEEecCC
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS--GINALALSCDG 242 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~--~v~~i~~s~~~ 242 (362)
|+|||++++++...+. +|.+.|.+++|++++. +++++.|+.|++||+.++... +...+..+.. +++++.|+|++
T Consensus 270 vriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 270 VRIWDVRTGECVRKLK-GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNG 346 (456)
T ss_pred EEEEeccCCeEEEeee-ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCC
Confidence 9999999999999886 8999999999999997 778899999999999987632 2223334433 59999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE---EEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM---AVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~---~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
.+|++++.|+++++||+.... ......+|...+.|+ ... +.++++|+.|+.|++|+... ...+..+.+|
T Consensus 347 ~~ll~~~~d~~~~~w~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s--~~~~~~l~~h 420 (456)
T KOG0266|consen 347 KYLLSASLDRTLKLWDLRSGK----SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS--GGILQRLEGH 420 (456)
T ss_pred cEEEEecCCCeEEEEEccCCc----ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc--cchhhhhcCC
Confidence 999999999999999998654 344566777754444 222 34899999999999999643 4557789999
Q ss_pred -CCcEEEEEeeecCCccCCCCCceEEEecC--CCCcEEEEecc
Q 044557 318 -RGPVKCLAAAIDNDRCDSSDTSYLVCSGS--LDCDIKVWQIS 357 (362)
Q Consensus 318 -~~~v~~~~~~~~~~~~~~~~~~~~l~s~s--~D~~i~~W~~~ 357 (362)
...|..+++++. ..++++++ .|+.|++|..+
T Consensus 421 ~~~~~~~~~~~~~---------~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 421 SKAAVSDLSSHPT---------ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCceeccccCCC---------cCeeeecCcCCCceEEEecCC
Confidence 888888777544 45788887 79999999875
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1e-31 Score=234.12 Aligned_cols=281 Identities=36% Similarity=0.570 Sum_probs=221.9
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD 87 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d 87 (362)
+++|++|.++|.++.++ +++|++++.||.|++|++..... .. ....+...+..+.+.++ .+++++.|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~~ 72 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--LR-------TLKGHTGPVRDVAASADGTYLASGSSD 72 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--EE-------EEecCCcceeEEEECCCCCEEEEEcCC
Confidence 56789999999999995 58999999999999999865321 11 11223445556666654 68999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
+.|++|++...... ..+..|...+.++.++|+++++++++.|+.|+
T Consensus 73 ~~i~i~~~~~~~~~----------------------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 118 (289)
T cd00200 73 KTIRLWDLETGECV----------------------------------RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118 (289)
T ss_pred CeEEEEEcCcccce----------------------------------EEEeccCCcEEEEEEcCCCCEEEEecCCCeEE
Confidence 99999998753210 11224667899999999999999988899999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCcEEE-EeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDVYT-GSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY 246 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 246 (362)
+||+++++....+. .|...+.+++|+|++.+++ ++.||.|++||+..+.... .+..|...+.++.|+|++..++
T Consensus 119 ~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~ 193 (289)
T cd00200 119 VWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA----TLTGHTGEVNSVAFSPDGEKLL 193 (289)
T ss_pred EEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce----eEecCccccceEEECCCcCEEE
Confidence 99999888777665 6888999999999887555 4459999999997654332 3346778999999999999999
Q ss_pred EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEE
Q 044557 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~ 324 (362)
+++.|+.|++||..... ....+..|...+.++.+.+ .++++++.|+.|++|+... ......+.+|...|.++
T Consensus 194 ~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~--~~~~~~~~~~~~~i~~~ 267 (289)
T cd00200 194 SSSSDGTIKLWDLSTGK----CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT--GECVQTLSGHTNSVTSL 267 (289)
T ss_pred EecCCCcEEEEECCCCc----eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC--ceeEEEccccCCcEEEE
Confidence 99999999999997532 3344557888999999986 3777777899999999643 45677788999999999
Q ss_pred EeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 325 AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+|++++ .+|++++.|+.|++|+
T Consensus 268 ~~~~~~---------~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 268 AWSPDG---------KRLASGSADGTIRIWD 289 (289)
T ss_pred EECCCC---------CEEEEecCCCeEEecC
Confidence 998653 4689999999999996
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-34 Score=238.33 Aligned_cols=246 Identities=26% Similarity=0.478 Sum_probs=205.0
Q ss_pred eeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--Ccee
Q 044557 6 VVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKL 81 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l 81 (362)
+.+.++.++|+||.+.|.+|+|+ |+++||+|.|-.+++||..+... . .+....|+..|+++.+. ++.+
T Consensus 137 ~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~-c-------~ks~~gh~h~vS~V~f~P~gd~i 208 (406)
T KOG0295|consen 137 TETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR-C-------IKSLIGHEHGVSSVFFLPLGDHI 208 (406)
T ss_pred ccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH-H-------HHHhcCcccceeeEEEEecCCee
Confidence 45778899999999999999994 89999999999999999765211 1 11123345667777664 5789
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++++.|.+|+.|++.++. ..+++.+|.+.|..+..+.||.++|+|+
T Consensus 209 lS~srD~tik~We~~tg~----------------------------------cv~t~~~h~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 209 LSCSRDNTIKAWECDTGY----------------------------------CVKTFPGHSEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred eecccccceeEEecccce----------------------------------eEEeccCchHhEEEEEecCCeeEEEecC
Confidence 999999999999987653 2344567888999999999999999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC----------C-----c-EEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD----------G-----D-VYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~----------~-----~-~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
.|.+|++|-+.+.+|...+. .|+.+|.+++|.|. + . +.+++.|++||+||+.++. ++-+
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~----cL~t 329 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM----CLFT 329 (406)
T ss_pred CCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe----EEEE
Confidence 99999999999988776664 79999999999652 1 3 6789999999999999885 4456
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
+.+|.+.|..++|+|.|+||+++..|+++++||+...+ .+.++..|...+.+++|..+ +++|||.|.++|+|.
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~----cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ----CMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce----eeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 67899999999999999999999999999999998654 34567789999999999754 899999999999995
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.2e-32 Score=214.22 Aligned_cols=271 Identities=21% Similarity=0.339 Sum_probs=215.3
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s 83 (362)
..+|.+|++--.+.|..|.+. ++.||+++. ..||+||+++........+. .+...|.++.|-. .-+++
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e-------~h~kNVtaVgF~~dgrWMyT 100 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFE-------GHTKNVTAVGFQCDGRWMYT 100 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEe-------ccCCceEEEEEeecCeEEEe
Confidence 567999999888999999984 567777755 88999999876543322332 2456677776654 34999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.||++++||++.... + ....|..+|+++..+|+...|++|..+
T Consensus 101 gseDgt~kIWdlR~~~~--q---------------------------------R~~~~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 101 GSEDGTVKIWDLRSLSC--Q---------------------------------RNYQHNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred cCCCceEEEEeccCccc--c---------------------------------hhccCCCCcceEEecCCcceEEeecCC
Confidence 99999999999975221 0 012466889999999999999999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc--eeehhhhccccceeEEEEec
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH--SLVDVLERHNSGINALALSC 240 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~h~~~v~~i~~s~ 240 (362)
|.|++||+....+.+.+......+|.++.+.|+|. ++++..-|...+|++....... ..+..++.|..-+..+.+||
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 99999999988777776655667899999999998 5667778999999987643222 23455778999999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
|+++|+++|.|.++++|+.+.. +.....+++|...+...+|+.+ +|+|||.|+.+|+|+... .+.+....||.
T Consensus 226 d~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~--~k~v~qy~gh~ 300 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA--GKEVRQYQGHH 300 (311)
T ss_pred CCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc--CceeeecCCcc
Confidence 9999999999999999998753 4455678899999999999854 999999999999999644 45578889998
Q ss_pred CcEEEEEe
Q 044557 319 GPVKCLAA 326 (362)
Q Consensus 319 ~~v~~~~~ 326 (362)
.+..|++.
T Consensus 301 K~~vc~~l 308 (311)
T KOG0315|consen 301 KAAVCVAL 308 (311)
T ss_pred cccEEEEe
Confidence 88877765
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-32 Score=243.57 Aligned_cols=278 Identities=24% Similarity=0.408 Sum_probs=224.3
Q ss_pred eeecccCccceeeeEecC--cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC
Q 044557 12 LTTLKGHNSYVSSLALAG--KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD 87 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~~--~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d 87 (362)
-++|..|+..|.+|.+.+ .+++++-..|.|.|||.++... ... +.+...+|++..+.++ -+++|+.|
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm--Vks-------feV~~~PvRa~kfiaRknWiv~GsDD 76 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM--VKS-------FEVSEVPVRAAKFIARKNWIVTGSDD 76 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee--eee-------eeecccchhhheeeeccceEEEecCC
Confidence 456777999999999964 5888899999999999876542 111 1223456666666654 49999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
..|++|+.++.+ +..++..|.+-|+|++.+|...+++|+|.|-+|+
T Consensus 77 ~~IrVfnynt~e----------------------------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 77 MQIRVFNYNTGE----------------------------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIK 122 (794)
T ss_pred ceEEEEecccce----------------------------------eeEEeeccccceeeeeecCCCCeEEecCCccEEE
Confidence 999999987654 2234557999999999999999999999999999
Q ss_pred EEECCCc-eEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec--CC
Q 044557 168 IWRTSDF-KCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC--DG 242 (362)
Q Consensus 168 iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~ 242 (362)
+||.+.. .|.+++. +|+..|.+++|+|.. .+++++-|++||+|.+.+..+.. ++++|..+|+++.+-+ |.
T Consensus 123 lW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf----Tl~gHekGVN~Vdyy~~gdk 197 (794)
T KOG0276|consen 123 LWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF----TLEGHEKGVNCVDYYTGGDK 197 (794)
T ss_pred EeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce----eeeccccCcceEEeccCCCc
Confidence 9998764 5666664 899999999999865 49999999999999997665443 4578999999999977 44
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
.+|++|+.|.+|++||.++..+ +.++.||+..|.++.|.++ .++|||+||++|||. ..+++..++|.---++
T Consensus 198 pylIsgaDD~tiKvWDyQtk~C----V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh--s~Ty~lE~tLn~gleR 271 (794)
T KOG0276|consen 198 PYLISGADDLTIKVWDYQTKSC----VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN--SKTYKLEKTLNYGLER 271 (794)
T ss_pred ceEEecCCCceEEEeecchHHH----HHHhhcccccceEEEecCCCcEEEEecCCccEEEec--CcceehhhhhhcCCce
Confidence 6999999999999999986443 4578999999999999887 799999999999998 4567777788877889
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
||+++-.+.. ..++.|.+.|.|.
T Consensus 272 vW~I~~~k~~---------~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 272 VWCIAAHKGD---------GKIAVGFDEGSVT 294 (794)
T ss_pred EEEEeecCCC---------CeEEEeccCCcEE
Confidence 9999865432 2477787777653
No 32
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-32 Score=219.48 Aligned_cols=244 Identities=25% Similarity=0.423 Sum_probs=193.1
Q ss_pred EeecceeEEEEEc---CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 65 AVGKGAVKSLVVL---ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 65 ~~~~~~v~~i~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
..|.+.|..+.+. ++.+++++.|.++.+|++...+.... . ....+.+|
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------------------~-----~~r~~~GH 62 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------------------V-----PVRRLTGH 62 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------------------c-----eeeeeecc
Confidence 3456677777653 45699999999999999875431100 0 01123468
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
...|..+..++|+++++++|+|+++|+||+.+++..+.+. +|...|.+++|+++.+ +++|+.|++|++|+.-.. ...
T Consensus 63 sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~ 140 (315)
T KOG0279|consen 63 SHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKY 140 (315)
T ss_pred ceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEE
Confidence 8899999999999999999999999999999998877775 8999999999999886 999999999999998643 222
Q ss_pred eeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCC
Q 044557 221 SLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADK 296 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~ 296 (362)
++.. ..+...|+++.|+|+ ..+|+++|.|++|++||+++.+ +...+.||++.+..++++++ +.++|+.||
T Consensus 141 t~~~--~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~----l~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 141 TIHE--DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ----LRTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred EEec--CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc----hhhccccccccEEEEEECCCCCEEecCCCCc
Confidence 2211 223788999999997 7899999999999999998633 44567899999999999876 899999999
Q ss_pred cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 297 TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+.+||+.+ .+++..+ +|...|.+++|+|+. +.|+.+ .+..|+|||+..
T Consensus 215 ~~~LwdL~~--~k~lysl-~a~~~v~sl~fspnr---------ywL~~a-t~~sIkIwdl~~ 263 (315)
T KOG0279|consen 215 EAMLWDLNE--GKNLYSL-EAFDIVNSLCFSPNR---------YWLCAA-TATSIKIWDLES 263 (315)
T ss_pred eEEEEEccC--CceeEec-cCCCeEeeEEecCCc---------eeEeec-cCCceEEEeccc
Confidence 999999754 3446666 588999999998764 455544 556799999863
No 33
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4e-32 Score=220.63 Aligned_cols=240 Identities=27% Similarity=0.472 Sum_probs=198.5
Q ss_pred ccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCcEEEEec
Q 044557 19 NSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHKIRVWKI 95 (362)
Q Consensus 19 ~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~i~~w~~ 95 (362)
...|-..++ +|+++|.|+-|...-||++.+...+-. ....+.+..|.+.+++..+..| .|++++.|.+.-+||+
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~---~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN---VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDI 173 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc---ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEc
Confidence 456666666 588999999999999999875421111 1123345567888888877765 4999999999999999
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCc
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDF 174 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~ 174 (362)
+.+. +...+.+|.+.|.+++++| +++.+++|+.|+.-++||++.+
T Consensus 174 e~g~----------------------------------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 174 ETGQ----------------------------------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred ccce----------------------------------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 7653 1234568999999999999 9999999999999999999999
Q ss_pred eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc
Q 044557 175 KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 175 ~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~ 253 (362)
.+.+.+. +|+..|++|+|.|+|. +++|+.|++.|+||+.......... ...-..+|++++||..|++|++|..|.+
T Consensus 220 ~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys--~~~~~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 220 QCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS--HDSIICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred ceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec--cCcccCCceeEEEcccccEEEeeecCCc
Confidence 9999986 8999999999999997 9999999999999998765433221 2234568999999999999999999999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
+.+||.-..+ .++.+.||.++|.|+..+++ .++|||.|.++|||.
T Consensus 297 c~vWDtlk~e----~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 297 CNVWDTLKGE----RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEeeccccc----eEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999987644 46778899999999999877 799999999999993
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-32 Score=213.19 Aligned_cols=267 Identities=19% Similarity=0.334 Sum_probs=204.7
Q ss_pred ccceeeecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s 83 (362)
+.+.+++|.+|+++|.++.+ +|+|.+||+.|.+||+|+.... .+..++.+ |-..|...+.. ..++++
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsg-------hG~EVlD~~~s~Dnskf~s 76 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSG-------HGHEVLDAALSSDNSKFAS 76 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecC-------CCceeeecccccccccccc
Confidence 34567889999999999999 5999999999999999986432 23334432 22234444333 346999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|..+.+||+++++.. -.+.+|.+.|+.+.|+.+...+++||.|
T Consensus 77 ~GgDk~v~vwDV~TGkv~----------------------------------Rr~rgH~aqVNtV~fNeesSVv~SgsfD 122 (307)
T KOG0316|consen 77 CGGDKAVQVWDVNTGKVD----------------------------------RRFRGHLAQVNTVRFNEESSVVASGSFD 122 (307)
T ss_pred CCCCceEEEEEcccCeee----------------------------------eecccccceeeEEEecCcceEEEecccc
Confidence 999999999999876421 1234799999999999999999999999
Q ss_pred CcEEEEECCCc--eEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 164 RTIKIWRTSDF--KCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 164 ~~i~iwd~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
.++++||.++. ++++.+. ...+.|.++.++. ..+++|+.||++|.||+..+... .. ....||++++|++|
T Consensus 123 ~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~~-heIvaGS~DGtvRtydiR~G~l~----sD--y~g~pit~vs~s~d 194 (307)
T KOG0316|consen 123 SSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVAE-HEIVAGSVDGTVRTYDIRKGTLS----SD--YFGHPITSVSFSKD 194 (307)
T ss_pred ceeEEEEcccCCCCccchhh-hhcCceeEEEecc-cEEEeeccCCcEEEEEeecceee----hh--hcCCcceeEEecCC
Confidence 99999998764 5666654 4567788888773 45999999999999999877532 21 23568999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeE--EEEE--eCCeEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSIL--CMAV--VSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~--~~~~--~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
++.++.++.|+++|+-|..+++ ++...+||...=. ..++ +...+++||+||.|.+||+.+. ..+..+..|
T Consensus 195 ~nc~La~~l~stlrLlDk~tGk----lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~--~~~sk~~~~ 268 (307)
T KOG0316|consen 195 GNCSLASSLDSTLRLLDKETGK----LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE--TQISKLSVV 268 (307)
T ss_pred CCEEEEeeccceeeecccchhH----HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc--eeeeeeccC
Confidence 9999999999999999987654 4566788876432 2233 3448999999999999997653 446667777
Q ss_pred CCc-EEEEEeeecCC
Q 044557 318 RGP-VKCLAAAIDND 331 (362)
Q Consensus 318 ~~~-v~~~~~~~~~~ 331 (362)
+.. |.+++++|...
T Consensus 269 ~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 269 STVIVTDLSCHPTMD 283 (307)
T ss_pred CceeEEeeecccCcc
Confidence 776 88999887654
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-30 Score=235.97 Aligned_cols=326 Identities=23% Similarity=0.397 Sum_probs=229.6
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccc------------------ee-----ee--ccceeE
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELD------------------QE-----FL--SNNNIV 64 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~------------------~~-----~~--~~~~~~ 64 (362)
...|.||.++|.+..|. ...++|.+.||.+.+|.......... .+ +. .....+
T Consensus 182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 45688999999998884 55799999999999998762100000 00 00 000000
Q ss_pred EeecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccce---eeeecc--CCCchhhhhcccc-ccceeeeeeee
Q 044557 65 AVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYT---RLATLP--TLGDRAIKLLMPK-NHVQIRRHKTC 136 (362)
Q Consensus 65 ~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~ 136 (362)
......+.+..+.. +.|+++-..|...+|.+......++... ++.+.. ..++ -+.+..+. ++..++.....
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeecc
Confidence 00112344444433 3478888889999998866543322110 111110 0011 01111111 12234443333
Q ss_pred E----EeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEE
Q 044557 137 T----WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVW 211 (362)
Q Consensus 137 ~----~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw 211 (362)
. -++|...+.+++++|||+++|+|++||.|+|||..++-|+.++. .|+..|+.+.|+..|+ +++.+-||+|+.|
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 3 25789999999999999999999999999999999999999997 7999999999999887 8899999999999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC-cEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--Ce
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR-SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DL 288 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 288 (362)
|+....+-.++.. ..+....+++..|.|..+.+|+.|. .|.+|++++++ ++..+.||.++|.+++|++ +.
T Consensus 420 DlkRYrNfRTft~---P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq----llDiLsGHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 420 DLKRYRNFRTFTS---PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ----LLDILSGHEGPVSGLSFSPDGSL 492 (893)
T ss_pred eecccceeeeecC---CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe----eeehhcCCCCcceeeEEccccCe
Confidence 9987654333321 1233457888889999999999988 59999998754 5677899999999888764 59
Q ss_pred EEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 289 VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|+|+|.|++||+|++..+.. .+.++. +...|.+++|.|++++ ||++..||.|-+||..
T Consensus 493 LaS~SWDkTVRiW~if~s~~-~vEtl~-i~sdvl~vsfrPdG~e---------laVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 493 LASGSWDKTVRIWDIFSSSG-TVETLE-IRSDVLAVSFRPDGKE---------LAVATLDGQITFFDIK 550 (893)
T ss_pred EEeccccceEEEEEeeccCc-eeeeEe-eccceeEEEEcCCCCe---------EEEEEecceEEEEEhh
Confidence 99999999999999866433 244554 6778999999988754 8999999999999984
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-32 Score=246.97 Aligned_cols=287 Identities=26% Similarity=0.416 Sum_probs=235.0
Q ss_pred eecccCccceeeeEecC--cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCC
Q 044557 13 TTLKGHNSYVSSLALAG--KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDH 88 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~~--~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg 88 (362)
..++.-+..|..|+|.+ .+++|+-..|.|++||..-. .+...|. .|.++|+.+.+-+. .+++|+.|-
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~rFd-------eHdGpVRgv~FH~~qplFVSGGDDy 73 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDRFD-------EHDGPVRGVDFHPTQPLFVSGGDDY 73 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhh--hHHhhhh-------ccCCccceeeecCCCCeEEecCCcc
Confidence 34667788999999964 48999999999999995422 1222332 26789999998765 488899999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
.|++|+..... ..+++.+|.+-|+.+.|++.-.+++++|.|++|||
T Consensus 74 kIkVWnYk~rr----------------------------------clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 74 KIKVWNYKTRR----------------------------------CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRI 119 (1202)
T ss_pred EEEEEecccce----------------------------------ehhhhccccceeEEeeccCCCceEEEccCCCeEEE
Confidence 99999986533 12344689999999999999999999999999999
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc-------------------------ee
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH-------------------------SL 222 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~-------------------------~~ 222 (362)
|+..+.+|+..+. +|...|.|..|+|... +++++-|.+||+||+..-.+.. -.
T Consensus 120 WNwqsr~~iavlt-GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 120 WNWQSRKCIAVLT-GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred EeccCCceEEEEe-cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 9999999998876 8999999999999665 8899999999999975321100 01
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRI 300 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~ 300 (362)
...+.+|..+|+-++|+|.-..++||+.|+.|++|.+.. .+.+.+.+..||.+.|.|+-|.+ ++++|.|+|++||+
T Consensus 199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne--tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE--TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV 276 (1202)
T ss_pred eeeecccccccceEEecCCcceEEecCCcceeeEEEecc--ccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence 245688999999999999999999999999999998864 34456678899999999999987 69999999999999
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
||+..+ +.++++..-.+.-|.++.+|..+ |..+++|+-+.++.++
T Consensus 277 wDm~kR--t~v~tfrrendRFW~laahP~lN----------LfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 277 WDMTKR--TSVQTFRRENDRFWILAAHPELN----------LFAAGHDSGMIVFKLE 321 (1202)
T ss_pred Eecccc--cceeeeeccCCeEEEEEecCCcc----------eeeeecCCceEEEEEc
Confidence 997654 45888887888999999987653 5567789998898885
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-31 Score=238.34 Aligned_cols=324 Identities=26% Similarity=0.399 Sum_probs=231.3
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
...-+..|+||++.|+...|. .+++++.|.|+.||+||+++..+. .....|++.+..+++.++.+++++
T Consensus 138 ~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf---------~Thvd~r~Eiw~l~~~~~~lvt~~ 208 (888)
T KOG0306|consen 138 GEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCF---------ETHVDHRGEIWALVLDEKLLVTAG 208 (888)
T ss_pred cceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceee---------eEEecccceEEEEEEecceEEEEe
Confidence 344556799999999999884 579999999999999999875431 122345678888888888899999
Q ss_pred cCCcEEEEecCCCCCC-------------------cccceeeeeccC-------CCchhh--------------------
Q 044557 86 QDHKIRVWKINNQEPD-------------------HQKYTRLATLPT-------LGDRAI-------------------- 119 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~-------------------~~~~~~~~~~~~-------~~~~~~-------------------- 119 (362)
.|+.+++|++...... ..+...+...+. ..++.+
T Consensus 209 ~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k 288 (888)
T KOG0306|consen 209 TDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLK 288 (888)
T ss_pred cCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHH
Confidence 9999999998211000 000000000000 000000
Q ss_pred ------------------------hh-------------ccccccce------------e-------------eeeeeeE
Q 044557 120 ------------------------KL-------------LMPKNHVQ------------I-------------RRHKTCT 137 (362)
Q Consensus 120 ------------------------~~-------------~~~~~~~~------------~-------------~~~~~~~ 137 (362)
.+ +.+.+... . ......+
T Consensus 289 ~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~ 368 (888)
T KOG0306|consen 289 RAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE 368 (888)
T ss_pred HhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence 00 00000000 0 0011234
Q ss_pred EeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEee-------------------------------------
Q 044557 138 WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI------------------------------------- 180 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------------------------------------- 180 (362)
+.+|...|++++++.+...+++|+ .+.|+||+..+.+|++++
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~ 447 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV 447 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence 567999999999999888787765 589999999888777653
Q ss_pred --eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC----cceeehhh----hccccceeEEEEecCCCEEEEEc
Q 044557 181 --TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK----KHSLVDVL----ERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 181 --~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~----~~~~~~~~----~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
..+|++++++++.+|+++ +++|+.|++|++||..-... ..+.+... -.-...|.|+++||||++|+.+-
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 126999999999999997 99999999999998642110 00111100 01246789999999999999999
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.|++|++|-+.+- ...-.+.||.-+|.||..+++ +++|||.|++||+|-. .-+.|-+.+-+|.+.|+++.|.
T Consensus 528 LdnTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL--dFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 528 LDNTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL--DFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred ccCeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEeccCCCceEEecc--ccchhhhhhhcccCceeEEEEc
Confidence 9999999998753 234468899999999988765 8999999999999964 3467888999999999999998
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|.. +++.|+|.|+.|+-||-
T Consensus 602 P~~---------~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 602 PKT---------HLFFTCGKDGKVKQWDG 621 (888)
T ss_pred ccc---------eeEEEecCcceEEeech
Confidence 742 56889999999999975
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=240.99 Aligned_cols=280 Identities=21% Similarity=0.379 Sum_probs=217.4
Q ss_pred ecccCccceeeeEecCcEEEE-ecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEecCCcE
Q 044557 14 TLKGHNSYVSSLALAGKFLYT-GSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDHKI 90 (362)
Q Consensus 14 tl~gH~~~V~~l~~~~~~l~t-~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg~i 90 (362)
++.||...|++++++.+.++. .+..+.|++|+..+..+... ...+.+.+..+. ...+++|...|.+
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRT-----------i~~~y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRT-----------ITCGYILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEE-----------eccccEEEEEecCCCceEEEeccCCce
Confidence 567999999999997543322 33568899999876543221 122233333333 3458899999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
.+||+..... ..+...|.+.+.+++.+||++.+++||.|.+|++||
T Consensus 437 ~vfdlaS~~l----------------------------------~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWd 482 (888)
T KOG0306|consen 437 QVFDLASASL----------------------------------VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWD 482 (888)
T ss_pred EEEEeehhhh----------------------------------hhhhhccccceeeeeecCCCCceEEecCCcEEEEEe
Confidence 9999864321 012235889999999999999999999999999998
Q ss_pred CCCc--------eEE---EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 171 TSDF--------KCL---ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 171 ~~~~--------~~~---~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
..-- +.+ ++-...-++.|.|+++||||+ ++.+--|.+|+||-+++-+ +.-.+.+|..||.++.+
T Consensus 483 f~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK----FflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 483 FKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK----FFLSLYGHKLPVLSMDI 558 (888)
T ss_pred EEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee----eeeeecccccceeEEec
Confidence 6321 111 000112356799999999998 5566789999999887753 44466899999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
|||++.++|||.|.+|++|-+.-+++. ..+-+|.+.|.++.|.|+ ++.|+|.|+.||-||. .++.+++.|.|
T Consensus 559 S~DSklivTgSADKnVKiWGLdFGDCH----KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg--~kFe~iq~L~~ 632 (888)
T KOG0306|consen 559 SPDSKLIVTGSADKNVKIWGLDFGDCH----KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG--EKFEEIQKLDG 632 (888)
T ss_pred cCCcCeEEeccCCCceEEeccccchhh----hhhhcccCceeEEEEcccceeEEEecCcceEEeech--hhhhhheeecc
Confidence 999999999999999999998876643 345679999999999876 7899999999999994 46888999999
Q ss_pred CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 317 HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 317 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|...|++++.+|++ .+++|+|+|.+||+|...
T Consensus 633 H~~ev~cLav~~~G---------~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 633 HHSEVWCLAVSPNG---------SFVVSSSHDKSIRLWERT 664 (888)
T ss_pred chheeeeeEEcCCC---------CeEEeccCCceeEeeecc
Confidence 99999999998765 479999999999999863
No 39
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=3.6e-31 Score=237.32 Aligned_cols=281 Identities=28% Similarity=0.478 Sum_probs=217.2
Q ss_pred eeccceeeecccCccceeeeEe-cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEE-EEEc---Cce
Q 044557 6 VVDHHCLTTLKGHNSYVSSLAL-AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKS-LVVL---ADK 80 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~~V~~l~~-~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-i~~~---~~~ 80 (362)
++..++.++|.||...|..+.+ ++..++++|.||++|+|+-..... ..... ...+.+-+.. +... ..+
T Consensus 1 ~~~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~-l~~~~------~~~~~g~i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 1 MPQYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQY-LETHA------FEGPKGFIANSICYAESDKGR 73 (745)
T ss_pred CCcceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCccc-cccee------cccCcceeeccceeccccCcc
Confidence 3677899999999999999998 466799999999999998532111 11000 0112222222 2222 234
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+++++.|.+|.+|.....++. +++.+|+..|.|++...++. +++|
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~----------------------------------~~LkgH~snVC~ls~~~~~~-~iSg 118 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPL----------------------------------YTLKGHKSNVCSLSIGEDGT-LISG 118 (745)
T ss_pred eEeecccceEEEEecCCCCch----------------------------------hhhhccccceeeeecCCcCc-eEec
Confidence 999999999999987654431 23357999999999888877 8999
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
|+|.++++|... ++...+ .+|+.+|++++..|++.++||+.|++||+|.-. +...++.+|..-|..+++-+
T Consensus 119 SWD~TakvW~~~--~l~~~l-~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~ 189 (745)
T KOG0301|consen 119 SWDSTAKVWRIG--ELVYSL-QGHTASVWAVASLPENTYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLD 189 (745)
T ss_pred ccccceEEecch--hhhccc-CCcchheeeeeecCCCcEEeccCcceeeeccCC------chhhhhccchhheeeeEEec
Confidence 999999999765 334444 589999999999999999999999999999642 35667889999999999986
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
+ ..+++++.||.|++|++.. + .+..+.||+..|.+++.. ...++|+++|+++|+|+.. .|.+.+.-=.
T Consensus 190 ~-~~flScsNDg~Ir~w~~~g-e----~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~----e~~q~I~lPt 259 (745)
T KOG0301|consen 190 D-SHFLSCSNDGSIRLWDLDG-E----VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD----ECVQVITLPT 259 (745)
T ss_pred C-CCeEeecCCceEEEEeccC-c----eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC----ceEEEEecCc
Confidence 5 5678999999999999843 2 345678999999999853 4589999999999999842 6777776334
Q ss_pred CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 319 GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..||++.+-++++ |++|+.||.||||-..
T Consensus 260 tsiWsa~~L~NgD----------Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 260 TSIWSAKVLLNGD----------IVVGGSDGRVRVFTVD 288 (745)
T ss_pred cceEEEEEeeCCC----------EEEeccCceEEEEEec
Confidence 4899998887765 8899999999999775
No 40
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=246.36 Aligned_cols=280 Identities=30% Similarity=0.483 Sum_probs=230.0
Q ss_pred eeeccc-CccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEecCC
Q 044557 12 LTTLKG-HNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDH 88 (362)
Q Consensus 12 ~~tl~g-H~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg 88 (362)
...+.+ |...+.+..+...++++++.|++|++||....... ... +..|.+.+.++.+. ++.|++|+.|.
T Consensus 200 ~~~~~~~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i-~~~-------l~GH~g~V~~l~~~~~~~~lvsgS~D~ 271 (537)
T KOG0274|consen 200 YKVLLGTDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLI-LTR-------LVGHFGGVWGLAFPSGGDKLVSGSTDK 271 (537)
T ss_pred ceeecccCcchhhhheeecCeEEecCCCceeEEeecccceEE-Eee-------ccCCCCCceeEEEecCCCEEEEEecCC
Confidence 344555 56778888888999999999999999997653211 111 23467889999887 78899999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
++++||...+.. ...+.+|.+.+.++... ..++++||.|.+|++
T Consensus 272 t~rvWd~~sg~C----------------------------------~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 272 TERVWDCSTGEC----------------------------------THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV 315 (537)
T ss_pred cEEeEecCCCcE----------------------------------EEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence 999999876542 23445788899998764 457888999999999
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
|+++++.++..+. +|..+|.++... ++.+++|+.|++|++||..++ ++...+.+|...|.++.+.+. ..+++|
T Consensus 316 W~v~n~~~l~l~~-~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~----~cl~sl~gH~~~V~sl~~~~~-~~~~Sg 388 (537)
T KOG0274|consen 316 WDVTNGACLNLLR-GHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTG----KCLKSLSGHTGRVYSLIVDSE-NRLLSG 388 (537)
T ss_pred EeccCcceEEEec-cccccEEEEEec-CCEEEEEecCceEEEEEhhhc----eeeeeecCCcceEEEEEecCc-ceEEee
Confidence 9999999998775 599999999998 667999999999999999865 456677889999999987654 899999
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecC-CCCcEEEEEee
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEG-HRGPVKCLAAA 327 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~-h~~~v~~~~~~ 327 (362)
+.|++|++||++... ..+.++.+|...+.++.+...++++++.|++|++||.. .+.++.++.+ |...|..+++.
T Consensus 389 s~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~--~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAE--EGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred eeccceEeecCCchh---hhhhhhcCCcccccccccccceeEeccccccEEEeecc--cCceeeeeccCCcccEEEeecC
Confidence 999999999998752 23557889999998898888999999999999999964 4678899998 78999988774
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...+++++.||++++||+..
T Consensus 464 -----------~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 464 -----------KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred -----------cceEEEEecCCeeEEEeccc
Confidence 13478889999999999953
No 41
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.5e-32 Score=244.94 Aligned_cols=204 Identities=28% Similarity=0.470 Sum_probs=174.1
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~ 86 (362)
..++|-||.++|...+|+ .++|++||.|+++|+|.+.+... ....+.|..+|..+.+.+. +++|++.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~---------~V~y~GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC---------LVIYKGHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeeccccee---------EEEecCCCcceeeEEecCCceEEEecCC
Confidence 455699999999999995 67999999999999999876431 1122346678888888876 4889999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
|++.++|..+...+. -.+.+|...|.|+.|+|+..|+++||.|++|
T Consensus 514 D~tArLWs~d~~~Pl----------------------------------RifaghlsDV~cv~FHPNs~Y~aTGSsD~tV 559 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPL----------------------------------RIFAGHLSDVDCVSFHPNSNYVATGSSDRTV 559 (707)
T ss_pred CceeeeeecccCCch----------------------------------hhhcccccccceEEECCcccccccCCCCceE
Confidence 999999987643221 0124789999999999999999999999999
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
|+||+.++..++.+. +|.++|.+++|+|.|+ |++|+.||.|++||+.++. +...+.+|.+.|.++.|+.||..|
T Consensus 560 RlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~----~v~~l~~Ht~ti~SlsFS~dg~vL 634 (707)
T KOG0263|consen 560 RLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS----LVKQLKGHTGTIYSLSFSRDGNVL 634 (707)
T ss_pred EEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc----chhhhhcccCceeEEEEecCCCEE
Confidence 999999999999885 8999999999999998 8899999999999998874 455677899999999999999999
Q ss_pred EEEcCCCcEEEEeccCC
Q 044557 246 YSGACDRSIIVWEKEED 262 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~ 262 (362)
++||.|++|++||+...
T Consensus 635 asgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 635 ASGGADNSVRLWDLTKV 651 (707)
T ss_pred EecCCCCeEEEEEchhh
Confidence 99999999999998653
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-31 Score=245.84 Aligned_cols=243 Identities=21% Similarity=0.365 Sum_probs=202.4
Q ss_pred eeEEEEEcCce--eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeE
Q 044557 70 AVKSLVVLADK--LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSA 147 (362)
Q Consensus 70 ~v~~i~~~~~~--l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 147 (362)
.+..+.+-+.+ ++++-..|.|++||.+.+... ..+..|.++|+.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli----------------------------------~rFdeHdGpVRg 56 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI----------------------------------DRFDEHDGPVRG 56 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHH----------------------------------hhhhccCCccce
Confidence 34455555543 778888999999998643211 112469999999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+.|+|...+|++|+.|-.|++|+..+.+|+.++. +|.+.|+.+.|++.-. +++++.|.+|+||+..+.+ ++..+
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~----~iavl 131 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK----CIAVL 131 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCCc----eEEEE
Confidence 9999999999999999999999999999999886 8999999999998876 8999999999999998764 55677
Q ss_pred hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCC-------------------------CCcEEEEEeecCccceeEE
Q 044557 227 ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEED-------------------------DGNILVVGALRGHTKSILC 281 (362)
Q Consensus 227 ~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~-------------------------~~~~~~~~~~~~h~~~v~~ 281 (362)
.+|+..|.|..|+|....++|+|.|.+||+||+..- .....+-..+.||...|..
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence 899999999999999999999999999999996320 0112234457899999999
Q ss_pred EEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 282 MAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 282 ~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.+|.+ .+++||+.|+.||+|+....+.=.+.+..||.+.|.++.|+|.. .+|.|.|.|++|||||+...
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q---------~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ---------DLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc---------ceeEecCCCccEEEEecccc
Confidence 99998 58999999999999997665544567889999999999998753 46899999999999999765
Q ss_pred c
Q 044557 360 L 360 (362)
Q Consensus 360 ~ 360 (362)
+
T Consensus 283 t 283 (1202)
T KOG0292|consen 283 T 283 (1202)
T ss_pred c
Confidence 4
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-31 Score=234.87 Aligned_cols=237 Identities=23% Similarity=0.381 Sum_probs=197.2
Q ss_pred cceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
...|.++.+-+. -++++-.+|.|.+|+.+++.... ++.-..-+|
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk----------------------------------sfeV~~~Pv 58 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK----------------------------------SFEVSEVPV 58 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeee----------------------------------eeeecccch
Confidence 445666666543 37777789999999987654211 111123467
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
++..|-+--+++++|+.|..||||+.++++.+..+. +|.+.|++++.+|.-. ++|++.|-+||+||.+.. -.+..
T Consensus 59 Ra~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~---wa~~q 134 (794)
T KOG0276|consen 59 RAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---WACEQ 134 (794)
T ss_pred hhheeeeccceEEEecCCceEEEEecccceeeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCc---eeeee
Confidence 888888888999999999999999999999999886 8999999999999875 889999999999998653 35666
Q ss_pred hhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-C---CeEEEeeCCCcEE
Q 044557 225 VLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-S---DLVCSGSADKTIR 299 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~---~~~~s~s~D~~i~ 299 (362)
++.+|...|.+++|.| |.+.+++++.|++|++|.+.++.++. +++||...|.|+.+- + .+++||+.|.+||
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf----Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiK 210 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF----TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIK 210 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce----eeeccccCcceEEeccCCCcceEEecCCCceEE
Confidence 7889999999999999 77899999999999999998766543 467999999999984 2 2999999999999
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+||. ++-.|+++|+||...|..+.|+|+- .+|+|||.||++|||+-.
T Consensus 211 vWDy--Qtk~CV~TLeGHt~Nvs~v~fhp~l---------piiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 211 VWDY--QTKSCVQTLEGHTNNVSFVFFHPEL---------PIIISGSEDGTVRIWNSK 257 (794)
T ss_pred Eeec--chHHHHHHhhcccccceEEEecCCC---------cEEEEecCCccEEEecCc
Confidence 9995 3457899999999999999998764 479999999999999863
No 44
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.3e-30 Score=220.00 Aligned_cols=273 Identities=21% Similarity=0.323 Sum_probs=216.0
Q ss_pred ccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEe
Q 044557 19 NSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWK 94 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~ 94 (362)
+..|++|+|+ |..||||+.||.+|+|+..... ...+..|+++|.++.+.. ++|++++.|+++-+||
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWD 304 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh----------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEe
Confidence 4689999995 8999999999999999965421 122345789999999875 4599999999999999
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCc
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 174 (362)
...+... ..+..|..+-..+.|-.+ .-|++++.|+.|+|+.+...
T Consensus 305 ~~~g~~~----------------------------------q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 305 AHTGTVK----------------------------------QQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred ccCceEE----------------------------------EeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCC
Confidence 8654311 111234444345555433 46889999999999999998
Q ss_pred eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC---------CE
Q 044557 175 KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG---------SV 244 (362)
Q Consensus 175 ~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---------~~ 244 (362)
.+..++. +|..+|.++.|+|.|. |++++.|++++||...... ....+..|...|..+.|+|+| ..
T Consensus 350 ~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~----~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~ 424 (524)
T KOG0273|consen 350 RPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN----SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLM 424 (524)
T ss_pred Ccceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCCc----chhhhhhhccceeeEeecCCCCccCCCcCCce
Confidence 8888887 5999999999999998 7899999999999876543 355678899999999999964 58
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEE
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVK 322 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~ 322 (362)
|++++.|++|++||+..+. .+..+..|+.+|.+++|+++ ++++|+.||.|.+|+. +.++.++.+.+ .+.|.
T Consensus 425 l~sas~dstV~lwdv~~gv----~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~--~~~~l~~s~~~-~~~If 497 (524)
T KOG0273|consen 425 LASASFDSTVKLWDVESGV----PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST--KTGKLVKSYQG-TGGIF 497 (524)
T ss_pred EEEeecCCeEEEEEccCCc----eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc--cchheeEeecC-CCeEE
Confidence 9999999999999998754 45668889999999999854 9999999999999985 45666777765 44588
Q ss_pred EEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+.|+.++ .+|..+-.|+.+.+-|+.
T Consensus 498 el~Wn~~G---------~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 498 ELCWNAAG---------DKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEcCCC---------CEEEEEecCCCceEEEec
Confidence 88886543 345556678999998874
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=7.7e-30 Score=213.14 Aligned_cols=289 Identities=19% Similarity=0.277 Sum_probs=222.6
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
.--+.+|..|+++|.+++.. .++++|||.|-...+|++.+.. ...+ +..|+..|.++.++.+ .|++|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~~~e-------ltgHKDSVt~~~FshdgtlLATG 124 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--FAGE-------LTGHKDSVTCCSFSHDGTLLATG 124 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--ceeE-------ecCCCCceEEEEEccCceEEEec
Confidence 34567899999999999996 5689999999999999987654 2222 2346778999988765 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
..+|.|++|+..++.... .+..--+.+.-+.|+|-+.+|+.|+.||
T Consensus 125 dmsG~v~v~~~stg~~~~----------------------------------~~~~e~~dieWl~WHp~a~illAG~~DG 170 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQW----------------------------------KLDQEVEDIEWLKWHPRAHILLAGSTDG 170 (399)
T ss_pred CCCccEEEEEcccCceEE----------------------------------EeecccCceEEEEecccccEEEeecCCC
Confidence 999999999986543110 0111234567889999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehh------------------
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDV------------------ 225 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~------------------ 225 (362)
.+-+|.+.+....+.+ .+|..++++=.|.|+|+ ++++..||+|++|++.++.+...+...
T Consensus 171 svWmw~ip~~~~~kv~-~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 171 SVWMWQIPSQALCKVM-SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred cEEEEECCCcceeeEe-cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 9999999986555545 48999999999999997 889999999999999887644333100
Q ss_pred ---------------------hh--------ccccceeEEE---EecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec
Q 044557 226 ---------------------LE--------RHNSGINALA---LSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR 273 (362)
Q Consensus 226 ---------------------~~--------~h~~~v~~i~---~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 273 (362)
.. .+...+.++. ++..=.+.|+|+.||+|.+||+...... ..-
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R-----~~c 324 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR-----HIC 324 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh-----eec
Confidence 00 1111222232 3333457789999999999998764322 223
Q ss_pred CccceeEEEEEeC-CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 274 GHTKSILCMAVVS-DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 274 ~h~~~v~~~~~~~-~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
.|...|..+.|.+ .++++++.||.|+.||. +.+.+..++.||...|.+++.+|+. ++++|+|.|++.+
T Consensus 325 ~he~~V~~l~w~~t~~l~t~c~~g~v~~wDa--RtG~l~~~y~GH~~~Il~f~ls~~~---------~~vvT~s~D~~a~ 393 (399)
T KOG0296|consen 325 EHEDGVTKLKWLNTDYLLTACANGKVRQWDA--RTGQLKFTYTGHQMGILDFALSPQK---------RLVVTVSDDNTAL 393 (399)
T ss_pred cCCCceEEEEEcCcchheeeccCceEEeeec--cccceEEEEecCchheeEEEEcCCC---------cEEEEecCCCeEE
Confidence 4788899999977 69999999999999994 6688899999999999999998764 4699999999999
Q ss_pred EEecc
Q 044557 353 VWQIS 357 (362)
Q Consensus 353 ~W~~~ 357 (362)
|++++
T Consensus 394 VF~v~ 398 (399)
T KOG0296|consen 394 VFEVP 398 (399)
T ss_pred EEecC
Confidence 99875
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=9e-31 Score=218.17 Aligned_cols=241 Identities=22% Similarity=0.404 Sum_probs=203.4
Q ss_pred ceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEE
Q 044557 61 NNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTW 138 (362)
Q Consensus 61 ~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
..++..|.+.|.++++.+ ..+++++.|++|++||+.++.. ..++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L----------------------------------kltl 189 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL----------------------------------KLTL 189 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE----------------------------------EEee
Confidence 456677889999998865 3599999999999999986541 1123
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
-+|...|+.+++++--.||+++++|+.|+.||++..+.++.+ .+|-..|.+++..|.-. +++|+.|.++|+||+.+..
T Consensus 190 tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~ 268 (460)
T KOG0285|consen 190 TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA 268 (460)
T ss_pred cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccc
Confidence 468889999999999999999999999999999999988876 48999999999999876 8999999999999998754
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCC
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSAD 295 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D 295 (362)
.+.++.+|..+|..+.+.|.+..+++||.|++|++||+..++. ..++..|...|.+++..|. .++|+|.|
T Consensus 269 ----~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt----~~tlt~hkksvral~lhP~e~~fASas~d 340 (460)
T KOG0285|consen 269 ----SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT----MITLTHHKKSVRALCLHPKENLFASASPD 340 (460)
T ss_pred ----eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce----eEeeecccceeeEEecCCchhhhhccCCc
Confidence 3456789999999999999999999999999999999987543 3456779999999998875 78899988
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.|+-|++. .+..++.+.+|...|++++...++ ++++|++.|.+-+||..
T Consensus 341 -nik~w~~p--~g~f~~nlsgh~~iintl~~nsD~----------v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 341 -NIKQWKLP--EGEFLQNLSGHNAIINTLSVNSDG----------VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred -cceeccCC--ccchhhccccccceeeeeeeccCc----------eEEEcCCceEEEEEecC
Confidence 58999964 345577899999999999875432 57899999999999973
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.9e-30 Score=216.62 Aligned_cols=274 Identities=23% Similarity=0.425 Sum_probs=203.5
Q ss_pred cceeeecccCccceeeeEec-----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--cee
Q 044557 9 HHCLTTLKGHNSYVSSLALA-----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKL 81 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~-----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l 81 (362)
.++..++.||.++|.++++. ...|+++|.|.++++|..+.+....... .+-..|+..|.++...+ .++
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~-----~~~~GHk~~V~sVsv~~sgtr~ 208 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL-----KVCRGHKRSVDSVSVDSSGTRF 208 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH-----hHhcccccceeEEEecCCCCeE
Confidence 56888999999999999882 3469999999999999987643221111 11235788898988754 469
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++++.|.+|++|+........ ......-+ +..... ......+...-++.+|.+.|.++.|++ ...++++|
T Consensus 209 ~SgS~D~~lkiWs~~~~~~~~--~E~~s~~r----rk~~~~---~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S 278 (423)
T KOG0313|consen 209 CSGSWDTMLKIWSVETDEEDE--LESSSNRR----RKKQKR---EKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS 278 (423)
T ss_pred EeecccceeeecccCCCcccc--ccccchhh----hhhhhh---hhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence 999999999999943222110 00000000 000000 000112233456679999999999988 67899999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
+|.+|+.||+.++.+...+. -....+++.++|... +++|+.|..|++||..++... -....+.+|++.|.++.|+|
T Consensus 279 wDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs-~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS-VVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred ccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCceeecCCCCCCCc-eeEEeeecchhhhhheecCC
Confidence 99999999999998877664 345789999999876 788999999999999877432 23445678999999999999
Q ss_pred CC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeC
Q 044557 241 DG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRG 303 (362)
Q Consensus 241 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~ 303 (362)
.. .+|++|+.|+++++||+++.... +..+.+|.+.|+++.|... .++||+.|++|++++.
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k~p---lydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTKAP---LYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCCCc---ceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 65 56889999999999999986644 3457789999999999755 9999999999999974
No 48
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=207.44 Aligned_cols=246 Identities=22% Similarity=0.352 Sum_probs=190.4
Q ss_pred ceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCc
Q 044557 10 HCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHK 89 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~ 89 (362)
..+-.+..|.++|++|++++.|+||||.|-+|+|||+.... +
T Consensus 34 ~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~-----q--------------------------------- 75 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRK-----Q--------------------------------- 75 (362)
T ss_pred eccccccccccceeEEEecceeEeccCCCCcEEEEeccchh-----h---------------------------------
Confidence 34556778999999999999999999999999999864311 0
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC--EEEEEECCCcEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET--LLYSVSWDRTIK 167 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~ 167 (362)
...+..|.+.|+++.|.++.. .|++|+.||.|.
T Consensus 76 ---------------------------------------------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 76 ---------------------------------------------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred ---------------------------------------------hcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 001135778899999988765 899999999999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCcE-EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDV-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY 246 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 246 (362)
+|+...++++..+. +|...|+.++++|.++| ++.+.|+.+++|++-.+.....+ .+ ...-+.+.|+|.|.+++
T Consensus 111 iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~--~L---~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 111 IWRVGSWELLKSLK-AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL--NL---KNKATLVSWSPQGDHFV 184 (362)
T ss_pred EEEcCCeEEeeeec-ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee--cc---CCcceeeEEcCCCCEEE
Confidence 99999999988875 89999999999999996 48899999999999887643211 11 22234499999999988
Q ss_pred EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEE
Q 044557 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLA 325 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~ 325 (362)
.++.++ |-+|.+++..- ...+. -..++.|+.|. ++.+++|..|+.|++||... ..+...+.+|..+|.+++
T Consensus 185 v~~~~~-i~i~q~d~A~v----~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds--~~~~~~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 185 VSGRNK-IDIYQLDNASV----FREIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDS--DTPLTEFLAHENRVKDIA 256 (362)
T ss_pred EEeccE-EEEEecccHhH----hhhhh-ccccceeeeecCCceEEEecCCceEEEeccCC--CccceeeecchhheeeeE
Confidence 888764 77898765321 11111 12557788774 56999999999999999543 566788999999999998
Q ss_pred eeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 326 AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+..+ +.+.+|+|+|.||.|++||++--
T Consensus 257 ~~~~-------~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 257 SYTN-------PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEec-------CCceEEEEeccCceEEEEEcccc
Confidence 6543 44589999999999999999654
No 49
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=232.11 Aligned_cols=306 Identities=21% Similarity=0.317 Sum_probs=197.9
Q ss_pred ceeeecc-cCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEec
Q 044557 10 HCLTTLK-GHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQ 86 (362)
Q Consensus 10 ~~~~tl~-gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~ 86 (362)
...+.+. +|.+.|+++.| +|+||||||.|+.||||.+....... ...+.-.++.+ ....
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~------------~~~~~~~~~~~------~~~~ 318 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR------------VAEGDSSCMYF------EYNA 318 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc------------ccccccchhhh------hhhh
Confidence 3445566 89999999999 49999999999999999864321100 00111111100 0000
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
.+.+.--.... +................ ....+...+.+.....+.+.+|.+.|..++|+.+ ++|+++|.|++|
T Consensus 319 ~s~~~p~~s~~-~~~~~~~s~~~~~~~s~----~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTV 392 (712)
T KOG0283|consen 319 NSQIEPSTSSE-EKISSRTSSSRKGSQSP----CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTV 392 (712)
T ss_pred ccccCcccccc-ccccccccccccccCCc----cccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccE
Confidence 01000000000 00000000000000000 0111111222334455677899999999999986 578899999999
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCE
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 244 (362)
|+|++...+|+..+. |.+.|+||+|+|-. .|++|+-||+||||++...+ ....... ..-|++++|.|||++
T Consensus 393 RLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl-~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 393 RLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDL-RDLITAVCYSPDGKG 465 (712)
T ss_pred EeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeecCcCe----eEeehhh-hhhheeEEeccCCce
Confidence 999999999999885 99999999999844 59999999999999986532 2222222 367999999999999
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeecCc------cceeEEEEEe---CCeEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGH------TKSILCMAVV---SDLVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h------~~~v~~~~~~---~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
.+.|+.+|.+++|+..... +..-..+.-| ...|+.+.+. ++.++..|.|..|||+|..+ -.++..|+
T Consensus 466 avIGt~~G~C~fY~t~~lk--~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--~~lv~KfK 541 (712)
T KOG0283|consen 466 AVIGTFNGYCRFYDTEGLK--LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--KDLVHKFK 541 (712)
T ss_pred EEEEEeccEEEEEEccCCe--EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc--hhhhhhhc
Confidence 9999999999999986432 2111111111 2278888875 34688999999999999643 34566777
Q ss_pred CCCC--cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 316 GHRG--PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 316 ~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
|+.+ .-...+|+.+ |++|++||.|..|.||++..+
T Consensus 542 G~~n~~SQ~~Asfs~D---------gk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSD---------GKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccccCCcceeeeEccC---------CCEEEEeecCceEEEEeCCCC
Confidence 6654 2244566543 457999999999999998443
No 50
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.7e-29 Score=232.45 Aligned_cols=253 Identities=28% Similarity=0.474 Sum_probs=205.8
Q ss_pred ceeccceeee-cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCcee
Q 044557 5 SVVDHHCLTT-LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKL 81 (362)
Q Consensus 5 ~~~~~~~~~t-l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l 81 (362)
+..+.+.+.+ |.||.+.|+++.+. +.++++||.|.++|+||..++.+ ..++..|...+.++...+..+
T Consensus 234 ~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C---------~~~l~gh~stv~~~~~~~~~~ 304 (537)
T KOG0274|consen 234 DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC---------THSLQGHTSSVRCLTIDPFLL 304 (537)
T ss_pred ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE---------EEEecCCCceEEEEEccCceE
Confidence 3456667777 99999999999997 88999999999999999876542 223334667788888888889
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++|+.|.+|++|+++++.. ...+.+|.++|.++..+ +.++++|+
T Consensus 305 ~sgs~D~tVkVW~v~n~~~----------------------------------l~l~~~h~~~V~~v~~~--~~~lvsgs 348 (537)
T KOG0274|consen 305 VSGSRDNTVKVWDVTNGAC----------------------------------LNLLRGHTGPVNCVQLD--EPLLVSGS 348 (537)
T ss_pred eeccCCceEEEEeccCcce----------------------------------EEEeccccccEEEEEec--CCEEEEEe
Confidence 9999999999999975331 11223489999999987 78999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
.|++|++||+.+++++..+. +|+..|.++.+.+...+++|+.|++|++||+.+.. .++.++..|..-|..+.+ .
T Consensus 349 ~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~--~ 422 (537)
T KOG0274|consen 349 YDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLL--R 422 (537)
T ss_pred cCceEEEEEhhhceeeeeec-CCcceEEEEEecCcceEEeeeeccceEeecCCchh---hhhhhhcCCccccccccc--c
Confidence 99999999999999999987 79999999988876679999999999999998762 456677888888865544 6
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEe
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l 314 (362)
+++|++++.|++|++||..+++. ...+.+ |...|.++++..+.+++++.|+++++||+. .+++...+
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~----~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~--~~~~~~~l 490 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGEC----LRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLR--SGTLIRTL 490 (537)
T ss_pred cceeEeccccccEEEeecccCce----eeeeccCCcccEEEeecCcceEEEEecCCeeEEEecc--cCchhhhh
Confidence 78999999999999999987553 334555 678899998887789999999999999964 34444444
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=9.4e-29 Score=229.00 Aligned_cols=243 Identities=30% Similarity=0.487 Sum_probs=193.7
Q ss_pred cceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
...+.++.+..+ .+++++.|+.+++|+...... . ......+|...|
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------~--------------------------~~~~l~~h~~~v 206 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------N--------------------------LLRELSGHTRGV 206 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------h--------------------------hhccccccccce
Confidence 446667777654 488899999999998843220 0 000113688899
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEEC-CCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRT-SDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~-~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
.+++|+|+++++++++.|++|+|||+ ..+.+++.+. +|...|.+++|+|+++ +++|+.|++|++||+.++. +.
T Consensus 207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~----~~ 281 (456)
T KOG0266|consen 207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE----CV 281 (456)
T ss_pred eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe----EE
Confidence 99999999999999999999999999 4457888775 9999999999999996 8899999999999998854 55
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce--eEEEEEeCC--eEEEeeCCCcEE
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS--ILCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~--~~~s~s~D~~i~ 299 (362)
..+..|..+|++++|++++++|++++.|+.|++||...+... ....+.++... +.++.|+++ ++++++.|++++
T Consensus 282 ~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 667889999999999999999999999999999999875421 23344555544 888888754 999999999999
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+|+.. ...++..+.+|...+.+ .|++. ....+.++++|+.|+.|++|++.
T Consensus 360 ~w~l~--~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 360 LWDLR--SGKSVGTYTGHSNLVRC-IFSPT-----LSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEEcc--CCcceeeecccCCccee-Eeccc-----ccCCCCeEEEEeCCceEEEEeCC
Confidence 99964 45678888999987533 33332 23556789999999999999996
No 52
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=5.6e-30 Score=216.74 Aligned_cols=237 Identities=22% Similarity=0.418 Sum_probs=193.1
Q ss_pred cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcE
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKI 90 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i 90 (362)
+..|..+|+++.++ +.+++||+.+|.||+|+.+-... ..+...+...|++++++++ ++++++.||+|
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV---------k~~~ahh~eaIRdlafSpnDskF~t~SdDg~i 204 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV---------KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTI 204 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh---------HHhhHhhhhhhheeccCCCCceeEEecCCCeE
Confidence 57899999999994 88999999999999998542110 0111234478899988753 59999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
++||.....+.. .+.+|.-.|.|++|+|...++|+||.|+.|++||
T Consensus 205 kiWdf~~~kee~----------------------------------vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 205 KIWDFRMPKEER----------------------------------VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred EEEeccCCchhh----------------------------------eeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 999986433210 1136788899999999999999999999999999
Q ss_pred CCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-CCCEEEEE
Q 044557 171 TSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSG 248 (362)
Q Consensus 171 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~ 248 (362)
.+++.|+.++. .|...|..+.|+|++. |++++.|..++++|+.+.+ -....++|...|+++.|+| ....+.+|
T Consensus 251 prSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk----El~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 251 PRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK----ELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred CCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH----HHHHhhcchhhheeeccccccccceeec
Confidence 99999998875 7999999999999987 8899999999999987543 2345678999999999999 55688899
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEee
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWR 302 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~ 302 (362)
+.||.|..|.+...++ +...-.+|...|.+++|.+ .+|++||.|+++|+|.
T Consensus 326 g~Dgsvvh~~v~~~~p---~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEP---LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cCCCceEEEecccccc---ccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999863222 2223457999999999975 5899999999999996
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-29 Score=200.35 Aligned_cols=238 Identities=22% Similarity=0.328 Sum_probs=191.3
Q ss_pred ceeEEEEEcC---ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 69 GAVKSLVVLA---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 69 ~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
.....+.+++ +.+++++.||++++||+...... ...+..|...|
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P---------------------------------i~~~kEH~~EV 107 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP---------------------------------IHKFKEHKREV 107 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCcc---------------------------------hhHHHhhhhhe
Confidence 3455566654 46999999999999996432210 01124688999
Q ss_pred eEEEEecCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCccee
Q 044557 146 SALALTKDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 146 ~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.++.+++.. +.++++|+|++|++|+...++.+.++. +|...|...+|+|.. -+++++.|+..++||++...+...
T Consensus 108 ~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~- 185 (311)
T KOG0277|consen 108 YSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS- 185 (311)
T ss_pred EEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-
Confidence 999998754 568888999999999999999999986 799999999999865 378999999999999886643221
Q ss_pred ehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcE
Q 044557 223 VDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTI 298 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i 298 (362)
+..|...+.++.|+. +...|++|+.|+.||.||+++-+.. +..+.+|.-.|+.+.++|. +|+|+|.|-++
T Consensus 186 ---i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 186 ---IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTV 259 (311)
T ss_pred ---EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc---ceeecCCceEEEEEecCcchhhHhhhccccceE
Confidence 567899999999997 6678999999999999999876543 4567899999999999874 89999999999
Q ss_pred EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 299 RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|||+.. +.-.++.+..-|++-|.++.|++-. +.++|+.++|..+.||+-
T Consensus 260 riw~~~-~~ds~~e~~~~HtEFv~g~Dws~~~--------~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 260 RIWDPE-RQDSAIETVDHHTEFVCGLDWSLFD--------PGQVASTGWDELLYVWNP 308 (311)
T ss_pred Eecccc-cchhhhhhhhccceEEecccccccc--------Cceeeecccccceeeecc
Confidence 999964 3344566778899999999887542 247999999999999984
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1e-27 Score=237.61 Aligned_cols=273 Identities=16% Similarity=0.298 Sum_probs=200.6
Q ss_pred CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCC
Q 044557 38 DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLG 115 (362)
Q Consensus 38 Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 115 (362)
+|-+++|+...... ..... ...+..+.+.|.++.+.++ .+++++.|++|++|+........... ..
T Consensus 457 ~gl~~~~~~~~~~~--~~~~~--~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~----~~---- 524 (793)
T PLN00181 457 EGLCKYLSFSKLRV--KADLK--QGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI----HY---- 524 (793)
T ss_pred hhhhhhhcccceEE--EEeec--cccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc----cc----
Confidence 67788887654221 10100 0111235677888888754 59999999999999975321000000 00
Q ss_pred chhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc
Q 044557 116 DRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS 194 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~ 194 (362)
.... ..+...+.+++|+|. +.+|++++.|++|++||+.+++.+..+. .|...|++++|+
T Consensus 525 ------------------~~~~-~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~ 584 (793)
T PLN00181 525 ------------------PVVE-LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYS 584 (793)
T ss_pred ------------------ceEE-ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEc
Confidence 0000 123456888999874 7899999999999999999988877764 799999999999
Q ss_pred C-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe-cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe
Q 044557 195 D-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS-CDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271 (362)
Q Consensus 195 ~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 271 (362)
| ++. +++|+.||+|++||+.++..... +. +...|.++.|+ ++|.+|++|+.|+.|++||++..... +..
T Consensus 585 p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~----~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---~~~ 656 (793)
T PLN00181 585 SADPTLLASGSDDGSVKLWSINQGVSIGT----IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---LCT 656 (793)
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCcEEEE----Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---ceE
Confidence 6 555 88999999999999987653322 22 34578899995 57999999999999999999764322 234
Q ss_pred ecCccceeEEEEEe-CCeEEEeeCCCcEEEeeCCCC----ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 272 LRGHTKSILCMAVV-SDLVCSGSADKTIRIWRGIDR----NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 272 ~~~h~~~v~~~~~~-~~~~~s~s~D~~i~~W~~~~~----~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
+.+|...|.++.|. +..++++|.|++|++|+.... ...++..+.+|...+..++|++++ .+|++||
T Consensus 657 ~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~---------~~lasgs 727 (793)
T PLN00181 657 MIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD---------GYIATGS 727 (793)
T ss_pred ecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC---------CEEEEEe
Confidence 67899999999986 458999999999999996421 235678899999999999997653 4799999
Q ss_pred CCCcEEEEecccC
Q 044557 347 LDCDIKVWQISFP 359 (362)
Q Consensus 347 ~D~~i~~W~~~~~ 359 (362)
.|++|++|+...+
T Consensus 728 ~D~~v~iw~~~~~ 740 (793)
T PLN00181 728 ETNEVFVYHKAFP 740 (793)
T ss_pred CCCEEEEEECCCC
Confidence 9999999997544
No 55
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.5e-29 Score=200.24 Aligned_cols=280 Identities=24% Similarity=0.382 Sum_probs=211.2
Q ss_pred eeecccCccceeeeEec-----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 12 LTTLKGHNSYVSSLALA-----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~-----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
-.+..||+.+|..|+|+ |-+|++++.|+.--+-+-++ +.+...|. .|++.|.+..+..+ +.+++
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t--gdwigtfe-------ghkgavw~~~l~~na~~aasa 77 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT--GDWIGTFE-------GHKGAVWSATLNKNATRAASA 77 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC--CCcEEeee-------ccCcceeeeecCchhhhhhhh
Confidence 34567899999999995 55799999999877765444 23333333 35677766655544 57888
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|=+.++||.-++...+. ..|..-|.+++|+.|.++|++|+.++
T Consensus 78 aadftakvw~a~tgdelhs-----------------------------------f~hkhivk~~af~~ds~~lltgg~ek 122 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELHS-----------------------------------FEHKHIVKAVAFSQDSNYLLTGGQEK 122 (334)
T ss_pred cccchhhhhhhhhhhhhhh-----------------------------------hhhhheeeeEEecccchhhhccchHH
Confidence 9999999999765442110 24777889999999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
.+||+|++..+....-..+|.+.|..+-|+...+ +++.+.|++||+||..++...+++. .+.+|+++.++++|.
T Consensus 123 llrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-----~~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 123 LLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-----FNSPVTSLEVSQDGR 197 (334)
T ss_pred HhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-----cCCCCcceeeccCCC
Confidence 9999999987644333458999999999986554 8888999999999999987666552 467899999999998
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEe-cCCCCc
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVL-EGHRGP 320 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l-~~h~~~ 320 (362)
+|.++. -+.|.+||..+-. ++...+. ...|.+-+..| ++++.|++|..++.||... +..+..+ +||-++
T Consensus 198 ilTia~-gssV~Fwdaksf~----~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~T--geEi~~~nkgh~gp 269 (334)
T KOG0278|consen 198 ILTIAY-GSSVKFWDAKSFG----LLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNT--GEEIGSYNKGHFGP 269 (334)
T ss_pred EEEEec-CceeEEecccccc----ceeeccC-ccccccccccCCCceEEecCcceEEEEEeccC--CceeeecccCCCCc
Confidence 877664 4679999987532 2222221 23355545544 5899999999999998643 3345554 899999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|.|+.|+|++. +-+|||.||+||||+..
T Consensus 270 VhcVrFSPdGE---------~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 270 VHCVRFSPDGE---------LYASGSEDGTIRLWQTT 297 (334)
T ss_pred eEEEEECCCCc---------eeeccCCCceEEEEEec
Confidence 99999998764 57899999999999984
No 56
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.3e-29 Score=207.53 Aligned_cols=275 Identities=21% Similarity=0.335 Sum_probs=198.1
Q ss_pred ccceeeecccCccceeeeEecCc---EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALAGK---FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSA 84 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~~~---~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~ 84 (362)
....+..|.||.+.|.+++=..+ .++||+.||.|++||+..-.+ . ..+..|.+.|..|.+....++++
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--~-------~~f~AH~G~V~Gi~v~~~~~~tv 125 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--I-------RTFKAHEGLVRGICVTQTSFFTV 125 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh--h-------heeecccCceeeEEecccceEEe
Confidence 44466789999999999998643 589999999999999865321 1 12345678899998888889999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhh-hhccccccceeeee----eeeEEeeecCceeEEEEecCCC-EEE
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAI-KLLMPKNHVQIRRH----KTCTWVHHVDAVSALALTKDET-LLY 158 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~-~l~ 158 (362)
+.|.+|+.|.++.. +.+........+........ ...+....+.+++. ....+..-.+.|.++.|+|... +|+
T Consensus 126 gdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred cCCcceeeeeccCC-cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 99999999997652 11100000000000000000 01111222334433 3334444567899999999764 788
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
+|+.|+.|.+||+++..+++++.. ...-+.++|+|++. ++++++|..+..||+.... .......+|.+.|.+++
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSAVMDVD 279 (433)
T ss_pred eeccCCceEEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhhc---ccchhhcccceeEEEec
Confidence 888999999999999988887653 23457899999775 8899999999999987543 44566788999999999
Q ss_pred EecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc---ceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 238 LSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT---KSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 238 ~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
|||.|+-+++||.|.+||||....+...- -.|+ +.|.|+.|+-+ +++|||.|+.||+|+.
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRd------iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRD------IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchh------hhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 99999999999999999999987533211 1233 45789999754 9999999999999985
No 57
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=7.8e-28 Score=196.44 Aligned_cols=246 Identities=23% Similarity=0.405 Sum_probs=194.5
Q ss_pred EeecceeEEEEEcCce--eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec
Q 044557 65 AVGKGAVKSLVVLADK--LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV 142 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~~--l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 142 (362)
..|++.|..+.+.++. +++++.|..|.+|++...+.. . ....+|.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN------~---------------------------~~lkgHs 90 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN------F---------------------------WVLKGHS 90 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc------e---------------------------eeecccc
Confidence 3467888888887764 999999999999997543310 0 0123799
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
+.|..+.|.+|++.++++|.|++|+.||++++++.+... .|+..|+++.-+.-|. +.+++.||++|+||.......+
T Consensus 91 gAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 91 GAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred ceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchhh
Confidence 999999999999999999999999999999999999885 7999999998554453 5689999999999998654433
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i 298 (362)
.+ ..+..++++.|..++..+++|+-|+.|++||++.++. +..+.||.+.|+.+..++ .++.+-+.|.++
T Consensus 170 t~-----~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 170 TF-----ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTV 240 (338)
T ss_pred cc-----ccceeEEEEEecccccceeeccccCceeeeccccCcc----eEEeecccCceeeEEeccCCCccccccccceE
Confidence 22 2356799999999999999999999999999986553 456889999999998875 489999999999
Q ss_pred EEeeCC--CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 299 RIWRGI--DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 299 ~~W~~~--~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++||.. .....|++.+.||.-.... +.-.|.|++++..+..||.|..+.+||..+
T Consensus 241 rvwd~rp~~p~~R~v~if~g~~hnfek-----nlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGHIHNFEK-----NLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred EEEEecccCCCCceEEEeecchhhhhh-----hcceeeccCCCCccccccccceEEEeeccc
Confidence 999953 2345678888877543211 111244556667799999999999999854
No 58
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=208.04 Aligned_cols=309 Identities=18% Similarity=0.277 Sum_probs=211.0
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCceeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l~s 83 (362)
+..+-..|++|+..|.+++++ |-.|+|||.|.+|++||+......... | ..+.......+.++.+ .++.++.
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-f---r~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-F---RQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-h---hccCcccccccceeeecCCCCeEEE
Confidence 444556799999999999995 789999999999999998765432221 1 1111122345555554 4567888
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEEC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSW 162 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~ 162 (362)
.+.....+++|-+.... +... ..+-.+..+ +...+|...++|.+|+|..+ .|+|++.
T Consensus 232 vsg~aqakl~DRdG~~~-------~e~~-KGDQYI~Dm--------------~nTKGHia~lt~g~whP~~k~~FlT~s~ 289 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEI-------VEFS-KGDQYIRDM--------------YNTKGHIAELTCGCWHPDNKEEFLTCSY 289 (641)
T ss_pred EecCcceeEEccCCcee-------eeee-ccchhhhhh--------------hccCCceeeeeccccccCcccceEEecC
Confidence 88888899998653221 0000 001111111 11247889999999999865 7999999
Q ss_pred CCcEEEEECCCceEEEee-----eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccc--cee
Q 044557 163 DRTIKIWRTSDFKCLESI-----TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS--GIN 234 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~-----~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~--~v~ 234 (362)
||++||||++..+....+ ..+..-++..++|+++|. +++|..||.|.+|+....... .....-..|.. .|+
T Consensus 290 DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~It 368 (641)
T KOG0772|consen 290 DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDIT 368 (641)
T ss_pred CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-cceEeeeccCCCCcee
Confidence 999999999876532222 123344789999999998 788999999999997443221 22233456766 899
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee------CCCcEEEeeCCCC
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS------ADKTIRIWRGIDR 306 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s------~D~~i~~W~~~~~ 306 (362)
+|+||+||++|++-|.|+++++||++..+..+.....+.. .-.-+.++|+++ +++||+ .-+++.+|+ ..
T Consensus 369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d--~~ 445 (641)
T KOG0772|consen 369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD--RM 445 (641)
T ss_pred EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc-cCCCCccccCCCceEEEecccccCCCCCceEEEEe--cc
Confidence 9999999999999999999999999875543322111111 112345667765 677765 346788887 34
Q ss_pred ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 307 NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 307 ~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
++..++.+.--...|..++|+|.-++ |..|+.||+++++-
T Consensus 446 t~d~v~ki~i~~aSvv~~~WhpkLNQ---------i~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 446 TLDTVYKIDISTASVVRCLWHPKLNQ---------IFAGSGDGTAHVYY 485 (641)
T ss_pred ceeeEEEecCCCceEEEEeecchhhh---------eeeecCCCceEEEE
Confidence 56667776655777888888876543 77888899999874
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1e-28 Score=196.83 Aligned_cols=240 Identities=21% Similarity=0.370 Sum_probs=194.6
Q ss_pred ceeeecccCccceeeeEecC--cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALAG--KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~~--~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
-.+.||.||.+.|++..++. ..-|+++.|-+.++||.-++.. ...+ .|+..|.++++..| +|++|+
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde--lhsf--------~hkhivk~~af~~ds~~lltgg 119 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE--LHSF--------EHKHIVKAVAFSQDSNYLLTGG 119 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh--hhhh--------hhhheeeeEEecccchhhhccc
Confidence 36889999999999999964 4679999999999999765431 1111 13556777888765 599999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.+..+|+||++..+... .++.+|.+.|..+-|....+.+++.+.|++
T Consensus 120 ~ekllrvfdln~p~App---------------------------------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 120 QEKLLRVFDLNRPKAPP---------------------------------KEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hHHHhhhhhccCCCCCc---------------------------------hhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 99999999997644211 122468889999999888889999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
||+||.+++..++.+.. ..+|+++.++++|++++-+..+.|+.||..+-...... .-+..|.+.+.+|+...+
T Consensus 167 VRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~-----k~P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSY-----KMPCNVESASLHPKKEFF 239 (334)
T ss_pred eEEEEeccCcEEEEEec--CCCCcceeeccCCCEEEEecCceeEEeccccccceeec-----cCccccccccccCCCceE
Confidence 99999999999988863 45899999999999999999999999998765433221 135568899999999999
Q ss_pred EEEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 246 YSGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
++|+.|..++.||..+++. ++. .++|.++|.|+.|+|+ ..++||+||+||||..
T Consensus 240 VaGged~~~~kfDy~TgeE----i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEE----IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred EecCcceEEEEEeccCCce----eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 9999999999999987653 233 4899999999999875 8999999999999974
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1e-28 Score=213.31 Aligned_cols=245 Identities=21% Similarity=0.361 Sum_probs=192.8
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc-eeEEEEEcC---cee
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG-AVKSLVVLA---DKL 81 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~---~~l 81 (362)
+++|++|+.||..+|.++.|+ |..++|+|.|++||+||++++.... ..+.+ ...++.+.+ +.+
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~-----------~f~~~~~~~cvkf~pd~~n~f 315 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS-----------RFHLDKVPTCVKFHPDNQNIF 315 (503)
T ss_pred CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE-----------EEecCCCceeeecCCCCCcEE
Confidence 488999999999999999995 8899999999999999998764211 11222 334444433 458
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++|+.|+.|+.||++.++. ++++..|.+.|..+.|-++++.+++.+
T Consensus 316 l~G~sd~ki~~wDiRs~kv----------------------------------vqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 316 LVGGSDKKIRQWDIRSGKV----------------------------------VQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred EEecCCCcEEEEeccchHH----------------------------------HHHHHhhhhheeeeEEccCCceEeeec
Confidence 8999999999999986541 112235788999999999999999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc--eeEEEE
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG--INALAL 238 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~--v~~i~~ 238 (362)
+|++++||+.+....+..+...+...+.++..+|++. ++.=+.|+.|.+|.....- .......+.+|..+ -..+.|
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEEE
Confidence 9999999999887766655544555678899999998 5566889999999865432 22234456777643 456789
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEee
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWR 302 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~ 302 (362)
||||.+|++|+.||.+.+||..+-. ++..+++|.+.+..+.|.+ ..+||++.||.|++|+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~k----l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTK----LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhh----hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999987532 5677889999999999865 4899999999999995
No 61
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=203.82 Aligned_cols=261 Identities=24% Similarity=0.412 Sum_probs=195.9
Q ss_pred EEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 64 VAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
+..|.-++.++.+.++ +.++++.|++|.-|++..+......+.+-..+.. -. ....... ..|
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~-------~~-----~~~k~~r----~~h 201 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS-------HG-----NPLKESR----KGH 201 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh-------cc-----CCCCccc----ccc
Confidence 3445667888888776 7999999999999998765532111111000000 00 0000000 268
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCCCCCcc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
...+.+++.++|++|||+|+.|..|.||+.++.+.++.+. +|.+.|.+++|-.+- ++++++.|++|++|+++..
T Consensus 202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~---- 276 (479)
T KOG0299|consen 202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL---- 276 (479)
T ss_pred cceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHh----
Confidence 8899999999999999999999999999999999888765 899999999997554 5999999999999998643
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-CeEEEeeCCCcEE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-DLVCSGSADKTIR 299 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~s~s~D~~i~ 299 (362)
.++.++.+|+..|..|....-++.+-+|+.|+++++|++.+.. ++ .+.+|.+.+.|++|.+ +.++|||.||.|.
T Consensus 277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---ql--ifrg~~~sidcv~~In~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---QL--IFRGGEGSIDCVAFINDEHFVSGSDNGSIA 351 (479)
T ss_pred HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc---ee--eeeCCCCCeeeEEEecccceeeccCCceEE
Confidence 4677888999999999988778888888899999999995432 12 2567888999999975 4899999999999
Q ss_pred EeeCCCCceeeeeEe----------cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 300 IWRGIDRNYTCLAVL----------EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l----------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+|+....+.-....+ ..+..+|++++..|.. .++||||++|.||+|.+.-.
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s---------dL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS---------DLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccC---------ceEEecCCCCceEEEEecCC
Confidence 999644332111111 1233489999987654 47999999999999998643
No 62
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.7e-27 Score=194.03 Aligned_cols=330 Identities=19% Similarity=0.284 Sum_probs=235.5
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
+..++.+.|.||.+.|+.++.. ...+.|+|.|.+.+||.++++.+ ...+ ..|.+.|.+|.+.+. .++
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C--L~~Y-------~GH~GSVNsikfh~s~~L~l 206 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC--LATY-------TGHTGSVNSIKFHNSGLLLL 206 (481)
T ss_pred eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc--eeee-------cccccceeeEEeccccceEE
Confidence 3567888899999999999985 34899999999999999987543 2222 235678888888654 488
Q ss_pred EEecCCcEEEEecCCCCCCcccc-----eeeeeccCCCchhhhhccc--cccceeeeeeeeEEeeecCceeEEEEecCCC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKY-----TRLATLPTLGDRAIKLLMP--KNHVQIRRHKTCTWVHHVDAVSALALTKDET 155 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 155 (362)
+++.|++..+|...-+-+..+.. ..-...... +.-...... .......+...+.+-+|...|.+..|-..++
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s-De~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS-DEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc-cccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence 99999999999732111000000 000000000 000000000 0001112234455678999999999999999
Q ss_pred EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee
Q 044557 156 LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN 234 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~ 234 (362)
.++++++|++-.+||+++++.++.+. +|....+.++-+|..+ +++.+.|.+.++||+...- .....+++|...|+
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI---~sV~VFQGHtdtVT 361 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI---QSVAVFQGHTDTVT 361 (481)
T ss_pred eeeeeeccccceeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhhc---ceeeeeccccccee
Confidence 99999999999999999999998775 8999999999999887 6689999999999997432 23567889999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeee
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
++.|.-| ..+++|+.|.+|++||+++-...+..+.. ...+..++.+. ..++---.++.||+||+.......+.
T Consensus 362 S~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 362 SVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred EEEEecC-CceeecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 9999864 67899999999999999875544333321 23455566653 36777778899999997653332222
Q ss_pred --EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCccC
Q 044557 313 --VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLVR 362 (362)
Q Consensus 313 --~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~ 362 (362)
.-.||..-|.|++|..+... .-|.+++-|..+.=|++..|+.+
T Consensus 437 rtsRqgHrRMV~c~AW~eehp~-------cnLftcGFDR~v~gW~in~p~~~ 481 (481)
T KOG0300|consen 437 RTSRQGHRRMVTCCAWLEEHPA-------CNLFTCGFDRMVAGWKINTPTSN 481 (481)
T ss_pred cccccccceeeeeeeccccCcc-------cccccccccceeeeeEecccCCC
Confidence 34699999999999866432 23779999999999999998753
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.6e-27 Score=185.83 Aligned_cols=241 Identities=19% Similarity=0.357 Sum_probs=193.2
Q ss_pred eEEeecceeEEEEEc--CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 63 IVAVGKGAVKSLVVL--ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 63 ~~~~~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
++..++++|..+.++ +++.++++.|.+|++|+...+. ...++.+
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~----------------------------------liktYsg 57 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA----------------------------------LIKTYSG 57 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccc----------------------------------eeeeecC
Confidence 344567888888765 5679999999999999864332 1224457
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
|...|..++.+.|...|++|+.|+.+.+||+++++.++.+. +|...|+.++|+.+.. +++|+-|.++++||..+...
T Consensus 58 hG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~- 135 (307)
T KOG0316|consen 58 HGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF- 135 (307)
T ss_pred CCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCC-
Confidence 88899999999999999999999999999999999999985 8999999999998887 78999999999999876543
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCc
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKT 297 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~ 297 (362)
+.+..+......|.+|.++ +..|++|+.||++|.||++.++ ..... -..+|+|+.++++ ..+.++.|++
T Consensus 136 -ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~----l~sDy--~g~pit~vs~s~d~nc~La~~l~st 206 (307)
T KOG0316|consen 136 -EPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT----LSSDY--FGHPITSVSFSKDGNCSLASSLDST 206 (307)
T ss_pred -CccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce----eehhh--cCCcceeEEecCCCCEEEEeeccce
Confidence 3455566677789888875 6889999999999999998654 22222 2456888888754 8899999999
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+|+-| ..+++.++.+.||++.=..+..... .....+++||.||.+.+||+-
T Consensus 207 lrLlD--k~tGklL~sYkGhkn~eykldc~l~-------qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 207 LRLLD--KETGKLLKSYKGHKNMEYKLDCCLN-------QSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred eeecc--cchhHHHHHhcccccceeeeeeeec-------ccceeEEeccCCceEEEEEec
Confidence 99998 4567889999999987665544322 222468999999999999984
No 64
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.7e-26 Score=187.28 Aligned_cols=254 Identities=18% Similarity=0.317 Sum_probs=184.7
Q ss_pred ccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEE
Q 044557 16 KGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVW 93 (362)
Q Consensus 16 ~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w 93 (362)
.+|.+-|.++.| +|+.+||||.|++|+|||.+..++.... +
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~---------------------------T---------- 52 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC---------------------------T---------- 52 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE---------------------------e----------
Confidence 579999999998 4999999999999999996543221100 0
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE-ec-CCCEEEEEECCCcEEEEEC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL-TK-DETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~-~~~~l~s~s~d~~i~iwd~ 171 (362)
..+..|.+.|.-+.| +| -|+.+|++|.|++++||.-
T Consensus 53 ------------------------------------------s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 53 ------------------------------------------SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred ------------------------------------------eeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 011124445555555 22 4789999999999999964
Q ss_pred CC---------ceEEEeeeccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeCCCCCCcc--eeehh-------hhccc
Q 044557 172 SD---------FKCLESITNAHDDAINAVALSDDG---DVYTGSADKKIKVWRRSPGNKKH--SLVDV-------LERHN 230 (362)
Q Consensus 172 ~~---------~~~~~~~~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~~~~~~~~--~~~~~-------~~~h~ 230 (362)
.. +....++. .....|++|.|.|.. ++++++.||.+|||+.-+..... ++... ...+.
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred cccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 11 11222333 456789999999864 48899999999999865432211 12222 23567
Q ss_pred cceeEEEEecC---CCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC------eEEEeeCCC
Q 044557 231 SGINALALSCD---GSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD------LVCSGSADK 296 (362)
Q Consensus 231 ~~v~~i~~s~~---~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~s~s~D~ 296 (362)
.+..|+.|+|. ..+|+.|+.+ +.+.||...+...+...+..+.+|+..|+.++|.|+ ++|+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 78889999974 4577777766 478999887766677778889999999999999764 699999999
Q ss_pred cEEEeeCCC------------------CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 297 TIRIWRGID------------------RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 297 ~i~~W~~~~------------------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|+||++.. -....+..+.+|...|+.+.|. -+|.+|+|.|+||+||+|+..|
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN---------mtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN---------MTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe---------eeeeEEeecCCCceeeehhhhh
Confidence 99998541 0124456788999999999884 4567899999999999998765
Q ss_pred C
Q 044557 359 P 359 (362)
Q Consensus 359 ~ 359 (362)
.
T Consensus 320 ~ 320 (361)
T KOG2445|consen 320 N 320 (361)
T ss_pred h
Confidence 4
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=191.40 Aligned_cols=234 Identities=21% Similarity=0.309 Sum_probs=181.6
Q ss_pred ccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeEEEecCCcEEE
Q 044557 19 NSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIRV 92 (362)
Q Consensus 19 ~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~ 92 (362)
++.+..|+|+ .+.+++++.||++|+||+.....++ .+...|+..|.++.++. +.++++++|++|++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi--------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKL 131 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPI--------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKL 131 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcch--------hHHHhhhhheEEeccccccceeEEeeccCCceEe
Confidence 5667777884 4689999999999999964332211 12233566788887653 34778899999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEECCCcEEEEEC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~ 171 (362)
|+.+.+. ..+++.+|..-|...+|+|- .++|+++|.|+++++||+
T Consensus 132 W~~~r~~----------------------------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdv 177 (311)
T KOG0277|consen 132 WDPNRPN----------------------------------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDV 177 (311)
T ss_pred ecCCCCc----------------------------------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEe
Confidence 9876432 12345678889999999984 579999999999999998
Q ss_pred CCc-eEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-CCEEEE
Q 044557 172 SDF-KCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD-GSVLYS 247 (362)
Q Consensus 172 ~~~-~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s 247 (362)
+.. +.+. + ..|...+.++.|+.-.. ++||+.|+.|+.||+.... ..+..+.+|...|..+.|||- ...|++
T Consensus 178 r~~gk~~~-i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~~~lLaS 252 (311)
T KOG0277|consen 178 RSPGKFMS-I-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHHASLLAS 252 (311)
T ss_pred cCCCceeE-E-EeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCCceEEEEEecCcchhhHhhh
Confidence 764 4333 3 47888999999986543 8899999999999998654 335567899999999999995 468999
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCeEEEeeCCCcEEEee
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDLVCSGSADKTIRIWR 302 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D~~i~~W~ 302 (362)
++.|.++|+||.+.+.. .+++.+-|+..+..+.|+ +..+|+++-|..+++|+
T Consensus 253 asYDmT~riw~~~~~ds---~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 253 ASYDMTVRIWDPERQDS---AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccccceEEecccccchh---hhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 99999999999875443 344566789888888775 56999999999999997
No 66
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.9e-27 Score=187.89 Aligned_cols=239 Identities=20% Similarity=0.316 Sum_probs=183.2
Q ss_pred EEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--
Q 044557 75 VVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-- 152 (362)
Q Consensus 75 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-- 152 (362)
.+++.+|++++.|++|+++.+.+..+. ....++.+|.++|.-++|..
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s-------------------------------~ll~~L~Gh~GPVwqv~wahPk 68 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQS-------------------------------KLLAELTGHSGPVWKVAWAHPK 68 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCc-------------------------------eeeeEecCCCCCeeEEeecccc
Confidence 456778999999999999998754321 11234458999999999843
Q ss_pred CCCEEEEEECCCcEEEEECCCceEE--EeeeccCcccEEEEEEcCCCc---EEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCL--ESITNAHDDAINAVALSDDGD---VYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~h~~~v~~v~~~~~~~---~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
.|.+||+++.||.|.||+-++++-- ... ..|...|++|+|.|.+. |+.++.||+|.|.+.+... .........
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~ 146 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVF 146 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-Cccchhhhh
Confidence 7899999999999999998877422 222 26889999999999864 7789999999999877642 122233456
Q ss_pred ccccceeEEEEecC---C-----------CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC------
Q 044557 228 RHNSGINALALSCD---G-----------SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD------ 287 (362)
Q Consensus 228 ~h~~~v~~i~~s~~---~-----------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------ 287 (362)
.|.-+|++++|.|. | +.|++||.|+.|++|+..++ .......+.+|.+.|+.+++.|.
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s 224 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKS 224 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCce
Confidence 79999999999985 4 57999999999999998764 33444568999999999998753
Q ss_pred eEEEeeCCCcEEEeeCCCCce-eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 288 LVCSGSADKTIRIWRGIDRNY-TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~~~-~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.++|+|+||++.||....... -....|+.-...++.++|++.+ .+|+.++.|+.|.+|.-+
T Consensus 225 ~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG---------n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 225 TIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG---------NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccc---------cEEEEecCCcEEEEEEeC
Confidence 699999999999997432111 1122344456789999998654 579999999999999743
No 67
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=6.1e-26 Score=210.95 Aligned_cols=200 Identities=14% Similarity=0.239 Sum_probs=148.0
Q ss_pred EeeecCceeEEEEecC-CCEEEEEECCCcEEEEECCCce--------EEEeeeccCcccEEEEEEcCCCc--EEEEeCCC
Q 044557 138 WVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFK--------CLESITNAHDDAINAVALSDDGD--VYTGSADK 206 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg 206 (362)
+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+.. ++..+ .+|...|.+++|+|++. +++++.|+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 3478999999999997 7899999999999999997532 12223 47999999999999885 46889999
Q ss_pred eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE----
Q 044557 207 KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM---- 282 (362)
Q Consensus 207 ~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~---- 282 (362)
+|++||+.++..... + .|...|.+++|+|+|.+|++++.|+.|++||++++. .+..+.+|.+.+.+.
T Consensus 149 tIrIWDl~tg~~~~~----i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~----~i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 149 FVNIWDIENEKRAFQ----I-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE----IASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred eEEEEECCCCcEEEE----E-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc----EEEEEecccCCceeEEEEe
Confidence 999999987653322 2 255789999999999999999999999999998643 345677888654322
Q ss_pred -EEeC--CeEEEeeCCC----cEEEeeCCCCceeeeeEe--cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 283 -AVVS--DLVCSGSADK----TIRIWRGIDRNYTCLAVL--EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 283 -~~~~--~~~~s~s~D~----~i~~W~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
.+++ ++++|++.|+ +|+|||... ...++..+ ..+.+.+..... .+++.++++|+.|++||+
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~-~~~pl~~~~ld~~~~~L~p~~D---------~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKN-TTSALVTMSIDNASAPLIPHYD---------ESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCC-CCCceEEEEecCCccceEEeee---------CCCCCEEEEEECCCeEEE
Confidence 2223 4788877764 799999643 22334433 333333332221 245678889999999999
Q ss_pred Eecc
Q 044557 354 WQIS 357 (362)
Q Consensus 354 W~~~ 357 (362)
|++.
T Consensus 290 ~e~~ 293 (568)
T PTZ00420 290 YQHS 293 (568)
T ss_pred EEcc
Confidence 9985
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=6.9e-28 Score=204.40 Aligned_cols=285 Identities=24% Similarity=0.352 Sum_probs=213.1
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
.+-++...|..|.+.|.++.|- +..|+||+.|..|++|+......++.. .+....+++.++.+..+ .++
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~-------tLaGs~g~it~~d~d~~~~~~i 235 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIS-------TLAGSLGNITSIDFDSDNKHVI 235 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhh-------hhhccCCCcceeeecCCCceEE
Confidence 3455667788999999999993 479999999999999997654322222 22233467888887654 388
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|+.+++|+++.... ..++.+|++.|+++.|......+++|+.
T Consensus 236 Aas~d~~~r~Wnvd~~r~----------------------------------~~TLsGHtdkVt~ak~~~~~~~vVsgs~ 281 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRL----------------------------------RHTLSGHTDKVTAAKFKLSHSRVVSGSA 281 (459)
T ss_pred eecCCCceeeeeccchhh----------------------------------hhhhcccccceeeehhhccccceeeccc
Confidence 899999999999875431 1233479999999999877766999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
|.+|++||+....|.+++.. ...+..|+.+ ...+++|-.|++|+.||..+....... .. .+.|+++..+++|
T Consensus 282 DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv----~~-gg~vtSl~ls~~g 353 (459)
T KOG0288|consen 282 DRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSV----PL-GGRVTSLDLSMDG 353 (459)
T ss_pred cchhhhhhhhhhheeccccc--cccccceEec-ceeeeecccccceEEEeccCCceeeEe----ec-CcceeeEeeccCC
Confidence 99999999999888887753 3455666655 334788899999999998876544332 22 3489999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc----ceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT----KSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~----~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
..|.+++.|.++.+.|++..+ +...+.... ...+.+.|+| +++++||.||.|+||+... .++.+.+..
T Consensus 354 ~~lLsssRDdtl~viDlRt~e----I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t--gKlE~~l~~ 427 (459)
T KOG0288|consen 354 LELLSSSRDDTLKVIDLRTKE----IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT--GKLEKVLSL 427 (459)
T ss_pred eEEeeecCCCceeeeeccccc----EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC--ceEEEEecc
Confidence 999999999999999998643 222222211 1245556665 4999999999999999754 455666654
Q ss_pred CCC--cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 317 HRG--PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 317 h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
-.+ .|++++|.|.+ ..|++++.++.+.+|.
T Consensus 428 s~s~~aI~s~~W~~sG---------~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 428 STSNAAITSLSWNPSG---------SGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCCcceEEEEEcCCC---------chhhcccCCcceEecC
Confidence 333 69999997654 4588999999999994
No 69
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.9e-27 Score=187.94 Aligned_cols=246 Identities=22% Similarity=0.324 Sum_probs=187.2
Q ss_pred ccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCc-ccceeeeccceeEEeecceeEEEEEc----CceeEEEecCC
Q 044557 16 KGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSS-ELDQEFLSNNNIVAVGKGAVKSLVVL----ADKLFSAHQDH 88 (362)
Q Consensus 16 ~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~l~s~~~dg 88 (362)
.+|.+.|.++.. +|+.||||++|++|||+....... .+..+ +..|.+++..+.+. +..|+++++||
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~-------L~Gh~GPVwqv~wahPk~G~iLAScsYDg 80 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAE-------LTGHSGPVWKVAWAHPKFGTILASCSYDG 80 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeE-------ecCCCCCeeEEeecccccCcEeeEeecCc
Confidence 579999988766 699999999999999999876432 22222 34578899988774 45699999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC--CCEEEEEECCCcE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDRTI 166 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~i 166 (362)
.|-+|+.+++.- .+ ......|...|++++|.|. |-.|++++.||.|
T Consensus 81 kVIiWke~~g~w-----~k---------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~v 128 (299)
T KOG1332|consen 81 KVIIWKEENGRW-----TK---------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV 128 (299)
T ss_pred eEEEEecCCCch-----hh---------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence 999998765431 11 1122358889999999876 4689999999999
Q ss_pred EEEECCCc--eEEEeeeccCcccEEEEEEcCC---C------------cEEEEeCCCeEEEEeCCCCCCcceeehhhhcc
Q 044557 167 KIWRTSDF--KCLESITNAHDDAINAVALSDD---G------------DVYTGSADKKIKVWRRSPGNKKHSLVDVLERH 229 (362)
Q Consensus 167 ~iwd~~~~--~~~~~~~~~h~~~v~~v~~~~~---~------------~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h 229 (362)
.|.+.+.. -.-..+...|...|++++|.|. | +|++|+.|+.|+||+.+++. ..+...+.+|
T Consensus 129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H 206 (299)
T KOG1332|consen 129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGH 206 (299)
T ss_pred EEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhc
Confidence 99987653 3344456689999999999875 2 38999999999999998763 3445568899
Q ss_pred ccceeEEEEecCC----CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE--eCCeEEEeeCCCcEEEeeC
Q 044557 230 NSGINALALSCDG----SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 230 ~~~v~~i~~s~~~----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~s~s~D~~i~~W~~ 303 (362)
...|+.++|+|.- .+|+++|.||++.+|....+.+ ......++.-...+..+.| ++++|+.++.|+.|.+|+.
T Consensus 207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e-~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE-PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 9999999999953 6899999999999998764322 2222223333455666666 4679999999999999984
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=3.4e-26 Score=191.41 Aligned_cols=242 Identities=19% Similarity=0.269 Sum_probs=180.7
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCceeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l~s~ 84 (362)
.-.+..|.||.++|+++.|+ |.+||||+.+|.|+||+..+....... .. .-..+.=+.+ .+..|+.|
T Consensus 96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~--~~-------e~~dieWl~WHp~a~illAG 166 (399)
T KOG0296|consen 96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL--DQ-------EVEDIEWLKWHPRAHILLAG 166 (399)
T ss_pred CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe--ec-------ccCceEEEEecccccEEEee
Confidence 33567789999999999994 899999999999999998764321111 00 0011111122 23458999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.||.+.+|.+.++.. ...+.+|..++++=.|.|+|+.++++..||
T Consensus 167 ~~DGsvWmw~ip~~~~----------------------------------~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQAL----------------------------------CKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred cCCCcEEEEECCCcce----------------------------------eeEecCCCCCcccccccCCCceEEEEecCc
Confidence 9999999999865321 123357888899999999999999999999
Q ss_pred cEEEEECCCceEEEeeec--------------------------------------------------cCcccEEEEEEc
Q 044557 165 TIKIWRTSDFKCLESITN--------------------------------------------------AHDDAINAVALS 194 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~--------------------------------------------------~h~~~v~~v~~~ 194 (362)
+|++||..+++++..+.. .++..+.++.+.
