Query 044557
Match_columns 362
No_of_seqs 234 out of 1755
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:18:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1.6E-45 5.5E-50 327.8 37.0 288 9-357 22-320 (321)
2 1vyh_C Platelet-activating fac 100.0 2.6E-44 9E-49 330.8 36.1 284 11-357 100-410 (410)
3 2hes_X YDR267CP; beta-propelle 100.0 1.1E-43 3.6E-48 317.4 37.6 309 8-358 3-328 (330)
4 1got_B GT-beta; complex (GTP-b 100.0 2.6E-43 9E-48 316.1 39.5 290 8-355 44-340 (340)
5 4gqb_B Methylosome protein 50; 100.0 9.8E-44 3.3E-48 319.0 35.5 295 15-358 26-331 (344)
6 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-43 8.7E-48 316.9 37.9 303 8-359 4-336 (345)
7 2ynn_A Coatomer subunit beta'; 100.0 7E-43 2.4E-47 308.5 37.3 289 9-357 3-301 (304)
8 2pbi_B Guanine nucleotide-bind 100.0 3E-42 1E-46 310.9 39.7 294 7-355 52-354 (354)
9 4g56_B MGC81050 protein; prote 100.0 2.4E-42 8.1E-47 311.9 35.3 292 15-359 38-344 (357)
10 2xzm_R RACK1; ribosome, transl 100.0 1.4E-41 4.6E-46 305.3 37.5 297 8-358 10-340 (343)
11 3iz6_a 40S ribosomal protein R 100.0 1.9E-42 6.6E-47 315.2 30.6 299 7-359 54-376 (380)
12 1nr0_A Actin interacting prote 100.0 3E-41 1E-45 325.8 36.9 333 8-358 179-611 (611)
13 4ery_A WD repeat-containing pr 100.0 1.2E-40 4.2E-45 294.9 37.1 292 4-357 8-311 (312)
14 3frx_A Guanine nucleotide-bind 100.0 2E-40 7E-45 294.7 36.7 288 9-357 7-316 (319)
15 1erj_A Transcriptional repress 100.0 4.1E-40 1.4E-44 301.2 37.8 298 17-358 62-389 (393)
16 4aow_A Guanine nucleotide-bind 100.0 1.8E-39 6.1E-44 290.1 36.6 291 10-358 29-337 (340)
17 1nr0_A Actin interacting prote 100.0 1.9E-39 6.6E-44 313.2 37.2 295 8-358 48-355 (611)
18 2ymu_A WD-40 repeat protein; u 100.0 3.4E-39 1.1E-43 309.1 36.9 279 8-355 292-577 (577)
19 4h5i_A Guanine nucleotide-exch 100.0 8.1E-39 2.8E-43 289.6 32.7 298 20-357 15-342 (365)
20 2pm7_B Protein transport prote 100.0 7.4E-38 2.5E-42 275.3 33.9 254 12-358 2-285 (297)
21 2ynn_A Coatomer subunit beta'; 100.0 9.9E-38 3.4E-42 275.5 34.0 243 64-358 9-259 (304)
22 3dm0_A Maltose-binding peripla 100.0 1.2E-37 4E-42 305.2 36.8 290 10-357 373-692 (694)
23 2ymu_A WD-40 repeat protein; u 100.0 1.9E-37 6.4E-42 297.0 37.5 282 8-358 251-539 (577)
24 1sq9_A Antiviral protein SKI8; 100.0 1.8E-37 6.2E-42 283.2 33.1 307 9-357 6-394 (397)
25 3ei3_B DNA damage-binding prot 100.0 6.9E-37 2.3E-41 278.5 34.3 296 8-358 62-382 (383)
26 1k8k_C P40, ARP2/3 complex 41 100.0 8.8E-37 3E-41 276.0 34.7 294 15-357 4-360 (372)
27 3odt_A Protein DOA1; ubiquitin 100.0 3.1E-36 1.1E-40 265.8 36.9 285 7-359 6-297 (313)
28 3dwl_C Actin-related protein 2 100.0 4.8E-38 1.6E-42 285.3 25.6 298 14-356 6-377 (377)
29 1vyh_C Platelet-activating fac 100.0 5.9E-37 2E-41 281.8 33.2 242 63-358 103-369 (410)
30 3k26_A Polycomb protein EED; W 100.0 1.7E-36 5.7E-41 273.3 34.7 294 15-357 14-365 (366)
31 3ow8_A WD repeat-containing pr 100.0 1.2E-36 4.1E-41 270.6 32.0 241 11-303 72-319 (321)
32 2hes_X YDR267CP; beta-propelle 100.0 1.9E-36 6.4E-41 270.4 33.4 251 64-357 10-279 (330)
33 1gxr_A ESG1, transducin-like e 100.0 2.4E-35 8.1E-40 262.7 39.3 284 15-358 47-337 (337)
34 3gre_A Serine/threonine-protei 100.0 1.2E-36 4.1E-41 281.8 31.6 307 7-355 50-437 (437)
35 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.2E-36 2.5E-40 277.3 36.7 280 9-358 108-391 (445)
36 3i2n_A WD repeat-containing pr 100.0 2.1E-36 7.3E-41 271.8 32.0 294 10-359 9-354 (357)
37 3bg1_A Protein SEC13 homolog; 100.0 3.4E-37 1.2E-41 273.5 25.9 251 14-357 8-292 (316)
38 1p22_A F-BOX/WD-repeat protein 100.0 5.2E-36 1.8E-40 277.6 33.5 281 12-359 126-415 (435)
39 1got_B GT-beta; complex (GTP-b 100.0 8.3E-36 2.8E-40 267.3 33.7 249 8-302 86-340 (340)
40 4gqb_B Methylosome protein 50; 100.0 6.9E-36 2.4E-40 268.0 32.7 242 16-305 79-331 (344)
41 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3E-35 1E-39 273.2 38.1 284 8-359 148-443 (445)
42 3v7d_B Cell division control p 100.0 2.8E-35 9.5E-40 274.7 36.3 282 11-358 113-421 (464)
43 3fm0_A Protein CIAO1; WDR39,SG 100.0 2E-35 6.7E-40 265.4 32.8 247 67-357 14-282 (345)
44 4e54_B DNA damage-binding prot 100.0 1.3E-36 4.3E-41 281.8 25.5 291 9-357 109-429 (435)
45 3zwl_B Eukaryotic translation 100.0 4.3E-35 1.5E-39 264.1 34.9 285 10-358 23-346 (369)
46 2j04_B YDR362CP, TAU91; beta p 100.0 2E-36 6.8E-41 285.1 23.4 294 13-358 201-517 (524)
47 4a11_B DNA excision repair pro 100.0 1.2E-34 4.1E-39 264.9 33.9 304 8-358 32-365 (408)
48 1r5m_A SIR4-interacting protei 100.0 7.1E-35 2.4E-39 267.7 31.5 293 10-357 34-360 (425)
49 2pm9_A Protein WEB1, protein t 100.0 2.5E-35 8.7E-40 270.6 27.2 296 17-358 65-414 (416)
50 3jrp_A Fusion protein of prote 100.0 1.6E-34 5.4E-39 261.5 31.6 255 10-357 2-286 (379)
51 4ggc_A P55CDC, cell division c 100.0 1E-33 3.4E-38 250.4 35.1 293 5-357 7-314 (318)
52 2pm9_A Protein WEB1, protein t 100.0 4.4E-35 1.5E-39 268.9 26.5 292 18-359 11-338 (416)
53 4aez_A CDC20, WD repeat-contai 100.0 7.1E-34 2.4E-38 260.5 34.3 280 16-358 88-380 (401)
54 4g56_B MGC81050 protein; prote 100.0 7.8E-35 2.7E-39 262.7 27.3 268 31-358 18-301 (357)
55 2pbi_B Guanine nucleotide-bind 100.0 1.1E-33 3.8E-38 254.9 34.6 251 8-302 95-354 (354)
56 3vl1_A 26S proteasome regulato 100.0 3.6E-34 1.2E-38 263.4 31.7 279 21-359 58-366 (420)
57 4gga_A P55CDC, cell division c 100.0 7.3E-34 2.5E-38 262.0 33.5 277 21-357 107-394 (420)
58 3vl1_A 26S proteasome regulato 100.0 8.9E-34 3E-38 260.8 34.0 293 10-359 89-420 (420)
59 1yfq_A Cell cycle arrest prote 100.0 4.6E-34 1.6E-38 255.3 30.2 282 11-355 3-321 (342)
60 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-33 4.3E-38 252.0 31.5 300 13-359 5-338 (351)
61 3iz6_a 40S ribosomal protein R 100.0 2E-34 6.9E-39 262.2 25.4 265 8-304 97-374 (380)
62 1pgu_A Actin interacting prote 100.0 4.8E-33 1.6E-37 267.9 36.3 323 9-357 150-613 (615)
63 2xzm_R RACK1; ribosome, transl 100.0 4.7E-33 1.6E-37 249.7 33.7 249 63-358 16-285 (343)
64 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-33 4.7E-38 293.0 34.8 245 11-303 607-911 (1249)
65 2oaj_A Protein SNI1; WD40 repe 100.0 5.9E-33 2E-37 278.0 37.6 321 17-359 56-606 (902)
66 3mkq_A Coatomer beta'-subunit; 100.0 4.1E-33 1.4E-37 277.4 36.3 289 9-358 3-302 (814)
67 1erj_A Transcriptional repress 100.0 2.7E-33 9.2E-38 256.0 32.1 235 21-303 125-387 (393)
68 1r5m_A SIR4-interacting protei 100.0 1.4E-33 4.6E-38 259.2 30.2 289 18-357 107-424 (425)
69 3frx_A Guanine nucleotide-bind 100.0 4.8E-33 1.6E-37 247.1 32.7 243 64-358 13-267 (319)
70 4ery_A WD repeat-containing pr 100.0 9.1E-33 3.1E-37 244.3 32.6 245 65-359 20-269 (312)
71 2oaj_A Protein SNI1; WD40 repe 100.0 6.4E-33 2.2E-37 277.7 33.1 335 13-356 145-659 (902)
72 3v7d_B Cell division control p 100.0 4E-32 1.4E-36 253.3 36.1 306 8-358 151-463 (464)