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 999999988776554420 122223334443
Q ss_pred CCC---c-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEE
Q 044557 195 DDG---D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVG 270 (362)
Q Consensus 195 ~~~---~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 270 (362)
|.. . .+.|+-||+|.|||+.....++.+ .|..+|+.+.|-+ ..+|++++.+|.|+.||.++++ ...
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-----~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~----l~~ 362 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-----EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ----LKF 362 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheec-----cCCCceEEEEEcC-cchheeeccCceEEeeeccccc----eEE
Confidence 332 2 356888999999999876544333 5888999999998 7899999999999999999865 456
Q ss_pred eecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 271 ALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 271 ~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
.+.||...|++++++++ +++|+|.|++.++++.
T Consensus 363 ~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 363 TYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 78899999999999765 8999999999999974
No 71
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.4e-26 Score=198.83 Aligned_cols=255 Identities=24% Similarity=0.319 Sum_probs=190.9
Q ss_pred cCccceeeeEe---cCcEEEEecCCCeEEEeecCCCCcccce--eeeccceeEEeecceeEEEEEcC---ceeEEEecCC
Q 044557 17 GHNSYVSSLAL---AGKFLYTGSSDNEVRSWDCNTFSSELDQ--EFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDH 88 (362)
Q Consensus 17 gH~~~V~~l~~---~~~~l~t~s~Dg~i~vWd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg 88 (362)
-|.+.|..+.. ....+||++..+.|.|||.......... ++. ....+..|......+.++. ..|++++.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~-Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECR-PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCC-CceEEEeecccccccccccccceeEeeccCCC
Confidence 38888888887 3678999999999999998764322111 111 1233455555455566653 3599999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEECCCcEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVSWDRTIK 167 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~ 167 (362)
+|.+||++......... .....+.+|.+.|..++|++- ..+|++++.|+.+.
T Consensus 201 ~i~lwdi~~~~~~~~~~---------------------------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~ 253 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVV---------------------------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM 253 (422)
T ss_pred cEEEEeccccccCCccc---------------------------cceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence 99999997543210000 011223579999999999884 56899999999999
Q ss_pred EEECCC--ceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-
Q 044557 168 IWRTSD--FKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG- 242 (362)
Q Consensus 168 iwd~~~--~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~- 242 (362)
|||+++ .++.. ...+|+.+|+|++|+|-+. ||||+.|++|++||+++... ....+.+|...|.+|.|+|..
T Consensus 254 iwD~R~~~~~~~~-~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 254 IWDTRSNTSKPSH-SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNE 329 (422)
T ss_pred EEEcCCCCCCCcc-cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCCC
Confidence 999995 33333 3458999999999999764 78999999999999987543 456778899999999999965
Q ss_pred CEEEEEcCCCcEEEEeccCCC----------CcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeC
Q 044557 243 SVLYSGACDRSIIVWEKEEDD----------GNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRG 303 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~ 303 (362)
..|+++|.|+.+.+||+..-. +...++-...||+..|..+.|.+. .++|+++|+.+.||+.
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 578899999999999975311 122234456799999999999875 8999999999999985
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=2.3e-25 Score=179.27 Aligned_cols=279 Identities=20% Similarity=0.330 Sum_probs=205.8
Q ss_pred cccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcE
Q 044557 15 LKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKI 90 (362)
Q Consensus 15 l~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i 90 (362)
|.||..+++.|.+ .|++|+||+.|.++.||=.-. ++...++ ..|.+.|.++.+.. ..+++++.|.++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n--GerlGty-------~GHtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN--GERLGTY-------DGHTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecC--Cceeeee-------cCCCceEEEEEecCCcceeeecccccee
Confidence 7899999999999 499999999999999995422 2233233 24678899887754 469999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC-----Cc
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD-----RT 165 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----~~ 165 (362)
++||+.++.. ++.. ....+|..+.|+++|++++.+.++ +.
T Consensus 77 kLWDv~tGk~-------la~~----------------------------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 77 KLWDVETGKQ-------LATW----------------------------KTNSPVKRVDFSFGGNLILASTDKQMGYTCF 121 (327)
T ss_pred EEEEcCCCcE-------EEEe----------------------------ecCCeeEEEeeccCCcEEEEEehhhcCcceE
Confidence 9999987652 1111 123467889999999988777655 57
Q ss_pred EEEEECCC-------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 166 IKIWRTSD-------FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 166 i~iwd~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
|.++|++. .++...+. .+.+.++.+-|.|-++ +++|..||.|.+||..++. .++...+.|...|+.+.
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q 197 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQ 197 (327)
T ss_pred EEEEEccCChhhhcccCceEEec-CCccceeeeeecccCCEEEEecCCCcEEEEEcccCc---eeeechhhhcccccccc
Confidence 99999873 33444454 4668899999999887 8899999999999998874 34445567899999999
Q ss_pred EecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeE-EEeeCCCc-E------------EEe
Q 044557 238 LSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLV-CSGSADKT-I------------RIW 301 (362)
Q Consensus 238 ~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~-~s~s~D~~-i------------~~W 301 (362)
++||..+++++|.|.+-++||..+-+ .+.++.. ..+|.+.+++| +++ +-|+.+.. | |+|
T Consensus 198 ~s~d~T~FiT~s~Dttakl~D~~tl~----v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy 272 (327)
T KOG0643|consen 198 FSRDRTYFITGSKDTTAKLVDVRTLE----VLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY 272 (327)
T ss_pred ccCCcceEEecccCccceeeecccee----eEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence 99999999999999999999987532 3334332 35677777765 344 34443321 1 111
Q ss_pred eCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 302 RGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 302 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.. -.+.+...+||=++|+++||+|+++. -+||+.||.||+--.+
T Consensus 273 h~i--~eEEigrvkGHFGPINsvAfhPdGks---------YsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 273 HLI--FEEEIGRVKGHFGPINSVAFHPDGKS---------YSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHH--HHHHhccccccccCcceeEECCCCcc---------cccCCCCceEEEEEec
Confidence 100 01224567899999999999998753 6899999999997553
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=3.6e-25 Score=192.72 Aligned_cols=238 Identities=33% Similarity=0.539 Sum_probs=190.5
Q ss_pred eecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC
Q 044557 66 VGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD 143 (362)
Q Consensus 66 ~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 143 (362)
.|...+.++.+.+ +.+++++.||.+++|++..... ......|..
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~----------------------------------~~~~~~~~~ 52 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL----------------------------------LRTLKGHTG 52 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc----------------------------------EEEEecCCc
Confidence 4567888888876 4688999999999999865431 011234667
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCccee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.+..+.|+|++++|++++.|+.|++|++.+.+.+..+. .|...+.++.|++++.++ +++.||.|++||+.+...
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 127 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC---- 127 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE----
Confidence 78899999999999999999999999999877666665 678899999999998755 555599999999975542
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRI 300 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~ 300 (362)
...+..|...|.++.|+|++.++++++.|+.|++||+...+ ....+..|...+.++.+.++ .+++++.|+.|++
T Consensus 128 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK----CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc----cceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence 23344688899999999999999999889999999997543 23345578888999999876 7888999999999
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|+... ...+..+.+|...|.+++++++ +.++++++.|+.|++|++.
T Consensus 204 ~d~~~--~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 204 WDLST--GKCLGTLRGHENGVNSVAFSPD---------GYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred EECCC--CceecchhhcCCceEEEEEcCC---------CcEEEEEcCCCcEEEEEcC
Confidence 99643 4557778789999999999765 3578888889999999986
No 74
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.7e-27 Score=195.36 Aligned_cols=295 Identities=22% Similarity=0.335 Sum_probs=217.9
Q ss_pred ccceeeecc-cCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 8 DHHCLTTLK-GHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 8 ~~~~~~tl~-gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
+.++.++++ |...-+.|..| +|+||+|||-||.|.+||..++...+.-.+....+ .-....+|.|+.++.| .++
T Consensus 201 Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~-fMMmd~aVlci~FSRDsEMlA 279 (508)
T KOG0275|consen 201 PTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN-FMMMDDAVLCISFSRDSEMLA 279 (508)
T ss_pred hHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcc-eeecccceEEEeecccHHHhh
Confidence 334445544 34455666666 58999999999999999987643222111111111 2234678999999876 499
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+|+.||.|++|.+.++.... ++ . ..|...|+|+.|+.|+..+.+++.
T Consensus 280 sGsqDGkIKvWri~tG~ClR----rF-------------------------d----rAHtkGvt~l~FSrD~SqiLS~sf 326 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLR----RF-------------------------D----RAHTKGVTCLSFSRDNSQILSASF 326 (508)
T ss_pred ccCcCCcEEEEEEecchHHH----Hh-------------------------h----hhhccCeeEEEEccCcchhhcccc
Confidence 99999999999998764210 00 0 148889999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC- 240 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~- 240 (362)
|.++||.-+.+++++..+. +|+..|+.+.|.++|. +++++.||+|++|+..+.++..++.. .+...+|+++-.-|
T Consensus 327 D~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~--~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 327 DQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP--LGTDYPVNSVILLPK 403 (508)
T ss_pred cceEEEeccccchhHHHhc-CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC--CCCcccceeEEEcCC
Confidence 9999999999999999885 8999999999999996 99999999999999888766544322 23456788877666
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC---c-cceeEEE-EEeCCeEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG---H-TKSILCM-AVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---h-~~~v~~~-~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
+..+++.+...++|++-++.. +++..+.. . ...|.|+ ..-++.+...++|+.++.+.... +++-.++.
T Consensus 404 npeh~iVCNrsntv~imn~qG-----QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s--G~LE~tl~ 476 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNMQG-----QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS--GKLERTLP 476 (508)
T ss_pred CCceEEEEcCCCeEEEEeccc-----eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec--Cceeeeee
Confidence 567899999999999998753 12333321 1 2334332 33456899999999999987543 45566788
Q ss_pred CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 316 GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 316 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
-|...|..++-+|. ..+|||=|.||.+++|.
T Consensus 477 VhEkdvIGl~HHPH---------qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 477 VHEKDVIGLTHHPH---------QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccccCcc---------cchhhhhcccchhhhcC
Confidence 89888888876553 45799999999999995
No 75
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.9e-25 Score=206.57 Aligned_cols=202 Identities=18% Similarity=0.306 Sum_probs=150.0
Q ss_pred EeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCce-------EEEeeeccCcccEEEEEEcCCC--cEEEEeCCCe
Q 044557 138 WVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFK-------CLESITNAHDDAINAVALSDDG--DVYTGSADKK 207 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~ 207 (362)
+.+|.+.|.+++|+| ++++|++|+.|++|++||+.+.. .+..+ .+|...|.+++|+|++ .+++++.|++
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 457999999999999 88999999999999999997642 34444 4799999999999975 3889999999
Q ss_pred EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee-EEEEEeC
Q 044557 208 IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI-LCMAVVS 286 (362)
Q Consensus 208 i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v-~~~~~~~ 286 (362)
|+|||+.++.. ...+..|...|.+++|+|+|.+|++++.|++|++||.+++. .+..+.+|.+.. ..+.|.+
T Consensus 150 VrIWDl~tg~~----~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~----~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 150 VNVWDVERGKA----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT----IVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred EEEEECCCCeE----EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc----EEEEEecCCCCcceEEEEcC
Confidence 99999987643 33456789999999999999999999999999999998643 244566776543 3344543
Q ss_pred --CeEEEe----eCCCcEEEeeCCCCceeeeeEecCCC-CcEEEEEeeecCCccCCCCCceEEEecC-CCCcEEEEeccc
Q 044557 287 --DLVCSG----SADKTIRIWRGIDRNYTCLAVLEGHR-GPVKCLAAAIDNDRCDSSDTSYLVCSGS-LDCDIKVWQISF 358 (362)
Q Consensus 287 --~~~~s~----s~D~~i~~W~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~s-~D~~i~~W~~~~ 358 (362)
+.++++ +.|+.|++||.... ..++.....+. ..+....|+++ +.+|++|+ .|++||+||+..
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~-~~p~~~~~~d~~~~~~~~~~d~d---------~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKM-ASPYSTVDLDQSSALFIPFFDED---------TNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCC-CCceeEeccCCCCceEEEEEcCC---------CCEEEEEEeCCCeEEEEEeeC
Confidence 456554 35899999996432 22344443333 34444445433 23566665 699999999963
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=190.83 Aligned_cols=278 Identities=19% Similarity=0.279 Sum_probs=212.1
Q ss_pred cceeeeEecC--cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEec
Q 044557 20 SYVSSLALAG--KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKI 95 (362)
Q Consensus 20 ~~V~~l~~~~--~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~ 95 (362)
..+.++...+ ..++||+.|.++-++|..... ....+. .|...+..+.+.+ +.+++++.|..|++|..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q--~l~~~~-------Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ--ILATLK-------GHTKKITSVKFHKDLDTVITASADEIIRVWSV 290 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhh--hhhhcc-------CcceEEEEEEeccchhheeecCCcceEEeecc
Confidence 4567777643 789999999999999976432 122222 2334455555554 34889999999999987
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK 175 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 175 (362)
...... .....|.++|+.+..+|.|.||++++.|++..+.|++++.
T Consensus 291 ~~~s~~----------------------------------~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~ 336 (506)
T KOG0289|consen 291 PLSSEP----------------------------------TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS 336 (506)
T ss_pred ccccCc----------------------------------cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc
Confidence 543210 0112588999999999999999999999999999999999
Q ss_pred EEEeeecc-CcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc
Q 044557 176 CLESITNA-HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 176 ~~~~~~~~-h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~ 253 (362)
++...... ..-.+++.+|+|||. |.+|..||.|+|||+.++.. ...+.+|.++|.+|+|+.+|.+|++++.|+.
T Consensus 337 ~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~----~a~Fpght~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 337 QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN----VAKFPGHTGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc----cccCCCCCCceeEEEeccCceEEEEEecCCe
Confidence 88766532 223589999999998 66899999999999987653 3456789999999999999999999999999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEE--eCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCC
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~ 331 (362)
|++||++..... ..+ .+. ....+.++.| ++.+++.++.|=.|.+++-....+.++..+.-|++..+++.|.
T Consensus 413 V~lwDLRKl~n~-kt~-~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg---- 485 (506)
T KOG0289|consen 413 VKLWDLRKLKNF-KTI-QLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG---- 485 (506)
T ss_pred EEEEEehhhccc-cee-ecc-ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----
Confidence 999999875422 111 122 2235666666 4568999998877777765566788899999999999998884
Q ss_pred ccCCCCCceEEEecCCCCcEEEEec
Q 044557 332 RCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 332 ~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
....+++++|.|..+|++.+
T Consensus 486 -----~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 486 -----EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred -----ccceEEeeccchhheEEeec
Confidence 34478999999999998764
No 77
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=7.3e-25 Score=203.78 Aligned_cols=255 Identities=13% Similarity=0.198 Sum_probs=176.9
Q ss_pred EecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeEEEecCCcEEEEecCCCCCCcccceeeee
Q 044557 34 TGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLAT 110 (362)
Q Consensus 34 t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~ 110 (362)
.|+.++.|++|+..... ....+..|.+.|.++.+.+ +.|++++.|++|++|++......... .
T Consensus 49 gGG~~gvI~L~~~~r~~---------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---i-- 114 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKP---------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---I-- 114 (568)
T ss_pred CCCceeEEEeeecCCCc---------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---c--
Confidence 36678899999864321 1122345677899999875 36999999999999998643210000 0
Q ss_pred ccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCE-EEEEECCCcEEEEECCCceEEEeeeccCcccEE
Q 044557 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL-LYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN 189 (362)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~ 189 (362)
......+.+|...|.+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.
T Consensus 115 ---------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~ 171 (568)
T PTZ00420 115 ---------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLS 171 (568)
T ss_pred ---------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEE
Confidence 0011233568899999999999875 5789999999999999988766553 557899
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE-----EEecCCCEEEEEcCCC----cEEEEec
Q 044557 190 AVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL-----ALSCDGSVLYSGACDR----SIIVWEK 259 (362)
Q Consensus 190 ~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i-----~~s~~~~~l~s~~~d~----~i~~wd~ 259 (362)
+++|+|+|. +++++.|+.|+|||+.++.. ...+.+|.+.+... .|++++.+|+++|.|+ +|++||+
T Consensus 172 SlswspdG~lLat~s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl 247 (568)
T PTZ00420 172 SLKWNIKGNLLSGTCVGKHMHIIDPRKQEI----ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL 247 (568)
T ss_pred EEEECCCCCEEEEEecCCEEEEEECCCCcE----EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence 999999998 66678899999999987653 23455677654432 3458999999988775 7999999
Q ss_pred cCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCC
Q 044557 260 EEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~ 331 (362)
+....... ...+..+...+...... +.++++|+.|++||+|+........+..+. +..++.+++|.|...
T Consensus 248 r~~~~pl~-~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 248 KNTTSALV-TMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred CCCCCceE-EEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence 85433322 22333444433222222 347899999999999997544333333333 677889999998753
No 78
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4.2e-25 Score=204.29 Aligned_cols=269 Identities=18% Similarity=0.237 Sum_probs=186.2
Q ss_pred eEecCcEEEEecCCCeEEEeecCCCCccccee----eeccceeEEeecceeEEEEEcC---ceeEEEecCCcEEEEecCC
Q 044557 25 LALAGKFLYTGSSDNEVRSWDCNTFSSELDQE----FLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIRVWKINN 97 (362)
Q Consensus 25 l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~----~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~ 97 (362)
.++++..+++++.+..+..|+.......+... .......+..|.+.|.++.+.+ +.|++++.|++|++|++..
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 34556778889999999999865432111100 0111234566788999999875 3699999999999999865
Q ss_pred CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEECCCceE
Q 044557 98 QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWRTSDFKC 176 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~ 176 (362)
....... ......+.+|...|.+++|+|++ ++|++|+.|++|+|||+++++.
T Consensus 108 ~~~~~~~---------------------------~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~ 160 (493)
T PTZ00421 108 EGLTQNI---------------------------SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA 160 (493)
T ss_pred Ccccccc---------------------------CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE
Confidence 3210000 00112345788999999999985 6999999999999999999888
Q ss_pred EEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc-eeEEEEecCCCEEEEEc----C
Q 044557 177 LESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG-INALALSCDGSVLYSGA----C 250 (362)
Q Consensus 177 ~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~-v~~i~~s~~~~~l~s~~----~ 250 (362)
+..+. .|...|.+++|+|+|. +++++.||+|++||+.++... ..+..|... +..+.|.+++..+++++ .
T Consensus 161 ~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v----~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 161 VEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV----SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred EEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE----EEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 77664 7889999999999997 789999999999999876532 234556654 34677888888887665 4
Q ss_pred CCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEe--CCeEEEee-CCCcEEEeeCCCCceeeeeEec-CCCCcEEEEE
Q 044557 251 DRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVV--SDLVCSGS-ADKTIRIWRGIDRNYTCLAVLE-GHRGPVKCLA 325 (362)
Q Consensus 251 d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~--~~~~~s~s-~D~~i~~W~~~~~~~~~~~~l~-~h~~~v~~~~ 325 (362)
|++|++||++....... ....+. ..+....|+ +.++++++ .|+.|++|++.... ++..+. .+..++.+++
T Consensus 236 Dr~VklWDlr~~~~p~~---~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~--~~~~~~~~s~~~~~g~~ 310 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYS---TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER--LTFCSSYSSVEPHKGLC 310 (493)
T ss_pred CCeEEEEeCCCCCCcee---EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc--eEEEeeccCCCCCcceE
Confidence 78999999986443322 122222 233334454 34677766 69999999975433 333332 3566788888
Q ss_pred eeecC
Q 044557 326 AAIDN 330 (362)
Q Consensus 326 ~~~~~ 330 (362)
|.|..
T Consensus 311 ~~pk~ 315 (493)
T PTZ00421 311 MMPKW 315 (493)
T ss_pred ecccc
Confidence 88864
No 79
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=8.4e-26 Score=212.67 Aligned_cols=311 Identities=20% Similarity=0.298 Sum_probs=219.2
Q ss_pred ecccC-ccceeeeEe--cCcEEEEec--CCCeEEEeecCCCCcc---cceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 14 TLKGH-NSYVSSLAL--AGKFLYTGS--SDNEVRSWDCNTFSSE---LDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 14 tl~gH-~~~V~~l~~--~~~~l~t~s--~Dg~i~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
++-+| ...|.+|+. ++..++||+ .|+.+++|+.+.-..+ ...........+..|.+.|.|+.+++| +|++
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 44555 456788888 478999999 9999999997643211 111122233445667889999988776 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeee-eeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRH-KTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
|+.|+.|.+|+..... ... .+....+...+.+. ....+.+|...|..++|+|++.+||++|-
T Consensus 87 GSDD~~v~iW~~~~~~-~~~----------------~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIG-SGT----------------VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL 149 (942)
T ss_pred ccCcceEEEeeecccC-Ccc----------------cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc
Confidence 9999999999876311 000 00011111111122 22345679999999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc--cccceeEEEEe
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER--HNSGINALALS 239 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--h~~~v~~i~~s 239 (362)
|++|.|||..+++++..+. +|...|..+.|.|-|+ |++-+.|++|++|...+....+.+..-++. -..-+..+.||
T Consensus 150 DnsViiwn~~tF~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred cceEEEEccccceeeeeee-cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 9999999999998777664 8999999999999998 778899999999997664333332222211 12346789999
Q ss_pred cCCCEEEEEcC----CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-------C------------eEEEeeCCC
Q 044557 240 CDGSVLYSGAC----DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-------D------------LVCSGSADK 296 (362)
Q Consensus 240 ~~~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~------------~~~s~s~D~ 296 (362)
|||++|++.-. -.++.+.+.. .+..-..+-||.+++.++.|.+ . .+|+||.|+
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~----tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERG----TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecC----CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 99999998743 2345666543 2333456779999999999863 1 578999999
Q ss_pred cEEEeeCCC-CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 297 TIRIWRGID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 297 ~i~~W~~~~-~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+|-||.... +....++.+. ...|.+++|+|++ ..|..+|.||+|.+..++
T Consensus 305 SlSVW~T~~~RPl~vi~~lf--~~SI~DmsWspdG---------~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 305 SLSVWNTALPRPLFVIHNLF--NKSIVDMSWSPDG---------FSLFACSLDGTVALIHFE 355 (942)
T ss_pred cEEEEecCCCCchhhhhhhh--cCceeeeeEcCCC---------CeEEEEecCCeEEEEEcc
Confidence 999997422 2223333443 4469999998775 458899999999998764
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.9e-27 Score=209.00 Aligned_cols=238 Identities=27% Similarity=0.456 Sum_probs=188.7
Q ss_pred ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 79 DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 79 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
++|++|+.||.|++|++.......+ .+ ....+..|.+.|..+....+++.|+
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s-------~~---------------------~~asme~HsDWVNDiiL~~~~~tlI 89 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPS-------TP---------------------YIASMEHHSDWVNDIILCGNGKTLI 89 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcc-------cc---------------------hhhhhhhhHhHHhhHHhhcCCCceE
Confidence 4599999999999999864321100 00 0112357999999999999999999
Q ss_pred EEECCCcEEEEECCCc--eEEEeeeccCcccEEEEEE-cCCCc-EEEEeCCCeEEEEeCCCCCC-------cceeehhhh
Q 044557 159 SVSWDRTIKIWRTSDF--KCLESITNAHDDAINAVAL-SDDGD-VYTGSADKKIKVWRRSPGNK-------KHSLVDVLE 227 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~--~~~~~~~~~h~~~v~~v~~-~~~~~-~~s~~~dg~i~iw~~~~~~~-------~~~~~~~~~ 227 (362)
++|.|-+|++|+.... -|+.++ ..|.+.|.|+++ .++.. +++|+-|+.|.+||+.++.. ..+......
T Consensus 90 S~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 90 SASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred EecCCceEEEeecccCcchhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 9999999999998876 355555 479999999999 56555 78999999999999987621 111111122
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~ 305 (362)
++..+|.+++..+.|..+++||..+.+++||-++... +..+.||+..|.++-.+.+ .++|+|.||+||+|++.
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k----imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg- 243 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK----IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG- 243 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccc----eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc-
Confidence 6788999999999999999999999999999887543 3356799999999988654 89999999999999964
Q ss_pred CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 306 ~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
...|++++..|++.||+++.+|+- ..+.+|+.||.|..=|+..|.
T Consensus 244 -qQrCl~T~~vH~e~VWaL~~~~sf---------~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 244 -QQRCLATYIVHKEGVWALQSSPSF---------THVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred -ccceeeeEEeccCceEEEeeCCCc---------ceEEecCCCCcEEecccCCch
Confidence 457899999999999999887654 358999999999988887653
No 81
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4e-26 Score=193.77 Aligned_cols=243 Identities=23% Similarity=0.383 Sum_probs=185.9
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
.++.+||.||..+|..|.|+ .+|+++|+.|..+++||+.++. ....+... +...+.+.++.+| ++++|
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd--~~~~y~~~------~~~S~~sc~W~pDg~~~V~G 330 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD--LRHLYPSG------LGFSVSSCAWCPDGFRFVTG 330 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch--hhhhcccC------cCCCcceeEEccCCceeEec
Confidence 45789999999999999996 6799999999999999988754 22222211 1235666777766 49999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|+++..|+++...... +.. -....|.+++.++||+++++.+.|.
T Consensus 331 s~dr~i~~wdlDgn~~~~-------------------W~g---------------vr~~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 331 SPDRTIIMWDLDGNILGN-------------------WEG---------------VRDPKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred CCCCcEEEecCCcchhhc-------------------ccc---------------cccceeEEEEEcCCCcEEEEEeccc
Confidence 999999999987543110 000 0113478999999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCcceeehhhhccccceeE--EEEec-
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA--LALSC- 240 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~--i~~s~- 240 (362)
.|++++.++......+. ..++|++.+++.+++++ +--.+.+|.+||++.. .++....+|...-.- -+|..
T Consensus 377 ~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~----~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN----KLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred ceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh----hHHHHhhcccccceEEEeccCCC
Confidence 99999988776554333 45689999999999854 5668999999999843 344455667654332 24443
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRG 303 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~ 303 (362)
+..++++||.|+.|++|+..++. .+..+.||...|.|++++| .++||+|.||+||||..
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgk----ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGK----LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CcceEEecCCCceEEEEEccCCc----eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 55899999999999999988644 5678999999999999975 49999999999999974
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.3e-25 Score=177.85 Aligned_cols=263 Identities=17% Similarity=0.228 Sum_probs=193.8
Q ss_pred eecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE---cCceeEEEecC
Q 044557 13 TTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV---LADKLFSAHQD 87 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~---~~~~l~s~~~d 87 (362)
+.+++|.+.|.+|+| +|..+++|+.|+++++|+++.......... ..|.+.|..+.+ .++.+++++.|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~-------~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVY-------RGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcc-------cCCCcchhhheeCCCCCcceEEecCC
Confidence 568899999999999 499999999999999999876421111111 122333433433 35779999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
.+|++||++...+... . .....-.-+.|+|+|.+++.++.|..|.
T Consensus 87 k~ir~wd~r~~k~~~~-------i----------------------------~~~~eni~i~wsp~g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTAR-------I----------------------------ETKGENINITWSPDGEYIAVGNKDDRIT 131 (313)
T ss_pred ceEEEEEeccCcEEEE-------e----------------------------eccCcceEEEEcCCCCEEEEecCcccEE
Confidence 9999999986653211 0 0112224577999999999999999999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY 246 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 246 (362)
..|.++.+.+.... ....+.-++|+-++. ++.....|.|.|-....-+ ....++.|+....||.|+|+|+++|
T Consensus 132 ~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk----pv~si~AH~snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK----PVQSIKAHPSNCICIEFDPDGRYFA 205 (313)
T ss_pred EEEecccceeehhc--ccceeeeeeecCCCCEEEEecCCceEEEEeccccc----cccccccCCcceEEEEECCCCceEe
Confidence 99999988776553 344677788876665 5566667999998765443 3445678999999999999999999
Q ss_pred EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEE
Q 044557 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~ 324 (362)
+|+.|..+.+||+++-- -+..+.-+.-+|+.++|+ +.+||++|+|..|-|=... ++..+..+. |.++-..+
T Consensus 206 ~GsADAlvSLWD~~ELi----C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve--tGd~~~eI~-~~~~t~tV 278 (313)
T KOG1407|consen 206 TGSADALVSLWDVDELI----CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE--TGDRVWEIP-CEGPTFTV 278 (313)
T ss_pred eccccceeeccChhHhh----hheeeccccCceEEEEeccCcceeeccCccceEEeEecc--cCCeEEEee-ccCCceeE
Confidence 99999999999987532 233445566678888876 5699999999999887643 344455553 78888899
Q ss_pred EeeecC
Q 044557 325 AAAIDN 330 (362)
Q Consensus 325 ~~~~~~ 330 (362)
||+|..
T Consensus 279 AWHPk~ 284 (313)
T KOG1407|consen 279 AWHPKR 284 (313)
T ss_pred EecCCC
Confidence 998764
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=7.4e-26 Score=185.76 Aligned_cols=296 Identities=20% Similarity=0.303 Sum_probs=203.1
Q ss_pred eecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCc-cccee-----eecc---ceeEEeecceeEEEEEcCc--
Q 044557 13 TTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSS-ELDQE-----FLSN---NNIVAVGKGAVKSLVVLAD-- 79 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~-~~~~~-----~~~~---~~~~~~~~~~v~~i~~~~~-- 79 (362)
..+..|.+++++-+|+ |.++||||.|-.|||.|++..-. +...+ .... .+.+..|...|..+.+-+.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 3467899999999994 88999999999999999873110 01100 0011 1122335567888887764
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS 159 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 159 (362)
.|++++.|++|+++|...... .+.... .....+|++++|+|.|.+|+.
T Consensus 186 ILiS~srD~tvKlFDfsK~sa---------------KrA~K~-----------------~qd~~~vrsiSfHPsGefllv 233 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSA---------------KRAFKV-----------------FQDTEPVRSISFHPSGEFLLV 233 (430)
T ss_pred eEEeccCCCeEEEEecccHHH---------------HHHHHH-----------------hhccceeeeEeecCCCceEEE
Confidence 489999999999999853210 000000 123467999999999999999
Q ss_pred EECCCcEEEEECCCceEEEe--eeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccc-cceeE
Q 044557 160 VSWDRTIKIWRTSDFKCLES--ITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN-SGINA 235 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~--~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~-~~v~~ 235 (362)
|.+-..+++||+++.+|.-. -...|++.|++|.+++.+. +++++.||.||+||--+..+..++ -..|. ..|.+
T Consensus 234 gTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~---~~AH~gsevcS 310 (430)
T KOG0640|consen 234 GTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI---GNAHGGSEVCS 310 (430)
T ss_pred ecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHH---HhhcCCceeee
Confidence 99999999999999988643 2356999999999999998 679999999999986655433222 12354 47899
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee---EEEEEe--CCeEEEee-CCCcEEEeeCCCCcee
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI---LCMAVV--SDLVCSGS-ADKTIRIWRGIDRNYT 309 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v---~~~~~~--~~~~~s~s-~D~~i~~W~~~~~~~~ 309 (362)
..|..+|++|++.|.|..+++|.+.+++.-....+ .|-++.. +.-.|. .++++.-. ..+.+.-||... ..
T Consensus 311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG--Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt--ad 386 (430)
T KOG0640|consen 311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG--AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART--AD 386 (430)
T ss_pred EEEccCCeEEeecCCcceeeeeeecCCceEEEEec--CCcccchhhhhhhhhcCccceEEccccccCceeeccccc--hh
Confidence 99999999999999999999999987653221111 1111111 111122 23444322 235577898532 22
Q ss_pred eeeE-ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 310 CLAV-LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 310 ~~~~-l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+.. -.||.+++..+.-+|.+. -++++|.|-.+|+|--
T Consensus 387 r~~l~slgHn~a~R~i~HSP~~p---------~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 387 RVALLSLGHNGAVRWIVHSPVEP---------AFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhcccCCCCCceEEEeCCCCC---------ceeeecccceeeeeee
Confidence 2222 248999999987776542 3779999999999964
No 84
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.9e-25 Score=197.71 Aligned_cols=323 Identities=18% Similarity=0.250 Sum_probs=226.4
Q ss_pred cceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--
Q 044557 4 LSVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-- 79 (362)
Q Consensus 4 ~~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (362)
|+-++-.|...++||++.|.+|+.+ |.+|++||.||+||||.+.++-+..... ..+.|.++++++.
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----------~d~~I~~vaw~P~~~ 454 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----------FDSEIRSVAWNPLSD 454 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----------ecceeEEEEecCCCC
Confidence 4556667888899999999999984 8899999999999999988754332222 1357888888754
Q ss_pred -eeEEEecCCcEEEEecCCCCCCcc--cceeeeeccCC--CchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC
Q 044557 80 -KLFSAHQDHKIRVWKINNQEPDHQ--KYTRLATLPTL--GDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE 154 (362)
Q Consensus 80 -~l~s~~~dg~i~~w~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 154 (362)
.++.++.+..+.+-+..-+..... ....+...|.. .+.....+......+... ..+..+.|...|..+.|+..|
T Consensus 455 ~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~-~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 455 LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEK-GVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred ceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhcc-ceEEEEecCCccceeeeecCC
Confidence 255555556666665433211110 00111111110 011111121111111111 245667899999999999999
Q ss_pred CEEEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcccc
Q 044557 155 TLLYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS 231 (362)
Q Consensus 155 ~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~ 231 (362)
.||++...+ ..|.|+++...+....+.. -.+.|.++.|+|....+..++-..|+|||+..+ .+.+.+.....
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq----elvKkL~tg~k 608 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ----ELVKKLLTGSK 608 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCceEEEEeccceEEEehhHH----HHHHHHhcCCe
Confidence 999998654 5788999987765555543 345788999999887555555678999998754 34444445566
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC-----
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI----- 304 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~----- 304 (362)
.|..++++|.|..|+.|+.|+.+..||+.-.... ..+++-|...+++++|.+. +++|||.|+++.++-..
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskP---yk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP---YKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCcch---hHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence 7999999999999999999999999999765433 3456779999999999875 89999999999999521
Q ss_pred --CCceeeeeEecCCCCc----EEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 305 --DRNYTCLAVLEGHRGP----VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 305 --~~~~~~~~~l~~h~~~----v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
+.-..+++.|.||... |..+.|+| ...+|.|++.||+||+|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP---------~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHP---------RQPWLFSAGADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccC---------CCceEEecCCCceEEee
Confidence 2335678899999876 76666655 44678899999999999
No 85
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.1e-25 Score=180.91 Aligned_cols=293 Identities=21% Similarity=0.346 Sum_probs=202.3
Q ss_pred ccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeec-cceeE-----EeecceeEEEEEcC---ceeEE
Q 044557 16 KGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLS-NNNIV-----AVGKGAVKSLVVLA---DKLFS 83 (362)
Q Consensus 16 ~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~-~~~~~-----~~~~~~v~~i~~~~---~~l~s 83 (362)
+.|.+.|.+|.++ |+|+++|+.||.|-+||++.........+.. ..+++ ..|+-.|..+.+.+ ..+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4699999999984 8999999999999999997643111111110 11111 12334566665554 23667
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC---CEEEEE
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE---TLLYSV 160 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~ 160 (362)
++.|.++++||.++..... .....+.|.+-+++|-. .++|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~-----------------------------------~F~me~~VYshamSp~a~sHcLiA~g 164 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAV-----------------------------------DFKMEGKVYSHAMSPMAMSHCLIAAG 164 (397)
T ss_pred ccccceEEEeecccceeeE-----------------------------------EeecCceeehhhcChhhhcceEEEEe
Confidence 8899999999987533100 01123344455555543 368888
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCC-----------Ccceeehhhh
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGN-----------KKHSLVDVLE 227 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~-----------~~~~~~~~~~ 227 (362)
..|-.|++-|+.++.+-+.+. +|.+.|.+|.|+|... |++|+.||.||+||+.... +.....+...
T Consensus 165 tr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ 243 (397)
T KOG4283|consen 165 TRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNT 243 (397)
T ss_pred cCCCcEEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccc
Confidence 899999999999999988875 8999999999999886 7899999999999986431 1111223455
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee-EE--E-EEeCCeEEEeeCCCcEEEeeC
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI-LC--M-AVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v-~~--~-~~~~~~~~s~s~D~~i~~W~~ 303 (362)
.|.+.|+.++|+.|+.++++.+.|..+++|+.++++..+...+.. .|.+.+ .. + ....+.++---.|+++.++.+
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~-~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~ 322 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI-IHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNL 322 (397)
T ss_pred cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc-cccccccceEEEeecccceEEEEecCCeEEEEEc
Confidence 688999999999999999999999999999998766543322211 122211 00 1 112233444444577888875
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.. +..+..+.+|-..|.+.++.|+-++ ..+|+.|+.|..|-.
T Consensus 323 ~s--gs~ir~l~~h~k~i~c~~~~~~fq~---------~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 323 LE--GSFVRRLSTHLKRINCAAYRPDFEQ---------CFTGDMNGNIYMWSP 364 (397)
T ss_pred cC--ceEEEeeecccceeeEEeecCchhh---------hhccccCCccccccc
Confidence 43 4457778889889999988776543 668999999999965
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.4e-25 Score=192.75 Aligned_cols=242 Identities=16% Similarity=0.292 Sum_probs=184.6
Q ss_pred ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EE
Q 044557 79 DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LL 157 (362)
Q Consensus 79 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 157 (362)
+.+++.+..+.|.+||............ .. .....+.+|.+.=.+++|++... .|
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--~~----------------------~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASG--EC----------------------RPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccc--cC----------------------CCceEEEeecccccccccccccceeE
Confidence 3477778899999999865332111000 00 01123456777667788988654 69
Q ss_pred EEEECCCcEEEEECCCceE------EEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhcc
Q 044557 158 YSVSWDRTIKIWRTSDFKC------LESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERH 229 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~------~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h 229 (362)
++++.|+.|++||++.... ...+..+|++.|..++|++-.. |.+++.|+.+.|||.++. ..+.......|
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah 271 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAH 271 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCccccccc
Confidence 9999999999999875322 2345568999999999998654 789999999999999863 22344456789
Q ss_pred ccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCC
Q 044557 230 NSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 230 ~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~ 305 (362)
.++|++++|+| ++..||+||.|++|.+||+++-.. .+..+.+|...|.++.|+|. .++|++.|+.+.+||+..
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 99999999999 667889999999999999987544 45678999999999999875 799999999999999632
Q ss_pred C------------ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 306 R------------NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 306 ~------------~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
- ...++-+--||...|..+.|.|.. .+.|+|++.|+.+.||+++
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e--------PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE--------PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCC--------CeEEEEecCCceEEEeecc
Confidence 1 112233445999999999887754 3789999999999999987
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-25 Score=200.26 Aligned_cols=266 Identities=20% Similarity=0.343 Sum_probs=201.5
Q ss_pred ecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCccc
Q 044557 27 LAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 27 ~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~ 104 (362)
|+..-++..+....|.+|+..+..... ....+...++++.+.+ ..|+.|..+|.|.+||.......
T Consensus 185 Wss~n~laValg~~vylW~~~s~~v~~---------l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--- 252 (484)
T KOG0305|consen 185 WSSANVLAVALGQSVYLWSASSGSVTE---------LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--- 252 (484)
T ss_pred cccCCeEEEEecceEEEEecCCCceEE---------eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc---
Confidence 333334444466789999976533111 1112256788888874 46999999999999998654311
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEee-ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH-HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA 183 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 183 (362)
..+.+ |...|.+++|+ +..+.+|+.|+.|..+|++..+.......+
T Consensus 253 -------------------------------~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~ 299 (484)
T KOG0305|consen 253 -------------------------------RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQG 299 (484)
T ss_pred -------------------------------ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence 01123 88899999998 678999999999999999987655444568
Q ss_pred CcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-CCCEEEEEc--CCCcEEEEec
Q 044557 184 HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGA--CDRSIIVWEK 259 (362)
Q Consensus 184 h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~--~d~~i~~wd~ 259 (362)
|.+.|..++|++++. +++|+.|+.+.|||.....+.. .+..|.+.|.+++|+| ....||+|+ .|+.|++||.
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~----~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF----TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCccccE----EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 999999999999997 8999999999999985544333 3457999999999999 677888876 6999999998
Q ss_pred cCCCCcEEEEEeecCccceeEEEEEeCCe--EEE--eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCC
Q 044557 260 EEDDGNILVVGALRGHTKSILCMAVVSDL--VCS--GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDS 335 (362)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~s--~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~ 335 (362)
..+. .+.... -...|..+.|++.. +++ |-.+..|.||++. ..+.+..+.||...|..++++|++.
T Consensus 376 ~~g~----~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p--s~~~~~~l~gH~~RVl~la~SPdg~---- 444 (484)
T KOG0305|consen 376 NTGA----RIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP--SMKLVAELLGHTSRVLYLALSPDGE---- 444 (484)
T ss_pred CCCc----Eecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc--ccceeeeecCCcceeEEEEECCCCC----
Confidence 7543 222222 35678999998652 443 4467889999964 4677889999999999999988754
Q ss_pred CCCceEEEecCCCCcEEEEecc
Q 044557 336 SDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 336 ~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.|++|+.|.++|+|++.
T Consensus 445 -----~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 445 -----TIVTGAADETLRFWNLF 461 (484)
T ss_pred -----EEEEecccCcEEecccc
Confidence 59999999999999994
No 88
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-25 Score=180.38 Aligned_cols=254 Identities=20% Similarity=0.202 Sum_probs=180.7
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSA 84 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~ 84 (362)
|...+.|+.||++.|+++..+ +++++||+.|.++|+||++++....... ...+|..+.++.+ .++..
T Consensus 41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k----------~~~~Vk~~~F~~~gn~~l~ 110 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK----------TNSPVKRVDFSFGGNLILA 110 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee----------cCCeeEEEeeccCCcEEEE
Confidence 777899999999999999984 8899999999999999998754221111 1235566665532 23333
Q ss_pred ------ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 85 ------HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 85 ------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
+.-+.|.++|++............ ..+..+...++.+-|.|-+++|+
T Consensus 111 ~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~---------------------------~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 111 STDKQMGYTCFVSVFDIRDDSSDIDSEEPY---------------------------LKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred EehhhcCcceEEEEEEccCChhhhcccCce---------------------------EEecCCccceeeeeecccCCEEE
Confidence 234678888886433110000001 11122446788899999999999
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
+|.+||.|.+||.++++.+......|+..|+.++++++.. +++++.|.+-++||..+-....+. ....||++.+
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty-----~te~PvN~aa 238 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY-----TTERPVNTAA 238 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe-----eeccccccee
Confidence 9999999999999998766555567999999999999997 889999999999999876543332 2356899999
Q ss_pred EecCCCEEEEEcCCCcEEEEeccCCCCcE----------EEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 238 LSCDGSVLYSGACDRSIIVWEKEEDDGNI----------LVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 238 ~s~~~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
++|...+++.||.-...-+=-.....++. ..++.++||-++|.+++++|+ ..+||++||.||+.-.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 99977777766543322121111101100 125567899999999999876 7999999999999864
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6e-25 Score=190.34 Aligned_cols=269 Identities=23% Similarity=0.358 Sum_probs=200.3
Q ss_pred ccceeeeEecC----cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEE
Q 044557 19 NSYVSSLALAG----KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRV 92 (362)
Q Consensus 19 ~~~V~~l~~~~----~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~ 92 (362)
..+|.+|+|++ +..+|+| -.+.+|+..+... ...+ +-.+..+.++.+-.| -++.|...|.|++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~--~k~~-------srFk~~v~s~~fR~DG~LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSV--RKTF-------SRFKDVVYSVDFRSDGRLLAAGDESGHVKV 94 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhh--hhhH-------HhhccceeEEEeecCCeEEEccCCcCcEEE
Confidence 46899999975 4555555 5677888654321 1111 112456777777544 3677788899999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEEC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~ 171 (362)
+|+.+.. ++ -.+..|+.++..+.|+|++ ..|++|+.|+.+++||+
T Consensus 95 fD~k~r~------------------iL----------------R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 95 FDMKSRV------------------IL----------------RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred eccccHH------------------HH----------------HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 9964310 00 0123688899999999866 57888999999999999
Q ss_pred CCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 172 SDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
.+......+ .+|++.|.+.+++|... ++||++||+||+||...... .+.. -.|..||..+.+-|.|..++++|
T Consensus 141 s~a~v~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~e-lnhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 141 STAYVQAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVE-LNHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred CCcEEEEEe-cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEE-ecCCCceeeEEEcCCCCEEEEcC
Confidence 988764344 58999999999998764 88999999999999886531 1112 25889999999999999999998
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
. +.|++||+..+.. .+..+..|.+.|+|+.+.. ..|+|||-|+.||+|+. .+++.+..+. -.++|.+++.+
T Consensus 216 G-n~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~--t~~Kvv~s~~-~~~pvLsiavs 288 (487)
T KOG0310|consen 216 G-NSVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT--TNYKVVHSWK-YPGPVLSIAVS 288 (487)
T ss_pred C-CeEEEEEecCCce---ehhhhhcccceEEEEEeecCCceEeecccccceEEEEc--cceEEEEeee-cccceeeEEec
Confidence 5 5799999986542 3444555999999999975 48999999999999994 3577777664 67899999998
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEE
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
|+++ .++.|..||.+-+
T Consensus 289 ~dd~---------t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 289 PDDQ---------TVVIGMSNGLVSI 305 (487)
T ss_pred CCCc---------eEEEecccceeee
Confidence 8643 4888888888654
No 90
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=7.6e-25 Score=197.52 Aligned_cols=310 Identities=18% Similarity=0.231 Sum_probs=200.9
Q ss_pred eeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc-------------CceeEEEecCC
Q 044557 24 SLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL-------------ADKLFSAHQDH 88 (362)
Q Consensus 24 ~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-------------~~~l~s~~~dg 88 (362)
++.|+ .+.|...=.|..+.|||+...... +.......|...|..+... +.-+.+++.|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kv------gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~ 402 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKV------GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDG 402 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccc------cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCC
Confidence 34454 456766778999999998653211 1111222344444433221 12378999999
Q ss_pred cEEEEecCCCCCCcccc------eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 89 KIRVWKINNQEPDHQKY------TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+||+|++..... .+.. ..+...+..++....+... ...+...-......-.-.+++++++|++++||+|..
T Consensus 403 TIRlW~l~~ctn-n~vyrRNils~~l~ki~y~d~~~q~~~d~--~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr 479 (1080)
T KOG1408|consen 403 TIRLWDLAFCTN-NQVYRRNILSANLSKIPYEDSTQQIMHDA--SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR 479 (1080)
T ss_pred cEEEeecccccc-cceeecccchhhhhcCccccCchhhhhhc--cCCcccccchhhcCcccceEEEEECCCcceecccCc
Confidence 999999975221 1111 0111111111110000000 000011111111122346899999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC---c-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee----
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG---D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN---- 234 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~---- 234 (362)
-|+++||++.+.+..-.+ .+|+..|.|+.|+... + |++++.|+-|.+||+.-. ..+..++.+|...|+
T Consensus 480 ~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---y~l~qtld~HSssITsvKF 555 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---YDLVQTLDGHSSSITSVKF 555 (1080)
T ss_pred cCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---cchhhhhcccccceeEEEE
Confidence 999999999887766555 4899999999998432 3 789999999999997532 223333444444444
Q ss_pred ---------------------------------------------EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEE
Q 044557 235 ---------------------------------------------ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVV 269 (362)
Q Consensus 235 ---------------------------------------------~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 269 (362)
.+++.|.-+++++++.|+.||+|++++++.. ...
T Consensus 556 a~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~F 634 (1080)
T KOG1408|consen 556 ACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSF 634 (1080)
T ss_pred eecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee-eee
Confidence 4455566788899999999999999875432 222
Q ss_pred EeecCccceeEEEEE--eCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 270 GALRGHTKSILCMAV--VSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 270 ~~~~~h~~~v~~~~~--~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
+.-.+|.+....+.. ++.++++...|+++.++|.. .++|++++.||++.|+.+.|.++=+ -|+|.|.
T Consensus 635 Kgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~--sgEcvA~m~GHsE~VTG~kF~nDCk---------HlISvsg 703 (1080)
T KOG1408|consen 635 KGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV--SGECVAQMTGHSEAVTGVKFLNDCK---------HLISVSG 703 (1080)
T ss_pred cccccCCCceEEEEECCCccEEEEeecCCceEEEEec--cchhhhhhcCcchheeeeeecccch---------hheeecC
Confidence 233346555555544 45599999999999999964 4689999999999999999987643 3789999
Q ss_pred CCcEEEEeccc
Q 044557 348 DCDIKVWQISF 358 (362)
Q Consensus 348 D~~i~~W~~~~ 358 (362)
||.|-||+++.
T Consensus 704 DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 DGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECch
Confidence 99999999864
No 91
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.5e-25 Score=180.48 Aligned_cols=303 Identities=21% Similarity=0.282 Sum_probs=191.5
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce---eEEEe
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK---LFSAH 85 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---l~s~~ 85 (362)
.+.+|+||.+.|++++|+ |++|||++.|++||+|++..... ....+. -..+.-+.-+.+.+.+|- ++++-
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-~eHr~~----R~nve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-KEHRCI----RQNVEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-hhhhHh----hccccCCCceEEEECCCcceEEEEEc
Confidence 456899999999999994 89999999999999999865321 000000 011122344566666653 56666
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
...++++|.+............ .+ +-... -...|+-.+..+....+++++++++.|..
T Consensus 153 ~g~~l~vyk~~K~~dG~~~~~~---v~-----------------~D~~~--f~~kh~v~~i~iGiA~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTDGSGSHHF---VH-----------------IDNLE--FERKHQVDIINIGIAGNAKYIMSASLDTK 210 (420)
T ss_pred cCCEEEEEEeeecccCCCCccc---cc-----------------ccccc--cchhcccceEEEeecCCceEEEEecCCCc
Confidence 7788999987543321110000 00 00000 00135566777888888999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC--cc--eeehhhhccccceeEEEEec
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK--KH--SLVDVLERHNSGINALALSC 240 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~--~~--~~~~~~~~h~~~v~~i~~s~ 240 (362)
|.+|++. ++.+..+. .....-...+.+|+|+ +++++---.|++|.+--++. .+ .....+++|+..|..++|++
T Consensus 211 i~lw~lk-Gq~L~~id-tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn 288 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSID-TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN 288 (420)
T ss_pred EEEEecC-Cceeeeec-cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence 9999998 77776654 2223345578999999 45666666799997543221 11 12235678999999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccC-----CCCcEEEEEeecCc--cceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeee
Q 044557 241 DGSVLYSGACDRSIIVWEKEE-----DDGNILVVGALRGH--TKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCL 311 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~-----~~~~~~~~~~~~~h--~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~ 311 (362)
+...+++.|.||.+|+||..- .++.....+...-| ......+..+| +.++ .|....++++..+. ++..
T Consensus 289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA-~s~gs~l~~~~se~--g~~~ 365 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLA-VSFGSDLKVFASED--GKDY 365 (420)
T ss_pred CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEE-eecCCceEEEEccc--Cccc
Confidence 999999999999999999641 11111111111111 11222444444 4444 33345688886432 3333
Q ss_pred eEec-CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 312 AVLE-GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 312 ~~l~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
..++ .|+..|.+++|++++ ++++|++ |.-+|+..
T Consensus 366 ~~~e~~h~~~Is~is~~~~g---------~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 366 PELEDIHSTTISSISYSSDG---------KYIATCG-DRYVRVIR 400 (420)
T ss_pred hhHHHhhcCceeeEEecCCC---------cEEeeec-ceeeeeec
Confidence 3343 699999999997664 5677775 66777754
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-23 Score=173.15 Aligned_cols=284 Identities=19% Similarity=0.312 Sum_probs=198.2
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~ 85 (362)
+..+.|+.-.+.|.+|.|+ |.++++++.|-++++||...+..... +...+-.+..+.+. ...++.++
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t---------i~skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT---------INSKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE---------eecccccccEEEEecCCceEEEcc
Confidence 3445566678899999994 88999999999999999876432111 11111122222222 22333333
Q ss_pred --cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 86 --QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 86 --~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
.|.+||+-++...+. .--+.+|...|.+++.+|-+..+++++.|
T Consensus 76 tk~d~tIryLsl~dNky----------------------------------lRYF~GH~~~V~sL~~sP~~d~FlS~S~D 121 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKY----------------------------------LRYFPGHKKRVNSLSVSPKDDTFLSSSLD 121 (311)
T ss_pred CCCCCceEEEEeecCce----------------------------------EEEcCCCCceEEEEEecCCCCeEEecccC
Confidence 377888888765331 11235799999999999999999999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCC-CcceeehhhhccccceeEEEEecC
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGN-KKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~-~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
++||+||++..+|..-+.. ..-..++|.|+|.++ ++...+.|++||+..-. ................+.|.||||
T Consensus 122 ~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d 198 (311)
T KOG1446|consen 122 KTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD 198 (311)
T ss_pred CeEEeeEecCCCCceEEec---CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC
Confidence 9999999998888765543 233457899999854 45555599999998653 222222222244667899999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee---EEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI---LCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v---~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
|++|+.+...+.+++.|.-.+. +...+.++...- ....|.| .++++|+.||+|.+|+.. .+..+..+.|
T Consensus 199 GK~iLlsT~~s~~~~lDAf~G~----~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~--tg~~v~~~~~ 272 (311)
T KOG1446|consen 199 GKSILLSTNASFIYLLDAFDGT----VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE--TGKKVAVLRG 272 (311)
T ss_pred CCEEEEEeCCCcEEEEEccCCc----EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC--CCcEeeEecC
Confidence 9999999999999999987654 344455554332 3445555 499999999999999963 4566778887
Q ss_pred -CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 317 -HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 317 -h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|...+.++.|.|. -.+++|+ |..+-+|=.
T Consensus 273 ~~~~~~~~~~fnP~---------~~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 273 PNGGPVSCVRFNPR---------YAMFVSA--SSNLVFWLP 302 (311)
T ss_pred CCCCCccccccCCc---------eeeeeec--CceEEEEec
Confidence 8899999887653 2345555 568888843
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.2e-26 Score=202.11 Aligned_cols=275 Identities=23% Similarity=0.388 Sum_probs=197.4
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccce
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYT 106 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 106 (362)
++||+|||.||.||+|++.....+....+ ...+..|...+..+.... +.+++++.|-+|++|+...+.. .
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~---~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-----~ 108 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPY---IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-----F 108 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccch---hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-----h
Confidence 67899999999999999865433211111 011123445555554443 3599999999999999864320 0
Q ss_pred eeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE-ecCCCEEEEEECCCcEEEEECCCceE--EE-----
Q 044557 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL-TKDETLLYSVSWDRTIKIWRTSDFKC--LE----- 178 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~s~d~~i~iwd~~~~~~--~~----- 178 (362)
+ ..++..|.+-|.|+++ .++...+|+||-|+.|.+||++.+.. +.
T Consensus 109 c---------------------------~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 109 C---------------------------MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred h---------------------------HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence 0 0112358899999999 78888999999999999999997622 21
Q ss_pred ---eeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcE
Q 044557 179 ---SITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSI 254 (362)
Q Consensus 179 ---~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i 254 (362)
.+..++...|.+++.++.|. +++|+..+.+++||..+.... ..+.+|...|.++..++||..++++|.||+|
T Consensus 162 t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki----mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI 237 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI----MKLRGHTDNVRVLLVNDDGTRLLSASSDGTI 237 (735)
T ss_pred ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce----eeeeccccceEEEEEcCCCCeEeecCCCceE
Confidence 22236788999999999997 788999999999999886543 2456899999999999999999999999999
Q ss_pred EEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc
Q 044557 255 IVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 255 ~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
++||+..... +.++..|...|.++..+++ .+.+|+.||.|..=++... .++.. +..-..+|..+..+...+
T Consensus 238 rlWdLgqQrC----l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~-~~~tl-ick~daPv~~l~~~~~~~- 310 (735)
T KOG0308|consen 238 RLWDLGQQRC----LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP-AKSTL-ICKEDAPVLKLHLHEHDN- 310 (735)
T ss_pred Eeeeccccce----eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc-hhheE-eecCCCchhhhhhccccC-
Confidence 9999976442 3456779999999888765 7999999999987775432 11111 222334455554432221
Q ss_pred cCCCCCceEEEecCCCCcEEEEecc
Q 044557 333 CDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 333 ~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ +-++.+|+.|+-|...
T Consensus 311 ------~--~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 311 ------S--VWVTTTDSSIKRWKLE 327 (735)
T ss_pred ------C--ceeeeccccceecCCc
Confidence 1 2356788999999764
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.3e-25 Score=184.30 Aligned_cols=210 Identities=20% Similarity=0.333 Sum_probs=164.8
Q ss_pred eeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC-----------------c-eEEEeeeccCcccEEEEEEc
Q 044557 133 HKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD-----------------F-KCLESITNAHDDAINAVALS 194 (362)
Q Consensus 133 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-----------------~-~~~~~~~~~h~~~v~~v~~~ 194 (362)
++.+.+-.|+.++++.+|+|||.++|+||.|-.|+|.|++. . ..++++. .|.++|+++.|+
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FH 181 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFH 181 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeec
Confidence 34445567999999999999999999999999999999862 0 1244443 689999999999
Q ss_pred CCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec
Q 044557 195 DDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR 273 (362)
Q Consensus 195 ~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 273 (362)
|... |++++.|++||+||......+. ..+.++ ...+|.+|+|+|.|.+|+.|..-.++|+||+.+.+.. .....-.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKr-A~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf-vsanPd~ 258 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKR-AFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF-VSANPDD 258 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHH-HHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEe-eecCccc
Confidence 9887 7899999999999986533221 122222 3458999999999999999999999999999875532 2233456
Q ss_pred CccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEec-CCC-CcEEEEEeeecCCccCCCCCceEEEecCCCC
Q 044557 274 GHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLE-GHR-GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC 349 (362)
Q Consensus 274 ~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~-~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~ 349 (362)
+|++.|.++.+++ .+.+|+|.||.||+||... ..|+.++. +|. +.|.++.|..+ +++|.|.+.|.
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS--~rCv~t~~~AH~gsevcSa~Ftkn---------~kyiLsSG~DS 327 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS--NRCVRTIGNAHGGSEVCSAVFTKN---------GKYILSSGKDS 327 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeecccc--HHHHHHHHhhcCCceeeeEEEccC---------CeEEeecCCcc
Confidence 7999999999975 4899999999999999643 46676654 564 46788877644 46788999999
Q ss_pred cEEEEecc
Q 044557 350 DIKVWQIS 357 (362)
Q Consensus 350 ~i~~W~~~ 357 (362)
++++|++.
T Consensus 328 ~vkLWEi~ 335 (430)
T KOG0640|consen 328 TVKLWEIS 335 (430)
T ss_pred eeeeeeec
Confidence 99999984
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=185.81 Aligned_cols=246 Identities=20% Similarity=0.297 Sum_probs=193.6
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCceeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l~ 82 (362)
+..+.+.+|+||+..|+++.+. ...+++++.|..||||....... ..+...|+++|..+.. .+++++
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---------~~~~~~h~~~V~~ls~h~tgeYll 319 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---------PTSSRPHEEPVTGLSLHPTGEYLL 319 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC---------ccccccccccceeeeeccCCcEEE
Confidence 4567788999999999999996 45799999999999998754331 1223345677776644 578899
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee---cCceeEEEEecCCCEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH---VDAVSALALTKDETLLYS 159 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s 159 (362)
+++.|++..+.|+..+.. +.. ..+ .-.+++.+|+|||.+|++
T Consensus 320 sAs~d~~w~Fsd~~~g~~-------lt~----------------------------vs~~~s~v~~ts~~fHpDgLifgt 364 (506)
T KOG0289|consen 320 SASNDGTWAFSDISSGSQ-------LTV----------------------------VSDETSDVEYTSAAFHPDGLIFGT 364 (506)
T ss_pred EecCCceEEEEEccCCcE-------EEE----------------------------EeeccccceeEEeeEcCCceEEec
Confidence 999999999998876531 100 011 124789999999999999
Q ss_pred EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 160 VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
|..|+.|+|||+.+...+..+- +|+++|..++|+.+|. +++++.|+.|++||++.....+++. +. ...+|.++.|
T Consensus 365 gt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~--l~-~~~~v~s~~f 440 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ--LD-EKKEVNSLSF 440 (506)
T ss_pred cCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee--cc-ccccceeEEE
Confidence 9999999999999988777775 7999999999999998 8899999999999998765433331 11 2347999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
.+.|.+|+.+|.|=+|++++..+ ..+..+..+..|.+..+++.|... +++++|.|..++++.
T Consensus 441 D~SGt~L~~~g~~l~Vy~~~k~~--k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 441 DQSGTYLGIAGSDLQVYICKKKT--KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred cCCCCeEEeecceeEEEEEeccc--ccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 99999999999988888887554 345556677778888889999754 899999999999875
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.4e-24 Score=175.37 Aligned_cols=265 Identities=18% Similarity=0.267 Sum_probs=189.3
Q ss_pred ccCccceeeeEecC---cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcE
Q 044557 16 KGHNSYVSSLALAG---KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKI 90 (362)
Q Consensus 16 ~gH~~~V~~l~~~~---~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i 90 (362)
..-.+.|.+|+|+. .+++.+|+|++||+|+++...... + +.+..+.+++.++.++.+ ++++++.|+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----P--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCccc-----c--hhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence 34578999999974 467799999999999987531111 0 122335788989988765 59999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC--EEEEEECCCcEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET--LLYSVSWDRTIKI 168 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~i 168 (362)
++||+..+.. ..+..|.++|.++.|-+... +|+|||+|++|+.
T Consensus 97 k~wDL~S~Q~-----------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf 141 (347)
T KOG0647|consen 97 KLWDLASGQV-----------------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF 141 (347)
T ss_pred EEEEccCCCe-----------------------------------eeeeecccceeEEEEecCCCcceeEecccccceee
Confidence 9999986531 12245889999998876554 8999999999999
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
||++....+.++..+. .+.++..- ...++.+..++.|.+|+++.+....+.+. ..-+-.+.+|++.+|....+.|
T Consensus 142 WD~R~~~pv~t~~LPe--RvYa~Dv~-~pm~vVata~r~i~vynL~n~~te~k~~~--SpLk~Q~R~va~f~d~~~~alG 216 (347)
T KOG0647|consen 142 WDTRSSNPVATLQLPE--RVYAADVL-YPMAVVATAERHIAVYNLENPPTEFKRIE--SPLKWQTRCVACFQDKDGFALG 216 (347)
T ss_pred cccCCCCeeeeeeccc--eeeehhcc-CceeEEEecCCcEEEEEcCCCcchhhhhc--CcccceeeEEEEEecCCceEee
Confidence 9999988888776543 33333221 12356788899999999976643222211 1123457899999999888999
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCcc---------ceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHT---------KSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
+-.|.+-+..+..+... .--.++.|. -.|.+++|.+. .|+|++.||++.+||-..+ ..+++.+-|
T Consensus 217 siEGrv~iq~id~~~~~--~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar--~kLk~s~~~ 292 (347)
T KOG0647|consen 217 SIEGRVAIQYIDDPNPK--DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR--TKLKTSETH 292 (347)
T ss_pred eecceEEEEecCCCCcc--CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh--hhhhccCcC
Confidence 99999999888764221 111233343 23567788764 7999999999999994322 336677789
Q ss_pred CCcEEEEEeeecCC
Q 044557 318 RGPVKCLAAAIDND 331 (362)
Q Consensus 318 ~~~v~~~~~~~~~~ 331 (362)
..+|++..|+.++.
T Consensus 293 ~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 293 PQPITCCSFNRNGS 306 (347)
T ss_pred CCccceeEecCCCC
Confidence 99999999976554
No 97
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=4.5e-25 Score=198.38 Aligned_cols=237 Identities=24% Similarity=0.414 Sum_probs=187.5
Q ss_pred eEEeecceeEEEEEcCce-eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 63 IVAVGKGAVKSLVVLADK-LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 63 ~~~~~~~~v~~i~~~~~~-l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
.+..|...|..+....+. +++++.||++++|+-...+... ...+.+|
T Consensus 9 ~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~--------------------------------~~~~~~~ 56 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE--------------------------------THAFEGP 56 (745)
T ss_pred EeccCccchheeEecCCeEEeecCCCCceeeeeccCccccc--------------------------------ceecccC
Confidence 344566677777665554 8899999999999864332100 0112234
Q ss_pred cCceeE-EEEec-CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCc
Q 044557 142 VDAVSA-LALTK-DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 142 ~~~v~~-~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~ 219 (362)
.+-|.+ +++.+ +.-.+++|+.|.+|.+|...+..++..+. +|...|.++....++.+++|+.|.++++|-...
T Consensus 57 ~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~---- 131 (745)
T KOG0301|consen 57 KGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE---- 131 (745)
T ss_pred cceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh-ccccceeeeecCCcCceEecccccceEEecchh----
Confidence 444444 66664 34458999999999999999998888775 899999999988888899999999999996532
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcE
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTI 298 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i 298 (362)
+...+++|+.+|.++..-|++ .++|||.|.+|++|.-.. .+.++.||++.|+.+++-++ .++|++-||.|
T Consensus 132 --l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~------~l~tf~gHtD~VRgL~vl~~~~flScsNDg~I 202 (745)
T KOG0301|consen 132 --LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT------LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSI 202 (745)
T ss_pred --hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc------hhhhhccchhheeeeEEecCCCeEeecCCceE
Confidence 344578999999999999987 889999999999996532 46678999999999998766 89999999999
Q ss_pred EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 299 RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|+|+. .+.++..+.||++-|.+++..++. ..|+|+|.|+++|||+..
T Consensus 203 r~w~~---~ge~l~~~~ghtn~vYsis~~~~~---------~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 203 RLWDL---DGEVLLEMHGHTNFVYSISMALSD---------GLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEec---cCceeeeeeccceEEEEEEecCCC---------CeEEEecCCceEEEeecC
Confidence 99995 356788999999999999854332 368999999999999863
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.8e-24 Score=183.50 Aligned_cols=292 Identities=24% Similarity=0.386 Sum_probs=212.6
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcc---cce------eeeccceeE-EeecceeEEEEEcCc
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSE---LDQ------EFLSNNNIV-AVGKGAVKSLVVLAD 79 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~---~~~------~~~~~~~~~-~~~~~~v~~i~~~~~ 79 (362)
+..+..|.-+|.++.++ .++.++++.||+|--|++.+.... ++. .+.. .... ..|...+.++++++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~-~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNP-LKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCC-CCcccccccceeEEEEEcCC
Confidence 56678999999999995 679999999999999998764311 111 0000 0000 245567778887765
Q ss_pred --eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 80 --KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 80 --~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
+|++++.|..|.+|+.++.+.. +.+.+|.+.|.+++|-.....|
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv----------------------------------~~~~ghr~~V~~L~fr~gt~~l 259 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHV----------------------------------KVFKGHRGAVSSLAFRKGTSEL 259 (479)
T ss_pred CcEEEecCCCceEEEecCcccchh----------------------------------hcccccccceeeeeeecCccce
Confidence 5999999999999998765421 1234799999999998888889
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEE-EeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYT-GSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
++++.|+.|++|+++....+.++. +|.+.|.++....-+++++ |+.|+++++|++.... ++ .+.+|...+-|+
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---ql--ifrg~~~sidcv 333 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLY-GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---QL--IFRGGEGSIDCV 333 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHh-CCccceeeechhcccceEEeccccceeEEEeccccc---ee--eeeCCCCCeeeE
Confidence 999999999999999887777664 8999999998877777776 4599999999994432 22 234677788898
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec----------CccceeEEEEEe--CCeEEEeeCCCcEEEeeCC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR----------GHTKSILCMAVV--SDLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----------~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~ 304 (362)
+|- +..++++||.||.|.+|++....+ +. +.... .+.-.|++++.. .+++++||.+|+||+|...
T Consensus 334 ~~I-n~~HfvsGSdnG~IaLWs~~KKkp-lf-~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 334 AFI-NDEHFVSGSDNGSIALWSLLKKKP-LF-TSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred EEe-cccceeeccCCceEEEeeecccCc-ee-EeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 886 457889999999999999875332 21 11111 112267777765 4699999999999999875
Q ss_pred CC--ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 305 DR--NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 305 ~~--~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.. ...++..+. -.+.|++++|++++. ++++..+....+--|-.
T Consensus 411 ~g~r~i~~l~~ls-~~GfVNsl~f~~sgk--------~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 411 DGLRAINLLYSLS-LVGFVNSLAFSNSGK--------RIVAGIGKEHRLGRWWC 455 (479)
T ss_pred CCccccceeeecc-cccEEEEEEEccCCC--------EEEEecccccccceeeE
Confidence 42 345555554 677899999987654 35666666666555543
No 99
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=5.9e-24 Score=191.20 Aligned_cols=341 Identities=23% Similarity=0.315 Sum_probs=228.7
Q ss_pred cceeeecccCccceeeeEec---C--cEEEEecCCCeEEEeecCCCC--cccce-----------eeec---------cc
Q 044557 9 HHCLTTLKGHNSYVSSLALA---G--KFLYTGSSDNEVRSWDCNTFS--SELDQ-----------EFLS---------NN 61 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~---~--~~l~t~s~Dg~i~vWd~~~~~--~~~~~-----------~~~~---------~~ 61 (362)
++....|+||.+.|.+|+|. + -+|||+|.|..||||.+.... .+... .+.. ..
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 45777899999999999993 2 379999999999999874321 00000 0000 01
Q ss_pred eeEEeecceeEEEEEcCce--eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhh-hhccccc----------cc
Q 044557 62 NIVAVGKGAVKSLVVLADK--LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAI-KLLMPKN----------HV 128 (362)
Q Consensus 62 ~~~~~~~~~v~~i~~~~~~--l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~ 128 (362)
.++..|+..|.++.+.+.+ |+++++|.++-+|........-....++........... .++.+.. ..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 1223467788888887765 999999999999986543221111112221110000000 1122222 12
Q ss_pred eeeeeee-------eEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC----------------------------
Q 044557 129 QIRRHKT-------CTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD---------------------------- 173 (362)
Q Consensus 129 ~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~---------------------------- 173 (362)
..++.+. ....+|.+.|..++|+|.|.+|.++|.|.+-|++-.-.
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 2333111 22457999999999999999999999999998873210
Q ss_pred -------ceEEEee------------------------------------------------------------------
Q 044557 174 -------FKCLESI------------------------------------------------------------------ 180 (362)
Q Consensus 174 -------~~~~~~~------------------------------------------------------------------ 180 (362)
.+.++.+
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 0000000
Q ss_pred --------------------eccCcccEEEEEEcCCCcE-EEEeC-----CCeEEEEeCCCCCCcceeehhhhcccccee
Q 044557 181 --------------------TNAHDDAINAVALSDDGDV-YTGSA-----DKKIKVWRRSPGNKKHSLVDVLERHNSGIN 234 (362)
Q Consensus 181 --------------------~~~h~~~v~~v~~~~~~~~-~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~ 234 (362)
..+|...|.+++.+|++.+ +|++. .-.|++|+..+.... ..+..|...|+
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~----~~L~~HsLTVT 576 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV----QELEGHSLTVT 576 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh----heecccceEEE
Confidence 0157778999999999984 44432 346899988766433 24678999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
.++|||||++|++.|.|+++.+|...............+.|+.=|.+..|+++ +++|+|.|++|++|...+..-+++.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~ 656 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS 656 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh
Confidence 99999999999999999999999986544333334457789988899999876 6999999999999986443222232
Q ss_pred --EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 313 --VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 313 --~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
....+..+|+++++.|.. -+..+..++.|=.-|.|.||...
T Consensus 657 ~~a~~~~~~aVTAv~~~~~~----~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 657 RFACLKFSLAVTAVAYLPVD----HNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhchhccCCceeeEEeeccc----cccccceEEEEecccEEEEEecc
Confidence 244689999999998752 23445678899999999999965
No 100
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=9.5e-24 Score=173.33 Aligned_cols=260 Identities=16% Similarity=0.250 Sum_probs=188.8
Q ss_pred ccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCcEEEEec
Q 044557 19 NSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHKIRVWKI 95 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~i~~w~~ 95 (362)
.+.|++|.|+ ++.|+.+++||++|+||+...+ +...+ .+.+++.+..+.++ .+++|+.||.|+.+|+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~--------~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKF--------KHGAPLLDCAFADESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhhe--------ecCCceeeeeccCCceEEEeccCceEEEEEe
Confidence 6789999996 5567777799999999987642 22222 24567777776654 5999999999999999
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK 175 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 175 (362)
+.+.. ..+..|.+.|+|+.+.+....+++||+|++|++||.+...
T Consensus 83 n~~~~-----------------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 83 NTGNE-----------------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred cCCcc-----------------------------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 86542 1123588999999999999999999999999999998755
Q ss_pred EEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 176 CLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 176 ~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
....+.. ...|.++... +..|+.|+.|..|.+||+.+...... .....-+-.+.+|++-|++.-.+.++-||+|.
T Consensus 128 ~~~~~d~--~kkVy~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~~q--~reS~lkyqtR~v~~~pn~eGy~~sSieGRVa 202 (323)
T KOG1036|consen 128 VVGTFDQ--GKKVYCMDVS-GNRLVVGTSDRKVLIYDLRNLDEPFQ--RRESSLKYQTRCVALVPNGEGYVVSSIEGRVA 202 (323)
T ss_pred ccccccc--CceEEEEecc-CCEEEEeecCceEEEEEcccccchhh--hccccceeEEEEEEEecCCCceEEEeecceEE
Confidence 5554432 3377777665 34588999999999999986542211 11112345689999999999999999999987
Q ss_pred EEeccCCCCcEEEEEeecCccc---------eeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEE
Q 044557 256 VWEKEEDDGNILVVGALRGHTK---------SILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~ 324 (362)
+=.++..+.....-..++.|.. +|.+++|++- .++||+.||.|.+||...+ +.+..|.+-...|..+
T Consensus 203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r--Krl~q~~~~~~SI~sl 280 (323)
T KOG1036|consen 203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR--KRLKQLAKYETSISSL 280 (323)
T ss_pred EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch--hhhhhccCCCCceEEE
Confidence 7555433111111223444532 5788889864 7999999999999997543 3466676667789999
Q ss_pred EeeecC
Q 044557 325 AAAIDN 330 (362)
Q Consensus 325 ~~~~~~ 330 (362)
+|+.++
T Consensus 281 sfs~dG 286 (323)
T KOG1036|consen 281 SFSMDG 286 (323)
T ss_pred EeccCC
Confidence 997654
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-22 Score=159.49 Aligned_cols=309 Identities=18% Similarity=0.219 Sum_probs=216.7
Q ss_pred cceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccc-eee-ecccee----EEeecceeEEEE
Q 044557 4 LSVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELD-QEF-LSNNNI----VAVGKGAVKSLV 75 (362)
Q Consensus 4 ~~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~-~~~-~~~~~~----~~~~~~~v~~i~ 75 (362)
.|.+-+.++.+|+. +..|.+++|. |.+.+.||...+.|+--......... .+. .....+ -..|++.+.|..
T Consensus 18 ~~k~~f~~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 18 KEKKHFEAINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred ccccceEEEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 34555667776665 6779999994 78999999999999875432110000 000 000111 134678899999
Q ss_pred EcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-
Q 044557 76 VLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK- 152 (362)
Q Consensus 76 ~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~- 152 (362)
+++. .+++++.|.+|++...+..... . .....++.-|.+.|+.++|-.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~-------~----------------------~g~dle~nmhdgtirdl~fld~ 147 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCN-------A----------------------TGHDLEFNMHDGTIRDLAFLDD 147 (350)
T ss_pred ecCccCeEEecCCCceEEEEeccccccc-------c----------------------cCcceeeeecCCceeeeEEecC
Confidence 8865 4889999999999876542210 0 001123345889999999943
Q ss_pred ---CCCEEEEEE-CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 153 ---DETLLYSVS-WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 153 ---~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
.+.+|++++ .|-.|.+-|...++.++.+. +|++-|.++ ++-+| .+++|+.|.+|+.||+.-......+-..+.
T Consensus 148 ~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~ 225 (350)
T KOG0641|consen 148 PESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH 225 (350)
T ss_pred CCcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCccc
Confidence 345777754 56677777888888888775 899988776 34445 488999999999999875543333322222
Q ss_pred c---cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 228 R---HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 228 ~---h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
. ....|.++++.|.|+.|++|-.|....+||++.++ .+..+.-|...|.|+.|++. +++++|.|..||+=|
T Consensus 226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r----~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR----MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc----eeeeeCCCccceeEEEeCCCceEEEEecccceEEEee
Confidence 2 13679999999999999999999999999998644 34556779999999999986 899999999999998
Q ss_pred CCCCc--eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GIDRN--YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+...- .-++-..-.|++.+..+.|+|... -++|.|.|.++.+|-+.
T Consensus 302 lqgdla~el~~~vv~ehkdk~i~~rwh~~d~---------sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 302 LQGDLAHELPIMVVAEHKDKAIQCRWHPQDF---------SFISSSADKTATLWALN 349 (350)
T ss_pred cccchhhcCceEEEEeccCceEEEEecCccc---------eeeeccCcceEEEeccC
Confidence 53211 111223346888888888877543 36799999999999874
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.6e-24 Score=191.92 Aligned_cols=236 Identities=28% Similarity=0.357 Sum_probs=190.1
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEe-ecceeEEEEEcCceeEEEecCCcEEEEe
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAV-GKGAVKSLVVLADKLFSAHQDHKIRVWK 94 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~l~s~~~dg~i~~w~ 94 (362)
+...|+++.++ |.+|+.|..+|+|.|||.+...... . +.. |...|.++.+....+.+|+.|+.|..+|
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~--~-------~~~~h~~rvg~laW~~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR--T-------LRGSHASRVGSLAWNSSVLSSGSRDGKILNHD 286 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc--c-------ccCCcCceeEEEeccCceEEEecCCCcEEEEE
Confidence 37899999995 8999999999999999976532111 1 112 5678899999988899999999999999
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCc
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF 174 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 174 (362)
++..+.... ...+|...|-.++|++|+++||+|+.|+.+.|||....
T Consensus 287 vR~~~~~~~---------------------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 287 VRISQHVVS---------------------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred Eecchhhhh---------------------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 875431100 13478999999999999999999999999999999777
Q ss_pred eEEEeeeccCcccEEEEEEcCCC--cEEEE--eCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE--
Q 044557 175 KCLESITNAHDDAINAVALSDDG--DVYTG--SADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG-- 248 (362)
Q Consensus 175 ~~~~~~~~~h~~~v~~v~~~~~~--~~~s~--~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-- 248 (362)
+.+..+. .|..+|..++|+|-. .||+| +.|+.|++||..++.....+ .-...|..|.|++..+.|+++
T Consensus 334 ~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-----dtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 334 EPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-----DTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred cccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----ccCCceeeEEEcCCCCEEEEecC
Confidence 7777665 799999999999854 47764 57999999999887644332 235679999999988766654
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~ 305 (362)
-.++.|.+|+..+ +..+..+.+|..+|..++++++ .+++|+.|.++|+|++..
T Consensus 408 ~s~n~i~lw~~ps----~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 408 YSENQITLWKYPS----MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCcEEEEeccc----cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 3577899999875 3356778999999999999876 899999999999999765
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=9e-24 Score=193.63 Aligned_cols=332 Identities=19% Similarity=0.300 Sum_probs=226.5
Q ss_pred eeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEE---EcCceeEEEecC
Q 044557 11 CLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLV---VLADKLFSAHQD 87 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~---~~~~~l~s~~~d 87 (362)
..+++.+|.+.|.-+...|.+++++..++.+.+|+......+. +.. ..+.......+.++. .+-++++.|+.+
T Consensus 106 i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~---~l~-~~~~~~~~~~Ital~HP~TYLNKIvvGs~~ 181 (910)
T KOG1539|consen 106 IRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL---YLQ-STFLKVEGDFITALLHPSTYLNKIVVGSSQ 181 (910)
T ss_pred EEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccc---ccc-ceeeeccCCceeeEecchhheeeEEEeecC
Confidence 3457788999999999999999999999999999976532111 100 011111122255543 344779999999
Q ss_pred CcEEEEecCCCCCCcc------cceeeeeccCCCchhhhhcccccccee---eeeeeeEEeeec-CceeEEEEecCCC-E
Q 044557 88 HKIRVWKINNQEPDHQ------KYTRLATLPTLGDRAIKLLMPKNHVQI---RRHKTCTWVHHV-DAVSALALTKDET-L 156 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~-~~v~~~~~~~~~~-~ 156 (362)
|.+++|+++.+...+. .++.+...|..+ ++.+....+.+.+ +..+...-..|. ++|++++|.-||+ .
T Consensus 182 G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~ 259 (910)
T KOG1539|consen 182 GRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPL 259 (910)
T ss_pred CcEEEEEeccCcEEEEecccccceeEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCee
Confidence 9999999987764321 222222222221 1112222333333 333433344564 8999999998886 6
Q ss_pred EEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 157 LYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 157 l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
+|+|+..|.+.+||++..+.+..+...|.+.|....|.|... +++++.|+..++|-.+++.....+.....+|..|..+
T Consensus 260 las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ 339 (910)
T KOG1539|consen 260 LASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC 339 (910)
T ss_pred EEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh
Confidence 778888899999999999988888889999999999998776 7789999999999777655444555555677777777
Q ss_pred EEEe-cCCCEEEEEcCCCcEEEEec-------------------------------------------------------
Q 044557 236 LALS-CDGSVLYSGACDRSIIVWEK------------------------------------------------------- 259 (362)
Q Consensus 236 i~~s-~~~~~l~s~~~d~~i~~wd~------------------------------------------------------- 259 (362)
|.|. .+|.++.+++.|++.+.+++
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence 7776 56777777777777766652
Q ss_pred ----------------------------------------------------------cCCCCcEEEEEeecCccceeEE
Q 044557 260 ----------------------------------------------------------EEDDGNILVVGALRGHTKSILC 281 (362)
Q Consensus 260 ----------------------------------------------------------~~~~~~~~~~~~~~~h~~~v~~ 281 (362)
+++-... ..+.-+.|...|+.
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~-sf~~~~ah~~~V~g 498 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK-SFGDSPAHKGEVTG 498 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec-ccccCccccCceeE
Confidence 1110000 00011247778888
Q ss_pred EEEeC--CeEEEeeCCCcEEEeeCCCCc---------------------------------------eeeeeEecCCCCc
Q 044557 282 MAVVS--DLVCSGSADKTIRIWRGIDRN---------------------------------------YTCLAVLEGHRGP 320 (362)
Q Consensus 282 ~~~~~--~~~~s~s~D~~i~~W~~~~~~---------------------------------------~~~~~~l~~h~~~ 320 (362)
++.++ ..++|++.||.+++|+..... .+.+..+.||.+.
T Consensus 499 la~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr 578 (910)
T KOG1539|consen 499 LAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR 578 (910)
T ss_pred EEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc
Confidence 88764 479999999999999854221 0112236899999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|+++.|+|++ ++|++++.|++||+||+..
T Consensus 579 itd~~FS~Dg---------rWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 579 ITDMTFSPDG---------RWLISASMDSTIRTWDLPT 607 (910)
T ss_pred eeeeEeCCCC---------cEEEEeecCCcEEEEeccC
Confidence 9999998764 6899999999999999964
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.4e-24 Score=183.64 Aligned_cols=237 Identities=20% Similarity=0.379 Sum_probs=181.0
Q ss_pred eecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc---eeEEEecC
Q 044557 13 TTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD---KLFSAHQD 87 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~l~s~~~d 87 (362)
+++.-..+.|.++.| +|++++.|+..|.|+++|.++ .... ..+..|..++..+.+.+. .+.+|+.|
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iL-------R~~~ah~apv~~~~f~~~d~t~l~s~sDd 132 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVIL-------RQLYAHQAPVHVTKFSPQDNTMLVSGSDD 132 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHHH-------HHHhhccCceeEEEecccCCeEEEecCCC
Confidence 345567788999999 599999999999999999543 1111 111234556666655432 37788999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEECCCcE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSWDRTI 166 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i 166 (362)
+.+++||+.+.. ....+.+|++-|+|.+++|... +++|||.||+|
T Consensus 133 ~v~k~~d~s~a~----------------------------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 133 KVVKYWDLSTAY----------------------------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred ceEEEEEcCCcE----------------------------------EEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 999999986532 0123457999999999998655 89999999999
Q ss_pred EEEECCCc-eEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 167 KIWRTSDF-KCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 167 ~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
|+||++.. ..+.++ .|..+|..+.+-|.|.+++.+....||+||+.++.. ++..+..|...|+|+++..++..|
T Consensus 179 rl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred EEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCce---ehhhhhcccceEEEEEeecCCceE
Confidence 99999876 444444 588999999999998766555667999999987753 344455599999999999999999
Q ss_pred EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEee
Q 044557 246 YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWR 302 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~ 302 (362)
++||.|+.|++||..+ ...+..++ -.++|.+++.++ ..++.|-.||.+-+=+
T Consensus 254 lS~sLD~~VKVfd~t~----~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 254 LSGSLDRHVKVFDTTN----YKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred eecccccceEEEEccc----eEEEEeee-cccceeeEEecCCCceEEEecccceeeeeh
Confidence 9999999999999643 34555554 367899999987 4889999999876553
No 105
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1.8e-23 Score=188.10 Aligned_cols=330 Identities=19% Similarity=0.234 Sum_probs=216.5
Q ss_pred eeeecccCccceeeeEec--Cc---EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 11 CLTTLKGHNSYVSSLALA--GK---FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~---~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
...+|.||.++|+|+.+- ++ +++||+.|++|++|.++.........+. .+...+.++......+...+
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~-------g~~~~~~cv~a~~~~~~~~~ 118 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ-------GHCKECVCVVARSSVMTCKA 118 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec-------CcceeEEEEEeeeeEEEeec
Confidence 456799999999999983 33 7999999999999998621111111110 11222333222222222337
Q ss_pred cCCcEEEEecCCCCCC---cccc-------eeeeeccCCCchhhhhcccccccee------eeeeeeEEeeecCceeEEE
Q 044557 86 QDHKIRVWKINNQEPD---HQKY-------TRLATLPTLGDRAIKLLMPKNHVQI------RRHKTCTWVHHVDAVSALA 149 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~v~~~~ 149 (362)
.|+++++|+.+..+.- ..++ .++..++..+.....+......+.+ .-.+...+.+|.+.|.+++
T Consensus 119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~ 198 (764)
T KOG1063|consen 119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA 198 (764)
T ss_pred cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence 8999999998543310 0001 1122222100000000000000111 1134556779999999999
Q ss_pred EecCC---CEEEEEECCCcEEEEECCCce---------------------EE---E------eeeccCcccEEEEEEcCC
Q 044557 150 LTKDE---TLLYSVSWDRTIKIWRTSDFK---------------------CL---E------SITNAHDDAINAVALSDD 196 (362)
Q Consensus 150 ~~~~~---~~l~s~s~d~~i~iwd~~~~~---------------------~~---~------~~~~~h~~~v~~v~~~~~ 196 (362)
|...+ -+||++|+|..||||.+.-+. .+ . .+..+|++.|.++.|+|.
T Consensus 199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~ 278 (764)
T KOG1063|consen 199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE 278 (764)
T ss_pred hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc
Confidence 97644 489999999999999763211 11 1 234589999999999999
Q ss_pred C-cEEEEeCCCeEEEEeCCCCCCccee---ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEee
Q 044557 197 G-DVYTGSADKKIKVWRRSPGNKKHSL---VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGAL 272 (362)
Q Consensus 197 ~-~~~s~~~dg~i~iw~~~~~~~~~~~---~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 272 (362)
+ .|++++.|+++.+|..++....-.. ...+.+...+.....|+|++..+++-|.-|-.++|...+ ..........
T Consensus 279 ~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d-~~~w~~~~~i 357 (764)
T KOG1063|consen 279 GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD-KTFWTQEPVI 357 (764)
T ss_pred hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC-ccceeecccc
Confidence 9 5999999999999987653221111 122223345678899999999999999999999998332 3344455567
Q ss_pred cCccceeEEEEEe--CCeEEEeeCCCcEEEeeCC--CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCC
Q 044557 273 RGHTKSILCMAVV--SDLVCSGSADKTIRIWRGI--DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD 348 (362)
Q Consensus 273 ~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~--~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D 348 (362)
.||.+.|..++|. +++++|+|.|.+-|++--. ...+..++.-+-|.-..+|++|.++. ..++||.++
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~---------~~FVSgAdE 428 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED---------LQFVSGADE 428 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC---------ceeeecccc
Confidence 8999999999997 5699999999999999532 23345555555677789999998642 247899999
Q ss_pred CcEEEEecc
Q 044557 349 CDIKVWQIS 357 (362)
Q Consensus 349 ~~i~~W~~~ 357 (362)
..+|+++.+
T Consensus 429 KVlRvF~aP 437 (764)
T KOG1063|consen 429 KVLRVFEAP 437 (764)
T ss_pred eeeeeecCc
Confidence 999999875
No 106
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.6e-23 Score=187.76 Aligned_cols=271 Identities=21% Similarity=0.257 Sum_probs=185.7
Q ss_pred EEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe
Q 044557 72 KSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT 151 (362)
Q Consensus 72 ~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 151 (362)
.||.++.+.++.|+.+|.|++|+-.+-+. +.++|.......... +..+........-........++.|+
T Consensus 264 nCIcVs~r~I~cgCa~g~vrlFnp~tL~y-------~~Tlpr~halg~d~a---~~~q~~~~~s~~~~a~fPD~IA~~Fd 333 (1080)
T KOG1408|consen 264 NCICVSSRLIACGCAKGMVRLFNPETLDY-------AGTLPRSHALGSDTA---NLSQPEPKNSESSPAIFPDAIACQFD 333 (1080)
T ss_pred ceeeeecceEEEeeccceeeecCcchhhh-------ccccccccccccchh---hcccccccccccCcccCCceeEEEec
Confidence 35667778899999999999998654331 122222110000000 00000000000000111234567899
Q ss_pred cCCCEEEEEECCCcEEEEECCCceEEEee--eccCcccEEEEEEcC------------CCcEEEEeCCCeEEEEeCCCCC
Q 044557 152 KDETLLYSVSWDRTIKIWRTSDFKCLESI--TNAHDDAINAVALSD------------DGDVYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~h~~~v~~v~~~~------------~~~~~s~~~dg~i~iw~~~~~~ 217 (362)
|....|.+.-.|..++|||+++.+.+.+. ..-|...|++|..-| .+-|.+++.|++||+|+++...
T Consensus 334 et~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct 413 (1080)
T KOG1408|consen 334 ETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT 413 (1080)
T ss_pred CCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc
Confidence 99999999999999999999875432211 124788888876533 3458899999999999987632
Q ss_pred Cccee------------e---------------------hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC
Q 044557 218 KKHSL------------V---------------------DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG 264 (362)
Q Consensus 218 ~~~~~------------~---------------------~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 264 (362)
....+ + ...-....++.+++++|+|++|++|..-|++|+|++.+.+
T Consensus 414 nn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~- 492 (1080)
T KOG1408|consen 414 NNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE- 492 (1080)
T ss_pred ccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-
Confidence 21110 0 0001234578999999999999999999999999998643
Q ss_pred cEEEEEeecCccceeEEEEEeCC-----eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCcc------
Q 044557 265 NILVVGALRGHTKSILCMAVVSD-----LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRC------ 333 (362)
Q Consensus 265 ~~~~~~~~~~h~~~v~~~~~~~~-----~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~------ 333 (362)
.+-.++.|...|+|+.|+.. +|+++|.|+-|.++|. .+++.++++|.+|++.|+++.|.-++.+.
T Consensus 493 ---~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv-~rny~l~qtld~HSssITsvKFa~~gln~~MiscG 568 (1080)
T KOG1408|consen 493 ---YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV-KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG 568 (1080)
T ss_pred ---hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec-ccccchhhhhcccccceeEEEEeecCCceEEEecc
Confidence 33456789999999999742 7999999999999996 57888999999999999999998765210
Q ss_pred ----------------------------------CCCCCceEEEecCCCCcEEEEecc
Q 044557 334 ----------------------------------DSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 334 ----------------------------------~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+..++.+++++++.|..|||+++.
T Consensus 569 ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~ 626 (1080)
T KOG1408|consen 569 ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE 626 (1080)
T ss_pred CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence 011345789999999999999985
No 107
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=2.9e-22 Score=174.44 Aligned_cols=309 Identities=23% Similarity=0.328 Sum_probs=213.4
Q ss_pred eecccC-ccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCc
Q 044557 13 TTLKGH-NSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHK 89 (362)
Q Consensus 13 ~tl~gH-~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~ 89 (362)
..++++ ...|.|+.|. +.-++||+++|+|.||+..+.. . ...+ ..|.+.|.++....+ .|++|+.|+.
T Consensus 239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~--~------~k~~-~aH~ggv~~L~~lr~GtllSGgKDRk 309 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNR--I------SKQV-HAHDGGVFSLCMLRDGTLLSGGKDRK 309 (626)
T ss_pred eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCce--E------EeEe-eecCCceEEEEEecCccEeecCccce
Confidence 345554 3678999995 5679999999999999864321 1 0112 267888999877765 5999999999
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhh-------hccccccce-----eeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIK-------LLMPKNHVQ-----IRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
|..||-+..... -..+|...+.+.. ++....+.. +.+.-..+.++|.+....++.+|+.+.+
T Consensus 310 i~~Wd~~y~k~r------~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~ 383 (626)
T KOG2106|consen 310 IILWDDNYRKLR------ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQL 383 (626)
T ss_pred EEeccccccccc------cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhe
Confidence 999983221110 0111111111111 111211111 1222334567899999999999999999
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
++++.|+.+++|+ ..+.+- ...-.+++.++.|.|.|.++.|...|.-.+.|.++.. ++..... +.++++++
T Consensus 384 ~T~gqdk~v~lW~--~~k~~w--t~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~----lv~~~~d-~~~ls~v~ 454 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHKLEW--TKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD----LVTIHTD-NEQLSVVR 454 (626)
T ss_pred eeccCcceEEEcc--CCceeE--EEEecCceeEeeccCcceEEEeeccceEEEEecccce----eEEEEec-CCceEEEE
Confidence 9999999999999 333332 2234678899999999988999999999999987743 2222222 77899999
Q ss_pred EecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC----------
Q 044557 238 LSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID---------- 305 (362)
Q Consensus 238 ~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~---------- 305 (362)
|+|+|.+||.|+.|+.|++|-+..+.......+...+ ..|+.+.|+.+ ++.+-|.|-.|..|+...
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDv 532 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDV 532 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecce
Confidence 9999999999999999999998776655555555544 67777877654 778888887777774210
Q ss_pred ---------------------------------------------------CceeeeeEecCCCCcEEEEEeeecCCccC
Q 044557 306 ---------------------------------------------------RNYTCLAVLEGHRGPVKCLAAAIDNDRCD 334 (362)
Q Consensus 306 ---------------------------------------------------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~ 334 (362)
..-...+.+.+|++-|.+++|..+.
T Consensus 533 kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d---- 608 (626)
T KOG2106|consen 533 KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKD---- 608 (626)
T ss_pred eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCC----
Confidence 0011234578999999999997543
Q ss_pred CCCCceEEEecCCCCcEEEEec
Q 044557 335 SSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 335 ~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
..++.+| .|..|..|++
T Consensus 609 ----~~li~tg-~D~Si~qW~l 625 (626)
T KOG2106|consen 609 ----SHLISTG-KDTSIMQWRL 625 (626)
T ss_pred ----ceEEecC-CCceEEEEEe
Confidence 2345444 9999999986
No 108
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.6e-24 Score=196.92 Aligned_cols=200 Identities=17% Similarity=0.243 Sum_probs=153.8
Q ss_pred EEe-eecCceeEEEEecCCCEEEEEECCCcEEEEECCCce----------------------------E-----------
Q 044557 137 TWV-HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK----------------------------C----------- 176 (362)
Q Consensus 137 ~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----------------------------~----------- 176 (362)
... .|.+.|.++.|++||+|||+||+|+.|+||.+..-+ .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 799999999999999999999999999999864400 0
Q ss_pred ---------------------EEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 177 ---------------------LESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 177 ---------------------~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
+.. ..+|.+.|.++.|+.++.|++++.|++||+|++....+. .++ .|+.-|+|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~e-f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL----~~F-~HndfVTc 414 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCE-FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL----KVF-SHNDFVTC 414 (712)
T ss_pred cccCCccccCCCccccccccchhh-hhccchhheecccccCCeeEeccccccEEeecCCCccee----eEE-ecCCeeEE
Confidence 000 136999999999999999999999999999998765433 332 59999999
Q ss_pred EEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 236 LALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 236 i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
|+|+| |.+|+++|+.|+.||+|++...+ . ..+..-..-|++++|.|+ ..+.|+-+|.+++|+..+-++..-.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~--V---v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKK--V---VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCe--e---EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 99999 88999999999999999997532 2 223333467899998765 8999999999999986543332211
Q ss_pred Eec-------CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 313 VLE-------GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 313 ~l~-------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+. .|. .|+++.|.|... + . |...|.|..|||+|.
T Consensus 490 ~I~~~~~Kk~~~~-rITG~Q~~p~~~------~-~-vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 490 HIRLHNKKKKQGK-RITGLQFFPGDP------D-E-VLVTSNDSRIRIYDG 531 (712)
T ss_pred eEeeccCccccCc-eeeeeEecCCCC------C-e-EEEecCCCceEEEec
Confidence 111 233 899999987532 1 3 446678999999998
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.5e-24 Score=174.63 Aligned_cols=261 Identities=20% Similarity=0.347 Sum_probs=191.4
Q ss_pred ceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeec------CCC--------Ccccc--eee----e----
Q 044557 5 SVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDC------NTF--------SSELD--QEF----L---- 58 (362)
Q Consensus 5 ~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~------~~~--------~~~~~--~~~----~---- 58 (362)
+.-..+|+.++.||.+.|.+|.|. +.+++|+|.|++..||.. ... +.+.+ .+. .
T Consensus 176 s~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~ 255 (481)
T KOG0300|consen 176 SLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEK 255 (481)
T ss_pred eeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccc
Confidence 345678999999999999999994 779999999999999972 110 00000 000 0
Q ss_pred cc-------ceeEEeecceeEEEEEc--CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccce
Q 044557 59 SN-------NNIVAVGKGAVKSLVVL--ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQ 129 (362)
Q Consensus 59 ~~-------~~~~~~~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (362)
.+ ...+..|.+.|.+..+. ++.++++++|.+..+||++.++...
T Consensus 256 sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~--------------------------- 308 (481)
T KOG0300|consen 256 SDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN--------------------------- 308 (481)
T ss_pred cCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec---------------------------
Confidence 00 11122344555555443 4569999999999999998765321
Q ss_pred eeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce-EEEeeeccCcccEEEEEEcCCCcEEEEeCCCeE
Q 044557 130 IRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-CLESITNAHDDAINAVALSDDGDVYTGSADKKI 208 (362)
Q Consensus 130 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i 208 (362)
.+-+|....+-++-+|..+++++.+.|.+.|+||.+..- .+..+ .+|++.|+++.|.-+.++++|+.|.+|
T Consensus 309 -------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF-QGHtdtVTS~vF~~dd~vVSgSDDrTv 380 (481)
T KOG0300|consen 309 -------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF-QGHTDTVTSVVFNTDDRVVSGSDDRTV 380 (481)
T ss_pred -------cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee-cccccceeEEEEecCCceeecCCCceE
Confidence 112566677778889999999999999999999998532 34444 589999999999999999999999999
Q ss_pred EEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-
Q 044557 209 KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD- 287 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 287 (362)
++||+.+.... +.++ ....+++.++++..+..|+.--....||+||+....-....-..-.+|..-|.|++|..+
T Consensus 381 KvWdLrNMRsp---lATI-RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 381 KVWDLRNMRSP---LATI-RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred EEeeeccccCc---ceee-ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 99999865422 2222 246789999999877788887778899999997543221111234588888999999755
Q ss_pred ---eEEEeeCCCcEEEeeCC
Q 044557 288 ---LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 288 ---~~~s~s~D~~i~~W~~~ 304 (362)
-+.+++-|+.+.-|++.
T Consensus 457 p~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred cccccccccccceeeeeEec
Confidence 48899999999999864
No 110
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8e-24 Score=192.58 Aligned_cols=230 Identities=17% Similarity=0.252 Sum_probs=179.3
Q ss_pred EcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-
Q 044557 76 VLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE- 154 (362)
Q Consensus 76 ~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~- 154 (362)
+..+.|++++..|.|.+||+..... +.....+..|...+.++.|++..
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~r-------------------------------nk~l~~f~EH~Rs~~~ldfh~tep 146 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIR-------------------------------NKLLTVFNEHERSANKLDFHSTEP 146 (839)
T ss_pred chhhhheeecCCCcEEEEecCcccc-------------------------------chhhhHhhhhccceeeeeeccCCc
Confidence 3456799999999999999964210 00111234688999999998865
Q ss_pred CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccc
Q 044557 155 TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
.+|++||+||+|++||++..+...++. .....|+.|+|+|.. .|+++...|.+.+||+.... .....+..|.++
T Consensus 147 ~iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---r~~~k~~AH~Gp 222 (839)
T KOG0269|consen 147 NILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---RCEKKLTAHNGP 222 (839)
T ss_pred cEEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEecCCceEEEeeccCch---hHHHHhhcccCc
Confidence 689999999999999999888776664 567889999999754 48899999999999997543 345567789999
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEee--CCCcEEEeeCCCCc
Q 044557 233 INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGS--ADKTIRIWRGIDRN 307 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s--~D~~i~~W~~~~~~ 307 (362)
|.++.|+|++.+|||||.|++|++||..+.+..... ++. -..+|.++.|-|. +|+++| .|-.|++||+ .+.
T Consensus 223 V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~--tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv-rRP 298 (839)
T KOG0269|consen 223 VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH--TIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV-RRP 298 (839)
T ss_pred eEEEeecCCCceeeecCCCccEEEEeccCCCcccee--EEe-ecceeeeeeeccCccchhhhhhccccceEEEEee-ccc
Confidence 999999999999999999999999998754433221 111 2456788888664 677776 5889999996 567
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
+-+.+++..|.+.++.++|.. .+...|.|+|.||+|.
T Consensus 299 YIP~~t~~eH~~~vt~i~W~~--------~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 299 YIPYATFLEHTDSVTGIAWDS--------GDRINLWSCSKDGTVL 335 (839)
T ss_pred cccceeeeccCccccceeccC--------CCceeeEeecCccHHH
Confidence 888889999999999998843 2234688999999863
No 111
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2.5e-24 Score=177.88 Aligned_cols=245 Identities=18% Similarity=0.274 Sum_probs=184.2
Q ss_pred ceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCcee
Q 044557 69 GAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVS 146 (362)
Q Consensus 69 ~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 146 (362)
..+.|..+++| +|++++.||-|.+|+..++....- +. ..-...+.-+.++|.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD----Lk----------------------YQAqd~fMMmd~aVl 267 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD----LK----------------------YQAQDNFMMMDDAVL 267 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhh----hh----------------------hhhhcceeecccceE
Confidence 45667777765 699999999999999876542110 00 000112234678999
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
|+.|+.|...||+|+.||.|++|.++++.|++.+..+|+..|+++.|+.|+. +++++-|.++++--+.+++ +.+.
T Consensus 268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK----~LKE 343 (508)
T KOG0275|consen 268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK----CLKE 343 (508)
T ss_pred EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch----hHHH
Confidence 9999999999999999999999999999999999999999999999998875 9999999999999887764 5667
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE---eCCeEEEeeCCCcEEEee
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV---VSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~~~~s~s~D~~i~~W~ 302 (362)
+.+|.+.|+...|++||.++++++.||+|++|+..+.++.. .. ...+..-.|..+.. +++.++.+-..++|.+-+
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~-Tf-k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS-TF-KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhh-hc-cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 88999999999999999999999999999999987654321 11 11223345666554 356888888888998887
Q ss_pred CCCCceeeeeEec-CC--CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GIDRNYTCLAVLE-GH--RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~~~~~~~~~l~-~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.. ++.+..+. |. .+...++..+| .|.++...+.|+.+..+.+.
T Consensus 422 ~q---GQvVrsfsSGkREgGdFi~~~lSp---------kGewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 422 MQ---GQVVRSFSSGKREGGDFINAILSP---------KGEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred cc---ceEEeeeccCCccCCceEEEEecC---------CCcEEEEEccCcEEEEEEee
Confidence 42 34455443 22 22333444444 44578888999999888763
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-22 Score=157.66 Aligned_cols=249 Identities=21% Similarity=0.295 Sum_probs=183.0
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-----e-eE
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-----K-LF 82 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~-l~ 82 (362)
+...-+.|.+.|.|.+|+ |++|+|||.|.+|++-.++..+... .+....+..|.+.++.+.+..+ . |+
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~----~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA----TGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc----cCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 334456799999999995 8999999999999998776543221 1122334557788888877543 2 44
Q ss_pred EEecCCcEEEE--ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 83 SAHQDHKIRVW--KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 83 s~~~dg~i~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+++ -|..++| |...+.+ ...+.+|++.|.++ ++-++-++++|
T Consensus 157 s~g-agdc~iy~tdc~~g~~----------------------------------~~a~sghtghilal-yswn~~m~~sg 200 (350)
T KOG0641|consen 157 SAG-AGDCKIYITDCGRGQG----------------------------------FHALSGHTGHILAL-YSWNGAMFASG 200 (350)
T ss_pred ecC-CCcceEEEeecCCCCc----------------------------------ceeecCCcccEEEE-EEecCcEEEcc
Confidence 443 3444444 3322211 11234688888877 45567899999
Q ss_pred ECCCcEEEEECCCceEEEeeecc------CcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccce
Q 044557 161 SWDRTIKIWRTSDFKCLESITNA------HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~------h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
++|++||+||++-..+++.+... ...+|.+++..|.|+ +++|-.|..-.+||+..+.+.+. +..|...|
T Consensus 201 sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~----f~phsadi 276 (350)
T KOG0641|consen 201 SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR----FHPHSADI 276 (350)
T ss_pred CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee----eCCCccce
Confidence 99999999999988888876432 235799999999998 67888999999999987765443 45689999
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 234 NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 234 ~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
.++.|+|.-.++++++.|..|++-|++..-.....+.....|...+..+.|.+. .+++.|.|+++.+|-.
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 999999999999999999999999987532222223344568888888888764 5899999999999963
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.2e-23 Score=180.32 Aligned_cols=282 Identities=20% Similarity=0.367 Sum_probs=204.7
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRV 92 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~ 92 (362)
.|..-|.++.++ .++++||+. |-|||||+............ .++. ....+++..+.+ +.|++|+.-.++.+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqL---dcl~-rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQL---DCLN-RDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccc---cccC-cccceeeeEecCCCceEEeccccceeee
Confidence 478888888885 578999976 88999998754211111111 1110 123455555544 45999999999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
||+....+... ..++. -.-...+++.+||.++.++|..||.|.|||+.
T Consensus 492 WDLAapTprik-----aelts---------------------------sapaCyALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 492 WDLAAPTPRIK-----AELTS---------------------------SAPACYALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred eeccCCCcchh-----hhcCC---------------------------cchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence 99975432110 00000 01124567889999999999999999999999
Q ss_pred CceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC
Q 044557 173 DFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD 251 (362)
Q Consensus 173 ~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d 251 (362)
+...++.+. +|++.+.||.++++|. |.+|+-|++||-||+..+...+. ......|.++.++|++.+|+.|=..
T Consensus 540 nq~~Vrqfq-GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hdF~SQIfSLg~cP~~dWlavGMen 613 (705)
T KOG0639|consen 540 NQTLVRQFQ-GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYCPTGDWLAVGMEN 613 (705)
T ss_pred cceeeeccc-CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh-----hhhhhhheecccCCCccceeeeccc
Confidence 999999886 8999999999999996 99999999999999988754321 1235679999999999999999999
Q ss_pred CcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 252 RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 252 ~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
+.+-+-.....+. ..+.-|...|+++.|. +..+++.+.|.-+..|+.- -+..+-.. ..++.|.++.++.+
T Consensus 614 s~vevlh~skp~k-----yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP--yGasiFqs-kE~SsVlsCDIS~d 685 (705)
T KOG0639|consen 614 SNVEVLHTSKPEK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP--YGASIFQS-KESSSVLSCDISFD 685 (705)
T ss_pred CcEEEEecCCccc-----eeecccccEEEEEEecccCceeeecCchhhhhhccCc--cccceeec-cccCcceeeeeccC
Confidence 9887776654321 1244588889999885 6799999999999999842 22222222 35667888776543
Q ss_pred CCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 330 NDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 330 ~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+||++||.|....||.+-|
T Consensus 686 ---------dkyIVTGSGdkkATVYeV~Y 705 (705)
T KOG0639|consen 686 ---------DKYIVTGSGDKKATVYEVIY 705 (705)
T ss_pred ---------ceEEEecCCCcceEEEEEeC
Confidence 36899999999999998754
No 114
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-23 Score=179.82 Aligned_cols=250 Identities=18% Similarity=0.277 Sum_probs=177.7
Q ss_pred CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhcccccccee-eeeeeeEEeeecCceeEEEEecCC-C
Q 044557 78 ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQI-RRHKTCTWVHHVDAVSALALTKDE-T 155 (362)
Q Consensus 78 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~-~ 155 (362)
+++++.|+.|..|.+||+.-.....+.+.- ... .+..+. ...+.....+|++.|.+++++.+- +
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L-Gs~-------------~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n 257 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTL-GSK-------------ASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN 257 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceee-chh-------------hhhhhhhhcccccccccchHHHHHHHhccccce
Confidence 467999999999999998754432221111 000 000000 011222335799999999998765 5
Q ss_pred EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccce
Q 044557 156 LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
+||+||.|.+|++||+.++++...+. .|...|.++.|+|... +++|+.|++|++.|........... ...+.|
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w----k~~g~V 332 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW----KFDGEV 332 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE----Eeccce
Confidence 89999999999999999999988876 6899999999998653 8899999999999988532221111 235678
Q ss_pred eEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCeEEEeeCCCcEEEeeCCCCcee
Q 044557 234 NALALSCDGS-VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDLVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 234 ~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
-.++|.|... .++++..||+++-+|++.... .+.+++.|.+.|.+++++ +.+++|+|.|+.|++|+......+
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~---~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK---PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCC---ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 8999998654 566778899999999998654 345677899999999885 569999999999999997544333
Q ss_pred eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 310 ~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.++.-.-..+...|.++.|+ ...+++.|+.-+.+||||+.
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~--------~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPD--------VAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccccccccccceeecccCCC--------cceEEEecCccceEEEeecc
Confidence 33211111223444444333 34578888888899999984
No 115
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.6e-23 Score=175.43 Aligned_cols=266 Identities=14% Similarity=0.220 Sum_probs=170.2
Q ss_pred EeecceeEEEEEcCce---eEEEecCCcEEEEecCCCCCCccc------ceeeeeccCCCchhhhhccccccceeeeee-
Q 044557 65 AVGKGAVKSLVVLADK---LFSAHQDHKIRVWKINNQEPDHQK------YTRLATLPTLGDRAIKLLMPKNHVQIRRHK- 134 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~~---l~s~~~dg~i~~w~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 134 (362)
..|...|.+++-.++. +++|+.||.|++||+...+..... +..+... .+. ......+..+..+...
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~---~~~-~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVT---QTS-FFTVGDDKTVKQWKIDG 138 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEec---ccc-eEEecCCcceeeeeccC
Confidence 4566777777766654 899999999999999754321100 0000000 000 0000000001111100
Q ss_pred -eeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEE
Q 044557 135 -TCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVW 211 (362)
Q Consensus 135 -~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw 211 (362)
......-...+..+.-+..+..++|||+ .|.|||.+...++..+.- -.+.|.++.|+|-.. |++++.|+.|.+|
T Consensus 139 ~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 139 PPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred CcceeeeccccccccccccccccccccCc--eeeecccccCCccceeec-CCCceeEEecCCCcchheeeeccCCceEEE
Confidence 0000011223344444444555666553 466666655555555543 345788999999775 6788899999999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eE
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LV 289 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~ 289 (362)
|+..+.+.++++..+ .-+.|+|+|.+--+.+|+.|..++.||++.-.. .+....+|...|.+++|+|. -+
T Consensus 216 D~R~~~Pl~KVi~~m-----RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~---p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 216 DLRQASPLKKVILTM-----RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR---PLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ecccCCccceeeeec-----cccceecCccccceeeccccccceehhhhhhcc---cchhhcccceeEEEeccCCCcchh
Confidence 999988777665433 346799999888888999999999999986443 34567899999999999864 79
Q ss_pred EEeeCCCcEEEeeCCCCceeeeeEe-cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 290 CSGSADKTIRIWRGIDRNYTCLAVL-EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 290 ~s~s~D~~i~~W~~~~~~~~~~~~l-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+|||-|++||||....... ..++ ..-...|.++.++.|. ++|+|||+|+.||+|.-
T Consensus 288 vsgsyDksIRIf~~~~~~S--RdiYhtkRMq~V~~Vk~S~Ds---------kyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHS--RDIYHTKRMQHVFCVKYSMDS---------KYIISGSDDGNVRLWKA 344 (433)
T ss_pred ccccccceEEEeecCCCcc--hhhhhHhhhheeeEEEEeccc---------cEEEecCCCcceeeeec
Confidence 9999999999998643221 1111 1124468899987653 57999999999999975
No 116
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1.6e-22 Score=190.67 Aligned_cols=256 Identities=21% Similarity=0.312 Sum_probs=185.7
Q ss_pred ceeEEEEEcCce--eEEEe--cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 69 GAVKSLVVLADK--LFSAH--QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 69 ~~v~~i~~~~~~--l~s~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
..+.++++.++. +++|+ .|+.+++|+.+.-....... . .......++...|.+.
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~--~--------------------~~l~k~l~~m~~h~~s 71 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEK--N--------------------ENLPKHLCTMDDHDGS 71 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhh--h--------------------cccchhheeeccccCc
Confidence 357777777764 88888 89999999875322110000 0 0011223455679999
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCC------------------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSD------------------FKCLESITNAHDDAINAVALSDDGD-VYTGSAD 205 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~------------------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d 205 (362)
|.|+.|+|||++||+||+|+.|.||.... +++...+ .+|...|..++|+|++. +++++.|
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~D 150 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLD 150 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccCCCccEEEEeccc
Confidence 99999999999999999999999998762 2233334 47999999999999987 7899999
Q ss_pred CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc------cee
Q 044557 206 KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT------KSI 279 (362)
Q Consensus 206 g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~------~~v 279 (362)
++|.||+..+. ..+..+.+|...|..+.|.|-|+|+++-+.|++|++|...+-. +...+.++. ...
T Consensus 151 nsViiwn~~tF----~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~----i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 151 NSVIIWNAKTF----ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG----IEKSITKPFEESPLTTFF 222 (942)
T ss_pred ceEEEEccccc----eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce----eeEeeccchhhCCCccee
Confidence 99999998765 3566788999999999999999999999999999999965421 222223222 234
Q ss_pred EEEEEeCC--eEEEee----CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCC-C------Cc-eEEEec
Q 044557 280 LCMAVVSD--LVCSGS----ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS-D------TS-YLVCSG 345 (362)
Q Consensus 280 ~~~~~~~~--~~~s~s----~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~-~------~~-~~l~s~ 345 (362)
+.+.|+|+ +|++.- .-.++.|-+ ..++++-..|-||..++.++.|+|.-..-... . .. ..+|+|
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~Iie--R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIE--RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEe--cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 66777765 776643 234566665 34677778899999999999999853211101 0 11 279999
Q ss_pred CCCCcEEEEecc
Q 044557 346 SLDCDIKVWQIS 357 (362)
Q Consensus 346 s~D~~i~~W~~~ 357 (362)
|.|++|-||...
T Consensus 301 SqDrSlSVW~T~ 312 (942)
T KOG0973|consen 301 SQDRSLSVWNTA 312 (942)
T ss_pred cCCccEEEEecC
Confidence 999999999984
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=173.04 Aligned_cols=201 Identities=26% Similarity=0.397 Sum_probs=159.8
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCC---C
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPG---N 217 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~---~ 217 (362)
.+.|.|++-+|+|.+|+.|+..+.|++|.+.++..+..+ .+|.++|+++.|+.||. ++||+.||.|.+|.+.+- .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 357899999999999999989999999999999998877 58999999999999987 899999999999976431 1
Q ss_pred --CcceeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEE
Q 044557 218 --KKHSLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCS 291 (362)
Q Consensus 218 --~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s 291 (362)
........+..|.-+|+.+.+.+. ..+|+|+|.|.++++||+..+. +..... -...+.+++.++ ..+..
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--LLlti~---fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--LLLTIT---FPSSIKAVALDPAERVVYI 234 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce--eeEEEe---cCCcceeEEEcccccEEEe
Confidence 112234556789999999988764 5799999999999999997642 222222 234577888765 37889
Q ss_pred eeCCCcEEEeeCCCC--------------ceeeeeEecCCCC--cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 292 GSADKTIRIWRGIDR--------------NYTCLAVLEGHRG--PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~--------------~~~~~~~l~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|++||.|-+-.+..- ....+..+.||++ +|+|++.+-|+ .+|+||+.||++.|||
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg---------tlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG---------TLLLSGDEDGKVCVWD 305 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc---------cEEEeeCCCCCEEEEe
Confidence 999999877654211 1234567899999 99999997654 5799999999999999
Q ss_pred cc
Q 044557 356 IS 357 (362)
Q Consensus 356 ~~ 357 (362)
+.
T Consensus 306 i~ 307 (476)
T KOG0646|consen 306 IY 307 (476)
T ss_pred cc
Confidence 83
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=6.8e-22 Score=161.99 Aligned_cols=241 Identities=19% Similarity=0.257 Sum_probs=170.4
Q ss_pred cceeEEEEEcC--ce-eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 68 KGAVKSLVVLA--DK-LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 68 ~~~v~~i~~~~--~~-l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
+..|+.+.+++ +. ++.+++|++||+|+++......+ .....|.++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--------------------------------ka~~~~~~P 74 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--------------------------------KAQQSHDGP 74 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc--------------------------------hhhhccCCC
Confidence 45677888876 23 55889999999999975321000 011357889
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc---EEEEeCCCeEEEEeCCCCCCcce
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD---VYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~---~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
|.+++|+.||..+++|+.|+.+++||+.+++... +. .|..+|..+.|-+... |+||+.|++||.||.....+..+
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~-v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ-VA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT 152 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEccCCCeee-ee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee
Confidence 9999999999999999999999999999996544 43 6999999999876542 78999999999999986654332
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEE
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIR 299 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~ 299 (362)
+ .-+..|.++.. -...++.+..++.|.+|+++++..+...+..- -.-.++|++.. .+..+-||-.|.+-
T Consensus 153 ~-----~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 153 L-----QLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESP--LKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred e-----eccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCc--ccceeeEEEEEecCCceEeeeecceEE
Confidence 2 12334544433 34578888999999999997654332221110 12235677653 44679999999999
Q ss_pred EeeCCCCceeeeeEecCCCC---------cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 300 IWRGIDRNYTCLAVLEGHRG---------PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
+-.+..+..+.--+++.|.. +|++++|+|... .|+++|.||++-+||-+-.+
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg---------tlvTaGsDGtf~FWDkdar~ 284 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG---------TLVTAGSDGTFSFWDKDART 284 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc---------eEEEecCCceEEEecchhhh
Confidence 98765532222334555653 688899988543 58999999999999975433
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.9e-22 Score=165.68 Aligned_cols=195 Identities=22% Similarity=0.459 Sum_probs=154.3
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcce
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
.+.|..+.|+|.++.|++++|||.+++||+........+ .|..++.+++|.++.++++|+.||.|+++|+.++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-- 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED-- 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCCceEEEeccCceEEEEEecCCcce--
Confidence 467899999999999999999999999999887655555 4888999999999999999999999999999887532
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEe
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIW 301 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W 301 (362)
.+..|..+|.+|.+++....+++||.|++|++||.+... ....+. ..+.|.|+...++.|+.|..|+.|.+|
T Consensus 89 ---~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~----~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iy 160 (323)
T KOG1036|consen 89 ---QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV----VVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIY 160 (323)
T ss_pred ---eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc----cccccc-cCceEEEEeccCCEEEEeecCceEEEE
Confidence 345799999999999988999999999999999987522 122222 345899999999999999999999999
Q ss_pred eCCCCc-------------eeeee---------------------------------EecCCCC---------cEEEEEe
Q 044557 302 RGIDRN-------------YTCLA---------------------------------VLEGHRG---------PVKCLAA 326 (362)
Q Consensus 302 ~~~~~~-------------~~~~~---------------------------------~l~~h~~---------~v~~~~~ 326 (362)
|+..-. ..++. .++.|.. +|++++|
T Consensus 161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 853100 00000 1233432 6788888
Q ss_pred eecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 327 AIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 327 ~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+|-. ..+|||+.||.|.+||+.
T Consensus 241 hp~~---------~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 241 HPIH---------GTFATGGSDGIVNIWDLF 262 (323)
T ss_pred cccc---------ceEEecCCCceEEEccCc
Confidence 7642 359999999999999995
No 120
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=172.19 Aligned_cols=242 Identities=18% Similarity=0.319 Sum_probs=176.6
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~ 86 (362)
++.+|.|-.+.|+++.++ ++++++++.|+.+++|++.... .. ..+..|...|+++.+.. ..+++++.
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r--~~-------~TLsGHtdkVt~ak~~~~~~~vVsgs~ 281 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR--LR-------HTLSGHTDKVTAAKFKLSHSRVVSGSA 281 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh--hh-------hhhcccccceeeehhhccccceeeccc
Confidence 677899999999999995 7799999999999999987532 11 12234566777776543 34899999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
|.+|+.||+......... +| ...+..+..+ ...+++|=.|++|
T Consensus 282 DRtiK~WDl~k~~C~kt~------l~-----------------------------~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 282 DRTIKLWDLQKAYCSKTV------LP-----------------------------GSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred cchhhhhhhhhhheeccc------cc-----------------------------cccccceEec--ceeeeecccccce
Confidence 999999999764321110 00 0112223322 4467788899999
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
|+||.+...+...+. -.+.|+++..++++. +++++.|.++++.|+.+.+..+.+...-..-....+.+.|||++.|+
T Consensus 325 RfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv 402 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV 402 (459)
T ss_pred EEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCcee
Confidence 999999988877764 335899999999996 89999999999999987654433322111123348899999999999
Q ss_pred EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEee
Q 044557 246 YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWR 302 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~ 302 (362)
++||.||.|++|++.+++.+. .....+....|++++|++ ..+++++.++.+.+|.
T Consensus 403 aAGS~dgsv~iW~v~tgKlE~--~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTGKLEK--VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeccCCCcEEEEEccCceEEE--EeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999998754322 222222233699999964 5899999999999994
No 121
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.2e-21 Score=172.07 Aligned_cols=270 Identities=19% Similarity=0.258 Sum_probs=194.2
Q ss_pred ccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEee-cceeEEEEEc-CceeEEEecCCcEEEEe
Q 044557 19 NSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG-KGAVKSLVVL-ADKLFSAHQDHKIRVWK 94 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~-~~~l~s~~~dg~i~~w~ 94 (362)
..+|.+++++ ++.||.+-.||.|.+|++...-. ...++..+ ...+.++++. +.+|++.+.+|+|.-||
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~--------~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF--------LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWD 96 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCce--------eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEe
Confidence 5689999995 67899999999999999865321 01122223 3578888888 66899999999999999
Q ss_pred cCCCCCCcc------cceeeeeccCCCchhhhhccccccceeeee--eee----EEeeecCceeEEEEecCCCEEEEEEC
Q 044557 95 INNQEPDHQ------KYTRLATLPTLGDRAIKLLMPKNHVQIRRH--KTC----TWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 95 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+.+.++... .+-.+...|......+. +.++....... ..- .+...++++.+++|+|++..+++|+.
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig--cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIG--CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEee--cCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 977654211 11111112211111111 00110000000 000 11224578999999999999999999
Q ss_pred CCcEEEEECCCceEEEe-------eeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 163 DRTIKIWRTSDFKCLES-------ITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~-------~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
||.|++||...+..+.. +......-|+++.|-.++.+++|..-|+|++||...+. ++.....|.+.|.+
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT----LiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT----LIQSHSCHDADVLA 250 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc----hhhhhhhhhcceeE
Confidence 99999999998876552 11113345899999999999999999999999988764 45556679999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEee
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~ 302 (362)
++.++++.+++++|.|+.|..|.......++........|...|.++++.++.+++|+.|.++.+=.
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICS 317 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcc
Confidence 9999999999999999999999887655555566667789999999999989999999998876653
No 122
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=2.5e-22 Score=161.43 Aligned_cols=199 Identities=23% Similarity=0.376 Sum_probs=159.3
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEe-eeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLES-ITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSP 215 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~ 215 (362)
.+|...+.+++|+.+|..|++|+.|+++++|+++..+.... ...+|.+.|..++|.|.. .+++++.|++|++||...
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 46888999999999999999999999999999987754333 235788899999998765 388999999999999998
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC-----------------------------C--
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD-----------------------------G-- 264 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~-----------------------------~-- 264 (362)
+++..... ....-..+.|+|+|.+++.++.|..|.+.|.++.. +
T Consensus 97 ~k~~~~i~-----~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 97 GKCTARIE-----TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred CcEEEEee-----ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence 86554332 22333458899999999999999999999864311 0
Q ss_pred ------cEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCC
Q 044557 265 ------NILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSS 336 (362)
Q Consensus 265 ------~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~ 336 (362)
.+..+..+++|...+.|+.|+|+ ++|+||.|..+-+||.. ...|+..+..|.=+|..++|+-++
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~--ELiC~R~isRldwpVRTlSFS~dg------ 243 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD--ELICERCISRLDWPVRTLSFSHDG------ 243 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh--HhhhheeeccccCceEEEEeccCc------
Confidence 11122345679888899999865 99999999999999963 467888899999999999998654
Q ss_pred CCceEEEecCCCCcEEE
Q 044557 337 DTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 337 ~~~~~l~s~s~D~~i~~ 353 (362)
++|||||.|.-|-|
T Consensus 244 ---~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 244 ---RMLASASEDHFIDI 257 (313)
T ss_pred ---ceeeccCccceEEe
Confidence 68999999988743
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-20 Score=175.53 Aligned_cols=265 Identities=17% Similarity=0.270 Sum_probs=195.8
Q ss_pred ccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEE
Q 044557 16 KGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVW 93 (362)
Q Consensus 16 ~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w 93 (362)
.+|+..-+.|++ +|++|+||+.||.||+|+......+.+ .+..+...+.++....+.+++++.+++|..|
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~--------ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE--------TIDISGELVSSIACYSNHFLTGSEQNTVLRY 81 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc--------hhhccCceeEEEeecccceEEeeccceEEEe
Confidence 368888999998 488999999999999999765421111 1111345677777778899999999999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 173 (362)
.....+... -+ -..+-++++++|+.+|+++|.||.|-.|++-++.+
T Consensus 82 ~fps~~~~~----iL------------------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 82 KFPSGEEDT----IL------------------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred eCCCCCccc----ee------------------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccc
Confidence 887654210 00 01234678999999999999999999999999988
Q ss_pred ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc---c-ccceeEEEEecCCCEEEEE
Q 044557 174 FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER---H-NSGINALALSCDGSVLYSG 248 (362)
Q Consensus 174 ~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---h-~~~v~~i~~s~~~~~l~s~ 248 (362)
......+ .+|..+|.++.|+|++. +++.+.||+|++|+++++.....+....+. - ...++.++|+|+|..++..
T Consensus 128 ~s~~~~l-rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 128 SSQEKVL-RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred cchheee-cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 7766655 48999999999999998 677889999999999987654444322221 1 3456788999999999999
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEe
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~ 326 (362)
+.|+.|++|+...-+....+ ..+.+...+.++.|+| .+||+++.||.|.||+... . .. ..-...|.+++|
T Consensus 207 ~~d~~Vkvy~r~~we~~f~L--r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t--~---~~-~~~~~~Vc~~aw 278 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKL--RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT--H---ER-HEFKRAVCCEAW 278 (933)
T ss_pred ccCCeEEEEccCCceeheee--cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc--c---hh-ccccceeEEEec
Confidence 99999999998754332221 1222334477788875 4999999999999999642 1 01 223457888888
Q ss_pred eecCC
Q 044557 327 AIDND 331 (362)
Q Consensus 327 ~~~~~ 331 (362)
.|+.+
T Consensus 279 ~p~~n 283 (933)
T KOG1274|consen 279 KPNAN 283 (933)
T ss_pred CCCCC
Confidence 87654
No 124
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=7.9e-22 Score=176.15 Aligned_cols=281 Identities=21% Similarity=0.279 Sum_probs=192.0
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCccccee
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 107 (362)
..|+.+..||.|.++|........++. .......|.+.|..+.+.+. .|++++.|.+++.||++......
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~---~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G----- 136 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEER---QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG----- 136 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhh---hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec-----
Confidence 579999999999999976533221110 00112346677777766653 49999999999999997643210
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEECCCcEEEEECCCceE--E-------
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKC--L------- 177 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~--~------- 177 (362)
...+.+|...|.+++|.|... .|++|+.||.|.|||++.... +
T Consensus 137 ---------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 137 ---------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred ---------------------------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence 113468999999999999764 799999999999999863220 0
Q ss_pred ------------------EeeeccCcc----cEEEEEEcCCCcEEEEeC-CCeEEEEeCCCCCCccee----ehhhhcc-
Q 044557 178 ------------------ESITNAHDD----AINAVALSDDGDVYTGSA-DKKIKVWRRSPGNKKHSL----VDVLERH- 229 (362)
Q Consensus 178 ------------------~~~~~~h~~----~v~~v~~~~~~~~~s~~~-dg~i~iw~~~~~~~~~~~----~~~~~~h- 229 (362)
+.. +++.. .|+.+.|-++..|++++. |+.||+||+......... ...+..|
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s 268 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS 268 (720)
T ss_pred hccccCCCCCCchhhcccccc-ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence 000 12322 355566666677888776 999999999764321111 1112223
Q ss_pred --ccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce---eE-EEEEeCCeEEEeeCCCcEEEeeC
Q 044557 230 --NSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS---IL-CMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 230 --~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~---v~-~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
.-++.++.....|.+|++.+.|+.|++|++...... .+..+.++... +. ++.+.+.++++|+.|....+|.+
T Consensus 269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s--P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~v 346 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS--PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVV 346 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC--chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeee
Confidence 346777777778899999999999999999764432 23334444332 21 23344559999999999999986
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.. -......+.||.-.|+++++.|... .. ++++|+|-++++|++.
T Consensus 347 s~-~e~~~~~l~Ght~eVt~V~w~pS~~-------t~-v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 347 SS-PEAPPALLLGHTREVTTVRWLPSAT-------TP-VATCSDDFRVKIWRLS 391 (720)
T ss_pred cC-ccCChhhhhCcceEEEEEeeccccC-------CC-ceeeccCcceEEEecc
Confidence 43 2344567889999999999987643 22 6678999999999994
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.6e-22 Score=182.80 Aligned_cols=227 Identities=17% Similarity=0.265 Sum_probs=169.0
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc---CceeEEEecCCcEEEEecCCCCCCccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL---ADKLFSAHQDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~ 104 (362)
+.++|||++..|.|-+||+........ ..+...|+..+.++.+. ++.|++|++||+|++||++.....
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~------l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~--- 169 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKL------LTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK--- 169 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchh------hhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc---
Confidence 478999999999999999875321111 00122345566666654 567999999999999999764321
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEECCCcEEEEECCCceE-EEeeec
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFKC-LESITN 182 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~ 182 (362)
.++.+..+.|+.++|+|. +..|+++.+.|.+++||++..+. ...+ .
T Consensus 170 -------------------------------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~-~ 217 (839)
T KOG0269|consen 170 -------------------------------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL-T 217 (839)
T ss_pred -------------------------------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh-h
Confidence 112234567899999884 57899999999999999998754 3444 4
Q ss_pred cCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC-EEEEEcC--CCcEEEEe
Q 044557 183 AHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGAC--DRSIIVWE 258 (362)
Q Consensus 183 ~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~--d~~i~~wd 258 (362)
+|.++|.++.|+|++. |+||+.|+.|+||+..+..... ..++ ....+|..+.|-|+.. +|++++. |-.|++||
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~--~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP--KHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc--eeEE-eecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 8999999999999876 8899999999999998654322 1122 1357899999999765 5666654 77899999
Q ss_pred ccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEe
Q 044557 259 KEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIW 301 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W 301 (362)
++. ++.....+..|...++.++|.. ..+.++|.|++|..-
T Consensus 295 vrR---PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 295 VRR---PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred ecc---ccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 974 3445667788999999999953 479999999998644
No 126
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.7e-20 Score=151.85 Aligned_cols=239 Identities=19% Similarity=0.221 Sum_probs=172.4
Q ss_pred cceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
.+.+.++.+.. +.+++++.|.++++||...+.... ++..+...+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~----------------------------------ti~skkyG~ 59 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK----------------------------------TINSKKYGV 59 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee----------------------------------Eeecccccc
Confidence 35677887764 458888999999999987654211 111233445
Q ss_pred eEEEEecCCCEEEEEE--CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee
Q 044557 146 SALALTKDETLLYSVS--WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
..+.|....+.++.++ .|.+||.-++.+.+.++.+. +|...|.+++.+|-+. +++++.|++|++||+...++..-+
T Consensus 60 ~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 60 DLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred cEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 5666655555555555 48999999999999999885 8999999999999876 999999999999999865433221
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec-CccceeEEEEEeCC--eEEEeeCCCcEE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR-GHTKSILCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~s~s~D~~i~ 299 (362)
+..+-..++|.|+|-.+|++...+.|++||++..+......-.+. +-......+.|+++ .++-+...+.+.
T Consensus 139 ------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 139 ------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIY 212 (311)
T ss_pred ------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence 222334578999999999999888999999987633322222222 34556788889865 777777778899
Q ss_pred EeeCCCCceeeeeEecCCCCcE---EEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPV---KCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v---~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+-|+.. +....++.+|...- -...|+|++ +++.+|+.||+|.+|++..
T Consensus 213 ~lDAf~--G~~~~tfs~~~~~~~~~~~a~ftPds---------~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 213 LLDAFD--GTVKSTFSGYPNAGNLPLSATFTPDS---------KFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EEEccC--CcEeeeEeeccCCCCcceeEEECCCC---------cEEEEecCCCcEEEEEcCC
Confidence 988654 34566776665533 445566554 5789999999999999854
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=161.25 Aligned_cols=206 Identities=20% Similarity=0.388 Sum_probs=147.4
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce-----EEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEE
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-----CLESITNAHDDAINAVALSDDGD--VYTGSADKKIK 209 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~ 209 (362)
.+.+|.+.|++++|+.||++||+++.|+.|++|+++++. +++.- -..+-.+.++|+||-+ ++++-...+++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 345799999999999999999999999999999998753 22211 1223457899999986 55666777999
Q ss_pred EEeCCCC---CCcceee-----hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEE
Q 044557 210 VWRRSPG---NKKHSLV-----DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC 281 (362)
Q Consensus 210 iw~~~~~---~~~~~~~-----~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~ 281 (362)
+|.+... ......+ .....|+.++..+-+..++.+|++++.|..|.+|++.. + .+..+......-..
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q----~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-Q----LLQSIDTNQSSNYD 233 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-c----eeeeeccccccccc
Confidence 9976432 2111111 12234677888888888999999999999999999872 2 23333322222223
Q ss_pred EEE--eCCeEEEeeCCCcEEEeeCC---CCce---eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 282 MAV--VSDLVCSGSADKTIRIWRGI---DRNY---TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 282 ~~~--~~~~~~s~s~D~~i~~W~~~---~~~~---~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
.+. .+.++++++----|++|... ...+ ..+-.|+||++.|..++|+++..+ ++|.|.||++||
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r---------~vtvSkDG~wri 304 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR---------AVTVSKDGKWRI 304 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce---------eEEEecCCcEEE
Confidence 334 45589988888889999631 1122 223468999999999999877543 889999999999
Q ss_pred Eeccc
Q 044557 354 WQISF 358 (362)
Q Consensus 354 W~~~~ 358 (362)
||.+.
T Consensus 305 wdtdV 309 (420)
T KOG2096|consen 305 WDTDV 309 (420)
T ss_pred eeccc
Confidence 99853
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.5e-23 Score=186.41 Aligned_cols=241 Identities=24% Similarity=0.436 Sum_probs=190.6
Q ss_pred EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCceeEEEecCCcEEEEecCCCCCCcccceee
Q 044557 31 FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKLFSAHQDHKIRVWKINNQEPDHQKYTRL 108 (362)
Q Consensus 31 ~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~ 108 (362)
+++....+-.+|+||..... .|...+.++.+ ....+++|+.|..+.+|.+......
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~~---------------~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i------- 63 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREFV---------------AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI------- 63 (825)
T ss_pred ccceeeeeeccccccchhhh---------------hhhhhhceeeeeccceeeccCCCceeeccccccCCchh-------
Confidence 34555666778888854211 12334444432 2345888999999999987432210
Q ss_pred eeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccE
Q 044557 109 ATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAI 188 (362)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v 188 (362)
-.+.+|...|.++.|+++..+|++|+.+|+|++||++..+.++++. +|...+
T Consensus 64 ---------------------------~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~ 115 (825)
T KOG0267|consen 64 ---------------------------TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNI 115 (825)
T ss_pred ---------------------------heeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCc
Confidence 0124689999999999999999999999999999999999888876 899999
Q ss_pred EEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEE
Q 044557 189 NAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNIL 267 (362)
Q Consensus 189 ~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 267 (362)
.++.|+|-+. +++|+.|+.+++||..... +.....+|...|..+.|+|+|+++++|+.|.++++||+..++
T Consensus 116 ~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G----c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---- 187 (825)
T KOG0267|consen 116 TSVDFHPYGEFFASGSTDTDLKIWDIRKKG----CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---- 187 (825)
T ss_pred ceeeeccceEEeccccccccceehhhhccC----ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc----
Confidence 9999999987 6789999999999987443 344556789999999999999999999999999999986533
Q ss_pred EEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCC
Q 044557 268 VVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 268 ~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~ 331 (362)
+...+++|.+.+..+.+.+. ++++||.|++|++|++ +++..+....+....|.+++|.+++.
T Consensus 188 ~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl--etfe~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 188 LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL--ETFEVISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred cccccccccccccccccCchhhhhccCCCCceeeeecc--ceeEEeeccCCccCCceeeeecCCce
Confidence 45678899999999998765 7899999999999995 35777777777788999999987654
No 129
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2e-21 Score=163.71 Aligned_cols=207 Identities=22% Similarity=0.406 Sum_probs=156.6
Q ss_pred eecCceeEEEEec--CCCEEEEEECCCcEEEEECCC----------------ceEEEeeeccCcccEEEEEEcC--CCcE
Q 044557 140 HHVDAVSALALTK--DETLLYSVSWDRTIKIWRTSD----------------FKCLESITNAHDDAINAVALSD--DGDV 199 (362)
Q Consensus 140 ~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~----------------~~~~~~~~~~h~~~v~~v~~~~--~~~~ 199 (362)
.|.+.+.-+...+ +..+.++-++.|.|.||++.. .+++.++. +|...=..++||| .|.+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeeccccccccc
Confidence 3444444444443 445677778899999999853 12333443 6777778899998 5678
Q ss_pred EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce
Q 044557 200 YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS 278 (362)
Q Consensus 200 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~ 278 (362)
++|..-+.|++|...++.-.... ..+.+|...|-.+.|||. ...+++||.|++|+|||.+.......+. .+.|...
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~-~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~--~kAh~sD 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQ-RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS--TKAHNSD 304 (440)
T ss_pred ccCccccceEeeeeccCceeecC-ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE--eeccCCc
Confidence 99988899999988775421111 123459999999999995 4688999999999999999864433322 3789999
Q ss_pred eEEEEEeCC--eEEEeeCCCcEEEeeCCC-CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 279 ILCMAVVSD--LVCSGSADKTIRIWRGID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 279 v~~~~~~~~--~~~s~s~D~~i~~W~~~~-~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|.-++|+.+ +|++|+.||+++|||+.. ...++++.++-|+.+|+++.|+|.... .|+++|.|..|.|||
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s--------~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS--------VIAASGEDNQITIWD 376 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc--------eEEeccCCCcEEEEE
Confidence 999999754 899999999999999643 234678899999999999999987542 577888999999999
Q ss_pred ccc
Q 044557 356 ISF 358 (362)
Q Consensus 356 ~~~ 358 (362)
++.
T Consensus 377 lsv 379 (440)
T KOG0302|consen 377 LSV 379 (440)
T ss_pred eec
Confidence 964
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6e-23 Score=185.64 Aligned_cols=198 Identities=24% Similarity=0.438 Sum_probs=170.2
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~ 218 (362)
.|...+.++..-..++.+++|++|..+-+|.+....++..+. +|+.+|.++.|+++.. +++|+.+|+||+||++.+.
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk- 103 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK- 103 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhh-
Confidence 366677777776678899999999999999998887776654 8999999999998776 7789999999999998764
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADK 296 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~ 296 (362)
...++.+|...+.++.|+|-+.+.++|+.|..+.+||.+...+ ...+.+|...|.++.|+++ +++++++|.
T Consensus 104 ---~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc----~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 104 ---IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC----SHTYKSHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred ---hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc----eeeecCCcceeEEEeecCCCceeeccCCcc
Confidence 4557788999999999999999999999999999999985443 3456789999999999865 899999999
Q ss_pred cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 297 TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++++||. +.++.++.+.+|...|..+.|+|.. .++++||.|+++++||+.
T Consensus 177 tvki~d~--~agk~~~ef~~~e~~v~sle~hp~e---------~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 177 TVKIWDL--TAGKLSKEFKSHEGKVQSLEFHPLE---------VLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eeeeecc--cccccccccccccccccccccCchh---------hhhccCCCCceeeeeccc
Confidence 9999995 4466788999999999999987653 579999999999999997
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=7e-21 Score=160.39 Aligned_cols=252 Identities=17% Similarity=0.262 Sum_probs=172.6
Q ss_pred cccCccceeeeEec----CcEEEEecCCCeEEEeecCCCCccc-----ceeeeccc--eeEEeecceeEEEEEcC---ce
Q 044557 15 LKGHNSYVSSLALA----GKFLYTGSSDNEVRSWDCNTFSSEL-----DQEFLSNN--NIVAVGKGAVKSLVVLA---DK 80 (362)
Q Consensus 15 l~gH~~~V~~l~~~----~~~l~t~s~Dg~i~vWd~~~~~~~~-----~~~~~~~~--~~~~~~~~~v~~i~~~~---~~ 80 (362)
.-+|.+.|..+... ..++++=+..|.|+||++......+ ........ .....|.+....+.+++ ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34688888877763 3578888899999999975421110 00001111 11123445556676665 34
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYS 159 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s 159 (362)
|++|.--+.|++|...++.- ......+.+|+..|..++|+|.. .+|++
T Consensus 227 LlsGDc~~~I~lw~~~~g~W-------------------------------~vd~~Pf~gH~~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSW-------------------------------KVDQRPFTGHTKSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred cccCccccceEeeeeccCce-------------------------------eecCccccccccchhhhccCCccCceEEe
Confidence 77777778899997654321 00111234689999999999965 58999
Q ss_pred EECCCcEEEEECCCc---eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 160 VSWDRTIKIWRTSDF---KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~---~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
||.||+|+|||++.+ .++. .++|.+.|+-|.|+..-. |++|+.||+++|||+..-+.. +.+..++.|..+|++
T Consensus 276 cS~DgsIrIWDiRs~~~~~~~~--~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pIts 352 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPKKAAVS--TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITS 352 (440)
T ss_pred eecCceEEEEEecCCCccceeE--eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeE
Confidence 999999999999987 2333 368999999999997665 889999999999999865433 345567789999999
Q ss_pred EEEec-CCCEEEEEcCCCcEEEEeccCCCC---------------cEEEEEeecCccceeEEEEEe---CCeEEEeeCCC
Q 044557 236 LALSC-DGSVLYSGACDRSIIVWEKEEDDG---------------NILVVGALRGHTKSILCMAVV---SDLVCSGSADK 296 (362)
Q Consensus 236 i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~---------------~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D~ 296 (362)
|.|+| +...|+++|.|.+|.+||+.-... ..+++-...| .+.+..+.|. +.+++|.+.||
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEecccc
Confidence 99999 456888999999999999753211 0111111111 3446667775 56899999997
Q ss_pred cEEEee
Q 044557 297 TIRIWR 302 (362)
Q Consensus 297 ~i~~W~ 302 (362)
+.||+
T Consensus 432 -fnVfk 436 (440)
T KOG0302|consen 432 -FNVFK 436 (440)
T ss_pred -eeEEE
Confidence 45554
No 132
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=2.1e-21 Score=169.53 Aligned_cols=212 Identities=20% Similarity=0.315 Sum_probs=160.3
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce----EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEE
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK----CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVW 211 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw 211 (362)
.+.+|+..|.++++.|.|-.|++||-|-+|++||+.... ..+.++......|+++.|++.|. ++..+..-..+|+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 346788899999999999999999999999999987532 33444445566899999999886 7777888889999
Q ss_pred eCCCCCCccee---------ehhhhccccceeEEEEecCC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc--cee
Q 044557 212 RRSPGNKKHSL---------VDVLERHNSGINALALSCDG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT--KSI 279 (362)
Q Consensus 212 ~~~~~~~~~~~---------~~~~~~h~~~v~~i~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~--~~v 279 (362)
|.+... ...+ ....++|...+++.+|+|+. ..+++++.||++|+|++........++....... -.+
T Consensus 242 DRdG~~-~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 242 DRDGFE-IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred ccCCce-eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 875322 1111 12346799999999999976 4788999999999999987655555544433333 345
Q ss_pred EEEEEeCC--eEEEeeCCCcEEEeeCCCCce-eeeeEecCCCC--cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 280 LCMAVVSD--LVCSGSADKTIRIWRGIDRNY-TCLAVLEGHRG--PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 280 ~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~-~~~~~l~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
+.++|+++ .||+|..||.|.+|+.....- .....-.+|.. .|++++|+++++ +|+|=|.|.++|+|
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~---------~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN---------YLLSRGFDDTLKVW 391 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc---------hhhhccCCCceeee
Confidence 78888754 899999999999999532211 11233457877 999999987764 58899999999999
Q ss_pred eccc
Q 044557 355 QISF 358 (362)
Q Consensus 355 ~~~~ 358 (362)
|+..
T Consensus 392 DLrq 395 (641)
T KOG0772|consen 392 DLRQ 395 (641)
T ss_pred eccc
Confidence 9964
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.2e-20 Score=153.59 Aligned_cols=211 Identities=19% Similarity=0.353 Sum_probs=155.9
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCC----ceEEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEe
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD----FKCLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWR 212 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~----~~~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~ 212 (362)
+|.+-|.++.|++.|+.+|+|+.|++|+|||.++ +.+-..+. .|.+.|..|.|.+. |+ +++++.|++++||.
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 5778899999999999999999999999999643 34545554 79999999999654 45 78999999999996
Q ss_pred CCCCCCc-----ceeehhhhccccceeEEEEec--CCCEEEEEcCCCcEEEEeccCCCC--cEEEEE-------eecCcc
Q 044557 213 RSPGNKK-----HSLVDVLERHNSGINALALSC--DGSVLYSGACDRSIIVWEKEEDDG--NILVVG-------ALRGHT 276 (362)
Q Consensus 213 ~~~~~~~-----~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~-------~~~~h~ 276 (362)
-...... -.....+......|+.|.|+| -|-.|++++.||.+|+|+..+.-. ...+.. ....+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 4221111 111223445678899999999 477899999999999999754211 011111 112355
Q ss_pred ceeEEEEEeCC-----eEEEeeCC-----CcEEEeeCCC--CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEe
Q 044557 277 KSILCMAVVSD-----LVCSGSAD-----KTIRIWRGID--RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCS 344 (362)
Q Consensus 277 ~~v~~~~~~~~-----~~~s~s~D-----~~i~~W~~~~--~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 344 (362)
.+..|+.|++. +|+.|+.+ +.++||...+ ++...+.+|.+|..+|.+++|.|+-.+ .-++||+
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr-----~y~~lAv 244 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR-----SYHLLAV 244 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC-----ceeeEEE
Confidence 66778888643 67777765 4788997533 456667789999999999999998543 2368999
Q ss_pred cCCCCcEEEEecc
Q 044557 345 GSLDCDIKVWQIS 357 (362)
Q Consensus 345 ~s~D~~i~~W~~~ 357 (362)
|+.|| |+||++.
T Consensus 245 A~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 245 ATKDG-VRIFKVK 256 (361)
T ss_pred eecCc-EEEEEEe
Confidence 99999 9999985
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=8.1e-20 Score=149.47 Aligned_cols=263 Identities=19% Similarity=0.252 Sum_probs=176.8
Q ss_pred ceeEEeecceeEEEEEc---CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeE
Q 044557 61 NNIVAVGKGAVKSLVVL---ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCT 137 (362)
Q Consensus 61 ~~~~~~~~~~v~~i~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (362)
..+...|.+.|.++.+. +.++++|+.||.|.+||+++......... +.... +. +. ...
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k~~--------c~-------v~---~~h 96 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAKHK--------CI-------VA---KQH 96 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eehee--------ee-------cc---ccC
Confidence 44455566777777653 45799999999999999976432110000 00000 00 00 001
Q ss_pred EeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC---c-EEEEeCCCeEEEEe
Q 044557 138 WVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG---D-VYTGSADKKIKVWR 212 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~-~~s~~~dg~i~iw~ 212 (362)
...|...|.++.|-| |...|.++|.|.++++||.++.+....+. .++.|.+-+++|-. - +++|..|-.|++-|
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 135778888887766 56688899999999999999988766664 45678888888743 2 56777888999999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcEE-----------EEEeecCccceeE
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEEDDGNIL-----------VVGALRGHTKSIL 280 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~~-----------~~~~~~~h~~~v~ 280 (362)
+.++.. ...+.+|...|-++.|+|... .|++||.||.||+||++...+.+. .+.+-..|.+.|.
T Consensus 175 i~SGs~----sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 175 IASGSF----SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred ccCCcc----eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence 998854 456689999999999999766 577999999999999875433222 1223346788899
Q ss_pred EEEEeCC--eEEEeeCCCcEEEeeCCCCceeee---------------eEecCCCCcEEEEEeeecCCccCCCCCceEEE
Q 044557 281 CMAVVSD--LVCSGSADKTIRIWRGIDRNYTCL---------------AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343 (362)
Q Consensus 281 ~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~---------------~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 343 (362)
.++|..+ ++++.+.|..+++|+.......+. ..-.+|.+.+.- . .++++-.|.
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~---~-------p~~~~lall 320 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVL---F-------PNDGSLALL 320 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEE---E-------ecCCeEEEE
Confidence 9998654 899999999999998543211110 011233332221 1 234445677
Q ss_pred ecCCCCcEEEEeccc
Q 044557 344 SGSLDCDIKVWQISF 358 (362)
Q Consensus 344 s~s~D~~i~~W~~~~ 358 (362)
+...-..||.|+..+
T Consensus 321 ~~~sgs~ir~l~~h~ 335 (397)
T KOG4283|consen 321 NLLEGSFVRRLSTHL 335 (397)
T ss_pred EccCceEEEeeeccc
Confidence 777777899998753
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=163.25 Aligned_cols=219 Identities=24% Similarity=0.391 Sum_probs=167.8
Q ss_pred cceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
.+++.++...++ +++.++..|.|.+|.+.++... +.+..|-..|
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL----------------------------------~v~~aHYQ~I 126 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL----------------------------------NVLSAHYQSI 126 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHH----------------------------------HHHHhhccce
Confidence 456777766554 3555668999999998766421 1123577899
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCC---------ceEEEeeeccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeC
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSD---------FKCLESITNAHDDAINAVALSDDG---DVYTGSADKKIKVWRR 213 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~---------~~~~~~~~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~ 213 (362)
+|+.|+.|+.+|+|||.||.|.+|.+.+ .+.+..+. .|+-+|+++...+.| +++|++.|.++|+||+
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 9999999999999999999999998632 23455554 799999999987664 5999999999999999
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC------------CcEEEEEeecCccc--ee
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD------------GNILVVGALRGHTK--SI 279 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~------------~~~~~~~~~~~h~~--~v 279 (362)
..+....+. ..+.++.+++++|.+..++.|+.+|.|.+.++..-. ........+.||.+ .|
T Consensus 206 S~g~LLlti-----~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 206 SLGVLLLTI-----TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred ccceeeEEE-----ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 887543332 246789999999999999999999999887764322 11223455778988 89
Q ss_pred EEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeee
Q 044557 280 LCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 280 ~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~ 328 (362)
+|++.+ +.++++|++||.|.+||... -++++++.--.++|+.+.+.|
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S--~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYS--KQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecch--HHHHHHHhhhccccceeEeec
Confidence 999886 45999999999999999644 356777665677888888844
No 136
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-19 Score=166.28 Aligned_cols=193 Identities=22% Similarity=0.244 Sum_probs=157.2
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEee--eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI--TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
..+++++.++-|++.+.|+..|.|-+|+++++-....+ ...|..+|..++...-++ +++++.+|.++.||.......
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 46889999999999999999999999999999777666 357999999999987776 889999999999998765422
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCc
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKT 297 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~ 297 (362)
.+ +. -..+++.+..+.....++.+..|-.|+++|..+. .++..+.||+++|++++|+++ .+++++.|++
T Consensus 529 ~~----l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~----kvvR~f~gh~nritd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 529 KS----LR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR----KVVREFWGHGNRITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred ee----ec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhh----hhhHHhhccccceeeeEeCCCCcEEEEeecCCc
Confidence 22 21 2456778888888889999999999999998753 256778999999999999876 8999999999
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCC-cEEEEec
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC-DIKVWQI 356 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~-~i~~W~~ 356 (362)
||+||+. .+.++..+. -..+...+.|+|+++ +||++..|. -|.+|--
T Consensus 600 Ir~wDlp--t~~lID~~~-vd~~~~sls~SPngD---------~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 600 IRTWDLP--TGTLIDGLL-VDSPCTSLSFSPNGD---------FLATVHVDQNGIYLWSN 647 (910)
T ss_pred EEEEecc--CcceeeeEe-cCCcceeeEECCCCC---------EEEEEEecCceEEEEEc
Confidence 9999964 345555443 466778889987654 799998884 4999953
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=5.1e-19 Score=154.42 Aligned_cols=320 Identities=19% Similarity=0.317 Sum_probs=201.9
Q ss_pred eeecccCccceeeeEecCc--EEEEecCCC--------eEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---
Q 044557 12 LTTLKGHNSYVSSLALAGK--FLYTGSSDN--------EVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--- 78 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~~~--~l~t~s~Dg--------~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--- 78 (362)
-+.+-||+..|.++.+.++ .+++|-.-| .+|+||..+.+. -.++-.....|.+++++.
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---------L~V~g~f~~GV~~vaFsk~~~ 167 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---------LHVIGFFDRGVTCVAFSKING 167 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee---------eeeeccccccceeeeecccCC
Confidence 3456799999999999754 456555545 489999554321 112222345677777753
Q ss_pred -ceeEE--EecCCcEEEEecCCCCCCccc------ceeeeeccCCCchhhh-------hccccccceeeeeeeeEEeeec
Q 044557 79 -DKLFS--AHQDHKIRVWKINNQEPDHQK------YTRLATLPTLGDRAIK-------LLMPKNHVQIRRHKTCTWVHHV 142 (362)
Q Consensus 79 -~~l~s--~~~dg~i~~w~~~~~~~~~~~------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~h~ 142 (362)
..|.. -+.+..+.+||.+.+....+. ......+|.....++. ++........++.-... ....
T Consensus 168 G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fe-k~ek 246 (626)
T KOG2106|consen 168 GSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFE-KREK 246 (626)
T ss_pred CceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccc-cccc
Confidence 12222 245677899998754421111 0111222221111110 11111111111111100 0112
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
..|.|++|.++|. +++|..+|.|.||+..+.+..+... +|.+.|.+++...+|.+++|+.|+.|..||-. .++....
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRET 323 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEeecCccceEEecccc-ccccccc
Confidence 5699999999998 5589999999999998877766665 89999999999999999999999999999822 1110000
Q ss_pred -------------------------------------ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC-
Q 044557 223 -------------------------------------VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG- 264 (362)
Q Consensus 223 -------------------------------------~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~- 264 (362)
.....+|......++.+|+...+++++.|+.+++|+-....-
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt 403 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWT 403 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEE
Confidence 011235666777888899999999999999999998211000
Q ss_pred ---------------cEEEEEe-----------------ecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCc--e
Q 044557 265 ---------------NILVVGA-----------------LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRN--Y 308 (362)
Q Consensus 265 ---------------~~~~~~~-----------------~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~--~ 308 (362)
....++. +.....++.+++|+++ ++|.||.|+.|.+|.+.... +
T Consensus 404 ~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence 0011111 1112557888998764 99999999999999865433 3
Q ss_pred eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 309 TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 309 ~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
..+....| ++|+.+.|++++ ++|.+-|.|-.|-.|.
T Consensus 484 ~r~~k~~g--s~ithLDwS~Ds---------~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 484 SRVGKCSG--SPITHLDWSSDS---------QFLVSNSGDYEILYWK 519 (626)
T ss_pred EEeeeecC--ceeEEeeecCCC---------ceEEeccCceEEEEEc
Confidence 33334444 899999887664 4789999999999994
No 138
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=1e-19 Score=156.91 Aligned_cols=299 Identities=19% Similarity=0.245 Sum_probs=201.4
Q ss_pred ccceeccceeeecccCccceeeeEec---C-cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC
Q 044557 3 NLSVVDHHCLTTLKGHNSYVSSLALA---G-KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA 78 (362)
Q Consensus 3 ~~~~~~~~~~~tl~gH~~~V~~l~~~---~-~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 78 (362)
||-.++.......+-|.+.|++++|. . +.+|+|+.-|.|-+||+.+.+...... .....|.++|.+|.+.+
T Consensus 170 dl~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v-----~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 170 DLDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV-----YLFTPHSGPVSGLKFSP 244 (498)
T ss_pred ccccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce-----EEeccCCccccceEecC
Confidence 55667777788889999999999995 3 689999999999999986432222111 12233567899998875
Q ss_pred ---ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC
Q 044557 79 ---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET 155 (362)
Q Consensus 79 ---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 155 (362)
+.+++.++||+|++=|++..... .+. ..+ .-...+..+.|+.+..
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~e-----~v~-------------s~~--------------~d~~~fs~~d~~~e~~ 292 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNISE-----EVL-------------SLD--------------TDNIWFSSLDFSAESR 292 (498)
T ss_pred CChhheeeeccCceeeeeeecchhhH-----HHh-------------hcC--------------ccceeeeeccccCCCc
Confidence 46999999999999998653210 000 000 0012345667777777
Q ss_pred EEEEEECCCcEEEEECCCceE-EEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcce-eehhhhcccc
Q 044557 156 LLYSVSWDRTIKIWRTSDFKC-LESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHS-LVDVLERHNS 231 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~~~~-~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~-~~~~~~~h~~ 231 (362)
.++.+..=|.+.+||.+.... ...+ ..|...|.+|+++|-.. ++|++.|++.+|||+..-..+.+ ++.. -.|..
T Consensus 293 ~vl~~~~~G~f~~iD~R~~~s~~~~~-~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst-~~Hrr 370 (498)
T KOG4328|consen 293 SVLFGDNVGNFNVIDLRTDGSEYENL-RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST-LPHRR 370 (498)
T ss_pred cEEEeecccceEEEEeecCCccchhh-hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec-ccccc
Confidence 777777667999999988664 3333 36888999999999764 89999999999999987655443 3333 35899
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEecc----CCCCcEEEEEeecCccce----e--EEEEEeCC--eEEEeeCCCcEE
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKE----EDDGNILVVGALRGHTKS----I--LCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~~~~~h~~~----v--~~~~~~~~--~~~s~s~D~~i~ 299 (362)
.|.+..|||++..|++.+.|++||+||.. .......+ -|... + ..-.|.++ +++.|-.-+.|-
T Consensus 371 sV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-----~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 371 SVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-----PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPID 445 (498)
T ss_pred eeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-----eccCcccccccchhheeCCCccEEEEeccCccee
Confidence 99999999999889999999999999973 21111111 12221 1 12234444 788888888899
Q ss_pred EeeCCCCceeeeeEecC-CCCcEEEE-EeeecCCccCCCCCce-EEEecCCCCcEEEEec
Q 044557 300 IWRGIDRNYTCLAVLEG-HRGPVKCL-AAAIDNDRCDSSDTSY-LVCSGSLDCDIKVWQI 356 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~-h~~~v~~~-~~~~~~~~~~~~~~~~-~l~s~s~D~~i~~W~~ 356 (362)
+++... .+.+..+.+ -...|.++ +| +|.+. +++.|+.-|.|.||--
T Consensus 446 v~~~~~--~q~v~el~~P~~~tI~~vn~~---------HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 446 VFDGNG--GQMVCELHDPESSTIPSVNEF---------HPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred EEcCCC--CEEeeeccCccccccccceee---------cccccceeccCCccceEEEEec
Confidence 998543 333444422 22234332 23 34445 4555566677888743
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=1.8e-18 Score=152.65 Aligned_cols=261 Identities=17% Similarity=0.189 Sum_probs=165.8
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--ee-EEEecCCcEEEEecCCCCCCcccce
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KL-FSAHQDHKIRVWKINNQEPDHQKYT 106 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~s~~~dg~i~~w~~~~~~~~~~~~~ 106 (362)
+.++|++.|++|++||+.+.. ....+. . ...+..+.+.++ .+ ++++.++.|++||...++..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~--~~~~~~-------~-~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~----- 66 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLE--VTRTFP-------V-GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI----- 66 (300)
T ss_pred cEEEEecCCCEEEEEECCCCc--eEEEEE-------C-CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-----
Confidence 578999999999999986543 111111 1 122345566554 35 45677899999998654310
Q ss_pred eeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE-ECCCcEEEEECCCceEEEeeeccCc
Q 044557 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV-SWDRTIKIWRTSDFKCLESITNAHD 185 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~h~ 185 (362)
..++ .+ ..+..++++|+++.++++ +.|+.|++||+++.+.+..+. +.
T Consensus 67 --~~~~---------------------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~ 114 (300)
T TIGR03866 67 --GTLP---------------------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VG 114 (300)
T ss_pred --Eecc---------------------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CC
Confidence 0000 01 123467899999877654 568999999999887776654 22
Q ss_pred ccEEEEEEcCCCc-EEEEeCCC-eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCC
Q 044557 186 DAINAVALSDDGD-VYTGSADK-KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEED 262 (362)
Q Consensus 186 ~~v~~v~~~~~~~-~~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~ 262 (362)
..+.+++|+|++. +++++.++ .+.+||..++...... .....+..++|+|++++|+.+ ..++.|++||+++.
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV-----LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE-----EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 3467899999998 55565554 5677888765322111 122345778999999988654 46999999999864
Q ss_pred CCcEEEEEeecCc-----cc--eeEEEEEeCC--e-EEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc
Q 044557 263 DGNILVVGALRGH-----TK--SILCMAVVSD--L-VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 263 ~~~~~~~~~~~~h-----~~--~v~~~~~~~~--~-~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
+. +..+..+ .. ....+.++++ + +++.+.++.|.+|+.. .++.+..+. +...+.+++|+|+++
T Consensus 190 ~~----~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~--~~~~~~~~~-~~~~~~~~~~~~~g~- 261 (300)
T TIGR03866 190 KV----IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK--TYEVLDYLL-VGQRVWQLAFTPDEK- 261 (300)
T ss_pred ee----eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC--CCcEEEEEE-eCCCcceEEECCCCC-
Confidence 32 1112111 11 1234666643 4 4555667789999964 344444442 445789999987653
Q ss_pred cCCCCCceEEEe-cCCCCcEEEEeccc
Q 044557 333 CDSSDTSYLVCS-GSLDCDIKVWQISF 358 (362)
Q Consensus 333 ~~~~~~~~~l~s-~s~D~~i~~W~~~~ 358 (362)
+|++ ++.+++|++||+..
T Consensus 262 --------~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 262 --------YLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred --------EEEEEcCCCCeEEEEECCC
Confidence 3555 46799999999964
No 140
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=2.3e-20 Score=150.43 Aligned_cols=280 Identities=18% Similarity=0.254 Sum_probs=181.2
Q ss_pred eeeecccCccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-ceeEEEecCC
Q 044557 11 CLTTLKGHNSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-DKLFSAHQDH 88 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~s~~~dg 88 (362)
....|++|.+.|+++.|. ..+|++|..-|.|++|++.+.......+ ..+...+..+...+ +.+.+-+.|.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r--------~~g~~~it~lq~~p~d~l~tqgRd~ 77 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIR--------LFGRLFITNLQSIPNDSLDTQGRDP 77 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhh--------hhccceeeceeecCCcchhhcCCCc
Confidence 445688999999999995 6789999999999999987643211111 12334555665544 6789999999
Q ss_pred cEEEEecCCCCCCccc--------ceeeeeccCCCchhhhhcccc------------ccceeeeeeeeEEeeecCceeEE
Q 044557 89 KIRVWKINNQEPDHQK--------YTRLATLPTLGDRAIKLLMPK------------NHVQIRRHKTCTWVHHVDAVSAL 148 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~h~~~v~~~ 148 (362)
.+.+|++......... +.+...++......-.+..+. ...++.-... .-....+.++|.
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-SERSKLGSVMCQ 156 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-hhccccCceeee
Confidence 9999998653211000 001111110000000000000 0011110000 011244567777
Q ss_pred EEec-CCC--EEEEEECCCcEEEEECCCceEEEee---------eccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCC
Q 044557 149 ALTK-DET--LLYSVSWDRTIKIWRTSDFKCLESI---------TNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSP 215 (362)
Q Consensus 149 ~~~~-~~~--~l~s~s~d~~i~iwd~~~~~~~~~~---------~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~ 215 (362)
.+.- .++ +|++|-++|.+-+||+.++..+..+ ...|.++|.++.+.+.- +=++|+.+..+.+|.+..
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 6422 232 5677889999999999886322111 23588999999987543 356788888899998765
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS 293 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s 293 (362)
......+-......+-+|..+.+-||++.++++|.|++||+|+.++.+ .+..++.|...|.+++|+++ ++|.+|
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~----pLAVLkyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN----PLAVLKYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC----chhhhhhhhcceeEEEeCCCCchhhhcc
Confidence 422222222222335578899999999999999999999999988644 35567889999999999876 899999
Q ss_pred CCCcEEEeeC
Q 044557 294 ADKTIRIWRG 303 (362)
Q Consensus 294 ~D~~i~~W~~ 303 (362)
.|+.|-+|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 9999999984
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.5e-20 Score=159.28 Aligned_cols=236 Identities=20% Similarity=0.353 Sum_probs=168.1
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeec------------cceeEEeecceeEEEEEcC---ceeEEEecCCcEEEE
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLS------------NNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIRVW 93 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~------------~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w 93 (362)
|+|+|.|..|..|.|||+.-.....+.-..+ .......|...|.++.+.. +-|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 5799999999999999975422211111111 0111123444455555443 459999999999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEECC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~ 172 (362)
|+..+.+.. ++.+|.+.|.+++|+|.. .+|++||.|++|++.|.+
T Consensus 272 D~~~g~p~~----------------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 272 DVDTGKPKS----------------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred EcCCCCcce----------------------------------ehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 998876421 112578899999998864 689999999999999998
Q ss_pred CceEE-EeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-CCEEEEE
Q 044557 173 DFKCL-ESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD-GSVLYSG 248 (362)
Q Consensus 173 ~~~~~-~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~ 248 (362)
..... ..+ ...+.|..++|.|... ++++..||+|+-+|.+... ..+..++.|..+|.+|++++. ..+++++
T Consensus 318 ~~~~s~~~w--k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 318 DPSNSGKEW--KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred CccccCceE--EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeec
Confidence 53322 222 2456789999998764 7788999999999998654 345567789999999999874 4678999
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCC
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~ 305 (362)
|.|+.|++|++...+........+ -.+...|+++.++ .++.|+..+.+++|+...
T Consensus 393 s~d~~Vklw~~~~~~~~~v~~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSPKSVKEHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred cccceEEEEeecCCCCcccccccc--cccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 999999999987655433222111 1233567777665 688889888999999643
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=2.6e-20 Score=162.28 Aligned_cols=241 Identities=18% Similarity=0.292 Sum_probs=175.6
Q ss_pred cceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
-..|.++.++. ..+|+|+ -|.|++||+....... . +..++. +.-..-|
T Consensus 419 GEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~-P---vsqLdc-------------------------l~rdnyi 468 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKS-P---VSQLDC-------------------------LNRDNYI 468 (705)
T ss_pred CcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCC-c---cccccc-------------------------cCcccce
Confidence 34555555553 3477777 5679999996543211 1 111111 0112347
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec-cCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN-AHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
+++...|||+.|++|++-.++.|||+.......+... ...-....++++||.+ .+++..||.|.|||+.+. .+.
T Consensus 469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~V 544 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLV 544 (705)
T ss_pred eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eee
Confidence 8889999999999999999999999987653222211 1122456688899988 679999999999999764 567
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEe
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIW 301 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W 301 (362)
..+++|..++.||.+++||..|.+||.|++||.||+++..... . ..-...|.++.+++ +.++.|=+.+.+.+-
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq----q-hdF~SQIfSLg~cP~~dWlavGMens~vevl 619 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ----Q-HDFSSQIFSLGYCPTGDWLAVGMENSNVEVL 619 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh----h-hhhhhhheecccCCCccceeeecccCcEEEE
Confidence 7889999999999999999999999999999999998754211 0 11245688887764 589999999999887
Q ss_pred eCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 302 RGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 302 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.... .....+.-|.+.|.++.|.+- |++++|.+.|..+..|...|-
T Consensus 620 h~sk---p~kyqlhlheScVLSlKFa~c---------GkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 620 HTSK---PEKYQLHLHESCVLSLKFAYC---------GKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred ecCC---ccceeecccccEEEEEEeccc---------CceeeecCchhhhhhccCccc
Confidence 6432 223457789999999999754 457889999999999988663
No 143
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-18 Score=156.91 Aligned_cols=243 Identities=19% Similarity=0.270 Sum_probs=181.2
Q ss_pred cceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee-ecCc
Q 044557 68 KGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH-HVDA 144 (362)
Q Consensus 68 ~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~ 144 (362)
...+.+++++. +.|+.+-.||.|.+|++...-.. . ..+.+ ....
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~----~-----------------------------~vi~g~~drs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL----E-----------------------------PVIHGPEDRS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCcee----e-----------------------------EEEecCCCCc
Confidence 45677887764 45888999999999998642100 0 01111 2346
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
|.+++|++. ..|.+.+.+|.|.-||+.+.+....+. ...++|++++.+|.+. ++.|+.||.+..++..++.. +..
T Consensus 72 IE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I--~~~ 147 (691)
T KOG2048|consen 72 IESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI--TYK 147 (691)
T ss_pred eeeEEEccC-CeEEeecCCceEEEEecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceE--EEE
Confidence 889999954 557788889999999999998877665 5678999999999987 77788999777777665542 233
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC----ccceeEEEEE-eCCeEEEeeCCCcE
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG----HTKSILCMAV-VSDLVCSGSADKTI 298 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~----h~~~v~~~~~-~~~~~~s~s~D~~i 298 (362)
..+..-.+.|.+++|+|++..|++|+.||.|++||...+.........+.+ ...-|.++.+ ..+.+++|..-|+|
T Consensus 148 r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V 227 (691)
T KOG2048|consen 148 RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTV 227 (691)
T ss_pred eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceE
Confidence 344455689999999999999999999999999999876544322222222 2223566665 45699999999999
Q ss_pred EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 299 RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++||. ..+.+++....|...|.+++..++++ .+.+++-|+.|..+....
T Consensus 228 ~FWd~--~~gTLiqS~~~h~adVl~Lav~~~~d---------~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 228 TFWDS--IFGTLIQSHSCHDADVLALAVADNED---------RVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred EEEcc--cCcchhhhhhhhhcceeEEEEcCCCC---------eEEEccCCCceEEEEecC
Confidence 99995 34677888889999999999976654 488999999988776643
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.9e-19 Score=161.03 Aligned_cols=246 Identities=18% Similarity=0.233 Sum_probs=165.4
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS 159 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 159 (362)
.|+.+..||.|.++|.....-. ........+..|...|..+.+.|....|++
T Consensus 66 iLavadE~G~i~l~dt~~~~fr----------------------------~ee~~lk~~~aH~nAifDl~wapge~~lVs 117 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFR----------------------------LEERQLKKPLAHKNAIFDLKWAPGESLLVS 117 (720)
T ss_pred eEEEecCCCceeeecchhhhcc----------------------------hhhhhhcccccccceeEeeccCCCceeEEE
Confidence 4888999999999987543210 000111233568999999999997778999
Q ss_pred EECCCcEEEEECCCceEEEe-eeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCC------------------
Q 044557 160 VSWDRTIKIWRTSDFKCLES-ITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNK------------------ 218 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~-~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~------------------ 218 (362)
++.|.++++||+++.++... +..+|+..|.++||.|... |++|+.||.|.|||+.....
T Consensus 118 asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 118 ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred ccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 99999999999999887654 3458999999999999875 88999999999999753210
Q ss_pred -----cceeehhhhccccceeE---EEEecCCCEEEEEcC-CCcEEEEeccCCCCcEE----EEEeecCc---cceeEEE
Q 044557 219 -----KHSLVDVLERHNSGINA---LALSCDGSVLYSGAC-DRSIIVWEKEEDDGNIL----VVGALRGH---TKSILCM 282 (362)
Q Consensus 219 -----~~~~~~~~~~h~~~v~~---i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~----~~~~~~~h---~~~v~~~ 282 (362)
..+-+..-..+...|.+ +.+..|...|+++|. |+.|++||++....... ....+..| ...+.++
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 00001112234445555 566679999999998 99999999986432211 11112223 1234455
Q ss_pred EEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 283 AVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 283 ~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
..+ +.++.....|+.|.+|++......+++.+.||...-.-+.- .-.+++.+|+||++|....+|.+..|-
T Consensus 278 ~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-------~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 278 ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-------ELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee-------ecCCCCceEeccCCCcceeeeeecCcc
Confidence 443 45544444499999999755444555666666432221111 123456789999999999999997764
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.3e-18 Score=161.67 Aligned_cols=241 Identities=17% Similarity=0.245 Sum_probs=172.9
Q ss_pred ecceeEEEEEc--CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 67 GKGAVKSLVVL--ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 67 ~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
|....+.+.+. ++.|++++.||.|++|+.......... ...+...
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t---------------------------------i~~~g~~ 58 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET---------------------------------IDISGEL 58 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch---------------------------------hhccCce
Confidence 34444555554 456999999999999987643211000 0013345
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
|.+++. ++++|++|+.+++|.+|.+.+++.-.-+. ..+-++++++++.+|. ++.|+.|-.|++-+..+... .
T Consensus 59 v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~----~ 131 (933)
T KOG1274|consen 59 VSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILA-RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ----E 131 (933)
T ss_pred eEEEee--cccceEEeeccceEEEeeCCCCCccceee-eeeccceEEEEecCCcEEEeecCceeEEEEeccccch----h
Confidence 556554 45689999999999999998876533232 3566899999999997 77889999999999887653 3
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec---Cc-cceeEEEEEeCC--eEEEeeCCCc
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR---GH-TKSILCMAVVSD--LVCSGSADKT 297 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~h-~~~v~~~~~~~~--~~~s~s~D~~ 297 (362)
..+.+|.++|.++.|+|++.+||+.+.||.|++|++.+......+....+ .. ...+..++|+|+ .++....|+.
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 35678999999999999999999999999999999986432221111111 11 223455678765 7889999999
Q ss_pred EEEeeCCCCceeeeeEec--CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 298 IRIWRGIDRNYTCLAVLE--GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++|+.. .+.....|. -|++.+..++|+|. |.|||+++.||.|.|||+..
T Consensus 212 Vkvy~r~--~we~~f~Lr~~~~ss~~~~~~wsPn---------G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 212 VKVYSRK--GWELQFKLRDKLSSSKFSDLQWSPN---------GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEccC--CceeheeecccccccceEEEEEcCC---------CcEEeeeccCCcEEEEeccc
Confidence 9999843 344444443 34555899988765 46899999999999999974
No 146
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=7.7e-20 Score=161.55 Aligned_cols=212 Identities=25% Similarity=0.423 Sum_probs=160.9
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC--------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCe
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD--------FKCLESITNAHDDAINAVALSDDGD-VYTGSADKK 207 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~ 207 (362)
+...|.+-|+.++|+|....|++++.|++|++|+++. .+++.++. +|.++|.|+++++++. +++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccCce
Confidence 5567889999999999999999999999999999932 23455664 8999999999999987 999999999
Q ss_pred EEEEeCC------CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcE----------EEEE-
Q 044557 208 IKVWRRS------PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI----------LVVG- 270 (362)
Q Consensus 208 i~iw~~~------~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~~- 270 (362)
|+.|++. +......+...+.+|...|+.+++|+....|++++.||++|.|+........ ..+.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 9999543 2222334556778999999999999999999999999999999854322200 0000
Q ss_pred -----------------------------eecC--cc-----ceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeee
Q 044557 271 -----------------------------ALRG--HT-----KSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 271 -----------------------------~~~~--h~-----~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
.+.. -. ..+..+-.. .++.+++.+|+.|++++. ..+..++
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn--~~~~~l~ 525 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN--KTGKILH 525 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc--cccccch
Confidence 0000 00 011112221 247889999999999984 4567788
Q ss_pred EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 313 VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 313 ~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
....|...|+++++.|++ .+|++|+.||.+++|++..++
T Consensus 526 s~~a~~~svtslai~~ng---------~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNG---------PYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred heeeccceecceeecCCC---------ceEEeecCCceeehhhccchh
Confidence 889999999999997654 469999999999999996554
No 147
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.1e-18 Score=149.01 Aligned_cols=287 Identities=12% Similarity=0.228 Sum_probs=198.5
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc---eeEEEecCCcEEE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD---KLFSAHQDHKIRV 92 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~l~s~~~dg~i~~ 92 (362)
-.+.|++|.|. ...+++|+.|+++++|.+.....++.+ .+....-++.+..+.++ .+++++.-..+..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lq-------S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQ-------SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhe-------eeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 36789999996 468999999999999987653322211 12223446666666543 5888898899999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee-cCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH-VDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
||+...+.. ++... .++ ...+....+++++++|+..|..|.|.+--.
T Consensus 285 yDle~ak~~-----k~~~~---------------------------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha 332 (514)
T KOG2055|consen 285 YDLETAKVT-----KLKPP---------------------------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA 332 (514)
T ss_pred eeccccccc-----cccCC---------------------------CCcccchhheeEecCCCCeEEEcccCceEEeehh
Confidence 999754421 11000 011 123455677999999999999999999998
Q ss_pred CCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC
Q 044557 172 SDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~ 250 (362)
.+++.+..+. -.+.|..++|+.+++ +++++.+|.|.+||+............ ..-.-++++.+++|.+||+|+.
T Consensus 333 kT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~---G~v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 333 KTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD---GSVHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred hhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec---CccceeeeeecCCCceEEeccC
Confidence 8888877765 357899999998887 888899999999999876443333221 1112357788899999999999
Q ss_pred CCcEEEEeccCC--CCcEEEEEeecCccceeEEEEEeCC--e--EEEeeCCCcEEEeeCCCCc-eeeeeEecCCCCcEEE
Q 044557 251 DRSIIVWEKEED--DGNILVVGALRGHTKSILCMAVVSD--L--VCSGSADKTIRIWRGIDRN-YTCLAVLEGHRGPVKC 323 (362)
Q Consensus 251 d~~i~~wd~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~--~--~~s~s~D~~i~~W~~~~~~-~~~~~~l~~h~~~v~~ 323 (362)
.|.|.|||..+. ......+.++..-+-.|.++.|+++ + ++|-..+..+|+=.+..-+ +....+...--..|+|
T Consensus 408 ~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTC 487 (514)
T ss_pred cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEE
Confidence 999999996532 1122234445555667889999876 3 4555567888887532100 0001112334556999
Q ss_pred EEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 324 LAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++|+|.+. +||.|-.+|.+.+|.+.
T Consensus 488 ~aFSP~sG---------~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 488 MAFSPNSG---------YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEecCCCc---------eEEeecCCCceeeEeec
Confidence 99988643 69999999999999984
No 148
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.8e-18 Score=142.80 Aligned_cols=195 Identities=19% Similarity=0.278 Sum_probs=148.2
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeC
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG---DVYTGSADKKIKVWRR 213 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~ 213 (362)
.+..|.+.+++++.+ +.++|+||.|-+|+|||++....+..+. .|.+.|+++.|.++- .|++|+.||.|.+|+.
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 345689999999985 7899999999999999999988888775 689999999998765 5999999999999998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEE
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCS 291 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s 291 (362)
.+. .+...++.|...|+.++++|.|+.-++-+.|+.++.|++..++.... ..++ +.... +.|+ +++++.
T Consensus 115 ~~W----~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v--~~L~-~~at~--v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 115 GSW----ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV--LNLK-NKATL--VSWSPQGDHFVV 185 (362)
T ss_pred CCe----EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee--eccC-Cccee--eEEcCCCCEEEE
Confidence 765 35667788999999999999999999999999999999987654332 2232 22222 4454 567777
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++.+ .|-+|..... .....+. ....+.++-|- .+..|++|++|+.|++||.+
T Consensus 186 ~~~~-~i~i~q~d~A--~v~~~i~-~~~r~l~~~~l----------~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 186 SGRN-KIDIYQLDNA--SVFREIE-NPKRILCATFL----------DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred Eecc-EEEEEecccH--hHhhhhh-ccccceeeeec----------CCceEEEecCCceEEEeccC
Confidence 6665 5889975332 1222222 12345555552 23468899999999999985
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-18 Score=151.61 Aligned_cols=259 Identities=14% Similarity=0.153 Sum_probs=188.5
Q ss_pred eeeeEecC-cEEE--EecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEecCCcEEEEecC
Q 044557 22 VSSLALAG-KFLY--TGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 22 V~~l~~~~-~~l~--t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~ 96 (362)
+.++.|.. ++|+ +.+.|..|++|.-.....+.+.. -...-..-.|+... .-++++++..+.|++||++
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~-------~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~ 109 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV-------RKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLR 109 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCcccee-------eccccchHHHHhhhhcceeeeccCcCceeeehhhH
Confidence 77778853 3354 44568899999754432211100 00000112222221 2468899999999999986
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceE
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 176 (362)
..... ..+..|+..|+++.++....+||+++..|.|.|..+.++..
T Consensus 110 ~kl~h----------------------------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 110 AKLIH----------------------------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred HHHHh----------------------------------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 32100 00135889999999999999999999999999999998877
Q ss_pred EEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-CCEEEEEcCCCc
Q 044557 177 LESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD-GSVLYSGACDRS 253 (362)
Q Consensus 177 ~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~~~d~~ 253 (362)
-..+..+..+.|.-+.|+|..+ |.+++.+|.|.+||+....+. ......|..|...|+|+|. ...|++-|.|..
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk 232 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FHASEAHSAPCRGICFSPSNEALLVSVGYDKK 232 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---cchhhhccCCcCcceecCCccceEEEecccce
Confidence 6777666667888999999886 568899999999999765543 3456679999999999995 467889999999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
|.+||.......-. +. -..+...++|.++ +|+.|+..|.|..||+.. ...+++++..|...|++++|.+..
T Consensus 233 i~~yD~~s~~s~~~----l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~-~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 233 INIYDIRSQASTDR----LT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS-TKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEeecccccccce----ee-ecCCcceeeecCCceEEEeecCCceEEEEeccc-CCCCceEeeecccceeEEEeeecc
Confidence 99999875432211 11 1334677888754 899999999999999754 346789999999999999999874
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=7.8e-19 Score=151.54 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=154.1
Q ss_pred eeecCceeEEEEecCC--CEEEEEECCCcEEEEECCCce----EEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEE
Q 044557 139 VHHVDAVSALALTKDE--TLLYSVSWDRTIKIWRTSDFK----CLESITNAHDDAINAVALSDDG--DVYTGSADKKIKV 210 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~i 210 (362)
..+.++|.+++|+|.. +++|+|..-|.|-+||+...+ -+. +-..|.++|.++.|+|.+ ++++.++||+|+.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~-~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY-LFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE-EeccCCccccceEecCCChhheeeeccCceeee
Confidence 4578899999999965 478888899999999995221 122 234799999999999976 4999999999999
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---C
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---D 287 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~ 287 (362)
-|++.... .....+..-...+..+.|+.+...++.+..=|...+||++.+..+. ..+.-|...|..+++.| .
T Consensus 262 ~D~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~---~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 262 QDFEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY---ENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeecchhh--HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc---hhhhhhhcccceeecCCCCch
Confidence 99876421 1111222234567778888888888888888899999998765433 34556888999999865 4
Q ss_pred eEEEeeCCCcEEEeeCCCCcee--eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 288 LVCSGSADKTIRIWRGIDRNYT--CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~~~~--~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+++|+|.|++.+|||...-..+ ++-....|+..|.++.|+|++. . |++.+.|+.|||||..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g--------t-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG--------T-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC--------c-eEeeccCCceEEeecc
Confidence 8999999999999996421111 1222346999999999998653 3 8899999999999983
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.2e-17 Score=138.81 Aligned_cols=297 Identities=16% Similarity=0.277 Sum_probs=195.3
Q ss_pred cceeeec-ccCccceeeeEec-------CcEEEEecCCCeEEEeecCCCCccc-ceeeeccceeEEeecceeEEE----E
Q 044557 9 HHCLTTL-KGHNSYVSSLALA-------GKFLYTGSSDNEVRSWDCNTFSSEL-DQEFLSNNNIVAVGKGAVKSL----V 75 (362)
Q Consensus 9 ~~~~~tl-~gH~~~V~~l~~~-------~~~l~t~s~Dg~i~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i----~ 75 (362)
+++...+ +.|+.+|..+.|. .+.++|.|. .++-+++........ .+.+... .+....... .
T Consensus 27 yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~-----d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 27 YKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADE-----DHDESFYTCSWSYD 100 (385)
T ss_pred eEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCC-----CCCcceEEEEEEec
Confidence 4455444 5689999999984 245676655 566677765432110 0111000 011111111 1
Q ss_pred Ec-Cc-eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC
Q 044557 76 VL-AD-KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD 153 (362)
Q Consensus 76 ~~-~~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 153 (362)
.. ++ .++.++.-|.|++.|+...... ..+.+|...|..+.+.|+
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~----------------------------------~~~~ghG~sINeik~~p~ 146 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCS----------------------------------KNYRGHGGSINEIKFHPD 146 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhc----------------------------------cceeccCccchhhhcCCC
Confidence 12 12 4778888999999988654311 123478899999999997
Q ss_pred C-CEEEEEECCCcEEEEECCCceEEEee--eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee-------
Q 044557 154 E-TLLYSVSWDRTIKIWRTSDFKCLESI--TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL------- 222 (362)
Q Consensus 154 ~-~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~------- 222 (362)
. ++++++|.|..||+|++++..|+..+ ..+|.+.|.++.|+++|. +++++.|..+++|++...+....+
T Consensus 147 ~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 147 RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 5 68999999999999999999988765 247999999999999986 899999999999998732110000
Q ss_pred -----------------ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC----------CCCcEEEEEeecCc
Q 044557 223 -----------------VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE----------DDGNILVVGALRGH 275 (362)
Q Consensus 223 -----------------~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~----------~~~~~~~~~~~~~h 275 (362)
.....-|...|.|+.|- |.++++=|.++.|.+|..-. ++....+++.++-.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~ 304 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP 304 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence 01223467777777775 58999999999999997511 12223345555555
Q ss_pred cceeEEEEEe----CCeEEEeeCCCcEEEeeCCCCceeeeeEecCC--CCcEEEEEeeecCCccCCCCCceEEEecCCCC
Q 044557 276 TKSILCMAVV----SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGH--RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC 349 (362)
Q Consensus 276 ~~~v~~~~~~----~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~ 349 (362)
...+.-+.|. .++++.|.+-|.|.+|++.........++..+ ...|...+|+.++ .+|+...+|+
T Consensus 305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg---------s~lv~vcdd~ 375 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG---------SILVLVCDDG 375 (385)
T ss_pred ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC---------cEEEEEeCCC
Confidence 5566666654 34899999999999999754333223334322 3456666776443 4677777899
Q ss_pred cEEEEec
Q 044557 350 DIKVWQI 356 (362)
Q Consensus 350 ~i~~W~~ 356 (362)
+|--||.
T Consensus 376 ~Vwrwdr 382 (385)
T KOG1034|consen 376 TVWRWDR 382 (385)
T ss_pred cEEEEEe
Confidence 9988875
No 152
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.8e-16 Score=126.68 Aligned_cols=248 Identities=19% Similarity=0.289 Sum_probs=167.5
Q ss_pred eeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeE--EeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCC
Q 044557 24 SLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIV--AVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPD 101 (362)
Q Consensus 24 ~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~ 101 (362)
+++..+++|+.|+.+|+|-+..++....... +..+...++ ..|.+++..+.+..+.|++++ ||.|+-|..+.....
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa-~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~E~~es 94 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-EPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWNEEEES 94 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhcccc-CCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeehhhhhh
Confidence 3445678999999999999999875321111 111111222 356789999999877787777 699999987654321
Q ss_pred cccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeee
Q 044557 102 HQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT 181 (362)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 181 (362)
... ..+- ....|.. . . .-.-..|++|...|..+-++.++.|+.+.-||+++++..+.+.
T Consensus 95 ~~~-K~lw----------e~~~P~~-~------~---~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 95 LAT-KRLW----------EVKIPMQ-V------D---AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred ccc-hhhh----------hhcCccc-c------C---cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence 000 0000 0000000 0 0 0012357889999888877777899999999999999888775
Q ss_pred ccCcccEEEEEE-cCCCcEEEEeCCCeEEEEeCCCCCCcceeeh-----hhhccc-cceeEEEEecCCCEEEEEcCCCcE
Q 044557 182 NAHDDAINAVAL-SDDGDVYTGSADKKIKVWRRSPGNKKHSLVD-----VLERHN-SGINALALSCDGSVLYSGACDRSI 254 (362)
Q Consensus 182 ~~h~~~v~~v~~-~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~-----~~~~h~-~~v~~i~~s~~~~~l~s~~~d~~i 254 (362)
+|++.+.+++- +..+++++|++||++|+||..+++..+.+.. .+..|. ..|-+++. +...|++|+. ..+
T Consensus 154 -GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~l 229 (325)
T KOG0649|consen 154 -GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKL 229 (325)
T ss_pred -CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-Cce
Confidence 99999999987 6778899999999999999998875543321 111222 23445544 5568877764 468
Q ss_pred EEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeC
Q 044557 255 IVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 255 ~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
.+|.+++.+.. .+-.+++| +..+.|..+.++++++.+.|.-|..
T Consensus 230 slwhLrsse~t--~vfpipa~---v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 230 SLWHLRSSEST--CVFPIPAR---VHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred eEEeccCCCce--EEEecccc---eeEeeeecceEEEeccccceeeeee
Confidence 89999875542 33344444 5667788899999999999999975
No 153
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=6.6e-18 Score=143.42 Aligned_cols=251 Identities=17% Similarity=0.249 Sum_probs=169.8
Q ss_pred ecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc---CceeEEEecC
Q 044557 14 TLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL---ADKLFSAHQD 87 (362)
Q Consensus 14 tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~---~~~l~s~~~d 87 (362)
...||+++|..++|. ...|||||.|.+|+||++...... ..+......+..|...|..+.+- .+.|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--RDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--cCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 367999999999995 568999999999999998643211 11111223344555566666553 4669999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
.+|.+|++.+++.. . + ..|.+.|.++.|+.||.+|++++.|+.||
T Consensus 154 n~v~iWnv~tgeal-------i---------------------------~-l~hpd~i~S~sfn~dGs~l~TtckDKkvR 198 (472)
T KOG0303|consen 154 NTVSIWNVGTGEAL-------I---------------------------T-LDHPDMVYSMSFNRDGSLLCTTCKDKKVR 198 (472)
T ss_pred ceEEEEeccCCcee-------e---------------------------e-cCCCCeEEEEEeccCCceeeeecccceeE
Confidence 99999999776521 0 1 23889999999999999999999999999
Q ss_pred EEECCCceEEEeeeccCccc-EEEEEEcCCCcEEEEe----CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 168 IWRTSDFKCLESITNAHDDA-INAVALSDDGDVYTGS----ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
|||.++++.+..- .+|.+. -..+.|-.+|.+++.+ .+..+-+||..+-+... ....+. ..++|----|.||.
T Consensus 199 v~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elD-tSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 199 VIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI-ALQELD-TSNGVLLPFYDPDT 275 (472)
T ss_pred EEcCCCCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcc-eeEEec-cCCceEEeeecCCC
Confidence 9999999987765 467663 2334466677777644 67899999987654331 222232 23455544567888
Q ss_pred CEEEEEc-CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCC
Q 044557 243 SVLYSGA-CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 243 ~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~ 305 (362)
+.++.+| .|+.||+|.+..+.+....+.++.. ...=..+.+-+..-+..++....|+|+...
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S-~epQRG~g~mPKRGl~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS-KEPQRGMGFMPKRGLDVSKCEIARFYKLHE 338 (472)
T ss_pred CEEEEEecCCcceEEEEecCCCceeEEeccccc-CCccccccccccccccchHHHHHHHHHhhc
Confidence 8777555 6999999998765544444444432 122234555555445555555566666433
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=6.1e-18 Score=151.53 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=91.5
Q ss_pred eeEEEEec-CCCEEEEEcCCCcEEEEeccCCC---CcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCC
Q 044557 233 INALALSC-DGSVLYSGACDRSIIVWEKEEDD---GNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 233 v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~ 305 (362)
|+.+.|.| |...|+.++.||.|++|.+..+. ......+.+.+|...|.++.|.+ +.++++|.|-+|++||+.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~- 708 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA- 708 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh-
Confidence 34556666 66889999999999999876432 12233455778999999999975 689999999999999964
Q ss_pred CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 306 ~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.+....|.||.+.|.++||+|++. .+|+.+.||+||+++-.