73 2pm7_B Protein transport prote 100.0 4.4E-33 1.5E-37 244.8 27.4 209 139-358 6-238 (297)
74 3dw8_B Serine/threonine-protei 100.0 1.3E-32 4.6E-37 254.9 30.2 318 17-357 26-445 (447)
75 2j04_B YDR362CP, TAU91; beta p 100.0 5.1E-34 1.7E-38 268.7 20.8 231 80-359 175-429 (524)
76 3mmy_A MRNA export factor; mRN 100.0 2.9E-32 9.9E-37 245.5 29.8 291 7-356 27-344 (368)
77 1pgu_A Actin interacting prote 100.0 4.8E-32 1.6E-36 260.9 33.1 274 10-329 54-349 (615)
78 4h5i_A Guanine nucleotide-exch 100.0 1.5E-32 5.2E-37 248.4 27.7 252 13-304 67-342 (365)
79 3sfz_A APAF-1, apoptotic pepti 100.0 3.3E-32 1.1E-36 282.6 32.9 202 140-358 838-1116(1249)
80 1gxr_A ESG1, transducin-like e 100.0 2E-31 6.8E-36 237.3 32.3 280 18-358 8-296 (337)
81 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-32 6.1E-37 253.6 26.2 267 16-357 12-296 (588)
82 2aq5_A Coronin-1A; WD40 repeat 100.0 3.4E-31 1.2E-35 242.6 34.3 287 22-358 37-342 (402)
83 3bg1_A Protein SEC13 homolog; 100.0 7.2E-33 2.5E-37 245.6 22.1 211 139-358 10-247 (316)
84 3jro_A Fusion protein of prote 100.0 2.7E-32 9.3E-37 269.1 27.7 254 12-358 2-285 (753)
85 3dm0_A Maltose-binding peripla 100.0 3.6E-31 1.2E-35 259.1 33.5 248 63-358 377-632 (694)
86 3dwl_C Actin-related protein 2 100.0 3E-32 1E-36 247.1 23.9 247 66-357 9-280 (377)
87 4gq1_A NUP37; propeller, trans 100.0 1.2E-31 4E-36 245.1 26.5 232 80-357 103-388 (393)
88 1k8k_C P40, ARP2/3 complex 41 100.0 7.9E-31 2.7E-35 236.9 31.2 250 65-358 5-274 (372)
89 4aez_A CDC20, WD repeat-contai 100.0 1.2E-30 4E-35 239.0 32.7 247 9-305 123-380 (401)
90 4gga_A P55CDC, cell division c 100.0 1.3E-30 4.5E-35 240.2 33.1 260 9-322 135-410 (420)
91 3lrv_A PRE-mRNA-splicing facto 100.0 2.1E-31 7.1E-36 238.9 24.9 273 28-355 47-330 (343)
92 3k26_A Polycomb protein EED; W 100.0 1.5E-31 5E-36 240.9 23.9 255 66-358 16-318 (366)
93 1p22_A F-BOX/WD-repeat protein 100.0 3.8E-30 1.3E-34 238.2 31.8 232 68-357 133-364 (435)
94 3odt_A Protein DOA1; ubiquitin 100.0 1E-29 3.6E-34 223.9 33.1 245 8-305 48-296 (313)
95 4aow_A Guanine nucleotide-bind 100.0 1.9E-29 6.6E-34 224.9 33.9 245 64-358 34-286 (340)
96 3vu4_A KMHSV2; beta-propeller 100.0 3.7E-30 1.3E-34 231.9 29.2 282 8-357 8-335 (355)
97 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-29 4.4E-34 252.1 34.5 246 8-303 44-300 (814)
98 3gre_A Serine/threonine-protei 100.0 3.4E-30 1.2E-34 238.4 27.3 251 17-302 109-437 (437)
99 1sq9_A Antiviral protein SKI8; 100.0 4.1E-30 1.4E-34 234.4 27.0 249 65-358 13-322 (397)
100 4ggc_A P55CDC, cell division c 100.0 6E-29 2E-33 219.6 33.5 247 8-305 54-315 (318)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-29 3.7E-34 232.6 29.4 263 10-311 72-348 (402)
102 2xyi_A Probable histone-bindin 100.0 1.1E-29 3.7E-34 234.8 28.8 257 65-358 125-410 (430)
103 3i2n_A WD repeat-containing pr 100.0 7.5E-30 2.6E-34 229.0 26.6 246 65-359 15-292 (357)
104 3dw8_B Serine/threonine-protei 100.0 2.1E-30 7E-35 240.2 23.5 256 68-358 28-373 (447)
105 3zwl_B Eukaryotic translation 100.0 1.2E-28 4.2E-33 221.8 34.2 255 7-304 62-345 (369)
106 3ei3_B DNA damage-binding prot 100.0 1.8E-29 6E-34 229.5 28.3 250 65-358 70-339 (383)
107 2xyi_A Probable histone-bindin 100.0 4.5E-29 1.5E-33 230.7 30.1 261 13-304 122-409 (430)
108 2w18_A PALB2, fancn, partner a 100.0 4.6E-29 1.6E-33 217.5 27.4 190 152-357 143-356 (356)
109 4e54_B DNA damage-binding prot 100.0 3E-30 1E-34 238.9 20.5 205 138-358 115-327 (435)
110 1yfq_A Cell cycle arrest prote 100.0 1.6E-28 5.6E-33 219.2 28.2 241 67-358 10-282 (342)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-27 3.4E-32 222.9 34.4 238 70-358 104-391 (450)
112 3jrp_A Fusion protein of prote 100.0 9.6E-29 3.3E-33 223.5 26.7 210 138-358 7-240 (379)
113 4a11_B DNA excision repair pro 100.0 1.2E-27 4.2E-32 218.4 31.0 281 16-357 96-404 (408)
114 3mmy_A MRNA export factor; mRN 100.0 1.6E-27 5.3E-32 214.5 31.0 243 66-358 37-304 (368)
115 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-28 1.3E-32 216.5 24.3 215 139-359 8-250 (351)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.8E-27 9.5E-32 219.9 30.3 203 140-356 100-337 (450)
117 2j04_A TAU60, YPL007P, hypothe 100.0 7.8E-28 2.7E-32 222.7 24.8 270 9-346 42-349 (588)
118 3lrv_A PRE-mRNA-splicing facto 100.0 4E-28 1.4E-32 217.5 21.6 226 78-358 48-292 (343)
119 3jro_A Fusion protein of prote 100.0 2.9E-27 9.8E-32 233.3 23.1 211 138-359 5-239 (753)
120 3bws_A Protein LP49; two-domai 100.0 4.9E-25 1.7E-29 203.3 35.2 286 10-357 114-431 (433)
121 1l0q_A Surface layer protein; 100.0 1.1E-24 3.7E-29 198.3 36.0 261 30-358 3-275 (391)
122 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-25 4.2E-30 202.4 29.3 233 66-359 17-272 (355)
123 2w18_A PALB2, fancn, partner a 100.0 4.6E-26 1.6E-30 198.7 25.3 159 139-303 175-355 (356)
124 4gq1_A NUP37; propeller, trans 99.9 1.4E-26 4.7E-31 211.5 22.2 227 29-302 101-386 (393)
125 1l0q_A Surface layer protein; 99.9 2.1E-23 7.2E-28 189.8 37.0 290 8-357 21-341 (391)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.7E-23 3.3E-27 187.2 29.7 195 139-358 175-387 (415)
127 3bws_A Protein LP49; two-domai 99.9 3.8E-23 1.3E-27 190.6 24.9 245 71-358 125-390 (433)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 8E-22 2.7E-26 181.1 30.9 262 8-330 104-409 (415)
129 1ri6_A Putative isomerase YBHE 99.9 8.6E-21 2.9E-25 168.9 31.4 278 31-357 7-307 (343)
130 1nir_A Nitrite reductase; hemo 99.9 4.1E-21 1.4E-25 182.0 30.6 276 21-358 141-458 (543)
131 1nir_A Nitrite reductase; hemo 99.9 2.4E-20 8.1E-25 176.8 29.4 305 8-358 168-514 (543)
132 3u4y_A Uncharacterized protein 99.9 1.8E-19 6.2E-24 159.9 31.6 277 29-360 10-306 (331)
133 3hfq_A Uncharacterized protein 99.9 6.2E-19 2.1E-23 157.7 34.7 276 36-358 13-317 (347)
134 2ecf_A Dipeptidyl peptidase IV 99.9 6.9E-20 2.4E-24 180.4 28.2 285 19-358 36-413 (741)
135 1ri6_A Putative isomerase YBHE 99.9 2.9E-18 9.9E-23 152.5 31.6 276 17-332 35-336 (343)
136 2ojh_A Uncharacterized protein 99.9 1.3E-19 4.3E-24 157.5 21.9 244 34-330 17-283 (297)
137 2z3z_A Dipeptidyl aminopeptida 99.8 2E-19 7E-24 176.1 25.0 291 11-357 19-390 (706)
138 2oit_A Nucleoporin 214KDA; NH2 99.8 1E-19 3.6E-24 167.8 20.7 199 144-358 38-278 (434)
139 2oit_A Nucleoporin 214KDA; NH2 99.8 2E-19 6.8E-24 165.9 21.9 160 140-305 90-278 (434)
140 2ojh_A Uncharacterized protein 99.8 4.6E-19 1.6E-23 153.9 21.7 199 140-358 39-258 (297)
141 3scy_A Hypothetical bacterial 99.8 8.9E-17 3E-21 144.5 34.3 284 18-327 48-360 (361)
142 2z3z_A Dipeptidyl aminopeptida 99.8 6E-18 2.1E-22 165.7 28.4 290 20-358 82-435 (706)
143 1pby_B Quinohemoprotein amine 99.8 1E-17 3.4E-22 148.6 25.2 265 30-358 2-310 (337)
144 1k32_A Tricorn protease; prote 99.8 1.1E-17 3.6E-22 170.9 28.3 287 11-356 195-500 (1045)
145 3o4h_A Acylamino-acid-releasin 99.8 3.1E-18 1.1E-22 164.1 22.3 270 11-357 12-314 (582)