T Consensus 709 -~~~~~~~l~gHtdqIf~~AWSpdGr---------~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 709 -NAKLYSRLVGHTDQIFGIAWSPDGR---------RIATVCKDGTLRVYEPR 750 (1012)
T ss_pred -hhhhhheeccCcCceeEEEECCCCc---------ceeeeecCceEEEeCCC
Confidence 3455567999999999999988764 59999999999999864
No 155
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2e-18 Score=152.76 Aligned_cols=273 Identities=20% Similarity=0.306 Sum_probs=173.9
Q ss_pred ecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCc
Q 044557 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHK 89 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~ 89 (362)
||..|.+.|+++.|. ...|++|+.||+|++|++..........+ ........|.++|.|+++.. ..+|+|+-||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~-epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV-EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce-eeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 788999999999994 46899999999999999843211111111 11223456889999998764 45999999999
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW 169 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iw 169 (362)
|+.|++.......... +.. ...-.+.+|.+.+..+++++....|++++.||++++|
T Consensus 368 I~~w~~p~n~dp~ds~---------dp~---------------vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w 423 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSY---------DPS---------------VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLW 423 (577)
T ss_pred eeeeccCCCCCccccc---------Ccc---------------hhccceeccccceeeeeecccccceeeecCCceEEee
Confidence 9999885221100000 000 0112346899999999999999999999999999999
Q ss_pred ECCCceEEEeeec-cCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeEEEEecCCC
Q 044557 170 RTSDFKCLESITN-AHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINALALSCDGS 243 (362)
Q Consensus 170 d~~~~~~~~~~~~-~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i~~s~~~~ 243 (362)
+...... ..+.. ...+...++.+-... . .++...-+.--+++.+.......+. .........++.+...|.+.
T Consensus 424 ~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 424 EPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred ccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence 9876544 11211 112233455543222 1 1221112222222222221110000 00011124567788899999
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
..+++..|+.|+++|...+. ++.....|...++++++.++ ++++++.|+.+++|+...+ .|+.....|.
T Consensus 503 ~~~~~hed~~Ir~~dn~~~~----~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k--~~~~es~~~r 573 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTGK----ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK--TCVLESTAHR 573 (577)
T ss_pred eeEecccCCceecccccccc----cchheeeccceecceeecCCCceEEeecCCceeehhhccch--heeecccccc
Confidence 99999999999999987643 44556779999999998765 8999999999999985432 3344444443
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=5.7e-18 Score=147.69 Aligned_cols=225 Identities=16% Similarity=0.245 Sum_probs=165.5
Q ss_pred eeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEecCC
Q 044557 11 CLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDH 88 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg 88 (362)
.++.+.|....+.++.-.+.|+++|+..+.|+|||+... +. .+.++.|...|.++..+ ..+|++++..|
T Consensus 73 ~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k---l~------hr~lkdh~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 73 RVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK---LI------HRFLKDHQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred eeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH---HH------hhhccCCcceeEEEEecCCcceeEEeccCC
Confidence 444455554333333324679999999999999998631 11 12234456678888765 34699999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee--cCceeEEEEecCCC-EEEEEECCCc
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH--VDAVSALALTKDET-LLYSVSWDRT 165 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~-~l~s~s~d~~ 165 (362)
.|.+..+.++.... . +.| ...|+-+.|+|..+ +|.+++.+|.
T Consensus 144 diiih~~~t~~~tt----~-------------------------------f~~~sgqsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTT----T-------------------------------FTIDSGQSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred cEEEEecccCcccc----c-------------------------------eecCCCCeEEEeecccccceeeEeeccCCe
Confidence 99999876543110 0 011 13455678888776 4677899999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
|.+||+........+...|..+...|+|+|... +++.+.|++|.+||.........+. -..|.+.++|+++|.
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-----y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-----YSHPLSTVAFSECGT 263 (673)
T ss_pred EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-----ecCCcceeeecCCce
Confidence 999999988888778889999999999999875 7789999999999987544322221 245789999999999
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (362)
+|+.|...|.|..||++..... +..+..|...|++++|.+.
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~P---v~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAP---VAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred EEEeecCCceEEEEecccCCCC---ceEeeecccceeEEEeeec
Confidence 9999999999999999875543 3456678889999999644
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=1.1e-17 Score=136.81 Aligned_cols=259 Identities=18% Similarity=0.229 Sum_probs=178.4
Q ss_pred eeecccCccceeeeEec---CcEEEEecCC-------CeEEEeecCCCCcccceeeecc-ceeEEeecceeEEEEEcCc-
Q 044557 12 LTTLKGHNSYVSSLALA---GKFLYTGSSD-------NEVRSWDCNTFSSELDQEFLSN-NNIVAVGKGAVKSLVVLAD- 79 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~---~~~l~t~s~D-------g~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~- 79 (362)
..+|..|.+.|+.|+-+ .+.|+|+-.| ..+-||.++............. ...-..+-+.+.|+.+.++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 34677789999999874 5677776442 2356998764322100000000 0000012346677777654
Q ss_pred -eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCE
Q 044557 80 -KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETL 156 (362)
Q Consensus 80 -~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~ 156 (362)
++++-. |..|.+|+++..... .+.++.... ..|....++-+|+| +++.
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~------vaev~ss~s----------------------~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKI------VAEVLSSES----------------------AEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred CeeEEec-cCceEEEEcccCcch------heeeccccc----------------------ccccceecccccCCCCccce
Confidence 465554 889999999765421 111111000 12444566777877 7787
Q ss_pred EEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee
Q 044557 157 LYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN 234 (362)
Q Consensus 157 l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~ 234 (362)
+++.+ |+++..||+++.++...+..+|..-|..+.|+|+.+ +++++.||.|++||....+ .....+.+|...|.
T Consensus 187 v~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 187 VATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVW 262 (370)
T ss_pred EEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEE
Confidence 87755 899999999998888888889999999999999886 8899999999999987543 34556788999999
Q ss_pred EEEEec-CCCEEEEEcCCCcEEEEeccCCCC----------------------cE---EEEEeecCccceeEEEEEeC-C
Q 044557 235 ALALSC-DGSVLYSGACDRSIIVWEKEEDDG----------------------NI---LVVGALRGHTKSILCMAVVS-D 287 (362)
Q Consensus 235 ~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~----------------------~~---~~~~~~~~h~~~v~~~~~~~-~ 287 (362)
++.|.| -.++|++||.|..|.+|...+-.. +. -.+.++..|.+.|.+++|+. +
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence 999998 457889999999999997532100 00 02345677999999999974 2
Q ss_pred --eEEEeeCCCcEEEeeC
Q 044557 288 --LVCSGSADKTIRIWRG 303 (362)
Q Consensus 288 --~~~s~s~D~~i~~W~~ 303 (362)
.+|+-|.||.+.|=+.
T Consensus 343 PWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSV 360 (370)
T ss_pred CeeEEEeccCceEEeecC
Confidence 8999999999988653
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=2.5e-18 Score=140.48 Aligned_cols=207 Identities=20% Similarity=0.299 Sum_probs=153.5
Q ss_pred EeeecCceeEEEEecCC-CEEEEEECC-------CcEEEEECCCc---------eEEEeeeccCcccEEEEEEcCCCcEE
Q 044557 138 WVHHVDAVSALALTKDE-TLLYSVSWD-------RTIKIWRTSDF---------KCLESITNAHDDAINAVALSDDGDVY 200 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~~-~~l~s~s~d-------~~i~iwd~~~~---------~~~~~~~~~h~~~v~~v~~~~~~~~~ 200 (362)
+.+|.+.|..++-+|-. ++|+++-.| -...||.+... +++..+...+-+.|.|+.|.|++.-+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl 138 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL 138 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence 35677888889888855 466666543 24779987642 23333433455689999999998744
Q ss_pred EEeCCCeEEEEeCCCCCCcce-ee-hhhhccccceeEEEEec--CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc
Q 044557 201 TGSADKKIKVWRRSPGNKKHS-LV-DVLERHNSGINALALSC--DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT 276 (362)
Q Consensus 201 s~~~dg~i~iw~~~~~~~~~~-~~-~~~~~h~~~v~~i~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~ 276 (362)
++-.|..|.+|+++.+..+.. +. ..-.++....++-+|+| ||..+++.+ |+++..||+++..... ..-.+|.
T Consensus 139 asm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~---sI~dAHg 214 (370)
T KOG1007|consen 139 ASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNN---SIEDAHG 214 (370)
T ss_pred EEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhc---chhhhhc
Confidence 444599999999987754221 11 11123566778889999 788877765 8899999998654332 2346799
Q ss_pred ceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 277 KSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 277 ~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
..|..+.|.++ +|+|++.||.||+||.... -.+++.+.+|+-.|+++.|.|..+ .+|.|||.|+.|.+
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-k~pv~el~~HsHWvW~VRfn~~hd--------qLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-KFPVQELPGHSHWVWAVRFNPEHD--------QLILSGGSDSAVNL 285 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCC-CccccccCCCceEEEEEEecCccc--------eEEEecCCCceeEE
Confidence 99999999876 7999999999999997543 456889999999999999988755 48999999999999
Q ss_pred Eecc
Q 044557 354 WQIS 357 (362)
Q Consensus 354 W~~~ 357 (362)
|...
T Consensus 286 sca~ 289 (370)
T KOG1007|consen 286 SCAS 289 (370)
T ss_pred Eecc
Confidence 9763
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.79 E-value=3.8e-16 Score=137.78 Aligned_cols=263 Identities=13% Similarity=0.155 Sum_probs=164.6
Q ss_pred cceeeecccCccceeeeEec--CcEE-EEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFL-YTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFS 83 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l-~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s 83 (362)
.+++.++.+|.. +.++.++ ++.+ ++++.|+.|++||..+... ...+.. + .....+.+.+ +.+++
T Consensus 21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~-------~-~~~~~~~~~~~g~~l~~ 89 (300)
T TIGR03866 21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPS-------G-PDPELFALHPNGKILYI 89 (300)
T ss_pred CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccC-------C-CCccEEEECCCCCEEEE
Confidence 456777777654 5678874 5555 6778899999999875321 111110 1 1123344443 34555
Q ss_pred E-ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 84 A-HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 84 ~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+ +.|+.|++||+..... +... .+...+.+++++|+++++++++.
T Consensus 90 ~~~~~~~l~~~d~~~~~~-------~~~~----------------------------~~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 90 ANEDDNLVTVIDIETRKV-------LAEI----------------------------PVGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EcCCCCeEEEEECCCCeE-------EeEe----------------------------eCCCCcceEEECCCCCEEEEEec
Confidence 4 5689999999865321 0000 11123567899999999999887
Q ss_pred CC-cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCeEEEEeCCCCCCcceeehhh-hcccc--ceeEE
Q 044557 163 DR-TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKKIKVWRRSPGNKKHSLVDVL-ERHNS--GINAL 236 (362)
Q Consensus 163 d~-~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~i~iw~~~~~~~~~~~~~~~-~~h~~--~v~~i 236 (362)
++ .+.+||.++++....... ...+..++|+|+++ ++ ++..++.|++||+.++.....+.... ..+.. ....+
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i 212 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV--DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGI 212 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc--CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccce
Confidence 75 567789988776654432 23457789999997 43 44569999999998765332221110 01111 23468
Q ss_pred EEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEe-eCCCcEEEeeCCCCceeeee
Q 044557 237 ALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSG-SADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 237 ~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~-s~D~~i~~W~~~~~~~~~~~ 312 (362)
+|+|++++++.+ +.++.+.+||.++.+ . ...+ .+...+.+++|+++ +++++ +.++.|++||.. ..+++.
T Consensus 213 ~~s~dg~~~~~~~~~~~~i~v~d~~~~~--~--~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~--~~~~~~ 285 (300)
T TIGR03866 213 KLTKDGKTAFVALGPANRVAVVDAKTYE--V--LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA--ALKVIK 285 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCc--E--EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC--CCcEEE
Confidence 899999986554 557789999987533 1 1222 13346788888754 66665 568999999964 355666
Q ss_pred EecCCCCcEEEEEee
Q 044557 313 VLEGHRGPVKCLAAA 327 (362)
Q Consensus 313 ~l~~h~~~v~~~~~~ 327 (362)
.+... ...+.++++
T Consensus 286 ~~~~~-~~~~~~~~~ 299 (300)
T TIGR03866 286 SIKVG-RLPWGVVVR 299 (300)
T ss_pred EEEcc-cccceeEeC
Confidence 66543 455777764
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=1.8e-15 Score=138.99 Aligned_cols=285 Identities=32% Similarity=0.558 Sum_probs=199.6
Q ss_pred ecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE-c--Cc-eeEEE-ec
Q 044557 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV-L--AD-KLFSA-HQ 86 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~--~~-~l~s~-~~ 86 (362)
.+.+|...+.++.+. +..++.++.|+.+.+|+....... ...+... ....+..+.. . .. .+... ..
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL-IKSLEGL------HDSSVSKLALSSPDGNSILLASSSL 132 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee-EEEEecc------CCCceeeEEEECCCcceEEeccCCC
Confidence 467899999999984 678888999999999997654201 1111110 0012222222 2 22 23333 44
Q ss_pred CCcEEEEecCC-CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC-CC
Q 044557 87 DHKIRVWKINN-QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW-DR 164 (362)
Q Consensus 87 dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-d~ 164 (362)
|+.+.+|+... .. .......|...|..++|+|+++++++++. |+
T Consensus 133 d~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 178 (466)
T COG2319 133 DGTVKLWDLSTPGK----------------------------------LIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178 (466)
T ss_pred CccEEEEEecCCCe----------------------------------EEEEEecCcccEEEEEECCCCCEEEecCCCCC
Confidence 89999999864 11 11123467888999999999999988886 99
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEE-eCCCeEEEEeCCCCCCcceeeh-hhhccccceeEEEEecC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTG-SADKKIKVWRRSPGNKKHSLVD-VLERHNSGINALALSCD 241 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~-~~dg~i~iw~~~~~~~~~~~~~-~~~~h~~~v~~i~~s~~ 241 (362)
.+++|++.....+..+. .|...+.+++++|++. ++++ +.|+.|++||...+. ... .+..|...+ ...|+|+
T Consensus 179 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~-~~~~~~~ 252 (466)
T COG2319 179 TIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK----LLRSTLSGHSDSV-VSSFSPD 252 (466)
T ss_pred ceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc----EEeeecCCCCcce-eEeECCC
Confidence 99999999877766665 5899999999999986 5544 899999999876332 222 455676665 3489999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEe--cCC
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVL--EGH 317 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l--~~h 317 (362)
+..+++++.|+.+++|+......... ...+|...+.++.+.+ ..+++++.|+.+++|+.... ...... .+|
T Consensus 253 ~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~ 327 (466)
T COG2319 253 GSLLASGSSDGTIRLWDLRSSSSLLR---TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG--KLLSSLTLKGH 327 (466)
T ss_pred CCEEEEecCCCcEEEeeecCCCcEEE---EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC--ceEEEeeeccc
Confidence 99999999999999999986543122 2267888899998876 47777999999999975432 223333 478
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...+..+.+ +.. ...+..++..|+.+++|++..
T Consensus 328 ~~~~~~~~~-~~~-------~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 328 EGPVSSLSF-SPD-------GSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred CCceEEEEE-CCC-------CCEEEEeecCCCcEEeeecCC
Confidence 888999888 421 113444447889999999854
No 161
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.9e-17 Score=139.55 Aligned_cols=300 Identities=17% Similarity=0.232 Sum_probs=198.4
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcc---cceeeeccceeEEeecceeEEEEEcC--ceeEE
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSE---LDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFS 83 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s 83 (362)
|-+.+.+|.+-|.+|.|+ +++||+|+.|..+++|+++..-.. ++..... ..|...+.++.+.. .++++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~-----~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME-----HPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc-----CccccceEEEEEccCCeeEec
Confidence 445678999999999995 789999999999999997642110 1111111 12346788888753 45999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
|..+++|.+.|+++.+.. .... . ....+.|..+..+|..+.|++.+.+
T Consensus 123 G~~~~~VI~HDiEt~qsi-------~V~~--------------------~-----~~~~~~VY~m~~~P~DN~~~~~t~~ 170 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSI-------YVAN--------------------E-----NNNRGDVYHMDQHPTDNTLIVVTRA 170 (609)
T ss_pred CCCcceeEeeecccceee-------eeec--------------------c-----cCcccceeecccCCCCceEEEEecC
Confidence 999999999998754311 0000 0 0123478888999999999999999
Q ss_pred CcEEEEECCCce-EEEeeeccC-cccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCc-c--eeehhhhccccceeEE
Q 044557 164 RTIKIWRTSDFK-CLESITNAH-DDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKK-H--SLVDVLERHNSGINAL 236 (362)
Q Consensus 164 ~~i~iwd~~~~~-~~~~~~~~h-~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~-~--~~~~~~~~h~~~v~~i 236 (362)
+.|.+||.+... ....+..+. ......+-|+|... +++.+.-+-+-+||....... . .....++.....-..+
T Consensus 171 ~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~ 250 (609)
T KOG4227|consen 171 KLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS 250 (609)
T ss_pred ceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence 999999998754 222222222 33566778998763 677888888999997643210 0 0001111111223467
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEE-eecC--ccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCC----c-
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVG-ALRG--HTKSILCMAVVSD-LVCSGSADKTIRIWRGIDR----N- 307 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~--h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~----~- 307 (362)
.|+|.|..+++--.-..-.+||+.+......... ...| ....+.+++|.++ -++|||.|=.|.+|++... .
T Consensus 251 ~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~ 330 (609)
T KOG4227|consen 251 LWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGF 330 (609)
T ss_pred eeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCc
Confidence 8999999988776666667888876443221110 0000 1234667888777 5899999999999985210 0
Q ss_pred ----------------eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 308 ----------------YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 308 ----------------~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
...+-.|.||.+-++-+.|+|- .++|+|.+-...++||.-
T Consensus 331 ~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H---------~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 331 TQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH---------NNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccCcchhhCchhheecceeEEEecccccccceeecCC---------cceEeccchhhheecccc
Confidence 0123458899999999988653 368999999999999953
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=4.2e-17 Score=135.31 Aligned_cols=270 Identities=20% Similarity=0.296 Sum_probs=177.9
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceee---eccceeEEeecc-eeEEEEEc---------CceeEEEecCCcEEEEe
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEF---LSNNNIVAVGKG-AVKSLVVL---------ADKLFSAHQDHKIRVWK 94 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~---~~~~~~~~~~~~-~v~~i~~~---------~~~l~s~~~dg~i~~w~ 94 (362)
+|.-|++-+.|..+++|++........... ......++..++ .|....+. .+..++.+.|..|++||
T Consensus 60 DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wd 139 (406)
T KOG2919|consen 60 DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWD 139 (406)
T ss_pred CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeee
Confidence 467899999999999999864322111010 001111222222 23333332 12467788999999999
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC---ceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD---AVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
.-+++...+. . ...|.+ ..-+++|+|||..|++| ..+.|+++|+
T Consensus 140 aftG~lraSy------------------~--------------~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt 186 (406)
T KOG2919|consen 140 AFTGKLRASY------------------R--------------AYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDT 186 (406)
T ss_pred ccccccccch------------------h--------------hhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeec
Confidence 8765421100 0 001222 23589999999999865 5799999998
Q ss_pred -CCceE---EEeeec---cCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 172 -SDFKC---LESITN---AHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 172 -~~~~~---~~~~~~---~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
+.++. ..++.. +..+.+.+++|+|-. .++.++....+-||.-....+ ...+.+|.++|+.+.|.++|
T Consensus 187 ~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 187 SRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred cCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc----eeeecccCCCeeeEEeccCc
Confidence 44432 122221 225568889999865 378899999999987665543 34556899999999999999
Q ss_pred CEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccc----ee-EEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 243 SVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTK----SI-LCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 243 ~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~----~v-~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
..|++|+. |-.|.+||++..... +..+..|.. +| ..++..+++|++|+.||.|++||... -+..+..+..
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~p---v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~-~gn~~sv~~~ 338 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDP---VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD-LGNEVSVTGN 338 (406)
T ss_pred CeecccccCCCeEEEEeehhccch---hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC-CCCccccccc
Confidence 99999985 778999999865433 333444543 33 24444567999999999999999643 2334566778
Q ss_pred CCCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 317 HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 317 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
|+..|+.++++|- ..++|++|.
T Consensus 339 ~sd~vNgvslnP~---------mpilatssG 360 (406)
T KOG2919|consen 339 YSDTVNGVSLNPI---------MPILATSSG 360 (406)
T ss_pred ccccccceecCcc---------cceeeeccC
Confidence 9999999998754 346666653
No 163
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2.3e-16 Score=148.86 Aligned_cols=290 Identities=21% Similarity=0.317 Sum_probs=184.1
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc----eeEEEecCCcEEEEecCCCC-CCcc
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD----KLFSAHQDHKIRVWKINNQE-PDHQ 103 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~l~s~~~dg~i~~w~~~~~~-~~~~ 103 (362)
...+++++..-.|+|||.+... ....|.... .....|+.+.+.++ .+++|+.||.||+|+--... ....
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~--~l~~F~n~~----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGR--LLNGFDNGA----FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE 1149 (1387)
T ss_pred CceeEEcCCcceEEEEecccCc--eeccccCCC----CCCCccceeeeecccchhheeeeccCceEEEecccccccCCce
Confidence 5678888888899999976532 111121110 12346677765443 38899999999999742111 0000
Q ss_pred cceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc
Q 044557 104 KYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA 183 (362)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 183 (362)
..+....+.. . ..+-.+.=.-+.|.....+|+++|+-+.|||||.....+...+-.+
T Consensus 1150 LVTaw~~Ls~---~--------------------~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1150 LVTAWSSLSD---Q--------------------LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eEEeeccccc---c--------------------CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC
Confidence 1111100000 0 0000111134566666667777777899999999988777766444
Q ss_pred CcccEEEEEEc-CCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc--eeEEEEecCCCE-EEEEcCCCcEEEEe
Q 044557 184 HDDAINAVALS-DDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG--INALALSCDGSV-LYSGACDRSIIVWE 258 (362)
Q Consensus 184 h~~~v~~v~~~-~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~--v~~i~~s~~~~~-l~s~~~d~~i~~wd 258 (362)
-...|+++.-+ +.|. +++|-.||.|++||....... ..+.....|+.. |..+.+-++|-. |++|+.||.|++||
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEe
Confidence 45556666533 3344 788999999999998765432 345556678776 889999887754 99999999999999
Q ss_pred ccCCCCcEEEEEeecCcc--c-eeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeee----EecCCCCcEEEEEeeec
Q 044557 259 KEEDDGNILVVGALRGHT--K-SILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLA----VLEGHRGPVKCLAAAID 329 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~--~-~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~----~l~~h~~~v~~~~~~~~ 329 (362)
++.... .... ....|- + .++++.... +.+|+|+. +.|+||+...+....++ .+..-...+.+++|+|-
T Consensus 1286 lR~~~~-e~~~-~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1286 LRMSSK-ETFL-TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred cccCcc-cccc-eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecch
Confidence 987321 1111 111222 2 477887764 58999999 99999986443221111 12233557799999875
Q ss_pred CCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 330 NDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 330 ~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
. .+||.|+.|.+|-||....+-
T Consensus 1363 ~---------~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1363 R---------LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred h---------HhhhhccCCceEEEeecCCcC
Confidence 3 469999999999999886553
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.9e-18 Score=161.00 Aligned_cols=233 Identities=18% Similarity=0.214 Sum_probs=172.4
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYS 159 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s 159 (362)
|+.|..||.|-+|+...... ... .. ...+...|.+.|..+.|++... +||+
T Consensus 83 IaGG~edG~I~ly~p~~~~~-~~~-----------------------~~----~la~~~~h~G~V~gLDfN~~q~nlLAS 134 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIA-NAS-----------------------EE----VLATKSKHTGPVLGLDFNPFQGNLLAS 134 (1049)
T ss_pred eeccccCCceEEecchhhcc-Ccc-----------------------hH----HHhhhcccCCceeeeeccccCCceeec
Confidence 77788999999998753200 000 00 0011235899999999999765 9999
Q ss_pred EECCCcEEEEECCCceEEEee-eccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccc--ccee
Q 044557 160 VSWDRTIKIWRTSDFKCLESI-TNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN--SGIN 234 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~~-~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~--~~v~ 234 (362)
|+.||.|.|||++..+..... .....+.|.+++|+..-. |++++.+|.+.|||++..+....+ ..+. ..+.
T Consensus 135 Ga~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l----s~~~~~~~~S 210 (1049)
T KOG0307|consen 135 GADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL----SDTPGRMHCS 210 (1049)
T ss_pred cCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc----ccCCCcccee
Confidence 999999999999875533222 223456799999997653 789999999999999865433222 2222 3578
Q ss_pred EEEEecCCC-EEEEEcCCC---cEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCCCc
Q 044557 235 ALALSCDGS-VLYSGACDR---SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 235 ~i~~s~~~~-~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~~~ 307 (362)
.+.|+|++. .|++++.|. .|.+||++..... +..+.+|...|.++.|++ ++++|++.|+.|.+|+. ++
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP---~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~--~t 285 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP---LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNP--NT 285 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCc---hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecC--CC
Confidence 899999874 566666654 4899999865443 344678999999999963 48999999999999984 34
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++.+..+-.-.+++..+.|.|... ..++.+|-||.|.|+.+..
T Consensus 286 gEvl~~~p~~~nW~fdv~w~pr~P--------~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 286 GEVLGELPAQGNWCFDVQWCPRNP--------SVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred ceEeeecCCCCcceeeeeecCCCc--------chhhhheeccceeeeeeec
Confidence 667888877788999999987632 3688899999999998854
No 165
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.7e-17 Score=135.41 Aligned_cols=276 Identities=16% Similarity=0.285 Sum_probs=177.3
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE----cCceeEEEecCCcEEEEecCCCCCCcccc
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV----LADKLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~----~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
..+|++-+.|+||+||..++. ...++.. +.+.+..+.+ .++.+++|+.||+|++||++.........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~--~l~~fk~-------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ--LLEEFKG-------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchh--hhheecC-------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 458888889999999987632 2222221 2222333333 34569999999999999997654211100
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeec-CceeEEEEecCCCEEEEEE----CCCcEEEEECCCceE-EEe
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV-DAVSALALTKDETLLYSVS----WDRTIKIWRTSDFKC-LES 179 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s----~d~~i~iwd~~~~~~-~~~ 179 (362)
+-.+. .+..|++.+..++.+++|. .|-.|.+||++..+. +..
T Consensus 112 --------------------------------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~ 159 (376)
T KOG1188|consen 112 --------------------------------WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ 159 (376)
T ss_pred --------------------------------ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh
Confidence 00111 3456666666777787775 356799999998776 777
Q ss_pred eeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-CEEEEEcCCCcEEE
Q 044557 180 ITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG-SVLYSGACDRSIIV 256 (362)
Q Consensus 180 ~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~~d~~i~~ 256 (362)
+...|.+.|++++|+|... +++|+.||-|.+||+......-.+..++ .|...|..+.|..++ +.|.+-+...+..+
T Consensus 160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~ 238 (376)
T KOG1188|consen 160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAI 238 (376)
T ss_pred hhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeE
Confidence 8888999999999999763 8899999999999987654433343333 467789999998776 46888999999999
Q ss_pred EeccCCCCcEEEEEe-ec--------CccceeEEEEEe-CCeEEEeeC-CCcEEEeeCC----CCceeeeeEecC-CCCc
Q 044557 257 WEKEEDDGNILVVGA-LR--------GHTKSILCMAVV-SDLVCSGSA-DKTIRIWRGI----DRNYTCLAVLEG-HRGP 320 (362)
Q Consensus 257 wd~~~~~~~~~~~~~-~~--------~h~~~v~~~~~~-~~~~~s~s~-D~~i~~W~~~----~~~~~~~~~l~~-h~~~ 320 (362)
|+++.+......... +. .....|.+.... .+..+.++. -+...++-.. ....+.+..|.| |.+.
T Consensus 239 ~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei 318 (376)
T KOG1188|consen 239 YELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI 318 (376)
T ss_pred EEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH
Confidence 999865432211110 00 000012222221 234444444 4556666432 122344567887 6666
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|.++.|.. .+.++.|||.||.+.+|..
T Consensus 319 VR~i~~~~---------~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 319 VRDILFDV---------KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHHHhhhc---------ccceeeccCCCceEEEEec
Confidence 66665532 1246889999999999984
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.2e-17 Score=158.82 Aligned_cols=243 Identities=21% Similarity=0.305 Sum_probs=175.5
Q ss_pred ceeeeEec--Cc----EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeEEEecCCcEE
Q 044557 21 YVSSLALA--GK----FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIR 91 (362)
Q Consensus 21 ~V~~l~~~--~~----~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~ 91 (362)
....|.|. +. .||.|..||.|-+||..........+.. .....|.+.|..+.++. +.|++|+.||.|.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l---a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL---ATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH---hhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 44667773 22 5999999999999997542100011111 11134788999998864 4699999999999
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEE
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWR 170 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd 170 (362)
+||++..+..... . . ..-.+.|.+++|+..- .+|++++.+|++.|||
T Consensus 143 iWDlnn~~tP~~~--~--~----------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 143 IWDLNKPETPFTP--G--S----------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred EeccCCcCCCCCC--C--C----------------------------CCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 9999864321000 0 0 1124578899998654 5799999999999999
Q ss_pred CCCceEEEeeeccC-cccEEEEEEcCCCc--EEEEeCCC---eEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-C
Q 044557 171 TSDFKCLESITNAH-DDAINAVALSDDGD--VYTGSADK---KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG-S 243 (362)
Q Consensus 171 ~~~~~~~~~~~~~h-~~~v~~v~~~~~~~--~~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~ 243 (362)
++..+.+-.+...- ...+..++|+|++. +++++.|. .|.+||++... +....+..|..+|.++.|++.+ .
T Consensus 191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---CchhhhcccccceeeeccCCCCch
Confidence 99887665554211 12467899999984 66666543 69999987654 2345567899999999999965 8
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCC
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~ 305 (362)
+|++++.|++|.+|+.++++ +++.+......+..+.|.+ ..++.+|-||.|.|+.+..
T Consensus 268 lllSsgkD~~ii~wN~~tgE----vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 268 LLLSSGKDNRIICWNPNTGE----VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hhhcccCCCCeeEecCCCce----EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 99999999999999987643 5677777778888888875 4899999999999998543
No 167
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=3.2e-16 Score=149.97 Aligned_cols=266 Identities=17% Similarity=0.253 Sum_probs=162.4
Q ss_pred eccceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCcee
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKL 81 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l 81 (362)
+-+.++++|..|...|..++.+ +.+++|||.||+||+||.....++... ... ..........+.++.. .++.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s-~rS-~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS-ARS-ELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce-eee-eEEEeccCCceEEEEeccCCCeE
Confidence 4466888999999999998884 579999999999999997653322110 000 0111112334555543 46679
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEE-EEec-CCC-EEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSAL-ALTK-DET-LLY 158 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~-~~~-~l~ 158 (362)
+.++.||.|++.+++.....+...... ..+. ....+.+..| +|.. ... .|+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~-ri~n-------------------------~~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQV-RIPN-------------------------LKKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeee-eccc-------------------------ccCCCceEEeecccccccceeEE
Confidence 999999999999987522110000000 0000 0011122222 2322 223 677
Q ss_pred EEECCCcEEEEECCCceEEEeee-ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
.+...+.|..||++.......+. ..-.+.|++++.+|.+. ++.|+..|.+.+||+.-.....+. ...+..++..+
T Consensus 1168 y~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw---~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW---EHPARAPIRHV 1244 (1431)
T ss_pred EEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc---cCcccCCcceE
Confidence 78888999999998754332222 12346899999999987 889999999999999876544332 23455788888
Q ss_pred EEecC---CCEEEEEc--CCCcEEEEeccCCCCcEEEEEe---------ecC------cc-ceeEEEEE-eCCeEEEeeC
Q 044557 237 ALSCD---GSVLYSGA--CDRSIIVWEKEEDDGNILVVGA---------LRG------HT-KSILCMAV-VSDLVCSGSA 294 (362)
Q Consensus 237 ~~s~~---~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~---------~~~------h~-~~v~~~~~-~~~~~~s~s~ 294 (362)
..+|. ....++++ ..+.|.+|+++.+......... +.. +. ..+.|.-. .+.++.+|+.
T Consensus 1245 ~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs 1324 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS 1324 (1431)
T ss_pred EeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC
Confidence 87763 34555555 4678999999876543322211 000 00 11122111 2348999999
Q ss_pred CCcEEEeeC
Q 044557 295 DKTIRIWRG 303 (362)
Q Consensus 295 D~~i~~W~~ 303 (362)
|..||.||.
T Consensus 1325 d~kIR~wD~ 1333 (1431)
T KOG1240|consen 1325 DMKIRKWDP 1333 (1431)
T ss_pred ccceeeccC
Confidence 999999984
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.7e-16 Score=127.84 Aligned_cols=268 Identities=17% Similarity=0.307 Sum_probs=174.9
Q ss_pred eeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCC
Q 044557 22 VSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINN 97 (362)
Q Consensus 22 V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~ 97 (362)
-.++.|+ |.+||.|..||.|-+||+.+.. -.+++..|..+++++.++.+ +|++++.|-.|.+||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc---------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 5677775 8999999999999999987632 13345567789999999865 599999999999999987
Q ss_pred CCCCcc-----cceeeeeccCCCchhhhhcccccccee-eeeeeeEEeee------cCceeEEEEecCCCEEEEEECCCc
Q 044557 98 QEPDHQ-----KYTRLATLPTLGDRAIKLLMPKNHVQI-RRHKTCTWVHH------VDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 98 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
+.+.+. ++.....+|....+.+...+...-..+ ........... .....+..|.+.|+++++|...|.
T Consensus 97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 764332 122233334333333222222111100 00011111110 112233458899999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc-----ceeehhhhc--cccceeEEE
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK-----HSLVDVLER--HNSGINALA 237 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~-----~~~~~~~~~--h~~~v~~i~ 237 (362)
+-++|..+.+++..+...-...|..+.++..|. ++.-+.|+.||.|+...-... ......++. .+..-.+++
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 999999999998877644447899999999887 778899999999987631100 011111111 123446789
Q ss_pred EecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 238 LSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 238 ~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
|+.||.|++.++. --.+++|....+. ++..+.|.. .....+.|.+- .+++- ..|.|++|..
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~Gs----LVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGS----LVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcc----eeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 9999999988874 3468999866533 445566655 34566777653 45555 6689999963
No 169
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.5e-16 Score=131.60 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=138.2
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
..|+.|++.|.+||+|+.||.|-|||+.++..-+.+ .+|..+|.+++|+++|+ |+|++.|..|++||+..+...+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri- 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI- 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-
Confidence 689999999999999999999999999998755544 58999999999999997 889999999999999988754433
Q ss_pred hhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeE-EEEE--eCCeEEEeeCCCcE
Q 044557 224 DVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSIL-CMAV--VSDLVCSGSADKTI 298 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~-~~~~--~~~~~~s~s~D~~i 298 (362)
..+++|....|+|-....+ +.-.+..-.+-++..+.. ..+.. -.+....+. +..| .++++++|...|.+
T Consensus 104 ----rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl 177 (405)
T KOG1273|consen 104 ----RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL 177 (405)
T ss_pred ----EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence 3578999999998443222 222233333333332111 11110 011111111 1123 36799999999999
Q ss_pred EEeeCCCCceeeeeEecCCC-CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 299 RIWRGIDRNYTCLAVLEGHR-GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+++.. +.+|++.+.--+ ..|..+.|+..+ ..|+.-..|..||.+++.
T Consensus 178 lv~~a~--t~e~vas~rits~~~IK~I~~s~~g---------~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 178 LVYDAE--TLECVASFRITSVQAIKQIIVSRKG---------RFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EEEecc--hheeeeeeeechheeeeEEEEeccC---------cEEEEecCCceEEEEehh
Confidence 999953 467887776555 678888876543 457788889999999985
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=5.4e-16 Score=131.94 Aligned_cols=201 Identities=18% Similarity=0.320 Sum_probs=141.1
Q ss_pred EeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCce-------EEEeeeccCcccEEEEEEcCCCc--EEEEeCCCe
Q 044557 138 WVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFK-------CLESITNAHDDAINAVALSDDGD--VYTGSADKK 207 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~ 207 (362)
+.+|+++|..++|+| +...+|+||+|.+|.||++...- .+..+ .+|...|..|+|+|.-. |++++.|.+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccchhhHhhccCCce
Confidence 357999999999998 56789999999999999986532 23333 48999999999999764 889999999
Q ss_pred EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce--eEEEEEe
Q 044557 208 IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS--ILCMAVV 285 (362)
Q Consensus 208 i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~--v~~~~~~ 285 (362)
|.+|++.+++...+ +. |+.-|.++.|+.||.+|++.+.|..||+||.+.+. ++..-.+|.+. ...+-..
T Consensus 156 v~iWnv~tgeali~----l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~----~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT----LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT----VVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred EEEEeccCCceeee----cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc----EeeecccccCCCcceeEEec
Confidence 99999999874332 23 99999999999999999999999999999988643 22233456542 2333222
Q ss_pred CCeEEEee----CCCcEEEeeCCC-CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 286 SDLVCSGS----ADKTIRIWRGID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 286 ~~~~~s~s----~D~~i~~W~~~~-~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
...++|.+ .++.+-+|+-.. ...-...+|..-+ .|. +-|- ..++.-+-+.|-.|+.||.+.+.
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl-~PFy-------D~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVL-LPFY-------DPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cCceeeeccccccccceeccCcccccCcceeEEeccCC-ceE-Eeee-------cCCCCEEEEEecCCcceEEEEec
Confidence 22244433 688999998422 1112234454333 332 1221 12333444578889999999984
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.2e-16 Score=131.02 Aligned_cols=255 Identities=15% Similarity=0.224 Sum_probs=161.1
Q ss_pred cceeeecccCccceeeeEec----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc-CceeEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL-ADKLFS 83 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~l~s 83 (362)
.+.++.+++|.+.+..+.|. +..+.+|+.||+||+||+..........+..+. ..+..+++.. ...++.
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~------~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS------GTPFICLDLNCKKNIIA 133 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC------CCcceEeeccCcCCeEE
Confidence 66888999999999999993 468999999999999998764432221111110 1234444443 223333
Q ss_pred Ee-----cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEE
Q 044557 84 AH-----QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLL 157 (362)
Q Consensus 84 ~~-----~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l 157 (362)
++ .|..|.+||++..... +.. -...|.+.|+++.|+|.. ++|
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~qq~------l~~--------------------------~~eSH~DDVT~lrFHP~~pnlL 181 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQQL------LRQ--------------------------LNESHNDDVTQLRFHPSDPNLL 181 (376)
T ss_pred eccccccCceEEEEEEeccccch------hhh--------------------------hhhhccCcceeEEecCCCCCeE
Confidence 32 4678999999754310 000 012488999999999965 689
Q ss_pred EEEECCCcEEEEECCCceE----EEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehh-h----
Q 044557 158 YSVSWDRTIKIWRTSDFKC----LESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDV-L---- 226 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~----~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~-~---- 226 (362)
++||-||.|.|+|++.... +..+ .|...|.++.|..++ ++...+.+++..+|+++.+.....+... .
T Consensus 182 lSGSvDGLvnlfD~~~d~EeDaL~~vi--N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEEDALLHVI--NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred EeecccceEEeeecCCCcchhhHHHhh--cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 9999999999999976532 2222 366779999999888 6889999999999999887643222110 0
Q ss_pred --h-ccccceeEEEEecCCCEEEEEcC-CCcEEEEeccC--CCCcEEEEEeecC-ccceeEEEEEe--CCeEEEeeCCCc
Q 044557 227 --E-RHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEE--DDGNILVVGALRG-HTKSILCMAVV--SDLVCSGSADKT 297 (362)
Q Consensus 227 --~-~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~--~~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~s~s~D~~ 297 (362)
+ ..-..+-......+....+.++. -|...++-+.. .......+..+.+ |..-|+++.|. .+++.||++||.
T Consensus 260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 0 00011111111224455555555 55666554331 1111122233445 55556666653 569999999999
Q ss_pred EEEeeC
Q 044557 298 IRIWRG 303 (362)
Q Consensus 298 i~~W~~ 303 (362)
+.+|+.
T Consensus 340 l~~Wk~ 345 (376)
T KOG1188|consen 340 LQAWKV 345 (376)
T ss_pred EEEEec
Confidence 999983
No 172
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=2.9e-15 Score=138.53 Aligned_cols=273 Identities=14% Similarity=0.176 Sum_probs=181.2
Q ss_pred CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc---CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCC
Q 044557 38 DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL---ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTL 114 (362)
Q Consensus 38 Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 114 (362)
++.+.+|++..... . + ........+.++.+. ++.++.|+.+|.|.+||+........ ..+
T Consensus 221 ~~~~~vW~~~~p~~-P--e------~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~--s~l------ 283 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNT-P--E------LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP--SGL------ 283 (555)
T ss_pred CceEEEEecCCCCC-c--e------EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC--ccc------
Confidence 45899999875421 1 1 111224466666654 46699999999999999976542110 000
Q ss_pred CchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC--CEEEEEECCCcEEEEECCCceEE-Ee-----ee-----
Q 044557 115 GDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE--TLLYSVSWDRTIKIWRTSDFKCL-ES-----IT----- 181 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~-~~-----~~----- 181 (362)
......|.+++..+.|..+. .-|+++|.||.|..|+++...+. .. ..
T Consensus 284 --------------------s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~ 343 (555)
T KOG1587|consen 284 --------------------SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQ 343 (555)
T ss_pred --------------------ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccc
Confidence 00112477888888886544 34899999999999988654321 11 10
Q ss_pred ccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCc----ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 182 NAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKK----HSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 182 ~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~----~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
..-...+++++|.+.. .++.|+.+|.|.-=........ .+.......|.++|.++.++|=+..++..+.|-+++
T Consensus 344 ~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vr 423 (555)
T KOG1587|consen 344 SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVR 423 (555)
T ss_pred cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeE
Confidence 0112357889998765 4899999999877333222211 122334556889999999999776666555599999
Q ss_pred EEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc
Q 044557 256 VWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
+|+....... +-.+..+...+++++|++. .++++..||.+.+||+..+...++.+..-+......+.+
T Consensus 424 iWs~~~~~~P---l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~------ 494 (555)
T KOG1587|consen 424 IWSEDVIASP---LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW------ 494 (555)
T ss_pred eccccCCCCc---chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec------
Confidence 9987632222 2234567778999999864 799999999999999866655556555545444444444
Q ss_pred cCCCCCceEEEecCCCCcEEEEecccC
Q 044557 333 CDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 333 ~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
++.+++|+.|..-|++.+|++.-.
T Consensus 495 ---s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 495 ---SPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ---CCCCcEEEEecCCCcEEEEEcCch
Confidence 344678999999999999999643
No 173
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.3e-15 Score=131.95 Aligned_cols=243 Identities=12% Similarity=0.216 Sum_probs=170.1
Q ss_pred cceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 68 ~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
.+.++++.+-+. -+++++.|+++++|.++..... . ...+..-.-+|
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~------------------------------lqS~~l~~fPi 260 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--K------------------------------LQSIHLEKFPI 260 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--h------------------------------heeeeeccCcc
Confidence 457778877654 4899999999999998753311 0 11111223578
Q ss_pred eEEEEecCCC-EEEEEECCCcEEEEECCCceEEE--eeeccC-cccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 146 SALALTKDET-LLYSVSWDRTIKIWRTSDFKCLE--SITNAH-DDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 146 ~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~--~~~~~h-~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.++.|.|+|. .+++++.-..+..||+.+.+..+ .+. ++ ...+....+++++. ++..+..|.|.+....+++...
T Consensus 261 ~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~-g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~ 339 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY-GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT 339 (514)
T ss_pred ceeeecCCCceEEEecccceEEEEeeccccccccccCCC-CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh
Confidence 8999999998 89999999999999998876432 121 22 23466677889887 7789999999998777665333
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEeCCeEEEeeCCCcEE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVVSDLVCSGSADKTIR 299 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~s~s~D~~i~ 299 (362)
++ + -.+.|..+.|+.|++.|++.+.+|.|.+||++.... .....-.|.. +.-.|++..+.++|+||.-|.|.
T Consensus 340 s~----K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~--~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 340 SF----K-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC--LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred ee----e-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce--EEEEeecCccceeeeeecCCCceEEeccCcceEE
Confidence 22 1 356799999999999999999999999999986522 1111112211 11234455677999999999999
Q ss_pred EeeCC----CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 300 IWRGI----DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 300 ~W~~~----~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
||+.. ....++++.+..-...|+.++|+++.+-. -|+|-..+..+|+=.++
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL-------AiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL-------AIASRVKKNALRLVHVP 467 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh-------hhhhhccccceEEEecc
Confidence 99842 24456777777778899999998775421 13344455667776654
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=1.1e-17 Score=154.06 Aligned_cols=238 Identities=22% Similarity=0.357 Sum_probs=176.4
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCC
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDH 88 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg 88 (362)
-++.|.||-..|.|+.|+ |.+++||+.|..+|||..+++. + +
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~--~---------------------------l------- 225 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR--C---------------------------L------- 225 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh--h---------------------------h-------
Confidence 445688999999999995 8999999999999999854421 0 0
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
.+..+|.+.|+.++.+.+..+++++|.|..|++
T Consensus 226 -----------------------------------------------As~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 226 -----------------------------------------------ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred -----------------------------------------------ccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 001257788888999888889999999999999
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh-hccccceeEEEEecCCCEEEE
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL-ERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~h~~~v~~i~~s~~~~~l~s 247 (362)
|.+.++..+..+ .+|+++|++++|+|- .+.+.||++++||..-. ........+ .....-+.++.|..++...+|
T Consensus 259 Wrl~~~~pvsvL-rghtgavtaiafsP~---~sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 259 WRLPDGAPVSVL-RGHTGAVTAIAFSPR---ASSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EecCCCchHHHH-hccccceeeeccCcc---ccCCCCCceEecccccc-ccccCCCCCCcccccceeeeecccccccccc
Confidence 999999887765 489999999999984 47889999999997611 110000000 012345677888888999999
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEE
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL 324 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~ 324 (362)
++.|+.-..|..... ..+...+.-+..+ ..+.+++-.+..+.+|+.. .+.+.+.+.+|...+..+
T Consensus 334 gs~d~ea~n~e~~~l----------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~--~g~l~H~l~ghsd~~yvL 401 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQL----------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY--TGQLLHNLMGHSDEVYVL 401 (1113)
T ss_pred ccCCcccccchhhHh----------hhhccceEEEeccccccccceeeeeeeEeeeeecc--cchhhhhhcccccceeee
Confidence 999999888865421 1122222222222 1356677778888999853 466788999999999999
Q ss_pred EeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 325 AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.++|... .+..+++.||.+.|||+
T Consensus 402 d~Hpfn~--------ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 402 DVHPFNP--------RIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred eecCCCc--------HhhhhccCCCceEeeec
Confidence 9998643 35679999999999998
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.71 E-value=1.6e-13 Score=125.96 Aligned_cols=289 Identities=33% Similarity=0.514 Sum_probs=191.5
Q ss_pred eeeecccCcc-ceeeeEe---cCc-EEEEecC-CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eE
Q 044557 11 CLTTLKGHNS-YVSSLAL---AGK-FLYTGSS-DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LF 82 (362)
Q Consensus 11 ~~~tl~gH~~-~V~~l~~---~~~-~l~t~s~-Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~ 82 (362)
.+..+.++.. .+..+.+ .+. +++..+. |+.+++|+...... . ......+...+..+.+.++. ++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-------~~~~~~~~~~v~~~~~~~~~~~~~ 171 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-L-------IRTLEGHSESVTSLAFSPDGKLLA 171 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-E-------EEEEecCcccEEEEEECCCCCEEE
Confidence 4555666443 5666655 244 4555444 99999999764100 0 11223345566677776554 66
Q ss_pred EEec-CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEE
Q 044557 83 SAHQ-DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSV 160 (362)
Q Consensus 83 s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~ 160 (362)
+++. |+.+++|++..... ...+..|...+.+++++|++. .++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 172 SGSSLDGTIKLWDLRTGKP----------------------------------LSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred ecCCCCCceEEEEcCCCce----------------------------------EEeeccCCCceEEEEEcCCcceEEEEe
Confidence 6664 99999999865211 011224778899999999998 66666
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
+.|+.|++||...+..+......|.... ...|+|++. +++++.|+.+++|+...... ... ....|...|.++.|.
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~-~~~~~~~~v~~~~~~ 293 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLR-TLSGHSSSVLSVAFS 293 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEE-EEecCCccEEEEEEC
Confidence 9999999999887776663334676664 337999885 77899999999999876543 111 115678899999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEe-eCCCcEEEeeCCCCceeeeeEecC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSG-SADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~-s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
|++..+++++.|+.+++|+........ ... ...|...+..+.+.+ ..++.+ ..|+.+++|+..... .......
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~ 369 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGKLLS-SLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--PLKTLEG 369 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCceEE-Eee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc--eeEEecC
Confidence 999999999999999999876543211 111 236777777777732 345444 788999999865433 2333333
Q ss_pred CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 317 HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 317 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+.. +..+.+.+ . . .....++.++.+++|+....
T Consensus 370 ~~~-~~~~~~~~-~-~-------~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 370 HSN-VLSVSFSP-D-G-------RVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred Cce-EEEEEECC-C-C-------CEEEEecCCCceEEEecccC
Confidence 332 77777754 2 2 22334789999999998654
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=1.4e-16 Score=132.52 Aligned_cols=207 Identities=17% Similarity=0.281 Sum_probs=155.7
Q ss_pred CceeEEEEecC----CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCC
Q 044557 143 DAVSALALTKD----ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 143 ~~v~~~~~~~~----~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~ 216 (362)
+....++|+-+ ..++|.|+.-|.|+|.|+.++++...+. +|..+|+.+.+.|.. .+++++.|..||+|++++.
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 33444455432 4588999999999999999998887775 899999999999987 4889999999999999987
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC--------------CcE----------EEEEee
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD--------------GNI----------LVVGAL 272 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~--------------~~~----------~~~~~~ 272 (362)
.... .+.-..+|...|-++.|+++|.+|+++|.|.++++|++...+ +.. -...+-
T Consensus 169 ~Cv~-VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 169 VCVA-VFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred eEEE-EecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 6542 345567899999999999999999999999999999986211 000 001122
Q ss_pred cCccceeEEEEEeCCeEEEeeCCCcEEEeeCC---CC-----c----eeeeeEecCCCCcEEEEEeeecCCccCCCCCce
Q 044557 273 RGHTKSILCMAVVSDLVCSGSADKTIRIWRGI---DR-----N----YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSY 340 (362)
Q Consensus 273 ~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~---~~-----~----~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~ 340 (362)
.-|...|.|+.|-+++++|=|-++.|..|+.. +. . ...+..+.--+-.||-+.|.-+ +-+.
T Consensus 248 diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d-------~~~~ 320 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD-------PWQK 320 (385)
T ss_pred ccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec-------HHHH
Confidence 35888899999989999999999999999741 10 0 1112334434556777777543 4456
Q ss_pred EEEecCCCCcEEEEeccc
Q 044557 341 LVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 341 ~l~s~s~D~~i~~W~~~~ 358 (362)
+||.|...|.|.+||+..
T Consensus 321 ~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 321 MLALGNQSGKVYVWDLDN 338 (385)
T ss_pred HHhhccCCCcEEEEECCC
Confidence 799999999999999964
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.71 E-value=4.4e-16 Score=140.56 Aligned_cols=246 Identities=20% Similarity=0.325 Sum_probs=177.8
Q ss_pred ccceeeecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 8 DHHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
+..++.+|+||.+.|.++++ +|+.+|||+.|..|.+|.-..
T Consensus 42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl------------------------------------- 84 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL------------------------------------- 84 (1081)
T ss_pred CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-------------------------------------
Confidence 45678899999999999999 488999999999999996210
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.|.++ ..|.+.|.||.|+|-...|++|+- ..
T Consensus 85 -EG~Lk-----------------------------------------------YSH~D~IQCMsFNP~~h~LasCsL-sd 115 (1081)
T KOG1538|consen 85 -EGILK-----------------------------------------------YSHNDAIQCMSFNPITHQLASCSL-SD 115 (1081)
T ss_pred -cceee-----------------------------------------------eccCCeeeEeecCchHHHhhhcch-hh
Confidence 12221 137888999999999999998874 45
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC--
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG-- 242 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-- 242 (362)
.-+|......... ..-...+.+++|..||+ ++.|-.||+|.+-+.. +++. ..+....+.+.+|.+++|+|..
T Consensus 116 FglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek-~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 116 FGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK-VKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred ccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc-eEEeCCCCCCCCceEEEecCCCCC
Confidence 6788766443221 11234577888999998 6678899999987543 3322 2334445578899999999853
Q ss_pred ---CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 243 ---SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 243 ---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
..++......++.+|.+... .++.-+.-.-...|+.+. +++++.|+.|+.+++|. +.+..+.++-..
T Consensus 191 G~~di~aV~DW~qTLSFy~LsG~-----~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT---R~GvrLGTvg~~ 262 (1081)
T KOG1538|consen 191 GRNDILAVADWGQTLSFYQLSGK-----QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT---RDGVRLGTVGEQ 262 (1081)
T ss_pred CccceEEEEeccceeEEEEecce-----eecccccCCCCchhheeccCCcEEEEccCCCceEEEe---ecCeEEeecccc
Confidence 47788888888888877521 222212222234577764 56999999999999995 455667777667
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCcc
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLV 361 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~~ 361 (362)
..+||.++..|+++ +++.|..||+|--+++.+.|+
T Consensus 263 D~WIWtV~~~PNsQ---------~v~~GCqDGTiACyNl~fSTV 297 (1081)
T KOG1538|consen 263 DSWIWTVQAKPNSQ---------YVVVGCQDGTIACYNLIFSTV 297 (1081)
T ss_pred ceeEEEEEEccCCc---------eEEEEEccCeeehhhhHHhHh
Confidence 78999999987754 588999999999999987765
No 178
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=4.7e-16 Score=125.73 Aligned_cols=147 Identities=19% Similarity=0.337 Sum_probs=110.1
Q ss_pred EEEEeCCCeEEEEeCCCCCCcc------eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEee
Q 044557 199 VYTGSADKKIKVWRRSPGNKKH------SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGAL 272 (362)
Q Consensus 199 ~~s~~~dg~i~iw~~~~~~~~~------~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 272 (362)
+++|-++|.|.+||+.++.... +.......|..+|.++.+.+.-..=++|+.+..+..|++....+.+.+-...
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 5678899999999998863221 1233345689999999999877777888888889999887543333221111
Q ss_pred cCcccee--EEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc
Q 044557 273 RGHTKSI--LCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD 350 (362)
Q Consensus 273 ~~h~~~v--~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~ 350 (362)
.-....| ..+..++..+||++.|+.||+|.. ++..+++.|.-|+..|+++||+|+- .++|+||.|++
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVysw--rtl~pLAVLkyHsagvn~vAfspd~---------~lmAaaskD~r 316 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSW--RTLNPLAVLKYHSAGVNAVAFSPDC---------ELMAAASKDAR 316 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEe--ccCCchhhhhhhhcceeEEEeCCCC---------chhhhccCCce
Confidence 1111223 345556679999999999999985 4677899999999999999999863 47999999999
Q ss_pred EEEEec
Q 044557 351 IKVWQI 356 (362)
Q Consensus 351 i~~W~~ 356 (362)
|-+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 179
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.7e-15 Score=135.17 Aligned_cols=207 Identities=15% Similarity=0.224 Sum_probs=151.3
Q ss_pred eEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeC
Q 044557 136 CTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRR 213 (362)
Q Consensus 136 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~ 213 (362)
..+.+|++.|++++..|.|.+|++|+.||+||||.+.+++|+..+. ..+.|.||+|+|.+. +++++.+..+.|-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 3456899999999999999999999999999999999999999886 456899999999875 455444444555443
Q ss_pred CCCC---------------------------------CcceeehhhhccccceeEEEEecCCCEEEEEcCCC---cEEEE
Q 044557 214 SPGN---------------------------------KKHSLVDVLERHNSGINALALSCDGSVLYSGACDR---SIIVW 257 (362)
Q Consensus 214 ~~~~---------------------------------~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---~i~~w 257 (362)
.-|. ....-+...-.|..+|+++.|+..|.||++...|+ .|.+.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 2220 00000011224788999999999999999887653 57788
Q ss_pred eccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCC
Q 044557 258 EKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDS 335 (362)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~ 335 (362)
++..... ...+.--.+.|.++.|.+. +++.++. +.||+|++.. ..+++.|..-...|..++++|.+++
T Consensus 552 QLSK~~s----Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k--qelvKkL~tg~kwiS~msihp~GDn--- 621 (733)
T KOG0650|consen 552 QLSKRKS----QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK--QELVKKLLTGSKWISSMSIHPNGDN--- 621 (733)
T ss_pred ecccccc----cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhH--HHHHHHHhcCCeeeeeeeecCCCCe---
Confidence 8764321 1233334556788888764 4555544 6799999653 4557777777889999999988764
Q ss_pred CCCceEEEecCCCCcEEEEecccCc
Q 044557 336 SDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 336 ~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
|+.||.|+.+..+|++..+
T Consensus 622 ------li~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 622 ------LILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred ------EEEecCCCeeEEEEcccCc
Confidence 7789999999999997654
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=6e-16 Score=134.97 Aligned_cols=296 Identities=24% Similarity=0.338 Sum_probs=198.4
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeE---EEEEcCc-eeEEE
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK---SLVVLAD-KLFSA 84 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~---~i~~~~~-~l~s~ 84 (362)
+...|.+|.+.|..|.|. |..++|||.|..|.+||-......+. +. ..|...+. -|.+.++ .++++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~------SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FE------SGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cc------cccccchhhhhccCCCCCcCceec
Confidence 455688999999999994 89999999999999999765432221 11 11222221 1222333 38899
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEECC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSWD 163 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d 163 (362)
+.||.+++=.+....... .+.....|.++|.-++.-|+.. -|.++++|
T Consensus 206 s~dgqvr~s~i~~t~~~e-------------------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD 254 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVE-------------------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGED 254 (559)
T ss_pred cccCceeeeeecccccee-------------------------------cceecccccCccceeeecCCCCCcccccccc
Confidence 999999987653221100 0111235778888888888764 59999999
Q ss_pred CcEEEEECCCceEEEeee--ccCcc---cEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCc--ceeehhh-h-----c
Q 044557 164 RTIKIWRTSDFKCLESIT--NAHDD---AINAVALSDDG--DVYTGSADKKIKVWRRSPGNKK--HSLVDVL-E-----R 228 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~--~~h~~---~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~--~~~~~~~-~-----~ 228 (362)
+.+.-.|++....-..+. ..+.. ....++..|-. .+++++.|..+++||....... ...+..+ . .
T Consensus 255 ~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d 334 (559)
T KOG1334|consen 255 AVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVED 334 (559)
T ss_pred cceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccccc
Confidence 999999988764322221 12222 34677777765 4889999999999986543211 0001111 1 2
Q ss_pred cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC------c--EEEEEe-ecCccce--eEEEEEeC---CeEEEeeC
Q 044557 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG------N--ILVVGA-LRGHTKS--ILCMAVVS---DLVCSGSA 294 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~------~--~~~~~~-~~~h~~~--v~~~~~~~---~~~~s~s~ 294 (362)
..-.|++++|+.++.-|+++-.|-.|+++...-+.+ . ...+.. ++||... |..+.|-+ ++++|||.
T Consensus 335 ~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 335 DPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred CcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc
Confidence 234689999998888888888899999996433222 0 012222 6788754 67777743 59999999
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
-|.|-||+ ....+.+.-++|-..-|+||.=+ |-..+|||.|-|.-||||--
T Consensus 415 CGhIFiW~--K~t~eii~~MegDr~VVNCLEpH---------P~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 415 CGHIFIWD--KKTGEIIRFMEGDRHVVNCLEPH---------PHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cceEEEEe--cchhHHHHHhhcccceEeccCCC---------CCCchhhccCCccceeeecC
Confidence 99999998 34456666777766688887543 44568999999999999965
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=1.4e-13 Score=123.39 Aligned_cols=277 Identities=14% Similarity=0.224 Sum_probs=158.1
Q ss_pred EEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe-cCCcEEEEecCCCCCCcccceee
Q 044557 32 LYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH-QDHKIRVWKINNQEPDHQKYTRL 108 (362)
Q Consensus 32 l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~ 108 (362)
.++...|+.|++||+.+. ..+. .. ..+. ..+....+.+.++ .|+.++ .++.|..|+++.... ....
T Consensus 5 y~~~~~~~~I~~~~~~~~-g~l~--~~---~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~----l~~~ 73 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE-GALT--LL---QVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA----LTFA 73 (330)
T ss_pred EEEcCCCCCEEEEEECCC-Ccee--ee---eEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc----eEEe
Confidence 344577999999998532 1111 00 0011 1123445555544 466654 578899998862110 0000
Q ss_pred eeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC-CCcEEEEECCCc-e---EEEeeecc
Q 044557 109 ATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW-DRTIKIWRTSDF-K---CLESITNA 183 (362)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-d~~i~iwd~~~~-~---~~~~~~~~ 183 (362)
... ...+....++++|++++|++++. ++.|.+|++++. . .+..+ .
T Consensus 74 ~~~----------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~ 123 (330)
T PRK11028 74 AES----------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--E 123 (330)
T ss_pred eee----------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--c
Confidence 000 01123457899999998888764 789999998642 1 22222 2
Q ss_pred CcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcce---eehhhhccccceeEEEEecCCCEEEEEcC-CCcEEEE
Q 044557 184 HDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHS---LVDVLERHNSGINALALSCDGSVLYSGAC-DRSIIVW 257 (362)
Q Consensus 184 h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~---~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~w 257 (362)
+......++++|+++ + ++...++.|.+||+.+...... ...... .......++|+|+|++++++.. +++|.+|
T Consensus 124 ~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~ 202 (330)
T PRK11028 124 GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVW 202 (330)
T ss_pred CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEE
Confidence 223456788999987 4 3555679999999976321110 000011 1234567999999999988876 8999999
Q ss_pred eccCCCCcEEEEEeecCc------cceeEEEEEeCC--eEEEe-eCCCcEEEeeCCCCc--eeeeeEecCCCCcEEEEEe
Q 044557 258 EKEEDDGNILVVGALRGH------TKSILCMAVVSD--LVCSG-SADKTIRIWRGIDRN--YTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 258 d~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~--~~~s~-s~D~~i~~W~~~~~~--~~~~~~l~~h~~~v~~~~~ 326 (362)
++....+....+..+..+ ......+.++++ +++++ ..++.|.+|+..... .+.++..... .....+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~ 281 (330)
T PRK11028 203 QLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNI 281 (330)
T ss_pred EEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEE
Confidence 997433333333333221 112234666654 56555 457899999864322 1222222111 23445666
Q ss_pred eecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 327 AIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 327 ~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+|++. +++++...+++|.+|+++.+
T Consensus 282 ~~dg~--------~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 282 DHSGK--------YLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CCCCC--------EEEEEEccCCcEEEEEEcCC
Confidence 65543 45555556899999988643
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.5e-14 Score=130.48 Aligned_cols=292 Identities=20% Similarity=0.296 Sum_probs=197.9
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRV 92 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~ 92 (362)
.|+-.+++++++ ++++|+|..||.|.+|.-...+ .. ......++.|...|.++.++.+ +|++|+..+.+-+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~--~~---~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS--DD---SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc--cc---cccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence 466667777774 7899999999999999632210 11 1123456677778999988755 5999999999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
|.+.+++.. .+|+ -..+|..+.++||+.+.+...+|+.|.+-...
T Consensus 278 Wq~~T~~kq--------fLPR---------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 278 WQLETGKKQ--------FLPR---------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EeecCCCcc--------cccc---------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 998765421 1121 23567889999999999999999999999876
Q ss_pred CceEEEeee---c-------cCcccEEEEEEcC-CCcEEEEeCCCeEEEEeCCCCCCcceeehhhh-------cccccee
Q 044557 173 DFKCLESIT---N-------AHDDAINAVALSD-DGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE-------RHNSGIN 234 (362)
Q Consensus 173 ~~~~~~~~~---~-------~h~~~v~~v~~~~-~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------~h~~~v~ 234 (362)
+......+. . ...+-.+.++++| .+.++-.+..|.|.+||+.+......+..... .+.-+++
T Consensus 323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~it 402 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGIT 402 (792)
T ss_pred chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeee
Confidence 544322221 1 1233456788888 45577788999999999987654433321111 2344677
Q ss_pred EEEEecCCCEEEEE--------cCCC--cEEEEeccCCCCcEEEEEe-ecCccceeEEEEEe----CCeEEEeeCCCcEE
Q 044557 235 ALALSCDGSVLYSG--------ACDR--SIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVV----SDLVCSGSADKTIR 299 (362)
Q Consensus 235 ~i~~s~~~~~l~s~--------~~d~--~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~----~~~~~s~s~D~~i~ 299 (362)
+++.+..|.+++|. ..|| .+++|-.........+... ..-|...+...++. .++.+|+|.||.+|
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 88888889999887 2333 4678977655444433222 22366555444442 23899999999999
Q ss_pred EeeCC--------CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 300 IWRGI--------DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 300 ~W~~~--------~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+|-+. ...+.|.+.=.-|..++.+++|+.+|. +++.|.|++|.+||...
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs----------lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS----------LLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc----------EEEEecCCEEEEecCCC
Confidence 99641 123555554445888999998876652 55777899999999865
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.67 E-value=2.3e-14 Score=119.21 Aligned_cols=196 Identities=20% Similarity=0.306 Sum_probs=139.3
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeee-ccCcc---cEEEEEEcCCCcEEEEeCCCeEEEEeC-CCCCCcceeehh
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESIT-NAHDD---AINAVALSDDGDVYTGSADKKIKVWRR-SPGNKKHSLVDV 225 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~h~~---~v~~v~~~~~~~~~s~~~dg~i~iw~~-~~~~~~~~~~~~ 225 (362)
.|+.+++++.+.|.-|++||.-+++....+. ..|.+ +..+++|+|||.-+-++....|++||+ .++..-......
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhh
Confidence 4788899999999999999999887644332 01222 456899999999777788999999998 444321111111
Q ss_pred h---hccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEee-CCCcE
Q 044557 226 L---ERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGS-ADKTI 298 (362)
Q Consensus 226 ~---~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s-~D~~i 298 (362)
. .+..+-+.+++|+|. ...++.|+.-..+=+|.-...+ . +..+-||.+.|+.+.|.+ +.+.+|+ .|-.|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-p---l~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-P---LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-c---eeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 1 122456788999995 4589999988888777654322 2 334568999999999864 4666666 47889
Q ss_pred EEeeCCCCceeeeeEecCCCC-cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 299 RIWRGIDRNYTCLAVLEGHRG-PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..||+.. ....+..|.+|.. .=..+.|.. .+.+.+|+||+.||.|++||+..
T Consensus 276 l~WDiR~-~~~pv~~L~rhv~~TNQRI~FDl-------d~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 276 LCWDIRY-SRDPVYALERHVGDTNQRILFDL-------DPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred EEEeehh-ccchhhhhhhhccCccceEEEec-------CCCCceeeccCCCccEEEEecCC
Confidence 9999743 3345667888877 444455543 35568999999999999999965
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.6e-15 Score=117.21 Aligned_cols=193 Identities=20% Similarity=0.277 Sum_probs=133.9
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCc---------eEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDF---------KCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSP 215 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~---------~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~ 215 (362)
|..-+++|.+++|++|..+|.|.+..+++. +....-..+|.+++..++|.+ ..+++++ ||.|+-|....
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-~~Lls~g-dG~V~gw~W~E 90 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-DFLLSGG-DGLVYGWEWNE 90 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-hheeecc-CceEEEeeehh
Confidence 455678999999999999999999987542 211112258999999999983 3355554 59999997654
Q ss_pred CCCcceee----hhhhccc-----cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE-e
Q 044557 216 GNKKHSLV----DVLERHN-----SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV-V 285 (362)
Q Consensus 216 ~~~~~~~~----~~~~~h~-----~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~-~ 285 (362)
........ .....|. -.|+++...|...-++.++.|+.++.||+++++ +...++||++.|-++.. +
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~----i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR----IQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE----EEEEEcCCcceeeeeeecc
Confidence 32211110 1111122 358899999988888888899999999998754 45678999999999876 2
Q ss_pred -CCeEEEeeCCCcEEEeeCCCCceeeeeEec---------CC-CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 286 -SDLVCSGSADKTIRIWRGIDRNYTCLAVLE---------GH-RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 286 -~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~---------~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
...+.||++||++|+||.. +.++++.+. .| ...|.+++.+.+ +|+.|+ --.+-+|
T Consensus 167 ~~~qilsG~EDGtvRvWd~k--t~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-----------WlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTK--TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-----------WLVCGG-GPKLSLW 232 (325)
T ss_pred cCcceeecCCCccEEEEecc--ccceeEEeccccChhhcCcccCceeEEEeccCc-----------eEEecC-CCceeEE
Confidence 4489999999999999964 455565543 22 335777766432 344444 3568888
Q ss_pred ecc
Q 044557 355 QIS 357 (362)
Q Consensus 355 ~~~ 357 (362)
.+.
T Consensus 233 hLr 235 (325)
T KOG0649|consen 233 HLR 235 (325)
T ss_pred ecc
Confidence 874
No 185
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.67 E-value=1.1e-14 Score=124.44 Aligned_cols=298 Identities=18% Similarity=0.183 Sum_probs=179.6
Q ss_pred ccceeeeEec---CcEEEEecCCCeEEEeecCCCCccc---ceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcE
Q 044557 19 NSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSEL---DQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKI 90 (362)
Q Consensus 19 ~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i 90 (362)
..+|.++.|. .+.++||+.|..||+|.++...... ..++ ...+..|...+..+-++++ .|++|+.+|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y---~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY---LSSLSRHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE---eecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence 4578899884 2389999999999999987543222 1222 2334557778888888765 69999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
.+|......+. +... ..-.......++ ....+|.+.|..++|+|+++++++++-|+.+++||
T Consensus 90 ~lWk~~~~~~~----------~~d~----e~~~~ke~w~v~----k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 90 FLWKQGDVRIF----------DADT----EADLNKEKWVVK----KVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWD 151 (434)
T ss_pred EEEEecCcCCc----------cccc----hhhhCccceEEE----EEecccccchhhhhccCCCceeeeeeccceEEEEE
Confidence 99976531110 0000 000000000011 12246889999999999999999999999999999
Q ss_pred CCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee-----ehhhh----------cc----c
Q 044557 171 TSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL-----VDVLE----------RH----N 230 (362)
Q Consensus 171 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~-----~~~~~----------~h----~ 230 (362)
+..++.+..+. .|...+..++|.|-++ +++-+.|...+.+........+.. ..... -| .
T Consensus 152 v~~G~l~~~~~-dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk 230 (434)
T KOG1009|consen 152 VHAGQLLAILD-DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK 230 (434)
T ss_pred eccceeEeecc-ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence 99999877664 7999999999999886 667777776666554322111000 00000 01 1
Q ss_pred cceeEEEEecCCCEEEEEcC----CC-----cEEEEeccCCCCcEEEEEeecCccceeEEEEEe----------------
Q 044557 231 SGINALALSCDGSVLYSGAC----DR-----SIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---------------- 285 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~----d~-----~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------- 285 (362)
.-...++|+|||..|++.+. .+ +.++|+...-.. ....+.+-......+.++
T Consensus 231 sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r---P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~ 307 (434)
T KOG1009|consen 231 SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR---PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLF 307 (434)
T ss_pred hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC---ceeecCCCCcceEEEEeeeeEEEecccccccccc
Confidence 22346789999999887642 12 223444221111 111222222222222221
Q ss_pred ---CC-eEEEeeCCCcEEEeeCCCCceeeeeE-ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 286 ---SD-LVCSGSADKTIRIWRGIDRNYTCLAV-LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 286 ---~~-~~~s~s~D~~i~~W~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
.. .++.++. ..|.+||.. ...++.. -+-|=.+|++++|++++ ..|+..|.||-.-+
T Consensus 308 ~lpyrlvfaiAt~-~svyvydtq--~~~P~~~v~nihy~~iTDiaws~dg---------~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 308 VLPYRLVFAIATK-NSVYVYDTQ--TLEPLAVVDNIHYSAITDIAWSDDG---------SVLLVSSTDGFCSL 368 (434)
T ss_pred ccccceEEEEeec-ceEEEeccc--cccceEEEeeeeeeeecceeecCCC---------cEEEEeccCCceEE
Confidence 11 3444554 579999843 2222222 23477789999997654 35667788886544
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=2.5e-15 Score=123.17 Aligned_cols=206 Identities=18% Similarity=0.275 Sum_probs=150.0
Q ss_pred eecCceeEEEEecCC-----CEEEEEECCCcEEEEECCC--ceE-EEe-----eeccCcccEEEEEEcCC--CcEEEEeC
Q 044557 140 HHVDAVSALALTKDE-----TLLYSVSWDRTIKIWRTSD--FKC-LES-----ITNAHDDAINAVALSDD--GDVYTGSA 204 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~-----~~l~s~s~d~~i~iwd~~~--~~~-~~~-----~~~~h~~~v~~v~~~~~--~~~~s~~~ 204 (362)
.|..+++.+.|.|+. .+|||+ +..+|+|.+.. .+. .+. ....+..++++..|+.- ..+.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 467788888898876 356654 46899999873 221 111 12235667888888753 34778999
Q ss_pred CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEE
Q 044557 205 DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMA 283 (362)
Q Consensus 205 dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~ 283 (362)
|-+-.|||++++.. ......+..|..+|..|+|...+ ..+++.|.||.+|+||++.-+....+ ..-.......+.++
T Consensus 172 DTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII-YE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 172 DTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII-YEDPSPSTPLLRLS 249 (364)
T ss_pred cCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE-ecCCCCCCcceeec
Confidence 99999999998632 22344556799999999999865 47889999999999999976655433 22222234566777
Q ss_pred Ee---CCeEEEeeCCC-cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 284 VV---SDLVCSGSADK-TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 284 ~~---~~~~~s~s~D~-~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++ ++++||-..|. .|.+-|+.. ...++..|.+|+..|++++|.|... ..|+|+++|+.+-+||+.-
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~-P~tpva~L~~H~a~VNgIaWaPhS~--------~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRV-PCTPVARLRNHQASVNGIAWAPHSS--------SHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecC-CCcceehhhcCcccccceEecCCCC--------ceeeecCCcceEEEEeccc
Confidence 75 45788877765 488888644 3456889999999999999998643 3599999999999999963
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.5e-15 Score=128.16 Aligned_cols=198 Identities=21% Similarity=0.260 Sum_probs=139.2
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
.+++|+++|..|++|+.||++|||+..+...+.... .|...|.++.|+|||+ +++.+.| ..+||+..++...+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 689999999999999999999999977655444333 6888999999999997 7778888 999999998855443321
Q ss_pred hhhccccceeEEEEecCC-----CEEEEEcCCCcEEEEeccCCCC-cEEEEEeecCccceeEEEEEeC--CeEEEeeCCC
Q 044557 225 VLERHNSGINALALSCDG-----SVLYSGACDRSIIVWEKEEDDG-NILVVGALRGHTKSILCMAVVS--DLVCSGSADK 296 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~-----~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~ 296 (362)
...+.-...+.|+.|+ ...+....-+.|+.|++..-.. +.........-.+.|.+++++. .+++.|+.||
T Consensus 226 --~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 226 --FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred --cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 2233445667787776 2333344455677776542111 1111111112234688888864 5999999999
Q ss_pred cEEEeeCCCCceeeee-EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 297 TIRIWRGIDRNYTCLA-VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~-~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.|-+++.. ..++++ .-+.|...|+++.|+|+.. ++++.|.|.++.|-.++.
T Consensus 304 sVai~~~~--~lq~~~~vk~aH~~~VT~ltF~Pdsr---------~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAK--SLQRLQYVKEAHLGFVTGLTFSPDSR---------YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEEec--eeeeeEeehhhheeeeeeEEEcCCcC---------cccccccCCceeEEEEee
Confidence 99999853 344444 3358999999999998754 467778888888877654
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=3.9e-15 Score=122.07 Aligned_cols=185 Identities=16% Similarity=0.205 Sum_probs=138.4
Q ss_pred eecCceeEEEEec-CCCEEEEEECCCcEEEEECCCceE--EEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCC
Q 044557 140 HHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFKC--LESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRS 214 (362)
Q Consensus 140 ~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~ 214 (362)
.+..++++..|+. +-+++.++|-|-+..|||++++.. +++-..+|..+|..++|..++. |++.+.||.||+||+.
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 3556788888876 457899999999999999998743 4554558999999999998774 8899999999999998
Q ss_pred CCCCcceeehhhhccccceeEEEEec-CCCEEEEEcCCC-cEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeE
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDR-SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLV 289 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~ 289 (362)
..+.. +++..-.....+.-.++|++ |-+++++-..|. .|.+-|++.+.. .+..+.+|...|..++|.+ ..+
T Consensus 228 ~leHS-TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t---pva~L~~H~a~VNgIaWaPhS~~hi 303 (364)
T KOG0290|consen 228 SLEHS-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT---PVARLRNHQASVNGIAWAPHSSSHI 303 (364)
T ss_pred ccccc-eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc---ceehhhcCcccccceEecCCCCcee
Confidence 76533 34433333355777788887 557888887765 588999986543 4667899999999999964 489
Q ss_pred EEeeCCCcEEEeeCCCCce----eeeeEecCCCCcEEEEEeeec
Q 044557 290 CSGSADKTIRIWRGIDRNY----TCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 290 ~s~s~D~~i~~W~~~~~~~----~~~~~l~~h~~~v~~~~~~~~ 329 (362)
+|++.|..+.+||+..... .++-.+ .-...|+.++|++.
T Consensus 304 ctaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 304 CTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSS 346 (364)
T ss_pred eecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeeccc
Confidence 9999999999999643111 111112 24557888888754
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.8e-14 Score=136.42 Aligned_cols=250 Identities=22% Similarity=0.350 Sum_probs=155.4
Q ss_pred ccceeeeEec----CcEEEEecCCCeEEEeecCCCC---cccceeeeccceeEEeecceeEEEEEc--CceeEEEecCCc
Q 044557 19 NSYVSSLALA----GKFLYTGSSDNEVRSWDCNTFS---SELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDHK 89 (362)
Q Consensus 19 ~~~V~~l~~~----~~~l~t~s~Dg~i~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg~ 89 (362)
...|+.+.+- ..++++|+.||.||||+--... .++...+..-...+....+...-+.+. ...|++++.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 3567888772 3589999999999999732111 111111111000001111111111232 235777777899
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe-cCCCEEEEEECCCcEEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT-KDETLLYSVSWDRTIKI 168 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~d~~i~i 168 (362)
|++||..... ....+|... ..-++++.-+ +.|+.+++|-.||.||+
T Consensus 1189 IRIWDa~~E~-------~~~diP~~s--------------------------~t~vTaLS~~~~~gn~i~AGfaDGsvRv 1235 (1387)
T KOG1517|consen 1189 IRIWDAHKEQ-------VVADIPYGS--------------------------STLVTALSADLVHGNIIAAGFADGSVRV 1235 (1387)
T ss_pred EEEEecccce-------eEeecccCC--------------------------CccceeecccccCCceEEEeecCCceEE
Confidence 9999986432 122222211 1223444332 34789999999999999
Q ss_pred EECCCce--EEEeeeccCccc--EEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceeehhhhccc--c-ceeEEEEe
Q 044557 169 WRTSDFK--CLESITNAHDDA--INAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHN--S-GINALALS 239 (362)
Q Consensus 169 wd~~~~~--~~~~~~~~h~~~--v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~--~-~v~~i~~s 239 (362)
||.+... +.-.....|... |..+.+.+.| ++++|+.||.|++||+.... ...... ...|. + ..+++.++
T Consensus 1236 yD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~-iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1236 YDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLT-IVAHWEYGSALTALTVH 1313 (1387)
T ss_pred eecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccce-eeeccccCccceeeeec
Confidence 9987532 232333568776 8899998876 49999999999999997632 222221 12222 2 48999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEE--EeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVV--GALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
++-..+++|+. +.|++|++..+.-+.... +.+....+.+.|++|.+. +++.|+.|.+|.+|...
T Consensus 1314 ~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1314 EHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred cCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 99999999999 999999986432111100 001112345689999876 78999999999999853
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1e-12 Score=122.56 Aligned_cols=115 Identities=23% Similarity=0.368 Sum_probs=94.5
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCC---ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD---FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~ 215 (362)
.|.-.++|.+++|+++++|+|-.||.|.+|.--. ...-.+..+-|...|.+++|+++|. +++|+..|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4666789999999999999999999999996322 1222233446888999999999996 99999999999999988
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
++ +++ +++-.++|..+.++||+.+.+....|+.|.+-.+
T Consensus 283 ~~--kqf---LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 283 GK--KQF---LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred CC--ccc---ccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 76 233 3455789999999999999999999999988764
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=4.2e-13 Score=111.65 Aligned_cols=237 Identities=13% Similarity=0.111 Sum_probs=162.9
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCC-cccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFS-SELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRV 92 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~ 92 (362)
-..+|++-+|. ...+|.+-....|.||...... .+. .+.+..|...+..+++.+ ++|++++.|..-.+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-------~htls~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-------AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-------ceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence 35789999995 5689999899999999865533 111 223345667788887764 68999999999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
|....+..- .++..+..+....+++.|+|.++.||+||.-+.|.||-.+
T Consensus 82 w~~~~~~~W-------------------------------kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E 130 (361)
T KOG1523|consen 82 WTQPSGGTW-------------------------------KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE 130 (361)
T ss_pred cccCCCCee-------------------------------ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence 976322110 0122345678899999999999999999999999999877
Q ss_pred CceEE---EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCC-----CCC---------Ccceeehhhhcccccee
Q 044557 173 DFKCL---ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRS-----PGN---------KKHSLVDVLERHNSGIN 234 (362)
Q Consensus 173 ~~~~~---~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~-----~~~---------~~~~~~~~~~~h~~~v~ 234 (362)
..+-. +.+.+.+...|.++.|+|++- +++|+.|++.++|... ... +...+........+.|.
T Consensus 131 ~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh 210 (361)
T KOG1523|consen 131 QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH 210 (361)
T ss_pred cccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee
Confidence 54321 224456788899999999997 6788999999999632 100 00011222223456799
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-CeEEEeeCC
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-DLVCSGSAD 295 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~s~s~D 295 (362)
.+.|+|+|..|+-.+.|.++.+-|...+......+ .....+.+++.|.. ..++.++.|
T Consensus 211 ~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~---~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 211 GVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV---ATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred eeEeCCCCCEeeEecCCCceEEeecCCCchhccch---hhccCCceeeEeecCCceeecCCC
Confidence 99999999999999999999999876543222221 11224445555532 244444444
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=4.6e-14 Score=117.32 Aligned_cols=208 Identities=16% Similarity=0.216 Sum_probs=157.8
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCc---eEEEeeeccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF---KCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~ 216 (362)
-.++|+|.+|++|...+|.+-....|.||..... +..+++. .|...|+.|.|+|.. ++++++.|..-.+|...++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 3578999999999999999999999999987654 4556564 799999999999987 6999999999999987333
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCC--eEEEee
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSD--LVCSGS 293 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~--~~~s~s 293 (362)
. ..+..-++-+++..++++.|+|.+..+++||.-..|.+|-.+.++ ...+... -+-+...|++++|.++ +++.||
T Consensus 88 ~-~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN-dWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 G-TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN-DWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred C-eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc-ceehhhhhCCccccceeeeeccCCcceecccc
Confidence 2 112222456788999999999999999999999999999887543 3322111 1234566899999766 899999
Q ss_pred CCCcEEEeeCC-----CC-----------ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 294 ADKTIRIWRGI-----DR-----------NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 294 ~D~~i~~W~~~-----~~-----------~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.|+..|++... ++ -+.++..+..-.+.|..+.|+|++.+ |+=.++|+++.+=|..
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~---------lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR---------LAWVGHDSTVSFVDAA 236 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE---------eeEecCCCceEEeecC
Confidence 99999999731 11 11223334456678999999887654 6677889998888877
Q ss_pred cCc
Q 044557 358 FPL 360 (362)
Q Consensus 358 ~~~ 360 (362)
.|.
T Consensus 237 ~p~ 239 (361)
T KOG1523|consen 237 GPS 239 (361)
T ss_pred CCc
Confidence 664
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=1.6e-13 Score=127.20 Aligned_cols=209 Identities=15% Similarity=0.169 Sum_probs=145.7
Q ss_pred ecCceeEEEEecCC-CEEEEEECCCcEEEEECCCceE-----EEeeeccCcccEEEEEEcCC--C-cEEEEeCCCeEEEE
Q 044557 141 HVDAVSALALTKDE-TLLYSVSWDRTIKIWRTSDFKC-----LESITNAHDDAINAVALSDD--G-DVYTGSADKKIKVW 211 (362)
Q Consensus 141 h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~-----~~~~~~~h~~~v~~v~~~~~--~-~~~s~~~dg~i~iw 211 (362)
-...|+|+.|+|.. .+++.|..+|.|.+||++.+.. +......|..++..+.|..+ + .+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 35679999999854 6788889999999999987643 23344568999999998643 2 49999999999999
Q ss_pred eCCCCCCcce-eehhhh-------ccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcE----EEEEeecCccce
Q 044557 212 RRSPGNKKHS-LVDVLE-------RHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNI----LVVGALRGHTKS 278 (362)
Q Consensus 212 ~~~~~~~~~~-~~~~~~-------~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~h~~~ 278 (362)
+++.-..... ...... .....++++.|.+ +...++.|..+|.|.--+........ ........|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8764322110 100001 1234678899987 56788899999988763333222211 112234567788
Q ss_pred eEEEEEeC---CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 279 ILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 279 v~~~~~~~---~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|.++.+++ .++.|++ |-+||||+... ...++-.+.-+...|.+++|+|.+. ..++++..||.|.+||
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~-~~~Pl~~~~~~~~~v~~vaWSptrp--------avF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDV-IASPLLSLDSSPDYVTDVAWSPTRP--------AVFATVDGDGNLDIWD 470 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccC-CCCcchhhhhccceeeeeEEcCcCc--------eEEEEEcCCCceehhh
Confidence 88887753 4666666 99999998531 2344556677888899999998653 4789999999999999
Q ss_pred cccC
Q 044557 356 ISFP 359 (362)
Q Consensus 356 ~~~~ 359 (362)
+...
T Consensus 471 Ll~~ 474 (555)
T KOG1587|consen 471 LLQD 474 (555)
T ss_pred hhcc
Confidence 9644
No 194
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.60 E-value=1.1e-14 Score=130.99 Aligned_cols=202 Identities=19% Similarity=0.230 Sum_probs=133.4
Q ss_pred ceeEEEEec-CCCEEEEEECCCcEEEEECCCceE------EEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCC
Q 044557 144 AVSALALTK-DETLLYSVSWDRTIKIWRTSDFKC------LESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRS 214 (362)
Q Consensus 144 ~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~------~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~ 214 (362)
.|+.+.|+| |...||.+++||.|++|.+..+-. ...+...|...|.++.|+|=- -|+++++|-+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 367788888 556899999999999999865321 123445799999999999853 37899999999999998
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCCeEEEee
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSDLVCSGS 293 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~s~s 293 (362)
++.... .+.+|...|..++|||||+.+++.+.||+|++|.-++.+.....-....| ...+|. ++..+.+++..+
T Consensus 709 ~~~~~~----~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~-wacdgr~viv~G 783 (1012)
T KOG1445|consen 709 NAKLYS----RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARIL-WACDGRIVIVVG 783 (1012)
T ss_pred hhhhhh----eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEE-EEecCcEEEEec
Confidence 875433 45689999999999999999999999999999998765443221111111 112222 233455555444
Q ss_pred C----CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc-cCCCCCceEEEecCCCCcEEEEeccc
Q 044557 294 A----DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR-CDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 294 ~----D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~-~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
- .+.|.+|+...-....+. +..+..+|+--. ....+.+-++++|-.|..|.+|.+-+
T Consensus 784 fdk~SeRQv~~Y~Aq~l~~~pl~--------t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLDLRPLY--------TQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred ccccchhhhhhhhhhhccCCcce--------eeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 3 466778874221111111 111222221100 01134556889999999999998843
No 195
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=8.4e-15 Score=129.65 Aligned_cols=166 Identities=20% Similarity=0.321 Sum_probs=129.8
Q ss_pred EEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--c-EEEEeCCCeEEEEeC
Q 044557 137 TWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--D-VYTGSADKKIKVWRR 213 (362)
Q Consensus 137 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~-~~s~~~dg~i~iw~~ 213 (362)
++.+|++=|.|+.|+.+|.+|++||.|-.+.|||.-..+.+..+..+|...|.++.|-|.. + +++|+.|..|++||+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 4568999999999999999999999999999999999899999988999999999998753 3 789999999999999
Q ss_pred CCCCC------cceeehhhhccccceeEEEEecCC-CEEEEEcCCCcEEEEeccCCCCcE------EEEEeecCccceeE
Q 044557 214 SPGNK------KHSLVDVLERHNSGINALALSCDG-SVLYSGACDRSIIVWEKEEDDGNI------LVVGALRGHTKSIL 280 (362)
Q Consensus 214 ~~~~~------~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~------~~~~~~~~h~~~v~ 280 (362)
...+. ..........|...|..|+..|++ ..+.+++.||+||-||++++.... ..+..+....-...
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk 204 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK 204 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence 75221 112234456788999999999988 788999999999999998632110 00000101112245
Q ss_pred EEEEeC---CeEEEeeCCCcEEEee
Q 044557 281 CMAVVS---DLVCSGSADKTIRIWR 302 (362)
Q Consensus 281 ~~~~~~---~~~~s~s~D~~i~~W~ 302 (362)
|+..++ .+++.|+.|--+++||
T Consensus 205 ~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 205 CLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred eeeecCCCCceEEecCCCchhhhhh
Confidence 777664 4899999999999998
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.58 E-value=9.5e-12 Score=111.53 Aligned_cols=254 Identities=15% Similarity=0.211 Sum_probs=145.2
Q ss_pred eeeecccCccceeeeEe--cCcEEEEe-cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 11 CLTTLKGHNSYVSSLAL--AGKFLYTG-SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~--~~~~l~t~-s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
+++++.. .+....+.+ ++++|+.+ ..++.|.+|++.. ...+. ... . .. ..+....+.+.++ .+++++
T Consensus 27 ~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-~g~l~--~~~--~-~~-~~~~p~~i~~~~~g~~l~v~~ 98 (330)
T PRK11028 27 LLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-DGALT--FAA--E-SP-LPGSPTHISTDHQGRFLFSAS 98 (330)
T ss_pred eeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECC-CCceE--Eee--e-ec-CCCCceEEEECCCCCEEEEEE
Confidence 4455542 344556666 47777555 4589999999852 11111 000 0 00 0123345666644 477765
Q ss_pred c-CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE-ECC
Q 044557 86 Q-DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV-SWD 163 (362)
Q Consensus 86 ~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~d 163 (362)
. ++.|.+|+++....... ..... .+.....+++++|++++++++ ..+
T Consensus 99 ~~~~~v~v~~~~~~g~~~~---~~~~~----------------------------~~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 99 YNANCVSVSPLDKDGIPVA---PIQII----------------------------EGLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred cCCCeEEEEEECCCCCCCC---ceeec----------------------------cCCCcccEeEeCCCCCEEEEeeCCC
Confidence 4 88999999863221100 00000 011234567899999988655 466
Q ss_pred CcEEEEECCCceEEEe-----eeccCcccEEEEEEcCCCc-EEEEeC-CCeEEEEeCCCCCCcceeehhhhc------cc
Q 044557 164 RTIKIWRTSDFKCLES-----ITNAHDDAINAVALSDDGD-VYTGSA-DKKIKVWRRSPGNKKHSLVDVLER------HN 230 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~-----~~~~h~~~v~~v~~~~~~~-~~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~------h~ 230 (362)
+.|.+||+++...+.. ...........++|+|+|+ ++++.. +++|.+|+++...........+.. +.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 9999999976332211 1111223457899999998 555554 899999999743211122211111 11
Q ss_pred cceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEee-CCCcEEEeeCC
Q 044557 231 SGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGS-ADKTIRIWRGI 304 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s-~D~~i~~W~~~ 304 (362)
.....+.++|+|++|+++.. ++.|.+|++.........+...... .....+.+++ .+++++. .+++|.+|+..
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 12346889999999999864 7899999987654433333333221 2334566654 4555444 58999999854
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1.1e-11 Score=105.10 Aligned_cols=195 Identities=16% Similarity=0.212 Sum_probs=133.2
Q ss_pred eeeeEecCcEEEEecCCCe--EEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCC
Q 044557 22 VSSLALAGKFLYTGSSDNE--VRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQE 99 (362)
Q Consensus 22 V~~l~~~~~~l~t~s~Dg~--i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~ 99 (362)
|--..|+..++|-.+.+.. +++.+++......... ....+.++.++.++|+.+=++. |.+||++.-+
T Consensus 49 IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~----------fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk 117 (391)
T KOG2110|consen 49 IVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF----------FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK 117 (391)
T ss_pred EEEeecccceeEEEecCCCceEEEEEcccCceEEEEe----------cCCceEEEEEccceEEEEEccc-EEEEecccce
Confidence 3344456666666665544 7888765433222222 2346777778888888777665 9999997543
Q ss_pred CCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE--CCCcEEEEECCCceEE
Q 044557 100 PDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS--WDRTIKIWRTSDFKCL 177 (362)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~ 177 (362)
..+ ++.. ...+...+.++++++.+.+||--+ .-|.|.|||..+.+.+
T Consensus 118 lLh-------TI~t------------------------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v 166 (391)
T KOG2110|consen 118 LLH-------TIET------------------------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV 166 (391)
T ss_pred eeh-------hhhc------------------------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee
Confidence 211 1100 001223345566666666777532 3489999999999888
Q ss_pred EeeeccCcccEEEEEEcCCCc-EEEEeCCCe-EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 178 ESITNAHDDAINAVALSDDGD-VYTGSADKK-IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 178 ~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~-i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
..+. +|.+++-+++|+++|. ++|+++.|+ ||||.+.++.....+-.- .-...|.+++|+|++++|++.|..++|+
T Consensus 167 ~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG--~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 167 NTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG--TYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred eEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC--ceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 8876 8999999999999998 778888885 799999887643332111 1134578999999999999999999999
Q ss_pred EEeccC
Q 044557 256 VWEKEE 261 (362)
Q Consensus 256 ~wd~~~ 261 (362)
+|.++.
T Consensus 244 iFKL~~ 249 (391)
T KOG2110|consen 244 IFKLEK 249 (391)
T ss_pred EEEecc
Confidence 998753
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.2e-13 Score=117.66 Aligned_cols=164 Identities=12% Similarity=0.145 Sum_probs=124.5
Q ss_pred EeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEE
Q 044557 138 WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD------FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKV 210 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~i 210 (362)
+.+|.+-|.++.|+.++++|++|+.|..+++|++.. .+++......|...|.|++|.-.++ +++|..+++|.+
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 357999999999999999999999999999999853 4566656667888999999987776 889999999999
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---C
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---D 287 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~ 287 (362)
-|+++..... ........+.|..+..+|....+++.+.++.|.+||.+........+ .+.........+-|.+ .
T Consensus 132 HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 132 HDIETKQSIY--VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eecccceeee--eecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-eecCCCccceeeeecCCCce
Confidence 9998754221 11112234589999999999999999999999999988644222111 1122233345555654 4
Q ss_pred eEEEeeCCCcEEEeeCC
Q 044557 288 LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~ 304 (362)
+|++.+.-+.+-+||..
T Consensus 209 Li~~~~~~~G~~~~D~R 225 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRR 225 (609)
T ss_pred eEEeccccCCCCceeec
Confidence 89999999999999853
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.7e-13 Score=117.92 Aligned_cols=193 Identities=20% Similarity=0.252 Sum_probs=134.9
Q ss_pred EEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEE
Q 044557 72 KSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALA 149 (362)
Q Consensus 72 ~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 149 (362)
..++++++ .+++++.||++|+|+....... .....|...|.++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~----------------------------------l~e~~~~~eV~DL~ 193 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI----------------------------------LEEIAHHAEVKDLD 193 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh----------------------------------hhhHhhcCccccce
Confidence 34455544 5999999999999996432210 01135778899999
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEeeec-cCcccEEEEEEcCCC-----cEEEE-eCCCeEEEEeCCCCCCc--c
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESITN-AHDDAINAVALSDDG-----DVYTG-SADKKIKVWRRSPGNKK--H 220 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~v~~~~~~-----~~~s~-~~dg~i~iw~~~~~~~~--~ 220 (362)
|+||+++|++-+.| ..+||+++++.++..... .-..-...+.|+.++ ++++. ..-+.|+.|++...... .
T Consensus 194 FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l 272 (398)
T KOG0771|consen 194 FSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL 272 (398)
T ss_pred eCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc
Confidence 99999999999999 999999999866654431 122234567787665 33332 33456666665443321 1
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i 298 (362)
....... ....|+++++++||++++.|+.||.|-+++..+-+. ....-+.|...|+.+.|+|+ .+++.|.|..+
T Consensus 273 ~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~ 348 (398)
T KOG0771|consen 273 RLRKKIK-RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEA 348 (398)
T ss_pred chhhhhh-ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee---eEeehhhheeeeeeEEEcCCcCcccccccCCce
Confidence 1111222 345799999999999999999999999999875332 22234679999999999886 78889999888
Q ss_pred EEeeC
Q 044557 299 RIWRG 303 (362)
Q Consensus 299 ~~W~~ 303 (362)
.+-++
T Consensus 349 ~v~~l 353 (398)
T KOG0771|consen 349 AVTKL 353 (398)
T ss_pred eEEEE
Confidence 88874
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.54 E-value=4.6e-13 Score=118.48 Aligned_cols=167 Identities=18% Similarity=0.224 Sum_probs=118.7
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~ 218 (362)
.|.+.+.|-.|+|||.-|+++++||.|++|.-.. +++........+|.|++|.|+.. ++-+ ..+.+.|=-+....
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~- 177 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANS- 177 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeeccccc-
Confidence 5888899999999999999999999999997443 22222224567899999999876 3332 33344443333221
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCc
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~ 297 (362)
+.+ ..+.|.+-|-++.|++....+++||.|-..++||.... .+.+-..|.-+|++++|.++ .++.+|. ++
T Consensus 178 --k~i-~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-----~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt 248 (737)
T KOG1524|consen 178 --KII-RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-----NLFTSAAEEYAITSVAFNPEKDYLLWSY-NT 248 (737)
T ss_pred --cee-EEeccCcEEEEeecCccccceeecCCceeEEeecccCc-----ccccCChhccceeeeeeccccceeeeee-ee
Confidence 122 23579999999999999999999999999999997532 22334568889999999987 3444443 34
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
.|+= +...+.|..++|++|+.+
T Consensus 249 ~R~~-------------~p~~GSifnlsWS~DGTQ 270 (737)
T KOG1524|consen 249 ARFS-------------SPRVGSIFNLSWSADGTQ 270 (737)
T ss_pred eeec-------------CCCccceEEEEEcCCCce
Confidence 4421 134667999999988754
No 201
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=3.1e-13 Score=128.09 Aligned_cols=196 Identities=21% Similarity=0.296 Sum_probs=147.7
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEE---EcCCC-cEEEEeCCCeEEEEeCCCCCCcc
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVA---LSDDG-DVYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~---~~~~~-~~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
+....+..+.+.++.++.++.+-+||........++.........+++ ++++. ++++|+.-+.|.+|+....++.
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p- 168 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP- 168 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-
Confidence 333455566778889999999999999888776665432222222222 23433 3788999999999998733221
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRI 300 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~ 300 (362)
. .+.+|.+.+.++.++.||+++++.|.|+++|+|++++.+... ...-+|+.+|..+.+.++.++|+++|.+.++
T Consensus 169 ~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n~i~t~gedctcrv 242 (967)
T KOG0974|consen 169 I---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPNRIITVGEDCTCRV 242 (967)
T ss_pred c---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccceeEEeccceEEEE
Confidence 1 467899999999999999999999999999999998754321 3455899999999998889999999999999
Q ss_pred eeCCCCceeeeeEecCCCC-cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 301 WRGIDRNYTCLAVLEGHRG-PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
|+... ..+..+.+|.. .|+.++..+. ..+++|++.|+.+++|++...
T Consensus 243 W~~~~---~~l~~y~~h~g~~iw~~~~~~~---------~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNG---TQLEVYDEHSGKGIWKIAVPIG---------VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eeccc---ceehhhhhhhhcceeEEEEcCC---------ceEEEeeccCcchhhhhhhcc
Confidence 97543 33447777754 6788776533 357899999999999998543
No 202
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.53 E-value=1.3e-13 Score=117.89 Aligned_cols=160 Identities=26% Similarity=0.445 Sum_probs=126.9
Q ss_pred cccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCc-----ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEE
Q 044557 185 DDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKK-----HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257 (362)
Q Consensus 185 ~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~-----~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~w 257 (362)
..++.++.|.++. .++||+.|..|++|.+...... -.....+..|...|+.+.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 3578888888764 5899999999999987654432 23456788899999999999999999999999999999
Q ss_pred ecc--------C----CCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEE
Q 044557 258 EKE--------E----DDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKC 323 (362)
Q Consensus 258 d~~--------~----~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~ 323 (362)
... . ..+.+.....+.+|...|..++|+++ ++++++.|..+++||. ..+...+.+.+|..-|..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv--~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV--HAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe--ccceeEeeccccccccce
Confidence 765 1 12335566778899999999999765 8999999999999996 356778999999999999
Q ss_pred EEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 324 LAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+++.|-. +++++=|.|...+...
T Consensus 171 vawDpl~---------qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 171 VAWDPLN---------QYVASKSSDRHPEGFS 193 (434)
T ss_pred eecchhh---------hhhhhhccCcccceee
Confidence 9887654 3466666666444443
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=8.1e-13 Score=117.00 Aligned_cols=136 Identities=21% Similarity=0.291 Sum_probs=103.6
Q ss_pred cCceeEEEEecCC-CEEEEEECCCcEEEEECCC--------------ce---E-----------EEeeeccCcccEEEEE
Q 044557 142 VDAVSALALTKDE-TLLYSVSWDRTIKIWRTSD--------------FK---C-----------LESITNAHDDAINAVA 192 (362)
Q Consensus 142 ~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~--------------~~---~-----------~~~~~~~h~~~v~~v~ 192 (362)
+..++|+.|-|.+ ..|+.+-.+|.+.+||.+- +. . +..+. .-.+.|+..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~-~~~g~in~f~ 297 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH-IGEGSINEFA 297 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE-ecccccccee
Confidence 4689999998755 4566667899999997531 00 0 01111 1234688899
Q ss_pred EcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe
Q 044557 193 LSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA 271 (362)
Q Consensus 193 ~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 271 (362)
|+|||+ |++.+.||.+||||..+.+ +...++.--+...|++|||||++|++||.|--|.+|.+.+. .++..
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~e----Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er----RVVAR 369 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQE----LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER----RVVAR 369 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHH----HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc----eEEEe
Confidence 999997 8899999999999987653 34444444678999999999999999999999999998753 25556
Q ss_pred ecCccceeEEEEEeC
Q 044557 272 LRGHTKSILCMAVVS 286 (362)
Q Consensus 272 ~~~h~~~v~~~~~~~ 286 (362)
=.||...|..++|++
T Consensus 370 GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFDP 384 (636)
T ss_pred ccccccceeeEeecc
Confidence 679999999999986
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2e-12 Score=119.73 Aligned_cols=232 Identities=19% Similarity=0.159 Sum_probs=143.1
Q ss_pred CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC---CcEEEEecCCCCCCcccceeeeecc
Q 044557 38 DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD---HKIRVWKINNQEPDHQKYTRLATLP 112 (362)
Q Consensus 38 Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~ 112 (362)
+..|.+||...... ..+..+...+....++++ .|+.++.+ ..|.+||+..+... .+..
T Consensus 183 ~~~i~i~d~dg~~~----------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-----~l~~-- 245 (429)
T PRK01742 183 PYEVRVADYDGFNQ----------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-----VVAS-- 245 (429)
T ss_pred eEEEEEECCCCCCc----------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-----EEec--
Confidence 57899999754321 111223445666677665 46665543 36999998654310 0100
Q ss_pred CCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEE--ECCCceEEEeeeccCcccEE
Q 044557 113 TLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIW--RTSDFKCLESITNAHDDAIN 189 (362)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iw--d~~~~~~~~~~~~~h~~~v~ 189 (362)
..+.....+|+|||+.|+.++ .++.+.|| |+.+++. ..+. .+...+.
T Consensus 246 ----------------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~ 295 (429)
T PRK01742 246 ----------------------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNT 295 (429)
T ss_pred ----------------------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcC
Confidence 011223578999999887764 68876666 5655543 3343 3555677
Q ss_pred EEEEcCCCc-EE-EEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEE
Q 044557 190 AVALSDDGD-VY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNIL 267 (362)
Q Consensus 190 ~v~~~~~~~-~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 267 (362)
...|+|+|+ ++ ++..+|...||++.......... .+.. ....|+|||++|+..+.++ +..||+.++...
T Consensus 296 ~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-- 366 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-- 366 (429)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE--
Confidence 899999997 44 44467888999875433222222 2222 3578999999999888765 556898764321
Q ss_pred EEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 268 VVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 268 ~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
.+. ..+. .....|++ .+++.++.++.+++|......+.....+.+|...+...+|+|-
T Consensus 367 ~lt--~~~~--~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 367 VLS--STFL--DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred Eec--CCCC--CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 111 1111 23344554 4899999999999887544445567788888888888888763
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=2.1e-10 Score=97.59 Aligned_cols=152 Identities=19% Similarity=0.302 Sum_probs=108.9
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc--CcccEEEEEEcCCCcEEE---EeCCCeEEEEeCCCC
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA--HDDAINAVALSDDGDVYT---GSADKKIKVWRRSPG 216 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~s---~~~dg~i~iw~~~~~ 216 (362)
...|.++.++.+ .|+++=++. |.|||+++.+.++++..- +...+.++.+++.+..++ ....|.|.+||..+-
T Consensus 87 pt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 356778887654 566555544 999999999999887643 333344444444443332 345789999998765
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc-EEEEeccCCCCcEEEEEeec-Cc-cceeEEEEEeCC--eEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS-IIVWEKEEDDGNILVVGALR-GH-TKSILCMAVVSD--LVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~-~h-~~~v~~~~~~~~--~~~s 291 (362)
.. ...+..|.+++.+++|+++|.+||+||..|+ ||++...+++. +..++ |- ...|.+++|+++ +|+.
T Consensus 164 ~~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k----l~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 164 QP----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK----LYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred ee----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE----eeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 42 3345689999999999999999999999998 69999876542 22222 21 345788899765 8888
Q ss_pred eeCCCcEEEeeCC
Q 044557 292 GSADKTIRIWRGI 304 (362)
Q Consensus 292 ~s~D~~i~~W~~~ 304 (362)
.|..++|.++++.
T Consensus 236 sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 236 SSNTETVHIFKLE 248 (391)
T ss_pred ecCCCeEEEEEec
Confidence 8999999999864
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.50 E-value=1.4e-12 Score=115.58 Aligned_cols=163 Identities=22% Similarity=0.295 Sum_probs=119.8
Q ss_pred CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
...|+.++.||.+.|-+-. ++..+.+ .+|.+++.+-.|+|+|. ++++++||.|++|... |- +-.++.....+
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GM----LRStl~Q~~~~ 147 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-ARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GM----LRSTVVQNEES 147 (737)
T ss_pred cceEEEEcCCceEEEeccc-chhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-ch----HHHHHhhcCce
Confidence 3467788899999987633 3333333 58999999999999998 9999999999999753 32 22233445678
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceee
Q 044557 233 INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTC 310 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~ 310 (362)
|.|++|.|+..-++-+.. +.+.+=.+..+. .+-.++.|.+-|+|+.|++ ++++||++|-..|+||... ..
T Consensus 148 v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~----k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G---~~ 219 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQG-GHISIKPLAANS----KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG---AN 219 (737)
T ss_pred eEEEEECCCCCceEEecC-CeEEEeeccccc----ceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC---cc
Confidence 999999998765554432 345454444322 2335789999999999974 6999999999999999643 33
Q ss_pred eeEecCCCCcEEEEEeeecCC
Q 044557 311 LAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 311 ~~~l~~h~~~v~~~~~~~~~~ 331 (362)
+-+-..|.-+|++++|.|+..
T Consensus 220 Lf~S~~~ey~ITSva~npd~~ 240 (737)
T KOG1524|consen 220 LFTSAAEEYAITSVAFNPEKD 240 (737)
T ss_pred cccCChhccceeeeeeccccc
Confidence 444567999999999998843
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.49 E-value=1.3e-11 Score=119.00 Aligned_cols=258 Identities=14% Similarity=0.214 Sum_probs=153.0
Q ss_pred cceeEEEEEcC---ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 68 KGAVKSLVVLA---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 68 ~~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
...+..++.+. ..+++|+.||+|++|+...-...... ....+++.....+
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s---------------------------~rS~ltys~~~sr 1100 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS---------------------------ARSELTYSPEGSR 1100 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce---------------------------eeeeEEEeccCCc
Confidence 34455555543 35899999999999998643211000 0111223334567
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCce-------EEEeeeccCcccEEEE-EEcCC-C--cEEEEeCCCeEEEEeC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFK-------CLESITNAHDDAINAV-ALSDD-G--DVYTGSADKKIKVWRR 213 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~~h~~~v~~v-~~~~~-~--~~~s~~~dg~i~iw~~ 213 (362)
+.++...+++..+|.++.||.|++.+++..+ +.+.......+.+.++ ++... + .++.+...+.|..||.
T Consensus 1101 ~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1101 VEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred eEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 8899999999999999999999999987521 1222222233344444 34321 2 3566777889999998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---C--Ce
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---S--DL 288 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~--~~ 288 (362)
.......++ ......+.|++++++|-+.++++|...|.+.+||++-... ..-.... +...+..+... + ..
T Consensus 1181 r~~~~~w~l--k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~--i~sw~~P-~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1181 RMRHDAWRL--KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--ILSWEHP-ARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred hhhhhHHhh--hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce--eecccCc-ccCCcceEEeeccCCCCce
Confidence 765433222 2233457899999999999999999999999999985321 1111122 23445444432 2 23
Q ss_pred -EEEee-CCCcEEEeeCCCCceeeeeEecC--------CCCcEEEEEeeec---CCccCCCCCceEEEecCCCCcEEEEe
Q 044557 289 -VCSGS-ADKTIRIWRGIDRNYTCLAVLEG--------HRGPVKCLAAAID---NDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 289 -~~s~s-~D~~i~~W~~~~~~~~~~~~l~~--------h~~~v~~~~~~~~---~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+.+++ ..+.|.+|++.... +-.++-. |..+.. .+-.|. +..|.....+.++.+|+.|..||.||
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g~--~~~vl~~s~~~p~ls~~~Ps~-~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGL--RQTVLWASDGAPILSYALPSN-DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred EEEecccCCCceeeeecccCc--ceEEEEcCCCCcchhhhcccc-cCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 44444 67889999865422 2222211 111111 000010 00122233445788999999999999
Q ss_pred cccCc
Q 044557 356 ISFPL 360 (362)
Q Consensus 356 ~~~~~ 360 (362)
..+|-
T Consensus 1333 ~~~p~ 1337 (1431)
T KOG1240|consen 1333 PTRPE 1337 (1431)
T ss_pred CCCcc
Confidence 98874
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=9.6e-13 Score=116.83 Aligned_cols=223 Identities=19% Similarity=0.310 Sum_probs=144.3
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---c-eeEEEe
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---D-KLFSAH 85 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~-~l~s~~ 85 (362)
-+.|.||++-|.+|.|. |.+|++||.|-.+.|||.... ++. ..+...|.+.|.++.+.+ + .+++|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--Kll------hsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--KLL------HSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc--cee------eeeecccccceeEEeeeccCCCeEEEecc
Confidence 34688999999999994 899999999999999996421 111 122234567777877653 3 488999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCC
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDR 164 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~ 164 (362)
.|..|+++|+......... .+. ......+.-|.++|--++..|++ ..+.++++||
T Consensus 115 gDk~i~lfdl~~~~~~~~d---------~~~---------------~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMD---------HGM---------------EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred CcceEEEEecccccccccc---------cCc---------------cchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence 9999999999753211000 000 00011234578888888888988 7899999999
Q ss_pred cEEEEECCCceE-EE------eeeccC--cccEEEEEEcCCCc--EEEEeCCCeEEEEeCCC--------CCCcce----
Q 044557 165 TIKIWRTSDFKC-LE------SITNAH--DDAINAVALSDDGD--VYTGSADKKIKVWRRSP--------GNKKHS---- 221 (362)
Q Consensus 165 ~i~iwd~~~~~~-~~------~~~~~h--~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~--------~~~~~~---- 221 (362)
+|+-+|++.... -. .+..-+ --...++.++|... |+.|+.|-..++||..- +.....
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~ 250 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKD 250 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcc
Confidence 999999987431 11 111111 12457888998764 78899999999999321 110000
Q ss_pred --eeh-hhhcc--------c---cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcE
Q 044557 222 --LVD-VLERH--------N---SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI 266 (362)
Q Consensus 222 --~~~-~~~~h--------~---~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 266 (362)
+.. ...+| . ..++-+.|+|+|.-|+..=.--.|+++|+...+...
T Consensus 251 ~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 251 CRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred cchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 000 00111 1 124667899999877766555679999987655443
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.46 E-value=8.5e-14 Score=128.87 Aligned_cols=192 Identities=26% Similarity=0.376 Sum_probs=140.0
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
.+|...|.|+.|...|.++++|+.|..++||.+++..++.... +|++.|+.++.+.++. +++++.|..|++|.+.++.
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 4788999999999999999999999999999999999988774 8999999999988775 7889999999999998775
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEe--CCeEEEeeC
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVV--SDLVCSGSA 294 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~--~~~~~s~s~ 294 (362)
.+..+.+|.+.|++|+|+|-. +.+.||++++||.+-. .....-..++... ..+-++-+. .+-++|++.
T Consensus 266 ----pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 266 ----PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred ----hHHHHhccccceeeeccCccc----cCCCCCceEecccccc-ccccCCCCCCcccccceeeeeccccccccccccC
Confidence 456788999999999999954 7889999999998721 1001101111112 233344443 346899999
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|+.-+.|.... +..|...+.-+.++. +...+.+++-.|..+.+|++
T Consensus 337 d~ea~n~e~~~--------l~~~~~~lif~t~ss--------d~~~~~~~ar~~~~~~vwnl 382 (1113)
T KOG0644|consen 337 DGEARNHEFEQ--------LAWRSNLLIFVTRSS--------DLSSIVVTARNDHRLCVWNL 382 (1113)
T ss_pred CcccccchhhH--------hhhhccceEEEeccc--------cccccceeeeeeeEeeeeec
Confidence 99999996421 233433332222211 12235566667778888887
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.46 E-value=1.4e-12 Score=118.21 Aligned_cols=197 Identities=20% Similarity=0.314 Sum_probs=147.4
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
-|..++|.|||..|+.+. +..+.+||.+++..++++. +|.+.|.+++|+.+|+ +++|+.|+.|.+|...-.. .+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---IL 88 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccccc---ee
Confidence 578899999999877665 5788999999999999885 8999999999999997 8899999999999643211 11
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRI 300 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~ 300 (362)
-..|...|.|+.|.|-.+.|++++.. ..-+|+.+... . ... ....++.+.+|..+ +++-|-.||+|.+
T Consensus 89 ---kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~--V---~K~-kss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 89 ---KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS--V---SKH-KSSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ---eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh--H---Hhh-hhheeEEEeeecCCCcEEEEeccCceEEe
Confidence 12589999999999999999999864 34578765321 1 011 12345677788644 8999999999998
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
=+........+..--|-.++|++++|+|... .+...+++...+..++-++.++..
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg----~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSG----EGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCC----CCccceEEEEeccceeEEEEecce
Confidence 7643322222333446788999999998754 233357888999999999888654
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1.9e-11 Score=104.55 Aligned_cols=267 Identities=16% Similarity=0.236 Sum_probs=169.2
Q ss_pred ccceeeeEec----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEe
Q 044557 19 NSYVSSLALA----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWK 94 (362)
Q Consensus 19 ~~~V~~l~~~----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~ 94 (362)
...|.++.|. .+.++.++.|..+....++... ..... .+......+.+++..+......|++|-.+|.+++|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~--~~s~~-~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFE--ISSSL-DDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCc--ccccc-ccccccccccccccchhhcCCEEEEEecCCcEEEEe
Confidence 3455566662 2355656566666666554221 11000 011123345566777777778899999999999999
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECC--CcEEEEEC
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWD--RTIKIWRT 171 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d--~~i~iwd~ 171 (362)
.+.+.....+...+... ..+..+.-++.. .++++|+.. ..++|||+
T Consensus 132 ~k~~d~hss~l~~la~g-------------------------------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-------------------------------PGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccCCccccccceeeecC-------------------------------CceeeeccCCCCCceEecCchhcccceeeeec
Confidence 87554322222222111 122233333333 456669988 89999999
Q ss_pred CCceEEEeeecc------Ccc--cEEEEEEcCC---CcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 172 SDFKCLESITNA------HDD--AINAVALSDD---GDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 172 ~~~~~~~~~~~~------h~~--~v~~v~~~~~---~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
+..+.+-.-... -.- .++++.|-++ .+|++++.-+.|++||...+... ...+.--..+++++...|
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP---V~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP---VAQFDFLENPISSTGLTP 257 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc---eeEeccccCcceeeeecC
Confidence 877544321111 112 3456778655 35999999999999998866432 223333467899999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
.+++|++|..-+.+..||.+... .....+++-++.|+++...+. ++++++-|+.+||+|...+ ++++... -+
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~k---l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr--kll~kvY-vK 331 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGK---LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR--KLLHKVY-VK 331 (412)
T ss_pred CCcEEEEecccchhheecccCce---eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc--hhhhhhh-hh
Confidence 99999999999999999997532 233347888899999988766 9999999999999996442 2232211 13
Q ss_pred CcEEEEEeee
Q 044557 319 GPVKCLAAAI 328 (362)
Q Consensus 319 ~~v~~~~~~~ 328 (362)
+..+++.+.+
T Consensus 332 s~lt~il~~~ 341 (412)
T KOG3881|consen 332 SRLTFILLRD 341 (412)
T ss_pred ccccEEEecC
Confidence 3455555543
No 212
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.44 E-value=1.9e-11 Score=102.92 Aligned_cols=247 Identities=17% Similarity=0.283 Sum_probs=158.2
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~ 85 (362)
-+++.++||.+.|++.... ..-+++.+.|.++|||--.... ++.+. +-..-..+++++.... .+|+.+-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~-----q~wps--I~~~mP~~~~~~~y~~e~~~L~vg~ 87 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG-----QYWPS--IYHYMPSPCSAMEYVSESRRLYVGQ 87 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc-----ccCch--hhhhCCCCceEeeeeccceEEEEEE
Confidence 3677889999999988774 4569999999999999532211 11110 0001122444554433 2477777
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
..|++.-+.+...- .++.. ...+..|..++..+-|+.....+++.+.|..
T Consensus 88 ~ngtvtefs~sedf------nkm~~------------------------~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~ 137 (404)
T KOG1409|consen 88 DNGTVTEFALSEDF------NKMTF------------------------LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ 137 (404)
T ss_pred ecceEEEEEhhhhh------hhcch------------------------hhhhhhhhcceeeEEecCCceeEEEeccccc
Confidence 77887777553210 00000 0112358888999999888889999999988
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDG---DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
+.--=.+.+..+.... ..+.+..++- ..+.|...|.|.+-.+.... ..++..+.+|..++.+++|.|..
T Consensus 138 ~~~hc~e~~~~lg~Y~------~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~--~~~i~~~~~h~~~~~~l~Wd~~~ 209 (404)
T KOG1409|consen 138 FAWHCTESGNRLGGYN------FETPASALQFDALYAFVGDHSGQITMLKLEQNG--CQLITTFNGHTGEVTCLKWDPGQ 209 (404)
T ss_pred eEEEeeccCCcccceE------eeccCCCCceeeEEEEecccccceEEEEEeecC--CceEEEEcCcccceEEEEEcCCC
Confidence 7544444443332211 0001101110 12345555666655544332 23456678899999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCC
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~ 304 (362)
..|++|..|..+.+||+....+ ....+.+|.+.|..+.+.+ ..+.++++||.|-+|+..
T Consensus 210 ~~LfSg~~d~~vi~wdigg~~g---~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 210 RLLFSGASDHSVIMWDIGGRKG---TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred cEEEeccccCceEEEeccCCcc---eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 9999999999999999975433 3445778999998887753 479999999999999853
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=2.6e-11 Score=103.68 Aligned_cols=210 Identities=12% Similarity=0.216 Sum_probs=142.5
Q ss_pred cccCccceeeeEecCcEEEEecCCCeEEEeecCCCC--cccceeeeccceeEEeecceeEEE---EEcCceeEEEecC--
Q 044557 15 LKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFS--SELDQEFLSNNNIVAVGKGAVKSL---VVLADKLFSAHQD-- 87 (362)
Q Consensus 15 l~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~i---~~~~~~l~s~~~d-- 87 (362)
..+-.++|..+......|++|-.+|.+++|..+... ......+. .+ ..+..+ .-.+..+++|+..
T Consensus 101 ~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-------~g-~g~~~~r~~~~~p~Iva~GGke~~ 172 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-------TG-PGLYDVRQTDTDPYIVATGGKENI 172 (412)
T ss_pred cccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeee-------cC-CceeeeccCCCCCceEecCchhcc
Confidence 344566677777666789999999999999977432 11111111 11 111111 1123346678888
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC--CCEEEEEECCCc
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDRT 165 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~ 165 (362)
..+++||++...+ .+.. ..+| +....+ . -.-.++.+.|-+. ...||+++.-+.
T Consensus 173 n~lkiwdle~~~q---iw~a-KNvp------------nD~L~L---r------VPvW~tdi~Fl~g~~~~~fat~T~~hq 227 (412)
T KOG3881|consen 173 NELKIWDLEQSKQ---IWSA-KNVP------------NDRLGL---R------VPVWITDIRFLEGSPNYKFATITRYHQ 227 (412)
T ss_pred cceeeeeccccee---eeec-cCCC------------Cccccc---e------eeeeeccceecCCCCCceEEEEeccee
Confidence 8899999976431 1110 0010 000000 0 1123567778776 778999999999
Q ss_pred EEEEECCCce-EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 166 IKIWRTSDFK-CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 166 i~iwd~~~~~-~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
||+||.+.++ ++..+. --+.++.++...|++. +++|..-|.+..||...+.. +...+++-.+.|++|..+|+..
T Consensus 228 vR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl---~g~~~kg~tGsirsih~hp~~~ 303 (412)
T KOG3881|consen 228 VRLYDTRHQRRPVAQFD-FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL---LGCGLKGITGSIRSIHCHPTHP 303 (412)
T ss_pred EEEecCcccCcceeEec-cccCcceeeeecCCCcEEEEecccchhheecccCcee---eccccCCccCCcceEEEcCCCc
Confidence 9999998654 455554 3466899999999997 78999999999999987642 2223566788999999999999
Q ss_pred EEEEEcCCCcEEEEeccC
Q 044557 244 VLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~ 261 (362)
+|+++|.|+.+|++|.++
T Consensus 304 ~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 304 VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eEEeeccceeEEEeeccc
Confidence 999999999999999986
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.38 E-value=8.1e-13 Score=115.04 Aligned_cols=189 Identities=15% Similarity=0.213 Sum_probs=148.8
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
..+.++.+|++|+.|+..|.|..+|..+.+....+. -...|.++.|..+.++++....+.+.|||-.. . -+.+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G-t----ElHC 205 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG-T----ELHC 205 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhhhceEEEecCCC-c----EEee
Confidence 467889999999999999999999999998777664 34578899998888888888999999998542 2 2344
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeC
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRG 303 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~ 303 (362)
++. ..+|..+.|-|---+|++++..|.++.-|+..+. ++..+..-.+.+..|...| -.+-+|...|+|-+|+-
T Consensus 206 lk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk----lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 206 LKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK----LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred hhh-cCchhhhcccchhheeeecccCCceEEEeechhh----hhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 444 3578999999988889999999999999987643 3344444455555555554 37889999999999984
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.. -.++..+..|.++|.++|+.+ +|+|+||+|.|..++|||+.
T Consensus 281 ~s--kePLvKiLcH~g~V~siAv~~---------~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 281 NS--KEPLVKILCHRGPVSSIAVDR---------GGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred CC--cchHHHHHhcCCCcceEEECC---------CCcEEeecccccceeEeeec
Confidence 33 344666778999999999964 45789999999999999995
No 215
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=2.1e-11 Score=102.59 Aligned_cols=208 Identities=22% Similarity=0.321 Sum_probs=153.5
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEEC-CCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRT-SDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~-~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
+|.+.+.....-|-..-+++.+.|.++|||-- +.++-...+......+++++.+.++.+ |+.|-.+|++.-+.+...-
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 56777777777777777999999999999953 334444444444456788888888876 7788889999999876554
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC----------------------------------
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD---------------------------------- 263 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~---------------------------------- 263 (362)
++.........|..+|..+.|+.....+++.+.|..+.---.+.+.
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr 181 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLK 181 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEE
Confidence 4444555666799999999999888999999988876322111100
Q ss_pred ---CcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCC
Q 044557 264 ---GNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDT 338 (362)
Q Consensus 264 ---~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~ 338 (362)
.....+..+.+|.+.+.+++|.+. .+.+|+.|..|.+||+..+++ ....+.||...|..+...+ .
T Consensus 182 ~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~---------~ 251 (404)
T KOG1409|consen 182 LEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQ---------H 251 (404)
T ss_pred EeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhh---------h
Confidence 011234457789999999999754 899999999999999765544 3557889999998775432 2
Q ss_pred ceEEEecCCCCcEEEEecc
Q 044557 339 SYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 339 ~~~l~s~s~D~~i~~W~~~ 357 (362)
.+.|.|++.||.|-+||+.
T Consensus 252 t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred heeeeeccCCCeEEEEecc
Confidence 3458899999999999985
No 216
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2e-11 Score=107.08 Aligned_cols=251 Identities=17% Similarity=0.192 Sum_probs=165.0
Q ss_pred EEeecceeEEEEEc--CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 64 VAVGKGAVKSLVVL--ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 64 ~~~~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
+..|.+.|..+.++ ++.|++++.|..|.+||+..+.+.... ..+|
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f---------------------------------~SGH 184 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF---------------------------------ESGH 184 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc---------------------------------cccc
Confidence 34567778888776 456999999999999998765432100 0134
Q ss_pred cCceeEEEEec--CCCEEEEEECCCcEEEEECCC-ceEE-EeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCC
Q 044557 142 VDAVSALALTK--DETLLYSVSWDRTIKIWRTSD-FKCL-ESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~-~~~~-~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~ 215 (362)
...|.-..|-| +.+-+++++.||.+++=.+.. +.+. ......|.++|.-++.-|+.. |++++.|+.|.-+|+..
T Consensus 185 ~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~ 264 (559)
T KOG1334|consen 185 CNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ 264 (559)
T ss_pred ccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeecc
Confidence 44444445544 346789999999999876543 3232 122346899999999988763 99999999999999987
Q ss_pred CCCcceeehhhhcccc---ceeEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcE--EEEEee-c-----CccceeEEEE
Q 044557 216 GNKKHSLVDVLERHNS---GINALALSCDGS-VLYSGACDRSIIVWEKEEDDGNI--LVVGAL-R-----GHTKSILCMA 283 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~---~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~-~-----~h~~~v~~~~ 283 (362)
......+. +...+.. ....|+..|-+. .+++|+.|-.+|+||.+.-.... ..+..+ + .....|+|+.
T Consensus 265 ~~pa~~~~-cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~ 343 (559)
T KOG1334|consen 265 DVPAEKFV-CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV 343 (559)
T ss_pred CCccceee-eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE
Confidence 76544333 2222333 457788888554 89999999999999976432210 001111 1 1223588999
Q ss_pred EeC--CeEEEeeCCCcEEEeeCCCCce----------eeeeE-ecCCCCc--EEEEEeeecCCccCCCCCceEEEecCCC
Q 044557 284 VVS--DLVCSGSADKTIRIWRGIDRNY----------TCLAV-LEGHRGP--VKCLAAAIDNDRCDSSDTSYLVCSGSLD 348 (362)
Q Consensus 284 ~~~--~~~~s~s~D~~i~~W~~~~~~~----------~~~~~-l~~h~~~--v~~~~~~~~~~~~~~~~~~~~l~s~s~D 348 (362)
|+. .-+.++-.|-.|.++.-....+ ..++. ++||.+. |.++-| +.|...|++|||+=
T Consensus 344 Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF--------fGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 344 YSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF--------FGPRSEYVVSGSDC 415 (559)
T ss_pred ecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeee--------ccCccceEEecCcc
Confidence 972 2455556677788885221111 23343 8899764 554433 45667899999999
Q ss_pred CcEEEEec
Q 044557 349 CDIKVWQI 356 (362)
Q Consensus 349 ~~i~~W~~ 356 (362)
|.|-||+-
T Consensus 416 GhIFiW~K 423 (559)
T KOG1334|consen 416 GHIFIWDK 423 (559)
T ss_pred ceEEEEec
Confidence 99999985
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=7.9e-11 Score=109.15 Aligned_cols=220 Identities=13% Similarity=0.093 Sum_probs=132.2
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCC---CeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSD---NEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~D---g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
..+.|..|...+.+..|+ |++|+.++.+ ..|++||+.+........ ..+....+.+++| .|+.
T Consensus 195 ~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----------~~g~~~~~~wSPDG~~La~ 264 (429)
T PRK01742 195 NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS----------FRGHNGAPAFSPDGSRLAF 264 (429)
T ss_pred CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----------CCCccCceeECCCCCEEEE
Confidence 345677788889999985 7788877654 479999986533111111 1122334556654 4555
Q ss_pred E-ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-
Q 044557 84 A-HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS- 161 (362)
Q Consensus 84 ~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s- 161 (362)
+ +.+|.+.+|.++..... ... +..+...+....|+||++.|+.++
T Consensus 265 ~~~~~g~~~Iy~~d~~~~~---~~~------------------------------lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 265 ASSKDGVLNIYVMGANGGT---PSQ------------------------------LTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred EEecCCcEEEEEEECCCCC---eEe------------------------------eccCCCCcCCEEECCCCCEEEEEEC
Confidence 4 46887777754321100 000 011233456788999999776555
Q ss_pred CCCcEEEEECCCc-eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 162 WDRTIKIWRTSDF-KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 162 ~d~~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
.++...||++... .....+ .+.. ....|+|+|+ ++..+.++ +.+||+.++... .+.. .+ ....+.|+
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l--~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-~lt~---~~--~~~~~~~s 380 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLV--GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-VLSS---TF--LDESPSIS 380 (429)
T ss_pred CCCCceEEEEECCCCCeEEe--cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-EecC---CC--CCCCceEC
Confidence 5788888876432 112222 2332 3567999997 55555555 555898776432 1111 11 23457899
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 286 (362)
|||++|+.++.++.+.+|.+....+. ....+.+|.+.+...+|++
T Consensus 381 PdG~~i~~~s~~g~~~~l~~~~~~G~--~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 381 PNGIMIIYSSTQGLGKVLQLVSADGR--FKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCC--ceEEccCCCCCCCCcccCC
Confidence 99999999999999988876432222 2334566777677666665
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=9.3e-11 Score=96.08 Aligned_cols=145 Identities=19% Similarity=0.284 Sum_probs=94.5
Q ss_pred EEEEecCCCEEEEEEC---C-------CcEEEEECCCc-eEEEeeeccCcccEEEEEEcCCCc-EE--EEeCCCeEEEEe
Q 044557 147 ALALTKDETLLYSVSW---D-------RTIKIWRTSDF-KCLESITNAHDDAINAVALSDDGD-VY--TGSADKKIKVWR 212 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~---d-------~~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~-~~--s~~~dg~i~iw~ 212 (362)
.+.|+|+|.+|+.-.. | +...+|.++.. .....+.....++|.+++|+|+|. ++ .|..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4567777776554332 1 23555555322 233344334456799999999986 44 345678999999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-- 287 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-- 287 (362)
++ .... ..+ +...++.|.|+|+|++|++|+.+ |.|.+||.++.+ .+.... |. .+..++|+|+
T Consensus 90 ~~-~~~i----~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~----~i~~~~-~~-~~t~~~WsPdGr 156 (194)
T PF08662_consen 90 VK-GKKI----FSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK----KISTFE-HS-DATDVEWSPDGR 156 (194)
T ss_pred Cc-ccEe----Eee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE----Eeeccc-cC-cEEEEEEcCCCC
Confidence 86 2222 122 35677899999999999998754 569999997422 233322 33 4678888765
Q ss_pred eEEEee------CCCcEEEeeCC
Q 044557 288 LVCSGS------ADKTIRIWRGI 304 (362)
Q Consensus 288 ~~~s~s------~D~~i~~W~~~ 304 (362)
++++++ .|..++||+..
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEEeccceeccccEEEEEec
Confidence 777665 38999999864
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.33 E-value=4.3e-12 Score=110.58 Aligned_cols=272 Identities=17% Similarity=0.227 Sum_probs=174.2
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-ceeEEEecCCcEEEEecCCCCCCcccce
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-DKLFSAHQDHKIRVWKINNQEPDHQKYT 106 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 106 (362)
+|.+++-|+.-|.+-.+|..+.. +..++. -...|..+.+.. +.++...+...+.+||-..-+
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~--L~~Ei~--------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE------- 202 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKK--LHFEIN--------VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE------- 202 (545)
T ss_pred CccEEEecCCccceeeeecccce--eeeeee--------hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE-------
Confidence 47888999999999888865532 111110 012333333332 335666777788888754321
Q ss_pred eeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcc
Q 044557 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD 186 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~ 186 (362)
+.++. ....|.-+.|-|.=-+|++++..|.++.-|+..++.+..+.. -.+
T Consensus 203 -lHClk----------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G 252 (545)
T KOG1272|consen 203 -LHCLK----------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAG 252 (545)
T ss_pred -Eeehh----------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCC
Confidence 11111 123456677778777899999999999999999998876653 345
Q ss_pred cEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCc
Q 044557 187 AINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGN 265 (362)
Q Consensus 187 ~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~ 265 (362)
.+..++-+|-+. +-+|...|+|.+|.....++ +..+-.|.++|.+|++.++|.|++|.|.|..+++||++....
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP----LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q- 327 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP----LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ- 327 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcch----HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc-
Confidence 677788888776 55899999999998765443 334456999999999999999999999999999999986431
Q ss_pred EEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCC-ceeeeeEecCC--CCcEEEEEeeecCCccC-CC--CCc
Q 044557 266 ILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDR-NYTCLAVLEGH--RGPVKCLAAAIDNDRCD-SS--DTS 339 (362)
Q Consensus 266 ~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~-~~~~~~~l~~h--~~~v~~~~~~~~~~~~~-~~--~~~ 339 (362)
+.+... .-....++++...++..|....|.+|.-... ...+-.-+..| ...|.++.|.|-.+..- .. +-.
T Consensus 328 ---l~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 328 ---LHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGIT 403 (545)
T ss_pred ---cceeec-CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCce
Confidence 111111 1234567777766666677678999962111 11111111112 23788888887654211 01 112
Q ss_pred eEEEecCCCCcEEEEe
Q 044557 340 YLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 340 ~~l~s~s~D~~i~~W~ 355 (362)
.+|+-|+.|=..--|.
T Consensus 404 silVPGsGePN~Ds~e 419 (545)
T KOG1272|consen 404 SILVPGSGEPNYDSLE 419 (545)
T ss_pred eEeccCCCCCCcchhc
Confidence 4677787765544443
No 220
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=8.6e-11 Score=111.88 Aligned_cols=188 Identities=19% Similarity=0.251 Sum_probs=135.6
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
..+.++.+..+..+-+||...... ..+...+..+.... . .-+....+ ++++|+.-+.|-+|+.......
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~--~~~i~~~er~~l~~-~--~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p---- 168 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSV--LSKIQSDERCTLYS-S--LIIGDSAEELYIASGSVFGEIIVWKPHEDNKP---- 168 (967)
T ss_pred hcceEEEEEcCceEEEEecccCce--ehhcCCCceEEEEe-E--EEEeccCcEEEEEeccccccEEEEeccccCCc----
Confidence 456788888889999998653211 11111111111100 0 00111223 4777888899999987622110
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCc
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~ 185 (362)
....+|.+.+..+.++.||++++++|+|+++|+|++++.+......-+|+
T Consensus 169 ------------------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 169 ------------------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred ------------------------------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 01247999999999999999999999999999999999887664445899
Q ss_pred ccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccc-cceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 186 DAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHN-SGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 186 ~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~-~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
..|+.++|.|. ++++++.|-+.++|+.... ...++.+|. ..+..++++++...++|++.|+.+++|++.
T Consensus 219 aRvw~~~~~~n-~i~t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 219 ARVWACCFLPN-RIITVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ceeEEEEeccc-eeEEeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 99999999998 8999999999999965432 222556665 468999999999999999999999999864
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.30 E-value=2.8e-11 Score=107.42 Aligned_cols=200 Identities=14% Similarity=0.239 Sum_probs=137.7
Q ss_pred cCCCEEEEEECCCcEEEEECCCceEEEee---eccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCC----cc--
Q 044557 152 KDETLLYSVSWDRTIKIWRTSDFKCLESI---TNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNK----KH-- 220 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~----~~-- 220 (362)
|.+--|..|-.-|.|.+.|....+..+.+ .......|+++.|-|.+. ++.+-.+|.+.+||...... ..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 44545666777788888876543221111 112346799999987653 77788899999997532110 00
Q ss_pred -------ee---eh--------hhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE
Q 044557 221 -------SL---VD--------VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM 282 (362)
Q Consensus 221 -------~~---~~--------~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~ 282 (362)
.+ .. ...--...|+.++|+|||++||+-|.||.+|+||..+.+ ++..++.--+..+|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e----Llg~mkSYFGGLLCv 338 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE----LLGVMKSYFGGLLCV 338 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH----HHHHHHhhccceEEE
Confidence 00 00 001113467889999999999999999999999987532 334444445678999
Q ss_pred EEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc--------------------------cC
Q 044557 283 AVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR--------------------------CD 334 (362)
Q Consensus 283 ~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~--------------------------~~ 334 (362)
+|++| +|++|++|.-|.+|...+ .+.++.-+||+++|..++|.|--.. ..
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf~e--rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~ 416 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSFEE--RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGT 416 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEecc--ceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCC
Confidence 99876 999999999999999755 3568888999999999999831000 00
Q ss_pred C-------------CCCceEEEecCCCCcEEEEecc
Q 044557 335 S-------------SDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 335 ~-------------~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ +...+-+.|.+.|..+-|||+.
T Consensus 417 ~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt 452 (636)
T KOG2394|consen 417 GSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT 452 (636)
T ss_pred CCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence 0 0134678999999999999984
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.30 E-value=3.2e-09 Score=88.84 Aligned_cols=177 Identities=20% Similarity=0.305 Sum_probs=120.7
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
+.|.|||-...+++.++. ...+|.+|.+.++. +..-..+.|.||...+.-.....+.+.. .+.+..+++-..+..
T Consensus 75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~r~r--iVvvl~~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS--FNSEIKAVKLRRDR--IVVVLENKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEE--eccceeeEEEcCCe--EEEEecCeEEEEEcCCChhheeeeeccc-CCCceEeecCCCCce
Confidence 579999966666776664 57899999999764 2333567899998864322222222221 233344333333444
Q ss_pred EEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCc-EEEeeCCCCceeeeeEecC--C
Q 044557 244 VLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKT-IRIWRGIDRNYTCLAVLEG--H 317 (362)
Q Consensus 244 ~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~-i~~W~~~~~~~~~~~~l~~--h 317 (362)
+|+-- -.-|.|.+-|+...... ....+.+|...|.|++.. +.++||+|..|+ ||||+.. .+..++.+.. -
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~--~g~~l~E~RRG~d 225 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE--DGTLLQELRRGVD 225 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC--CCcEeeeeecCCc
Confidence 55533 35689999998764431 112356899999999986 559999999999 8999953 4556666652 2
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...|.+++|+|+. .+||.+|+-||+.|+.+.-
T Consensus 226 ~A~iy~iaFSp~~---------s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 226 RADIYCIAFSPNS---------SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred hheEEEEEeCCCc---------cEEEEEcCCCeEEEEEeec
Confidence 4479999998764 4799999999999999853
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.29 E-value=1.1e-10 Score=95.57 Aligned_cols=109 Identities=17% Similarity=0.302 Sum_probs=81.2
Q ss_pred cCceeEEEEecCCCEEEEE--ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe---CCCeEEEEeCCC
Q 044557 142 VDAVSALALTKDETLLYSV--SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS---ADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~---~dg~i~iw~~~~ 215 (362)
.++|.+++|+|+++.||+. ..++.|.+||++ .+.+..+ +...++.+.|+|+|+ ++.++ ..|.|.+||..+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 3569999999999987655 356799999997 4444444 346778999999998 55554 357899999985
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC------CCcEEEEecc
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC------DRSIIVWEKE 260 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~------d~~i~~wd~~ 260 (362)
.+. +... .| ..++.++|+|||++++++.. |+.+++|+..
T Consensus 135 ~~~----i~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 135 KKK----ISTF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CEE----eecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 432 2222 23 34789999999999998875 7888999875
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.29 E-value=2.6e-09 Score=89.34 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=106.5
Q ss_pred cceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeE
Q 044557 68 KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSA 147 (362)
Q Consensus 68 ~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 147 (362)
..+|.++.+..++++..- .+.|.+|....... ....+.+.+. | ...-+
T Consensus 94 ~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k---~l~~~et~~N----------P------------------kGlC~ 141 (346)
T KOG2111|consen 94 NSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPK---LLHVIETRSN----------P------------------KGLCS 141 (346)
T ss_pred ccceeeEEEcCCeEEEEe-cCeEEEEEcCCChh---heeeeecccC----------C------------------CceEe
Confidence 457888888888877665 56899998753210 0000100000 0 01111
Q ss_pred EEEecCCCEEEEE-ECCCcEEEEECCCceE-EEeeeccCcccEEEEEEcCCCc-EEEEeCCCe-EEEEeCCCCCCcceee
Q 044557 148 LALTKDETLLYSV-SWDRTIKIWRTSDFKC-LESITNAHDDAINAVALSDDGD-VYTGSADKK-IKVWRRSPGNKKHSLV 223 (362)
Q Consensus 148 ~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~-~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~-i~iw~~~~~~~~~~~~ 223 (362)
+.-+.+..+||-- -.-|.|+|-|+...+. ...+..+|...|.|++++.+|. ++|++..|+ |||||..++...+.+-
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee
Confidence 1112222333332 2348899999876554 2234468999999999999997 788999986 8999999987554431
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCC
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEED 262 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~ 262 (362)
. ..-...|.+|+|||+..+|+++|..|++.++.++..
T Consensus 222 R--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 222 R--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred c--CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 1 113467999999999999999999999999998753
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.2e-09 Score=96.35 Aligned_cols=273 Identities=15% Similarity=0.260 Sum_probs=162.2
Q ss_pred cCccceeeeEe--cCcE-EEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEEecCCcEE
Q 044557 17 GHNSYVSSLAL--AGKF-LYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSAHQDHKIR 91 (362)
Q Consensus 17 gH~~~V~~l~~--~~~~-l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~~~dg~i~ 91 (362)
+|....+.|.. +|+| +|||-.--.|++||+.......... .....|.-..++.|. ++.-..|++|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh---------lDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH---------LDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec---------ccccceeEEEeccchhhheEeecCceee
Confidence 46677777777 4787 5778888999999987644222111 112233333333332 44445566665
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
+...-... . ..+ +| ..-..++++.-..-|+.++....|.-.++
T Consensus 120 fHak~G~h---y-~~R---IP------------------------------~~GRDm~y~~~scDly~~gsg~evYRlNL 162 (703)
T KOG2321|consen 120 FHAKYGRH---Y-RTR---IP------------------------------KFGRDMKYHKPSCDLYLVGSGSEVYRLNL 162 (703)
T ss_pred ehhhcCee---e-eee---cC------------------------------cCCccccccCCCccEEEeecCcceEEEEc
Confidence 54221000 0 000 00 00123444433333455555667878899
Q ss_pred CCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee--hhhhcccc-----ceeEEEEecCCC
Q 044557 172 SDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV--DVLERHNS-----GINALALSCDGS 243 (362)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~--~~~~~h~~-----~v~~i~~s~~~~ 243 (362)
+.++.+..+. ...+.+++|.+++-.. +++|+.||.|..||..+.....++. .....|.. .|+++.|+.+|-
T Consensus 163 EqGrfL~P~~-~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL 241 (703)
T KOG2321|consen 163 EQGRFLNPFE-TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL 241 (703)
T ss_pred cccccccccc-cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce
Confidence 9998887765 3457899999998765 5667779999999987654322221 11122333 399999999999
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc--ceeEEEEEeC----CeEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHT--KSILCMAVVS----DLVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~--~~v~~~~~~~----~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
.+++|..+|.|.+||++...+- .+ +.|. -+|..+.|.+ +.++|.. ...+|||+.. .++....++.-
T Consensus 242 ~~aVGts~G~v~iyDLRa~~pl--~~---kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~--~Gk~~asiEpt 313 (703)
T KOG2321|consen 242 HVAVGTSTGSVLIYDLRASKPL--LV---KDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDEC--TGKPMASIEPT 313 (703)
T ss_pred eEEeeccCCcEEEEEcccCCce--ee---cccCCccceeeecccccCCCceEEecc-hHHhhhcccc--cCCceeecccc
Confidence 9999999999999999975432 22 3344 4566777742 2444433 3678999843 34445555543
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
.+ ++.+.+.|+ +| ++.+|=.++.+..+
T Consensus 314 ~~-lND~C~~p~--------sG-m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 314 SD-LNDFCFVPG--------SG-MFFTANESSKMHTY 340 (703)
T ss_pred CC-cCceeeecC--------Cc-eEEEecCCCcceeE
Confidence 33 777766654 33 34456555555444
No 226
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=6.1e-10 Score=100.24 Aligned_cols=195 Identities=14% Similarity=0.249 Sum_probs=142.2
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeeecc-C-cccEEEEEE------cC-------------CCc--EEEEeCCCe
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESITNA-H-DDAINAVAL------SD-------------DGD--VYTGSADKK 207 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-h-~~~v~~v~~------~~-------------~~~--~~s~~~dg~ 207 (362)
+|...++|....||.+|||+....+....+... + ++...+..| +| .+. ++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 345678999999999999999988766555321 1 111222222 22 122 556888999
Q ss_pred EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC
Q 044557 208 IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 208 i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (362)
|.+|++..++...++. -..|.++|+++.++.+-..|.+++.|+.+.+|+..+. ..+..+++-...+.++.++++
T Consensus 82 v~~ys~~~g~it~~~s--t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLS--TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----VIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred EEEEEecCCeEEEEEe--cCCCCCcceeeecccccCceEecCCceeEEEEecccc----eeeeeeccCCCccceEEEcCC
Confidence 9999998776444332 2469999999999999999999999999999998653 245556666777888888877
Q ss_pred --eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 288 --LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 288 --~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+++++| +.|++|+++. .+.+..+.||.++|.+++|..+-+. ..+.++|.+...+.-|-+|.+..
T Consensus 156 ~~~l~~as--~~ik~~~~~~--kevv~~ftgh~s~v~t~~f~~~~~g---~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIET--KEVVITFTGHGSPVRTLSFTTLIDG---IIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCEEEecc--ceEEEEEccC--ceEEEEecCCCcceEEEEEEEeccc---cccceeeeccccccceeEEEEEc
Confidence 777777 6899999754 4668899999999999999866111 12346677777788899998754
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=5.1e-10 Score=94.44 Aligned_cols=300 Identities=18% Similarity=0.274 Sum_probs=165.6
Q ss_pred ccceeeeEe--cCcEEEEecCCCeEEEeecCCCCc-c--cceeeec---cceeE-E-eecceeEEEEEcCc----eeEEE
Q 044557 19 NSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSS-E--LDQEFLS---NNNIV-A-VGKGAVKSLVVLAD----KLFSA 84 (362)
Q Consensus 19 ~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~-~--~~~~~~~---~~~~~-~-~~~~~v~~i~~~~~----~l~s~ 84 (362)
.+-|.+|.| +|.+||||..+|.|-++.-+.... + ...++.. ....+ + .-...+..+.+..+ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 456788888 499999999999999997543211 0 0111100 00000 0 01234445555432 35566
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|.+|++|.+......... ..++... -...++++... +.+..|-
T Consensus 105 tNdktiKlWKi~er~~k~~~----~~~~~~~-------------------------~~~~~~~lr~p------~~~~~~~ 149 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEG----YNLPEEG-------------------------PPGTITSLRLP------VEGRHDL 149 (433)
T ss_pred cCCcceeeeeeecccccccc----ccccccC-------------------------CCCccceeece------eeccccc
Confidence 77999999998654322100 0000000 01112222111 1111111
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehh----hhccccceeEEEEec
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV----LERHNSGINALALSC 240 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~----~~~h~~~v~~i~~s~ 240 (362)
.+ .-.+.+.+..+|+.-|+++.++.|...+-.+.|-.|.+|+++-......+... +..-..-|++..|+|
T Consensus 150 ~v------ea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp 223 (433)
T KOG1354|consen 150 EV------EASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHP 223 (433)
T ss_pred ee------eeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCH
Confidence 11 11234556678999999999999888776778889999988754433333221 112234578888999
Q ss_pred C-CCEEEEEcCCCcEEEEeccCCC-----CcEEE-------EEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCC
Q 044557 241 D-GSVLYSGACDRSIIVWEKEEDD-----GNILV-------VGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 241 ~-~~~l~s~~~d~~i~~wd~~~~~-----~~~~~-------~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~ 305 (362)
. ...++..+..|+|++.|++... .++.. ..-+.+-...|..+.|+. .+++|-.. -+|++||...
T Consensus 224 ~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 224 HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred hHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 4 5678888889999999987311 10000 000111223566777864 46766554 6899999632
Q ss_pred CceeeeeEecCCCC---cEEEEE---eeecCCccCCCCCceEEEecCCCCcEEEEecccCcc
Q 044557 306 RNYTCLAVLEGHRG---PVKCLA---AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPLV 361 (362)
Q Consensus 306 ~~~~~~~~l~~h~~---~v~~~~---~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~~ 361 (362)
..+++.+..-|.. .+.++. ..-+...|.+++++..++|||.....|+++++..++
T Consensus 303 -e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 303 -EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred -cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 3344555444422 111110 001233456666677899999999999999765543
No 228
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=9.7e-10 Score=98.93 Aligned_cols=141 Identities=18% Similarity=0.312 Sum_probs=112.4
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeee-ccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCCCCCcceeehhhhccc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
+...++-|...|.|-+|++..++.-..+. ..|.+.|.++.++.+- -+.+++.|+.+..|+...... +.....-+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~----~~~~~~~~ 144 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI----IRIWKEQK 144 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee----eeeeccCC
Confidence 44567778889999999999998777665 6799999999988665 489999999999999876542 22334456
Q ss_pred cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-------C-eEEEeeCCCcEEEee
Q 044557 231 SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-------D-LVCSGSADKTIRIWR 302 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~-~~~s~s~D~~i~~W~ 302 (362)
..+.+++++|||..|++|+ ++|++||+++.+ ++..+.||...|.++.|.. . ++.+...+..|.+|.
T Consensus 145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS--RQIKVLDIETKE----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred CccceEEEcCCCCEEEecc--ceEEEEEccCce----EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 6788999999999999997 589999998643 5678999999999998842 3 456666778899996
Q ss_pred C
Q 044557 303 G 303 (362)
Q Consensus 303 ~ 303 (362)
.
T Consensus 219 v 219 (541)
T KOG4547|consen 219 V 219 (541)
T ss_pred E
Confidence 4
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.2e-09 Score=92.80 Aligned_cols=197 Identities=15% Similarity=0.299 Sum_probs=131.9
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcce
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
.++.++|++--..+|++..|-.|++|+-.. ++...+...-...|.+++|-|-+. ++.|+.. -|.+|..+.......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence 467788998877899999999999999776 554555444455799999998763 5555555 589997654321111
Q ss_pred e--------ehh--hhccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--Ce
Q 044557 222 L--------VDV--LERHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DL 288 (362)
Q Consensus 222 ~--------~~~--~~~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 288 (362)
. ... -.+| .+|+++.|.+||..+++++. |..|++||...+.... +. .. -.+.+.-+.|++ +.
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p--L~-~~-glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP--LI-PK-GLGGFSLLKWSPDGDV 252 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--cc-cc-CCCceeeEEEcCCCCE
Confidence 1 011 1223 78999999999999999985 5679999998755432 21 11 234566667765 48
Q ss_pred EEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 289 VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+..++-|+..++|.. .+...+..-..+ ++.|....++|.+. .+|.+.+. .=+++.+.++
T Consensus 253 lfaAt~davfrlw~e-~q~wt~erw~lg-sgrvqtacWspcGs--------fLLf~~sg--sp~lysl~f~ 311 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQE-NQSWTKERWILG-SGRVQTACWSPCGS--------FLLFACSG--SPRLYSLTFD 311 (445)
T ss_pred EEEecccceeeeehh-cccceecceecc-CCceeeeeecCCCC--------EEEEEEcC--CceEEEEeec
Confidence 999999999999974 334444333333 33788887877653 46666653 3445555444
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.17 E-value=1.4e-06 Score=78.45 Aligned_cols=206 Identities=19% Similarity=0.265 Sum_probs=127.2
Q ss_pred ceeEEEEecCCCEEEEEE-CCCcEEEEECCC-ceEEEe---ee---------ccCcccEEEEEEcCCCc-EEEE-eCCCe
Q 044557 144 AVSALALTKDETLLYSVS-WDRTIKIWRTSD-FKCLES---IT---------NAHDDAINAVALSDDGD-VYTG-SADKK 207 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~-~~~~~~---~~---------~~h~~~v~~v~~~~~~~-~~s~-~~dg~ 207 (362)
....++++|++++|+++. .++.|.++++.. +..... +. ........++.++|+|+ +++. -....
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADR 167 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTE
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCE
Confidence 345688999999998887 589999999976 332221 11 01123467899999997 4443 23458
Q ss_pred EEEEeCCCCCCcceeehhhh-ccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCc----c--cee
Q 044557 208 IKVWRRSPGNKKHSLVDVLE-RHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGH----T--KSI 279 (362)
Q Consensus 208 i~iw~~~~~~~~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h----~--~~v 279 (362)
|.+|+++...........+. ........++|+|++++++.. -.+++|.++++......+..+...... . ...
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 99999876542211111111 234567889999999988655 467889999988444444433332211 1 135
Q ss_pred EEEEEeCC---eEEEeeCCCcEEEeeCCC--CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 280 LCMAVVSD---LVCSGSADKTIRIWRGID--RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 280 ~~~~~~~~---~~~s~s~D~~i~~W~~~~--~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
..+.++++ ++++.-.+.+|-+|++.. ...+.+..+.........++++|+++ +++++.-.++.|.+|
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~--------~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR--------YLYVANQDSNTVSVF 319 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS--------EEEEEETTTTEEEEE
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC--------EEEEEecCCCeEEEE
Confidence 66777754 466777788999999733 24444555443344577888876543 466666778889999
Q ss_pred ecc
Q 044557 355 QIS 357 (362)
Q Consensus 355 ~~~ 357 (362)
+++
T Consensus 320 ~~d 322 (345)
T PF10282_consen 320 DID 322 (345)
T ss_dssp EEE
T ss_pred EEe
Confidence 885
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=2.2e-08 Score=92.74 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=100.5
Q ss_pred eEEEEecCCCEEEEE-ECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-CCCeEEEE--eCCCCCC
Q 044557 146 SALALTKDETLLYSV-SWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS-ADKKIKVW--RRSPGNK 218 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~-s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw--~~~~~~~ 218 (362)
....|+|||+.|+.. +.++ .|.+||+++++..+ +. .+...+....|+|+|+ ++..+ .++...+| ++.++..
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 457899999987754 4454 58889998876543 33 2334567889999997 54444 34555555 5554421
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEee
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGS 293 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s 293 (362)
..+ ..+........|+|||++|+..+.+ ..|.+||+.++. ...+.. .+. .....|++ .+++.++
T Consensus 324 -~~l----t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~--~~~--~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 324 -QRI----TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTD--TFL--DETPSIAPNGTMVIYSS 392 (429)
T ss_pred -EEe----ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCC--CCC--CCCceECCCCCEEEEEE
Confidence 122 1223345678899999998876544 357888887543 222211 111 12334544 4788777
Q ss_pred CCCc---EEEeeCCCCceeeeeEecCCCCcEEEEEeee
Q 044557 294 ADKT---IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 294 ~D~~---i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~ 328 (362)
.|+. +.+++.. +.....+.+|...+...+|+|
T Consensus 393 ~~~~~~~l~~~~~~---G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 393 SQGMGSVLNLVSTD---GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred cCCCceEEEEEECC---CCCeEECccCCCCcCCcccCC
Confidence 7765 4555542 233455677877777776654
No 232
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=2.4e-10 Score=114.29 Aligned_cols=191 Identities=17% Similarity=0.283 Sum_probs=144.0
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
.++...|.++.-+|...+-+||+.||.+++|....++.+-.+...-...|+.+.|+.+|. +..+..||.+.+|....
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--
Confidence 456678899999999999999999999999998887766665544457888899987764 88899999999998752
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEc---CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEe
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGA---CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSG 292 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~ 292 (362)
+.....+.|+...+.+.|-. ..+++++ .++.+.+||...+... ..+. ..|.+.++++++.|. .++||
T Consensus 2283 ---k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2283 ---KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred ---cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-ceee--eecCCCceEEEEcCcceEEEec
Confidence 12223456888888888764 6677665 4568999997654332 2333 679999999999876 79999
Q ss_pred eCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 293 SADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 293 s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
+.+|.|++||+..++ +++.+.. . +...++++|+..|.|+||++.-+.
T Consensus 2355 gr~G~v~l~D~rqrq--l~h~~~~-----~--------------~~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQ--LRHTFQA-----L--------------DTREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred CCcCcEEEeehHHHH--HHHHhhh-----h--------------hhhheeeccCcccceEEEEccccc
Confidence 999999999975432 3333322 1 123578999999999999997553
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=4.5e-08 Score=90.74 Aligned_cols=193 Identities=14% Similarity=0.036 Sum_probs=109.4
Q ss_pred cCceeEEEEecCCCEEEEEEC---CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCC--eEEEEeCC
Q 044557 142 VDAVSALALTKDETLLYSVSW---DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADK--KIKVWRRS 214 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg--~i~iw~~~ 214 (362)
...+.+.+|+|||+.|+..+. +..|.+|++.+++... +. .....+...+|+|+|+ ++ +.+.+| .|.+||+.
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-cc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 456788999999998886542 4579999998875432 21 1222344678999997 44 334455 58888987
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEE
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCS 291 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s 291 (362)
++... . +..+...+....|+|||+.|+..+. ++...+|.+.........+ ..+........+++ +.++.
T Consensus 276 tg~~~-~----lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---t~~~~~~~~~~~SpDG~~Ia~ 347 (429)
T PRK03629 276 SGQIR-Q----VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---TWEGSQNQDADVSSDGKFMVM 347 (429)
T ss_pred CCCEE-E----ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---ecCCCCccCEEECCCCCEEEE
Confidence 65422 1 1223446778999999998876665 4455555433222222222 22223334455655 45555
Q ss_pred eeC-C--CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc---EEEEecc
Q 044557 292 GSA-D--KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD---IKVWQIS 357 (362)
Q Consensus 292 ~s~-D--~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~---i~~W~~~ 357 (362)
.+. + ..|.+|+....... .+... .......|+|++ .+|+.++.|+. +.+|++.
T Consensus 348 ~~~~~g~~~I~~~dl~~g~~~---~Lt~~-~~~~~p~~SpDG---------~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 348 VSSNGGQQHIAKQDLATGGVQ---VLTDT-FLDETPSIAPNG---------TMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEccCCCceEEEEECCCCCeE---EeCCC-CCCCCceECCCC---------CEEEEEEcCCCceEEEEEECC
Confidence 443 3 34777886443322 23211 112334555543 44666666654 6677764
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=1.5e-07 Score=87.65 Aligned_cols=176 Identities=12% Similarity=0.004 Sum_probs=105.9
Q ss_pred eecCceeEEEEecCCCEEEEEEC---CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCCe--EEEEe
Q 044557 140 HHVDAVSALALTKDETLLYSVSW---DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSADKK--IKVWR 212 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~--i~iw~ 212 (362)
.|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +. .+.+.+...+|+|+|+ + ++.+.++. |.+||
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 35567889999999998887763 4689999998876532 32 3445667889999997 4 45566665 66668
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CC--cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DR--SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-- 287 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-- 287 (362)
+.++... .+..+........|+|||+.|+..+. ++ .|.++|+.... ...+ ..+...+....|+++
T Consensus 277 ~~~~~~~-----~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~--~~~l---t~~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 277 LRSGTTT-----RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN--PRRI---SFGGGRYSTPVWSPRGD 346 (435)
T ss_pred CCCCceE-----EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC--eEEe---ecCCCcccCeEECCCCC
Confidence 7665321 12334455667899999998886663 33 57777765432 2222 112333444556544
Q ss_pred eEEEeeCC---CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCC
Q 044557 288 LVCSGSAD---KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 288 ~~~s~s~D---~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~ 331 (362)
.++..+.+ ..|.+|+..... ...+. ....+...+|+|+++
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~---~~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSG---ERILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCc---eEecc-CCCCCCCCeECCCCC
Confidence 55554433 346677743222 22222 222355666766543
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.05 E-value=2.7e-06 Score=76.66 Aligned_cols=256 Identities=15% Similarity=0.211 Sum_probs=143.5
Q ss_pred cCcEEEEecC----CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEe-cCCcEEEEecCCCCC
Q 044557 28 AGKFLYTGSS----DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAH-QDHKIRVWKINNQEP 100 (362)
Q Consensus 28 ~~~~l~t~s~----Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~-~dg~i~~w~~~~~~~ 100 (362)
.+++|++... ++.|-.|++......+... ...... -.....+.+. +..|+++. .+|+|.++++.....
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~----~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL----NSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE----EEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEe----eeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 4666766655 5788888876532211110 001111 1223345554 34577775 589999999975421
Q ss_pred CcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEEECCCce--E-
Q 044557 101 DHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIWRTSDFK--C- 176 (362)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~--~- 176 (362)
..... ........+ +.... ......-++.++|+++++++.. ....|.+|++.... .
T Consensus 122 l~~~~-~~~~~~g~g--------~~~~r-----------q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 122 LGEVV-QTVRHEGSG--------PNPDR-----------QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp EEEEE-EEEESEEEE--------SSTTT-----------TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred cceee-eecccCCCC--------Ccccc-----------cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 11000 000000000 00000 0112345788999999888764 34589999987643 2
Q ss_pred -EEeeeccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeeh---hhh-c--cccceeEEEEecCCCEEEE
Q 044557 177 -LESITNAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVD---VLE-R--HNSGINALALSCDGSVLYS 247 (362)
Q Consensus 177 -~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~---~~~-~--h~~~v~~i~~s~~~~~l~s 247 (362)
...+........+.++|+|+++ + ++.-.+++|.++++.......+... .+. . .......|+++|||++|++
T Consensus 182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv 261 (345)
T PF10282_consen 182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV 261 (345)
T ss_dssp EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence 2333334556688999999997 3 4556788999998873222222211 111 1 1125678999999999887
Q ss_pred Ec-CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeE-EEeeCCCcEEEeeCCCCce
Q 044557 248 GA-CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLV-CSGSADKTIRIWRGIDRNY 308 (362)
Q Consensus 248 ~~-~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~-~s~s~D~~i~~W~~~~~~~ 308 (362)
+. ..+.|.+|++....+.+..+..........+.+++++ +++ ++...++.|.+|+....++
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 65 5678999999655556666665554444567888865 454 4555778899998643333
No 236
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=9.6e-10 Score=110.13 Aligned_cols=175 Identities=19% Similarity=0.329 Sum_probs=124.6
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS 159 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 159 (362)
+.++|++||.+++|....+.. +.... ..-...|+.+.|+.+|+.+..
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~-------v~~~r--------------------------t~g~s~vtr~~f~~qGnk~~i 2268 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQ-------VVCFR--------------------------TAGNSRVTRSRFNHQGNKFGI 2268 (2439)
T ss_pred eEEecCCCceEEEEeccCCCe-------EEEee--------------------------ccCcchhhhhhhcccCCceee
Confidence 578999999999997644321 00000 011256777889999999999
Q ss_pred EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEE---eCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 160 VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTG---SADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~---~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
+..||.+.+|... .+.....+ .|.......+|-..+ ++++ +.++.+.+||.--.. ...++. ..|..+++++
T Consensus 2269 ~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~s~-~~tag~s~d~~n~~lwDtl~~~-~~s~v~--~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2269 VDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIGSL-LATAGRSSDNRNVCLWDTLLPP-MNSLVH--TCHDGGATVL 2342 (2439)
T ss_pred eccCCceeecccC-Ccceeccc-cCCccccceeeeehh-hhccccCCCCCcccchhcccCc-ccceee--eecCCCceEE
Confidence 9999999999987 34444443 577777777776533 4443 467899999965332 234444 5799999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~ 305 (362)
++.|.-+.|++||.+|.|++||++..+ +. |.-+. +. ..+++++|+..|.|+||++..
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqrq----l~-----h~~~~--~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQ----LR-----HTFQA--LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHHH----HH-----HHhhh--hh-hhheeeccCcccceEEEEccc
Confidence 999999999999999999999997532 11 22111 22 346899999999999999643
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=8.5e-08 Score=89.16 Aligned_cols=174 Identities=15% Similarity=0.065 Sum_probs=102.1
Q ss_pred ecCceeEEEEecCCCEEEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCC--eEEEEeC
Q 044557 141 HVDAVSALALTKDETLLYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSADK--KIKVWRR 213 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg--~i~iw~~ 213 (362)
+...+.+.+|+||++.|+.++.+ ..|.+||+.+++... +. .......+.+|+|+|+ + ++.+.+| .|.+||+
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~-~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VA-SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ec-cCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 34567788999999998887743 469999998776533 22 2233445788999997 4 3555555 5888998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEc-CCCc--EEEEeccCCCCcEEEEEeecCccceeEEEEEeC--Ce
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRS--IIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DL 288 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~--i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 288 (362)
.++... .+..+.......+|+|||+.|+..+ .++. |.++++..+. ...+. ..+ ......+|++ +.
T Consensus 280 ~~g~~~-----~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt-~~g--~~~~~~~~SpDG~~ 349 (433)
T PRK04922 280 GSRQLT-----RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--AERLT-FQG--NYNARASVSPDGKK 349 (433)
T ss_pred CCCCeE-----ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEee-cCC--CCccCEEECCCCCE
Confidence 766421 1223444456789999999888665 3555 5555654432 22221 222 2233456654 45
Q ss_pred EEEeeCC-C--cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 289 VCSGSAD-K--TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 289 ~~s~s~D-~--~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
++..+.+ + .|.+|+...... ..+. +........|+|++
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~---~~Lt-~~~~~~~p~~spdG 390 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSV---RTLT-PGSLDESPSFAPNG 390 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCe---EECC-CCCCCCCceECCCC
Confidence 5544333 2 588888643322 2332 22233445666554
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.02 E-value=1.2e-08 Score=86.43 Aligned_cols=203 Identities=19% Similarity=0.287 Sum_probs=133.0
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCce-----EEEeeeccC------------cccEEEEEEcCCCc---EEE
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-----CLESITNAH------------DDAINAVALSDDGD---VYT 201 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~~h------------~~~v~~v~~~~~~~---~~s 201 (362)
.+-|.++.|...|.+||+|..+|+|-++.-+... ....++ .| ...|..+.|.+++. ++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 3568899999999999999999999999643321 111221 23 33578899987763 678
Q ss_pred EeCCCeEEEEeCCCCCCcc---------------e--e--e-------------hhhhccccceeEEEEecCCCEEEEEc
Q 044557 202 GSADKKIKVWRRSPGNKKH---------------S--L--V-------------DVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 202 ~~~dg~i~iw~~~~~~~~~---------------~--~--~-------------~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
.+.|++|++|.+....... + + . .....|..-|++|++..|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8899999999875432111 0 0 0 01235777899999999999988875
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCc-----cceeEEEEEeCC---eEEEeeCCCcEEEeeCCCC-----ceee------
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGH-----TKSILCMAVVSD---LVCSGSADKTIRIWRGIDR-----NYTC------ 310 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~-----~~~~------ 310 (362)
|=.|.+|.++-......++- ++-+ +.-|++-.|.|. +++=.|.-|+||+-|+... ..++
T Consensus 184 -dLRINLWnlei~d~sFnIVD-IKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVD-IKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -ceeeeeccccccCCceeEEE-ccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 77899999876555554433 2222 233566667653 6777777899999986421 1010
Q ss_pred ---eeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 311 ---LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 311 ---~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..-+.+--+.|.++.|+++| +||+|=+. -+|++||+.
T Consensus 262 p~~rsffseiIsSISDvKFs~sG---------ryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSG---------RYILSRDY-LTVKLWDLN 301 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCC---------cEEEEecc-ceeEEEecc
Confidence 11133344567888887553 56665432 689999994
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=8.6e-08 Score=88.88 Aligned_cols=179 Identities=14% Similarity=0.084 Sum_probs=104.4
Q ss_pred ecCceeEEEEecCCCEEEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCeEEEEeCCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKKIKVWRRSP 215 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~i~iw~~~~ 215 (362)
+.+.+.+.+|+||++.|+..+.+ ..|.+||+.+++... +. ...+.....+|+|+|. ++ +.+.+|...||.++.
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VA-NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-ee-cCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 45667889999999988877643 359999998876533 22 1234456789999996 54 567788777775432
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEe
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSG 292 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~ 292 (362)
..... ..+..+........|+|||+.|+..+. ++...+|.+.........+. ..+ .......|++ +.++..
T Consensus 272 ~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g--~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 272 DGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTG--SYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCC--CCcCceEECCCCCEEEEE
Confidence 21111 122234444567889999998876553 56667776543222222221 222 2222345554 466655
Q ss_pred eCCC---cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCC
Q 044557 293 SADK---TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDND 331 (362)
Q Consensus 293 s~D~---~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~ 331 (362)
+.++ .|.+|+...... ..+..+ .......|+|++.
T Consensus 346 s~~~g~~~I~v~d~~~g~~---~~lt~~-~~~~~p~~spdg~ 383 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQV---TALTDT-TRDESPSFAPNGR 383 (427)
T ss_pred EccCCcEEEEEEECCCCCe---EEccCC-CCccCceECCCCC
Confidence 5443 588998644332 223222 2234566766654
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.2e-07 Score=87.99 Aligned_cols=113 Identities=20% Similarity=0.198 Sum_probs=70.6
Q ss_pred ceeEEEEecCCCEEE-EEECCCcEEEEEC--CCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-CCCeEEEEeCC--CC
Q 044557 144 AVSALALTKDETLLY-SVSWDRTIKIWRT--SDFKCLESITNAHDDAINAVALSDDGD-VYTGS-ADKKIKVWRRS--PG 216 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~-s~s~d~~i~iwd~--~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~--~~ 216 (362)
.+.+.+|+||++.|+ +.+.++...||.+ ..+. ...+. .+........|+|+|+ ++..+ .+|...+|.+. ++
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 345678999998776 5677887777754 4443 33343 2444456678999997 54333 45666777553 32
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCC---cEEEEeccCCC
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR---SIIVWEKEEDD 263 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---~i~~wd~~~~~ 263 (362)
. ...+. . ........+|+|||++|+..+.++ .|.+||+..++
T Consensus 319 ~-~~~lt--~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 319 A-AQRVT--F--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred c-eEEEe--c--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 2 11121 1 122234578999999998776654 59999987643
No 241
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=5.7e-08 Score=82.86 Aligned_cols=145 Identities=21% Similarity=0.329 Sum_probs=94.4
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCc----e--------EEEeeeccCcccEEEEEEcCCCc-EEEEe-CCC
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDF----K--------CLESITNAHDDAINAVALSDDGD-VYTGS-ADK 206 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~----~--------~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg 206 (362)
+..|.|++|-|.+. .|+.| .-+-|.||..... + +.+.+.....-+|+++.|++||. +++++ .|.
T Consensus 140 QrnvtclawRPlsaselavg-Cr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVG-CRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred hcceeEEEeccCCcceeeee-ecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence 35689999998764 45555 4688999976431 1 11112222235899999999997 66665 567
Q ss_pred eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC
Q 044557 207 KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 207 ~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 286 (362)
.|.|||.+++.+.. +. ....+.++-+.|||||.+|+++.-|+..++|....... ...+.--.++|..-.|++
T Consensus 219 si~iWdpdtg~~~p-L~---~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt----~erw~lgsgrvqtacWsp 290 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIP-LI---PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT----KERWILGSGRVQTACWSP 290 (445)
T ss_pred eEEEEcCCCCCccc-cc---ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce----ecceeccCCceeeeeecC
Confidence 89999999876432 21 23456788999999999999999999999995432111 111111234676666654
Q ss_pred C---eEEEeeCC
Q 044557 287 D---LVCSGSAD 295 (362)
Q Consensus 287 ~---~~~s~s~D 295 (362)
. ++.+.+..
T Consensus 291 cGsfLLf~~sgs 302 (445)
T KOG2139|consen 291 CGSFLLFACSGS 302 (445)
T ss_pred CCCEEEEEEcCC
Confidence 3 44555543
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.97 E-value=2.6e-06 Score=77.03 Aligned_cols=268 Identities=12% Similarity=0.120 Sum_probs=143.1
Q ss_pred EEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcEEEEecCCCCCCcccceeee
Q 044557 32 LYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKIRVWKINNQEPDHQKYTRLA 109 (362)
Q Consensus 32 l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~ 109 (362)
+++-..++.|.+.|..+.+ ...... .+.+.-..+.+.+ .++++++.||.|.++|+.+.+. +.
T Consensus 9 ~V~~~~~~~v~viD~~t~~--~~~~i~-------~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-------v~ 72 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNK--VVARIP-------TGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-------VA 72 (369)
T ss_dssp EEEEGGGTEEEEEETTT-S--EEEEEE--------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-------EE
T ss_pred EEEecCCCEEEEEECCCCe--EEEEEc-------CCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-------EE
Confidence 4566778999999976533 111111 1111112234444 4589999999999999976541 11
Q ss_pred eccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEEECCCceEEEeeecc-----
Q 044557 110 TLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIWRTSDFKCLESITNA----- 183 (362)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~----- 183 (362)
.++ -......+++++||++++++. .++.+.++|.++.+.++.+...
T Consensus 73 ~i~----------------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~ 124 (369)
T PF02239_consen 73 TIK----------------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD 124 (369)
T ss_dssp EEE-----------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT
T ss_pred EEe----------------------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc
Confidence 111 122357899999999988765 7899999999999888766422
Q ss_pred -CcccEEEEEEcCCCc-EEEEe-CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEec
Q 044557 184 -HDDAINAVALSDDGD-VYTGS-ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEK 259 (362)
Q Consensus 184 -h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~ 259 (362)
....+..+..+|... ++..- .-+.|.+-|........ ...+ ..........|+|++++++.+ ..++.|-++|.
T Consensus 125 ~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~~~i-~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 125 GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--VTTI-KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--EEEE-E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--eeee-cccccccccccCcccceeeecccccceeEEEee
Confidence 123466777777776 55444 44788888876543221 1111 122334568899999987664 56778999998
Q ss_pred cCCCCcEEEEEe-ecCccceeEEE-----------EEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 260 EEDDGNILVVGA-LRGHTKSILCM-----------AVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 260 ~~~~~~~~~~~~-~~~h~~~v~~~-----------~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.+... ...+.. ...|..++..+ .-...+.++.-....+.+|+. ..++.++++...... .-+..+
T Consensus 202 ~~~k~-v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~--~~wkvv~~I~~~G~g-lFi~th 277 (369)
T PF02239_consen 202 KTGKL-VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD--YAWKVVKTIPTQGGG-LFIKTH 277 (369)
T ss_dssp TTTEE-EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STT--TBTSEEEEEE-SSSS---EE--
T ss_pred ccceE-EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchh--hcCeEEEEEECCCCc-ceeecC
Confidence 75321 111111 11133222222 111233333333345667773 457778888776666 556666
Q ss_pred ecCCccCCCCCceEEEe---cCCCCcEEEEeccc
Q 044557 328 IDNDRCDSSDTSYLVCS---GSLDCDIKVWQISF 358 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s---~s~D~~i~~W~~~~ 358 (362)
|++. ++.+. +....+|.++|...
T Consensus 278 P~s~--------~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 278 PDSR--------YVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp TT-S--------EEEEE-TT-SSHT-EEEEECCG
T ss_pred CCCc--------cEEeeccCCCCCceEEEEECcC
Confidence 6543 33333 35567899999864
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=5.5e-08 Score=87.64 Aligned_cols=204 Identities=15% Similarity=0.218 Sum_probs=132.2
Q ss_pred eecCceeEEEEecCCCE-EEEEECCCcEEEEECCCceEE----------E--eee---------------ccCc--c---
Q 044557 140 HHVDAVSALALTKDETL-LYSVSWDRTIKIWRTSDFKCL----------E--SIT---------------NAHD--D--- 186 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~----------~--~~~---------------~~h~--~--- 186 (362)
.|...-+.|..+|||+| +|+|..--.|++||+...... . .+. .-|. +
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 45667788999999997 566778889999998753211 0 000 0010 0
Q ss_pred ------cEEEEEEc-CCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 187 ------AINAVALS-DDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 187 ------~v~~v~~~-~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
.-..++++ |.-.++.++....|.-++++.|.... .+.....+++++.+++-..+|++|+.||.|-+||.
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~----P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN----PFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEcccccccc----ccccccccceeeeecCccceEEecccCceEEEecc
Confidence 01233333 23346777777788888888775332 23334578999999999999999999999999998
Q ss_pred cCCCCcEEE--EEeecCccc-----eeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 260 EEDDGNILV--VGALRGHTK-----SILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 260 ~~~~~~~~~--~~~~~~h~~-----~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
+.......+ ......|.+ .|+++.|..+ .++.|..+|.|.|||+..+..- +..-.+-.-+|..+.|.+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-~~kdh~~e~pi~~l~~~~~- 282 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-LVKDHGYELPIKKLDWQDT- 282 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-eecccCCccceeeeccccc-
Confidence 753321111 111223333 3899999764 7999999999999997654432 2233345567888887654
Q ss_pred CccCCCCCceEEEecCCCCcEEEEec
Q 044557 331 DRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 331 ~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+.+..|+|. +-..+||||-
T Consensus 283 ------~~q~~v~S~-Dk~~~kiWd~ 301 (703)
T KOG2321|consen 283 ------DQQNKVVSM-DKRILKIWDE 301 (703)
T ss_pred ------CCCceEEec-chHHhhhccc
Confidence 223456655 3456999985
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.3e-07 Score=87.90 Aligned_cols=110 Identities=19% Similarity=0.145 Sum_probs=70.4
Q ss_pred eEEEEecCCCEEE-EEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-CCCe--EEEEeCCCCCC
Q 044557 146 SALALTKDETLLY-SVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS-ADKK--IKVWRRSPGNK 218 (362)
Q Consensus 146 ~~~~~~~~~~~l~-s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg~--i~iw~~~~~~~ 218 (362)
.+.+|+|||+.|+ +.+.++ .|.+||+.+++..+ +. .+.......+|+|+|+ ++.++ .+|. |.++++.++..
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 4678999998765 555555 59999998876533 33 3434456789999997 54443 4555 55556655432
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCC---cEEEEeccCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDR---SIIVWEKEED 262 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---~i~~wd~~~~ 262 (362)
..+. .+.......+|+|||++|+..+.++ .|.+||+.++
T Consensus 329 -~~lt----~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 329 -ERLT----FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred -EEee----cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 1221 1223344689999999998765443 5889998654
No 245
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.97 E-value=2.2e-09 Score=99.05 Aligned_cols=210 Identities=16% Similarity=0.269 Sum_probs=144.9
Q ss_pred eeEEEEecCC--CEEEEEECCCcEEEEECCC--ceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCC
Q 044557 145 VSALALTKDE--TLLYSVSWDRTIKIWRTSD--FKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 145 v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~ 218 (362)
|-.+.|+|.. .+-++......-.+|++.. .+.++-+..+|+.+|+.+-|+|+.. +++++.|-.|..||+.+...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 3445555432 3434444455666898754 3466777789999999999999875 78899999999999986542
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCeEEEeeCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDLVCSGSAD 295 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D 295 (362)
.+.....-..+-+.+.|+--...+.+.+..+.|++||++.+... +..+++|...|..++|. ...+.+.+.|
T Consensus 150 ---p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~p---l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d 223 (1081)
T KOG0309|consen 150 ---PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTP---LCSLKGHVSSVNSIDFNRFKYSEIMSSSND 223 (1081)
T ss_pred ---ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcc---eEEecccceeeehHHHhhhhhhhhcccCCC
Confidence 12112222345677889876666666777888999999876543 44577898888888875 3478899999
Q ss_pred CcEEEeeCCC-----------------------------------------------------CceeeeeEecCCCCcEE
Q 044557 296 KTIRIWRGID-----------------------------------------------------RNYTCLAVLEGHRGPVK 322 (362)
Q Consensus 296 ~~i~~W~~~~-----------------------------------------------------~~~~~~~~l~~h~~~v~ 322 (362)
++|++|+... ....+++++.||.+.|.
T Consensus 224 ~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~ 303 (1081)
T KOG0309|consen 224 GTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL 303 (1081)
T ss_pred CceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence 9999998431 01244567888988887
Q ss_pred EEEeeecCCc-cCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 323 CLAAAIDNDR-CDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 323 ~~~~~~~~~~-~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
...|-..+.. .+.....+.|++=|.|.++|+|-+....
T Consensus 304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i 342 (1081)
T KOG0309|consen 304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQI 342 (1081)
T ss_pred HHhhhhcccccCCCCccceeEEEeecCCceEeeeccHHH
Confidence 6655432210 1123345679999999999999886543
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.96 E-value=2.5e-07 Score=76.94 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=124.0
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEE--EeeeccCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCL--ESITNAHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
..++.|++.+.-++++-.+|.+.+-+....... +++ +.|+-+.+-..|+... . +++|+.|+.+.-||+...+ .
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--T 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCCCceEEecCCCceEEEEEecCCc--c
Confidence 356778888888999888999985554443332 244 4798899999998544 3 7899999999999998322 1
Q ss_pred eeehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCC
Q 044557 221 SLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADK 296 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~ 296 (362)
-+....+.|..+|.+|.-+| .+.+|++|+.|-.|++||.++-..++.. . .-.+.|..+...+. .+..+..-+
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~---~v~GGVWRi~~~p~~~~~lL~~CMh~ 276 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-A---KVGGGVWRIKHHPEIFHRLLAACMHN 276 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-C---ccccceEEEEecchhhhHHHHHHHhc
Confidence 22233556899999998776 6789999999999999998853332211 1 12356766666553 223333334
Q ss_pred cEEEeeCCCCcee---eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec-CCCCcEE-EEec
Q 044557 297 TIRIWRGIDRNYT---CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG-SLDCDIK-VWQI 356 (362)
Q Consensus 297 ~i~~W~~~~~~~~---~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-s~D~~i~-~W~~ 356 (362)
..++-+......+ .....++|.+-...-.+ +...-+|+|+ ..|+.++ +|-.
T Consensus 277 G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW---------d~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 277 GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW---------DSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred CceEEEecccccchheeeeccccccceeecccc---------ccccceeeeeeccccceeeeeee
Confidence 4555554332222 23344566655544332 1122357775 5788866 8854
No 247
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.93 E-value=2.1e-06 Score=78.56 Aligned_cols=177 Identities=12% Similarity=0.095 Sum_probs=103.4
Q ss_pred CEEEEEECCCcEEEEECCCceEEEeeeccCcc---c------EEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 155 TLLYSVSWDRTIKIWRTSDFKCLESITNAHDD---A------INAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~---~------v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
..++.+..++.+..+|.++++.+-........ . +.+--.-.++.++.++.+|.+..||..+++......
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-- 268 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-- 268 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--
Confidence 36677888899999999888754332111000 0 000001124568888899999999998875332211
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCC
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~ 305 (362)
... ... ...++..++.++.||.+..+|..+++.. .....+.+ .........++.++.++.||.+.+++..
T Consensus 269 ---~~~-~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~~--~~~ssp~i~g~~l~~~~~~G~l~~~d~~- 338 (377)
T TIGR03300 269 ---ASS-YQG--PAVDDNRLYVTDADGVVVALDRRSGSEL-WKNDELKY--RQLTAPAVVGGYLVVGDFEGYLHWLSRE- 338 (377)
T ss_pred ---cCC-ccC--ceEeCCEEEEECCCCeEEEEECCCCcEE-EccccccC--CccccCEEECCEEEEEeCCCEEEEEECC-
Confidence 111 111 1235778888999999999998765421 11111111 1122333456788999999999999853
Q ss_pred CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 306 ~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
+++.+..+..+...+..--...+ +. |+.++.||.|..+
T Consensus 339 -tG~~~~~~~~~~~~~~~sp~~~~---------~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 -DGSFVARLKTDGSGIASPPVVVG---------DG-LLVQTRDGDLYAF 376 (377)
T ss_pred -CCCEEEEEEcCCCccccCCEEEC---------CE-EEEEeCCceEEEe
Confidence 35556666655543332211111 12 6678889998765
No 248
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.93 E-value=2.4e-07 Score=78.22 Aligned_cols=185 Identities=19% Similarity=0.255 Sum_probs=112.9
Q ss_pred eeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce---eEEEecCCcEEEEecCCC
Q 044557 22 VSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK---LFSAHQDHKIRVWKINNQ 98 (362)
Q Consensus 22 V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---l~s~~~dg~i~~w~~~~~ 98 (362)
.-+++..|+|+|+++.- .+-|-|.++.+. .+-+.- -..+.-+.+..+. |..+..|+.|++|++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--~qlf~c--------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--HQLFLC--------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH--HHHHHH--------HHHhhheeeeccceeeeeeeeccceEEEEEeecc
Confidence 44556679999999765 677778766431 111100 0122223333332 556788999999998643
Q ss_pred CCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCE-EEEEECCCcEEEEECCCceEE
Q 044557 99 EPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL-LYSVSWDRTIKIWRTSDFKCL 177 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~ 177 (362)
+-. +.+..-.+.+.++.|+|||+. |.+...|-+|.+|.+.+.+..
T Consensus 82 ew~----------------------------------ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 82 EWY----------------------------------CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred eeE----------------------------------EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 310 111123456788999999965 556778899999999887764
Q ss_pred EeeeccCcccEEEEEEcCCCcEEEEeC-------------------------------------CCeEEEEeCCCCCCcc
Q 044557 178 ESITNAHDDAINAVALSDDGDVYTGSA-------------------------------------DKKIKVWRRSPGNKKH 220 (362)
Q Consensus 178 ~~~~~~h~~~v~~v~~~~~~~~~s~~~-------------------------------------dg~i~iw~~~~~~~~~ 220 (362)
..- .....+..++|+|+|++.+-.+ +..+.+||.--..
T Consensus 128 ~~~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley--- 202 (447)
T KOG4497|consen 128 LLP--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY--- 202 (447)
T ss_pred Eec--ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh---
Confidence 321 1233457888999887543211 1123334321000
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
+. .......++..++|+|-+++|+.|+.|+.+|+-+
T Consensus 203 kv--~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 203 KV--YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ee--eeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 00 0111236788999999999999999999998754
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.92 E-value=1.5e-07 Score=78.27 Aligned_cols=182 Identities=16% Similarity=0.197 Sum_probs=118.3
Q ss_pred CcEEEEECCCceEEE--eeeccCcccEEEEEEcC---CCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhcccc---ce
Q 044557 164 RTIKIWRTSDFKCLE--SITNAHDDAINAVALSD---DGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS---GI 233 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~--~~~~~h~~~v~~v~~~~---~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~---~v 233 (362)
|.+.+|++.+.+... .++...+..+..+.|.- +|. ++-+-.+|.|.+|.......... ...+..-.. .-
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~-L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH-LRGLSSKKISVVEA 124 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee-ecccchhhhhheee
Confidence 567777776654332 33333445566666652 333 45567788898886543321111 111111111 12
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCeEEEeeCCCcEEEeeCCCCceee
Q 044557 234 NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDLVCSGSADKTIRIWRGIDRNYTC 310 (362)
Q Consensus 234 ~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~s~s~D~~i~~W~~~~~~~~~ 310 (362)
-++.|++-+..++++-.+|.+.+-+.. ...+..+..++.|.-.+....|+ ++++.+||.|+.+..||..-++ +.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t--~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYET--EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecc--eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce
Confidence 467788989999999999999844332 22333344788898887777775 6799999999999999975333 23
Q ss_pred e-eEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 311 L-AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 311 ~-~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ ..-+-|...|.++.-+| +.+.+|++||.|-.|++||..
T Consensus 202 i~~n~kvH~~GV~SI~ss~--------~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSP--------PKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred eeecceeeecceEEEecCC--------CCCceEEEeccccceeeeehh
Confidence 3 33556888898887654 445789999999999999985
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.89 E-value=2.2e-09 Score=90.23 Aligned_cols=110 Identities=17% Similarity=0.248 Sum_probs=79.8
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
-++|+|+|+++|+++.- ++-|=|.++.+..+.+.- -+.|.-+.|..+.. +.....|+.|.+|++...+ ..-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe----w~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE----WYC 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeecce----eEE
Confidence 46799999999999865 777878877665443321 23456677777764 4456788999999987543 222
Q ss_pred hhhccccceeEEEEecCCCE-EEEEcCCCcEEEEeccCCC
Q 044557 225 VLERHNSGINALALSCDGSV-LYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~~~-l~s~~~d~~i~~wd~~~~~ 263 (362)
.+...+.++.+++|||||++ |.+...|-.|.+|++.+..
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~ 125 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK 125 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence 34556788999999999965 5567789999999997643
No 251
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=1.1e-06 Score=81.98 Aligned_cols=197 Identities=15% Similarity=0.062 Sum_probs=114.0
Q ss_pred eeeecccCccceeeeEec--CcEEEEecC---CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--ee-E
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSS---DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KL-F 82 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~---Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~ 82 (362)
..+.|..|...+.+..|+ |+.|+..+. +..|.+||+.+..... +....+.+....++++ .| +
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~----------l~~~~g~~~~~~~SPDG~~la~ 262 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL----------VGNFPGMTFAPRFSPDGRKVVM 262 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE----------eecCCCcccCcEECCCCCEEEE
Confidence 445567788889999884 777776653 4689999987543211 1112233444455544 34 5
Q ss_pred EEecCCc--EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 83 SAHQDHK--IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 83 s~~~dg~--i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+.+.++. |.+|++..+.. ..+ ..+........|+||++.|+..
T Consensus 263 ~~~~~g~~~Iy~~d~~~~~~-----~~L------------------------------t~~~~~~~~~~~spDG~~i~f~ 307 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSGTT-----TRL------------------------------TDSPAIDTSPSYSPDGSQIVFE 307 (435)
T ss_pred EEecCCCceEEEEECCCCce-----EEc------------------------------cCCCCccCceeEcCCCCEEEEE
Confidence 6666666 55556543321 000 0112233457899999988876
Q ss_pred EC-CC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC---CeEEEEeCCCCCCcceeehhhhccccce
Q 044557 161 SW-DR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD---KKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 161 s~-d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
+. ++ .|.+||+..++.. .+.. +...+....|+|+|+ ++....+ ..|.+||+..+. . ..+. ....+
T Consensus 308 s~~~g~~~Iy~~d~~g~~~~-~lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~-~~lt----~~~~~ 379 (435)
T PRK05137 308 SDRSGSPQLYVMNADGSNPR-RISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-E-RILT----SGFLV 379 (435)
T ss_pred ECCCCCCeEEEEECCCCCeE-Eeec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-e-Eecc----CCCCC
Confidence 63 33 5778887765543 2332 234456678999997 4443332 367888875443 2 1111 12246
Q ss_pred eEEEEecCCCEEEEEcCCC------cEEEEecc
Q 044557 234 NALALSCDGSVLYSGACDR------SIIVWEKE 260 (362)
Q Consensus 234 ~~i~~s~~~~~l~s~~~d~------~i~~wd~~ 260 (362)
....|+|||+.|+..+.++ .+.++|+.
T Consensus 380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 6789999999887655432 45556654
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.86 E-value=6.4e-07 Score=83.12 Aligned_cols=153 Identities=16% Similarity=0.062 Sum_probs=95.0
Q ss_pred ecCceeEEEEecCCCEEEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCC--eEEEEeC
Q 044557 141 HVDAVSALALTKDETLLYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADK--KIKVWRR 213 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg--~i~iw~~ 213 (362)
+...+...+|+||++.|+.++.+ ..|.+||+.+++... +. .+...+.+++|+|+|+ ++ +.+.++ .|.+|++
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 34457788899999998887654 479999998875433 22 2445566789999996 54 444444 5888888
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CC--cEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--Ce
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DR--SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DL 288 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 288 (362)
.++... . +..+........|+|||+.|+..+. ++ .|.++++...+ ... +..+........+++ +.
T Consensus 266 ~~~~~~-~----l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~---l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 266 DGKQLT-R----LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRR---LTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred CCCCEE-E----CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEE---eecCCCCccCeEECCCCCE
Confidence 765321 1 1223344556789999998876554 33 46677765432 222 222334445556654 46
Q ss_pred EEEeeCCC---cEEEeeCCC
Q 044557 289 VCSGSADK---TIRIWRGID 305 (362)
Q Consensus 289 ~~s~s~D~---~i~~W~~~~ 305 (362)
++.++.++ .|.+|+...