146 2ecf_A Dipeptidyl peptidase IV 99.8 2.1E-17 7.3E-22 162.6 25.3 290 21-357 110-458 (741)
147 3vgz_A Uncharacterized protein 99.8 3E-16 1E-20 140.1 30.5 268 19-331 40-326 (353)
148 1xfd_A DIP, dipeptidyl aminope 99.8 1.4E-17 4.8E-22 163.5 23.4 284 20-358 17-393 (723)
149 1k32_A Tricorn protease; prote 99.8 5.1E-17 1.8E-21 165.8 27.7 273 18-358 294-637 (1045)
150 3scy_A Hypothetical bacterial 99.8 9.7E-16 3.3E-20 137.7 32.9 273 36-358 24-337 (361)
151 3u4y_A Uncharacterized protein 99.8 1.6E-16 5.5E-21 140.8 27.0 228 81-358 13-252 (331)
152 3hfq_A Uncharacterized protein 99.8 4E-16 1.4E-20 139.4 28.8 257 17-304 37-316 (347)
153 3vgz_A Uncharacterized protein 99.8 7.4E-16 2.5E-20 137.5 28.8 198 144-358 90-303 (353)
154 1xfd_A DIP, dipeptidyl aminope 99.7 5.9E-16 2E-20 151.9 26.8 286 9-331 47-422 (723)
155 1z68_A Fibroblast activation p 99.7 1.3E-16 4.6E-21 156.5 21.8 273 24-358 20-391 (719)
156 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.5E-15 5E-20 136.9 26.5 247 70-358 41-341 (365)
157 1jmx_B Amine dehydrogenase; ox 99.7 1.5E-15 5.2E-20 135.2 24.3 223 80-358 13-325 (349)
158 3o4h_A Acylamino-acid-releasin 99.7 8.2E-16 2.8E-20 147.2 17.6 226 69-356 22-274 (582)
159 1pby_B Quinohemoprotein amine 99.7 3.1E-15 1.1E-19 132.4 20.1 220 80-358 3-269 (337)
160 1jmx_B Amine dehydrogenase; ox 99.7 1.7E-14 5.7E-19 128.4 22.4 238 28-315 10-333 (349)
161 1z68_A Fibroblast activation p 99.7 1E-15 3.5E-20 150.2 14.8 200 144-357 61-345 (719)
162 1q7f_A NHL, brain tumor CG1071 99.6 7.5E-13 2.6E-17 114.7 30.3 193 143-357 77-279 (286)
163 3azo_A Aminopeptidase; POP fam 99.6 5.7E-14 1.9E-18 136.4 25.3 200 142-357 129-366 (662)
164 1jof_A Carboxy-CIS,CIS-muconat 99.6 4.6E-14 1.6E-18 127.1 22.7 202 144-357 41-290 (365)
165 3pe7_A Oligogalacturonate lyas 99.6 6.4E-13 2.2E-17 120.2 28.1 288 9-359 20-383 (388)
166 3fvz_A Peptidyl-glycine alpha- 99.6 1.3E-11 4.6E-16 109.3 30.4 204 142-359 90-323 (329)
167 3azo_A Aminopeptidase; POP fam 99.5 6.9E-12 2.4E-16 121.7 26.6 153 143-303 188-365 (662)
168 4a5s_A Dipeptidyl peptidase 4 99.5 2.3E-12 8E-17 126.8 22.9 200 146-358 65-353 (740)
169 2oiz_A Aromatic amine dehydrog 99.5 4.3E-11 1.5E-15 107.4 28.2 263 37-358 29-334 (361)
170 2dg1_A DRP35, lactonase; beta 99.5 5.7E-11 1.9E-15 105.1 28.3 255 20-329 6-290 (333)
171 1q7f_A NHL, brain tumor CG1071 99.5 3.6E-11 1.2E-15 104.0 24.9 198 141-358 28-238 (286)
172 3fvz_A Peptidyl-glycine alpha- 99.5 2.5E-11 8.5E-16 107.5 24.3 209 142-357 23-276 (329)
173 2gop_A Trilobed protease; beta 99.5 5.8E-11 2E-15 105.6 26.3 181 145-357 106-330 (347)
174 4a5s_A Dipeptidyl peptidase 4 99.5 4.4E-12 1.5E-16 124.8 20.5 198 144-358 18-294 (740)
175 3dsm_A Uncharacterized protein 99.4 7.7E-11 2.6E-15 104.3 26.0 265 36-358 14-302 (328)
176 3e5z_A Putative gluconolactona 99.4 1.6E-10 5.3E-15 100.6 27.3 172 143-327 69-264 (296)
177 3c5m_A Oligogalacturonate lyas 99.4 8.4E-12 2.9E-16 112.9 19.2 301 10-359 21-383 (396)
178 3pe7_A Oligogalacturonate lyas 99.4 8.5E-11 2.9E-15 106.1 23.2 195 145-358 83-329 (388)
179 2bkl_A Prolyl endopeptidase; m 99.4 5.2E-11 1.8E-15 116.3 23.2 195 146-358 171-397 (695)
180 2xdw_A Prolyl endopeptidase; a 99.4 4.9E-11 1.7E-15 116.8 22.9 199 144-356 126-364 (710)
181 2oiz_A Aromatic amine dehydrog 99.4 5.7E-10 1.9E-14 100.1 26.6 270 9-330 41-359 (361)
182 2z2n_A Virginiamycin B lyase; 99.3 3.4E-08 1.2E-12 85.3 36.0 278 15-357 10-294 (299)
183 2bkl_A Prolyl endopeptidase; m 99.3 2.4E-11 8.4E-16 118.6 17.4 200 141-357 119-348 (695)
184 2xdw_A Prolyl endopeptidase; a 99.3 9.6E-10 3.3E-14 107.6 28.0 199 145-358 173-414 (710)
185 1rwi_B Serine/threonine-protei 99.3 1.1E-09 3.9E-14 93.5 25.0 195 144-359 68-265 (270)
186 2gop_A Trilobed protease; beta 99.3 1.2E-09 4.1E-14 97.0 26.0 182 144-357 60-290 (347)
187 2dg1_A DRP35, lactonase; beta 99.3 1.9E-09 6.3E-14 95.3 26.3 199 141-357 43-262 (333)
188 3e5z_A Putative gluconolactona 99.3 6.6E-10 2.3E-14 96.6 22.9 196 141-357 26-245 (296)
189 3no2_A Uncharacterized protein 99.3 1.5E-09 5.3E-14 93.4 24.1 205 80-330 7-224 (276)
190 1rwi_B Serine/threonine-protei 99.3 3.2E-09 1.1E-13 90.6 24.8 249 4-304 6-263 (270)
191 1yr2_A Prolyl oligopeptidase; 99.2 1.1E-08 3.8E-13 100.6 30.3 196 146-358 212-441 (741)
192 1xip_A Nucleoporin NUP159; bet 99.2 3.6E-10 1.2E-14 101.3 17.8 168 144-330 39-225 (388)
193 3g4e_A Regucalcin; six bladed 99.2 9.7E-08 3.3E-12 83.0 31.5 181 143-331 54-254 (297)
194 1qks_A Cytochrome CD1 nitrite 99.2 5.4E-08 1.8E-12 92.1 31.3 278 22-358 160-477 (567)
195 3no2_A Uncharacterized protein 99.2 1.7E-09 5.8E-14 93.1 19.1 183 153-357 4-194 (276)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 5.2E-08 1.8E-12 85.0 28.7 198 143-359 71-300 (314)
197 1yr2_A Prolyl oligopeptidase; 99.2 2.1E-09 7.1E-14 105.8 21.7 199 143-357 163-392 (741)
198 2z2n_A Virginiamycin B lyase; 99.2 2.7E-07 9.2E-12 79.6 32.7 193 143-356 57-253 (299)
199 3dsm_A Uncharacterized protein 99.2 2.9E-08 1E-12 87.7 26.3 243 20-314 44-308 (328)
200 1xip_A Nucleoporin NUP159; bet 99.2 2E-09 6.7E-14 96.5 18.7 182 21-249 39-232 (388)
201 2qc5_A Streptogramin B lactona 99.1 1E-06 3.4E-11 76.0 34.2 259 17-329 17-282 (300)
202 3c5m_A Oligogalacturonate lyas 99.1 1.3E-09 4.4E-14 98.4 16.0 186 148-358 86-329 (396)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 3E-08 1E-12 86.5 24.3 198 143-357 18-255 (314)
204 3iuj_A Prolyl endopeptidase; h 99.1 1E-08 3.5E-13 100.0 19.9 200 142-357 128-358 (693)
205 1qks_A Cytochrome CD1 nitrite 99.1 5.8E-08 2E-12 91.9 24.3 191 151-358 164-373 (567)
206 3hrp_A Uncharacterized protein 99.0 1.3E-07 4.6E-12 86.0 23.6 196 143-356 131-352 (409)
207 2ghs_A AGR_C_1268P; regucalcin 99.0 9.8E-07 3.4E-11 77.7 28.4 175 143-329 90-282 (326)
208 2qc5_A Streptogramin B lactona 99.0 2.9E-06 9.8E-11 73.1 30.9 195 143-357 62-259 (300)
209 3hrp_A Uncharacterized protein 99.0 4E-07 1.4E-11 82.9 25.7 193 148-356 176-408 (409)
210 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.7E-06 5.7E-11 77.7 26.6 267 25-355 99-375 (376)
211 3g4e_A Regucalcin; six bladed 98.9 2.1E-06 7.1E-11 74.5 25.9 229 19-295 12-263 (297)
212 2hz6_A Endoplasmic reticulum t 98.9 1E-09 3.4E-14 98.8 4.1 188 76-315 7-200 (369)
213 3dr2_A Exported gluconolactona 98.9 9.9E-07 3.4E-11 76.8 23.1 172 143-329 86-287 (305)
214 2mad_H Methylamine dehydrogena 98.8 4.6E-05 1.6E-09 68.2 32.1 193 145-358 127-350 (373)
215 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2.6E-05 9E-10 69.8 29.4 275 25-357 49-336 (376)
216 2ghs_A AGR_C_1268P; regucalcin 98.7 4.3E-06 1.5E-10 73.5 23.4 193 146-357 52-259 (326)
217 1kb0_A Quinohemoprotein alcoho 98.7 7E-06 2.4E-10 79.6 25.6 271 24-315 123-515 (677)
218 3sjl_D Methylamine dehydrogena 98.7 2.9E-05 1E-09 69.3 27.2 274 28-357 43-362 (386)