T Consensus 336 i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred EEEEEccCCceEEEEEeCCC
Confidence 66666654 577777543
No 253
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.83 E-value=1.9e-05 Score=71.41 Aligned_cols=296 Identities=16% Similarity=0.120 Sum_probs=146.4
Q ss_pred cceeeecccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~ 84 (362)
++.++++......-..+.+ +|+++++++.||.|.++|+.+.. ...+ +..+. ....+.+++ .+++++
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~-------i~~G~-~~~~i~~s~DG~~~~v~ 95 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVAT-------IKVGG-NPRGIAVSPDGKYVYVA 95 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEE-------EE-SS-EEEEEEE--TTTEEEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEE-------EecCC-CcceEEEcCCCCEEEEE
Confidence 3566777655444333445 47899989999999999987644 1111 11222 234455554 456655
Q ss_pred -ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 85 -HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 85 -~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
...+.+.++|.++.++. ..++..... . .....++..+..+|....++..-.|
T Consensus 96 n~~~~~v~v~D~~tle~v-------~~I~~~~~~-------~-------------~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 96 NYEPGTVSVIDAETLEPV-------KTIPTGGMP-------V-------------DGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEETTEEEEEETTT--EE-------EEEE--EE--------T-------------TTS---EEEEEE-SSSSEEEEEETT
T ss_pred ecCCCceeEeccccccce-------eeccccccc-------c-------------cccCCCceeEEecCCCCEEEEEEcc
Confidence 46899999998765421 111110000 0 0012356677778888866665555
Q ss_pred -CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 164 -RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 164 -~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
+.|-+-|....+.+..-............|.|+++ + ++...++.|-++|..++.....+......|..++..+ .+|
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php 227 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHP 227 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EET
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCC
Confidence 77777787765433221112334567789999997 3 3456677999999877543222211122344444333 233
Q ss_pred CC----------CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEe----eCCCcEEEeeCC
Q 044557 241 DG----------SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSG----SADKTIRIWRGI 304 (362)
Q Consensus 241 ~~----------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~----s~D~~i~~W~~~ 304 (362)
.. ...++.-....+.+||... ...+..++..... ..+..+++ ++... ...++|.++|..
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~----wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYA----WKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTB----TSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred CcceEEeeccccceecccccCCccccchhhc----CeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 22 2222222222333455443 2234445544444 45555544 55444 556899999953
Q ss_pred CCceeeeeEecCCC-CcEEEEEeeecCCccCCCCCceEEEec-CCCCcEEEEecc
Q 044557 305 DRNYTCLAVLEGHR-GPVKCLAAAIDNDRCDSSDTSYLVCSG-SLDCDIKVWQIS 357 (362)
Q Consensus 305 ~~~~~~~~~l~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~-s~D~~i~~W~~~ 357 (362)
+.+.+.++.... ..+..+.|+++++. ..+|. ..++.|.++|..
T Consensus 303 --tl~~~~~i~~~~~~~~~h~ef~~dG~~--------v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 303 --TLKVVKTITPGPGKRVVHMEFNPDGKE--------VWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp --GTEEEE-HHHHHT--EEEEEE-TTSSE--------EEEEEE--TTEEEEEETT
T ss_pred --CcceeEEEeccCCCcEeccEECCCCCE--------EEEEEecCCCEEEEEECC
Confidence 345555654222 24888899877653 33444 334479999875
No 254
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=1.6e-07 Score=76.78 Aligned_cols=132 Identities=22% Similarity=0.322 Sum_probs=89.3
Q ss_pred ceeEEEEecCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.|.+++-+|.. ..+++|++||.+.+||.+.......+...|+.+++.+-|+|.. +|++++.||.+..||..+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~---- 256 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT---- 256 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc----
Confidence 47778888865 4677788999999999998866666677899999999999865 4999999999999986531
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCc-EEEEEeecCccceeEEEEEeCCeEEEeeCCCcEE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGN-ILVVGALRGHTKSILCMAVVSDLVCSGSADKTIR 299 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~ 299 (362)
. ++++++. ..+..|=--..-.. ..+...+......|.++..-+..+++|+.-+.|+
T Consensus 257 -~-------------l~i~~~~---------s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIy 313 (319)
T KOG4714|consen 257 -F-------------LSISNQA---------SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIY 313 (319)
T ss_pred -e-------------EEecCcc---------ccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEE
Confidence 1 1122221 11222311000011 1122223334456777777788999999989998
Q ss_pred Eee
Q 044557 300 IWR 302 (362)
Q Consensus 300 ~W~ 302 (362)
+.+
T Consensus 314 l~~ 316 (319)
T KOG4714|consen 314 LTR 316 (319)
T ss_pred Eec
Confidence 875
No 255
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=2.1e-08 Score=89.92 Aligned_cols=284 Identities=15% Similarity=0.174 Sum_probs=154.7
Q ss_pred ccceeeecccCccceeeeEe-c-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 8 DHHCLTTLKGHNSYVSSLAL-A-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~-~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
++-.+..+.||+..|+++.. + .+.++++|.|.|||+|.+....-+.... ..+-....|+.++..+-+..+.-..++
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts--aCQfTY~aHkk~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS--ACQFTYQAHKKPIHDIGFLADLRSIAS 801 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc--eeeeEhhhccCcccceeeeeccceeee
Confidence 44566779999999999976 3 5689999999999999986532111110 001111235667777877777666777
Q ss_pred cCCcEEEEecCCCCCC--------cccceeeeeccCCCchhhhhc-cccccceeeee---------eeeEEeeecCceeE
Q 044557 86 QDHKIRVWKINNQEPD--------HQKYTRLATLPTLGDRAIKLL-MPKNHVQIRRH---------KTCTWVHHVDAVSA 147 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~h~~~v~~ 147 (362)
-||-|.+||.-.+.+. +.....+..++.......... .....++..+. +.+...+-...+++
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 8999999996433221 111122222222111111111 11112222222 22211223456899
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEE-EeCCCCCCcceeehhh
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKV-WRRSPGNKKHSLVDVL 226 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~i-w~~~~~~~~~~~~~~~ 226 (362)
++..+.|+.++.+=.+|.|.+-|.++++.+..+. ..+.....++-..+..++....|.++.+ |-..++....+.
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~---- 956 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQD---- 956 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeecc----
Confidence 9999999999999999999999999999888775 3333333333333334777778888888 865554321111
Q ss_pred hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec--CccceeEEEEEeC--CeEEEeeCCCcEEE
Q 044557 227 ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR--GHTKSILCMAVVS--DLVCSGSADKTIRI 300 (362)
Q Consensus 227 ~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~h~~~v~~~~~~~--~~~~s~s~D~~i~~ 300 (362)
+..+.+..-+ -.-|.-|+++-..+.+.+|--.........+..++ .-.+..++++.-+ .-+..|.+-|.|.+
T Consensus 957 kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 957 KPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 0011111000 11245566666666677774211100000011111 1123345555533 24566777777765
No 256
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=1.1e-07 Score=82.21 Aligned_cols=149 Identities=16% Similarity=0.210 Sum_probs=97.7
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCce----EEEeeeccCcccEEEEEEcCCC---cEE-EEeCCCeEEEEeCCCCC
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFK----CLESITNAHDDAINAVALSDDG---DVY-TGSADKKIKVWRRSPGN 217 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~h~~~v~~v~~~~~~---~~~-s~~~dg~i~iw~~~~~~ 217 (362)
..+..++.+++||.+..+....++++.... ++.... -...-+++.|..+. .++ ..+....+.+|....+.
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 344567888889888877776666654322 222111 11112333333222 222 34555667777655432
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCC
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADK 296 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~ 296 (362)
.. .+-+|-.-+..++|+||+++|+++..|..||+-..... ..+..-.-||...|..++..++ .|+|+|.|+
T Consensus 144 ~~-----~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~---f~IesfclGH~eFVS~isl~~~~~LlS~sGD~ 215 (390)
T KOG3914|consen 144 CE-----PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---FVIESFCLGHKEFVSTISLTDNYLLLSGSGDK 215 (390)
T ss_pred cc-----hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc---cchhhhccccHhheeeeeeccCceeeecCCCC
Confidence 21 23478888999999999999999999999998765421 1222334589999999998766 679999999
Q ss_pred cEEEeeCC
Q 044557 297 TIRIWRGI 304 (362)
Q Consensus 297 ~i~~W~~~ 304 (362)
++++|++.
T Consensus 216 tlr~Wd~~ 223 (390)
T KOG3914|consen 216 TLRLWDIT 223 (390)
T ss_pred cEEEEecc
Confidence 99999964
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.79 E-value=3.1e-06 Score=78.54 Aligned_cols=111 Identities=19% Similarity=0.121 Sum_probs=72.4
Q ss_pred ceeEEEEecCCCEEE-EEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-CCC--eEEEEeCCCC
Q 044557 144 AVSALALTKDETLLY-SVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS-ADK--KIKVWRRSPG 216 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~-s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg--~i~iw~~~~~ 216 (362)
.+.+++|+||++.|+ +.+.++ .|.+||+.+++... +. .+........|+|+|+ ++..+ .++ .|.++++.++
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 345678999998765 444444 58888988765433 32 2333445678999987 54443 333 5777777654
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCC---cEEEEeccC
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR---SIIVWEKEE 261 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---~i~~wd~~~ 261 (362)
.. ..+ ..+...+..+.|+|+|++|+.++.++ .|.+||+.+
T Consensus 313 ~~-~~l----~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 313 EV-RRL----TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CE-EEe----ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 32 111 22344567789999999999888776 788888865
No 258
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.78 E-value=1.1e-07 Score=82.13 Aligned_cols=149 Identities=21% Similarity=0.310 Sum_probs=90.3
Q ss_pred EEEcCCCcEE-EEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc---EEEEeccCCCCcE
Q 044557 191 VALSDDGDVY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS---IIVWEKEEDDGNI 266 (362)
Q Consensus 191 v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~---i~~wd~~~~~~~~ 266 (362)
+..+|+++++ .+..++...+++.....+..++..... -...-+++.|..+......+..-|. +.+|...+..
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~--- 143 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR--- 143 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC---
Confidence 4455666643 344444444555543322122222111 1122344555555555554444444 4444443322
Q ss_pred EEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeE-ecCCCCcEEEEEeeecCCccCCCCCceEEE
Q 044557 267 LVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAV-LEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343 (362)
Q Consensus 267 ~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 343 (362)
...+-||..-++.++++++ +++++..|..||+=.... ...+.. ..||+.-|..++..++ +.|+
T Consensus 144 --~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa--~f~IesfclGH~eFVS~isl~~~----------~~Ll 209 (390)
T KOG3914|consen 144 --CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA--TFVIESFCLGHKEFVSTISLTDN----------YLLL 209 (390)
T ss_pred --cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc--ccchhhhccccHhheeeeeeccC----------ceee
Confidence 2235689999999999865 999999999999876422 223443 4599999999988643 4689
Q ss_pred ecCCCCcEEEEecc
Q 044557 344 SGSLDCDIKVWQIS 357 (362)
Q Consensus 344 s~s~D~~i~~W~~~ 357 (362)
|||.|+++|+||+.
T Consensus 210 S~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 210 SGSGDKTLRLWDIT 223 (390)
T ss_pred ecCCCCcEEEEecc
Confidence 99999999999984
No 259
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=7.9e-07 Score=74.62 Aligned_cols=280 Identities=19% Similarity=0.326 Sum_probs=152.7
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCC---cccceeeeccc---eeE-Ee-ecceeEEEEEcCc----eeEE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFS---SELDQEFLSNN---NIV-AV-GKGAVKSLVVLAD----KLFS 83 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~---~~~~~~~~~~~---~~~-~~-~~~~v~~i~~~~~----~l~s 83 (362)
-.+.|++|.|. |.|++||..-|.|-++.-+... .....++.... ..+ +. -...+..|.+..+ .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35678999994 8899999999999999865422 11111121110 000 00 0223444544322 3666
Q ss_pred EecCCcEEEEecCCCCCCcccceee---eeccCCCch--hhhhcccc--ccceeeeeeeeE--EeeecCceeEEEEecCC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRL---ATLPTLGDR--AIKLLMPK--NHVQIRRHKTCT--WVHHVDAVSALALTKDE 154 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~ 154 (362)
.+.|.+|++|.+.......-....+ ...|..+.. ...+..|. ....+...+.+. ...|..-+.+++++.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 6779999999985432110000000 000000000 00001110 001111111111 13477789999999998
Q ss_pred CEEEEEECCCcEEEEECCCce-EEEeee-ccC-----cccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCC---Cccee
Q 044557 155 TLLYSVSWDRTIKIWRTSDFK-CLESIT-NAH-----DDAINAVALSDDGD--VYTGSADKKIKVWRRSPGN---KKHSL 222 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~-~~~~~~-~~h-----~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~---~~~~~ 222 (362)
..++++ .|-+|.+|+++-.. +...+. ++| +..|++..|+|..- +.-.+..|+|++-|+.... ...++
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888765 58999999986432 211111 233 33578888998753 4456788999999986321 00111
Q ss_pred e---------hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCc------------ccee--
Q 044557 223 V---------DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGH------------TKSI-- 279 (362)
Q Consensus 223 ~---------~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h------------~~~v-- 279 (362)
. ..+.+-...|..+.|+++|+++++-+. .+|++||..........+ .-| ...|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi---~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI---PMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee---chHHHHHHHHHhhhhccceee
Confidence 1 112223456788999999999988764 589999988655443322 222 2223
Q ss_pred -EEEEEeCC--eEEEeeCCCcEEEee
Q 044557 280 -LCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 280 -~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
..+.++++ .+.+||.....-++-
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred eEEEEecCCcccccccccccceeeec
Confidence 24556654 677888777777764
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=0.00012 Score=63.04 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=109.6
Q ss_pred eeEEEEecCCCEEEEEEC-CCcEEEEECCCceEEEe--eeccCcccEEEEEEcCCCcEE--EEeCCCeEEEEeCCCCCCc
Q 044557 145 VSALALTKDETLLYSVSW-DRTIKIWRTSDFKCLES--ITNAHDDAINAVALSDDGDVY--TGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~~--s~~~dg~i~iw~~~~~~~~ 219 (362)
+-+..+.|++++|+++.- --+|.+|++.+++.... .........+.|.|+|+++++ ..=-+++|.+|........
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 557789999999988753 24789999987754221 111334457889999999843 4556899999988764221
Q ss_pred ceee---hhhh---ccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEE
Q 044557 220 HSLV---DVLE---RHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVC 290 (362)
Q Consensus 220 ~~~~---~~~~---~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~ 290 (362)
...+ ..+. .-.....+|.++|||++|+++.. ...|-+|.+....+.+..+.....+....+.+.+. +++|+
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 1111 1111 12345678999999999998853 44788898877666666666666666656777665 45655
Q ss_pred Eee-CCCcEEEeeCCCCcee
Q 044557 291 SGS-ADKTIRIWRGIDRNYT 309 (362)
Q Consensus 291 s~s-~D~~i~~W~~~~~~~~ 309 (362)
.+. .+.+|.+|.....++.
T Consensus 307 aa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 307 AANQKSDNITVFERDKETGR 326 (346)
T ss_pred EEccCCCcEEEEEEcCCCce
Confidence 555 4567999976554443
No 261
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.72 E-value=4.4e-08 Score=90.69 Aligned_cols=203 Identities=17% Similarity=0.201 Sum_probs=134.3
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCC-ceEEEeeeccCcc--cEEEEEEcCCCc---EEEEeCCCeEEEEeCCC
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSD-FKCLESITNAHDD--AINAVALSDDGD---VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~h~~--~v~~v~~~~~~~---~~s~~~dg~i~iw~~~~ 215 (362)
.+.+..+.++|-|+-+|.++.-|.+. -|+.. +...+-+. |.. .|-.+.|+|... -+......+-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i-~dld~p~~ppr~l~--h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYI-IDLDDPFTPPRWLH--HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEE-EeccCCCCCceeee--ccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 35677888999999888888766554 45543 23322221 222 245566776542 23334444556788764
Q ss_pred CCCcceeehhhhccccceeEEEEecCC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEe
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSG 292 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~ 292 (362)
... ..+.-.+.+|..+|+.+-|.|+. ..+++++.|-.+..||+++..........+. . .-..++|+ ...+...
T Consensus 101 ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--s-~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 101 SSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--S-AASQVKWNYKDPNVLAS 176 (1081)
T ss_pred CCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc--c-cCceeeecccCcchhhh
Confidence 432 23444567899999999999864 5889999999999999998765544333332 2 22344443 2244455
Q ss_pred eCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 293 SADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 293 s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
+-.+.|++|+.. ....++..+++|...|+.++|..... -.+.+.+.|++|+.||.+..+
T Consensus 177 shg~~i~vwd~r-~gs~pl~s~K~~vs~vn~~~fnr~~~--------s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 177 SHGNDIFVWDLR-KGSTPLCSLKGHVSSVNSIDFNRFKY--------SEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred ccCCceEEEecc-CCCcceEEecccceeeehHHHhhhhh--------hhhcccCCCCceeeecccccc
Confidence 666789999953 45567888999999999998853211 136789999999999997665
No 262
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.71 E-value=3.5e-08 Score=58.00 Aligned_cols=36 Identities=47% Similarity=0.980 Sum_probs=33.7
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEee
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWD 45 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd 45 (362)
+++++|++|.+.|.+|++. +.+|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 6889999999999999995 68999999999999997
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=6.4e-06 Score=76.75 Aligned_cols=116 Identities=18% Similarity=0.112 Sum_probs=75.4
Q ss_pred eecCceeEEEEecCCCEEEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCC--eEEEEe
Q 044557 140 HHVDAVSALALTKDETLLYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADK--KIKVWR 212 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg--~i~iw~ 212 (362)
.+...+....|+|||+.|+..+.+ ..|.+|++.+++... +. ...+.+...+|+|+|+ ++ +...+| .|.+||
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-IT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-cc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 345667888999999988776644 368899998876433 22 1223345688999997 44 455555 577888
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CC--cEEEEeccCC
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DR--SIIVWEKEED 262 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~--~i~~wd~~~~ 262 (362)
+.++... . +..+........|+|||+.|+..+. ++ .|.++++..+
T Consensus 274 ~~~~~~~-~----lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 274 LASRQLS-R----VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCCCCeE-E----cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 8765421 1 2234444567789999998775553 44 4666676543
No 264
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.70 E-value=3.2e-06 Score=69.66 Aligned_cols=170 Identities=14% Similarity=0.023 Sum_probs=111.1
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEE-EcCC-CcEEEEeCCCeEEEEeCCCCCCcceeehhhhccc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVA-LSDD-GDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~-~~~~-~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
...+||.|+.-|.+.+|...+.+..-.+...|...|+-+. .+.. -.+..++.|.++++.+++-+..... .|.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~------~h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA------VHN 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce------eec
Confidence 3457999999999999998876543333333333332222 1111 2377889999999999876543322 233
Q ss_pred c--ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCC
Q 044557 231 S--GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDR 306 (362)
Q Consensus 231 ~--~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~ 306 (362)
. .++++++++|++++++.+....|-.|.+......... .....-.+.-.+..|+. ..+|+++.||++-|||+..-
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 3 3788999999999999999999999998754332221 12222233345666653 48999999999999996421
Q ss_pred ceeee----eEecCCCCcEEEEEeeecC
Q 044557 307 NYTCL----AVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 307 ~~~~~----~~l~~h~~~v~~~~~~~~~ 330 (362)
..+. .+--.|.+++..+.|++.+
T Consensus 236 -~tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 236 -ATPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred -ccchhhhcccCCCCCCceEEEEecCCC
Confidence 1111 1223489999999998753
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.70 E-value=7.4e-06 Score=67.56 Aligned_cols=190 Identities=16% Similarity=0.123 Sum_probs=122.3
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeeccee---EEEEEcCceeEEEecCCcEEEEecCCCCCCcccce
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAV---KSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYT 106 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v---~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 106 (362)
.+||.||.-|...+|...+.+..+.. ...+...| .......-.+..++-|.++++.++.......
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~--------cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---- 152 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQ--------CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---- 152 (344)
T ss_pred cEEEeccccceeeeecccCcccceee--------ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc----
Confidence 48999999999999998754322110 00111111 1222233357888999999999876432110
Q ss_pred eeeeccCCCchhhhhccccccceeeeeeeeEEeeecC--ceeEEEEecCCCEEEEEECCCcEEEEECCCce--EEEeeec
Q 044557 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD--AVSALALTKDETLLYSVSWDRTIKIWRTSDFK--CLESITN 182 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~ 182 (362)
.-|.. .+.++++++|++++++.+.-..|..|.+.... .++....
T Consensus 153 --------------------------------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a 200 (344)
T KOG4532|consen 153 --------------------------------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA 200 (344)
T ss_pred --------------------------------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec
Confidence 11222 26788999999999999999999999886532 2332222
Q ss_pred cCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcce-eehhhhccccceeEEEEecCCC--EEEEEcCCCcEEEEe
Q 044557 183 AHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHS-LVDVLERHNSGINALALSCDGS--VLYSGACDRSIIVWE 258 (362)
Q Consensus 183 ~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~-~~~~~~~h~~~v~~i~~s~~~~--~l~s~~~d~~i~~wd 258 (362)
.-++.=.+..|+.... ++++..||++.|||+........ .......|++.+..+.|++-|. +|+..-.=+.+.+-|
T Consensus 201 ~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 201 PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 3334446677886654 89999999999999986542211 2223345889999999998553 444444456788888
Q ss_pred ccCCC
Q 044557 259 KEEDD 263 (362)
Q Consensus 259 ~~~~~ 263 (362)
+++..
T Consensus 281 ~R~~~ 285 (344)
T KOG4532|consen 281 TRNYV 285 (344)
T ss_pred cccCc
Confidence 87654
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=4.3e-06 Score=77.99 Aligned_cols=149 Identities=17% Similarity=0.113 Sum_probs=85.3
Q ss_pred cCceeEEEEecCCCEEEEEECC-C--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCe--EEEEeCC
Q 044557 142 VDAVSALALTKDETLLYSVSWD-R--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKK--IKVWRRS 214 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~--i~iw~~~ 214 (362)
...+.+..|+|||+.|+..+.+ + .|.+||+.+++... +. .........+|+|+|+ ++ +.+.+|. |.++|+.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 4466788999999988776543 3 58888988765422 21 1122334678999997 54 4566675 6667776
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CCc--EEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeE
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DRS--IIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLV 289 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~--i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~ 289 (362)
++... .+..+.......+|+|||+.|+..+. ++. |.++|+.+++ ...+. ..++. ....++++ +.+
T Consensus 295 tg~~~-----~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt-~~g~~--~~~~~~SpDG~~l 364 (448)
T PRK04792 295 TKALT-----RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLT-FEGEQ--NLGGSITPDGRSM 364 (448)
T ss_pred CCCeE-----ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEe-cCCCC--CcCeeECCCCCEE
Confidence 65321 12234445667899999998875543 444 5555665432 22221 22222 22334554 444
Q ss_pred E-EeeCCCcEEEee
Q 044557 290 C-SGSADKTIRIWR 302 (362)
Q Consensus 290 ~-s~s~D~~i~~W~ 302 (362)
+ +...++..++|.
T Consensus 365 ~~~~~~~g~~~I~~ 378 (448)
T PRK04792 365 IMVNRTNGKFNIAR 378 (448)
T ss_pred EEEEecCCceEEEE
Confidence 4 344455566653
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=5.6e-08 Score=82.42 Aligned_cols=143 Identities=16% Similarity=0.294 Sum_probs=104.6
Q ss_pred EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC-CcEEEEEeecCccc
Q 044557 199 VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD-GNILVVGALRGHTK 277 (362)
Q Consensus 199 ~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~h~~ 277 (362)
-++.+.+-.|-+-+++++... .+ ...+.|.++.|...+..++.|...|.|..+|++... ++.... ..-.|..
T Consensus 227 hfs~G~sqqv~L~nvetg~~q-sf-----~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~rlyh~S 299 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQ-SF-----QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QRLYHDS 299 (425)
T ss_pred eecccccceeEEEEeeccccc-cc-----ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EEEEcCc
Confidence 356777888889999887432 22 146678889999889999999999999999998641 111111 1224777
Q ss_pred eeEEEE---EeCCeEEEeeCCCcEEEeeCCCCceee---eeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcE
Q 044557 278 SILCMA---VVSDLVCSGSADKTIRIWRGIDRNYTC---LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 278 ~v~~~~---~~~~~~~s~s~D~~i~~W~~~~~~~~~---~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i 351 (362)
.|+|+. ++..++.+.+.+|.|++||.. ..++ +.+++||.+.-.-+.+.-+. ....|+++++|+-.
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R--~~K~~~~V~qYeGHvN~~a~l~~~v~~-------eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLR--ATKCKKSVMQYEGHVNLSAYLPAHVKE-------EEGSIFSVGDDCYT 370 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeeh--hhhcccceeeeeccccccccccccccc-------ccceEEEccCeeEE
Confidence 787764 566789999999999999953 3444 88899998766666555432 22468889999999
Q ss_pred EEEecc
Q 044557 352 KVWQIS 357 (362)
Q Consensus 352 ~~W~~~ 357 (362)
|||.+.
T Consensus 371 RiWsl~ 376 (425)
T KOG2695|consen 371 RIWSLD 376 (425)
T ss_pred EEEecc
Confidence 999985
No 268
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.69 E-value=5.3e-08 Score=57.24 Aligned_cols=38 Identities=32% Similarity=0.678 Sum_probs=34.1
Q ss_pred eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 309 TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 309 ~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+++.++.+|.+.|++++|+|++ .+|+|||.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~---------~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG---------NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS---------SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc---------ccceeeCCCCEEEEEC
Confidence 5788999999999999998763 4699999999999997
No 269
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.68 E-value=2.8e-07 Score=75.37 Aligned_cols=157 Identities=13% Similarity=0.179 Sum_probs=97.4
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCce-EEEeeeccCcccEEEEEEcCCCcEEEEeCCCe------EEEEe
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-CLESITNAHDDAINAVALSDDGDVYTGSADKK------IKVWR 212 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~------i~iw~ 212 (362)
.|++.-.+-+.+-.++.++++..||.+.+.+.+... ....+...|.+. -+.++...+.++..+.-|+ .+.|+
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeec
Confidence 344433333444456779999999999999876521 111111112111 1223333455555444444 44555
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe---CCe
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV---SDL 288 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~ 288 (362)
++... .+..... ....|++++-+|. .+.+++|+.||.+.+||.+... .....++.|...+..+-|. |+.
T Consensus 166 ~~p~~---t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 166 LDPIK---TLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ccccc---ccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCCchh
Confidence 54322 2222111 1234889998885 4567788899999999998642 2455678899999999986 458
Q ss_pred EEEeeCCCcEEEeeCC
Q 044557 289 VCSGSADKTIRIWRGI 304 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~ 304 (362)
|.++|+||.+-.||..
T Consensus 239 Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAS 254 (319)
T ss_pred eeEecCCCcEEEEcCC
Confidence 9999999999999864
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.67 E-value=3.9e-05 Score=70.19 Aligned_cols=264 Identities=13% Similarity=0.087 Sum_probs=144.4
Q ss_pred EecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccc
Q 044557 26 ALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 26 ~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
...++.++.++.++.+.-+|..+....+...... .....+...++.++.++.++.+..+|.++++...+.
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~---------~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~- 131 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDE---------RLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRA- 131 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCC---------CcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeee-
Confidence 3457788889999999999977654322211111 111223345677889999999999998765521100
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCc
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~ 185 (362)
.. .+.+.+.... .+..++.++.++.|..||.++++.+-..... .
T Consensus 132 ----~~------------------------------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~ 175 (377)
T TIGR03300 132 ----KL------------------------------SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV-T 175 (377)
T ss_pred ----cc------------------------------CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC-C
Confidence 00 0001100001 2345666778999999999988866544321 1
Q ss_pred ccE-----EEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehh-hhccc--c---ce-eEEEEecCCCEEEEEcCCCc
Q 044557 186 DAI-----NAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV-LERHN--S---GI-NALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 186 ~~v-----~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~h~--~---~v-~~i~~s~~~~~l~s~~~d~~ 253 (362)
... .+..+ .++.++.+..+|.+..+|..++....+.... ..... . .+ ....+ .+..++.++.++.
T Consensus 176 ~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~ 252 (377)
T TIGR03300 176 PALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGR 252 (377)
T ss_pred CceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCE
Confidence 111 01111 2356778888899999998887533221100 00000 0 00 01111 3568888889999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc-EEEEEeeecCCc
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP-VKCLAAAIDNDR 332 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~-v~~~~~~~~~~~ 332 (362)
++.||..+++.. . ... ..........++.+..++.||.+..++... ++.+.....-... ......
T Consensus 253 l~a~d~~tG~~~-W---~~~--~~~~~~p~~~~~~vyv~~~~G~l~~~d~~t--G~~~W~~~~~~~~~~ssp~i------ 318 (377)
T TIGR03300 253 VAALDLRSGRVL-W---KRD--ASSYQGPAVDDNRLYVTDADGVVVALDRRS--GSELWKNDELKYRQLTAPAV------ 318 (377)
T ss_pred EEEEECCCCcEE-E---eec--cCCccCceEeCCEEEEECCCCeEEEEECCC--CcEEEccccccCCccccCEE------
Confidence 999999765321 1 111 111223345567888888999999998532 2333222111111 111111
Q ss_pred cCCCCCceEEEecCCCCcEEEEecc
Q 044557 333 CDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 333 ~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+..|+.++.||.|.++|..
T Consensus 319 -----~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 319 -----VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred -----ECCEEEEEeCCCEEEEEECC
Confidence 11246778889999998864
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.2e-07 Score=85.16 Aligned_cols=169 Identities=19% Similarity=0.309 Sum_probs=112.2
Q ss_pred eeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC-------ceEEEeeeccCcccEEEEEEcCCCcEEEEe
Q 044557 131 RRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD-------FKCLESITNAHDDAINAVALSDDGDVYTGS 203 (362)
Q Consensus 131 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~ 203 (362)
...+.+.+.+|+..|+.++.-.+.+-+++++.|++|++|.++. ..|.-+++ .|..+|.++.|-.+.+. .++
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~-i~S 801 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRS-IAS 801 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccce-eee
Confidence 3345677789999999988777888899999999999998764 12444454 79999999998877652 235
Q ss_pred CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec--CCCEEEEE-cCCCcEEEEeccCCCCc-EEEEEeecCcccee
Q 044557 204 ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC--DGSVLYSG-ACDRSIIVWEKEEDDGN-ILVVGALRGHTKSI 279 (362)
Q Consensus 204 ~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~-~~d~~i~~wd~~~~~~~-~~~~~~~~~h~~~v 279 (362)
.||-|.+||.--+......... ..| +.+..+..-| +...++.| +...+|+++|.+..+-. ...+..-.+....+
T Consensus 802 cD~giHlWDPFigr~Laq~~da-pk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDA-PKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred ccCcceeecccccchhHhhhcC-ccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 6889999997655432222111 112 2333343333 44455444 67889999998864321 11222224444556
Q ss_pred EEEEE--eCCeEEEeeCCCcEEEeeC
Q 044557 280 LCMAV--VSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 280 ~~~~~--~~~~~~s~s~D~~i~~W~~ 303 (362)
+++++ .++.++.+-..|+|-+-|.
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEec
Confidence 77776 4568888888999998884
No 272
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.61 E-value=9.5e-07 Score=74.17 Aligned_cols=203 Identities=20% Similarity=0.332 Sum_probs=130.0
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCce-E----EEeeeccC------------cccEEEEEEcCC-Cc--EEE
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-C----LESITNAH------------DDAINAVALSDD-GD--VYT 201 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~----~~~~~~~h------------~~~v~~v~~~~~-~~--~~s 201 (362)
.+.|+++.|...|.+|++|...|+|.++.-+... | ...++ .| ...|..+.|..+ ++ ++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4568999999999999999888999999754322 1 11122 22 234778888754 43 788
Q ss_pred EeCCCeEEEEeCCCCC-------------------Ccce---e-eh----------------hhhccccceeEEEEecCC
Q 044557 202 GSADKKIKVWRRSPGN-------------------KKHS---L-VD----------------VLERHNSGINALALSCDG 242 (362)
Q Consensus 202 ~~~dg~i~iw~~~~~~-------------------~~~~---~-~~----------------~~~~h~~~v~~i~~s~~~ 242 (362)
.+.|++|++|.+.... +..+ + .. ....|..-+++++|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8999999999865431 0000 0 00 013467778899999888
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc-----ceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCc-----ee
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT-----KSILCMAVVSD---LVCSGSADKTIRIWRGIDRN-----YT 309 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~-----~~ 309 (362)
..++++. |-.|.+|.++-..+...++. ++-|. .-|++-.|.+. .+.=.|..|.|++-|+.+.. .+
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVD-iKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVD-IKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEe-ccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 8888764 77899999887666554432 33333 23566667654 45556667999999864211 00
Q ss_pred ---------eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 310 ---------CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 310 ---------~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
...-+.+-.+.|.++.|+++ +++|+|-+. -+++|||+.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~n---------gryIlsRdy-ltvkiwDvn 309 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDN---------GRYILSRDY-LTVKIWDVN 309 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCC---------CcEEEEecc-ceEEEEecc
Confidence 01113344557788888654 456766544 579999984
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=0.00029 Score=60.87 Aligned_cols=276 Identities=11% Similarity=0.164 Sum_probs=147.3
Q ss_pred CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC---CcEEEEecCCCCCCcccceeeeecc
Q 044557 38 DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD---HKIRVWKINNQEPDHQKYTRLATLP 112 (362)
Q Consensus 38 Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~ 112 (362)
.+-|.+|++.+..+.+.... +....+..+-|.+.++ .|+++..+ |.|-.|.++...... +.+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~------~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L---t~ln~~~ 85 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ------LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL---TFLNRQT 85 (346)
T ss_pred CCceEEEEEeCcccccchhh------hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE---EEeeccc
Confidence 57799999886443321110 0112334455566554 38887554 667777776432100 0000000
Q ss_pred CCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC-CCcEEEEECCC-ceEEEee-eccCccc--
Q 044557 113 TLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW-DRTIKIWRTSD-FKCLESI-TNAHDDA-- 187 (362)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-d~~i~iwd~~~-~~~~~~~-~~~h~~~-- 187 (362)
.-..+..-+++++++++|+++.- -|.|.++-++. +...... ...|.+.
T Consensus 86 ---------------------------~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p 138 (346)
T COG2706 86 ---------------------------LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP 138 (346)
T ss_pred ---------------------------cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCC
Confidence 00112366889999999998864 47899998865 3322110 1124444
Q ss_pred --------EEEEEEcCCCcEEEE---eCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEE
Q 044557 188 --------INAVALSDDGDVYTG---SADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSII 255 (362)
Q Consensus 188 --------v~~v~~~~~~~~~s~---~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~ 255 (362)
+.+..+.|+++++.+ +.| .|.+|+++.+.....-...+ ....+-.-|.|+|++++.+... .+++|.
T Consensus 139 ~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~ 216 (346)
T COG2706 139 HERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVD 216 (346)
T ss_pred CccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEE
Confidence 778889999984433 234 68899998664322211112 2345678899999999887665 589999
Q ss_pred EEeccCCCCcEEEEEee---cC---ccceeEEEEEeCC--eE-EEeeCCCcEEEeeCCCCcee--eeeEecCCCCcEEEE
Q 044557 256 VWEKEEDDGNILVVGAL---RG---HTKSILCMAVVSD--LV-CSGSADKTIRIWRGIDRNYT--CLAVLEGHRGPVKCL 324 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~---~~---h~~~v~~~~~~~~--~~-~s~s~D~~i~~W~~~~~~~~--~~~~l~~h~~~v~~~ 324 (362)
+|......+++..+..+ +. -......+..+++ +| ++--....|-++.+....++ .+....-+...-...
T Consensus 217 v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F 296 (346)
T COG2706 217 VLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF 296 (346)
T ss_pred EEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc
Confidence 99987643333222221 11 0122344555443 43 33333446777765433222 122211122222222
Q ss_pred EeeecCCccCCCCCceEEEecCC-CCcEEEEecccCc
Q 044557 325 AAAIDNDRCDSSDTSYLVCSGSL-DCDIKVWQISFPL 360 (362)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~s~s~-D~~i~~W~~~~~~ 360 (362)
.| ++++.+|+.+.. +.+|.++..+..|
T Consensus 297 ~i---------~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 297 NI---------NPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ee---------CCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 22 233444555544 4459999886544
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.53 E-value=5.1e-05 Score=77.70 Aligned_cols=203 Identities=15% Similarity=0.163 Sum_probs=120.0
Q ss_pred ceeEEEEecCCCEEEEEE-CCCcEEEEECCCceEEEeeecc-C---------------cccEEEEEEcC-CCc-EEEEeC
Q 044557 144 AVSALALTKDETLLYSVS-WDRTIKIWRTSDFKCLESITNA-H---------------DDAINAVALSD-DGD-VYTGSA 204 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~-h---------------~~~v~~v~~~~-~~~-~~s~~~ 204 (362)
....++++++++.|+.+. .++.|+++|..++.. .++... . -.....++++| ++. +++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 457889999888666654 557899999877643 222100 0 01235789998 555 456677
Q ss_pred CCeEEEEeCCCCCCcceeeh-----hhhc------cccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEe-
Q 044557 205 DKKIKVWRRSPGNKKHSLVD-----VLER------HNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGA- 271 (362)
Q Consensus 205 dg~i~iw~~~~~~~~~~~~~-----~~~~------h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~- 271 (362)
++.|++||..++... .+.. ...+ .-.....|+++|++..|+ +-+.++.|++||+.++... ...+.
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGD 781 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecc
Confidence 889999998765311 1100 0000 112346799999998555 5556789999998754321 11110
Q ss_pred ---------ec---C-----ccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeE-----------ecCCCCcE
Q 044557 272 ---------LR---G-----HTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAV-----------LEGHRGPV 321 (362)
Q Consensus 272 ---------~~---~-----h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~-----------l~~h~~~v 321 (362)
+. + .......+++++ +++++-+.++.|++|+........+.. ..++-...
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 00 0 011224566654 478888999999999954322111110 11122345
Q ss_pred EEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 322 KCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..++++++ +.++++-+.+++|++||+..
T Consensus 862 ~GIavd~d---------G~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 862 AGLALGEN---------GRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eEEEEeCC---------CCEEEEECCCCEEEEEECCC
Confidence 66777544 34677778899999999864
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.52 E-value=0.00029 Score=71.10 Aligned_cols=312 Identities=13% Similarity=0.151 Sum_probs=161.0
Q ss_pred CccceeeeEe--cCcEEEEecCCCeEEEe----ecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEEecCCc
Q 044557 18 HNSYVSSLAL--AGKFLYTGSSDNEVRSW----DCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSAHQDHK 89 (362)
Q Consensus 18 H~~~V~~l~~--~~~~l~t~s~Dg~i~vW----d~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~~~dg~ 89 (362)
..+.|.++.+ ....++.+..+|.|-+. +..... .+ ++-.-...+.++.+++|. |+.++.+++
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----~E------~VG~vd~GI~a~~WSPD~Ella~vT~~~~ 143 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----IE------IVGSVDSGILAASWSPDEELLALVTGEGN 143 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----eE------EEEEEcCcEEEEEECCCcCEEEEEeCCCE
Confidence 3467777777 35567777888999888 433221 11 111224678899998875 666666777
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhcccccccee------------eeee-----eeEEeeecCceeEEEEec
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQI------------RRHK-----TCTWVHHVDAVSALALTK 152 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~-----~~~~~~h~~~v~~~~~~~ 152 (362)
+-+-.-+ .++..+. .+.....+....+...-+....|. +... ..... +.+.-..++|-.
T Consensus 144 l~~mt~~-fd~i~E~--~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 144 LLLMTRD-FDPISEV--PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG 219 (928)
T ss_pred EEEEecc-ceEEEEe--ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence 6664321 1110000 000000000000000000000000 0000 00111 344567889999
Q ss_pred CCCEEEEEEC---C---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeC----CCeEEEEeCCCCCCccee
Q 044557 153 DETLLYSVSW---D---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSA----DKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 153 ~~~~l~s~s~---d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~----dg~i~iw~~~~~~~~~~~ 222 (362)
||.+||+.+- . +.||||+-+ +..... ...-.+--.+++|.|.|.++++.. ...|.+|... |.....+
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st-SE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF 296 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQST-SEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEF 296 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ceEEec-cccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeE
Confidence 9999998874 2 579999865 443222 112222234689999999665543 2467777543 3222222
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCC---eEEEeeCCCcE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSD---LVCSGSADKTI 298 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~---~~~s~s~D~~i 298 (362)
.-........|..+.|++|+..|+.--.|. |.+|-..+.. +.+-..+.. ....+..+.|+++ .+...+.++.+
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH--WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH--WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY 373 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE--EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence 111223456789999999999999977665 9999876432 211112221 1222334666543 45445554555
Q ss_pred EEeeCC-----CC-----ceeeeeEec-----------------------CCCCcEEEEEeeecCCccCCCCCceEEEec
Q 044557 299 RIWRGI-----DR-----NYTCLAVLE-----------------------GHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 299 ~~W~~~-----~~-----~~~~~~~l~-----------------------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 345 (362)
..++.. .. ....+..+. .-...|.+++|+++.. .++.-
T Consensus 374 ~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~---------~~avl 444 (928)
T PF04762_consen 374 EIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS---------RFAVL 444 (928)
T ss_pred EEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC---------eEEEE
Confidence 444310 00 000111111 1345788888876542 15666
Q ss_pred CCCCcEEEEeccc
Q 044557 346 SLDCDIKVWQISF 358 (362)
Q Consensus 346 s~D~~i~~W~~~~ 358 (362)
..||+|.+|+...
T Consensus 445 ~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 445 TSDGSLSIYEWDL 457 (928)
T ss_pred ECCCCEEEEEecC
Confidence 7799999998643
No 276
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.49 E-value=5e-05 Score=63.52 Aligned_cols=187 Identities=16% Similarity=0.229 Sum_probs=111.6
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc------CcccEEEEEEcCCC-------cEEEEeCCCeEEEE
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA------HDDAINAVALSDDG-------DVYTGSADKKIKVW 211 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------h~~~v~~v~~~~~~-------~~~s~~~dg~i~iw 211 (362)
-+-++|+||+.+||.+...|+|+++|+...... .+... -..+|-.+.|.+-. .++.-..+|.++=|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 356889999999999999999999998764332 22111 23467777775322 47788889888888
Q ss_pred eCCCCC-Ccceeeh--hh-hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--
Q 044557 212 RRSPGN-KKHSLVD--VL-ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-- 285 (362)
Q Consensus 212 ~~~~~~-~~~~~~~--~~-~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-- 285 (362)
-+..+. ....... .+ ..+..+|+++.++|.-+.|+.||.... + .+ .-++....+.++..-
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~--~~------~s~a~~~GLtaWRiL~~ 190 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------Q--DG------MSKASSCGLTAWRILSD 190 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------C--Cc------cccccccCceEEEEcCC
Confidence 764321 1111111 11 224678999999999888888875432 0 00 001223334555442
Q ss_pred -CCe-EEEeeCCCcE------EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 286 -SDL-VCSGSADKTI------RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 286 -~~~-~~s~s~D~~i------~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|-+ .++.++|+.. -+|+... .........-.+.|..+..+|++ .+||+...+|.|-+|+++
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPdg---------~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPDG---------SLLACIHFSGSLSLWEIP 259 (282)
T ss_pred CCcEEEccccCccccccccccceeeccc--eeeeeccccCCCceEEEEECCCC---------CEEEEEEcCCeEEEEecC
Confidence 222 2333333322 2333211 11111112356789999998775 469999999999999984
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.45 E-value=0.00022 Score=63.45 Aligned_cols=107 Identities=19% Similarity=0.269 Sum_probs=70.0
Q ss_pred Eec-CCCEEEEEECCCcEEEEECCCc-----eEEEeeecc------CcccEEEEEEcCCCc-EEEEe----------CCC
Q 044557 150 LTK-DETLLYSVSWDRTIKIWRTSDF-----KCLESITNA------HDDAINAVALSDDGD-VYTGS----------ADK 206 (362)
Q Consensus 150 ~~~-~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~~------h~~~v~~v~~~~~~~-~~s~~----------~dg 206 (362)
|.+ ++++++...+ |+|.+-|+... +.+..+..+ ..+...-++++|++. ++... ..+
T Consensus 201 ~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 201 YSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred eEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 344 8888877766 99999996442 222222111 112234489998875 54421 225
Q ss_pred eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC-EEEEEc-CCCcEEEEeccCC
Q 044557 207 KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGA-CDRSIIVWEKEED 262 (362)
Q Consensus 207 ~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-~d~~i~~wd~~~~ 262 (362)
.|.++|..+.+....+. -...+..++++||++ +|++.. .++.|.++|..+.
T Consensus 280 ~V~ViD~~t~kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIE-----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEEEECCCCeEEEEEe-----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 89999988765433321 134688999999999 888666 6888999998764
No 278
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=0.00013 Score=67.63 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=82.2
Q ss_pred eEEEEecCCCEEEEEEC-----CCcEEEEECCCc--eEEEeeeccCcccEEEEEEcCCCc-EEE-EeCCCeEEEEeC--C
Q 044557 146 SALALTKDETLLYSVSW-----DRTIKIWRTSDF--KCLESITNAHDDAINAVALSDDGD-VYT-GSADKKIKVWRR--S 214 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~-----d~~i~iwd~~~~--~~~~~~~~~h~~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~--~ 214 (362)
...+|+|||+.|+..+. |-.+.+|++..+ .....+...+.......+|+|+|+ ++. ...+|...+|.+ .
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 45689999988776553 223455776542 112223322223345678999997 554 345676666643 2
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eE
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LV 289 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~ 289 (362)
....... .+..+...+....|+|||+.|+..+.+ ..|.+||+..++. ..+ ......+....|+++ .+
T Consensus 314 ~~g~~~~---~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~L---t~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 314 PEGQSPR---LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQL---TTSPENKESPSWAIDSLHL 385 (428)
T ss_pred ccccceE---EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEc---cCCCCCccceEECCCCCEE
Confidence 2111111 122233456788999999988866543 3688999876432 222 212223445666654 44
Q ss_pred E-EeeCC--CcEEEeeCC
Q 044557 290 C-SGSAD--KTIRIWRGI 304 (362)
Q Consensus 290 ~-s~s~D--~~i~~W~~~ 304 (362)
+ ++..+ ..|.+|+..
T Consensus 386 ~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 386 VYSAGNSNESELYLISLI 403 (428)
T ss_pred EEEECCCCCceEEEEECC
Confidence 3 43333 446666653
No 279
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=7.4e-05 Score=69.28 Aligned_cols=195 Identities=15% Similarity=0.047 Sum_probs=102.1
Q ss_pred ceeEEEEecCCCE---EEEEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEE-EeC----CCeEEEEe
Q 044557 144 AVSALALTKDETL---LYSVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYT-GSA----DKKIKVWR 212 (362)
Q Consensus 144 ~v~~~~~~~~~~~---l~s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s-~~~----dg~i~iw~ 212 (362)
...+=.|+|||+. +++...++ .|.+.++.+++..+ +. .........+|+|||+ ++. ... |..+.+|+
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-IL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-ee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 3445589999974 33444444 46777887765433 22 1233344678999996 443 322 32344467
Q ss_pred CCCCC--CcceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEec--cCCCCcEEEEEeecCccceeEEEEEeCC
Q 044557 213 RSPGN--KKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEK--EEDDGNILVVGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 213 ~~~~~--~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~--~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (362)
+..+. ....+. ..+.......+|+|||+.|+..+ .+|...+|.+ ........ .+..+...+....|+++
T Consensus 264 ~~~g~~g~~~~lt---~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~---~lt~~~~~~~~p~wSPD 337 (428)
T PRK01029 264 LETGAIGKPRRLL---NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR---LLTKKYRNSSCPAWSPD 337 (428)
T ss_pred cccCCCCcceEee---cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE---EeccCCCCccceeECCC
Confidence 65431 111121 11222345689999999877655 5676556643 22112121 22233344556667654
Q ss_pred --eEEEeeC-C--CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCC--CCcEEEEecc
Q 044557 288 --LVCSGSA-D--KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL--DCDIKVWQIS 357 (362)
Q Consensus 288 --~~~s~s~-D--~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~--D~~i~~W~~~ 357 (362)
.++..+. + ..|.+|+...... ..+......+....|+|++. .+++++.. +..|.+|++.
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~~~p~wSpDG~--------~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENKESPSWAIDSL--------HLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCccceEECCCCC--------EEEEEECCCCCceEEEEECC
Confidence 5554433 2 3588888644332 23332233456677776543 34444433 3457777764
No 280
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=0.00012 Score=68.36 Aligned_cols=109 Identities=19% Similarity=0.126 Sum_probs=65.2
Q ss_pred eEEEEecCCCEEEE-EECCCc--EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCe--EEEEeCCCCCC
Q 044557 146 SALALTKDETLLYS-VSWDRT--IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKK--IKVWRRSPGNK 218 (362)
Q Consensus 146 ~~~~~~~~~~~l~s-~s~d~~--i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~--i~iw~~~~~~~ 218 (362)
...+|+||++.|+. .+.++. |.++|+.+++..+ +. .+.......+|+|+|+ ++ +...++. |.++|+.++..
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-IT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 35689999997764 566665 7777887765433 33 2344556788999997 43 3434444 55566665532
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcC-CCc--EEEEeccC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGAC-DRS--IIVWEKEE 261 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~--i~~wd~~~ 261 (362)
..+. .. .......+|+|||++|+..+. ++. |.++|+.+
T Consensus 343 -~~Lt--~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 343 -SRLT--FE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred -EEEe--cC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence 1221 11 122334689999999877655 343 44456554
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.40 E-value=0.00061 Score=70.00 Aligned_cols=158 Identities=12% Similarity=0.103 Sum_probs=100.1
Q ss_pred eeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEeee--------cc------CcccEEEEEEcCCCc-E-EEEeCCCe
Q 044557 145 VSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESIT--------NA------HDDAINAVALSDDGD-V-YTGSADKK 207 (362)
Q Consensus 145 v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--------~~------h~~~v~~v~~~~~~~-~-~s~~~dg~ 207 (362)
...++++| ++.++++.+.++.|++||..++.... +. .+ .-.....++++|++. + ++...++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 35789999 56667777888999999988765421 11 00 012346799999886 4 45567799
Q ss_pred EEEEeCCCCCCccee---------ehhhhc--------cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEE
Q 044557 208 IKVWRRSPGNKKHSL---------VDVLER--------HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVG 270 (362)
Q Consensus 208 i~iw~~~~~~~~~~~---------~~~~~~--------h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 270 (362)
|++||+.++...... ...+.. .-.....++++++|..+++-..+++|++||..+.. ...+.
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~--v~tia 841 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR--VTTLA 841 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe--EEEEe
Confidence 999998765321000 000000 01123578999999988888999999999986532 11111
Q ss_pred e-----------ecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCC
Q 044557 271 A-----------LRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 271 ~-----------~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~ 305 (362)
. ..+.......+++++ .++++-+.++.|++|+...
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 1 011122345667654 4788888999999999644
No 282
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=9.8e-05 Score=69.04 Aligned_cols=269 Identities=14% Similarity=0.161 Sum_probs=153.4
Q ss_pred ccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceee------eccceeEEeecceeEEEEEcCc--eeEEEecCC
Q 044557 19 NSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEF------LSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDH 88 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~------~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg 88 (362)
+....++.|. ..|++.||.||.+|+-.+.+........- ..-.+.+-.|.+.|.-+.++.+ +|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3455788884 67999999999999999876543221110 0011223445667776667643 588888999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
.|-+|-+-.+.-... +.+ ......|.+++|+.||..++..-+||.|.+
T Consensus 94 lIiVWmlykgsW~EE------------------MiN--------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEE------------------MIN--------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred eEEEEeeecccHHHH------------------Hhh--------------CcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 999997754321000 000 013456889999999999999999999988
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee--------ehhhhccccceeEEEEe
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL--------VDVLERHNSGINALALS 239 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~--------~~~~~~h~~~v~~i~~s 239 (362)
=.++..+...+-.++ .-...+.|++|.+ ++.+-.+|.+.+||.+..- ..++ ...+......+..+.|.
T Consensus 142 GsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF-~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNF-ERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred Eeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccH-HHhhhhceEEeeeeeecCCCccccceeec
Confidence 777665443321111 1223577999987 5667788999999865321 1011 00011112224444442
Q ss_pred --------cCCCEEEEEcCCCcEEEEeccCCCCcE------EEEEeecCccceeEEEEEeCCeEEEeeCC-CcEEEeeCC
Q 044557 240 --------CDGSVLYSGACDRSIIVWEKEEDDGNI------LVVGALRGHTKSILCMAVVSDLVCSGSAD-KTIRIWRGI 304 (362)
Q Consensus 240 --------~~~~~l~s~~~d~~i~~wd~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~s~s~D-~~i~~W~~~ 304 (362)
||...|+.+-..|.+.+-.-++...+. ..++....|.+.|++++-... -+-.-.| +.|.++...
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~-da~~~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS-DADEPTDSNKVHFYSPY 297 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcc-cccCccccceEEEeccc
Confidence 588899999988888766544332221 122222234444443332110 0001122 356666532
Q ss_pred CCceeeeeEecCCCCcEEEEEe
Q 044557 305 DRNYTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 305 ~~~~~~~~~l~~h~~~v~~~~~ 326 (362)
+.-+.+|+--...|++++|
T Consensus 298 ---G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 298 ---GHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred ---hhheEEEecCCceeeeeEE
Confidence 2334555555667777766
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.38 E-value=0.0011 Score=66.99 Aligned_cols=181 Identities=17% Similarity=0.280 Sum_probs=108.3
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEee------------------------------------ec---
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI------------------------------------TN--- 182 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------------------------------------~~--- 182 (362)
...|.+++||||+..|+..+.++++.+-.. ++..+... ..
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 457999999999999999999998887642 22111100 00
Q ss_pred c--------CcccEEEEEEcCCCcEEEE-e---C-C--CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE
Q 044557 183 A--------HDDAINAVALSDDGDVYTG-S---A-D--KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 183 ~--------h~~~v~~v~~~~~~~~~s~-~---~-d--g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 247 (362)
. +.+.-..++|-.||.+++. + . . +.+|||+.+ |. +..+.+.-.+--.+++|.|.|+.||+
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~----L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE----LQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce----EEeccccCCCccCCccCCCCCCEEEE
Confidence 0 1223356788899985432 2 1 2 589999876 32 11111111222346899999999998
Q ss_pred EcC---CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEec-CCCCcE
Q 044557 248 GAC---DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLE-GHRGPV 321 (362)
Q Consensus 248 ~~~---d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~-~h~~~v 321 (362)
.-. .-.|.+|....-+.....+ .+......|..+.|+.+ .||..-.|. |.+|...+..+.+-+.+. .....+
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l-~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTL-RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEec-CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCC
Confidence 865 3457777654322221111 11234456888999754 677666655 999986665665555554 223345
Q ss_pred EEEEeeecC
Q 044557 322 KCLAAAIDN 330 (362)
Q Consensus 322 ~~~~~~~~~ 330 (362)
..+.|+|+.
T Consensus 352 ~~~~Wdpe~ 360 (928)
T PF04762_consen 352 NFVKWDPEK 360 (928)
T ss_pred CceEECCCC
Confidence 557887763
No 284
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=5.2e-06 Score=73.14 Aligned_cols=207 Identities=18% Similarity=0.251 Sum_probs=126.5
Q ss_pred CccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEEec-CCcEEEE
Q 044557 18 HNSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSAHQ-DHKIRVW 93 (362)
Q Consensus 18 H~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~~~-dg~i~~w 93 (362)
|.+.|+-+... .+++.+++.||.+|.|.-.... -.++.- ....|-+.+.++..+-+. +.|.+. |..++++
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~is---GvEfVK---hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRIS---GVEFVK---HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCcc---ceeehh---hhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 78888888875 7899999999999999643211 111111 112234455566555444 445455 8999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec-CceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV-DAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
|+.+..... ..++..+|. ...+.... +.+. .+-++.-.++.+.++|-.
T Consensus 82 DvEn~Dmin--miKL~~lPg---------------------~a~wv~skGd~~s--------~IAVs~~~sg~i~VvD~~ 130 (558)
T KOG0882|consen 82 DVENFDMIN--MIKLVDLPG---------------------FAEWVTSKGDKIS--------LIAVSLFKSGKIFVVDGF 130 (558)
T ss_pred Eeeccchhh--hcccccCCC---------------------ceEEecCCCCeee--------eEEeecccCCCcEEECCc
Confidence 987644211 001111111 00000000 1111 122333467899999976
Q ss_pred Cce-EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCC-CCcce-e---------ehhhhccccceeEEEEe
Q 044557 173 DFK-CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPG-NKKHS-L---------VDVLERHNSGINALALS 239 (362)
Q Consensus 173 ~~~-~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~-~~~~~-~---------~~~~~~h~~~v~~i~~s 239 (362)
..- ....+...|..+|..+.++|-+. +++....|.|.-|..+.. ..... + ...+.......+++.|+
T Consensus 131 ~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs 210 (558)
T KOG0882|consen 131 GDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS 210 (558)
T ss_pred CCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEc
Confidence 543 33445567999999999999887 778888999999987631 00000 0 11112234557889999
Q ss_pred cCCCEEEEEcCCCcEEEEeccC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
|+|..+.+-+.|..||++...+
T Consensus 211 p~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 211 PDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred cccCcccccCcccEEEEEEecc
Confidence 9999999999999999998754
No 285
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=0.0001 Score=68.74 Aligned_cols=127 Identities=17% Similarity=0.080 Sum_probs=73.5
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeC-C--CeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSA-D--KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~-d--g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
.|.++|....+. +.+. .+...+...+|+|+|+ ++..+. + ..|.+|++.++... . +. .....+....|+|
T Consensus 180 ~l~~~d~~g~~~-~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~-l~---~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARA-VTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-Q-IT---NFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCc-eEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-E-cc---CCCCCcCCeEECC
Confidence 477777765543 3333 3566788999999997 544432 2 36888998776422 1 11 1223345689999
Q ss_pred CCCEEE-EEcCCC--cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEE-EeeCCCc--EEEeeC
Q 044557 241 DGSVLY-SGACDR--SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVC-SGSADKT--IRIWRG 303 (362)
Q Consensus 241 ~~~~l~-s~~~d~--~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~-s~s~D~~--i~~W~~ 303 (362)
||+.|+ +.+.++ .|.+||+.++. .. .+..+........|+++ .++ +...++. |.+++.
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~--~~---~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQ--LS---RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC--eE---EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 999877 455555 57778887543 22 22333333444566654 444 4434444 555554
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=3e-06 Score=72.21 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=109.0
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
++.+.+..|-+-|++++... .+. -.+.|.++.|...+. ++.|..+|.|..+|+.....-.......-.|...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 45566788888888876432 222 345677778877555 67899999999999987632211111222488999998
Q ss_pred EEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE----eCCeEEEeeCCCcEEEeeCCCCceeee
Q 044557 237 ALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV----VSDLVCSGSADKTIRIWRGIDRNYTCL 311 (362)
Q Consensus 237 ~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~----~~~~~~s~s~D~~i~~W~~~~~~~~~~ 311 (362)
..-. ++++|++.+.+|.|++||++--+.. .-+....||...-.-+.+ ....+++++.|..-|||+... +.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~-~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~--ghLl 381 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCK-KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS--GHLL 381 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcc-cceeeeecccccccccccccccccceEEEccCeeEEEEEeccc--Ccee
Confidence 8766 7899999999999999998754332 234567788765433332 234889999999999998643 3333
Q ss_pred eEec----CCCCcEEEEEeee
Q 044557 312 AVLE----GHRGPVKCLAAAI 328 (362)
Q Consensus 312 ~~l~----~h~~~v~~~~~~~ 328 (362)
.++. .-..-++.++|..
T Consensus 382 ~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 382 CTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eccCCCCccccccccceehhc
Confidence 3321 1222456666653
No 287
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.31 E-value=0.0022 Score=57.16 Aligned_cols=199 Identities=10% Similarity=0.088 Sum_probs=104.9
Q ss_pred eEEEEecCCCEEEEEE-C-CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee-
Q 044557 146 SALALTKDETLLYSVS-W-DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL- 222 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s-~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~- 222 (362)
..++++|||++|+... . +..|.+.|+.+++.+.++..+. ...-...+ +..+.+-+.||......+++..+....
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~--~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD--CYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC--CcEEEEec-CCccEEEeecCceEEEEecCCCceEEee
Confidence 3567899999998776 3 6899999999999888775422 11112222 222223344444444333322211100
Q ss_pred ehhhhccccceeE-EEEec-CCCEEEEEcCCCcEEEEeccCCCCcE-EEEEeec------C-ccceeEEEEEeCC--eEE
Q 044557 223 VDVLERHNSGINA-LALSC-DGSVLYSGACDRSIIVWEKEEDDGNI-LVVGALR------G-HTKSILCMAVVSD--LVC 290 (362)
Q Consensus 223 ~~~~~~h~~~v~~-i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~------~-h~~~v~~~~~~~~--~~~ 290 (362)
...+..-..++.. -.|++ +|++++.... |+|.+-|+....... ..+..+. + ..+...-++++++ .+.
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 0000000001100 03455 8888888877 999999964422111 1111111 0 1223334666643 333
Q ss_pred E-e-e--------CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 291 S-G-S--------ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 291 s-~-s--------~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
. . . ..+.|-++|. .+.+.+..+.- ...++.++++|+++. .+.++...++.|.+.|.+.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~--~t~kvi~~i~v-G~~~~~iavS~Dgkp-------~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDA--KTGKRLRKIEL-GHEIDSINVSQDAKP-------LLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEecCCccccccCCCCEEEEEEC--CCCeEEEEEeC-CCceeeEEECCCCCe-------EEEEeCCCCCcEEEEECcC
Confidence 2 2 1 1246777774 34555665541 337999999887541 2344445678899999864
No 288
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.0003 Score=67.23 Aligned_cols=223 Identities=17% Similarity=0.267 Sum_probs=130.3
Q ss_pred ceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCC-----cEEEE
Q 044557 21 YVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDH-----KIRVW 93 (362)
Q Consensus 21 ~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg-----~i~~w 93 (362)
.|++++-++..+|-|+.||.|-+.+-.- .....+. +.....+..+.... +.|++.+.|+ .|++|
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fq------a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQ------AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc---eeeehhe------ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence 7777777788999999999998776321 0101110 11111133332333 3577777665 49999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeE--EeeecCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCT--WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
+++..++..++ ..+..+ +..+ ......++.+++++.+-+.+|+|-.||.|..+.-
T Consensus 98 ~lek~~~n~sP-~c~~~~----------------------ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 98 DLEKVDKNNSP-QCLYEH----------------------RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG 154 (933)
T ss_pred cccccCCCCCc-ceeeee----------------------eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence 98755322210 000000 0000 0012346788999999999999999999999852
Q ss_pred C---CceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE
Q 044557 172 S---DFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 172 ~---~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 247 (362)
. +.-....+...-.++|+.+++..++. ++-+.+-..|.+|.+. ++. .....+..|..+++|.++++....+++
T Consensus 155 Di~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~--p~~~~ld~~G~~lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 155 DILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRT--PSLKVLDNNGISLNCSSFSDGTYQFIC 231 (933)
T ss_pred cchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCC--cceeeeccCCccceeeecCCCCccEEE
Confidence 2 11112223334567999999988776 2333444579999887 332 123345667788999998875554555
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeec-CccceeEEEE
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALR-GHTKSILCMA 283 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~-~h~~~v~~~~ 283 (362)
++ +..+.+|+..... ..-++. ||.....++.
T Consensus 232 a~-~e~l~fY~sd~~~----~cfaf~~g~kk~~~~~~ 263 (933)
T KOG2114|consen 232 AG-SEFLYFYDSDGRG----PCFAFEVGEKKEMLVFS 263 (933)
T ss_pred ec-CceEEEEcCCCcc----eeeeecCCCeEEEEEEe
Confidence 55 4568899876422 122344 6666555444
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.30 E-value=0.0002 Score=63.92 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=89.1
Q ss_pred eecCceeEEEEecCCCEEEEEECCC-cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDR-TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
+|...|.-..+..+.+-++.|..|| .+-|+|.++++..+ +. ..-+.|.++..+|+|+ ++.+....++.+.|+++++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e-~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IE-KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-ee-CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 5667788888887888899999999 99999999887544 32 4567899999999998 5666666789999999886
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCC----cEEEEecc
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDR----SIIVWEKE 260 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~----~i~~wd~~ 260 (362)
.. ++. +...+-|+.++|+|+++++|-+--+| .|++||+.
T Consensus 435 v~--~id--kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 435 VR--LID--KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred ee--Eec--ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 32 222 12345689999999999999887776 47888864
No 290
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=0.00029 Score=64.05 Aligned_cols=129 Identities=12% Similarity=0.259 Sum_probs=88.7
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEE--EeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYT--GSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s--~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
+.++.+.+++...+.-.+ .-+++|.++.|+|+++ ++. |-.=-++.|||+.. .... .-..++=+++-|+
T Consensus 250 Eq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~------df~egpRN~~~fn 320 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVF------DFPEGPRNTAFFN 320 (566)
T ss_pred cceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeE------eCCCCCccceEEC
Confidence 467888888855554444 3578999999999996 443 44556899998763 2221 2235566789999
Q ss_pred cCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEee------CCCcEEEeeCC
Q 044557 240 CDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGS------ADKTIRIWRGI 304 (362)
Q Consensus 240 ~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s------~D~~i~~W~~~ 304 (362)
|.|++|+.+|.+ |.|-+||..+.. .+..+......+..++.++++++|+. .|+.+|||+..
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K----~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRK----LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchh----hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 999999988865 579999997622 34445444444444555566777665 48999999864
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=7.2e-05 Score=69.90 Aligned_cols=207 Identities=14% Similarity=0.119 Sum_probs=129.2
Q ss_pred EEEEEc--CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEE
Q 044557 72 KSLVVL--ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALA 149 (362)
Q Consensus 72 ~~i~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 149 (362)
.++.++ .++++.|+.||.+++-.+.+..+..+... ++.... + ...+++.+|.+.|..+.
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~sn-------L-----------smNQtLeGH~~sV~vvT 78 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASN-------L-----------SMNQTLEGHNASVMVVT 78 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccc-cccccc-------c-----------chhhhhccCcceEEEEE
Confidence 345554 35699999999999999876543222110 110000 0 01134568999999999
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEee-eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESI-TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
|+.+.+.|-+...+|.|.+|=+-.+...+.+ ..-..+.|.+++|+.+|. +...-.||.|.+=.++. +. ..-+.++
T Consensus 79 WNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NR--IwgKeLk 155 (1189)
T KOG2041|consen 79 WNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NR--IWGKELK 155 (1189)
T ss_pred eccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ce--ecchhcc
Confidence 9999999999999999999988776543332 233456789999998885 77777888776654432 11 1111121
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC-------CcEEEEEeecCccceeEEEEEe--------CC--eEE
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD-------GNILVVGALRGHTKSILCMAVV--------SD--LVC 290 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~-------~~~~~~~~~~~h~~~v~~~~~~--------~~--~~~ 290 (362)
+ .-...+.|++|.+.++-+-..|.+.+||.+.+- ......+.+......|..+.|. |+ .++
T Consensus 156 g--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la 233 (1189)
T KOG2041|consen 156 G--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA 233 (1189)
T ss_pred h--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence 1 113357899999999888889999999965321 1111122222122223344332 22 688
Q ss_pred EeeCCCcEEEee
Q 044557 291 SGSADKTIRIWR 302 (362)
Q Consensus 291 s~s~D~~i~~W~ 302 (362)
.+-..|.+.+-+
T Consensus 234 vcy~nGr~QiMR 245 (1189)
T KOG2041|consen 234 VCYANGRMQIMR 245 (1189)
T ss_pred EEEcCceehhhh
Confidence 888888888775
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.17 E-value=0.0024 Score=58.75 Aligned_cols=265 Identities=10% Similarity=0.050 Sum_probs=137.5
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCccccee
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 107 (362)
.+..++.++.++.+.-+|.++.+..+...... ....+..+.++.++.+..++.|..+|.++++........
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---------~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---------EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC---------ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 34566667788888888877654332221110 011122334566777888888888888766532110000
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCc--
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD-- 185 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~-- 185 (362)
.+.. .......++ + . +..++.++.++.+...|.++++.+-.......
T Consensus 190 ---~~~~----------------------~~~~~~sP~--v--~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~ 238 (394)
T PRK11138 190 ---VPSL----------------------TLRGESAPA--T--A--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG 238 (394)
T ss_pred ---CCcc----------------------cccCCCCCE--E--E--CCEEEEEcCCCEEEEEEccCChhhheeccccCCC
Confidence 0000 000000111 1 1 22455567788888888887765432211000
Q ss_pred -c---cEEEEEEcC---CCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 186 -D---AINAVALSD---DGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 186 -~---~v~~v~~~~---~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
. ....+..+| ++.++.++.+|.+.-+|..+++..-+. ... ....+ ..++..|+.++.|+.+...|
T Consensus 239 ~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~--~~~----~~~~~--~~~~~~vy~~~~~g~l~ald 310 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR--EYG----SVNDF--AVDGGRIYLVDQNDRVYALD 310 (394)
T ss_pred ccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee--cCC----CccCc--EEECCEEEEEcCCCeEEEEE
Confidence 0 000111112 566778888999999999887533221 111 11112 22567888888999999999
Q ss_pred ccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEE-EEeeecCCccCCCC
Q 044557 259 KEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKC-LAAAIDNDRCDSSD 337 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~-~~~~~~~~~~~~~~ 337 (362)
..+++.. .....+ .+ ....+....++.+..++.||.+...+.. +++.+....-....+.. ..+.
T Consensus 311 ~~tG~~~-W~~~~~-~~-~~~~sp~v~~g~l~v~~~~G~l~~ld~~--tG~~~~~~~~~~~~~~s~P~~~---------- 375 (394)
T PRK11138 311 TRGGVEL-WSQSDL-LH-RLLTAPVLYNGYLVVGDSEGYLHWINRE--DGRFVAQQKVDSSGFLSEPVVA---------- 375 (394)
T ss_pred CCCCcEE-Eccccc-CC-CcccCCEEECCEEEEEeCCCEEEEEECC--CCCEEEEEEcCCCcceeCCEEE----------
Confidence 8764321 111111 11 1122223456788889999999998853 34444444322222221 1111
Q ss_pred CceEEEecCCCCcEEEEec
Q 044557 338 TSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 338 ~~~~l~s~s~D~~i~~W~~ 356 (362)
++ .|+.++.||.+..++.
T Consensus 376 ~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 376 DD-KLLIQARDGTVYAITR 393 (394)
T ss_pred CC-EEEEEeCCceEEEEeC
Confidence 11 3667789999887764
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00036 Score=66.70 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=117.6
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEeeeccCccc-EEEEEEcCC-CcEEEEeCCC-----eEEEEeCCCCCCcc--
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDA-INAVALSDD-GDVYTGSADK-----KIKVWRRSPGNKKH-- 220 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~-v~~v~~~~~-~~~~s~~~dg-----~i~iw~~~~~~~~~-- 220 (362)
+++.+..+|.|+.||.|.+.+-. .+.++.++ ++... |..+....+ ..+++.+.|+ .+++|+++...+..
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EcCCCceEEEeeccccEEEeccc-ceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 57788899999999999888632 33434443 44444 333333322 2367776665 48999987653222
Q ss_pred eee------h-hhhccccceeEEEEecCCCEEEEEcCCCcEEEEecc--CCCCcEEEEEeecCccceeEEEEEeCC--eE
Q 044557 221 SLV------D-VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKE--EDDGNILVVGALRGHTKSILCMAVVSD--LV 289 (362)
Q Consensus 221 ~~~------~-~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~ 289 (362)
.+. . .......|+++++++.+-+.++.|-.+|.|.++.-. ..++.... -......+|+.+++-.+ .+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~--~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD--YSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee--eeccCCCCceeeEEecCCcee
Confidence 111 1 112235678999999999999999999999988522 11121111 11123467888887432 21
Q ss_pred EEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 290 CSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 290 ~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+=+..-..|.+|...++. ...+.+..|.-.+.|-++++. +..+|++++ .-+.+|+.+
T Consensus 187 lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~--------t~qfIca~~--e~l~fY~sd 243 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDG--------TYQFICAGS--EFLYFYDSD 243 (933)
T ss_pred EEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCC--------CccEEEecC--ceEEEEcCC
Confidence 222333569999876554 446668888888998887543 223565554 467777654
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=5.5e-05 Score=66.89 Aligned_cols=200 Identities=17% Similarity=0.126 Sum_probs=125.2
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEE--eeeccCcccEEEEEEcCCCc-EEEEeC-CCeEEEEeCCCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLE--SITNAHDDAINAVALSDDGD-VYTGSA-DKKIKVWRRSPG 216 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~h~~~v~~v~~~~~~~-~~s~~~-dg~i~iw~~~~~ 216 (362)
|.+.|+-+..+ ..+++.+++-||.++.|.-..-.-++ .-...|-..+.+++.+-++. +.|.+. |..+|++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55556555433 45789999999999999754322121 12246778888999998997 557666 999999999875
Q ss_pred CCcceeehhhhccccceeEEEEecCC---CEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDG---SVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVC 290 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~---~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~ 290 (362)
....-+ . +..-+..+ -.+...| ..|+ +.-.++.|.++|-....... ....+-|..+|.++.+. .+.++
T Consensus 87 Dminmi-K-L~~lPg~a--~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 87 DMINMI-K-LVDLPGFA--EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred chhhhc-c-cccCCCce--EEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc--ceecccccCceEEEEeecccccee
Confidence 432111 1 11111111 1122223 1333 34467889999976543322 22344589999999886 45788
Q ss_pred EeeCCCcEEEeeCCCCceee--------------eeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 291 SGSADKTIRIWRGIDRNYTC--------------LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 291 s~s~D~~i~~W~~~~~~~~~--------------~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|....|.|.-|.... .++. +-.+..-+....++.|+|++. .+.+-+.|..||++++
T Consensus 161 SiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---------qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA---------QISTLNPDRKVRGFVF 230 (558)
T ss_pred eccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccC---------cccccCcccEEEEEEe
Confidence 888889999998642 1110 011222345667888887764 3667779999999987
Q ss_pred c
Q 044557 357 S 357 (362)
Q Consensus 357 ~ 357 (362)
.
T Consensus 231 K 231 (558)
T KOG0882|consen 231 K 231 (558)
T ss_pred c
Confidence 4
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.08 E-value=0.0018 Score=54.85 Aligned_cols=184 Identities=16% Similarity=0.142 Sum_probs=101.7
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee-ehhhhcccc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL-VDVLERHNS 231 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~-~~~~~~h~~ 231 (362)
++..+++++.++.|..||..+++.+-...... .+.......++.++.++.|+.+..+|..+++...+. ........
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~- 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG- 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSS--CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc--cccceeeecccccccccceeeeEecccCCcceeeeeccccccccc-
Confidence 46677777899999999999998766554321 111112334566777888899999998888754432 11101111
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce----------e-EEEEEeCCeEEEeeCCCc-EE
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS----------I-LCMAVVSDLVCSGSADKT-IR 299 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~s~s~D~~-i~ 299 (362)
.........++..++.+..++.|..+|..+++. +......... + ..+.+..+.+..++.++. +.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL----LWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVA 187 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEE----EEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcE----EEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEE
Confidence 112223333488888898899999999886542 1122221211 1 122233446666666664 55
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+ +..... .+.... ...+..+ ... .+ ..|+.++.|+.+..||+..
T Consensus 188 ~-d~~tg~--~~w~~~--~~~~~~~-~~~--------~~-~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 188 V-DLATGE--KLWSKP--ISGIYSL-PSV--------DG-GTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp E-ETTTTE--EEEEEC--SS-ECEC-EEC--------CC-TEEEEEETTTEEEEEETTT
T ss_pred E-ECCCCC--EEEEec--CCCccCC-cee--------eC-CEEEEEeCCCEEEEEECCC
Confidence 5 754322 222221 1112211 111 12 2455666899999999863
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=9.4e-05 Score=69.99 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=99.0
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.+.+.|++++ +++|+-|+-+|.|++.+....- .+. ..|... .-+|. ++||+.||+|.|-.+.+.....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccc-cccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3556777776 5789999999999999876432 111 134322 33454 8999999999999887765432
Q ss_pred eeehhhhccccceeEEEEecC-----CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC
Q 044557 221 SLVDVLERHNSGINALALSCD-----GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD 295 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~-----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D 295 (362)
+. ....++.+|+++|+ .+++++||.-| +.++...--...... .+..-.+.|.++.|-++++|=++.+
T Consensus 108 ~~-----df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~g~lIAWand~ 179 (846)
T KOG2066|consen 108 QY-----DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWRGNLIAWANDD 179 (846)
T ss_pred eE-----ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEecCcEEEEecCC
Confidence 22 23568999999997 57899999998 878764321111111 2333457899999999988877776
Q ss_pred CcEEEeeCCC
Q 044557 296 KTIRIWRGID 305 (362)
Q Consensus 296 ~~i~~W~~~~ 305 (362)
| |++||...
T Consensus 180 G-v~vyd~~~ 188 (846)
T KOG2066|consen 180 G-VKVYDTPT 188 (846)
T ss_pred C-cEEEeccc
Confidence 5 89999543
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00066 Score=64.49 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=89.9
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC------CcEEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD------GDVYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~------~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+|.+++|||.||+|.|-.+-+.+...++. ...++.+|+++|+ +++++|+.-| +.++...=-....+. .+
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l 156 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VL 156 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--ee
Confidence 59999999999999999887776555443 3568999999997 3589999888 777642211111111 23
Q ss_pred hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee------EEEEEeCC-eEEEeeCCCcEE
Q 044557 227 ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI------LCMAVVSD-LVCSGSADKTIR 299 (362)
Q Consensus 227 ~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v------~~~~~~~~-~~~s~s~D~~i~ 299 (362)
..-.++|.++.|. |.++|=++.+| |++||..... .+..++-....+ ..+.|.++ .++-|-.| +|+
T Consensus 157 ~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~----~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~ 228 (846)
T KOG2066|consen 157 SEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQ----RLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVK 228 (846)
T ss_pred ecCccceEEEEec--CcEEEEecCCC-cEEEeccccc----eeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEE
Confidence 4456789999995 67777777666 8999987533 122222111222 23455444 56666555 677
Q ss_pred EeeCC
Q 044557 300 IWRGI 304 (362)
Q Consensus 300 ~W~~~ 304 (362)
+.++.
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 77754
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.03 E-value=0.0052 Score=56.60 Aligned_cols=234 Identities=12% Similarity=0.087 Sum_probs=122.7
Q ss_pred ecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeec--ceeEEEEEcCceeEEEecCCcEEEEecCCCCCCccc
Q 044557 27 LAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK--GAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 27 ~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~ 104 (362)
+.+..++.++.++.+.-+|.++.+..+............... .....+...++.++.++.++.+..+|.++++..-+.
T Consensus 67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 346677788888998888887654332222111000000000 001123455678888999999999998776532111
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccC
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH 184 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h 184 (362)
.. + . . ....++ + .+..++.++.++.|.-+|.++++.+-......
T Consensus 147 ~~-----~--~-~----------------------~~ssP~----v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 147 KV-----A--G-E----------------------ALSRPV----V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred cC-----C--C-c----------------------eecCCE----E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCC
Confidence 00 0 0 0 000111 1 13345567778999999999988765443211
Q ss_pred ccc-E---EEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhh--ccc-cceeEEEEec--CCCEEEEEcCCCcEE
Q 044557 185 DDA-I---NAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE--RHN-SGINALALSC--DGSVLYSGACDRSII 255 (362)
Q Consensus 185 ~~~-v---~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~h~-~~v~~i~~s~--~~~~l~s~~~d~~i~ 255 (362)
... . .+-.. .++.++.++.+|.+.-+|..+++...+...... .+. .....+.-+| .+..++.++.++.+.
T Consensus 191 ~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ 269 (394)
T PRK11138 191 PSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLV 269 (394)
T ss_pred CcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEE
Confidence 000 0 00011 134577778889998888887764322110000 000 0000111122 356777888899999
Q ss_pred EEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeC
Q 044557 256 VWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
.+|..+++.... ..+ .....+...++.+..++.|+.+...+.
T Consensus 270 ald~~tG~~~W~--~~~----~~~~~~~~~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 270 ALDLRSGQIVWK--REY----GSVNDFAVDGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred EEECCCCCEEEe--ecC----CCccCcEEECCEEEEEcCCCeEEEEEC
Confidence 999886542211 111 112233455667777788888888775
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.03 E-value=0.0049 Score=52.23 Aligned_cols=185 Identities=16% Similarity=0.153 Sum_probs=101.8
Q ss_pred cCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCE
Q 044557 77 LADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL 156 (362)
Q Consensus 77 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 156 (362)
.++.+++++.++.|..||..+++.... ..++ +.+.... ..++..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~-----~~~~------------------------------~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWR-----FDLP------------------------------GPISGAP-VVDGGR 78 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEE-----EECS------------------------------SCGGSGE-EEETTE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE-----eecc------------------------------cccccee-eecccc
Confidence 566788889999999999876542100 0000 0000001 123445
Q ss_pred EEEEECCCcEEEEECCCceEEEeeeccCcc-----cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcccc
Q 044557 157 LYSVSWDRTIKIWRTSDFKCLESITNAHDD-----AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS 231 (362)
Q Consensus 157 l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~-----~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~ 231 (362)
++.++.|+.|..+|..+++.+-........ ......+. ++.++.+..++.|..+|..+++...........-..
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 666678889999999999876653211110 11112222 445778888999999999988643322111100001
Q ss_pred ------ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEE-EEEeCCeEEEeeCCCcEEEeeCC
Q 044557 232 ------GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC-MAVVSDLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 232 ------~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~s~s~D~~i~~W~~~ 304 (362)
.+..-.+..++ .++.++.++.+..+|+.+++ .. . ... ...+.. ....++.++.++.|+.+..||..
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~--~~-w-~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE--KL-W-SKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE--EE-E-EEC--SS-ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC--EE-E-Eec--CCCccCCceeeCCEEEEEeCCCEEEEEECC
Confidence 11122222244 88888888864444887644 11 1 112 112223 44556777777799999999964
Q ss_pred C
Q 044557 305 D 305 (362)
Q Consensus 305 ~ 305 (362)
.
T Consensus 231 t 231 (238)
T PF13360_consen 231 T 231 (238)
T ss_dssp T
T ss_pred C
Confidence 3
No 300
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.02 E-value=5.8e-05 Score=69.23 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=78.7
Q ss_pred cCceeEEEEec-CCCEEEEE----ECCCc----EEEEECCCce--EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEE
Q 044557 142 VDAVSALALTK-DETLLYSV----SWDRT----IKIWRTSDFK--CLESITNAHDDAINAVALSDDGD-VYTGSADKKIK 209 (362)
Q Consensus 142 ~~~v~~~~~~~-~~~~l~s~----s~d~~----i~iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~ 209 (362)
.....++.|+- +...+.+. +.+|. -.+|++...+ ++..........|.+++++|+.. ++.|+.||.|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 34456666664 33334432 23443 3466665443 23333345677899999999876 89999999999
Q ss_pred EEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCC
Q 044557 210 VWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEED 262 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~ 262 (362)
+||...+... . ....-.++.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 285 LyD~~~~~t~--~----~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTL--L----AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeee--e----eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9998654211 1 123445788999999999999999999999998643
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.96 E-value=0.00018 Score=69.14 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=100.7
Q ss_pred eEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE
Q 044557 71 VKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL 150 (362)
Q Consensus 71 v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 150 (362)
+.-|.-++..++.|...|+|.+-|.++.+.. .++..|++.+..+..
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~i----------------------------------ht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFETI----------------------------------HTFDAHSGSISDFDV 225 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCcCcee----------------------------------eeeeccccceeeeec
Confidence 4444445566889999999999887765432 233457777766544
Q ss_pred ecCCCEEEEEEC---------CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCc
Q 044557 151 TKDETLLYSVSW---------DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 151 ~~~~~~l~s~s~---------d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~ 219 (362)
.|+.|++||. |..|+|||++..+.+.-+. -+.++ .-+.|.|.- +++.++..|...+-|..+....
T Consensus 226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred --cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc-cccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 5778888874 5668999998876655443 23332 446677764 4788888898888874332221
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
..-..........+..+++|+++..++.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 111111122234589999999999999999999999997
No 302
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.92 E-value=0.0037 Score=52.61 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=29.9
Q ss_pred cccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
....|..|.+||||+.|++...+|.|.+|++.+
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 356799999999999999999999999999864
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.91 E-value=0.0078 Score=60.15 Aligned_cols=162 Identities=18% Similarity=0.273 Sum_probs=92.7
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECC----CceEE-------------------Eeee-----------ccCcc-
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTS----DFKCL-------------------ESIT-----------NAHDD- 186 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~----~~~~~-------------------~~~~-----------~~h~~- 186 (362)
...|.+++|+||+..++-.+.++++.+-... ..+.+ ..+. ..+..
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 3578999999999999988888887665321 00011 0000 00110
Q ss_pred --------cEEEEEEcCCCcEEEE-----eCC-CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE---c
Q 044557 187 --------AINAVALSDDGDVYTG-----SAD-KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG---A 249 (362)
Q Consensus 187 --------~v~~v~~~~~~~~~s~-----~~d-g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~---~ 249 (362)
.-.+|+|-.||++++. -.+ ++|++||.+ +.....- ..-..--.+++|-|.|..+++- .
T Consensus 189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s----e~~~~l~~~LsWkPsgs~iA~iq~~~ 263 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS----EPVEGLQHSLSWKPSGSLIAAIQCKT 263 (1265)
T ss_pred ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc----CcccccccceeecCCCCeEeeeeecC
Confidence 1135889999975543 345 899999987 3211110 0111223578999999998876 4
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEE---eeCCCcEEEeeCCCCcee
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCS---GSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s---~s~D~~i~~W~~~~~~~~ 309 (362)
.|+.|.+|....-+.....+ .++.....|..++|.. +.++. ..+...|++|-..+..+.
T Consensus 264 sd~~IvffErNGL~hg~f~l-~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 264 SDSDIVFFERNGLRHGEFVL-PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred CCCcEEEEecCCcccccccc-CCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence 56679999764322221111 1222233477888853 45555 445555999975444443
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.91 E-value=0.011 Score=50.45 Aligned_cols=190 Identities=18% Similarity=0.113 Sum_probs=108.3
Q ss_pred EEEEec-CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc-CCCcEEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 147 ALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS-DDGDVYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 147 ~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
+..|.+ ++.++++--..+.|..|+..+++... +... ....+++. +++.++.+..++. .++|..+++.. .+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~---~~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~-~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP---GPNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVT-VLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS---SEEEEEEECTTSEEEEEETTCE-EEEETTTTEEE-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC---CCceEEEEccCCEEEEEEcCce-EEEecCCCcEE-EEee
Confidence 466787 66677776678999999998876533 2211 26677777 7888888777655 45588776322 2222
Q ss_pred hh-hc-cccceeEEEEecCCCEEEEEcCC--------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEE
Q 044557 225 VL-ER-HNSGINALALSCDGSVLYSGACD--------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCS 291 (362)
Q Consensus 225 ~~-~~-h~~~v~~i~~s~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s 291 (362)
.. .. .....+.+++.|+|...++.... |.|..++.. .....+ .........++++++ ++++
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~---~~~~~~---~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD---GKVTVV---ADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT---SEEEEE---EEEESSEEEEEEETTSSEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC---CeEEEE---ecCcccccceEECCcchheeec
Confidence 11 12 34678899999999977766544 345555544 222221 112333467778764 4567
Q ss_pred eeCCCcEEEeeCCCCce-----eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 292 GSADKTIRIWRGIDRNY-----TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~-----~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
-+..+.|..++...... ..+..+.+-....-.+++..+ +++.++.-..+.|.+++-.
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~---------G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD---------GNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT---------S-EEEEEETTTEEEEEETT
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC---------CCEEEEEcCCCEEEEECCC
Confidence 77888888887532222 112222222223666766433 3445444445677777654
No 305
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00015 Score=67.69 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=84.2
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcce-e
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHS-L 222 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~-~ 222 (362)
+.--+++..+++++.|+.-|.+.+|+-..++....-..+-.+.+..+.++++.+ +++|+..|.|.++.+....+... .
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 333445667899999999999999997766544322222334455666788777 56788889999998766432211 1
Q ss_pred -ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 223 -VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 223 -~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
...-+.|...|+++.|++|++.+++|..-|.|.+-.+..
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 122234788999999999999999999999998887765
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.83 E-value=0.015 Score=49.64 Aligned_cols=172 Identities=19% Similarity=0.151 Sum_probs=100.4
Q ss_pred eeEEEEe-cCCCEEEEEECCCcEEEEECCCceEEEeeec---c-CcccEEEEEEcCCCcEEEEeCC---------CeEEE
Q 044557 145 VSALALT-KDETLLYSVSWDRTIKIWRTSDFKCLESITN---A-HDDAINAVALSDDGDVYTGSAD---------KKIKV 210 (362)
Q Consensus 145 v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~-h~~~v~~v~~~~~~~~~s~~~d---------g~i~i 210 (362)
...+++. ++++ |+.+.. +.+.++|..+++....... . .....+.+++.|+|.++.+... |.|..
T Consensus 42 ~~G~~~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSE-EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCE-EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 5667777 6655 444554 4555669888764333221 1 2346789999999986654322 45666
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcE---EEEEeecCccceeEEEEEeC
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNI---LVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~---~~~~~~~~h~~~v~~~~~~~ 286 (362)
++.. +. ..... ..-...+.|+|+||++.|+ +-+..+.|..|++....... .....+....+..-.+++..
T Consensus 120 ~~~~-~~-~~~~~----~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~ 193 (246)
T PF08450_consen 120 IDPD-GK-VTVVA----DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS 193 (246)
T ss_dssp EETT-SE-EEEEE----EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT
T ss_pred ECCC-Ce-EEEEe----cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC
Confidence 6654 22 11111 1233467899999999776 66778889999986544312 22223333333455677754
Q ss_pred --CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 287 --DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 287 --~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
++.++.-..+.|.+++.. ++.+..+.--...+++++|.
T Consensus 194 ~G~l~va~~~~~~I~~~~p~---G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 194 DGNLWVADWGGGRIVVFDPD---GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TS-EEEEEETTTEEEEEETT---SCEEEEEE-SSSSEEEEEEE
T ss_pred CCCEEEEEcCCCEEEEECCC---ccEEEEEcCCCCCEEEEEEE
Confidence 466666677889999843 44455444334478999984
No 307
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.73 E-value=0.017 Score=53.48 Aligned_cols=112 Identities=12% Similarity=0.037 Sum_probs=67.4
Q ss_pred ceeEEEEecCCCE-EEEEECC---CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCC--CeEEEEeCCC
Q 044557 144 AVSALALTKDETL-LYSVSWD---RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSAD--KKIKVWRRSP 215 (362)
Q Consensus 144 ~v~~~~~~~~~~~-l~s~s~d---~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~d--g~i~iw~~~~ 215 (362)
....-.|+||++. ++..+.+ ..|.++|+.+++... +.. ..+......|+|||+ + ++.+.+ ..|.++++.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-Eec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 5567889999984 5544433 468888998876533 221 334455677999996 4 344434 4677778766
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEc-CCC--cEEEEeccCC
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDR--SIIVWEKEED 262 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~--~i~~wd~~~~ 262 (362)
+.. ..+ ..+........|+|||+.|+-.+ ..+ .|.+.|+..+
T Consensus 267 g~~-~~L----T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 267 KTL-TQI----TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CcE-EEc----ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 532 122 12222233457999998776554 334 4666676643
No 308
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00075 Score=61.47 Aligned_cols=109 Identities=13% Similarity=0.246 Sum_probs=77.5
Q ss_pred cCceeEEEEecCCCEEEEEE--CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-E---EeCCCeEEEEeCCC
Q 044557 142 VDAVSALALTKDETLLYSVS--WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-T---GSADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s---~~~dg~i~iw~~~~ 215 (362)
.++|-++.|+|+++-|+++- .=..+.|+|++.. .+..+ -+++-+++-|+|.|+++ . |..-|.|.+||+.+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 57899999999998777653 4468999998753 33323 35677889999999843 3 34568999999987
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC------CCcEEEEecc
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC------DRSIIVWEKE 260 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~------d~~i~~wd~~ 260 (362)
.+. +..+.. ..-+-..|+|||++++++.. |+-++||+..
T Consensus 346 ~K~----i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 346 RKL----IAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hhh----cccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 432 222221 22355789999999998865 5778899864
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.72 E-value=0.00027 Score=65.05 Aligned_cols=74 Identities=18% Similarity=0.119 Sum_probs=59.5
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~ 216 (362)
.....+.|++++|+...|+.|+.||.|.+||...+.... . ...-.+..++|+|+|. +++|+.-|.+.+||..-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--A-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee--e-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 456789999999999999999999999999987664322 2 2334568899999998 667888899999998643
No 310
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.68 E-value=0.0054 Score=44.39 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=64.1
Q ss_pred eeEEEEe---cCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcc
Q 044557 145 VSALALT---KDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 145 v~~~~~~---~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
|++|++. .|| +.|++||.|..||+|+-. +.+..+. ..+.|.+++-...++++.+-.+|+|-+|+..... .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl--W 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL--W 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEEEcCCCEEEEEecCCEEEEEeCccee--e
Confidence 3455543 343 579999999999999744 4555554 3567888888878889999999999999753211 1
Q ss_pred eeehhhhccccceeEEEEe-c--CC-CEEEEEcCCCcE
Q 044557 221 SLVDVLERHNSGINALALS-C--DG-SVLYSGACDRSI 254 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s-~--~~-~~l~s~~~d~~i 254 (362)
.. + .+..+.++.+. . || ..|++|=.+|.|
T Consensus 76 Ri----K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 76 RI----K-SKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred ee----c-cCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 11 1 12235555433 2 33 367777777765
No 311
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.54 E-value=0.027 Score=50.28 Aligned_cols=178 Identities=17% Similarity=0.257 Sum_probs=106.7
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEE---cCC----Cc-EEEEeC----------CCeEEEEeCCCC-C--Cccee
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVAL---SDD----GD-VYTGSA----------DKKIKVWRRSPG-N--KKHSL 222 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~---~~~----~~-~~s~~~----------dg~i~iw~~~~~-~--~~~~~ 222 (362)
..|++.|..+++.+..+.......+.+++. ..+ .. ++.|+. .|.|.++++... . ....+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 367888888887776655444455665553 322 22 444432 288999998773 1 11122
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEee
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~ 302 (362)
... ...+++|++++-- ++. |+.+. .+.|.+|++...+ .+.....+..+. .+.++...+++++.|..-+.+.++.
T Consensus 82 i~~-~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~-~l~~~~~~~~~~-~i~sl~~~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK-TLLKKAFYDSPF-YITSLSVFKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEE-EEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS-SEEEEEEE-BSS-SEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEE-EeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc-cchhhheecceE-EEEEEeccccEEEEEEcccCEEEEE
Confidence 221 2346788888755 444 44333 4789999998654 344444444333 6788888899999999999999885
Q ss_pred CCC--CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GID--RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~--~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
... .....++.- .....++++.|.++++ .++.+..+|.+.++..+
T Consensus 156 ~~~~~~~l~~va~d-~~~~~v~~~~~l~d~~---------~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 156 YDEENNKLILVARD-YQPRWVTAAEFLVDED---------TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EETTTE-EEEEEEE-SS-BEEEEEEEE-SSS---------EEEEEETTSEEEEEEE-
T ss_pred EEccCCEEEEEEec-CCCccEEEEEEecCCc---------EEEEEcCCCeEEEEEEC
Confidence 432 223333332 2355678887764421 47789999999999886
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.54 E-value=0.036 Score=55.68 Aligned_cols=113 Identities=13% Similarity=0.277 Sum_probs=71.3
Q ss_pred eEEEEecCCCEEEEE-----ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEE----eCCCeEEEEeCCCC
Q 044557 146 SALALTKDETLLYSV-----SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTG----SADKKIKVWRRSPG 216 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~-----s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~----~~dg~i~iw~~~~~ 216 (362)
+.+.|-.||.++|+. ..-+.|++||-+ +. +.........--.+++|-|.|.++++ +.|+.|.+|... |
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-G 275 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-G 275 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-C
Confidence 568899999999883 223799999977 32 22222222333457899999874432 456689998653 2
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEE---EcCCCcEEEEeccC
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYS---GACDRSIIVWEKEE 261 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s---~~~d~~i~~wd~~~ 261 (362)
.....+.-.......+|..++|+.++..|+. ......|++|-..+
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 2111111112222334899999999999987 55555599998754
No 313
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.53 E-value=0.012 Score=52.93 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=98.0
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC-eEEEEeCCCCCCcceeehhhhccc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADK-KIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
+|.+++..|. |...|.+...+-.++ .+|.+.|.-..+.-++. ++.|..|| .+-|||..+++.. .+...-
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-----r~e~~l 401 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-----RIEKDL 401 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-----EeeCCc
Confidence 5778888775 666666655554433 46777788888876654 88899999 9999999876522 222345
Q ss_pred cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee----CCCcEEEeeCC
Q 044557 231 SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS----ADKTIRIWRGI 304 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s----~D~~i~~W~~~ 304 (362)
+.|.++..+|+|+.++.+.....+.+.|+++++. +.+. +..-+-|+.+.++++ .+|=+- .-..|+++|+.
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv--~~id--kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV--RLID--KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe--eEec--ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 6789999999999999999999999999987542 2222 234456788888765 455333 34578999865
Q ss_pred C
Q 044557 305 D 305 (362)
Q Consensus 305 ~ 305 (362)
.
T Consensus 478 ~ 478 (668)
T COG4946 478 G 478 (668)
T ss_pred C
Confidence 4
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0063 Score=53.55 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=64.0
Q ss_pred eecCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCC
Q 044557 140 HHVDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~ 216 (362)
.|...|..++|+|..+ ++..++-+++|+|.|+++..++.... .+ ..+++++|.-+.. +++|-.+|.|.+||+...
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 4566799999999887 78889999999999999988877665 45 6899999986653 889999999999999765
Q ss_pred C
Q 044557 217 N 217 (362)
Q Consensus 217 ~ 217 (362)
+
T Consensus 269 ~ 269 (463)
T KOG1645|consen 269 E 269 (463)
T ss_pred C
Confidence 4
No 315
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.49 E-value=0.00021 Score=40.47 Aligned_cols=37 Identities=43% Similarity=0.767 Sum_probs=32.5
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEee
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWD 45 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd 45 (362)
.+++.++.+|...|.++.+. +.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45678888999999999995 56999999999999996
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.46 E-value=0.0052 Score=59.51 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=96.5
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeC---------CCeEEEEeCCCCCCcce
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSA---------DKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~---------dg~i~iw~~~~~~~~~~ 221 (362)
-.+++++.+|...|+|.+=|.++.+.++++. +|++.+.++... ++.|++++. |.-|+|||+......
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral-- 259 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL-- 259 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCceeeeee-ccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhcc--
Confidence 3567899999999999999999999999986 899988776655 334667653 667899998764322
Q ss_pred eehhhhccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcE
Q 044557 222 LVDVLERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTI 298 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i 298 (362)
..+.-+-.+ .-+.|.|. ...++.++..|...+-|..+-.+...-+....-....+..++++ ++.++-|-.+|.|
T Consensus 260 --~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 260 --SPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred --CCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 111122222 44567774 45788888899998888322111111111111122336666654 5699999999999
Q ss_pred EEee
Q 044557 299 RIWR 302 (362)
Q Consensus 299 ~~W~ 302 (362)
.+|.
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9996
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.43 E-value=5.7e-05 Score=69.71 Aligned_cols=198 Identities=18% Similarity=0.243 Sum_probs=119.3
Q ss_pred eeEEEEec--CCCEEEEEECCCcEEEEECCCceEE-EeeeccCcccEEEEEEcCCC-c-EEEE----eCCCeEEEEeCCC
Q 044557 145 VSALALTK--DETLLYSVSWDRTIKIWRTSDFKCL-ESITNAHDDAINAVALSDDG-D-VYTG----SADKKIKVWRRSP 215 (362)
Q Consensus 145 v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~h~~~v~~v~~~~~~-~-~~s~----~~dg~i~iw~~~~ 215 (362)
+.|++..- +..+++.|..+|.|-+-.++...-. ..+..+|....++++|++-. . |++| -.|-.++|||..+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 45555433 3357888999999999887654322 34455677788999998753 2 4444 2355799999887
Q ss_pred CCCcceeehhhhc-cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEE---EeCCeEEE
Q 044557 216 GNKKHSLVDVLER-HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMA---VVSDLVCS 291 (362)
Q Consensus 216 ~~~~~~~~~~~~~-h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~~~s 291 (362)
.-....-...+.. --....+++|-.+.+.+.+|...+.+.++|++........+ .++.+.-+. |.++++++
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-----nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-----NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-----hhhhcccceecCCCCCceec
Confidence 6211111111111 23355688888888999999999999999987321111011 122232222 35678887
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCC----cEEEEEeeecCCccCCCCCceEEEecCCCC-cEEEEec
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRG----PVKCLAAAIDNDRCDSSDTSYLVCSGSLDC-DIKVWQI 356 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~----~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~-~i~~W~~ 356 (362)
-+ |+.|-+||...+--.++.++....+ .+..+++.|.+. | ++++-+.|. +|+++++
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt-------g-lla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT-------G-LLAVLSRDSITIRLYDI 274 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc-------c-hhhhhccCcceEEEecc
Confidence 77 8999999932111122333332222 388899987642 2 455665554 5888887
No 318
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.37 E-value=0.031 Score=50.84 Aligned_cols=198 Identities=15% Similarity=0.169 Sum_probs=113.6
Q ss_pred ceeEEEEecCCCEEEEEECCCc---------------EEEEECCCceEEEeeeccCccc--EE-EEEEcCCCcEEEEeCC
Q 044557 144 AVSALALTKDETLLYSVSWDRT---------------IKIWRTSDFKCLESITNAHDDA--IN-AVALSDDGDVYTGSAD 205 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~---------------i~iwd~~~~~~~~~~~~~h~~~--v~-~v~~~~~~~~~s~~~d 205 (362)
.|..+.|+|++++|.+=+.... +.+||+.++..+..+... ..+ .+ -+.|+-+..+++---.
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~-~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGI-SQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecccc-CCcccccceeeeeecchhhhhhcc
Confidence 4567788999999988665544 999999999888776532 222 33 4667766543322233
Q ss_pred CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC--EEE-----EEcCCCcEEEEeccCCCCcEEEEEeecCccce
Q 044557 206 KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS--VLY-----SGACDRSIIVWEKEEDDGNILVVGALRGHTKS 278 (362)
Q Consensus 206 g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~-----s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~ 278 (362)
..+.|+++ +++........+ ....|...+|+|.+. .|+ ..+.++++++|.+..+. .....++-.-.+
T Consensus 152 ~sl~i~e~-t~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~lfk~~~- 225 (561)
T COG5354 152 SSLYIHEI-TDNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNLFKVSG- 225 (561)
T ss_pred CeEEEEec-CCccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeeeEeecc-
Confidence 46888886 443222122222 235688889999643 334 34678889999886322 222222211111
Q ss_pred eEEEEE--eCCeEEE-----------eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec
Q 044557 279 ILCMAV--VSDLVCS-----------GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 279 v~~~~~--~~~~~~s-----------~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 345 (362)
..+.| .+++++. --....+.|+++..+. +....+-.++|....|.|.+++ .-+++|
T Consensus 226 -~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p~S~~-------F~vi~g 294 (561)
T COG5354 226 -VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEPLSSR-------FAVISG 294 (561)
T ss_pred -cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecccCCc-------eeEEec
Confidence 01222 1222110 0123456677754333 2223356789999999887654 447777
Q ss_pred CCCCcEEEEecccC
Q 044557 346 SLDCDIKVWQISFP 359 (362)
Q Consensus 346 s~D~~i~~W~~~~~ 359 (362)
-.+..+-++|+...
T Consensus 295 ~~pa~~s~~~lr~N 308 (561)
T COG5354 295 YMPASVSVFDLRGN 308 (561)
T ss_pred ccccceeecccccc
Confidence 88888888887644
No 319
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.047 Score=52.36 Aligned_cols=187 Identities=12% Similarity=0.118 Sum_probs=110.3
Q ss_pred EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC---CC-c-EEEEeCCCeEEEEeCCCCCCcceeehhhhccc
Q 044557 156 LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD---DG-D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~---~~-~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
+||++.-.|.|.+||......+..+. .|.+++..++|-+ +. . +++-.....+.+|+..+|.+..+ .....
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk----~~ys~ 155 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK----YDYSH 155 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec----cccCC
Confidence 57777778999999998877666664 6788899999854 33 2 55666778999999998864322 22234
Q ss_pred cceeEEEEec-CCCEEEEEcCCCcEEEEeccCC---C---CcEEEEEeecC-------------ccc------ee---EE
Q 044557 231 SGINALALSC-DGSVLYSGACDRSIIVWEKEED---D---GNILVVGALRG-------------HTK------SI---LC 281 (362)
Q Consensus 231 ~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~---~---~~~~~~~~~~~-------------h~~------~v---~~ 281 (362)
....++.+.| |.+++..-+..|.+.+-+.... . .++++...... ++. .+ ..
T Consensus 156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~ 235 (1062)
T KOG1912|consen 156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ 235 (1062)
T ss_pred cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence 5567788888 6777777777787766654211 1 11111111000 000 01 12
Q ss_pred EEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 282 MAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 282 ~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
++|++. .++-..--+.+.++|.+- ..++...---.+.+.-+.+.|+..+ ..|...=.||.+-+|--
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~--~~~l~vvpier~~akfv~vlP~~~r-------d~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEY--ECCLAVVPIERGGAKFVDVLPDPRR-------DALFCLHSNGRLTIRVR 303 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchh--hceeEEEEeccCCcceeEeccCCCc-------ceEEEEecCCeEEEEEe
Confidence 233432 122223345677777432 2334443333445555666666543 35777888999999864
No 320
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.31 E-value=0.0008 Score=37.95 Aligned_cols=32 Identities=38% Similarity=0.538 Sum_probs=29.1
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
..|...|.++.+++++.++++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45778899999999999999999999999996
No 321
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.30 E-value=0.028 Score=40.73 Aligned_cols=103 Identities=20% Similarity=0.277 Sum_probs=65.3
Q ss_pred eeEEEEec---CC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCcEEEeeCCCCc
Q 044557 233 INALALSC---DG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 233 v~~i~~s~---~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~i~~W~~~~~~ 307 (362)
|+++++.. || ..|++|+.|..||+|+-++ .+..+. .+..|.++... +..++-+.++|+|-+|+...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCccee
Confidence 56666554 33 5899999999999997542 233333 35667777664 5689999999999999743332
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
+ ..+. +..+.++++..-. .++-..|++|=.+|.|-
T Consensus 75 W----RiKS-K~~~~~~~~~D~~-----gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 W----RIKS-KNQVTSMAFYDIN-----GDGVPELIVGWSNGKVE 109 (111)
T ss_pred e----eecc-CCCeEEEEEEcCC-----CCCceEEEEEecCCeEE
Confidence 2 2332 2236666654321 12334577887778764
No 322
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.23 E-value=0.01 Score=53.88 Aligned_cols=158 Identities=13% Similarity=0.154 Sum_probs=95.3
Q ss_pred CcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc----------
Q 044557 184 HDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS---------- 253 (362)
Q Consensus 184 h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~---------- 253 (362)
..-++..+++||.|.++....-..|.+|.-..... +.. -....|..+.|+|.+++|.+-+....
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~---l~~---~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK---LVR---FRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhh---eee---eecCCceecccCcccceeeeeccCCccChhhccCCc
Confidence 34578889999999966666666789997554431 211 12456899999999999998865544
Q ss_pred -----EEEEeccCCCCcEEEEEeecCccce-----eEEEEEeCCeEEEeeCCCcEEEeeCCCCce--eeeeEecCCCCcE
Q 044557 254 -----IIVWEKEEDDGNILVVGALRGHTKS-----ILCMAVVSDLVCSGSADKTIRIWRGIDRNY--TCLAVLEGHRGPV 321 (362)
Q Consensus 254 -----i~~wd~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~--~~~~~l~~h~~~v 321 (362)
+.+||..++. ++..+.+-..+ +..+..+..+.|=. ....++++++ ..+. ...+.|. ...|
T Consensus 105 ~~~n~~~vwd~~sg~----iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi 176 (561)
T COG5354 105 TSKNNVFVWDIASGM----IVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGI 176 (561)
T ss_pred cccCceeEEeccCce----eEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--ccce
Confidence 8889887643 34444444433 33333333343322 2245888874 2222 1223333 4568
Q ss_pred EEEEeeecCCccCCCCCceEEE--ecCCCCcEEEEecccC
Q 044557 322 KCLAAAIDNDRCDSSDTSYLVC--SGSLDCDIKVWQISFP 359 (362)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~--s~s~D~~i~~W~~~~~ 359 (362)
...+++|.+++ +.-.+++ ....++.+++|.+...
T Consensus 177 ~dFsisP~~n~----~~la~~tPEk~~kpa~~~i~sIp~~ 212 (561)
T COG5354 177 LDFSISPEGNH----DELAYWTPEKLNKPAMVRILSIPKN 212 (561)
T ss_pred eeEEecCCCCC----ceEEEEccccCCCCcEEEEEEccCC
Confidence 88888887643 1111111 2578899999998744
No 323
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.14 E-value=0.17 Score=45.08 Aligned_cols=180 Identities=13% Similarity=0.169 Sum_probs=98.3
Q ss_pred CcEEEEECCCc-----eEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 164 RTIKIWRTSDF-----KCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 164 ~~i~iwd~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
|.|.++++... +..........++|.+++-. ++.++ ++.++.|.+|++.... ++... ..+..++...+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv-~~~g~~l~v~~l~~~~---~l~~~-~~~~~~~~i~sl 135 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLV-VAVGNKLYVYDLDNSK---TLLKK-AFYDSPFYITSL 135 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEE-EEETTEEEEEEEETTS---SEEEE-EEE-BSSSEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEE-EeecCEEEEEEccCcc---cchhh-heecceEEEEEE
Confidence 88999998873 22221222356789998866 45544 4446899999987654 12111 112233333344
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCC--------C-c
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGID--------R-N 307 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~--------~-~ 307 (362)
...+.+++.|.....+.++........+..+.. ......++++.+- .+.++.+..+|.+.++.... . .
T Consensus 136 ~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~ 214 (321)
T PF03178_consen 136 SVFKNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPK 214 (321)
T ss_dssp EEETTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTB
T ss_pred eccccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccccc
Confidence 444669999999888888866543333444443 2335567777775 34899999999999997531 1 2
Q ss_pred eeeeeEecCCCCcEEEE---EeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 308 YTCLAVLEGHRGPVKCL---AAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~---~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
......+. ..+.|+++ .+.|. ...........++-++.+|.|-
T Consensus 215 L~~~~~f~-lg~~v~~~~~~~l~~~-~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 215 LERISSFH-LGDIVNSFRRGSLIPR-SGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp EEEEEEEE--SS-EEEEEE--SS---SSSS-TTEEEEEEEEETTS-EE
T ss_pred ceeEEEEE-CCCccceEEEEEeeec-CCCCcccccceEEEEecCCEEE
Confidence 33333443 34567776 43332 1000000123355566788876
No 324
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.029 Score=53.68 Aligned_cols=147 Identities=13% Similarity=0.205 Sum_probs=99.1
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-----------c--EEEEeCCCeEEEE
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-----------D--VYTGSADKKIKVW 211 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-----------~--~~s~~~dg~i~iw 211 (362)
-.++.|+|.|- +|-|+ -..|.+-|..+.+.++.+. .|...|+.|.|.|.. . ++++.-.|.|.+|
T Consensus 18 ~~A~Dw~~~GL-iAygs-hslV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 18 RNAADWSPSGL-IAYGS-HSLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccccCccce-EEEec-CceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 45677888773 44343 5788899999988888775 688999999997631 2 4567778999999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEec---CC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSC---DG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-- 285 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~---~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-- 285 (362)
|...+. ..-.+..|..++..+.|-+ +. ..|+.-....++.+|+..+++..+ ..........|+.++
T Consensus 95 d~~~~s----~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W----k~~ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 95 DFVLAS----VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW----KYDYSHEILSCFRVDPF 166 (1062)
T ss_pred Eehhhh----hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee----ccccCCcceeeeeeCCC
Confidence 987654 2335566888999999876 33 467777778899999988765321 222222334556654
Q ss_pred -CCeEEEeeCCCcEEEee
Q 044557 286 -SDLVCSGSADKTIRIWR 302 (362)
Q Consensus 286 -~~~~~s~s~D~~i~~W~ 302 (362)
+..++.-+..|.+-+-+
T Consensus 167 d~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred CcceEEEEccCceEEEEe
Confidence 34454445556665554
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.04 E-value=0.19 Score=43.72 Aligned_cols=152 Identities=18% Similarity=0.324 Sum_probs=87.2
Q ss_pred EEEecCCCEEEEEECC-----CcEEEEECC-CceEEEeeeccCcccEEEEEEcCCCc-EEEEe-------CCCeEEE---
Q 044557 148 LALTKDETLLYSVSWD-----RTIKIWRTS-DFKCLESITNAHDDAINAVALSDDGD-VYTGS-------ADKKIKV--- 210 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d-----~~i~iwd~~-~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-------~dg~i~i--- 210 (362)
-.|++||++|++.-.| |.|-|||.. +.+.+.++. .|.-....+.+.|+|+ |+.+. ..|..++
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 4689999999986544 789999998 667777665 3444455678899994 54431 1233333
Q ss_pred --------EeCCCCCCcceeehhh--hccccceeEEEEecCCCEEEEEcCCCc-------EEEEeccCCCCcEEEEEe--
Q 044557 211 --------WRRSPGNKKHSLVDVL--ERHNSGINALALSCDGSVLYSGACDRS-------IIVWEKEEDDGNILVVGA-- 271 (362)
Q Consensus 211 --------w~~~~~~~~~~~~~~~--~~h~~~v~~i~~s~~~~~l~s~~~d~~-------i~~wd~~~~~~~~~~~~~-- 271 (362)
-|..++....+. .+ ..|+..+.-+++.++|..++..-..|. +-+++... .+..+..
T Consensus 135 tM~psL~~ld~~sG~ll~q~--~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~ 209 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQV--ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPE 209 (305)
T ss_pred hcCCceEEEecCCCceeeee--ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCCh
Confidence 233333321111 12 347778888999988877665544332 12222111 1111110
Q ss_pred --ecCccceeEEEEEeCC--eE-EEeeCCCcEEEeeCCC
Q 044557 272 --LRGHTKSILCMAVVSD--LV-CSGSADKTIRIWRGID 305 (362)
Q Consensus 272 --~~~h~~~v~~~~~~~~--~~-~s~s~D~~i~~W~~~~ 305 (362)
+..-.+.+-+++++.+ .+ +|+=.-+.+-+||...
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 1112356778888754 44 5555678899998543
No 326
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.99 E-value=0.21 Score=43.47 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=61.4
Q ss_pred EEEEecC-CCEEEEEECCC-cEEEEECCCceEEEeeeccCcc-cEEEEEEcCCCc-EEE-----EeCCCeEEEEeCCCCC
Q 044557 147 ALALTKD-ETLLYSVSWDR-TIKIWRTSDFKCLESITNAHDD-AINAVALSDDGD-VYT-----GSADKKIKVWRRSPGN 217 (362)
Q Consensus 147 ~~~~~~~-~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~h~~-~v~~v~~~~~~~-~~s-----~~~dg~i~iw~~~~~~ 217 (362)
.++.+|. ...++.+-.-| ...+||..+++....+.....- ..-.-+|+++|+ |++ .+..|.|-|||...+
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~- 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG- 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC-
Confidence 4555663 34455555554 4668898888776654321110 122357999998 444 244689999999733
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
...+..+..|.-.-..+.+.|||+.|+.+
T Consensus 88 --~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 88 --YRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred --cEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 23344455555566778899999888877
No 327
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.96 E-value=0.31 Score=45.24 Aligned_cols=93 Identities=10% Similarity=0.013 Sum_probs=54.6
Q ss_pred EEEecCCCEEEEEEC-CC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCC--------CeEEEEeCC
Q 044557 148 LALTKDETLLYSVSW-DR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSAD--------KKIKVWRRS 214 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~d--------g~i~iw~~~ 214 (362)
..|+|||+.|+-.+. .+ .|.+.|+.+++..+....+. . ...|+|+|+ ++ +.... ..|.+.|++
T Consensus 282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 469999987665553 33 57777887776533222111 1 247999997 43 33222 367777887
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcC
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~ 250 (362)
++.. ..+.. . .......|+|||+.|+....
T Consensus 358 ~g~~-~~LT~----~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 358 SDYI-RRLTA----N-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CCCe-EECCC----C-CCcCCeEECCCCCEEEEEEc
Confidence 6642 22221 1 12235789999998776554
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0032 Score=55.31 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=68.8
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG- 242 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~- 242 (362)
+++.+..+.+..+ +...|...|.+++|+|... +..++.+++|+|.|+++...... ...+ ..+.+++|.-|.
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss----y~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS----YIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh----eecc-CCceeeeeccCCc
Confidence 5555555555544 4456778899999999766 66789999999999987643322 2334 789999998765
Q ss_pred CEEEEEcCCCcEEEEeccCCCC
Q 044557 243 SVLYSGACDRSIIVWEKEEDDG 264 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~ 264 (362)
++|+.|-..|.|.+||++..++
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred ceeEEeccCceEEEEEccCCCc
Confidence 5677888899999999987554
No 329
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0066 Score=56.49 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=69.0
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEE-EEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcce
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN-AVALSDDGD-VYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~-~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
.+.-+.|+|.-.++|.+.++|.|-+..++ ++.+-++. -|...++ +++|.|||+ ++.|-.||+|++-|++++.....
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 35667899999999999999999999988 66665553 2555666 999999999 66788999999999998764333
Q ss_pred eehhhhccccceeEEEEec
Q 044557 222 LVDVLERHNSGINALALSC 240 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~ 240 (362)
. ...-..+|.++-|+|
T Consensus 100 ~---~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 F---LFSVETDISKGIWDR 115 (665)
T ss_pred c---ccccccchheeeccc
Confidence 1 112345677777753
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.88 E-value=0.35 Score=44.32 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=86.4
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec-------cCcccEEEEEEc-----CCCc----EEEEeC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN-------AHDDAINAVALS-----DDGD----VYTGSA 204 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------~h~~~v~~v~~~-----~~~~----~~s~~~ 204 (362)
..++|++++.+ |=-++|.|.++|.+.|.|++....+..-.. .....++++.|. .|+. ++.|..
T Consensus 85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 46899999986 556999999999999999998876654211 123457777775 3442 678899
Q ss_pred CCeEEEEeCCC-CCCcce--eehhhhccccceeEEE-EecC-----------------C---CEEEEEcCCCcEEEEecc
Q 044557 205 DKKIKVWRRSP-GNKKHS--LVDVLERHNSGINALA-LSCD-----------------G---SVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 205 dg~i~iw~~~~-~~~~~~--~~~~~~~h~~~v~~i~-~s~~-----------------~---~~l~s~~~d~~i~~wd~~ 260 (362)
.|.+.+|.+.. ...... .......+..+|..|. |..+ | ..++....+..+|++...
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 99999998753 221111 1122223556666554 3221 1 234444557789999876
Q ss_pred CCCCcEEEEEeecCccceeEEEEE-------eCCeEEEeeCCCcEEEeeC
Q 044557 261 EDDGNILVVGALRGHTKSILCMAV-------VSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 261 ~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~s~s~D~~i~~W~~ 303 (362)
+.+.. ...++ ....+..+.+ ....|+.-..||.|+++.+
T Consensus 244 ~~k~~---~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 244 KSKGA---HKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp ---EE---EEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred CCccc---ceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 54321 12222 1111222222 1236888889999999985
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.87 E-value=0.36 Score=44.24 Aligned_cols=208 Identities=13% Similarity=0.134 Sum_probs=108.9
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEE------------------------------------------Eeee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCL------------------------------------------ESIT 181 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~------------------------------------------~~~~ 181 (362)
.|+.+.|.++..-|++|...|.|-||.....+.. ..+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4678888888888999999999988864321000 0111
Q ss_pred ccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee-ehh---hhccccceeEEEEec-----CC---CEEEEEc
Q 044557 182 NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL-VDV---LERHNSGINALALSC-----DG---SVLYSGA 249 (362)
Q Consensus 182 ~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~-~~~---~~~h~~~v~~i~~s~-----~~---~~l~s~~ 249 (362)
+...++|++++.|.=|.++.|..+|.+.|.|++........ +.. -......|+++.|+- |+ -.|++|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 23467899999998888889999999999999754322210 011 111345678888862 33 3788999
Q ss_pred CCCcEEEEeccC-CCCcE--EEEEeecCccceeEEEEEe-C----------------------CeEEEeeCCCcEEEeeC
Q 044557 250 CDRSIIVWEKEE-DDGNI--LVVGALRGHTKSILCMAVV-S----------------------DLVCSGSADKTIRIWRG 303 (362)
Q Consensus 250 ~d~~i~~wd~~~-~~~~~--~~~~~~~~h~~~v~~~~~~-~----------------------~~~~s~s~D~~i~~W~~ 303 (362)
..|.+.+|.+.. ..+.+ ........+...|..+... . ..++....+..||+++.
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 999999998752 22211 1222222344555544421 0 12344445678999984
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.. .+..+......-....+.+.+-.. ...+..|+.--.||.|+++.++
T Consensus 243 ~~--~k~~~K~~~~~~~~~~~~vv~~~~----~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 243 PK--SKGAHKSFDDPFLCSSASVVPTIS----RNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp T-----EEEEE-SS-EEEEEEEEEEEE-----EEEEEEEEEEETTSEEEEEETT
T ss_pred CC--CcccceeeccccccceEEEEeecc----cCCceEEEEEECCCcEEEEECC
Confidence 32 233332222212223333432100 0123457777889999999874
No 332
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.84 E-value=0.072 Score=52.51 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=52.5
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRR 213 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~ 213 (362)
....|++-+.+| +||.|+.+|.||+||-- ++.-.+...+-..+|..|..+.||+.+.+..+..+.+++.
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 356788877776 68889999999999943 3333334445678999999999999777777778888875
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.80 E-value=0.0027 Score=61.02 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=77.5
Q ss_pred EEEecCCCEEEEEE----CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee
Q 044557 148 LALTKDETLLYSVS----WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 148 ~~~~~~~~~l~s~s----~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.+|+|...+||.++ ..|.|.||- +++++.+.+..+ --+.+++|+|... ++.|-..|.+.+|...+.+ .
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e----~ 93 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE----T 93 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc--eehhhhccChHHHHHhhccccceeEEEecCCce----e
Confidence 46778888877776 347888873 445443333211 1246799999886 6778889999999865532 2
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
-.....|+.+|.-+.||++|..++++..-|.+.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 22345699999999999999999999999999999754
No 334
>PHA02713 hypothetical protein; Provisional
Probab=96.79 E-value=0.089 Score=50.74 Aligned_cols=186 Identities=8% Similarity=0.081 Sum_probs=92.0
Q ss_pred CCCEEEEEECC------CcEEEEECCCceEEEeeeccC-cccEEEEEEcCCCc-EEEEeCCC-----eEEEEeCCCCCCc
Q 044557 153 DETLLYSVSWD------RTIKIWRTSDFKCLESITNAH-DDAINAVALSDDGD-VYTGSADK-----KIKVWRRSPGNKK 219 (362)
Q Consensus 153 ~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~h-~~~v~~v~~~~~~~-~~s~~~dg-----~i~iw~~~~~~~~ 219 (362)
++.+.+.||.+ ..+..||..+..... +.... ...-.+++.. +|+ ++.||.++ .+..||..+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~-- 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDK-- 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCe--
Confidence 56666777754 347778877654321 11111 1111122223 455 45666553 47889876542
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCC-----------------------cEEEEeccCCCCcEEEEEeecCcc
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDR-----------------------SIIVWEKEEDDGNILVVGALRGHT 276 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-----------------------~i~~wd~~~~~~~~~~~~~~~~h~ 276 (362)
......+.........+ .-+|+..+.||.++ .+..||..++. +..+..+....
T Consensus 379 W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~~r 454 (557)
T PHA02713 379 WKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWTGT 454 (557)
T ss_pred EEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCCCCccc
Confidence 11111111111111122 23678888888653 36677766432 22333332111
Q ss_pred ceeEEEEEeCCeEEEeeCC------CcEEEeeCCC-CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCC
Q 044557 277 KSILCMAVVSDLVCSGSAD------KTIRIWRGID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC 349 (362)
Q Consensus 277 ~~v~~~~~~~~~~~s~s~D------~~i~~W~~~~-~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~ 349 (362)
.........+.+.+.|+.+ ..+..||... ..+..+..+.........+++ ++++.+.||.|+
T Consensus 455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-----------~~~iyv~Gg~~~ 523 (557)
T PHA02713 455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-----------DNTIMMLHCYES 523 (557)
T ss_pred ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-----------CCEEEEEeeecc
Confidence 1111223344455666643 2467788655 467777666544444433333 236778898888
Q ss_pred --cEEEEecc
Q 044557 350 --DIKVWQIS 357 (362)
Q Consensus 350 --~i~~W~~~ 357 (362)
++..+|..
T Consensus 524 ~~~~e~yd~~ 533 (557)
T PHA02713 524 YMLQDTFNVY 533 (557)
T ss_pred eeehhhcCcc
Confidence 56666653
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.79 E-value=0.00056 Score=63.42 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=94.9
Q ss_pred eecCceeEEEEec-CCCEEEEEE----CCCcEEEEECCCc--eEEEee--eccCcccEEEEEEcCCCc-EEEEeCCCeEE
Q 044557 140 HHVDAVSALALTK-DETLLYSVS----WDRTIKIWRTSDF--KCLESI--TNAHDDAINAVALSDDGD-VYTGSADKKIK 209 (362)
Q Consensus 140 ~h~~~v~~~~~~~-~~~~l~s~s----~d~~i~iwd~~~~--~~~~~~--~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~ 209 (362)
+|....++++|++ |.++||+|= .|..+.|||+.++ .+.... .........+++|-.+.+ +++|...+.++
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 4566778888877 446676652 3457999999876 222221 111233456788876666 66888888999
Q ss_pred EEeCCCCCCcceeehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEec-cCCCCcEEE-EEeecCccceeEEEEEeC
Q 044557 210 VWRRSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEK-EEDDGNILV-VGALRGHTKSILCMAVVS 286 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~-~~~~~~~~~-~~~~~~h~~~v~~~~~~~ 286 (362)
++|+.... .....-....+..+.+.| .+.++++.. |+.|-+||. ..-+..++. +..-..-.+++..++|.+
T Consensus 180 ifdlRqs~-----~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 180 IFDLRQSL-----DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhhhhhhh-----hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 99986321 111111233566677888 677777666 999999993 221111110 000000123477888875
Q ss_pred C---eEEEeeCC-CcEEEeeC
Q 044557 287 D---LVCSGSAD-KTIRIWRG 303 (362)
Q Consensus 287 ~---~~~s~s~D-~~i~~W~~ 303 (362)
. .+++.+.| ++|++++.
T Consensus 254 trtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred CCcchhhhhccCcceEEEecc
Confidence 3 67777765 67889874
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=0.0025 Score=61.53 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=67.5
Q ss_pred eecCceeEEEEecCCCEEEEEE-CCC-cEEEEECCC-ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVS-WDR-TIKIWRTSD-FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s-~d~-~i~iwd~~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~ 215 (362)
.|..+|+-+.-+.+|..+.+.+ +.. ...+|++.+ +...+.+. .-.++.|+..-+ -+.|..-....+||+++
T Consensus 1141 cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1141 CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred ccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEeccc
Confidence 4666677777777777655443 333 567898764 33333333 234577876544 23344445788999999
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
..+..++....-+.+..-+...|+|+...++ .|| .+||.+.
T Consensus 1216 ~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1216 CSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred CcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeecc
Confidence 8766554332222333346778999888877 344 4788764
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.67 E-value=0.49 Score=43.73 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=37.9
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRS 214 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~ 214 (362)
.|+||+... +.+..+.-.+ +.+.++.|+.+..|+....||.+++||+.
T Consensus 62 ~I~iys~sG-~ll~~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSG-KLLSSIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCC-CEeEEEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 599998664 4455544333 78999999998889999999999999985
No 338
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.0019 Score=62.34 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=82.9
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCC-eEEEEeCCC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADK-KIKVWRRSP 215 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg-~i~iw~~~~ 215 (362)
..|....+|++|+.+.++|+.|+..|.|+++++.++....... .|..+|+-+.-+.+|. ++ +++... -..+|+..+
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 3466789999999999999999999999999999998777664 8999999998887885 33 333333 567898754
Q ss_pred CCCcceeehhhhccc-cceeEEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 216 GNKKHSLVDVLERHN-SGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~-~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
... . .|. ..-.++.|+..-+.-+.|..-....+||.++..
T Consensus 1177 ~~~---~-----~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1177 TGG---P-----RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred ccC---c-----cccccccceeehhhhHHHHHhcccccceEEEecccCc
Confidence 211 1 122 233567787654444445444567899998754
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.66 E-value=0.045 Score=53.02 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=59.1
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRS 214 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~ 214 (362)
+++++|+|..-+|+.|-+-|.+.+|...+.+. +++...|..+|..+.||++|. ++++..-|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCcee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 46789999988899999999999999877654 445568999999999999997 8899999999999765
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.60 E-value=0.3 Score=45.38 Aligned_cols=137 Identities=13% Similarity=0.149 Sum_probs=75.4
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
....+.++|++++++.++ ||.-.|+.....+... .+.-...+|.+.+++++-...++|+|+.--......++
T Consensus 34 ~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~------~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i- 105 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA------FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSI- 105 (443)
T ss_dssp --SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE------EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT----
T ss_pred CCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc------cCceeEEEEecCccEEEEECCCeEEEEEcCccccceEE-
Confidence 467899999999998855 7888888755443322 22334577888888988888999999732222111111
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEe
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIW 301 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W 301 (362)
. .+..+..| .+ |..|...+.+ .|.+||.++.. .+..+.- ..|..+.|+++ +++-.+.| ++.++
T Consensus 106 ---~-~~~~~~~I--f~-G~LL~~~~~~-~i~~yDw~~~~----~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 106 ---K-LPFSVEKI--FG-GNLLGVKSSD-FICFYDWETGK----LIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp ------SS-EEEE--E--SSSEEEEETT-EEEEE-TTT------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred ---c-CCcccceE--Ec-CcEEEEECCC-CEEEEEhhHcc----eeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 1 11122222 22 7877777655 79999998643 4444442 23788888854 66666654 77787
Q ss_pred eC
Q 044557 302 RG 303 (362)
Q Consensus 302 ~~ 303 (362)
+.
T Consensus 171 ~~ 172 (443)
T PF04053_consen 171 KY 172 (443)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.53 E-value=0.013 Score=55.33 Aligned_cols=112 Identities=11% Similarity=0.143 Sum_probs=79.4
Q ss_pred eEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE
Q 044557 71 VKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL 150 (362)
Q Consensus 71 v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 150 (362)
.++++...++++.|+.-|.+.+|+-..+.....+. .+..+.+.....
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~---------------------------------~~~~~~~~~~~v 84 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN---------------------------------EGATGITCVRSV 84 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccc---------------------------------cCccceEEEEEe
Confidence 44566667789999999999999754432211000 011233455677
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceE-----EEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCC
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKC-----LESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~-----~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~ 215 (362)
+++..++|.|+..|.|.++.++.... +......|...|++++|++++. +++|..-|+|..-.+++
T Consensus 85 s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 85 SSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 89999999999999999998766322 1222334677899999999996 99999999999887765
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.40 E-value=0.8 Score=42.36 Aligned_cols=69 Identities=6% Similarity=0.045 Sum_probs=47.8
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEe
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWR 212 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~ 212 (362)
+++..|++||+++++|.-..+|.+.+....-.+.+..+...-......+.|+.+..++..- ...|.+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg 285 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVG 285 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEEC
Confidence 5789999999999999999999999987655555554443334456778888665433322 34555553
No 343
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.024 Score=52.08 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=66.5
Q ss_pred ceeEEEEecCCCEEEEEEC-----------CCcEEEEECCCceEEEeeecc-CcccEE-EEEEcCCCcEEEEeCCCeEEE
Q 044557 144 AVSALALTKDETLLYSVSW-----------DRTIKIWRTSDFKCLESITNA-HDDAIN-AVALSDDGDVYTGSADKKIKV 210 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~-----------d~~i~iwd~~~~~~~~~~~~~-h~~~v~-~v~~~~~~~~~s~~~dg~i~i 210 (362)
.|.-+.|||+.+||+|=|. -..++|||+.+|...+.+... ....++ -..||-++++++.-.-..|.|
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisI 330 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISI 330 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEE
Confidence 4788999999999998662 257999999999877766421 112233 356898888766555578999
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 247 (362)
|+..+- .+...-.-.-.+|....|+|.+..||-
T Consensus 331 yEtpsf----~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 331 YETPSF----MLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EecCce----eeecccccCCccccCcccCCCcceEEE
Confidence 975432 122111112356777888888776663
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.34 E-value=0.9 Score=42.32 Aligned_cols=180 Identities=14% Similarity=0.166 Sum_probs=83.8
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
....|.+.+ .+|+-...+.|.|+.--+.+....+.... .+..+.. |.++....++.|.+||++++....++
T Consensus 72 ~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~~--~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i--- 142 (443)
T PF04053_consen 72 LSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLPF--SVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRI--- 142 (443)
T ss_dssp SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----SS---EEEEE----SSSEEEEETTEEEEE-TTT--EEEEE---
T ss_pred eEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCCc--ccceEEc---CcEEEEECCCCEEEEEhhHcceeeEE---
Confidence 456677744 46666668899997422222222333221 2344432 77665556669999999887543322
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCC-------C---CcEEEEEeecCccceeEEEEEeCCe-EEEeeC
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEED-------D---GNILVVGALRGHTKSILCMAVVSDL-VCSGSA 294 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~-------~---~~~~~~~~~~~h~~~v~~~~~~~~~-~~s~s~ 294 (362)
. -.+|..+.|+++|.+++..+.+ .+.+++.... + .....+.. -..+|.+..|.++. +.|...
T Consensus 143 -~--v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d~fiYtT~~ 215 (443)
T PF04053_consen 143 -D--VSAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVEDCFIYTTSN 215 (443)
T ss_dssp -S--S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETTEEEEE-TT
T ss_pred -e--cCCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEcCEEEEEcCC
Confidence 1 2348999999999999998866 5666654321 0 01222221 24567888888874 344443
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.++.+- ......++.+ ..++.=+...++.+ .|.....|+.|..+.++
T Consensus 216 --~lkYl~--~Ge~~~i~~l---d~~~yllgy~~~~~---------~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 216 --HLKYLV--NGETGIIAHL---DKPLYLLGYLPKEN---------RLYLIDRDGNVISYELD 262 (443)
T ss_dssp --EEEEEE--TTEEEEEEE----SS--EEEEEETTTT---------EEEEE-TT--EEEEE--
T ss_pred --eEEEEE--cCCcceEEEc---CCceEEEEEEccCC---------EEEEEECCCCEEEEEEC
Confidence 777653 2233334433 23444444443221 24455677888777664
No 345
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.27 E-value=0.016 Score=35.03 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=27.7
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
..|.+++|+|...+||.++.||.|.+|+++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 468899999999999999999999999983
No 346
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.26 E-value=0.13 Score=47.54 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=76.0
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-----------CCCeEEEEe
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS-----------ADKKIKVWR 212 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-----------~dg~i~iw~ 212 (362)
-+-+.|||-|.||+|-= -.-|.+|--++...++.+. |. .|.-+.|||..+ |+|-+ ....+.|||
T Consensus 213 etyv~wSP~GTYL~t~H-k~GI~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFH-KQGIALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeEEecCCceEEEEEe-ccceeeecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 35688999999999865 4668899877776666664 53 578889999886 65532 225799999
Q ss_pred CCCCCCcceeehhhhccccce-eEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 213 RSPGNKKHSLVDVLERHNSGI-NALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v-~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
+.+|....++. .+.. +..+ .-..||.|++++|--.. +.|.+|+..
T Consensus 289 I~tG~lkrsF~-~~~~-~~~~WP~frWS~DdKy~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 289 IATGLLKRSFP-VIKS-PYLKWPIFRWSHDDKYFARMTG-NSISIYETP 334 (698)
T ss_pred ccccchhccee-ccCC-CccccceEEeccCCceeEEecc-ceEEEEecC
Confidence 99987544332 2221 2222 34689999999987666 468888754
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.24 E-value=0.41 Score=41.50 Aligned_cols=148 Identities=12% Similarity=0.128 Sum_probs=83.4
Q ss_pred cCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh-------
Q 044557 152 KDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD------- 224 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~------- 224 (362)
..++.|+.|+++| +.+++.........+. +...|..+...|+-.++..-.|+.+.++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccc
Confidence 3567888999888 8999983332222222 23348999988877655555679999999875433221000
Q ss_pred ---hhhccccceeEEE--EecCCCEEEEEcCCCcEEEEeccCCCCcE-EEEEeecCccceeEEEEEeCCeEEEeeCCCcE
Q 044557 225 ---VLERHNSGINALA--LSCDGSVLYSGACDRSIIVWEKEEDDGNI-LVVGALRGHTKSILCMAVVSDLVCSGSADKTI 298 (362)
Q Consensus 225 ---~~~~h~~~v~~i~--~s~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i 298 (362)
..-.....+...+ -...+...+.......|.+|......... .....+. -...+.++.|.++.++.|..++ .
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~-f 159 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVGTSKG-F 159 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-e
Confidence 0001122344444 11344444445555688888876542222 2233332 2356778888888777776544 4
Q ss_pred EEeeCC
Q 044557 299 RIWRGI 304 (362)
Q Consensus 299 ~~W~~~ 304 (362)
.+-+..
T Consensus 160 ~~idl~ 165 (275)
T PF00780_consen 160 YLIDLN 165 (275)
T ss_pred EEEecC
Confidence 455543
No 348
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.24 E-value=0.44 Score=46.13 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=77.4
Q ss_pred CceeEEEEecCCCEEEEEE------CCCc--EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC--------
Q 044557 143 DAVSALALTKDETLLYSVS------WDRT--IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-------- 205 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s------~d~~--i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-------- 205 (362)
..+...+++|+++.++..- .|.. |.+++... .. ..+..+. ....-.|+|+|. +++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 3567888999999876655 2444 44445422 22 2232222 255667999865 5544322
Q ss_pred ----CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC-CCCcEEEEE--ee-cCccc
Q 044557 206 ----KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE-DDGNILVVG--AL-RGHTK 277 (362)
Q Consensus 206 ----g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~--~~-~~h~~ 277 (362)
+.+.+..++.+... . .....|..+.|||||..|+.-. ++.|.+--+.. ..+...+.. .+ .+-..
T Consensus 426 ~~~~gql~~~~vd~ge~~-----~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 426 DPATGQLARTPVDASAVA-----S--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred cCCCceEEEEeccCchhh-----h--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 22222233222110 0 2345799999999999888655 46666632221 122222211 11 11222
Q ss_pred eeEEEEEeCC-eEEEeeCCCcEEEeeC
Q 044557 278 SILCMAVVSD-LVCSGSADKTIRIWRG 303 (362)
Q Consensus 278 ~v~~~~~~~~-~~~s~s~D~~i~~W~~ 303 (362)
.+..+.|.++ .|+.+..+....+|.+
T Consensus 498 ~~~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 498 TAVSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred ccccceEecCCEEEEEecCCCCceEEE
Confidence 3466778654 4555555555566753
No 349
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.022 Score=53.12 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=56.3
Q ss_pred ccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee-EEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 186 DAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN-ALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 186 ~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~-~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
..+.-+.|+|.-. +|.+..+|.|.+..+.- . .+.++.-|..+++ +++|.|||+.|+.|-.||+|++-|.+.+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-q----Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW-Q----RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc-c----eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3567788999876 67888999888876652 1 1233444566666 99999999999999999999999998643
No 350
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.05 E-value=0.02 Score=46.84 Aligned_cols=103 Identities=16% Similarity=0.252 Sum_probs=62.6
Q ss_pred CCEEEEEECCCcEEEEECCCceEE-EeeeccCcccEEE-EEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccc
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCL-ESITNAHDDAINA-VALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~h~~~v~~-v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
+.-+++|+.||.|.+|+....-.+ ..+.... ..|.+ +..-.++. ..+++.||.|+.|+...... ......|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~-e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~----~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE-ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV----LGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhccc-ccceeccccccccceeEEeccCCceeeeccccCce----eeeecccc
Confidence 456888999999999987632111 1111111 12222 22223333 56889999999998876542 22233455
Q ss_pred -cceeEEEEecCCCEEEEE--cCCCcEEEEeccC
Q 044557 231 -SGINALALSCDGSVLYSG--ACDRSIIVWEKEE 261 (362)
Q Consensus 231 -~~v~~i~~s~~~~~l~s~--~~d~~i~~wd~~~ 261 (362)
.++.....+..+..|..+ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 556666666667777777 7888888888754
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.04 E-value=0.81 Score=38.96 Aligned_cols=186 Identities=12% Similarity=0.118 Sum_probs=99.4
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCc
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKK 219 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~ 219 (362)
...+..++|+|+.+ ++++....+.|...+. +++.++.+...-.+....|++..++.++... .++.+.++++......
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 34589999999866 5555566678877776 4677777654444568899998888866655 4888988887433211
Q ss_pred c------eee-hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC--CCCcEEEEEeecC------ccceeEEEEE
Q 044557 220 H------SLV-DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE--DDGNILVVGALRG------HTKSILCMAV 284 (362)
Q Consensus 220 ~------~~~-~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~------h~~~v~~~~~ 284 (362)
. ++. .....++..+-.++|.|.++.|+.+-...-..+|.+.. ...... ...... ....+..+++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF-VSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E-EEE-HHHH-HT--SS---EEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee-eccccccccccceeccccceEE
Confidence 1 111 11123556788999999988888887777677777653 222221 111111 2233567777
Q ss_pred eCC---eEEEeeCCCcEEEeeCCCCceeeeeEecC-C------CCcEEEEEeeecC
Q 044557 285 VSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEG-H------RGPVKCLAAAIDN 330 (362)
Q Consensus 285 ~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~-h------~~~v~~~~~~~~~ 330 (362)
.+. +++-+.+.+.+-..|... .....-.|.+ . -..--.++|.+++
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred cCCCCeEEEEECCCCeEEEECCCC-CEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence 653 777788888888888322 2222223332 1 1246677776543
No 352
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=0.024 Score=46.41 Aligned_cols=135 Identities=17% Similarity=0.202 Sum_probs=72.6
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc-CCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee-EE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS-DDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN-AL 236 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~-~i 236 (362)
..+.|+.|+-++++..+.--.-...|..- .... -+..++.|+.+|.|.+|...-... .......-...|- -|
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~---~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA---HSDRVCSGEESIDLGI 108 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccch---HHHhhhcccccceecc
Confidence 34667888887766433211000112111 1111 123488999999999997652111 1111111112222 22
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEE--eCCeEEEe--eCCCcEEEeeC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAV--VSDLVCSG--SADKTIRIWRG 303 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~--~~~~~~s~--s~D~~i~~W~~ 303 (362)
..-.++.+..+++.||.||.|+..... .++....|+ ..+..... +..+++.+ |.|..++.|++
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k----~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNK----VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCc----eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 223356689999999999999987543 233344455 33333333 33466676 88888888875
No 353
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.96 E-value=1 Score=39.54 Aligned_cols=154 Identities=11% Similarity=0.143 Sum_probs=74.7
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCC--ceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC-CCC
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSD--FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSP-GNK 218 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~-~~~ 218 (362)
...+..+..++|++++++++.-..+.-||... .+... ..-...|..|.|.|++.+...+..|.|+.=+... .+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~---r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN---RNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGET 220 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc---cCccceehhceecCCCCEEEEeCCcEEEEccCCCCccc
Confidence 35677888899999998887666667887543 23322 2345689999999999887777888888765211 110
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCc
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKT 297 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~ 297 (362)
-...+..+......+..++|.+++...++|+. |.+ +.+...+ ...........-...+..+.|. ++.-..-+.||.
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgG-ktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGG-KTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTT-SS-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCC-ccceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 00000111122334788899988777666654 444 3333322 2222221111223345666664 455556667776
Q ss_pred EEEe
Q 044557 298 IRIW 301 (362)
Q Consensus 298 i~~W 301 (362)
+.-|
T Consensus 298 ll~~ 301 (302)
T PF14870_consen 298 LLRY 301 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6544
No 354
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.83 E-value=0.57 Score=45.29 Aligned_cols=187 Identities=12% Similarity=0.164 Sum_probs=95.1
Q ss_pred CCCEEEEEECCC------cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCC------CeEEEEeCCCCCCcc
Q 044557 153 DETLLYSVSWDR------TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSAD------KKIKVWRRSPGNKKH 220 (362)
Q Consensus 153 ~~~~l~s~s~d~------~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~d------g~i~iw~~~~~~~~~ 220 (362)
.+.+++.||.++ .+..||..+................++++..+.-+++|+.| ..+..||.....-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W-- 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW-- 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce--
Confidence 355677787773 67788887764333222222333445555544346788888 3577788765431
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCc-----EEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRS-----IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD 295 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~-----i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D 295 (362)
.....+.......... .-+|...++||.||. |-.||..+++ +..+..+.......-...+.+.+.+.|+.|
T Consensus 362 ~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred eccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCc--ccccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence 1111122111111111 237889999999975 5567765432 222332322122222333445677777755
Q ss_pred C------cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc-----EEEEec
Q 044557 296 K------TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD-----IKVWQI 356 (362)
Q Consensus 296 ~------~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~-----i~~W~~ 356 (362)
+ ++..||-....+..+..+.--..... ++.. ++++.+.||.|+. |..+|.
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~----------~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL----------NGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccce-EEEE----------CCEEEEECCccCCCccceEEEEcC
Confidence 4 34566654445554444432221111 2221 2356777777763 455554
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.73 E-value=0.28 Score=48.52 Aligned_cols=134 Identities=14% Similarity=0.167 Sum_probs=83.2
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC------CCcEEEEeCCCeEEEEeCCCCCCcceeeh---hhhcccc
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD------DGDVYTGSADKKIKVWRRSPGNKKHSLVD---VLERHNS 231 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~------~~~~~s~~~dg~i~iw~~~~~~~~~~~~~---~~~~h~~ 231 (362)
.....|.-.|++.++.+..+......+|..++-.. +...+.|-.++.+..||.+-... ++.. .......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--ceeeccccccccCC
Confidence 45578888899999999998754444455543221 12357788888999999875321 1211 0112344
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
..+|++-+.+ .+||.|+.+|.||+||... .. .-..+++-..+|..+..+.+ .++ +..+..+.|.+
T Consensus 579 ~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g-~~---AKT~lp~lG~pI~~iDvt~DGkwil-aTc~tyLlLi~ 645 (794)
T PF08553_consen 579 NFSCFATTED-GYIAVGSNKGDIRLYDRLG-KR---AKTALPGLGDPIIGIDVTADGKWIL-ATCKTYLLLID 645 (794)
T ss_pred CceEEEecCC-ceEEEEeCCCcEEeecccc-hh---hhhcCCCCCCCeeEEEecCCCcEEE-EeecceEEEEE
Confidence 5667765554 5889999999999999532 11 22245666788988888654 322 22234555554
No 356
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.54 E-value=2 Score=39.79 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=66.0
Q ss_pred eEEEEecCCCEEEEE-ECCC----cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeC----------CCeE
Q 044557 146 SALALTKDETLLYSV-SWDR----TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSA----------DKKI 208 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~-s~d~----~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~----------dg~i 208 (362)
....++|+++++|-+ +..| .|++.|+++++.+...... .....+.|.+++. ++ +... ...|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 356789999987754 4444 5999999999876543211 1123489999976 43 3321 3358
Q ss_pred EEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC----CcEEEEeccC
Q 044557 209 KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD----RSIIVWEKEE 261 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d----~~i~~wd~~~ 261 (362)
..|++.+....-.++............+..++|+++|+..+.. ..+.+.++..
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 8888866533212322222222224567889999988754332 3466677665
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.54 E-value=1.3 Score=37.44 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=79.4
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeE-EEEEcCceeEEEecCCcEEEEecCCCCCCccccee
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVK-SLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 107 (362)
..+++.||..+.++--|..++...++.... ..+. +..+.+|.++.|+..|.+.+.+.++++... .+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----------~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w-~f~- 90 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----------VRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIW-NFV- 90 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC----------ceeeeeeEEECCEEEEEEccCcEEEEEecchhhee-eee-
Confidence 467888888888877776554332222211 1111 122357889999999999998887654210 000
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCcee-EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcc
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVS-ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD 186 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~ 186 (362)
-.+.|- .....+++..++.|+.|++...-|..+..++-+.+-+- .
T Consensus 91 ---------------------------------~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-~ 136 (354)
T KOG4649|consen 91 ---------------------------------ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-G 136 (354)
T ss_pred ---------------------------------ehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC-c
Confidence 011111 12346788999999999999999999888876643221 1
Q ss_pred cEEEEEEcC-CCcEEEEeCCCeEEE
Q 044557 187 AINAVALSD-DGDVYTGSADKKIKV 210 (362)
Q Consensus 187 ~v~~v~~~~-~~~~~s~~~dg~i~i 210 (362)
...+=++.| ++.++.+...|.|.-
T Consensus 137 ~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 137 TFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred eeccceecCCCceEEEEeccceEEE
Confidence 111223344 444555555554433
No 358
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.48 E-value=0.55 Score=45.30 Aligned_cols=109 Identities=14% Similarity=0.182 Sum_probs=68.6
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc--CCCc-EEEEeCCCeEEEEeCC-----CCCCcce
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS--DDGD-VYTGSADKKIKVWRRS-----PGNKKHS 221 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~--~~~~-~~s~~~dg~i~iw~~~-----~~~~~~~ 221 (362)
-+.-++..++-+....+.|||.+.+.......-...+.|.++.|. |+++ +++.+-.+.|.+|.-. ...+...
T Consensus 37 gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 37 GSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred ecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 334344444444445899999998774433322346789999985 7776 8889999999998532 1111111
Q ss_pred eehh--hhccc-cceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 222 LVDV--LERHN-SGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 222 ~~~~--~~~h~-~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
.+.. +..|. .+|.+..|.++|..++.+| +.+.++|..
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 1111 12232 5788999999998877664 578888753
No 359
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.46 E-value=0.0039 Score=60.34 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=27.6
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG 197 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~ 197 (362)
|..+-|-++.-++..+-.++.|++-..++-.. .+...|...+..++|...|
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhc
Confidence 33444455555666666677777765543221 2333576666666554443
No 360
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.44 E-value=0.52 Score=42.96 Aligned_cols=104 Identities=14% Similarity=0.200 Sum_probs=55.6
Q ss_pred CCcEEEEECCCceEEEeeeccCcc-cEEEEEEcC--CCc--EEEEeCCCeEEEEeC-CCCCCcc-eeeh-----------
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDD-AINAVALSD--DGD--VYTGSADKKIKVWRR-SPGNKKH-SLVD----------- 224 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~-~v~~v~~~~--~~~--~~s~~~dg~i~iw~~-~~~~~~~-~~~~----------- 224 (362)
-+++.+||+.+.+.++++..+.++ ....|.|.. +.. ++.+....+|..|-. +.+.-.. +.+.
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 368999999999999998876544 456788753 332 555555556655533 2221000 0110
Q ss_pred -----hhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccCCCCcE
Q 044557 225 -----VLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEEDDGNI 266 (362)
Q Consensus 225 -----~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~~~~~~ 266 (362)
.+..-..-|+.|.+|.|.++|+... .+|.||.||+.......
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence 0111123478999999999998666 69999999998765443
No 361
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.072 Score=53.00 Aligned_cols=101 Identities=14% Similarity=0.212 Sum_probs=67.1
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS 231 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~ 231 (362)
.+..++.|+.-|.+-..|+...-..-.....-.++|.+++|+.+|. ++.|-.+|.|.+||...+... ..+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l----~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL----KVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce----eeeeecCC
Confidence 3456888888889988887653111011122356899999999998 556778999999999775433 23334444
Q ss_pred cee---EEEEecCCCEEEEEcCCCcEEEEec
Q 044557 232 GIN---ALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 232 ~v~---~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
+++ .+.+..++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 444 3445567778888887775 5653
No 362
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.33 E-value=1.1 Score=43.11 Aligned_cols=95 Identities=17% Similarity=0.085 Sum_probs=56.4
Q ss_pred CCeEEEEeCCC----CCCcceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccCCCC--------cEEEEEe
Q 044557 205 DKKIKVWRRSP----GNKKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEEDDG--------NILVVGA 271 (362)
Q Consensus 205 dg~i~iw~~~~----~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~~~~--------~~~~~~~ 271 (362)
++.|.+.|..+ +......+. -......+.++|||+++++++ .+++|.+.|+.+... .-.+...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 45677777765 211111111 123456789999999888666 589999999875321 0112222
Q ss_pred ecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 272 LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 272 ~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
.+- ....+..+|+++ .+.|-..|..|--|++.
T Consensus 371 vev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 371 PEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ecc-CCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 211 122345566544 67788889999999853
No 363
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.28 E-value=0.057 Score=32.63 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=27.8
Q ss_pred ccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 230 NSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 230 ~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
..+|..++|+|....||.+..||.|.+|.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457999999999999999999999999987
No 364
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.21 E-value=0.31 Score=46.62 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=61.9
Q ss_pred CcEEEEECCC-----ceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCc--------ceeehhhhc
Q 044557 164 RTIKIWRTSD-----FKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKK--------HSLVDVLER 228 (362)
Q Consensus 164 ~~i~iwd~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~--------~~~~~~~~~ 228 (362)
+.|.+.|..+ .+.+..+. -......+.++|||+ ++++..+.+|.|.|++..... ..+.....-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 4577777766 33444332 233567899999998 446677999999998764310 011111111
Q ss_pred cccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
...-...+|.++|....|-..|.+|..|++..
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22233568889998888889999999999764
No 365
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.16 E-value=0.94 Score=43.83 Aligned_cols=177 Identities=15% Similarity=0.240 Sum_probs=90.5
Q ss_pred CCCEEEEEECC------CcEEEEECCCceEEE--eeeccCcccEEEEEEcCCCc-EEEEeCCC-----eEEEEeCCCCCC
Q 044557 153 DETLLYSVSWD------RTIKIWRTSDFKCLE--SITNAHDDAINAVALSDDGD-VYTGSADK-----KIKVWRRSPGNK 218 (362)
Q Consensus 153 ~~~~l~s~s~d------~~i~iwd~~~~~~~~--~~~~~h~~~v~~v~~~~~~~-~~s~~~dg-----~i~iw~~~~~~~ 218 (362)
++.+.++||.| .++..||....+... .+.... .=.+++.. +|. ++.|+.|| +|..||..+.+-
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R--~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR--SDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc--ccceeEEE-CCEEEEEeccccccccccEEEecCCCCcc
Confidence 45777888888 356677876655322 111110 01122222 455 56788886 477787765431
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCc------EEEEeccCCCCcEEEEEeecCccceeEEEEE-eCCeEEE
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRS------IIVWEKEEDDGNILVVGALRGHTKSILCMAV-VSDLVCS 291 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~------i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~s 291 (362)
.....+......... ..-+|...++||.|+. +..||..++. +..+..+..-... ..++. .+.+++.
T Consensus 409 --~~va~m~~~r~~~gv--~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~-~g~a~~~~~iYvv 481 (571)
T KOG4441|consen 409 --TPVAPMLTRRSGHGV--AVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSG-FGVAVLNGKIYVV 481 (571)
T ss_pred --cccCCCCcceeeeEE--EEECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCccccccc-ceEEEECCEEEEE
Confidence 111111111111111 2237888888886654 5667765432 2223222221121 22333 3446677
Q ss_pred eeCCC-----cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc
Q 044557 292 GSADK-----TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD 350 (362)
Q Consensus 292 ~s~D~-----~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~ 350 (362)
|+.|+ +|..+|....++..+..+....+.+...+. ++.+.+.|+.||.
T Consensus 482 GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~-----------~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 482 GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL-----------GGKLYAVGGFDGN 534 (571)
T ss_pred CCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE-----------CCEEEEEecccCc
Confidence 77665 377788666666666555544444433332 2345667777775
No 366
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.70 E-value=0.13 Score=46.49 Aligned_cols=93 Identities=15% Similarity=0.070 Sum_probs=56.4
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh-------------hcc
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL-------------ERH 229 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~h 229 (362)
.+.+.|||+++++...... . ...+....|+|+|..++-..++.|.+++..++.. ..+...- ++-
T Consensus 22 ~~~y~i~d~~~~~~~~l~~-~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP-P-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTTTEEEESS--E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCCCceEECcC-C-ccccccceeecCCCeeEEEecCceEEEECCCCCe-EEeccccceeEEcCccceecccc
Confidence 3678899999876544222 2 4567788999999977777789999998765521 1121100 000
Q ss_pred -ccceeEEEEecCCCEEEEEcCC-CcEEEEe
Q 044557 230 -NSGINALALSCDGSVLYSGACD-RSIIVWE 258 (362)
Q Consensus 230 -~~~v~~i~~s~~~~~l~s~~~d-~~i~~wd 258 (362)
-..-..+.|||||++|+....| ..|+.+.
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 1123568999999999877654 3444443
No 367
>PHA02713 hypothetical protein; Provisional
Probab=94.62 E-value=0.73 Score=44.55 Aligned_cols=70 Identities=1% Similarity=0.007 Sum_probs=41.2
Q ss_pred cCCCEEEEEcCCC------cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCC--cEEEeeCCCCceee
Q 044557 240 CDGSVLYSGACDR------SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADK--TIRIWRGIDRNYTC 310 (362)
Q Consensus 240 ~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~--~i~~W~~~~~~~~~ 310 (362)
-+|+..+.||.++ .+..||.++. ..+..+..++......-...+.+.+.+.|+.|+ ++..||....++..
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTY-NGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCC-CCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccccccc
Confidence 3677777777652 3567887651 124444455443333334445566788888888 67777765555543
No 368
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.54 E-value=4.4 Score=38.52 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=80.0
Q ss_pred EEEecCCCEEEEEECCC------------------cEEEEECCCceEEEeeeccCcc-----cEEEEEEc----CCC---
Q 044557 148 LALTKDETLLYSVSWDR------------------TIKIWRTSDFKCLESITNAHDD-----AINAVALS----DDG--- 197 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~------------------~i~iwd~~~~~~~~~~~~~h~~-----~v~~v~~~----~~~--- 197 (362)
.++.+.+..++.++.|+ .|.-.|.++++.+-.....+.. ......+. -++
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 34455556666676554 6888899888876554322111 00000111 122
Q ss_pred -cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE------------------cCCCcEEEEe
Q 044557 198 -DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG------------------ACDRSIIVWE 258 (362)
Q Consensus 198 -~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~------------------~~d~~i~~wd 258 (362)
.++.++.+|.+...|..+++..-+.... ...++.+| ..++.+ ..+|.+...|
T Consensus 302 ~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 302 PAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred EEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 2667888999999999988754322110 01122233 223222 2356677777
Q ss_pred ccCCCCcEEEEEeecCcc------cee--EEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEe
Q 044557 259 KEEDDGNILVVGALRGHT------KSI--LCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~------~~v--~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l 314 (362)
+.+++..... ....+. ... ..+...++.+..++.||.+..+|.. +++.+.+.
T Consensus 373 ~~tG~~~W~~--~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~--tG~~lW~~ 432 (488)
T cd00216 373 PKTGKVVWEK--REGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT--TGKELWKF 432 (488)
T ss_pred CCCCcEeeEe--eCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC--CCceeeEE
Confidence 7654422111 111110 011 1234556788888999999999853 34444443
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=0.65 Score=43.04 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=77.8
Q ss_pred CCCE-EEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcE--------EEEeCCCeEEEEeCCCCCCcceee
Q 044557 153 DETL-LYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDV--------YTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 153 ~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~--------~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
+.++ |.++.....++=-|++.++.+..+.. +. .|+-+.+.|+.++ +.|-.|+.|.-||..-.... .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~-~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKF-ED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeec-cC-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcc--ee
Confidence 3444 44455556777779999999998863 33 3777788887642 45667888999997643321 11
Q ss_pred hhhhccc----cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 224 DVLERHN----SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 224 ~~~~~h~----~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
...+.|+ ....|++-.. ..+|+.||.+|.||+||... .. .-..+++-...|..+..+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~-~~---AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIG-RR---AKTALPGLGDAIKHVDVT 480 (644)
T ss_pred eeeeccccccccccceeeecC-CceEEEeecCCcEEeehhhh-hh---hhhcccccCCceeeEEee
Confidence 1222232 2344544443 45899999999999999732 21 122466777778777664
No 370
>PHA02790 Kelch-like protein; Provisional
Probab=94.27 E-value=5.1 Score=38.05 Aligned_cols=185 Identities=9% Similarity=0.025 Sum_probs=84.8
Q ss_pred cCCCEEEEEECCC-----cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC--CeEEEEeCCCCCCcceee
Q 044557 152 KDETLLYSVSWDR-----TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD--KKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 152 ~~~~~l~s~s~d~-----~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d--g~i~iw~~~~~~~~~~~~ 223 (362)
.++.+++.||.++ .+..||..+.+....-.......-.+++. -++. ++.|+.+ ..+..||..+.. -...
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~--W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAA--WVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCe--EEEC
Confidence 3455667777553 46678877655332111111111112222 2566 4556643 357788865432 1111
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCC---cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEE
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDR---SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRI 300 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~ 300 (362)
..+....... ....-+|+..+.||.++ .+..||..++ .+.....+...........+.+.+.+.|+ .+.+
T Consensus 347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ 419 (480)
T PHA02790 347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEF 419 (480)
T ss_pred CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEEECCEEEEECC---ceEE
Confidence 1121111111 12233778778888654 4667876542 22222222211111122233444555553 4677
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCC-----CcEEEEecc
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD-----CDIKVWQIS 357 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D-----~~i~~W~~~ 357 (362)
|+.....+..+..+..-..... ++.. ++++.+.||.+ .++..+|..
T Consensus 420 ydp~~~~W~~~~~m~~~r~~~~-~~v~----------~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDNPE-LIIV----------DNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred ecCCCCcEeEcCCCCCCccccE-EEEE----------CCEEEEECCcCCCcccceEEEEECC
Confidence 8866666665554432122222 2221 12456667654 346677764
No 371
>PHA03098 kelch-like protein; Provisional
Probab=94.17 E-value=5.7 Score=38.27 Aligned_cols=153 Identities=7% Similarity=0.069 Sum_probs=67.9
Q ss_pred cCCCEEEEEECCC------cEEEEECCCceEEEeeecc-CcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCCCC
Q 044557 152 KDETLLYSVSWDR------TIKIWRTSDFKCLESITNA-HDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPGNK 218 (362)
Q Consensus 152 ~~~~~l~s~s~d~------~i~iwd~~~~~~~~~~~~~-h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~~~ 218 (362)
.++.+++.||.++ .+..||..+.+....-... ..... +++.. ++. ++.||.+ ..+..||..+..-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3456666676543 5677887765542211101 11111 22222 455 4556654 3567787765421
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCC------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEe
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACD------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSG 292 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~ 292 (362)
.....+....... ++ ..-+++..+.||.+ +.+..||..+.. +..+..++........+...+.+++.|
T Consensus 371 --~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 371 --REEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAIYHDGKIYVIG 444 (534)
T ss_pred --eeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEEEECCEEEEEC
Confidence 1111111111111 11 22366777777742 357788876432 222222221111112222334455556
Q ss_pred eCCC--------cEEEeeCCCCceeeee
Q 044557 293 SADK--------TIRIWRGIDRNYTCLA 312 (362)
Q Consensus 293 s~D~--------~i~~W~~~~~~~~~~~ 312 (362)
+.+. .+.+||.....+..+.
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCC
Confidence 5421 2777776555555444
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=0.27 Score=49.24 Aligned_cols=68 Identities=24% Similarity=0.447 Sum_probs=50.6
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEE----EEcCCCcEEEEeCCCeEEEEe
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAV----ALSDDGDVYTGSADKKIKVWR 212 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v----~~~~~~~~~s~~~dg~i~iw~ 212 (362)
.++|++++|+.+|+.++.|=.+|.|.+||+...+.++.+. .|..+...+ .++.+..++++...|. +|.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 4689999999999999999999999999999988777664 344443333 3344444777777775 554
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.61 E-value=1.9 Score=41.80 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=57.8
Q ss_pred eeEEEEecCCCEEEEEECC-CcEEEEE-----------CCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEE--
Q 044557 145 VSALALTKDETLLYSVSWD-RTIKIWR-----------TSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKV-- 210 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d-~~i~iwd-----------~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~i-- 210 (362)
...-.|+|||+.+++.+.. ..+++.+ +..+.... .....|..+.|+|||.-+....+|.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMIIGGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEECCEEEEEE
Confidence 4566789998877776533 2233332 22221111 1245799999999997332222577766
Q ss_pred -EeCCCCCCcceeehh--h-hccccceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 211 -WRRSPGNKKHSLVDV--L-ERHNSGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 211 -w~~~~~~~~~~~~~~--~-~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
-....+. ..+... + ..-...+.++.|..++..+ .+..++...+|.+.
T Consensus 475 Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 475 VEQTEDGQ--YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EEeCCCCc--eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 3322332 222110 1 1122335789999988855 55555544455543
No 374
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.31 E-value=4.3 Score=37.71 Aligned_cols=111 Identities=20% Similarity=0.114 Sum_probs=62.1
Q ss_pred ceeEEEEecCCCEEEEEE---CC-CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEE--eCCC
Q 044557 144 AVSALALTKDETLLYSVS---WD-RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVW--RRSP 215 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s---~d-~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw--~~~~ 215 (362)
.+..-+|+|++..++-.+ .. ..+.++++++++....+. ....-..-+|+|+|+ +++...||...|| |+..
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 345556788887654432 22 358889998876544333 112223357999997 4567777765555 5554
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCc--EEEEeccC
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRS--IIVWEKEE 261 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~--i~~wd~~~ 261 (362)
.. ...+ ..-.+.-+.=.|+|||+.|+-. +..|. |.+++.+.
T Consensus 272 ~~-~~~L----t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 272 KN-LPRL----TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred Cc-ceec----ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 33 1111 1111222245789999987754 44554 44455543
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=0.65 Score=43.03 Aligned_cols=109 Identities=15% Similarity=0.259 Sum_probs=70.6
Q ss_pred eeEEEEecCCCE-------EEEEECCCcEEEEECCCc-e-EEEeeeccCc----ccEEEEEEcCCCcEEEEeCCCeEEEE
Q 044557 145 VSALALTKDETL-------LYSVSWDRTIKIWRTSDF-K-CLESITNAHD----DAINAVALSDDGDVYTGSADKKIKVW 211 (362)
Q Consensus 145 v~~~~~~~~~~~-------l~s~s~d~~i~iwd~~~~-~-~~~~~~~~h~----~~v~~v~~~~~~~~~s~~~dg~i~iw 211 (362)
|.-+.+.|+.+. =+.|=.|..|.-||++-. + .+. +...|. ....|.+-..+|.++.|+.+|.||+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~-~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA-VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLY 456 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee-eeeccccccccccceeeecCCceEEEeecCCcEEee
Confidence 555556654321 123556888999997622 1 222 222231 23556667788999999999999999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
|. .+... ...+++-..+|.-|..+.||++|+..+ +..+.+-+.
T Consensus 457 dr-i~~~A---KTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 457 DR-IGRRA---KTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred hh-hhhhh---hhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 97 34322 233456678999999999999988655 556666654
No 376
>PHA03098 kelch-like protein; Provisional
Probab=93.18 E-value=4.5 Score=38.94 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=68.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC------CeEEEEeCCCCCCcc
Q 044557 153 DETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD------KKIKVWRRSPGNKKH 220 (362)
Q Consensus 153 ~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d------g~i~iw~~~~~~~~~ 220 (362)
++++.+.||.+ ..+..||..+.+....-...+...-.+++.. +++ ++.|+.+ +.+..||..+..-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-- 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKW-- 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCee--
Confidence 56667777765 3467788766542211111111111122222 455 4455522 4578888765421
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCC--------cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEe
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDR--------SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSG 292 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~--------~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~ 292 (362)
.....+....... + +...++..++.||.+. .+..||..++. +..+..+.........+.+.+.+++.|
T Consensus 419 ~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~G 494 (534)
T PHA03098 419 SKGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIFNNKIYVVG 494 (534)
T ss_pred eecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEECCEEEEEc
Confidence 1111111111111 1 2223566667776432 37788876532 222222221111112223344455666
Q ss_pred eCC-----CcEEEeeCCCCceeeeeE
Q 044557 293 SAD-----KTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 293 s~D-----~~i~~W~~~~~~~~~~~~ 313 (362)
+.+ ..|.+||.....+..+..
T Consensus 495 G~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 495 GDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCcCCcccceeEEEeCCCCEEEecCC
Confidence 544 456777755555544443
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.13 E-value=5.3 Score=34.54 Aligned_cols=161 Identities=13% Similarity=0.127 Sum_probs=99.5
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~ 220 (362)
...+.++.|+|+.+.|++......-.||=..+++.++.+-..--.....+.+..+|+++.+. .++.+.++.++.+....
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 34589999999999999988888888887777888877643333344567777777765544 56777777665543211
Q ss_pred ee------ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccc-------eeEEEEEe--
Q 044557 221 SL------VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK-------SILCMAVV-- 285 (362)
Q Consensus 221 ~~------~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~-------~v~~~~~~-- 285 (362)
.. .......+.+.-.++|.|.++.|+.+=.-+=+.+|......... .......++. .|..+.|.
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l-~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL-SVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc-ccccccCcccccceEeeccccceecCC
Confidence 11 11111125667789999999999999888878777665322111 1111122222 13344454
Q ss_pred -CCeEEEeeCCCcEEEeeC
Q 044557 286 -SDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 286 -~~~~~s~s~D~~i~~W~~ 303 (362)
+.+++-+.+++.+.--+.
T Consensus 244 ~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred CCcEEEEecCCceEEEEec
Confidence 225666666776666553
No 378
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.09 E-value=0.92 Score=37.92 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=42.7
Q ss_pred EecCCCEEEEEECCCcEEEEECCCceEEEee------ec-------cCcccEEEEEEcCCCcEEEEeCCCeEEEEeC
Q 044557 150 LTKDETLLYSVSWDRTIKIWRTSDFKCLESI------TN-------AHDDAINAVALSDDGDVYTGSADKKIKVWRR 213 (362)
Q Consensus 150 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------~~-------~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~ 213 (362)
+..++.+|++-+.+|.+++||+.+.+++..- .. .....|..+.+..+|..+..-.+|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 4556888999999999999999988764321 11 2334567777777776333334566666654
No 379
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.90 E-value=0.6 Score=27.42 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=24.9
Q ss_pred CceeEEEEecCC---CEEEEEECCCcEEEEECCC
Q 044557 143 DAVSALALTKDE---TLLYSVSWDRTIKIWRTSD 173 (362)
Q Consensus 143 ~~v~~~~~~~~~---~~l~s~s~d~~i~iwd~~~ 173 (362)
+.++++.|+|+. .+|+-+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 367899999754 4777777778999999984
No 380
>PRK13684 Ycf48-like protein; Provisional
Probab=92.89 E-value=6.8 Score=35.17 Aligned_cols=154 Identities=10% Similarity=0.109 Sum_probs=81.0
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEE-EECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcce
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKI-WRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~i-wd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
..+..+.+.|++.+++++. .|.+.. ++- .++........-...+.++.+.+++.++..+..|.+++=..+.+.. .+
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~s-W~ 249 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLES-WS 249 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCc-cc
Confidence 4577888899887666554 565443 222 2222222333344578899999999877777888775422333221 11
Q ss_pred eehhh-hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCcEE
Q 044557 222 LVDVL-ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKTIR 299 (362)
Q Consensus 222 ~~~~~-~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~i~ 299 (362)
..... ......+.++.+.|++.. +.++.+|.+.. ....+ ..........+-......+.+. ++.....+..|.|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred cccCCccccccceeeEEEcCCCCE-EEEcCCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEE
Confidence 11100 001235778889887764 45556776643 33222 1222111001111234555553 45555667778887
Q ss_pred Eee
Q 044557 300 IWR 302 (362)
Q Consensus 300 ~W~ 302 (362)
-|+
T Consensus 327 ~~~ 329 (334)
T PRK13684 327 RYV 329 (334)
T ss_pred Eec
Confidence 776
No 381
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.40 E-value=3.5 Score=37.78 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=75.3
Q ss_pred eEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe---CCCeEEEEeCCCCCCcc
Q 044557 146 SALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS---ADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 146 ~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~---~dg~i~iw~~~~~~~~~ 220 (362)
..+++++.++ ..+....++.|.+.|....+.......+. ....++++|++. ++.+. .+++|.+.|..+.....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 4667788887 45555566999999988877777665443 556789999885 54443 36888888877654332
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEE 261 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~ 261 (362)
. ...-..+ ..++++|+|..++... .+++|.+.|...
T Consensus 155 ~----~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 155 T----IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred E----EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 2 1112234 7899999999766655 788999998654
No 382
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.36 E-value=6.5 Score=33.68 Aligned_cols=152 Identities=20% Similarity=0.175 Sum_probs=80.4
Q ss_pred ceeEEEEecCCCEEEEEE---CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEE-eCCCeEEEEe-CCCCCC
Q 044557 144 AVSALALTKDETLLYSVS---WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTG-SADKKIKVWR-RSPGNK 218 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~-~~dg~i~iw~-~~~~~~ 218 (362)
.+.+.+++++++.+|... ....+.++.... ....+.. ...+..-.|.+++.+.+. ..+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 467888999998776655 233455554332 2222221 225566678888876554 3445555553 233322
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEc---CCCcEEEEeccCCCCc--EEEEE---eecCccceeEEEEEeCC--e
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGA---CDRSIIVWEKEEDDGN--ILVVG---ALRGHTKSILCMAVVSD--L 288 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~---~d~~i~~wd~~~~~~~--~~~~~---~~~~h~~~v~~~~~~~~--~ 288 (362)
......... -...|.++.+||||..++.-. .++.|.+--+...... ..+.. ........+..+.|.++ +
T Consensus 101 ~~~~v~~~~-~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 101 EPVEVDWPG-LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eeEEecccc-cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 211122111 112899999999999877555 3566766654322111 11111 11123456788899765 3
Q ss_pred -EEEeeCCCcEEE
Q 044557 289 -VCSGSADKTIRI 300 (362)
Q Consensus 289 -~~s~s~D~~i~~ 300 (362)
+++...+..+..
T Consensus 180 ~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 180 VVLGRSAGGPVVR 192 (253)
T ss_pred EEEeCCCCCceeE
Confidence 344444554433
No 383
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=4.6 Score=37.08 Aligned_cols=119 Identities=9% Similarity=0.068 Sum_probs=71.3
Q ss_pred CcEEEEECCCc--eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 164 RTIKIWRTSDF--KCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 164 ~~i~iwd~~~~--~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
|.+.=|-+... .....+.....++|.++.|++|++ ++.--.|++|.+++....+.........+..+..|-...|+.
T Consensus 43 ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 43 GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS 122 (657)
T ss_pred CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec
Confidence 44445544332 233445555677999999999998 555678999999998665544444444444445577778875
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (362)
. .-++--...| +-+|-....... +...+.|...|....|..+
T Consensus 123 s-~e~A~i~~~G-~e~y~v~pekrs---lRlVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 123 S-TEIAFITDQG-IEFYQVLPEKRS---LRLVKSHNLNVNWYMYCPE 164 (657)
T ss_pred C-eeEEEEecCC-eEEEEEchhhhh---hhhhhhcccCccEEEEccc
Confidence 4 4444444333 556655433322 2234456666777777655
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.18 E-value=7 Score=33.67 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=37.1
Q ss_pred EEecCCCEEEEEECC-----CcEEEEECCCc-eEEEeeeccCcccEEEEEEcCCCcEEEE
Q 044557 149 ALTKDETLLYSVSWD-----RTIKIWRTSDF-KCLESITNAHDDAINAVALSDDGDVYTG 202 (362)
Q Consensus 149 ~~~~~~~~l~s~s~d-----~~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~s~ 202 (362)
.|+|||.+|+..-.| |.|-|||.+.+ +.+.++. .|.-....+.+.+||+++..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~-t~GiGpHev~lm~DGrtlvv 178 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS-THGIGPHEVTLMADGRTLVV 178 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc-cCCcCcceeEEecCCcEEEE
Confidence 489999999986554 67999998743 3344443 45555677889999985543
No 385
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.00 E-value=12 Score=36.87 Aligned_cols=107 Identities=11% Similarity=0.145 Sum_probs=65.7
Q ss_pred cCCCEEEEEECCCcEEEEECCC-------c----eE-------EEeeeccCcccEEEEEEc--CCCcEE-EEeCCCeEEE
Q 044557 152 KDETLLYSVSWDRTIKIWRTSD-------F----KC-------LESITNAHDDAINAVALS--DDGDVY-TGSADKKIKV 210 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~-------~----~~-------~~~~~~~h~~~v~~v~~~--~~~~~~-s~~~dg~i~i 210 (362)
.+..+|+.|.+||.|.+|.+++ . +. ...+.......++++++. ...+++ +++....|.|
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 3557899999999999997632 1 00 001111234578999998 666655 4555567888
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecC-----CC-EEEEEcCCCcEEEEec
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCD-----GS-VLYSGACDRSIIVWEK 259 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-----~~-~l~s~~~d~~i~~wd~ 259 (362)
|-............ -..|...|.+|+|-++ |. .|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 75543211111111 1124556888998763 22 7888999999998887
No 386
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.77 E-value=10 Score=37.86 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=49.8
Q ss_pred cEEEEEEcCCCcE-EEEeCCCeEEEEeCC---------CCCCccee--e---hh--hhccccceeEEEEecC---CCEEE
Q 044557 187 AINAVALSDDGDV-YTGSADKKIKVWRRS---------PGNKKHSL--V---DV--LERHNSGINALALSCD---GSVLY 246 (362)
Q Consensus 187 ~v~~v~~~~~~~~-~s~~~dg~i~iw~~~---------~~~~~~~~--~---~~--~~~h~~~v~~i~~s~~---~~~l~ 246 (362)
.|..|.++|+|.+ +..|..|.+.+.=.. .+.....+ . .. ...+...|..+.|+|. +.+|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 5788899999984 445555543332111 11110000 0 00 1123467889999985 58999
Q ss_pred EEcCCCcEEEEeccCCCCcEE
Q 044557 247 SGACDRSIIVWEKEEDDGNIL 267 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~ 267 (362)
.=..|+++|+||+........
T Consensus 166 vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred EEecCCEEEEEecCCCCCCeE
Confidence 999999999999976554443
No 387
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.71 E-value=0.5 Score=46.59 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=58.2
Q ss_pred ecCceeEEEEec-CCCEEEEEECCCcEEEEECCC--ceEEE----eeeccCcccEEEEEEcC---CCc-EEEEeCCCeEE
Q 044557 141 HVDAVSALALTK-DETLLYSVSWDRTIKIWRTSD--FKCLE----SITNAHDDAINAVALSD---DGD-VYTGSADKKIK 209 (362)
Q Consensus 141 h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~--~~~~~----~~~~~h~~~v~~v~~~~---~~~-~~s~~~dg~i~ 209 (362)
..+.+..+.|.. +...+. -.-|.+.|||+.- ++... +........+.-|.|+| +.. +..+-.+++|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 345566666632 111111 2236788998753 33222 12222333455566654 222 33455677888
Q ss_pred EEeCCCCCCcceeehhhhccccceeEEE-----------EecCCCEEEEEcCCCcEEEEec
Q 044557 210 VWRRSPGNKKHSLVDVLERHNSGINALA-----------LSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~~~v~~i~-----------~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
+....... ...+..|...+..++ .||||..++.++.||.+++|..
T Consensus 209 lL~~~ra~-----~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 209 LLNINRAL-----RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred EeeechHH-----HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 86554332 133444666555444 4677777777777777777743
No 388
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.62 E-value=1.9 Score=38.68 Aligned_cols=108 Identities=20% Similarity=0.237 Sum_probs=56.8
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceE---EEee---eccCcccEEEEEEcCC----CcEEEEeC-------C-
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKC---LESI---TNAHDDAINAVALSDD----GDVYTGSA-------D- 205 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~---~~~h~~~v~~v~~~~~----~~~~s~~~-------d- 205 (362)
..+.|+|.||+++|++ ...|.|++++ ..+.. +..+ ..........++++|+ +.++.... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999988775 5699999999 33332 2222 1123446789999984 55443222 1
Q ss_pred -CeEEEEeCCCCC----Ccceeehhhhc---cccceeEEEEecCCCEEEEEcCCCc
Q 044557 206 -KKIKVWRRSPGN----KKHSLVDVLER---HNSGINALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 206 -g~i~iw~~~~~~----~~~~~~~~~~~---h~~~v~~i~~s~~~~~l~s~~~d~~ 253 (362)
..|.-|...... ....++..+.. ....-..|.|.|||.+.++.+..+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 234445443331 01111111111 1223456999999977776665443
No 389
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.13 E-value=10 Score=33.50 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=78.8
Q ss_pred CCcEEEEECCCceEEEeeecc----CcccEEEEEEcCCCcEEEEeCCC----------eEEEEeCCCCCCcceeehhhhc
Q 044557 163 DRTIKIWRTSDFKCLESITNA----HDDAINAVALSDDGDVYTGSADK----------KIKVWRRSPGNKKHSLVDVLER 228 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~~s~~~dg----------~i~iw~~~~~~~~~~~~~~~~~ 228 (362)
+.-+.+++.+.+..+..+... -....+.+...|+|.+..+...+ .=.+|-+...... ......
T Consensus 84 ~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~---~~l~~~ 160 (307)
T COG3386 84 EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV---VRLLDD 160 (307)
T ss_pred ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE---EEeecC
Confidence 455666676544432222111 11234567788888877654441 1134433321111 112222
Q ss_pred cccceeEEEEecCCCEEEEEcCC-CcEEEEeccCCCC---cEEEEEeecCccceeEEEEEe--CCeEEEeeCCC-cEEEe
Q 044557 229 HNSGINALALSCDGSVLYSGACD-RSIIVWEKEEDDG---NILVVGALRGHTKSILCMAVV--SDLVCSGSADK-TIRIW 301 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d-~~i~~wd~~~~~~---~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~-~i~~W 301 (362)
+-..-+.|+||||++.|+.+... +.|.-|++..... ..........+.+..-.++.. +.+-+++-.+| .|.+|
T Consensus 161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence 33345689999999888877654 7788887652111 000011111223333334443 23333333333 78888
Q ss_pred eCCCCceeeeeEecCCCCcEEEEEee
Q 044557 302 RGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 302 ~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
+- .++++..+.-....+++++|-
T Consensus 241 ~p---dG~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 241 NP---DGKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CC---CCcEEEEEECCCCCCccceEe
Confidence 63 245566655555677777774
No 390
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.08 E-value=1.3 Score=26.05 Aligned_cols=30 Identities=7% Similarity=0.103 Sum_probs=25.0
Q ss_pred ceeEEEEecCCC---EEEEEcCCCcEEEEeccC
Q 044557 232 GINALALSCDGS---VLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 232 ~v~~i~~s~~~~---~l~s~~~d~~i~~wd~~~ 261 (362)
.|.++.|+|++. +|+-+-.-+.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 588999998554 888888889999999985
No 391
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.06 E-value=3.5 Score=37.82 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=44.8
Q ss_pred ccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeC
Q 044557 230 NSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 230 ~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
.++|.+|.||+|++.|+.--.|++|-+++....+.........+.-+..|..+.|..+.=+.-=.|..+.+|.+
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v 139 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQV 139 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEE
Confidence 46899999999999999999999999998854333222211222223345556665432111122334666653
No 392
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.72 E-value=9.5 Score=32.40 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=67.8
Q ss_pred CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccce
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
..+++.||-.+.+.--|..+++..-.-.. ...+.+-+.--+..++.|...|.+.+.+..+++....... . ..|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~----~~v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-L----ETV 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee-h----hhh
Confidence 35677888888888888888876543221 2334433333234478899999999999988864433211 1 112
Q ss_pred e-EEEEecCCCEEEEEcCCCcEEEEeccCC
Q 044557 234 N-ALALSCDGSVLYSGACDRSIIVWEKEED 262 (362)
Q Consensus 234 ~-~i~~s~~~~~l~s~~~d~~i~~wd~~~~ 262 (362)
. .....+++..++.|+.|++.+.-|..+.
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEeccccc
Confidence 1 2345679999999999999998887653
No 393
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.57 E-value=11 Score=32.64 Aligned_cols=241 Identities=18% Similarity=0.236 Sum_probs=117.5
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
.++.|+.|..+| +.+++...... . .. + .....|..+...++ .++.- .|+.+.++++..-.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~-~-~~------i--~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK-P-TR------I--LKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc-c-ee------E--eecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccc
Confidence 477899998888 88888722111 1 00 0 11223666666653 34333 46999999987543221110
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEE---EecCCCEEEEEECCCcEEEEECCC----c-eEE
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALA---LTKDETLLYSVSWDRTIKIWRTSD----F-KCL 177 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~~~l~s~s~d~~i~iwd~~~----~-~~~ 177 (362)
. . ..+..... ... ......+...+ -......|+.+ ..++|.+|.... + +..
T Consensus 74 ~-~-~~~~~~~~---------~~~---------~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 74 P-L-AFPKSRSL---------PTK---------LPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred c-c-cccccccc---------ccc---------ccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCccccccee
Confidence 0 0 00000000 000 00111122222 12223344444 456888887654 2 445
Q ss_pred EeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhh---------ccccceeEEEEecCCCEEEEE
Q 044557 178 ESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE---------RHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 178 ~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~---------~h~~~v~~i~~s~~~~~l~s~ 248 (362)
+++.. .+.+.+++|.+ +.++.|.. +...+.|+.++... .+...-. ....++..+.+ +++.+|++.
T Consensus 133 ke~~l--p~~~~~i~~~~-~~i~v~~~-~~f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~ 206 (275)
T PF00780_consen 133 KEISL--PDPPSSIAFLG-NKICVGTS-KGFYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY 206 (275)
T ss_pred EEEEc--CCCcEEEEEeC-CEEEEEeC-CceEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe
Confidence 55543 36788888883 33555544 45778888765432 2211100 11123333333 345666653
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecC
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEG 316 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~ 316 (362)
|..-.+.|... +... ...+. ....+..+.+...+++..+.+ .|.+|+... +.+++++.+
T Consensus 207 --~~~g~fv~~~G-~~~r--~~~i~-W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~--~~lvQ~i~~ 265 (275)
T PF00780_consen 207 --DNIGVFVNKNG-EPSR--KSTIQ-WSSAPQSVAYSSPYLIAFSSN-SIEVRSLET--GELVQTIPL 265 (275)
T ss_pred --cceEEEEcCCC-CcCc--ccEEE-cCCchhEEEEECCEEEEECCC-EEEEEECcC--CcEEEEEEC
Confidence 33344444432 2111 11111 233566777877788777775 599999654 455666653
No 394
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.08 E-value=1.7 Score=44.15 Aligned_cols=138 Identities=10% Similarity=0.043 Sum_probs=79.6
Q ss_pred ceeEEEEecCCCEEEE--EECCCcEEEEECCCceEEEe-----ee---ccCcc--cEEEEEEcCCC--cEEEEeCCCeEE
Q 044557 144 AVSALALTKDETLLYS--VSWDRTIKIWRTSDFKCLES-----IT---NAHDD--AINAVALSDDG--DVYTGSADKKIK 209 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s--~s~d~~i~iwd~~~~~~~~~-----~~---~~h~~--~v~~v~~~~~~--~~~s~~~dg~i~ 209 (362)
.+.-+...+|+...++ .+.+-.|..||+++...... +. ...+. ...++.|+|.- ..+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3444555667655443 33444788999876432110 00 01111 24566777754 356778899999
Q ss_pred EEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec-CccceeEEEEEeCC
Q 044557 210 VWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR-GHTKSILCMAVVSD 287 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~ 287 (362)
+..+.-.... . .. ..-...+++++|+|-|+.++.|-..|++.-|.-.-+.. . .+.... ....+|+|+.|...
T Consensus 182 V~~~~~~~~~--v-~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-~-~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 182 VKSTKQLAQN--V-TS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-S-EIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhh--h-cc-cCcccceeeEEeccccceeeEecCCCeEEEeeccccee-e-cccCCCcCCCcceeEEEEecc
Confidence 8865432111 1 00 01345689999999999999999999998886432110 0 111111 12467889988654
No 395
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.96 E-value=12 Score=32.43 Aligned_cols=201 Identities=12% Similarity=0.167 Sum_probs=110.1
Q ss_pred cceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCC
Q 044557 20 SYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQE 99 (362)
Q Consensus 20 ~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~ 99 (362)
+.+..+.+++++..-+.++.-+++.|+.+........+.. -.+--.++...++.++.+..|.-+-+.|+....
T Consensus 87 ~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-------t~gyaygv~vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 87 DLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLN-------TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhheeEecccEEEEEcCCCceEEEeccCCCCcceecccc-------CCceEEEEEecCCEEEEeeccCcEEEEECCCCC
Confidence 3445566678899999999999999998755433222211 013445667788888888877667778875432
Q ss_pred CCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEe
Q 044557 100 PDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLES 179 (362)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 179 (362)
. +........+. .....++.+ |++-+.+..|+-+.|-|+.......-
T Consensus 160 s--P~lagrya~~~-----------------------------~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvl 206 (370)
T COG5276 160 S--PQLAGRYALPG-----------------------------GDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVL 206 (370)
T ss_pred C--ceeeeeeccCC-----------------------------CCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeE
Confidence 1 11111111100 011223344 67788888999999999876543221
Q ss_pred eeccCcc-cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 180 ITNAHDD-AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 180 ~~~~h~~-~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
+..-..+ .+.++..+++-.+++.... -+.+-|....... +..... ....++..-.+.--+++.+.+..+.-+-+-|
T Consensus 207 i~~~n~g~g~~sv~vsdnr~y~vvy~e-gvlivd~s~~ssp-~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~id 283 (370)
T COG5276 207 IGSYNTGPGTYSVSVSDNRAYLVVYDE-GVLIVDVSGPSSP-TVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIID 283 (370)
T ss_pred EEEEecCCceEEEEecCCeeEEEEccc-ceEEEecCCCCCc-eEeecc-ccCCcccccceecccceeeeeccccCceeEe
Confidence 1111223 5777777776655554433 3555565443321 121111 1222222112233466777776666666677
Q ss_pred ccCCC
Q 044557 259 KEEDD 263 (362)
Q Consensus 259 ~~~~~ 263 (362)
..++.
T Consensus 284 isnp~ 288 (370)
T COG5276 284 ISNPP 288 (370)
T ss_pred ccCCC
Confidence 66543
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.84 E-value=23 Score=35.43 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=49.3
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCC----------ceE---EEe-------eeccCcccEEEEEEcCCC----cE
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSD----------FKC---LES-------ITNAHDDAINAVALSDDG----DV 199 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~----------~~~---~~~-------~~~~h~~~v~~v~~~~~~----~~ 199 (362)
.|.-+.++|+|++|+..|..+-+ |-.+.. ++. .+. +...+...|..+.|+|.+ .+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 47788899999999988875544 433321 111 111 112334578899999864 48
Q ss_pred EEEeCCCeEEEEeCCCCC
Q 044557 200 YTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 200 ~s~~~dg~i~iw~~~~~~ 217 (362)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 888999999999987543
No 397
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=89.67 E-value=14 Score=32.69 Aligned_cols=135 Identities=14% Similarity=0.212 Sum_probs=72.3
Q ss_pred eEEEEecCCCEEEEEEC-----C----CcEEEEECC-CceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCeEEEEeC
Q 044557 146 SALALTKDETLLYSVSW-----D----RTIKIWRTS-DFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKKIKVWRR 213 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~-----d----~~i~iwd~~-~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~i~iw~~ 213 (362)
+...+.|+|.+.++... . ..=.+|.+. .+...+.+ ..+-..-+.++|||+++ ++ +=+..+.|.-|++
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-cCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 34555666665554333 0 111455554 34443333 24445568899999996 44 4455578888877
Q ss_pred CC--CCCcce-eehhhhccccceeEEEEecCCCEEEEEcCCC-cEEEEeccCCCCcEEEEEeecCccceeEEEEEeC
Q 044557 214 SP--GNKKHS-LVDVLERHNSGINALALSCDGSVLYSGACDR-SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 214 ~~--~~~~~~-~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 286 (362)
.. +..... .........+..-.++...+|.+-+++-..| .|..|+.. ++ .+....-....+.+++|.+
T Consensus 193 d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~----l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK----LLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc----EEEEEECCCCCCccceEeC
Confidence 53 111110 0111112234444566667777765555554 88889865 22 2333334446678888865
No 398
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=89.44 E-value=2.8 Score=38.88 Aligned_cols=108 Identities=20% Similarity=0.161 Sum_probs=58.5
Q ss_pred eEEEEecCCCEEE-EEECCCc--EEEEECCCceEEEeeeccCcccEE-EEEEcCCCc--EEEEeCCCeEEEE--eCCCCC
Q 044557 146 SALALTKDETLLY-SVSWDRT--IKIWRTSDFKCLESITNAHDDAIN-AVALSDDGD--VYTGSADKKIKVW--RRSPGN 217 (362)
Q Consensus 146 ~~~~~~~~~~~l~-s~s~d~~--i~iwd~~~~~~~~~~~~~h~~~v~-~v~~~~~~~--~~s~~~dg~i~iw--~~~~~~ 217 (362)
..-+|+|||+.|+ +...|+. |.+.|+..... ..+.. ...+. .=.|+|+|+ +++.+..|.-.|| +.+...
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTN--GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eeccc--CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 3457899998654 5566775 45556666553 33332 22222 335889997 4456666654554 554332
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCC-Cc--EEEEeccC
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACD-RS--IIVWEKEE 261 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-~~--i~~wd~~~ 261 (362)
. ..+.... -.. ..-.|+|||++|+..+.. |. |.+.|+.+
T Consensus 318 ~-~riT~~~--~~~--~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 318 V-TRLTFSG--GGN--SNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred e-eEeeccC--CCC--cCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 2 2221111 111 155789999998877643 44 44455443
No 399
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.08 E-value=16 Score=32.57 Aligned_cols=197 Identities=14% Similarity=0.128 Sum_probs=102.5
Q ss_pred EEEecCCCEEEEE--ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCC-cceeeh
Q 044557 148 LALTKDETLLYSV--SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNK-KHSLVD 224 (362)
Q Consensus 148 ~~~~~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~-~~~~~~ 224 (362)
++++.|+++++.. +--..|.|-|+...+.+.++..+ + ...+-=.++..|.+-+.||.+.-..++...+ ..+...