219 1yiq_A Quinohemoprotein alcoho 98.6 2.9E-05 9.9E-10 75.5 27.9 273 25-315 117-513 (689)
220 2hz6_A Endoplasmic reticulum t 98.6 2.1E-08 7.1E-13 90.1 3.8 181 153-357 8-191 (369)
221 2qe8_A Uncharacterized protein 98.6 2.2E-06 7.4E-11 76.0 16.9 188 141-329 65-301 (343)
222 3hxj_A Pyrrolo-quinoline quino 98.6 1.1E-05 3.8E-10 70.6 21.4 184 145-357 139-323 (330)
223 2iwa_A Glutamine cyclotransfer 98.6 7.2E-05 2.5E-09 63.2 25.2 193 145-356 23-235 (266)
224 3dr2_A Exported gluconolactona 98.6 1.6E-05 5.4E-10 69.1 21.7 152 142-304 44-223 (305)
225 3sjl_D Methylamine dehydrogena 98.6 3.1E-05 1.1E-09 69.1 23.3 147 149-304 39-207 (386)
226 3nol_A Glutamine cyclotransfer 98.5 5.2E-05 1.8E-09 63.5 22.8 183 145-346 45-244 (262)
227 2qe8_A Uncharacterized protein 98.5 2.2E-05 7.6E-10 69.5 21.1 119 143-262 17-155 (343)
228 3c75_H MADH, methylamine dehyd 98.5 7.7E-05 2.6E-09 67.7 24.6 195 146-358 180-402 (426)
229 3iuj_A Prolyl endopeptidase; h 98.5 3E-05 1E-09 75.5 23.5 193 146-357 178-404 (693)
230 3hxj_A Pyrrolo-quinoline quino 98.4 1.7E-05 5.8E-10 69.3 17.9 175 154-356 107-282 (330)
231 1yiq_A Quinohemoprotein alcoho 98.4 0.00015 5.2E-09 70.4 25.1 205 28-263 69-340 (689)
232 3nol_A Glutamine cyclotransfer 98.4 0.00014 4.8E-09 60.8 20.8 197 6-250 28-244 (262)
233 2ece_A 462AA long hypothetical 98.4 0.00014 4.6E-09 65.8 22.0 116 147-262 192-353 (462)
234 2mad_H Methylamine dehydrogena 98.3 0.00024 8.4E-09 63.5 23.9 143 151-303 29-194 (373)
235 1kb0_A Quinohemoprotein alcoho 98.3 0.00023 7.9E-09 69.0 24.8 204 28-263 76-348 (677)
236 3nok_A Glutaminyl cyclase; bet 98.3 0.00023 8E-09 59.6 21.2 192 10-250 44-254 (268)
237 2iwa_A Glutamine cyclotransfer 98.3 0.00061 2.1E-08 57.5 23.5 209 6-261 6-237 (266)
238 3mbr_X Glutamine cyclotransfer 98.3 0.00041 1.4E-08 57.5 21.8 183 144-347 22-224 (243)
239 2ece_A 462AA long hypothetical 98.3 0.00029 9.8E-09 63.7 22.2 192 152-357 93-351 (462)
240 1mda_H Methylamine dehydrogena 98.2 7.8E-05 2.7E-09 66.4 17.7 265 30-358 33-346 (368)
241 3nok_A Glutaminyl cyclase; bet 98.2 0.00038 1.3E-08 58.3 20.4 181 145-346 57-254 (268)
242 4a2l_A BT_4663, two-component 98.1 0.0085 2.9E-07 59.1 31.3 179 143-327 310-506 (795)
243 1kv9_A Type II quinohemoprotei 98.1 0.002 6.8E-08 62.3 25.2 275 25-315 113-496 (668)
244 3mbr_X Glutamine cyclotransfer 98.1 0.0022 7.6E-08 53.1 21.7 197 6-250 6-223 (243)
245 2xe4_A Oligopeptidase B; hydro 98.0 0.00019 6.6E-09 70.4 16.9 199 144-356 175-396 (751)
246 4a2l_A BT_4663, two-component 97.9 0.019 6.5E-07 56.6 31.7 269 20-327 310-594 (795)
247 2ad6_A Methanol dehydrogenase 97.9 0.015 5.3E-07 54.9 28.1 160 148-315 240-502 (571)
248 2fp8_A Strictosidine synthase; 97.9 0.0075 2.6E-07 52.4 23.8 190 144-357 81-312 (322)
249 2fp8_A Strictosidine synthase; 97.8 0.0029 9.9E-08 55.1 19.5 154 144-304 20-215 (322)
250 1kv9_A Type II quinohemoprotei 97.8 0.0064 2.2E-07 58.8 23.5 203 28-263 65-335 (668)
251 3c75_H MADH, methylamine dehyd 97.8 0.0014 4.8E-08 59.4 16.8 109 151-262 81-210 (426)
252 1w6s_A Methanol dehydrogenase 97.7 0.041 1.4E-06 52.3 26.1 72 147-219 245-346 (599)
253 1mda_H Methylamine dehydrogena 97.6 0.011 3.9E-07 52.4 20.4 157 156-327 177-365 (368)
254 1k3i_A Galactose oxidase precu 97.5 0.033 1.1E-06 53.7 24.3 162 147-312 291-504 (656)
255 3qqz_A Putative uncharacterize 97.5 0.029 1E-06 46.9 25.5 187 142-330 26-235 (255)
256 1npe_A Nidogen, entactin; glyc 97.5 0.035 1.2E-06 46.6 29.9 174 144-329 80-261 (267)
257 1flg_A Protein (quinoprotein e 97.4 0.082 2.8E-06 50.1 27.5 71 147-218 250-358 (582)
258 1fwx_A Nitrous oxide reductase 97.4 0.012 4.2E-07 55.0 18.6 193 151-358 98-361 (595)
259 1npe_A Nidogen, entactin; glyc 97.3 0.053 1.8E-06 45.5 26.1 192 144-357 37-237 (267)
260 1k3i_A Galactose oxidase precu 97.3 0.0077 2.6E-07 58.1 16.8 70 147-216 247-324 (656)
261 2xbg_A YCF48-like protein; pho 97.3 0.07 2.4E-06 46.4 29.2 191 145-356 124-320 (327)
262 2p4o_A Hypothetical protein; p 97.3 0.069 2.4E-06 45.8 22.7 156 143-304 32-197 (306)
263 3pbp_A Nucleoporin NUP82; beta 97.3 0.043 1.5E-06 49.1 19.4 149 151-300 29-207 (452)
264 3v9f_A Two-component system se 97.2 0.18 6.1E-06 49.6 33.4 159 143-307 407-570 (781)
265 2xe4_A Oligopeptidase B; hydro 97.1 0.086 3E-06 51.6 22.0 155 146-302 224-395 (751)
266 3v9f_A Two-component system se 97.1 0.25 8.4E-06 48.6 31.7 278 20-327 211-503 (781)
267 3tc9_A Hypothetical hydrolase; 97.0 0.18 6.1E-06 45.7 22.7 113 143-261 179-301 (430)
268 2xbg_A YCF48-like protein; pho 96.9 0.072 2.5E-06 46.3 17.7 154 142-302 162-319 (327)
269 3amr_A 3-phytase; beta-propell 96.9 0.2 6.7E-06 43.8 24.2 195 153-357 39-262 (355)
270 1fwx_A Nitrous oxide reductase 96.4 0.0025 8.5E-08 59.7 4.8 105 144-250 278-407 (595)
271 3tc9_A Hypothetical hydrolase; 96.4 0.31 1E-05 44.2 18.7 152 143-303 137-299 (430)
272 2p9w_A MAL S 1 allergenic prot 96.4 0.38 1.3E-05 41.6 17.7 116 145-261 65-215 (334)
273 2ad6_A Methanol dehydrogenase 96.4 0.67 2.3E-05 43.7 26.0 72 28-99 61-136 (571)
274 4hw6_A Hypothetical protein, I 96.3 0.57 2E-05 42.4 23.5 114 143-260 182-303 (433)
275 2p4o_A Hypothetical protein; p 96.3 0.42 1.4E-05 40.8 27.6 177 144-327 73-263 (306)
276 4hw6_A Hypothetical protein, I 96.3 0.59 2E-05 42.3 22.3 153 143-303 139-302 (433)
277 3pbp_A Nucleoporin NUP82; beta 96.2 0.093 3.2E-06 46.9 13.4 113 144-257 67-208 (452)
278 1ijq_A LDL receptor, low-densi 95.6 0.94 3.2E-05 38.9 30.7 196 143-356 30-236 (316)
279 2vpj_A Kelch-like protein 12; 95.6 0.88 3E-05 38.5 19.4 153 153-314 62-240 (301)
280 3ei3_A DNA damage-binding prot 95.6 2.4 8.4E-05 43.5 23.0 143 154-303 844-997 (1158)
281 2xn4_A Kelch-like protein 2; s 95.4 1.1 3.8E-05 37.9 19.5 154 153-313 61-237 (302)
282 3ii7_A Kelch-like protein 7; p 95.3 1.2 4E-05 37.9 19.0 155 153-314 55-234 (306)
283 1w6s_A Methanol dehydrogenase 95.2 1.2 4E-05 42.3 17.5 144 157-304 124-341 (599)
284 1n7d_A LDL receptor, low-densi 95.1 0.2 6.9E-06 48.5 12.1 196 143-356 406-612 (699)
285 1tl2_A L10, protein (tachylect 94.9 0.1 3.5E-06 42.3 7.7 106 143-255 41-157 (236)
286 3p5b_L Low density lipoprotein 94.8 2.1 7.2E-05 38.2 31.6 176 143-327 159-340 (400)
287 2p9w_A MAL S 1 allergenic prot 94.8 1.8 6.3E-05 37.3 20.4 156 146-304 16-214 (334)
288 3p5b_L Low density lipoprotein 94.3 2.7 9.2E-05 37.5 29.7 196 142-355 111-317 (400)
289 3amr_A 3-phytase; beta-propell 94.2 2.6 8.8E-05 36.8 21.9 113 146-260 131-262 (355)
290 1zgk_A Kelch-like ECH-associat 94.2 2.3 7.8E-05 36.1 17.9 153 153-313 70-248 (308)
291 3ii7_A Kelch-like protein 7; p 94.2 2.3 7.7E-05 36.0 23.3 156 153-315 101-282 (306)
292 3m0c_C LDL receptor, low-densi 94.2 4.7 0.00016 39.6 27.3 156 142-305 423-589 (791)
293 3sre_A PON1, serum paraoxonase 94.1 2.8 9.5E-05 36.7 19.2 158 189-357 53-251 (355)