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G-C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G-CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S-EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C-EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence 4677888877664 45567889999998888776532 1 1111112233488888999888888774332 222111
Q ss_pred hhhccccce-eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCc----------cceeEEEEEeC--Ce-EE
Q 044557 225 VLERHNSGI-NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGH----------TKSILCMAVVS--DL-VC 290 (362)
Q Consensus 225 ~~~~h~~~v-~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h----------~~~v~~~~~~~--~~-~~ 290 (362)
.+..-..++ ..-++...+..++=-+..|.|+--|+..... .....+.-- .+.-.-+++.. +. ++
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~--~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA--KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE--EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc--cccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 221112222 2334444555555577888888877764331 222222110 01112234432 22 11
Q ss_pred E-------eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEE-ecCCCCcEEEEeccc
Q 044557 291 S-------GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC-SGSLDCDIKVWQISF 358 (362)
Q Consensus 291 s-------~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~s~D~~i~~W~~~~ 358 (362)
- .-.|..=.||-....+.+.+..+.. ...+.+++++.+.+ .+|+ ....|+.+.+||...
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~--------P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDK--------PLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS---------EEEEEETTTTEEEEEETTT
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCC--------cEEEEEcCCCCeEEEEeCcC
Confidence 1 1245556677443444566666652 23577888876532 3454 345689999999853
No 400
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.04 E-value=14 Score=31.73 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=70.3
Q ss_pred eeEEEEecCCCEEEEEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee
Q 044557 145 VSALALTKDETLLYSVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
...+.|..++.++-+.+.-| .|+.+|+.+++.+..........-..++...+.-+.-.-.++...+||..+-+...++
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 56788877888888888776 7999999999877665544444555666664432334557889999998765433222
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
. ....-..++ .||+.|+.......++++|..+
T Consensus 127 ~-----y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 127 P-----YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp E------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT
T ss_pred e-----cCCcceEEE--cCCCEEEEECCccceEEECCcc
Confidence 1 122334444 5788888887788899998654
No 401
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.76 E-value=21 Score=34.90 Aligned_cols=108 Identities=12% Similarity=0.232 Sum_probs=64.7
Q ss_pred EEEcCCCcEEEEeCC-CeEEEEeCCCCCCcceeehhhhccccceeEEEEe--cCCCEEEEEcCCCcEEEEecc-----CC
Q 044557 191 VALSDDGDVYTGSAD-KKIKVWRRSPGNKKHSLVDVLERHNSGINALALS--CDGSVLYSGACDRSIIVWEKE-----ED 262 (362)
Q Consensus 191 v~~~~~~~~~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s--~~~~~l~s~~~d~~i~~wd~~-----~~ 262 (362)
+.-+.-++++....+ .++.|||...+.. .....+ .....|..+.|. |||+.+++-|..+.|.+|... ..
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~l--E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVL--EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEE--EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 333344555555444 4799999876542 122222 346789999985 689999999999999998642 11
Q ss_pred CCcEEEEE--eecCcc-ceeEEEEEeCC-eEEEeeCCCcEEEee
Q 044557 263 DGNILVVG--ALRGHT-KSILCMAVVSD-LVCSGSADKTIRIWR 302 (362)
Q Consensus 263 ~~~~~~~~--~~~~h~-~~v~~~~~~~~-~~~s~s~D~~i~~W~ 302 (362)
.+....+. .+..|+ .+|.+..|.++ .++.|+ ++.+.+++
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFD 154 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEEC
Confidence 11111111 123344 46777777655 444444 35677776
No 402
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=88.20 E-value=20 Score=32.48 Aligned_cols=179 Identities=12% Similarity=0.071 Sum_probs=84.9
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccC----------------cccEEEEEEcCCCc-EEEE-eC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH----------------DDAINAVALSDDGD-VYTG-SA 204 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h----------------~~~v~~v~~~~~~~-~~s~-~~ 204 (362)
..+....|+|+|+.+|-.. ++.|.+++..++...+--..+. -+.-..+.|||+++ |+.. -.
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 4567788999999988776 6899999887765433211110 01124577888886 3321 12
Q ss_pred CCeEE-----------------------------------EEeCCCCCCcc-eeehhhhccccceeEEEEecCCCEEEEE
Q 044557 205 DKKIK-----------------------------------VWRRSPGNKKH-SLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 205 dg~i~-----------------------------------iw~~~~~~~~~-~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
+..|+ |+++.+++... ........-...+..+.|++++..|+..
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 22222 23333332110 0000112234457788899988844433
Q ss_pred c--CCC---cEEEEeccCCCCcEEEEEeecCccceeEEEEEe-C---CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCC
Q 044557 249 A--CDR---SIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-S---DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG 319 (362)
Q Consensus 249 ~--~d~---~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~---~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~ 319 (362)
- .+. .+.++|..++...........+....-....+. + .++.....||--.|+-...... ....|....-
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~-~~~~lT~G~~ 280 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG-KPRQLTSGDW 280 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS-EEEESS-SSS
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc-ceeccccCce
Confidence 2 232 255666665444333322222222222233332 2 2555555788777775433222 2334554455
Q ss_pred cEEE
Q 044557 320 PVKC 323 (362)
Q Consensus 320 ~v~~ 323 (362)
.|..
T Consensus 281 ~V~~ 284 (353)
T PF00930_consen 281 EVTS 284 (353)
T ss_dssp -EEE
T ss_pred eecc
Confidence 5655
No 403
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.79 E-value=26 Score=33.40 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=40.2
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-ceeEEEecCCcEEEEecCCCC
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-DKLFSAHQDHKIRVWKINNQE 99 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~s~~~dg~i~~w~~~~~~ 99 (362)
.+..++.++.|+.+.-.|..+.+............ ..........+.... +.++.++.++.|..+|.++++
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~-~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD-RGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc-ccccccccCCcEEccCCeEEEecCCCeEEEEECCCCC
Confidence 45667778888999988987654322211110000 000000001123334 788889999999999987765
No 404
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.73 E-value=23 Score=32.80 Aligned_cols=104 Identities=14% Similarity=0.210 Sum_probs=59.4
Q ss_pred cEEEEeCCCeEEEEeCCCCCCcc--eeehhhhccccceeEEEEec----CCCEEEEEcCCCcEEEEeccCCCCc-----E
Q 044557 198 DVYTGSADKKIKVWRRSPGNKKH--SLVDVLERHNSGINALALSC----DGSVLYSGACDRSIIVWEKEEDDGN-----I 266 (362)
Q Consensus 198 ~~~s~~~dg~i~iw~~~~~~~~~--~~~~~~~~h~~~v~~i~~s~----~~~~l~s~~~d~~i~~wd~~~~~~~-----~ 266 (362)
+++.|+..|.++||+........ -+.. ..-..||-.+..-+ .....++--.-+.+.+|.+....+. .
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE--~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLE--TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEE--EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 48899999999999985433211 1111 12346777776532 2233333466778888887432222 2
Q ss_pred EEEEeecCccceeE--EE---EEe----CCeEEEeeCCCcEEEeeC
Q 044557 267 LVVGALRGHTKSIL--CM---AVV----SDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 267 ~~~~~~~~h~~~v~--~~---~~~----~~~~~s~s~D~~i~~W~~ 303 (362)
..+..+..|.-.-. .+ .|. .++++.-|-||.+.+++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feq 162 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQ 162 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeC
Confidence 22233333432222 22 221 258999999999999984
No 405
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.62 E-value=18 Score=31.48 Aligned_cols=113 Identities=8% Similarity=0.194 Sum_probs=64.7
Q ss_pred CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc------CCCcEEEEeccCCCCcEEEEEeecC-----
Q 044557 206 KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA------CDRSIIVWEKEEDDGNILVVGALRG----- 274 (362)
Q Consensus 206 g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~----- 274 (362)
..|++||..+.. ....-..-.+.|+++.|..+.+.++.|. ....+..||..+.. + ..+.+
T Consensus 16 ~~lC~yd~~~~q----W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w---~~~~~~~s~~ 86 (281)
T PF12768_consen 16 PGLCLYDTDNSQ----WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--W---SSLGGGSSNS 86 (281)
T ss_pred CEEEEEECCCCE----eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--e---eecCCccccc
Confidence 468899876542 2222223457899999987767777664 34567788886532 2 12222
Q ss_pred ccceeEEEEEe---CC-eEEEee-CCC--cEEEeeCCCCceeeeeE-ecCCCCcEEEEEeeec
Q 044557 275 HTKSILCMAVV---SD-LVCSGS-ADK--TIRIWRGIDRNYTCLAV-LEGHRGPVKCLAAAID 329 (362)
Q Consensus 275 h~~~v~~~~~~---~~-~~~s~s-~D~--~i~~W~~~~~~~~~~~~-l~~h~~~v~~~~~~~~ 329 (362)
-.+.|..+.+. .+ +.+.|. .++ .|..|| ..++..+.. +.+-...|..+.+.+-
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccccccCCCCEEEEEEEEec
Confidence 23566666663 22 444433 333 455665 445555544 3444667888877765
No 406
>PRK13684 Ycf48-like protein; Provisional
Probab=87.27 E-value=22 Score=31.96 Aligned_cols=157 Identities=10% Similarity=0.005 Sum_probs=78.2
Q ss_pred cccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC
Q 044557 185 DDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG 264 (362)
Q Consensus 185 ~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 264 (362)
...+..+.+.|++.++..+..|.+..- .+.+.. +.......-...++++.+.++++.++.+ ..|.+++=+...+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~--tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~- 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQT--AWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE- 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCC--eEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC-
Confidence 456888999999887777777866532 112211 1111112234578889999998877665 45766432222211
Q ss_pred cEEEEEee-cCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEE
Q 044557 265 NILVVGAL-RGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLV 342 (362)
Q Consensus 265 ~~~~~~~~-~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l 342 (362)
.......- ..-...+..+.+.++ .+..++.+|.|..=.-...++..+....+-......+.|..+. ..+
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~---------~~~ 317 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE---------KGF 317 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCC---------ceE
Confidence 11111100 001123566666543 4556667776543210112232221112222356666665332 234
Q ss_pred EecCCCCcEEEEec
Q 044557 343 CSGSLDCDIKVWQI 356 (362)
Q Consensus 343 ~s~s~D~~i~~W~~ 356 (362)
+ .+..|.|.-|+-
T Consensus 318 ~-~G~~G~il~~~~ 330 (334)
T PRK13684 318 V-LGQRGVLLRYVG 330 (334)
T ss_pred E-ECCCceEEEecC
Confidence 4 456788877653
No 407
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.71 E-value=5.3 Score=33.36 Aligned_cols=63 Identities=11% Similarity=0.221 Sum_probs=45.0
Q ss_pred CcEEEEeCCCeEEEEeCCCCCCccee---ehhhh-------ccccceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 197 GDVYTGSADKKIKVWRRSPGNKKHSL---VDVLE-------RHNSGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 197 ~~~~s~~~dg~i~iw~~~~~~~~~~~---~~~~~-------~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
..+++.+.+|.+.+||+.+.+..... ...+. .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 34888899999999999876532221 22232 3456788889998898887765 4778888865
No 408
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.26 E-value=11 Score=34.30 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=59.4
Q ss_pred CceeEEEEecCCCEEEEEE-----------CCC-cEEEEECCC--ce--EEEeeeccCcccEEEEEEcCCCcEEEEeCCC
Q 044557 143 DAVSALALTKDETLLYSVS-----------WDR-TIKIWRTSD--FK--CLESITNAHDDAINAVALSDDGDVYTGSADK 206 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s-----------~d~-~i~iwd~~~--~~--~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg 206 (362)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+... ......+++.++| ++.+....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~-l~~p~Gi~~~~~G-lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE-LSMVTGLAVAVGG-VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC-CCCccceeEecCC-EEEeCCCe
Confidence 3457889999999877653 223 677776432 22 12233322 2345788888888 66666554
Q ss_pred eEEEEeCCCCC----Ccceeehhhhc----cccceeEEEEecCCCEEEEEc
Q 044557 207 KIKVWRRSPGN----KKHSLVDVLER----HNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 207 ~i~iw~~~~~~----~~~~~~~~~~~----h~~~v~~i~~s~~~~~l~s~~ 249 (362)
..++.+..... ....+...+.. +......++|.|||.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44444543211 11122222322 234477899999998777555
No 409
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.26 E-value=18 Score=29.94 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.7
Q ss_pred ceeEEEecCCcEEEEecC
Q 044557 79 DKLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 79 ~~l~s~~~dg~i~~w~~~ 96 (362)
|.|+.+.....|.+|++.
T Consensus 29 d~Lfva~~g~~Vev~~l~ 46 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLE 46 (215)
T ss_pred ceEEEEcCCCEEEEEEcc
Confidence 778887888999999997
No 410
>PRK10115 protease 2; Provisional
Probab=85.85 E-value=40 Score=33.69 Aligned_cols=112 Identities=10% Similarity=0.087 Sum_probs=62.7
Q ss_pred ceeEEEEecCCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCC-----CeEEEE
Q 044557 144 AVSALALTKDETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSAD-----KKIKVW 211 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~d-----g~i~iw 211 (362)
.+..+.++||+++|+-+... -.|++-|+.+++.+.... .. .-..++|.+++. | ++...+ ..|..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 35667889999987765322 358888888776433221 11 114589998876 4 343322 367778
Q ss_pred eCCCCCCcceeehhhhcccccee-EEEEecCCCEEEEEcC---CCcEEEEecc
Q 044557 212 RRSPGNKKHSLVDVLERHNSGIN-ALALSCDGSVLYSGAC---DRSIIVWEKE 260 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~-~i~~s~~~~~l~s~~~---d~~i~~wd~~ 260 (362)
++.++...-.++.. ....... .+..+.|+++++..+. ++.+.+++..
T Consensus 205 ~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 88766322222221 1122222 3334558887664443 3568888854
No 411
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=85.64 E-value=16 Score=34.28 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=66.5
Q ss_pred cCCCEEEE-EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--------EEEEeCCCeEEEEeCCCCCCccee
Q 044557 152 KDETLLYS-VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--------VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 152 ~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--------~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.+.++++. |+.-..+.--|++.++.+..+.. |... -|.|.|..+ -+.|-++..|--.|..-.......
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~-~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDL-KDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeec-CCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 34555444 44555677778899999988863 4433 466777542 234545555544444322211111
Q ss_pred ehhhhccccceeEEEEe----cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 223 VDVLERHNSGINALALS----CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s----~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
. .....++.-.|+ -...+++.||..|.||+||.-.-+ .-..+++-...|..+...
T Consensus 554 ~----esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r----AKtalP~lG~aIk~idvt 612 (776)
T COG5167 554 V----ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR----AKTALPGLGDAIKHIDVT 612 (776)
T ss_pred e----eehhccccccccccccccCceEEEecCCCceeeehhhcch----hhhcCcccccceeeeEee
Confidence 0 111122222222 245799999999999999965321 112345555566665553
No 412
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=85.50 E-value=19 Score=32.29 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=35.6
Q ss_pred cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeEEEEecC
Q 044557 187 AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINALALSCD 241 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i~~s~~ 241 (362)
..++|+|.|+|+++.+-..|.|++++ ..+.....+. ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 35789999999988888899999998 3333211111 222234456788999994
No 413
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.16 E-value=31 Score=31.80 Aligned_cols=150 Identities=11% Similarity=0.010 Sum_probs=77.2
Q ss_pred EEEEEcCCCcEEEEeCCCeEEE-EeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcE-
Q 044557 189 NAVALSDDGDVYTGSADKKIKV-WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI- 266 (362)
Q Consensus 189 ~~v~~~~~~~~~s~~~dg~i~i-w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~- 266 (362)
..+..++++.++..+..|.+.. ||- +...-.. ........++.+.+.+++..++++ .+|.+ ++....+....
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~--~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQP--HNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCC--CCcceEE--ecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 3455667787777777775433 332 2110011 111224568889999998877765 55665 33333222110
Q ss_pred EEEEeecC--ccceeEEEEEeC-CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEE
Q 044557 267 LVVGALRG--HTKSILCMAVVS-DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343 (362)
Q Consensus 267 ~~~~~~~~--h~~~v~~~~~~~-~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 343 (362)
.......- -...+..+.+.+ +.+..++.+|.+....-..++++....-.+-......+.|.+++ +.++
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~---------~g~~ 386 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDK---------KGFV 386 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCC---------ceEE
Confidence 00111111 123467777754 46777778888776642233443332223334567788875432 2233
Q ss_pred ecCCCCcEEEE
Q 044557 344 SGSLDCDIKVW 354 (362)
Q Consensus 344 s~s~D~~i~~W 354 (362)
.+.+|.|.-|
T Consensus 387 -~G~~G~il~~ 396 (398)
T PLN00033 387 -LGNDGVLLRY 396 (398)
T ss_pred -EeCCcEEEEe
Confidence 4567887654
No 414
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=85.11 E-value=37 Score=32.60 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=67.3
Q ss_pred eeecCceeEEEEecC----CCEEEEEECCCcEEEEECCC-----ceEEEeee--ccCccc--EEEEEEcCCCcEEEEeCC
Q 044557 139 VHHVDAVSALALTKD----ETLLYSVSWDRTIKIWRTSD-----FKCLESIT--NAHDDA--INAVALSDDGDVYTGSAD 205 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~----~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~--~~h~~~--v~~v~~~~~~~~~s~~~d 205 (362)
.+..+.|..+.|.|- ..-|.+..-.+.|.||.+.. .+.+.... ....-+ -..+.|+|...+++.-..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 345566788888874 33566677789999998752 22221111 001111 134678888876554333
Q ss_pred CeE-EEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CCcEEEEecc
Q 044557 206 KKI-KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DRSIIVWEKE 260 (362)
Q Consensus 206 g~i-~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~ 260 (362)
..+ .++++...... ....+ ...+-|.|.+|.+||+.|+.+-. .=.-++||-.
T Consensus 133 ~dvSV~~sV~~d~sr--VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSR--VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCce--EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 333 34444433321 11122 24567999999999998876643 3345788853
No 415
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.02 E-value=12 Score=29.81 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=24.1
Q ss_pred ceeEEEEecCC------CEEEEEcCCCcEEEEeccC
Q 044557 232 GINALALSCDG------SVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 232 ~v~~i~~s~~~------~~l~s~~~d~~i~~wd~~~ 261 (362)
.|.+++|||-| ..|++-..++.+.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999954 4788888999999997653
No 416
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.34 E-value=25 Score=34.83 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=70.2
Q ss_pred ceeEEEEec--CCCEEEEEcCCCcEEEEeccC-------C----CC-c-EEEE---EeecCccceeEEEEEe--C--CeE
Q 044557 232 GINALALSC--DGSVLYSGACDRSIIVWEKEE-------D----DG-N-ILVV---GALRGHTKSILCMAVV--S--DLV 289 (362)
Q Consensus 232 ~v~~i~~s~--~~~~l~s~~~d~~i~~wd~~~-------~----~~-~-~~~~---~~~~~h~~~v~~~~~~--~--~~~ 289 (362)
.|+.|.+.. +...|+.+..||.|.+|..+. . +. . ...+ -.+. -...++.+++. . .+|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355555443 556899999999999997421 0 00 0 0000 0011 12356677765 2 367
Q ss_pred EEeeCCCcEEEeeCCC--CceeeeeEecCCCCcEEEEEeeecCCccCCCCCc-eEEEecCCCCcEEEEec
Q 044557 290 CSGSADKTIRIWRGID--RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTS-YLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 290 ~s~s~D~~i~~W~~~~--~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~-~~l~s~s~D~~i~~W~~ 356 (362)
|.++--..|.||-... ........ ..|...|-+++|.++... +.| .+|++++-.|++.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s-~~~~hNIP~VSFl~~~~d----~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPS-HQHSHNIPNVSFLDDDLD----PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccc-cccccCCCeeEeecCCCC----CccceEEEEEeccCcEEEEEE
Confidence 7777778898885321 11111111 136667999999876531 223 37888999999999887
No 417
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=82.91 E-value=38 Score=31.04 Aligned_cols=115 Identities=20% Similarity=0.318 Sum_probs=75.8
Q ss_pred ceeEEEEecCCCEEEEEEC---CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEE-EeCCCeEEEEeCCCCCC
Q 044557 144 AVSALALTKDETLLYSVSW---DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYT-GSADKKIKVWRRSPGNK 218 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~~~~~~ 218 (362)
....++++|+++.++.+.. ++++.+.|..+.+.......+ ..+ ..+++.|+|. ++. -..++.|.+.|......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v 194 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV 194 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce
Confidence 3467889999987777655 688999998888877764332 233 7899999997 443 44789999999665432
Q ss_pred cc-eeehhhhccccceeEEEEecCCCEEEEEcCC---CcEEEEeccC
Q 044557 219 KH-SLVDVLERHNSGINALALSCDGSVLYSGACD---RSIIVWEKEE 261 (362)
Q Consensus 219 ~~-~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~ 261 (362)
.. +........ ..-..+.++|+|..++..... +.+...|...
T Consensus 195 ~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 195 VRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred eccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 21 000011111 223568899999977766544 4787777764
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=82.74 E-value=45 Score=31.71 Aligned_cols=132 Identities=10% Similarity=0.031 Sum_probs=59.4
Q ss_pred cCCCEEEEEECC--CcEEEEECCCceEEE--eeeccCcccEEEEEEcCCCc-EEEEeCC---CeEEEEeCCCCCCcceee
Q 044557 152 KDETLLYSVSWD--RTIKIWRTSDFKCLE--SITNAHDDAINAVALSDDGD-VYTGSAD---KKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 152 ~~~~~l~s~s~d--~~i~iwd~~~~~~~~--~~~~~h~~~v~~v~~~~~~~-~~s~~~d---g~i~iw~~~~~~~~~~~~ 223 (362)
-++.+.+.||.+ ..+..||..+.+... .+..... -.+++. -+|+ ++.|+.+ ..+..||..+.. -...
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~--~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~ 391 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC--NPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQ--WQFG 391 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc--ccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCE--EEeC
Confidence 356666667654 357788876543222 1211111 112222 2466 4556544 347778876542 1111
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD 295 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D 295 (362)
..+....... ++ ..-+|+..+.|+ .+-+||..++ .+..+..+.............+.+.+.|+.+
T Consensus 392 ~~m~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 392 PSTYYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSN--TWTLIDDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CCCCCccccc-eE-EEECCEEEEECC---ceEEecCCCC--cEeEcCCCCCCccccEEEEECCEEEEECCcC
Confidence 1111111111 11 233566666664 4677887643 3333333332222222333444566666654
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=82.28 E-value=39 Score=30.74 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=37.0
Q ss_pred cEEEEEEcCCCcEEEEeC------------CC-eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc
Q 044557 187 AINAVALSDDGDVYTGSA------------DK-KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS 253 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~------------dg-~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~ 253 (362)
....|+|.++|+++++.. .+ .|.+++-.++.........+...-.....+++.++| |+.+..+..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 456788888888766532 23 677775443322111111111112235678888888 555555543
Q ss_pred EEEEec
Q 044557 254 IIVWEK 259 (362)
Q Consensus 254 i~~wd~ 259 (362)
.++.|.
T Consensus 93 ~~~~d~ 98 (367)
T TIGR02604 93 LFLRDK 98 (367)
T ss_pred EEEeCC
Confidence 334454
No 420
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.42 E-value=48 Score=31.16 Aligned_cols=109 Identities=21% Similarity=0.198 Sum_probs=61.2
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceE--EEe---ee-ccCcccEEEEEEcCCC-------cEEEE-eC--
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC--LES---IT-NAHDDAINAVALSDDG-------DVYTG-SA-- 204 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~---~~-~~h~~~v~~v~~~~~~-------~~~s~-~~-- 204 (362)
.......|+|.||+++|++--..|.|++++..+... +.. +. ..-......|+++|+- .++.. +.
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345678899999998887765569999998654432 111 11 1124567889999874 23322 11
Q ss_pred -------CCeEEEEeCCCCC----Ccceeehhh---hccccceeEEEEecCCCEEEEEcCC
Q 044557 205 -------DKKIKVWRRSPGN----KKHSLVDVL---ERHNSGINALALSCDGSVLYSGACD 251 (362)
Q Consensus 205 -------dg~i~iw~~~~~~----~~~~~~~~~---~~h~~~v~~i~~s~~~~~l~s~~~d 251 (362)
...|.-|.+.... ....++..+ ..|. -..|+|.|||.++++-+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 2345555553211 111222111 1233 3468899999877755543
No 421
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.09 E-value=4 Score=39.44 Aligned_cols=36 Identities=36% Similarity=0.782 Sum_probs=27.8
Q ss_pred eeEEEEec----CCCEEEEEECCCcEEEEECCCceEEEee
Q 044557 145 VSALALTK----DETLLYSVSWDRTIKIWRTSDFKCLESI 180 (362)
Q Consensus 145 v~~~~~~~----~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 180 (362)
+.++++++ +..+|++.+.|+++|+||+.+++++...
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 34445544 6789999999999999999999986654
No 422
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=80.40 E-value=30 Score=32.06 Aligned_cols=38 Identities=5% Similarity=-0.074 Sum_probs=31.3
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEee
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI 180 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 180 (362)
..+.++..+|++++.|+...=|+|.++|+.++..++-+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 45788999999998888777799999999987766544
No 423
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.38 E-value=33 Score=32.45 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=47.0
Q ss_pred cEEEEEEcCCCc-EEEEeCCCeEEEEe-----C----CCCCCccee-----ehhh--hccccceeEEEEecCC---CEEE
Q 044557 187 AINAVALSDDGD-VYTGSADKKIKVWR-----R----SPGNKKHSL-----VDVL--ERHNSGINALALSCDG---SVLY 246 (362)
Q Consensus 187 ~v~~v~~~~~~~-~~s~~~dg~i~iw~-----~----~~~~~~~~~-----~~~~--~~h~~~v~~i~~s~~~---~~l~ 246 (362)
.|..+..++.|. ++-.+.+|.+.++= . ++++..-.+ -..+ ....-.+..++|+|+. .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 466777888886 56677888776653 1 122111100 0000 1122346678999975 6888
Q ss_pred EEcCCCcEEEEeccCC
Q 044557 247 SGACDRSIIVWEKEED 262 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~ 262 (362)
.-+.|+.||+||+.+.
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 8889999999998754
No 424
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=79.88 E-value=37 Score=28.97 Aligned_cols=207 Identities=11% Similarity=0.140 Sum_probs=94.8
Q ss_pred ecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce-eEEEe-cCC
Q 044557 14 TLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK-LFSAH-QDH 88 (362)
Q Consensus 14 tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-l~s~~-~dg 88 (362)
.|.|=...+..|++. +.+++.....+.|.-.+.+. ...... -..+.+....|...++. ++... .++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G---~vlr~i------~l~g~~D~EgI~y~g~~~~vl~~Er~~ 86 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG---KVLRRI------PLDGFGDYEGITYLGNGRYVLSEERDQ 86 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEE------E-SS-SSEEEEEE-STTEEEEEETTTT
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC---CEEEEE------eCCCCCCceeEEEECCCEEEEEEcCCC
Confidence 567777789999995 44777777888886666532 111111 01123456666665544 44444 377
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
.+.++++.......+. .....+ .......+...+..++|+|.++.|+.+-+..-.+|
T Consensus 87 ~L~~~~~~~~~~~~~~-~~~~~~----------------------~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDR-ADVQKI----------------------SLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRL 143 (248)
T ss_dssp EEEEEEE----TT--E-EEEEEE----------------------E---S---SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred cEEEEEEeccccccch-hhceEE----------------------ecccccCCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence 8888877432211000 000000 00000123445789999999888888877777777
Q ss_pred EECCC---ceEEEee-------eccCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCCCCcceeehhhhc-c-----c
Q 044557 169 WRTSD---FKCLESI-------TNAHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPGNKKHSLVDVLER-H-----N 230 (362)
Q Consensus 169 wd~~~---~~~~~~~-------~~~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-h-----~ 230 (362)
|.+.. ...+... .......+.++++.|.. . ++....+..|.++|. .+..... .....+ | -
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~-~~L~~g~~gl~~~~ 221 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSS-LSLDRGFHGLSKDI 221 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEE-EE-STTGGG-SS--
T ss_pred EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEE-EEeCCcccCccccc
Confidence 76653 1111110 01123356788888764 4 455667788888884 3432221 111111 1 1
Q ss_pred cceeEEEEecCCCEEEEEcCCCcEE
Q 044557 231 SGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
...-.|+|.++|...+ .+.-+..+
T Consensus 222 ~QpEGIa~d~~G~LYI-vsEpNlfy 245 (248)
T PF06977_consen 222 PQPEGIAFDPDGNLYI-VSEPNLFY 245 (248)
T ss_dssp -SEEEEEE-TT--EEE-EETTTEEE
T ss_pred CCccEEEECCCCCEEE-EcCCceEE
Confidence 1245688888885444 44444333
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.66 E-value=36 Score=28.65 Aligned_cols=102 Identities=13% Similarity=0.219 Sum_probs=56.6
Q ss_pred EEEEEcCCCc--EEEEeCCCeEEEEe--CCCCCC--cceeehhhh----ccccceeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 189 NAVALSDDGD--VYTGSADKKIKVWR--RSPGNK--KHSLVDVLE----RHNSGINALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 189 ~~v~~~~~~~--~~s~~~dg~i~iw~--~~~~~~--~~~~~~~~~----~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
+.++|+.+.+ .++-+.+-+|.-|| ..++.. ...+....+ ++. ..-.+++..+|...++.-.-++|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCCcEEEEEecCcEEEEEC
Confidence 4566765554 45677788888887 444431 111111111 111 112344455677777777777888787
Q ss_pred ccCCCCcEEEEEeecCccceeEEEEEeCC----eEEEeeCC
Q 044557 259 KEEDDGNILVVGALRGHTKSILCMAVVSD----LVCSGSAD 295 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~s~s~D 295 (362)
..++. . +..++-.+.+|+|++|.+. +.+|+..+
T Consensus 240 p~tGK--~--L~eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 240 PTTGK--I--LLEIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred CCCCc--E--EEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 76533 2 3334445788999999753 45555543
No 426
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=79.26 E-value=40 Score=28.88 Aligned_cols=137 Identities=17% Similarity=0.142 Sum_probs=70.0
Q ss_pred cEEEEEEcCCCc-EEEEe-CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEe-ccCCC
Q 044557 187 AINAVALSDDGD-VYTGS-ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWE-KEEDD 263 (362)
Q Consensus 187 ~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd-~~~~~ 263 (362)
.+.+.++++++. ++... .++.-.+|-...+....... . ...+..-+|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---T--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---c--CCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 578899999997 43333 24433444333332221111 1 22577778999987777767666667763 22222
Q ss_pred CcEEEEEeecCccceeEEEEEeCC-----eEEEeeCCCcEEEeeCCC-Cce------eeeeEecCCCCcEEEEEeeec
Q 044557 264 GNILVVGALRGHTKSILCMAVVSD-----LVCSGSADKTIRIWRGID-RNY------TCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~-----~~~s~s~D~~i~~W~~~~-~~~------~~~~~l~~h~~~v~~~~~~~~ 329 (362)
.....+. ...-...|..+.++++ +++....++.|.+=-+.. ... ............+.+++|.++
T Consensus 100 ~~~~~v~-~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVD-WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred ceeEEec-ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 2222221 1111227999999876 233334455555543211 111 111222233457788888654
No 427
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=78.86 E-value=32 Score=31.90 Aligned_cols=91 Identities=22% Similarity=0.389 Sum_probs=54.9
Q ss_pred EEEEecCCCEEEEEcCCCcEEE---EeccC-C--CCcE--EEEEeecCcc-ceeE---EEEEe--------CC--eEEEe
Q 044557 235 ALALSCDGSVLYSGACDRSIIV---WEKEE-D--DGNI--LVVGALRGHT-KSIL---CMAVV--------SD--LVCSG 292 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~---wd~~~-~--~~~~--~~~~~~~~h~-~~v~---~~~~~--------~~--~~~s~ 292 (362)
.++.+|++..|+.|..+..+.+ |+... + .... ...+.+.... ..|+ |+.+. ++ .++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999988887765 64321 1 1111 1122232222 3454 44441 12 68999
Q ss_pred eCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeee
Q 044557 293 SADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 293 s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~ 328 (362)
-.+|.|++|.. ++.++..-.-|.++|..+.+..
T Consensus 86 ~ssG~vrfyte---~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE---NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec---cchHHHHHhcCccceEEEEecc
Confidence 99999999973 2334433334888898887754
No 428
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.66 E-value=35 Score=35.42 Aligned_cols=101 Identities=13% Similarity=0.016 Sum_probs=64.5
Q ss_pred ceeEEEEecCCC-EEEEEECCCcEEEEECCCceE-EEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDET-LLYSVSWDRTIKIWRTSDFKC-LESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~-~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
...++.|+|.-. ..+.+..|+.|++..+..... ...+ .....+++++|+|.|+ ++.|-..|++.-|...-.. .
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~--p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k- 232 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF--PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-K- 232 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhccc--CcccceeeEEeccccceeeEecCCCeEEEeecccce-e-
Confidence 345677777543 355677899999887654321 1211 3455789999999997 8899999999999754321 1
Q ss_pred eeehhhh-ccccceeEEEEecCCCEEEEE
Q 044557 221 SLVDVLE-RHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 221 ~~~~~~~-~h~~~v~~i~~s~~~~~l~s~ 248 (362)
..+.... .....|.+|+|-....++++-
T Consensus 233 ~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 233 SEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 1111111 125678999998777666643
No 429
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=78.33 E-value=4.9 Score=20.97 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=21.9
Q ss_pred ceeeeEecCcEEEEecCCCeEEEee
Q 044557 21 YVSSLALAGKFLYTGSSDNEVRSWD 45 (362)
Q Consensus 21 ~V~~l~~~~~~l~t~s~Dg~i~vWd 45 (362)
.|.+++...++++.+.+-+-+|+|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 5788999889999999999999983
No 430
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.73 E-value=48 Score=29.65 Aligned_cols=101 Identities=18% Similarity=0.312 Sum_probs=58.9
Q ss_pred eEEEEecCCCEEEEEECC------CcEEEEECCCceEEEeee--------------ccCcccEEEEEEcCCCc-EEEEeC
Q 044557 146 SALALTKDETLLYSVSWD------RTIKIWRTSDFKCLESIT--------------NAHDDAINAVALSDDGD-VYTGSA 204 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~--------------~~h~~~v~~v~~~~~~~-~~s~~~ 204 (362)
.++++.+++.++++.-.+ ..|.-++.. ++.+..+. ........+++++|+|+ ++++.+
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 466677888888776666 778888765 44333221 11344688999999998 665432
Q ss_pred -----CC--e-------EEEEeCCCCC---Ccceeehhhhc-----cccceeEEEEecCCCEEEE
Q 044557 205 -----DK--K-------IKVWRRSPGN---KKHSLVDVLER-----HNSGINALALSCDGSVLYS 247 (362)
Q Consensus 205 -----dg--~-------i~iw~~~~~~---~~~~~~~~~~~-----h~~~v~~i~~s~~~~~l~s 247 (362)
|+ . ++++...... ........+.. ....|+.+.+-+++++|+-
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 32 1 5565443321 12222222222 3456788888888876653
No 431
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.54 E-value=51 Score=34.78 Aligned_cols=140 Identities=13% Similarity=0.172 Sum_probs=76.7
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEc-CC-C-------cEEEEeCCCeEEEEeCCCCCCccee---eh--hhh
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALS-DD-G-------DVYTGSADKKIKVWRRSPGNKKHSL---VD--VLE 227 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~-~~-~-------~~~s~~~dg~i~iw~~~~~~~~~~~---~~--~~~ 227 (362)
-|+.+.+|+.++......+. +-+..|..|..- |. | .++..++--.|.++-+...+..... .. .+.
T Consensus 97 iDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 48999999999866555443 344556666542 21 1 2444555556777654332211110 00 011
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEecc----CCC----CcEE------------EEEeec-CccceeEEEEEeC
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKE----EDD----GNIL------------VVGALR-GHTKSILCMAVVS 286 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~----~~~----~~~~------------~~~~~~-~h~~~v~~~~~~~ 286 (362)
.....|+++....+|+.+++| .||. +|.+. ++- .... .+-.+. ++..+|..+..+.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 124457788866666665554 5554 44431 110 0000 011122 4566888888865
Q ss_pred C--eEEEeeCCCcEEEeeCCC
Q 044557 287 D--LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 287 ~--~~~s~s~D~~i~~W~~~~ 305 (362)
. .+.+-++.++|++|++..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 4 788999999999999643
No 432
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=76.76 E-value=37 Score=32.71 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=58.4
Q ss_pred CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEE----------EEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN----------AVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~----------~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
+..++.++.++.|.-.|..+++.+-.....-...+. .+++. +++++.++.|+.+.-.|..+++..-+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 446666777888999999988876544321111111 11222 3567788889999999988886432221
Q ss_pred hhhhccc--cceeE-EEEecCCCEEEEEc------CCCcEEEEeccCCC
Q 044557 224 DVLERHN--SGINA-LALSCDGSVLYSGA------CDRSIIVWEKEEDD 263 (362)
Q Consensus 224 ~~~~~h~--~~v~~-i~~s~~~~~l~s~~------~d~~i~~wd~~~~~ 263 (362)
...+. ..+++ -.+. ++ .++.+. .+|.|+.+|.++++
T Consensus 148 --~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 148 --NGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred --cccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCc
Confidence 11111 11211 1111 34 444443 26889888887654
No 433
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=76.23 E-value=53 Score=28.72 Aligned_cols=135 Identities=14% Similarity=0.171 Sum_probs=81.6
Q ss_pred ccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCc
Q 044557 186 DAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGN 265 (362)
Q Consensus 186 ~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~ 265 (362)
+-+..+.++.+- .+.+..+.-++|.|+.+.... .++..+.. ..- .-.|.-.|++.+.+..|.-..+.|+.++..
T Consensus 87 ~l~~Dv~vse~y-vyvad~ssGL~IvDIS~P~sP-~~~~~lnt-~gy--aygv~vsGn~aYVadlddgfLivdvsdpss- 160 (370)
T COG5276 87 DLFADVRVSEEY-VYVADWSSGLRIVDISTPDSP-TLIGFLNT-DGY--AYGVYVSGNYAYVADLDDGFLIVDVSDPSS- 160 (370)
T ss_pred hhhheeEecccE-EEEEcCCCceEEEeccCCCCc-ceeccccC-Cce--EEEEEecCCEEEEeeccCcEEEEECCCCCC-
Confidence 345566666443 444556667999999876533 22222221 111 223344688999999777788999987554
Q ss_pred EEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCC---CCcEEEEEeeec
Q 044557 266 ILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGH---RGPVKCLAAAID 329 (362)
Q Consensus 266 ~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h---~~~v~~~~~~~~ 329 (362)
.++.+........-..++.++++...+-.|+.+.+-|...+... +|.+| ...+.++..+++
T Consensus 161 P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sP---vli~~~n~g~g~~sv~vsdn 224 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSP---VLIGSYNTGPGTYSVSVSDN 224 (370)
T ss_pred ceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCC---eEEEEEecCCceEEEEecCC
Confidence 34455554444444577788888888888999999997654322 23333 225666655544
No 434
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.09 E-value=12 Score=21.25 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=22.5
Q ss_pred cCCCEEEEEE-CCCcEEEEECCCceEEEeeec
Q 044557 152 KDETLLYSVS-WDRTIKIWRTSDFKCLESITN 182 (362)
Q Consensus 152 ~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~ 182 (362)
|+++.|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4666655544 578999999988887776653
No 435
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=76.05 E-value=50 Score=33.03 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=23.8
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
...|...+|+.|.+.++....+..|-+.+.
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 356778889999998888888888888764
No 436
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=75.93 E-value=56 Score=28.86 Aligned_cols=165 Identities=14% Similarity=0.136 Sum_probs=73.5
Q ss_pred ceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEE-EEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC
Q 044557 174 FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIK-VWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR 252 (362)
Q Consensus 174 ~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~-iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~ 252 (362)
++.-+.+...-...+..+..+++|++++.+..|.+. -|+. +... ...........|.++.|.|++...+.+ ..|
T Consensus 133 G~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~--G~~~--w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg 207 (302)
T PF14870_consen 133 GKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDP--GQTT--WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGG 207 (302)
T ss_dssp TSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-T--T-SS---EEEE--SSS-EEEEEE-TTS-EEEEE-TTT
T ss_pred CCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecC--CCcc--ceEEccCccceehhceecCCCCEEEEe-CCc
Confidence 333333333445678888889999987777777664 5653 2211 111112235679999999998776655 788
Q ss_pred cEEEEeccCCCCcEEEEEeec--CccceeEEEEEeC-CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 253 SIIVWEKEEDDGNILVVGALR--GHTKSILCMAVVS-DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 253 ~i~~wd~~~~~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
.|++=+... ..........+ .-.-.+..+++.+ +.+..++..|++..=.=..++.+.......-......+.|.+.
T Consensus 208 ~~~~s~~~~-~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 208 QIQFSDDPD-DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEEEE-TT-EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred EEEEccCCC-CccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 888776221 11111110011 1122368888864 3444445555543321012333333333344556788888654
Q ss_pred CCccCCCCCceEEEecCCCCcEEEE
Q 044557 330 NDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 330 ~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
.+ + ++- +.||.|--|
T Consensus 287 ~~-------g--f~l-G~~G~ll~~ 301 (302)
T PF14870_consen 287 DK-------G--FVL-GQDGVLLRY 301 (302)
T ss_dssp TE-------E--EEE--STTEEEEE
T ss_pred Cc-------e--EEE-CCCcEEEEe
Confidence 21 2 323 578887655
No 437
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=73.50 E-value=69 Score=28.75 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=8.9
Q ss_pred ecCCCEEEEEcCC
Q 044557 239 SCDGSVLYSGACD 251 (362)
Q Consensus 239 s~~~~~l~s~~~d 251 (362)
..+++.++.||.+
T Consensus 255 ~~~~~Iyv~GG~~ 267 (346)
T TIGR03547 255 ISNGVLLVAGGAN 267 (346)
T ss_pred EECCEEEEeecCC
Confidence 3477777888754
No 438
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=72.80 E-value=71 Score=28.63 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=49.0
Q ss_pred eeEEEEecCCCEEEEEE---CCC-------cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEE-eCCCeEEEE
Q 044557 145 VSALALTKDETLLYSVS---WDR-------TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTG-SADKKIKVW 211 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s---~d~-------~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~-~~dg~i~iw 211 (362)
-.-+++++..+.|+.-- .++ .|-++|+.+.+.+..+... .++.+|.++.+.+ |++. ..++.+.+|
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 34577777666555421 121 4677799999998887643 4678999998775 5454 468999999
Q ss_pred eCCCCCCcc
Q 044557 212 RRSPGNKKH 220 (362)
Q Consensus 212 ~~~~~~~~~ 220 (362)
|..+++...
T Consensus 318 D~~tGk~~~ 326 (342)
T PF06433_consen 318 DAATGKLVR 326 (342)
T ss_dssp ETTT--EEE
T ss_pred eCcCCcEEe
Confidence 999886443
No 439
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.04 E-value=69 Score=33.91 Aligned_cols=77 Identities=13% Similarity=0.279 Sum_probs=51.4
Q ss_pred cccEEEEEEcCCCcEEEEeCCCeEEE--EeCCCCC----C-------------cceeehhhhccccceeEEEEecCCCEE
Q 044557 185 DDAINAVALSDDGDVYTGSADKKIKV--WRRSPGN----K-------------KHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 185 ~~~v~~v~~~~~~~~~s~~~dg~i~i--w~~~~~~----~-------------~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
...|.++....+|+++-++.||.|.- |...++- + ..++......+..+|..+.+....+.+
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~Il 257 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNIL 257 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccccee
Confidence 34677888778888777777774432 2222110 0 001111112457799999999888999
Q ss_pred EEEcCCCcEEEEeccC
Q 044557 246 YSGACDRSIIVWEKEE 261 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~ 261 (362)
++=+..++|.+|++..
T Consensus 258 Y~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 258 YVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeccCceEEEEEccC
Confidence 9999999999999865
No 440
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=71.18 E-value=84 Score=28.76 Aligned_cols=198 Identities=19% Similarity=0.232 Sum_probs=105.4
Q ss_pred cCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc----CCCc---EEEEe-C-C--CeEEEEeCCCCCCcc
Q 044557 152 KDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS----DDGD---VYTGS-A-D--KKIKVWRRSPGNKKH 220 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~----~~~~---~~s~~-~-d--g~i~iw~~~~~~~~~ 220 (362)
|...+++....++-+.+||+... .++.+.. +.++.|.+- -+|+ ++.++ . + .+|++|.+.......
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~---Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLPV---GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S---S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeecC---CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 44567888888899999999754 4444432 233333221 1232 44443 2 2 479999776432211
Q ss_pred eeehh----hhccccceeEEEE--ec-CCC-EEEEEcCCCcEEEEeccCC-CCc--EEEEEeecCccceeEEEEEeCC--
Q 044557 221 SLVDV----LERHNSGINALAL--SC-DGS-VLYSGACDRSIIVWEKEED-DGN--ILVVGALRGHTKSILCMAVVSD-- 287 (362)
Q Consensus 221 ~~~~~----~~~h~~~v~~i~~--s~-~~~-~l~s~~~d~~i~~wd~~~~-~~~--~~~~~~~~~h~~~v~~~~~~~~-- 287 (362)
+.+.. +......+..+++ +| +|. +++..+.+|.+..|.+... .+. ...+..+.. ...+-.+..+..
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG 220 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC
Confidence 11110 0011123455554 34 454 6677888999988887532 222 233444443 224566666644
Q ss_pred eEEEeeCCCcEEEeeCCCC---ceeeeeEec--CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 288 LVCSGSADKTIRIWRGIDR---NYTCLAVLE--GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~---~~~~~~~l~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.|..+=+|..|.-|+.... ....+.... +...-|-.+++-... ...+++|+|.=.+++..||+...|
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~-----~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGS-----DGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-C-----CC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecC-----CCCeEEEEEcCCCCeEEEEecCCC
Confidence 7888999988766665321 223343333 245678888886542 245789999888889999998654
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.08 E-value=0.83 Score=42.02 Aligned_cols=139 Identities=16% Similarity=0.180 Sum_probs=88.3
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
..+-|.+.-++.++.+..+..||-......+ . ..+.....++|..++. ++.+-..+.+.+||+.+.. .+.+..
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le-~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~- 114 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILE-L--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLES- 114 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceecc-c--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHhc-
Confidence 3455666668888889999999865433322 2 2344455677776665 3456677899999986532 122211
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCC-eEEEeeCCCcE
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSD-LVCSGSADKTI 298 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~s~s~D~~i 298 (362)
-..|.... +.|++.+..++.+-..+.+++|.....+.. ...| |..++.++++..+ +.+.++.|..+
T Consensus 115 gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~i-----iv~Gkh~RRgtq~av~lEd~vil~dcd~~L 182 (615)
T KOG2247|consen 115 GGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRI-----IVMGKHQRRGTQIAVTLEDYVILCDCDNTL 182 (615)
T ss_pred cCcchHHH--HhhccCCccccccccccceEEEeccchhhh-----hhhcccccceeEEEecccceeeecCcHHHH
Confidence 11122222 678998999999999999999987654321 1234 8888999988653 66666655443
No 442
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=70.68 E-value=14 Score=20.81 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=13.1
Q ss_pred cceeEEEEecCCCEEEEEc
Q 044557 231 SGINALALSCDGSVLYSGA 249 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~ 249 (362)
..-....|||||+.|+-.+
T Consensus 9 ~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEE
T ss_pred ccccCEEEecCCCEEEEEe
Confidence 3456778999999877554
No 443
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=69.80 E-value=47 Score=25.26 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=62.1
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCce--------EEEeeeccCcccEEEEEE---cCC-C-cEEEEeCCCeEEEEeCCC
Q 044557 149 ALTKDETLLYSVSWDRTIKIWRTSDFK--------CLESITNAHDDAINAVAL---SDD-G-DVYTGSADKKIKVWRRSP 215 (362)
Q Consensus 149 ~~~~~~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~~~h~~~v~~v~~---~~~-~-~~~s~~~dg~i~iw~~~~ 215 (362)
.|......|++++.-++|.|++..... .+..+. -...|++++- .|+ + .++.-++...+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 455555678888888999999865332 233332 3456777754 332 2 355556666899999876
Q ss_pred CCCcceeehhhhccccceeEEEEec---CCCEEEEEcCCCcEEEEecc
Q 044557 216 GNKKHSLVDVLERHNSGINALALSC---DGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~---~~~~l~s~~~d~~i~~wd~~ 260 (362)
.... . .+.-...|+++.+-. ...-|+..|....|.-||.+
T Consensus 83 N~d~---F--yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 83 NSDL---F--YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred Cchh---h--hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 4321 1 123356788887743 12344444445667667654
No 444
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=67.73 E-value=1.6e+02 Score=30.50 Aligned_cols=109 Identities=18% Similarity=0.278 Sum_probs=60.2
Q ss_pred ceeEEEEecC-CCEEEEEc----------CCCcEEEEeccCCCCcEEEEEeecCccceeEEEE-EeCCeEEEeeCCCcEE
Q 044557 232 GINALALSCD-GSVLYSGA----------CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMA-VVSDLVCSGSADKTIR 299 (362)
Q Consensus 232 ~v~~i~~s~~-~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~s~s~D~~i~ 299 (362)
.+.+..|..| +.+++.|. ..|.|.+|...+ .+++..+.... -.+.+.++. |.+.++| +-...|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~-v~Gav~aL~~fngkllA--~In~~vr 851 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETV-VKGAVYALVEFNGKLLA--GINQSVR 851 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeee-eccceeehhhhCCeEEE--ecCcEEE
Confidence 3444557766 66777663 235666666654 23333332221 123444443 3444444 4456799
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+|+...+ +.+..-..|..++..+...-.++ .|+.|..-+.|.+-.
T Consensus 852 Lye~t~~--~eLr~e~~~~~~~~aL~l~v~gd---------eI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 852 LYEWTTE--RELRIECNISNPIIALDLQVKGD---------EIAVGDLMRSITLLQ 896 (1096)
T ss_pred EEEcccc--ceehhhhcccCCeEEEEEEecCc---------EEEEeeccceEEEEE
Confidence 9986432 33555567888888887765543 366776666655543
No 445
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=67.72 E-value=16 Score=19.02 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=18.0
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEE
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIW 169 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iw 169 (362)
...++++++|+++++=+..+.|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3567778888887777777777654
No 446
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=67.49 E-value=38 Score=31.41 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=41.0
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCC
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~ 218 (362)
+.+.+++-+.+|++.++.....+.+-. ..-.+.+.-+++||.+..+..-..|+|+++.+++..+
T Consensus 327 ~rkgF~~l~~~G~L~~f~st~~~~lL~--~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 327 NRKGFYSLYRNGTLQSFYSTSEKLLLF--ERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred ccceEEEEcCCCceeeeecccCcceeh--hhhhcCcceeeeCcccchheeecCCceEEEEecCCCC
Confidence 345677777888888776544433211 1122355668899988755555667899998877654
No 447
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=66.40 E-value=1.1e+02 Score=28.29 Aligned_cols=152 Identities=9% Similarity=0.091 Sum_probs=77.7
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcc--ee
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKH--SL 222 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~--~~ 222 (362)
...+...+++.+++.+..-..++-||-... ............+..+.+.+++.++.++.+|.+.. ....+..-. .+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~-~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP-YWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc-ceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccce
Confidence 334556778777766554333444543221 11222223345678899999999887778887644 333332100 11
Q ss_pred ehhh-hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-CeEEEeeCCCcEEE
Q 044557 223 VDVL-ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-DLVCSGSADKTIRI 300 (362)
Q Consensus 223 ~~~~-~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~s~s~D~~i~~ 300 (362)
.... ......+..+.+.+++.. +.++..|.+.... .. .........-..-....+.+.|.+ +.....+.+|.|.-
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~-D~-G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRST-DG-GKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeC-CC-CcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEE
Confidence 1110 111235788888877665 4555677765553 21 222222111111223456777643 45666667777655
Q ss_pred e
Q 044557 301 W 301 (362)
Q Consensus 301 W 301 (362)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=65.57 E-value=33 Score=28.36 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=33.7
Q ss_pred CcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 197 GDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 197 ~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
+.++.+...++|.+|++..... .+...+. .-+.|..+.++..|.+|++-=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~--~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC--PLLCTFS-TVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC--ceeEEEc-chhheeEEEeccccceEEEEE
Confidence 3465557778999999983322 2222222 236789999999999999863
No 449
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=65.37 E-value=1e+02 Score=27.60 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=7.8
Q ss_pred CeEEEEeCCCC
Q 044557 206 KKIKVWRRSPG 216 (362)
Q Consensus 206 g~i~iw~~~~~ 216 (362)
..|.+||..+.
T Consensus 168 ~~v~~YDp~t~ 178 (346)
T TIGR03547 168 KNVLSYDPSTN 178 (346)
T ss_pred ceEEEEECCCC
Confidence 46888887654
No 450
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=65.21 E-value=1.2e+02 Score=28.22 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=20.7
Q ss_pred eEEEEEeC--CeEEEeeCCCcEEEeeCCC
Q 044557 279 ILCMAVVS--DLVCSGSADKTIRIWRGID 305 (362)
Q Consensus 279 v~~~~~~~--~~~~s~s~D~~i~~W~~~~ 305 (362)
|.++...+ ..+.+.+.++.|.+|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 77777764 4899999999999999754
No 451
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=64.97 E-value=54 Score=31.74 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=24.2
Q ss_pred ceeEEEEec----CCCEEEEEcCCCcEEEEeccCCC
Q 044557 232 GINALALSC----DGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 232 ~v~~i~~s~----~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
.+.++++++ +..+|++-+.|+++|+||+.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQ 251 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTC
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCe
Confidence 345566666 77899999999999999998754
No 452
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=64.45 E-value=1.2e+02 Score=28.20 Aligned_cols=197 Identities=16% Similarity=0.171 Sum_probs=79.1
Q ss_pred CCCEEEEEE-CCCcEEEEECCC----ceEEEeeec--cCc----ccEEEEEEcCCCc-EEE--EeCC----CeEEEEeCC
Q 044557 153 DETLLYSVS-WDRTIKIWRTSD----FKCLESITN--AHD----DAINAVALSDDGD-VYT--GSAD----KKIKVWRRS 214 (362)
Q Consensus 153 ~~~~l~s~s-~d~~i~iwd~~~----~~~~~~~~~--~h~----~~v~~v~~~~~~~-~~s--~~~d----g~i~iw~~~ 214 (362)
+-++|+..+ ..++|.|.|+.+ .+..+.+.. .+. .....+.--|+|. ++| |..+ |-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777777 667999999873 333333321 011 1111222236775 444 2333 356677665
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEc--------------------CCCcEEEEeccCCCCcEEEEEeecC
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA--------------------CDRSIIVWEKEEDDGNILVVGALRG 274 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--------------------~d~~i~~wd~~~~~~~~~~~~~~~~ 274 (362)
+.+........ .....--..+.|.|.-+.++|.. .-.++.+||+...+ ....-.+..
T Consensus 166 tf~v~g~We~~-~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~--~~Q~idLg~ 242 (461)
T PF05694_consen 166 TFEVKGRWEKD-RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK--LLQTIDLGE 242 (461)
T ss_dssp T--EEEE--SB--TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE--EEEEEES-T
T ss_pred cccccceeccC-CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc--EeeEEecCC
Confidence 43322111110 01112234556667666666652 23579999998632 222223333
Q ss_pred ccceeEEEEEe--CC---eEEEeeCCCcEEEe-eCCCCceeeeeEec-------CC------------CCcEEEEEeeec
Q 044557 275 HTKSILCMAVV--SD---LVCSGSADKTIRIW-RGIDRNYTCLAVLE-------GH------------RGPVKCLAAAID 329 (362)
Q Consensus 275 h~~~v~~~~~~--~~---~~~s~s~D~~i~~W-~~~~~~~~~~~~l~-------~h------------~~~v~~~~~~~~ 329 (362)
...-.+.+.|. ++ -++.+....+|-.| +-....+..-+.+. +- ..-|+++.+|.
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl- 321 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL- 321 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T-
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc-
Confidence 23345677763 32 23333344444333 31222332222211 11 13356666654
Q ss_pred CCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 330 NDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 330 ~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
++.++-+|.=.+|.||.||+.-|-
T Consensus 322 -------DDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 322 -------DDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -------TS-EEEEEETTTTEEEEEE-SSTT
T ss_pred -------CCCEEEEEcccCCcEEEEecCCCC
Confidence 445677788889999999997653
No 453
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=63.42 E-value=55 Score=27.59 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=40.5
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC
Q 044557 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG 197 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~ 197 (362)
.+++.-+|++.+++-.-++|...|..+++.+.++..+ +..|+++||-..+
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgGkn 265 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGGKN 265 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecCCC
Confidence 4555667888888888889999999999999888754 7789999997543
No 454
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=63.42 E-value=1.3e+02 Score=30.64 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=41.6
Q ss_pred CCEEEEEECCCcEEEEECCCceEEEeeeccCcc-------cEEEEEEcC-----------------CCcEEEEeCCCeEE
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD-------AINAVALSD-----------------DGDVYTGSADKKIK 209 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~-------~v~~v~~~~-----------------~~~~~s~~~dg~i~ 209 (362)
+..++.++.++.|.-.|..+++.+-.+...... ..+.+++-. +++++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777888888988898888866544321100 012233311 23577888899888
Q ss_pred EEeCCCCCCc
Q 044557 210 VWRRSPGNKK 219 (362)
Q Consensus 210 iw~~~~~~~~ 219 (362)
-.|.++++..
T Consensus 274 ALDA~TGk~~ 283 (764)
T TIGR03074 274 ALDADTGKLC 283 (764)
T ss_pred EEECCCCCEE
Confidence 8888887643
No 455
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.72 E-value=29 Score=30.11 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=40.1
Q ss_pred EEcCCCcEEEEe------CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC
Q 044557 192 ALSDDGDVYTGS------ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 192 ~~~~~~~~~s~~------~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~ 250 (362)
.|+|+|.++-++ .-|.|=|||...+ ...+..+..|.-.-..+.+.+||+.|+.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~---fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG---FQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc---cceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 589999854333 2368999998743 2334556667777788999999999988753
No 456
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=59.08 E-value=23 Score=34.96 Aligned_cols=68 Identities=10% Similarity=0.219 Sum_probs=42.9
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRR 213 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~ 213 (362)
..++++.-+|.++-++.+..||.|++|+....+...... ...+-..+.|...| +++..+|..+.-|.-
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~--~~~p~~nlv~tnhg-l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE--EAKPKENLVFTNHG-LVTATSDRRALAWKE 82 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh--hcCCccceeeeccc-eEEEeccchhheeec
Confidence 346778888999999999999999999976543311111 01122233444333 666777777777753
No 457
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=58.37 E-value=1.8e+02 Score=28.19 Aligned_cols=68 Identities=7% Similarity=0.064 Sum_probs=38.6
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCCeEEEEeCC
Q 044557 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADKKIKVWRRS 214 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg~i~iw~~~ 214 (362)
.+.|+|....|+.=.....=.++++......-+....-.+-|.|.+|.+||. ++ +.+..=.-.+||-.
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 3457777776665443333334555433222222224567899999999996 43 44444456778743
No 458
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=56.01 E-value=30 Score=18.32 Aligned_cols=23 Identities=22% Similarity=0.048 Sum_probs=18.3
Q ss_pred EEEEEECCCcEEEEECCCceEEE
Q 044557 156 LLYSVSWDRTIKIWRTSDFKCLE 178 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~~~~~~ 178 (362)
.++.++.++.+...|.++++.+-
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEE
Confidence 57778889999999998877543
No 459
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.17 E-value=1.7e+02 Score=27.92 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=47.5
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEE---------CCCceEE---Ee-------eeccCcccEEEEEEcCCC----cEEE
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWR---------TSDFKCL---ES-------ITNAHDDAINAVALSDDG----DVYT 201 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd---------~~~~~~~---~~-------~~~~h~~~v~~v~~~~~~----~~~s 201 (362)
|.-+..++.|..++-.|.+|.+.++= +++++.. ++ +.....-.+..++|+|+. .+..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 55667789999988888888776653 1233211 11 111112246778899876 4778
Q ss_pred EeCCCeEEEEeCCCC
Q 044557 202 GSADKKIKVWRRSPG 216 (362)
Q Consensus 202 ~~~dg~i~iw~~~~~ 216 (362)
-..|+.||+|+....
T Consensus 186 L~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEP 200 (741)
T ss_pred EecCcEEEEEecCCc
Confidence 889999999998654
No 460
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.63 E-value=3.2e+02 Score=28.91 Aligned_cols=69 Identities=17% Similarity=0.087 Sum_probs=42.1
Q ss_pred CcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 184 HDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 184 h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
+..++.+..+.....++.+..-+.+-+|+....... +...+.....++++..++++-.||.+.+||...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQ---------SAYLPNGQLESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccceeeeecCCCcceeeeeeeeeehhcccccch---------hhcccccccCccCCceEEEEEecCCEEeeecCC
Confidence 344555555554455555666667777765443211 111111122278899999999999999999865
No 461
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=51.26 E-value=94 Score=26.67 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=46.3
Q ss_pred ecCceeEEEEec----C---CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEE----Ec-CCCcEEEEeCCCeE
Q 044557 141 HVDAVSALALTK----D---ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVA----LS-DDGDVYTGSADKKI 208 (362)
Q Consensus 141 h~~~v~~~~~~~----~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~----~~-~~~~~~s~~~dg~i 208 (362)
+...|+||+--+ + -..|+.|.+++.|.|.|.+....+.++... .-++ .+. |. -+.+++.++.||.|
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lp-svPv-~i~~~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLP-SVPV-FISVSGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecC-CCce-EEEEEeeeeccceEEEEEeCCCEE
Confidence 456788886521 1 258999999999999999988877766532 2222 222 22 34468888889887
Q ss_pred EEE
Q 044557 209 KVW 211 (362)
Q Consensus 209 ~iw 211 (362)
.+.
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 654
No 462
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=50.94 E-value=1.2e+02 Score=28.38 Aligned_cols=162 Identities=12% Similarity=0.082 Sum_probs=81.7
Q ss_pred cccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcc-eeehhhhc-ccccee-EEEEecCCCEEEEEcCCCcEEEE-ecc
Q 044557 185 DDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKH-SLVDVLER-HNSGIN-ALALSCDGSVLYSGACDRSIIVW-EKE 260 (362)
Q Consensus 185 ~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~-h~~~v~-~i~~s~~~~~l~s~~~d~~i~~w-d~~ 260 (362)
-..+..+-..|+|+.+-.-...++.++++.+..... ++...-.+ ....|+ ++..-..|.-|+.+..||-|.-| |.+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 345666778899983322223688888876543211 11111011 011222 12222356778899999999877 443
Q ss_pred CCC-CcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCC
Q 044557 261 EDD-GNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337 (362)
Q Consensus 261 ~~~-~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~ 337 (362)
... .....+..++-....+..+.... .-+++-+..|++.++.......-..... -+.+.-++++|..+
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~~~~Sp~~~------ 370 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQLVAMSPNQA------ 370 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---hcCcceeeeCcccc------
Confidence 322 22222222222223333333332 2577888888888876322222212222 22445566776543
Q ss_pred CceEEEecCCCCcEEEEecccC
Q 044557 338 TSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 338 ~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+|++- +.|.|+++.++++
T Consensus 371 ---~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 371 ---YLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred ---hheee-cCCceEEEEecCC
Confidence 34433 4577999888654
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=50.35 E-value=1e+02 Score=29.27 Aligned_cols=65 Identities=11% Similarity=0.215 Sum_probs=45.4
Q ss_pred EEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 190 AVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 190 ~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
+..-..+|.+++++.-|.||+||.-.-. . ...+++-...|..|..+.+|+++++.+. ..+.+-|+
T Consensus 567 s~~tTesGyIa~as~kGDirLyDRig~r-A---KtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 567 SGMTTESGYIAAASRKGDIRLYDRIGKR-A---KTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred ccccccCceEEEecCCCceeeehhhcch-h---hhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 3334456789999999999999965322 1 2233455677888999999998886664 45666664
No 464
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=49.83 E-value=1.8e+02 Score=25.46 Aligned_cols=92 Identities=11% Similarity=0.220 Sum_probs=52.1
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-------CCCeEEEEeCCCCCCcceeehh-h-hcccccee
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-------ADKKIKVWRRSPGNKKHSLVDV-L-ERHNSGIN 234 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-------~dg~i~iw~~~~~~~~~~~~~~-~-~~h~~~v~ 234 (362)
..|++||..+.+... +-..-.+.|.++.|..+.+++.++ ....+..||..+..- ..... . ..-+.+|+
T Consensus 16 ~~lC~yd~~~~qW~~-~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeec-CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccccCCCcEE
Confidence 468899987765433 223456789999998666644332 355788898876431 11111 1 12346788
Q ss_pred EEEEec-CCCEEE-EEc-CCC--cEEEEe
Q 044557 235 ALALSC-DGSVLY-SGA-CDR--SIIVWE 258 (362)
Q Consensus 235 ~i~~s~-~~~~l~-s~~-~d~--~i~~wd 258 (362)
.+.+.. |+..+. .|. .++ .|..||
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEc
Confidence 887643 444444 332 233 456665
No 465
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=48.61 E-value=37 Score=19.17 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=17.4
Q ss_pred EEEcCceeEEEecCCcEEEEecC
Q 044557 74 LVVLADKLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 74 i~~~~~~l~s~~~dg~i~~w~~~ 96 (362)
+.+.++.++.++.||.+..+|.+
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT
T ss_pred CEEECCEEEEEcCCCEEEEEeCC
Confidence 35567789999999999998864
No 466
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=48.44 E-value=1.1e+02 Score=30.82 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=44.1
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeee--ccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT--NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSP 215 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~ 215 (362)
++.+.++..| ++-++++|.|.++...+........ ..|...|+++.+...+-+++-...-+++.++.++
T Consensus 628 Pvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 628 PVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred cccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence 5566666544 4557789999999987754333221 2355579999998887655444444666665544
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=46.82 E-value=1.5e+02 Score=23.61 Aligned_cols=26 Identities=8% Similarity=0.201 Sum_probs=21.1
Q ss_pred eeEEEEEeCC--------eEEEeeCCCcEEEeeC
Q 044557 278 SILCMAVVSD--------LVCSGSADKTIRIWRG 303 (362)
Q Consensus 278 ~v~~~~~~~~--------~~~s~s~D~~i~~W~~ 303 (362)
.+..++|++. +|+..+.++.+.||..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 5778888752 6899999999999974
No 468
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=46.72 E-value=2.1e+02 Score=25.37 Aligned_cols=204 Identities=14% Similarity=0.119 Sum_probs=111.3
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECC------CceEEE-eeec----cCcccEEEEEEcCCC-------------cEEE
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTS------DFKCLE-SITN----AHDDAINAVALSDDG-------------DVYT 201 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~------~~~~~~-~~~~----~h~~~v~~v~~~~~~-------------~~~s 201 (362)
..++++|.+.+.++...-+...+||.. ..+.+. ++-. ......+.+.|+... .++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 568899999888888888999999986 122221 2110 012356667776321 2567
Q ss_pred EeCCCeEEEEeCCCCCC--cceeehhhhccccce-eEEEEec--CCCEEEEEc-CCCcEEEEeccCCCCcEEEEEeecCc
Q 044557 202 GSADKKIKVWRRSPGNK--KHSLVDVLERHNSGI-NALALSC--DGSVLYSGA-CDRSIIVWEKEEDDGNILVVGALRGH 275 (362)
Q Consensus 202 ~~~dg~i~iw~~~~~~~--~~~~~~~~~~h~~~v-~~i~~s~--~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~h 275 (362)
+++||+|.=|...-... ....+..-......| .-+++.. .+.+|+.+. ..++|.+||-.-... .+-+.+..-
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~--~~~g~F~DP 183 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP--PLPGSFIDP 183 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc--cCCCCccCC
Confidence 89999999997532221 011111111112333 3355553 356666554 578899998542110 000000000
Q ss_pred -----cce--e------EEEEEe---C--CeEEEeeCCCcEEEeeCCCCceeeeeEe--cCCCCcEEEEEeeecCCccCC
Q 044557 276 -----TKS--I------LCMAVV---S--DLVCSGSADKTIRIWRGIDRNYTCLAVL--EGHRGPVKCLAAAIDNDRCDS 335 (362)
Q Consensus 276 -----~~~--v------~~~~~~---~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~~~~ 335 (362)
-.+ | .-+.|. + ..=+.|..-|.|-+++.. +.+++.+ .+.-+.-|.++..|....
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~---G~l~~r~as~g~LNaPWG~a~APa~FG--- 257 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN---GQLLRRVASSGRLNAPWGLAIAPESFG--- 257 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC---CcEEEEeccCCcccCCceeeeChhhhC---
Confidence 000 0 111111 1 112344555788888853 3445544 355667899998886433
Q ss_pred CCCceEEEecCCCCcEEEEecc
Q 044557 336 SDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 336 ~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
...+.+|+---.||+|..+|..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred CCCCCeEEeecCCceeEEecCC
Confidence 2344678777779999999964
No 469
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=45.75 E-value=73 Score=32.02 Aligned_cols=142 Identities=14% Similarity=0.118 Sum_probs=74.0
Q ss_pred CEEEEEECCCcEEEEECCCce---EEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcc-eeehhhhccc
Q 044557 155 TLLYSVSWDRTIKIWRTSDFK---CLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKH-SLVDVLERHN 230 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~h~ 230 (362)
..+..|++++.+.|+...... +...........+.++.+++. .+..|.-||++-.|-......-. .....+....
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~-Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~ 626 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG-SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGS 626 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc-ccccCccCCccccccCCCCCCCCCCCccccccCC
Confidence 346778899999999765221 111111122334555555542 24555556666555332211000 0001112235
Q ss_pred cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 231 SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
.+|...++..| .+-|+.+|.|.++...+...... ......|...|+++.+.+. .++-++.| .++++.
T Consensus 627 lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~-leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfh 695 (925)
T KOG3522|consen 627 LPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWD-LEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFH 695 (925)
T ss_pred ccccchhhhhc---eeeeecCCceEEEechhccccch-hHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEec
Confidence 67777777654 55677899999998765332221 1223346677899988765 33333333 345444
No 470
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=45.27 E-value=1.1e+02 Score=23.42 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=32.3
Q ss_pred ceeEEEEecCCCEEEEEc-CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEee
Q 044557 232 GINALALSCDGSVLYSGA-CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~ 302 (362)
++----|.+|.+.|+.+| .|++|++|.+.........+..+. .......+++-+...+-...-...|+++
T Consensus 12 g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~-s~~~~~G~~~lPK~~~dv~~~Ei~R~lk 82 (136)
T PF08954_consen 12 GVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYR-SPEPQKGFAFLPKRACDVMKCEIARFLK 82 (136)
T ss_dssp S-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE---SS--SEEEE--GGGS-GGGTEEEEEEE
T ss_pred ceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccc-cCCCeEeeEecCcccCCchheeeeeeee
Confidence 344445677777776555 689999999987655555554443 2344455666554322222223344444
No 471
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=45.12 E-value=3e+02 Score=26.66 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=37.2
Q ss_pred EecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEec------CCcEEEEecCCCC
Q 044557 26 ALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQ------DHKIRVWKINNQE 99 (362)
Q Consensus 26 ~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~------dg~i~~w~~~~~~ 99 (362)
.+.+..++.++.|+.+.-.|..+.+........... ..........+..+.++.+.. +|.|..+|.++++
T Consensus 117 av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~----~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 117 ALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYK----AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeeccccccc----ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc
Confidence 344456677778888888887665432211110000 000111122334556666543 6889998888776
Q ss_pred C
Q 044557 100 P 100 (362)
Q Consensus 100 ~ 100 (362)
.
T Consensus 193 ~ 193 (527)
T TIGR03075 193 L 193 (527)
T ss_pred e
Confidence 3
No 472
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=44.53 E-value=2.1e+02 Score=26.30 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=32.5
Q ss_pred EEecCCCE-EEEEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 149 ALTKDETL-LYSVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 149 ~~~~~~~~-l~s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
+|.+||+. |+++..|+ .+.+-|+.+++..+ +..+.........++|+.+ ++-...+..++-.|+++.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 35778854 55555565 45566888887654 3322212222345566665 4444455678888887764
No 473
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=44.48 E-value=2.7e+02 Score=26.00 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=36.2
Q ss_pred CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeC
Q 044557 155 TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRR 213 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~ 213 (362)
.++..=+.||.+.+++-+.......+. ..--.-.+++.+.-. +++++.+..+.-|..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 467778999999999977544222221 111122356665544 888888888888854
No 474
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=43.55 E-value=53 Score=22.77 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=21.9
Q ss_pred eeEEEEecCCCEEEEEc-CCCcEEEEecc
Q 044557 233 INALALSCDGSVLYSGA-CDRSIIVWEKE 260 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~-~d~~i~~wd~~ 260 (362)
.+.|.++|++++|+.++ ..+.|++|...
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 45688999999988776 46789888764
No 475
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=43.40 E-value=2.6e+02 Score=25.50 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=8.8
Q ss_pred CcEEEEECCCceE
Q 044557 164 RTIKIWRTSDFKC 176 (362)
Q Consensus 164 ~~i~iwd~~~~~~ 176 (362)
..+.+||..+.+-
T Consensus 189 ~~v~~YD~~t~~W 201 (376)
T PRK14131 189 KEVLSYDPSTNQW 201 (376)
T ss_pred ceEEEEECCCCee
Confidence 3588889876543
No 476
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.99 E-value=2e+02 Score=23.92 Aligned_cols=100 Identities=13% Similarity=0.026 Sum_probs=48.6
Q ss_pred CCCEEEEEECC--CcEEEEECCCceEEEeeeccCcccEE--EEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhc
Q 044557 153 DETLLYSVSWD--RTIKIWRTSDFKCLESITNAHDDAIN--AVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLER 228 (362)
Q Consensus 153 ~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~~h~~~v~--~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 228 (362)
++.++.+.+.- ..|++||+.+++.+...... ...+. .+.-..+.-..-.-.+|.-.++|.++-+. +..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~-------lg~ 126 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE-------LGR 126 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhh-------hcc
Confidence 34566666543 47999999988876544322 11111 11111111122334566666777655332 222
Q ss_pred cccceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
++.+--.=....|+..|+.+....+++.-|-+
T Consensus 127 ~~y~GeGWgLt~d~~~LimsdGsatL~frdP~ 158 (262)
T COG3823 127 FSYEGEGWGLTSDDKNLIMSDGSATLQFRDPK 158 (262)
T ss_pred cccCCcceeeecCCcceEeeCCceEEEecCHH
Confidence 22111111223466667777666666665543
No 477
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=41.24 E-value=82 Score=19.71 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.1
Q ss_pred ceeEEEEecCCCEEEEEEC
Q 044557 144 AVSALALTKDETLLYSVSW 162 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~ 162 (362)
.+.++++-|||++|++|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 3567888899999998864
No 478
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.21 E-value=2.2e+02 Score=28.54 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=37.4
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSP 215 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~ 215 (362)
-.|+|++.. |+.+..+.-.|. .+-.+.|+.+..++....||++.+|++-.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecch
Confidence 458888865 444544443454 66788999999999999999999998753
No 479
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=39.30 E-value=82 Score=24.07 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=23.4
Q ss_pred eeEEEEecCCCEEEEEE-CCCcEEEEECCCce-EEEeee-ccCcccEEEEEEcCC
Q 044557 145 VSALALTKDETLLYSVS-WDRTIKIWRTSDFK-CLESIT-NAHDDAINAVALSDD 196 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~-~~~~~~-~~h~~~v~~v~~~~~ 196 (362)
+.---+.+|.++|+.++ .|++|+.|.+...+ .+..+. .....+...+++-|.
T Consensus 13 ~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 13 VLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPK 67 (136)
T ss_dssp -EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--G
T ss_pred eeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCc
Confidence 33444678887766655 78899999987652 111111 123445566777664
No 480
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=38.75 E-value=4.8e+02 Score=27.26 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=64.1
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-------cEEEEeCCCeEEEEeCCCCC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-------DVYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-------~~~s~~~dg~i~iw~~~~~~ 217 (362)
++....+.+...++.++.++.+..-++.............+..|.|+.++|-| .++.|.++..+.+--..+..
T Consensus 490 ~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~ 569 (1096)
T KOG1897|consen 490 ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL 569 (1096)
T ss_pred eEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc
Confidence 34444444555566666666666666655442222222345678888888642 25667777766655433322
Q ss_pred Ccceeehhhhc--cccceeEEEEecCCCEEEEEcCCCcEEEEeccCC
Q 044557 218 KKHSLVDVLER--HNSGINALALSCDGSVLYSGACDRSIIVWEKEED 262 (362)
Q Consensus 218 ~~~~~~~~~~~--h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~ 262 (362)
... ....+.. -+..|--..+-.|+.+|.++..||.+..|-+...
T Consensus 570 ~~~-~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 570 ILI-THEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred cee-eeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 111 1111111 1122333445557899999999999988876543
No 481
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=37.29 E-value=2.9e+02 Score=24.38 Aligned_cols=183 Identities=7% Similarity=-0.009 Sum_probs=0.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCceE----EEeeeccCcccEEEEEEcCCCcEEEEeC-----CCeEEEEeCCCCCC
Q 044557 153 DETLLYSVSWD-----RTIKIWRTSDFKC----LESITNAHDDAINAVALSDDGDVYTGSA-----DKKIKVWRRSPGNK 218 (362)
Q Consensus 153 ~~~~l~s~s~d-----~~i~iwd~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~s~~~-----dg~i~iw~~~~~~~ 218 (362)
++.+++.|+.+ ..+..+|+.+.+. ...-.......-.+++...+.-++.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~-- 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ-- 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC--
Q ss_pred cceeehhhhcc-ccceeEEEEecCCCEEEEEcCC----CcEEEEeccCCCCcEEEE----EeecCccceeEEEEEeCCeE
Q 044557 219 KHSLVDVLERH-NSGINALALSCDGSVLYSGACD----RSIIVWEKEEDDGNILVV----GALRGHTKSILCMAVVSDLV 289 (362)
Q Consensus 219 ~~~~~~~~~~h-~~~v~~i~~s~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~ 289 (362)
+........ .......+...+++..+.||.+ ..+..||..+..-..... ..-.............+.++
T Consensus 150 --~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 150 --EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred --CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEE
Q ss_pred EEeeCC-------------------------------------CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCc
Q 044557 290 CSGSAD-------------------------------------KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 290 ~s~s~D-------------------------------------~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
+.|+.+ ..+.+||....++..+..+......-.+++...+
T Consensus 228 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~--- 304 (323)
T TIGR03548 228 CIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGN--- 304 (323)
T ss_pred EECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECC---
Q ss_pred cCCCCCceEEEecCCCC
Q 044557 333 CDSSDTSYLVCSGSLDC 349 (362)
Q Consensus 333 ~~~~~~~~~l~s~s~D~ 349 (362)
.+.+.|+...
T Consensus 305 -------~iyv~GG~~~ 314 (323)
T TIGR03548 305 -------NIFSINGELK 314 (323)
T ss_pred -------EEEEEecccc
No 482
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=36.87 E-value=78 Score=17.64 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=19.6
Q ss_pred EEEEECCCcEEEEECCCceEEEeee
Q 044557 157 LYSVSWDRTIKIWRTSDFKCLESIT 181 (362)
Q Consensus 157 l~s~s~d~~i~iwd~~~~~~~~~~~ 181 (362)
++.++.||.|.-.|.++++.+-.+.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 4556889999999999998766554
No 483
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.16 E-value=5.2e+02 Score=27.44 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=26.1
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCc
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDF 174 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 174 (362)
....++|+|.-.++|.+...|.|++|-...-
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccce
Confidence 4567889999999999999999999976543
No 484
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=35.04 E-value=80 Score=31.46 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=44.7
Q ss_pred cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEee
Q 044557 231 SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~ 302 (362)
.-++++.-+|.|+-++.+..||.|++|+......... -....+-.-+-|.+.-+++...|+.+.-|+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski-----~~~~~p~~nlv~tnhgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKI-----CEEAKPKENLVFTNHGLVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhh-----hhhcCCccceeeeccceEEEeccchhheee
Confidence 3466777789999999999999999999765332111 011222233445555677888888888886
No 485
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=31.72 E-value=2.1e+02 Score=25.20 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=41.9
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee-----EEEEE--eCCeEEEeeCCCcEEEeeC
Q 044557 233 INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI-----LCMAV--VSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v-----~~~~~--~~~~~~s~s~D~~i~~W~~ 303 (362)
+++|...++|.+|+|+-.-.+|.+.|..+++ ++..+.|....= ..+++ ...++-.+..+++|.++|-
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~----I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGK----IIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCc----EEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 6777888899999999888888888866543 223333321100 01222 2334555677888999984
No 486
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=31.28 E-value=2.8e+02 Score=29.98 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=36.9
Q ss_pred EEEEEcCCCcEEE-------------EeCCCeEEEEeCCCCCCcceee-----------hhhhccccceeEEEEecCCCE
Q 044557 189 NAVALSDDGDVYT-------------GSADKKIKVWRRSPGNKKHSLV-----------DVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 189 ~~v~~~~~~~~~s-------------~~~dg~i~iw~~~~~~~~~~~~-----------~~~~~h~~~v~~i~~s~~~~~ 244 (362)
.++++.++|.++. .+.||+|.+.--....+..... ..-..|-+.+.+++++|||..
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v 675 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDV 675 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcE
Confidence 6788888887543 3456767666321111111000 011234566788999999987
Q ss_pred EEEEcCCCcE
Q 044557 245 LYSGACDRSI 254 (362)
Q Consensus 245 l~s~~~d~~i 254 (362)
+++-+..-.|
T Consensus 676 ~IAD~gN~rI 685 (1899)
T KOG4659|consen 676 IIADSGNSRI 685 (1899)
T ss_pred EEecCCchhh
Confidence 7765544444
No 487
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.19 E-value=5.7e+02 Score=25.85 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=37.5
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG 197 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~ 197 (362)
..+.-+.++|+.++|+--...|.|.+-+....+++-.+......+...++|+.+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 4566788899999999989999999888776665544442233333466666443
No 488
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=30.33 E-value=1.2e+02 Score=17.71 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=24.7
Q ss_pred cceeeeEecCcEEEEecCCCeEEEeecCCCC
Q 044557 20 SYVSSLALAGKFLYTGSSDNEVRSWDCNTFS 50 (362)
Q Consensus 20 ~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~ 50 (362)
+....|.+.|+++..+..++-+.|.|+....
T Consensus 2 G~a~~v~v~g~yaYva~~~~Gl~IvDISnPs 32 (42)
T PF08309_consen 2 GDARDVAVSGNYAYVADGNNGLVIVDISNPS 32 (42)
T ss_pred ceEEEEEEECCEEEEEeCCCCEEEEECCCCC
Confidence 4567788889998888888889999987643
No 489
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=30.03 E-value=7.3e+02 Score=26.75 Aligned_cols=140 Identities=21% Similarity=0.309 Sum_probs=73.3
Q ss_pred CCeEEEEeCCC-----CCC--cceeehh-hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc
Q 044557 205 DKKIKVWRRSP-----GNK--KHSLVDV-LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT 276 (362)
Q Consensus 205 dg~i~iw~~~~-----~~~--~~~~~~~-~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~ 276 (362)
-|.+.|||+-. +++ ..++... .+.-+++|..++ .-+|..+.+-| -.|.+|+++... ...-+. +..-.
T Consensus 1064 RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavc-eV~G~l~~~~G--qKI~v~~l~r~~-~ligVa-FiD~~ 1138 (1366)
T KOG1896|consen 1064 RGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVC-EVRGHLLSSQG--QKIIVRKLDRDS-ELIGVA-FIDLP 1138 (1366)
T ss_pred cccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEE-EeccEEEEccC--cEEEEEEeccCC-cceeeE-Eeccc
Confidence 37899998632 221 1111111 123355666554 23555444333 358899885432 222222 22223
Q ss_pred ceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecC--CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 277 KSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEG--HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 277 ~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
-.+.++....++++.|..=+.|.+....+... .+.-+.. -.-.+.++.|.-++.. -.++.+..|++|+++
T Consensus 1139 ~yv~s~~~vknlIl~gDV~ksisfl~fqeep~-rlsL~srd~~~l~v~s~EFLVdg~~-------L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1139 LYVHSMKVVKNLILAGDVMKSISFLGFQEEPY-RLSLLSRDFEPLNVYSTEFLVDGSN-------LSFLVSDADRNIHVY 1210 (1366)
T ss_pred eeEEehhhhhhheehhhhhhceEEEEEccCce-EEEEeecCCchhhceeeeeEEcCCe-------eEEEEEcCCCcEEEE
Confidence 33455555567777777777776655322222 2222221 2235777777765432 356778899999999
Q ss_pred ecc
Q 044557 355 QIS 357 (362)
Q Consensus 355 ~~~ 357 (362)
-.+
T Consensus 1211 ~Y~ 1213 (1366)
T KOG1896|consen 1211 MYA 1213 (1366)
T ss_pred EeC
Confidence 876
No 490
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=29.75 E-value=4.9e+02 Score=24.65 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=35.9
Q ss_pred ccEEEEEEcCCCcEEEEeC-CCeEEEEeCCCCCCcc--eeehhhh-ccccceeEEEEecCC
Q 044557 186 DAINAVALSDDGDVYTGSA-DKKIKVWRRSPGNKKH--SLVDVLE-RHNSGINALALSCDG 242 (362)
Q Consensus 186 ~~v~~v~~~~~~~~~s~~~-dg~i~iw~~~~~~~~~--~~~~~~~-~h~~~v~~i~~s~~~ 242 (362)
...+.|+|.|+|.++..-. .|.|++++..++.... .+..... ........|+++|+=
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3568899999999776666 5999999765432111 0111111 125667889999873
No 491
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.32 E-value=3.5e+02 Score=22.59 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=16.5
Q ss_pred cCcEEEEecCC--CeEEEeecCCCC
Q 044557 28 AGKFLYTGSSD--NEVRSWDCNTFS 50 (362)
Q Consensus 28 ~~~~l~t~s~D--g~i~vWd~~~~~ 50 (362)
.+.++.+.+.- ..||+||+.++.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq 79 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQ 79 (262)
T ss_pred CCEEEEeccccccceeEEEeccCce
Confidence 36677777754 469999988654
No 492
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=27.21 E-value=2.3e+02 Score=28.89 Aligned_cols=68 Identities=16% Similarity=0.034 Sum_probs=47.6
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEee----e--------------ccCcccEEEEEEcCCCc-EEEE
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESI----T--------------NAHDDAINAVALSDDGD-VYTG 202 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~----~--------------~~h~~~v~~v~~~~~~~-~~s~ 202 (362)
...|.++....-+.+++.+-.||+|.++|-.+.+.+... . -+.-..+..++|||.+- ++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 356788888778889999999999999998776543222 0 01122344588999886 6667
Q ss_pred eCCCeEE
Q 044557 203 SADKKIK 209 (362)
Q Consensus 203 ~~dg~i~ 209 (362)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 7788765
No 493
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=25.77 E-value=2.2e+02 Score=19.88 Aligned_cols=38 Identities=18% Similarity=-0.008 Sum_probs=23.0
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY 200 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~ 200 (362)
..+|.+.-||..+++..--+. .-...+.|++++++.++
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~--~L~fpNGVals~d~~~v 71 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLD--GLYFPNGVALSPDESFV 71 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEE--EESSEEEEEE-TTSSEE
T ss_pred CCCcCEEEEECCCCeEEEehh--CCCccCeEEEcCCCCEE
Confidence 346788889988876422222 12357899999999843
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=25.59 E-value=3.7e+02 Score=22.95 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=43.3
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeC-C--CeEEEEeCCCCCCcceeeh---hhhccccceeEEEEec
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSA-D--KKIKVWRRSPGNKKHSLVD---VLERHNSGINALALSC 240 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~-d--g~i~iw~~~~~~~~~~~~~---~~~~h~~~v~~i~~s~ 240 (362)
+||+.+.+... +.........+-.+.++|+++ +|+. | ..+++++............ .+....-. .....-|
T Consensus 50 ~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY-pT~~~L~ 127 (243)
T PF07250_consen 50 EYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY-PTATTLP 127 (243)
T ss_pred EEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc-ccceECC
Confidence 77877765322 221222222333467889855 4432 2 4688888654111111111 11111111 1233457
Q ss_pred CCCEEEEEcCCCc-EEEEe
Q 044557 241 DGSVLYSGACDRS-IIVWE 258 (362)
Q Consensus 241 ~~~~l~s~~~d~~-i~~wd 258 (362)
||+.|+.||.+.- .-+|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred CCCEEEEeCcCCCcccccC
Confidence 9999999998753 33444
No 495
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=24.85 E-value=6.6e+02 Score=24.55 Aligned_cols=110 Identities=15% Similarity=0.251 Sum_probs=59.9
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCC-ceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSD-FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
|+.+.+..++++- .|+..+-+..|+-++ +-.+........++|..+-=.|++.+..|+.+|.++.= .+.+.....+
T Consensus 378 it~~~~d~~g~lW-lgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~~-pe~~~v~n~l- 454 (671)
T COG3292 378 ITTTLEDSRGRLW-LGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKRD-PESGRVLNLL- 454 (671)
T ss_pred cchhhhccCCcEE-EEecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEeccCCeEecC-ccccchhccc-
Confidence 4455555554433 345554455556555 33444444445667877777788889999999987762 2211111111
Q ss_pred hhhhcc---ccceeEEEEecCCCEEEEEcCCCcEEEEecc
Q 044557 224 DVLERH---NSGINALALSCDGSVLYSGACDRSIIVWEKE 260 (362)
Q Consensus 224 ~~~~~h---~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~ 260 (362)
.+..| .+.|..+.+.|+|+.-+.++ +| |..|+.+
T Consensus 455 -n~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq 491 (671)
T COG3292 455 -NPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQ 491 (671)
T ss_pred -ccccCcCCcchhhhhccCCCCceEEEec-ce-eeeeccc
Confidence 11222 23466777888887543332 22 5677654
No 496
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=24.50 E-value=4.9e+02 Score=29.02 Aligned_cols=149 Identities=12% Similarity=0.205 Sum_probs=81.1
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcc
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
|...++.+.-++++..+=. -|+.++.||....+... .......++..+...-+|.+++ =.|.+ +-|+..+....
T Consensus 361 H~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~~~~~d~~~S~Ls~qgdG~lYA-k~~~~--l~nLSs~~~~~ 434 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-PPDKSDTPFSSLSRQGDGKLYA-KDDDT--LVNLSSGQMSE 434 (1774)
T ss_pred HHHHhhccccCCCCCeEEe--ecCceeeeccccceecC-CCCcccchhhhhcccCCCceEe-cCCCc--eeecCCCCcch
Confidence 4455666767777776643 47778888766543221 1112233455555556666665 22221 22343332111
Q ss_pred eeehhhhccccceeEEEEecCCCE-EEEEcCCCcEEEEeccCCCCc----EEEEEeecCccceeEEEEEeCCeEEEeeCC
Q 044557 221 SLVDVLERHNSGINALALSCDGSV-LYSGACDRSIIVWEKEEDDGN----ILVVGALRGHTKSILCMAVVSDLVCSGSAD 295 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~-l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D 295 (362)
. .-..+.+.+.+++|.. ++++-....+.+|++...... ..+.-.+.+-.....++.++++.|..+..+
T Consensus 435 ~-------~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~drLFvADse 507 (1774)
T PF11725_consen 435 A-------EVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSNDRLFVADSE 507 (1774)
T ss_pred h-------hhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCCeEEEEeCC
Confidence 1 1235677788899987 555555556699988653211 111112222233567788888888888888
Q ss_pred CcEEEee
Q 044557 296 KTIRIWR 302 (362)
Q Consensus 296 ~~i~~W~ 302 (362)
|.++.=+
T Consensus 508 GkLYsa~ 514 (1774)
T PF11725_consen 508 GKLYSAD 514 (1774)
T ss_pred CCEEecc
Confidence 7765444
No 497
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=23.66 E-value=5.3e+02 Score=23.00 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=42.1
Q ss_pred cCCCEEEEEECCCcEEEEECCCceEEEeee-ccCcccEEEEEEcC------CCcEEEEe-CCCeEEEEeCCCCCC
Q 044557 152 KDETLLYSVSWDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSD------DGDVYTGS-ADKKIKVWRRSPGNK 218 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~v~~~~------~~~~~s~~-~dg~i~iw~~~~~~~ 218 (362)
++...=+.|..-|.|-++|.. ++.++.+. .+.-...+.|+..| .|.|+.|. .||+|..||..++..
T Consensus 210 ~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 210 ADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred CcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence 333333445556899999976 44445442 23334567788865 35566654 699999999887753
No 498
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=21.59 E-value=5.8e+02 Score=22.71 Aligned_cols=105 Identities=21% Similarity=0.341 Sum_probs=60.3
Q ss_pred CceeEEEEecCCCEEEEEECCCc------EEEEECCC--c--eEEE-----eeeccCc-------ccEEEEEEcCCCcEE
Q 044557 143 DAVSALALTKDETLLYSVSWDRT------IKIWRTSD--F--KCLE-----SITNAHD-------DAINAVALSDDGDVY 200 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~------i~iwd~~~--~--~~~~-----~~~~~h~-------~~v~~v~~~~~~~~~ 200 (362)
+.+..+.+.|++..+++.|.++. +...++.. . ..+. .+..... -...++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45678888876667777788887 55555443 0 1111 1111111 134578887777766
Q ss_pred EEeC-C------CeEEEEeCCCCCCccee--ehhh---------hccccceeEEEEecCCCEEEEE
Q 044557 201 TGSA-D------KKIKVWRRSPGNKKHSL--VDVL---------ERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 201 s~~~-d------g~i~iw~~~~~~~~~~~--~~~~---------~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
.+.+ + ..|..++.. +.....+ ...+ ...+...-+++++|||+.|+++
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 5554 3 477778765 4432222 1111 1235578899999999977665
No 499
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=21.09 E-value=5.5e+02 Score=22.24 Aligned_cols=183 Identities=15% Similarity=0.184 Sum_probs=91.1
Q ss_pred ceeeeEe-c-CcEEEEecCCC--eEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe-cCCcEEEEec
Q 044557 21 YVSSLAL-A-GKFLYTGSSDN--EVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH-QDHKIRVWKI 95 (362)
Q Consensus 21 ~V~~l~~-~-~~~l~t~s~Dg--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~-~dg~i~~w~~ 95 (362)
--..+.+ . +.++-+.+.-| .||.+|+++........+.. .. -...+...+++++--. .++...+||.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--~~------FgEGit~~~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--RY------FGEGITILGDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--T--------EEEEEEETTEEEEEESSSSEEEEEET
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--cc------cceeEEEECCEEEEEEecCCeEEEEcc
Confidence 3455777 4 56677777665 69999988754221111111 11 1123444566666544 4678888887
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK 175 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 175 (362)
++.+. +...+. ...=..++ .|++.|+.......|..+|.++++
T Consensus 118 ~tl~~-------~~~~~y----------------------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 118 NTLKK-------IGTFPY----------------------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp TTTEE-------EEEEE-----------------------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred ccceE-------EEEEec----------------------------CCcceEEE--cCCCEEEEECCccceEEECCcccc
Confidence 64321 111110 01111222 466677776667789999998887
Q ss_pred EEEeeecc-Ccc---cEEEEEEcCCCcEEE-EeCCCeEEEEeCCCCCCccee-----ehhhh---cc---ccceeEEEEe
Q 044557 176 CLESITNA-HDD---AINAVALSDDGDVYT-GSADKKIKVWRRSPGNKKHSL-----VDVLE---RH---NSGINALALS 239 (362)
Q Consensus 176 ~~~~~~~~-h~~---~v~~v~~~~~~~~~s-~~~dg~i~iw~~~~~~~~~~~-----~~~~~---~h---~~~v~~i~~s 239 (362)
..+.+... ... .++-+.+- +|.+++ .-....|...|..+|.....+ ..... .+ ..-.+.|++.
T Consensus 161 ~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd 239 (264)
T PF05096_consen 161 EVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYD 239 (264)
T ss_dssp EEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEE
T ss_pred eEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEe
Confidence 66655322 111 23445554 465444 334455666677776532211 11000 01 2346889998
Q ss_pred cCCCEEEEEc
Q 044557 240 CDGSVLYSGA 249 (362)
Q Consensus 240 ~~~~~l~s~~ 249 (362)
|....++..|
T Consensus 240 ~~~~~l~vTG 249 (264)
T PF05096_consen 240 PETDRLFVTG 249 (264)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEe
Confidence 8776655444
No 500
>PRK10115 protease 2; Provisional
Probab=21.07 E-value=8.6e+02 Score=24.50 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=42.6
Q ss_pred cEEEEEEcCCCcEEE--Ee----CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC------CcE
Q 044557 187 AINAVALSDDGDVYT--GS----ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD------RSI 254 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s--~~----~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d------~~i 254 (362)
.+..+.++|+|++++ .. ..-.|++.|+.++...... +.. .. ..++|++|++.|+....+ ..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~---i~~--~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL---LDN--VE-PSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc---ccC--cc-eEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 466678899998433 22 2336888888776422111 111 11 458999999877766543 356
Q ss_pred EEEeccCC
Q 044557 255 IVWEKEED 262 (362)
Q Consensus 255 ~~wd~~~~ 262 (362)
+.+++.++
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 77777665
Done!