294 1flg_A Protein (quinoprotein e 93.9 0.36 1.2E-05 45.6 10.6 54 205-263 465-518 (582)
295 2vpj_A Kelch-like protein 12; 93.8 2.7 9.2E-05 35.4 20.8 145 164-313 31-192 (301)
296 3das_A Putative oxidoreductase 93.6 2.2 7.4E-05 37.3 14.3 108 142-249 31-158 (347)
297 1ijq_A LDL receptor, low-densi 93.6 3.1 0.00011 35.6 24.8 176 163-357 9-194 (316)
298 2xn4_A Kelch-like protein 2; s 93.6 2.9 0.0001 35.2 18.2 152 155-313 17-190 (302)
299 1tl2_A L10, protein (tachylect 93.5 0.8 2.7E-05 37.1 10.3 102 187-299 42-157 (236)
300 3v65_B Low-density lipoprotein 93.3 4.1 0.00014 36.0 27.4 192 143-355 116-315 (386)
301 2uvk_A YJHT; unknown function, 93.2 3 0.0001 36.2 14.9 41 253-295 286-326 (357)
302 3a9g_A Putative uncharacterize 93.2 1.4 4.8E-05 38.6 12.6 105 143-249 29-153 (354)
303 3v65_B Low-density lipoprotein 93.0 4.5 0.00016 35.7 27.8 149 145-302 161-315 (386)
304 2ism_A Putative oxidoreductase 93.0 1.8 6.3E-05 37.8 13.1 104 143-249 31-153 (352)
305 1n7d_A LDL receptor, low-densi 93.0 0.53 1.8E-05 45.6 10.3 152 145-303 455-612 (699)
306 3sov_A LRP-6, low-density lipo 92.6 4.5 0.00015 34.7 23.9 193 144-356 36-236 (318)
307 1zgk_A Kelch-like ECH-associat 92.6 4.3 0.00015 34.4 22.8 152 153-311 121-293 (308)
308 2g8s_A Glucose/sorbosone dehyd 92.2 1.3 4.5E-05 38.7 11.1 106 142-249 17-148 (353)
309 1cru_A Protein (soluble quinop 92.1 2.4 8.1E-05 38.6 12.9 108 142-249 26-162 (454)
310 3v64_C Agrin; beta propeller, 91.4 6.6 0.00023 34.1 29.5 150 144-302 117-272 (349)
311 4asc_A Kelch repeat and BTB do 91.2 6.2 0.00021 33.4 18.8 155 152-313 44-229 (315)
312 3sre_A PON1, serum paraoxonase 90.9 7.7 0.00026 33.9 20.2 153 145-304 52-251 (355)
313 3kya_A Putative phosphatase; s 90.7 10 0.00034 34.8 18.9 155 144-303 140-339 (496)
314 2woz_A Kelch repeat and BTB do 90.5 7.4 0.00025 33.0 19.7 157 151-314 54-240 (318)
315 2uvk_A YJHT; unknown function, 90.4 8.1 0.00028 33.4 14.5 24 153-176 65-98 (357)
316 3qqz_A Putative uncharacterize 90.2 7 0.00024 32.3 22.0 208 14-258 21-250 (255)
317 3v64_C Agrin; beta propeller, 90.1 8.8 0.0003 33.3 29.4 173 143-326 73-253 (349)
318 3m0c_C LDL receptor, low-densi 89.6 16 0.00056 35.7 30.3 153 143-302 471-629 (791)
319 2xzh_A Clathrin heavy chain 1; 89.3 10 0.00034 32.8 17.7 126 147-284 71-207 (365)
320 2woz_A Kelch repeat and BTB do 87.8 12 0.0004 31.7 13.4 136 153-295 109-263 (318)
321 2ism_A Putative oxidoreductase 87.3 6.7 0.00023 34.1 11.5 71 187-260 32-113 (352)
322 3a9g_A Putative uncharacterize 87.2 4.7 0.00016 35.2 10.4 72 187-261 30-114 (354)
323 2wg3_C Hedgehog-interacting pr 86.7 14 0.00046 33.7 13.5 108 142-251 13-159 (463)
324 3das_A Putative oxidoreductase 85.5 18 0.0006 31.5 13.0 75 186-261 32-116 (347)
325 3sov_A LRP-6, low-density lipo 85.2 17 0.00057 31.0 28.9 151 144-303 80-236 (318)
326 1bpo_A Protein (clathrin); cla 84.7 22 0.00077 32.0 15.8 127 147-285 70-207 (494)
327 2be1_A Serine/threonine-protei 84.5 3.4 0.00012 35.9 8.0 107 155-263 11-132 (339)
328 1bpo_A Protein (clathrin); cla 84.5 23 0.00078 32.0 24.0 117 145-263 153-291 (494)
329 2g8s_A Glucose/sorbosone dehyd 83.5 19 0.00067 31.1 12.7 74 187-261 19-107 (353)
330 4asc_A Kelch repeat and BTB do 82.6 21 0.00071 30.1 19.1 142 164-313 13-182 (315)
331 3s94_A LRP-6, low-density lipo 81.5 36 0.0012 32.1 22.7 154 143-304 40-201 (619)
332 2xzh_A Clathrin heavy chain 1; 80.7 27 0.00094 30.2 24.9 98 164-263 180-292 (365)
333 3s94_A LRP-6, low-density lipo 78.1 47 0.0016 31.4 21.0 179 163-358 17-202 (619)
334 4a0p_A LRP6, LRP-6, low-densit 76.5 53 0.0018 31.1 24.5 152 144-305 38-197 (628)
335 4gq2_M Nucleoporin NUP120; bet 75.7 5.2 0.00018 40.2 7.0 38 144-181 237-274 (950)
336 3kya_A Putative phosphatase; s 75.2 50 0.0017 30.2 25.3 114 144-261 187-341 (496)
337 3ott_A Two-component system se 74.8 63 0.0021 31.2 20.1 154 144-303 374-543 (758)
338 3sbq_A Nitrous-oxide reductase 74.0 24 0.00083 32.9 10.1 69 145-215 325-408 (638)
339 1xi4_A Clathrin heavy chain; a 73.8 77 0.0026 33.4 14.6 124 149-284 72-206 (1630)
340 3ei3_A DNA damage-binding prot 73.7 86 0.0029 32.2 32.4 73 142-214 553-635 (1158)
341 1xi4_A Clathrin heavy chain; a 68.0 1.3E+02 0.0044 31.9 16.9 117 145-263 153-291 (1630)
342 4fhn_B Nucleoporin NUP120; pro 66.2 5.9 0.0002 40.7 5.0 38 144-181 239-276 (1139)
343 4a0p_A LRP6, LRP-6, low-densit 65.9 91 0.0031 29.5 23.6 177 162-357 13-196 (628)
344 2zwa_A Leucine carboxyl methyl 65.9 96 0.0033 29.7 17.7 155 153-309 451-639 (695)
345 1cru_A Protein (soluble quinop 65.2 79 0.0027 28.5 17.3 62 187-249 28-98 (454)
346 3f7f_A Nucleoporin NUP120; nuc 63.3 13 0.00045 35.7 6.4 37 144-182 223-259 (729)
347 2be1_A Serine/threonine-protei 57.3 21 0.00071 30.9 6.2 61 161-221 64-136 (339)
348 2zwa_A Leucine carboxyl methyl 53.6 1.6E+02 0.0053 28.2 20.9 151 152-307 396-579 (695)
349 3qhy_B Beta-lactamase inhibito 48.7 1.1E+02 0.0039 25.2 19.3 125 163-302 80-204 (282)
350 3ott_A Two-component system se 48.3 1.9E+02 0.0066 27.7 21.8 169 144-326 64-239 (758)
351 3f7f_A Nucleoporin NUP120; nuc 48.3 18 0.00063 34.7 4.7 31 20-50 222-252 (729)
352 3zwu_A Alkaline phosphatase PH 48.1 70 0.0024 30.0 8.5 57 145-201 478-547 (592)
353 4gq2_M Nucleoporin NUP120; bet 46.9 69 0.0024 32.1 8.8 31 232-262 237-267 (950)
354 3mez_B Mannose-specific lectin 42.9 82 0.0028 21.9 10.9 24 190-214 60-83 (113)
355 2wg3_C Hedgehog-interacting pr 41.8 2E+02 0.0067 26.0 14.1 55 187-241 15-79 (463)
356 3qhy_B Beta-lactamase inhibito 38.8 1.6E+02 0.0056 24.2 21.1 219 21-303 25-244 (282)
357 4a9v_A PHOX; hydrolase, beta-p 37.8 1.8E+02 0.0062 27.2 9.3 59 143-201 476-547 (592)
358 4a9v_A PHOX; hydrolase, beta-p 30.9 2.1E+02 0.0073 26.7 8.6 58 187-248 477-548 (592)
359 3b7f_A Glycosyl hydrolase, BNR 29.3 2.7E+02 0.0094 23.9 14.1 68 187-256 116-203 (394)
360 2z5e_A Proteasome assembling c 28.8 38 0.0013 24.3 2.7 42 3-44 4-45 (122)
361 3zwu_A Alkaline phosphatase PH 24.8 2.2E+02 0.0074 26.7 7.7 58 188-248 478-548 (592)
362 1q47_A Semaphorin 3A; beta pro 21.7 2E+02 0.0069 26.2 6.7 58 199-256 424-487 (495)
363 3al9_A Plexin-A2; beta-propell 21.6 1.3E+02 0.0043 27.9 5.4 69 188-256 402-476 (539)
364 3sbq_A Nitrous-oxide reductase 21.1 2.7E+02 0.0092 26.1 7.3 72 189-261 326-408 (638)
365 3ol2_B Plexin-B1; beta-propell 20.3 1.8E+02 0.0062 26.8 6.1 57 199-257 403-462 (528)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=327.83 Aligned_cols=288 Identities=22% Similarity=0.306 Sum_probs=237.7
Q ss_pred cceeeecccCccceeeeEec------CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--e
Q 044557 9 HHCLTTLKGHNSYVSSLALA------GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--K 80 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~------~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~ 80 (362)
..+++.+++|.+.|++|+|. +++|+|||.|++||+||+........ ..+..|...|.++.+.++ .
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~-------~~l~gh~~~v~~~~~~~~~~~ 94 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ-------WSLEGHQLGVVSVDISHTLPI 94 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE-------EEECCCSSCEEEEEECSSSSE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee-------eeeccCCCCEEEEEECCCCCE
Confidence 34667789999999999994 45899999999999999764321111 112345677888888764 5
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+++++.|++|++||+..+.. + ..+..|...+.+++|+|++++|++|
T Consensus 95 l~s~s~D~~i~lWd~~~~~~-------~---------------------------~~~~~~~~~~~~~~~spdg~~l~~g 140 (321)
T 3ow8_A 95 AASSSLDAHIRLWDLENGKQ-------I---------------------------KSIDAGPVDAWTLAFSPDSQYLATG 140 (321)
T ss_dssp EEEEETTSEEEEEETTTTEE-------E---------------------------EEEECCTTCCCCEEECTTSSEEEEE
T ss_pred EEEEeCCCcEEEEECCCCCE-------E---------------------------EEEeCCCccEEEEEECCCCCEEEEE
Confidence 89999999999999875421 0 1122456678899999999999999
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
+.|+.|++|++++++....+. .|...|.+++|+|+++ +++++.||.|++||+.++. ....+..|..+|.+++|+
T Consensus 141 ~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~s 215 (321)
T 3ow8_A 141 THVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK----LLHTLEGHAMPIRSLTFS 215 (321)
T ss_dssp CTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEEEECCCSSCCCEEEEC
T ss_pred cCCCcEEEEEcCCCceeEEec-CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc----EEEEEcccCCceeEEEEc
Confidence 999999999999988777665 6788999999999997 8899999999999998764 344567899999999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
|++++|++|+.|++|++||++... ....+.+|...|.+++|+++ ++++++.|++|++|+.. ...++.++.+|
T Consensus 216 pd~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~h 289 (321)
T 3ow8_A 216 PDSQLLVTASDDGYIKIYDVQHAN----LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG--TRTCVHTFFDH 289 (321)
T ss_dssp TTSCEEEEECTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--TTEEEEEECCC
T ss_pred CCCCEEEEEcCCCeEEEEECCCcc----eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC--CCEEEEEEcCC
Confidence 999999999999999999997643 34567899999999999865 89999999999999964 45778899999
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
...|++++|+|++ .+|+|++.|++|++||++
T Consensus 290 ~~~v~~v~~s~~g---------~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 290 QDQVWGVKYNGNG---------SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSCEEEEEECTTS---------SEEEEEETTCCEEEEECC
T ss_pred CCcEEEEEECCCC---------CEEEEEeCCCeEEEEeCC
Confidence 9999999998654 468999999999999985
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-44 Score=330.79 Aligned_cols=284 Identities=25% Similarity=0.409 Sum_probs=238.0
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~ 86 (362)
...+|.||.++|+++.|+ +.+|+||+.||+|++||+.+... . ..+..|...|.++.+.++ .|++++.
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--~-------~~l~~h~~~V~~v~~~~~~~~l~sgs~ 170 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--E-------RTLKGHTDSVQDISFDHSGKLLASCSA 170 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--C-------EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--E-------EEEeccCCcEEEEEEcCCCCEEEEEeC
Confidence 456789999999999995 67999999999999999876431 1 122346678888988754 5999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
|++|++||+..... + .++.+|...|.+++|+|++++|++|+.|++|
T Consensus 171 D~~i~iwd~~~~~~-------~---------------------------~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i 216 (410)
T 1vyh_C 171 DMTIKLWDFQGFEC-------I---------------------------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216 (410)
T ss_dssp TSCCCEEETTSSCE-------E---------------------------ECCCCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred CCeEEEEeCCCCce-------e---------------------------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 99999999865321 0 1123588899999999999999999999999
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC----
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD---- 241 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---- 241 (362)
++||++++.++..+. +|...|.+++++|++. +++++.|++|++||+.++.. ...+..|...|.+++|+|+
T Consensus 217 ~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 217 KMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC----KAELREHRHVVECISWAPESSYS 291 (410)
T ss_dssp EEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEECCSCGGG
T ss_pred EEEECCCCcEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce----eeEecCCCceEEEEEEcCccccc
Confidence 999999999888875 7999999999999997 78999999999999987643 3345679999999999996
Q ss_pred ----------------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 242 ----------------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 242 ----------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
|.+|++|+.|++|++||+.++. .+..+.+|...|.+++|+++ ++++++.|++|++|+.
T Consensus 292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc----eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 6789999999999999997643 34567899999999999754 8999999999999996
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
. ...++..+.+|...|++++|+|++ .+|+|||.||+|++|++.
T Consensus 368 ~--~~~~~~~~~~h~~~v~~l~~~~~~---------~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 368 K--NKRCMKTLNAHEHFVTSLDFHKTA---------PYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp T--TSCCCEEEECCSSCEEEEEECSSS---------SCEEEEETTSEEEEEC--
T ss_pred C--CCceEEEEcCCCCcEEEEEEcCCC---------CEEEEEeCCCcEEEEeCC
Confidence 3 456788999999999999998764 469999999999999863
No 3
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-43 Score=317.39 Aligned_cols=309 Identities=18% Similarity=0.288 Sum_probs=228.5
Q ss_pred ccceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 8 DHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
..+++++|++|.++|+++.+++++|+||+.|++|++||+..........+.. ..|...|.++.+.++ .|++++
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDE-----TAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECT-----TCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEec-----CCccCCEEEEEECCCCCEEEEEe
Confidence 4678899999999999999998899999999999999986532111111100 115668899988764 599999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.|++|++|++......... ......+.+|.+.|.+++|+|++++|++|+.|++
T Consensus 78 ~D~~v~iw~~~~~~~~~~~---------------------------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~ 130 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFE---------------------------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130 (330)
T ss_dssp TTSCEEEEEC-------CC---------------------------CEEEEEEC----CEEEEEECTTSCEEEEEETTSC
T ss_pred CCCcEEEEEcccCcCcccc---------------------------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCE
Confidence 9999999998532110000 0011234578999999999999999999999999
Q ss_pred EEEEECCC----ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 166 IKIWRTSD----FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 166 i~iwd~~~----~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
|++||++. .+++..+ .+|...|.+++|+|++. +++++.|++|++||...+. ......+.+|...|.+++|+|
T Consensus 131 v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~ 207 (330)
T 2hes_X 131 VWIWETDESGEEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDK 207 (330)
T ss_dssp EEEEECCTTCCCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECC
T ss_pred EEEEeccCCCCCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecC
Confidence 99999943 2455555 47999999999999987 8899999999999976542 133456678999999999999
Q ss_pred C--CCEEEEEcCCCcEEEEeccCCCC----cEEEEEeecC-ccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 241 D--GSVLYSGACDRSIIVWEKEEDDG----NILVVGALRG-HTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 241 ~--~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~-h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
+ +.+|++|+.|++|++||+..... .......+.+ |...|.+++|+++ ++++++.|++|++|+..........
T Consensus 208 ~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 208 TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFA 287 (330)
T ss_dssp SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEe
Confidence 8 77999999999999999864321 1123344554 8999999999854 8999999999999996443333333
Q ss_pred -EecCCCC-cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 313 -VLEGHRG-PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 313 -~l~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+.+|.. .|.+++|+|.. ++.+|+|||.||+|+||++..
T Consensus 288 ~~~~~h~~~~v~~v~~~~~~-------~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 288 KRALCHGVYEINVVKWLELN-------GKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EESCTTTTSCEEEEEEC------------CCEEEEETTSEEEEEEC--
T ss_pred ccccccccceEEEEEEecCC-------CceEEEEecCCCcEEEEEecc
Confidence 3468987 99999998731 235799999999999999864
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.6e-43 Score=316.12 Aligned_cols=290 Identities=20% Similarity=0.344 Sum_probs=233.9
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
..++.++|+||.+.|+++.|+ +++|+||+.||+|++||+.+... .. .+..+...+.++.+.++ .+++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~--~~-------~~~~~~~~v~~~~~s~~~~~l~s 114 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK--VH-------AIPLRSSWVMTCAYAPSGNYVAC 114 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--EE-------EEECSSSCEEEEEECTTSSEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc--ce-------EeecCCccEEEEEECCCCCEEEE
Confidence 356778899999999999994 78999999999999999865331 11 12234567788887654 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|+.|++|++....... .....+.+|.+.|.++.|++++. +++++.|
T Consensus 115 ~~~d~~v~iw~~~~~~~~~------------------------------~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d 163 (340)
T 1got_B 115 GGLDNICSIYNLKTREGNV------------------------------RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD 163 (340)
T ss_dssp EETTCEEEEEETTTCSBSC------------------------------EEEEEEECCSSCEEEEEEEETTE-EEEEETT
T ss_pred EeCCCeEEEEECccCCCcc------------------------------eeEEEecCCCccEEEEEECCCCc-EEEEECC
Confidence 9999999999986533110 00112346889999999998875 8899999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
++|++||+++++++..+. +|...|.+++|+|++. +++|+.||+|++||+.++.. ...+..|..+|++++|+|++
T Consensus 164 ~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~----~~~~~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 164 TTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC----RQTFTGHESDINAICFFPNG 238 (340)
T ss_dssp SCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE----EEEECCCSSCEEEEEECTTS
T ss_pred CcEEEEECCCCcEEEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee----EEEEcCCcCCEEEEEEcCCC
Confidence 999999999999888775 7999999999999987 78999999999999987643 33456799999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
.+|++|+.|++|++||++.... ........+...|.+++|+++ ++++|+.|+.|++|+... ...+..+.+|.+.
T Consensus 239 ~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~--~~~~~~~~~h~~~ 314 (340)
T 1got_B 239 NAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--ADRAGVLAGHDNR 314 (340)
T ss_dssp SEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSC
T ss_pred CEEEEEcCCCcEEEEECCCCcE--EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc--CcEeeEeecCCCc
Confidence 9999999999999999976431 122222334457899999865 899999999999999643 4567889999999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|.+++|+|++ .+|+|||.|++|+|||
T Consensus 315 v~~~~~s~dg---------~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 315 VSCLGVTDDG---------MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTS---------SCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCC---------CEEEEEcCCccEEecC
Confidence 9999998764 4699999999999997
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.8e-44 Score=319.04 Aligned_cols=295 Identities=17% Similarity=0.160 Sum_probs=225.6
Q ss_pred cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCc--ccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCc
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSS--ELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHK 89 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~ 89 (362)
...|...|.+++|+ |++|++++ |+++|+||...... ...............+...|.++.+.++ .+++++.||+
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~ 104 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGA 104 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSE
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCE
Confidence 34678889999994 78888877 88999998432100 0000000001112234567889988765 5999999999
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW 169 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iw 169 (362)
|++||++.++.... ......+|.+.|.+++|+|++++|++|+.|++|++|
T Consensus 105 v~lWd~~~~~~~~~------------------------------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 105 VELWELDENETLIV------------------------------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154 (344)
T ss_dssp EEEEEECTTSSCEE------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCceeE------------------------------eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 99999976542110 011234699999999999999999999999999999
Q ss_pred ECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-CCEEE
Q 044557 170 RTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD-GSVLY 246 (362)
Q Consensus 170 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~ 246 (362)
|+++++++..+. +|...|.+++|+|++. +++++.||+|++||+.+++....+ ....|...+.+++|+|+ +.+|+
T Consensus 155 d~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 155 DLAQQVVLSSYR-AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--GCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp ETTTTEEEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC--C----CCCEEEEEECSSCTTEEE
T ss_pred ECCCCcEEEEEc-CcCCceEEEEecCCCCCceeeeccccccccccccccceeeee--ecceeeccceeeeecCCCCcceE
Confidence 999999988875 8999999999999874 789999999999999887654333 22345667899999995 56889
Q ss_pred EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEE
Q 044557 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKC 323 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~ 323 (362)
+|+.|++|++||+++.+. +..+.+|...|.+++|+++ +|+|||.|++|++||... .+ +..+.+|.+.|++
T Consensus 232 sg~~dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~--~~-~~~~~~H~~~V~~ 304 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSC----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL--SE-LFRSQAHRDFVRD 304 (344)
T ss_dssp EEETTSEEEEEESCC--C----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--CE-EEEECCCSSCEEE
T ss_pred EeccCCcEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--Cc-EEEEcCCCCCEEE
Confidence 999999999999986542 3457899999999999853 799999999999999643 33 3467899999999
Q ss_pred EEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 324 LAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++|+|++. .+|+|||.|++|++|++..
T Consensus 305 v~~sp~~~--------~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 305 ATWSPLNH--------SLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEECSSST--------TEEEEEETTSCEEEEECCC
T ss_pred EEEeCCCC--------eEEEEEcCCCeEEEEECCC
Confidence 99988653 4788999999999999854
No 6
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-43 Score=316.87 Aligned_cols=303 Identities=21% Similarity=0.329 Sum_probs=234.5
Q ss_pred ccceeeecccCcc-ceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 8 DHHCLTTLKGHNS-YVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~-~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
..+++++|++|.+ .|++++|+ +++||||+.|++||+||++........ .....|...|.++.+.++ .|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~------~~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS------VLSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE------EECSSCSSCEEEEEECTTSSEEE
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee------eeccccCCcEEEEEECCCCCEEE
Confidence 4568899999998 99999994 789999999999999997653211100 011235678899998764 599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|+++++|++...... ....+.+|...|.+++|+|++++|++|+.
T Consensus 78 s~s~D~~v~iw~~~~~~~~--------------------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~ 125 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDDFE--------------------------------CVTTLEGHENEVKSVAWAPSGNLLATCSR 125 (345)
T ss_dssp EEETTSCEEEEEECCC-EE--------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCCcEEEEEccCCCeE--------------------------------EEEEccCCCCCceEEEEeCCCCEEEEEEC
Confidence 9999999999998643210 01223468899999999999999999999
Q ss_pred CCcEEEEECCCce---EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 163 DRTIKIWRTSDFK---CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 163 d~~i~iwd~~~~~---~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
|++|++||+++.. ++..+ ..|...|.+++|+|++. +++++.|++|++||...+.. .....+.+|...|.+++|
T Consensus 126 D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~ 202 (345)
T 3fm0_A 126 DKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW--VCCATLEGHESTVWSLAF 202 (345)
T ss_dssp TSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEE
T ss_pred CCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE--EEEEEecCCCCceEEEEE
Confidence 9999999997653 34444 47999999999999987 88999999999999876431 233456789999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCC-----------cEEEEEeecC-ccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDG-----------NILVVGALRG-HTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~-----------~~~~~~~~~~-h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
+|+|++|++|+.|++|++|+...... ....+..+.+ |...|.+++|+++ .+++++.|+.|++|+..
T Consensus 203 sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence 99999999999999999999643211 1122334444 8889999999764 89999999999999853
Q ss_pred CCc------ee-eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 305 DRN------YT-CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 305 ~~~------~~-~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
... .. ....+.+|...|++++|+|++. .+|+|||.||+|++|++..+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~--------~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP--------GLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp TTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST--------TEEEEEETTSCEEEEEECC-
T ss_pred CCCCcceeeEEEEeeecccccCcEeEeEEeCCCc--------eEEEEcCCCCcEEEEEecCC
Confidence 221 11 1234569999999999987642 37999999999999999654
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7e-43 Score=308.46 Aligned_cols=289 Identities=21% Similarity=0.346 Sum_probs=232.1
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
.+..++|++|.+.|.+++|+ +++|+||+.||+|++||+++... . ..+..+...+.++.+.++ .|+++
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~--~-------~~~~~~~~~v~~~~~~~~~~~l~s~ 73 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE--V-------RSIQVTETPVRAGKFIARKNWIIVG 73 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--E-------EEEECCSSCEEEEEEEGGGTEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce--e-------EEeeccCCcEEEEEEeCCCCEEEEE
Confidence 45678899999999999995 78999999999999999875321 1 122335667888877654 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|++|++||++.++. ...+.+|.+.|.+++|+|++++|++|+.|+
T Consensus 74 s~d~~i~vwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 119 (304)
T 2ynn_A 74 SDDFRIRVFNYNTGEK----------------------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119 (304)
T ss_dssp ETTSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCCCEEEEEECCCCcE----------------------------------EEEEeCCCCcEEEEEEcCCCCEEEEECCCC
Confidence 9999999999875431 122346889999999999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec--
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-- 240 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-- 240 (362)
+|++||++++..+.....+|...|.+++|+| ++. +++|+.|++|++||+........+ ...|...|..+.|+|
T Consensus 120 ~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~ 196 (304)
T 2ynn_A 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLP 196 (304)
T ss_dssp CEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---ECCCTTCEEEEEECCST
T ss_pred eEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---ccCCcCcEEEEEEEEcC
Confidence 9999999887444444458999999999998 454 889999999999999766543322 234667899999987
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
++.+|++|+.|++|++||+++.. .+..+.+|...|.+++|+++ +++||+.|++|++|+.. .+++++.+.+|.
T Consensus 197 ~~~~l~s~s~D~~i~iWd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~--~~~~~~~~~~~~ 270 (304)
T 2ynn_A 197 DKPYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS--TYKVEKTLNVGL 270 (304)
T ss_dssp TCCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT--TCCEEEEECCSS
T ss_pred CCCEEEEEcCCCeEEEEeCCCCc----cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC--CCceeeeccCCC
Confidence 77899999999999999997643 45678899999999999875 79999999999999954 466788999999
Q ss_pred CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 319 GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..+++++++|++. ..+|++|+.| .+.+|++.
T Consensus 271 ~~~~~~~~~~~~~-------~~~~asg~~~-g~~~~~~~ 301 (304)
T 2ynn_A 271 ERSWCIATHPTGR-------KNYIASGFDN-GFTVLSLG 301 (304)
T ss_dssp SSEEEEEECTTCG-------GGCEEEEETT-EEEEEECC
T ss_pred ccEEEEEECCCCC-------ceEEEEecCC-ceEEEEec
Confidence 9999999987543 2358888755 56678775
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3e-42 Score=310.92 Aligned_cols=294 Identities=23% Similarity=0.356 Sum_probs=233.7
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
...++.++|+||.+.|++++|+ +++|+|||.||+|++||..+... . ..+..+...+.++.+.++ .++
T Consensus 52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~--~-------~~~~~~~~~v~~~~~sp~g~~la 122 (354)
T 2pbi_B 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK--E-------HAVTMPCTWVMACAYAPSGCAIA 122 (354)
T ss_dssp CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--E-------EEEECSSSCCCEEEECTTSSEEE
T ss_pred cccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc--c-------eEEecCCCCEEEEEECCCCCEEE
Confidence 3446778999999999999994 78999999999999999765321 1 112234456777777654 599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|+.+++|++......... .....+..|...|.+++|+|+++.|++++.
T Consensus 123 sg~~d~~i~v~~~~~~~~~~~~----------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~ 174 (354)
T 2pbi_B 123 CGGLDNKCSVYPLTFDKNENMA----------------------------AKKKSVAMHTNYLSACSFTNSDMQILTASG 174 (354)
T ss_dssp EESTTSEEEEEECCCCTTCCSG----------------------------GGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred EeeCCCCEEEEEEecccccccc----------------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence 9999999999998643211000 011223468999999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
|++|++||+++++++..+. +|...|.+++++|+ +. +++|+.||+|++||+.++.. ...+..|..+|++++|+
T Consensus 175 D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~~~ 249 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC----VQAFETHESDVNSVRYY 249 (354)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE----EEEECCCSSCEEEEEEC
T ss_pred CCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE----EEEecCCCCCeEEEEEe
Confidence 9999999999999888775 79999999999874 44 88999999999999987653 33456799999999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
|++.+|++|+.|++|++||++.... ........+...+.+++|+++ ++++|+.|++|++|+... ..++..+.+|
T Consensus 250 p~~~~l~s~s~D~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~--~~~~~~l~~h 325 (354)
T 2pbi_B 250 PSGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK--GSRVSILFGH 325 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CSEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC--CceEEEEECC
Confidence 9999999999999999999976421 111122233446788898754 899999999999999643 4567889999
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
.+.|.+++|+|++ .+|+|||.|++|+||+
T Consensus 326 ~~~v~~l~~spdg---------~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ENRVSTLRVSPDG---------TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEEECTTS---------SCEEEEETTSEEEEEC
T ss_pred CCcEEEEEECCCC---------CEEEEEcCCCCEEecC
Confidence 9999999998765 4699999999999996
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-42 Score=311.93 Aligned_cols=292 Identities=15% Similarity=0.164 Sum_probs=222.7
Q ss_pred cccCccceeeeEec--CcEEEEecC------CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEe
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSS------DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAH 85 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~------Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~ 85 (362)
..+|.+.|.+|+|+ |++|||||. |++|++|+......... + ......+...|.++.+.++ .+++++
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~--~---~~~~~~~~~~V~~~~~s~d~~~l~~s 112 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES--L---CTAGVQTEAGVTDVAWVSEKGILVAS 112 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG--G---CSEEEECSSCEEEEEEETTTEEEEEE
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee--E---ecccCCCCCCEEEEEEcCCCCEEEEE
Confidence 45799999999994 889999997 78899998654321110 0 0111235667889988765 588999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.||+|++||+..++.... ......+|.+.|.+++|+|++++|++|+.|+.
T Consensus 113 ~dg~v~lWd~~~~~~~~~------------------------------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~ 162 (357)
T 4g56_B 113 DSGAVELWEILEKESLLV------------------------------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162 (357)
T ss_dssp TTSCEEEC--------CC------------------------------CCEEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred CCCEEEEeeccccceeEE------------------------------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 999999999875432100 00112368899999999999999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG- 242 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~- 242 (362)
|++||+++++++..+. .|...|.+++|+|++. +++++.||+|++||+.++...... ....|...+.+++|+|++
T Consensus 163 v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 163 VKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI--DFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp EEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC--CCTTCCSCEEEEEECTTST
T ss_pred EEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee--eeccccccccchhhhhccc
Confidence 9999999999888775 7999999999998874 889999999999999877543322 234567789999999974
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCC
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG 319 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~ 319 (362)
.+|++|+.|+.|++||+++.+. +..+.+|...|.+++|+++ +|++++.|++|++||... .+++.. .+|.+
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~--~~~~~~-~~H~~ 312 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDS----AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF--SEVFRD-LSHRD 312 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGG----CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS--CEEEEE-CCCSS
T ss_pred ceEEEeecccceeEEECCCCcE----eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC--CcEeEE-CCCCC
Confidence 6889999999999999986543 3456789999999999753 799999999999999643 444544 48999
Q ss_pred cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 320 PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.|++++|+|.. +.+|+|||.||+|++|++..+
T Consensus 313 ~V~~vafsP~d--------~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 313 FVTGVAWSPLD--------HSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CEEEEEECSSS--------TTEEEEEETTSCEEEEECC--
T ss_pred CEEEEEEeCCC--------CCEEEEEcCCCeEEEEECCCC
Confidence 99999998732 247999999999999999643
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-41 Score=305.33 Aligned_cols=297 Identities=19% Similarity=0.267 Sum_probs=225.3
Q ss_pred ccceeeecccCccceeeeEe--------cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc
Q 044557 8 DHHCLTTLKGHNSYVSSLAL--------AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD 79 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~--------~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (362)
..++..+|+||.+.|+++.| ++++|+||+.|++|++||+....... ........+..|...|.++.+.++
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--~~~~~~~~l~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--YFGIPHKALTGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS--BSEEEEEEECCCSSCEEEEEECSS
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc--ccccccchhccCCCceEEEEECCC
Confidence 44678899999999999988 46799999999999999986532110 001111233456778899988764
Q ss_pred --eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 80 --KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 80 --~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
.+++++.|++|++||++.+.. ...+.+|...|.+++|+|++++|
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~----------------------------------~~~~~~h~~~v~~v~~sp~~~~l 133 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTT----------------------------------YKRFVGHQSEVYSVAFSPDNRQI 133 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCE----------------------------------EEEEECCCSCEEEEEECSSTTEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcE----------------------------------EEEEcCCCCcEEEEEECCCCCEE
Confidence 589999999999999875431 11234688999999999999999
Q ss_pred EEEECCCcEEEEECCCceEEEee-eccCcccEEEEEEcCCC-----------cEEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESI-TNAHDDAINAVALSDDG-----------DVYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~-~~~h~~~v~~v~~~~~~-----------~~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
++++.|++|++||+......... ...|...|.+++|+|++ .+++++.||.|++||... .....
T Consensus 134 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~ 208 (343)
T 2xzm_R 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYT 208 (343)
T ss_dssp EEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEE
T ss_pred EEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEE
Confidence 99999999999999854332211 12688899999999975 388999999999999432 23345
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCC
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~ 304 (362)
+..|..+|.+++|+|+|++|++|+.|+.|++||+......... + .+...|.+++|+++ .+++++.|+.|++|+..
T Consensus 209 ~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~---~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~ 284 (343)
T 2xzm_R 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE---F-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLM 284 (343)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE---E-ECSSCEEEEEECSSSCEEEEEESSCEEEEESS
T ss_pred EcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee---e-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeC
Confidence 5679999999999999999999999999999998543322221 1 23456999999876 45567778999999964
Q ss_pred CCceeeeeEec-----------CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 305 DRNYTCLAVLE-----------GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 305 ~~~~~~~~~l~-----------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
......+..+. +|...|.+++|+|++ .+|++|+.||+|++|++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---------~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG---------KKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS---------CCEEEEETTSEEEEEEEEE
T ss_pred CCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC---------CeEEEecCCceEEEEEEEc
Confidence 43222112332 799999999998765 3599999999999999864
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.9e-42 Score=315.19 Aligned_cols=299 Identities=19% Similarity=0.339 Sum_probs=230.7
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
.+..+.++|+||.+.|+++.|+ +++|+|||.|++|++||+.+... . ..+..|...+.++.+.++ .++
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~--~-------~~~~~h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK--T-------HAIKLHCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE--E-------EEEECCCTTCCCCEECTTSSEEE
T ss_pred ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--c-------eEEecCCCCEEEEEECCCCCEEE
Confidence 3567889999999999999995 78999999999999999865321 1 122345566777777654 599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s 161 (362)
+++.|+.+++|++.......... + ....+.+|.+.+.++.|.|++ ..|++|+
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~------~---------------------~~~~~~gh~~~v~~~~~~~~~~~~l~s~s 177 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNM------P---------------------VSRVLTGHKGYASSCQYVPDQETRLITGS 177 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSS------T---------------------TCCBCCCCSSCCCCCBCCSSSSSCEEEEC
T ss_pred EeeCCCcEEEEECCCCccccCCc------c---------------------ceeeccCCCcceEEEEEecCCCCEEEEEC
Confidence 99999999999986532110000 0 001123688889999999874 5799999
Q ss_pred CCCcEEEEECCCceEEEeee----ccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 162 WDRTIKIWRTSDFKCLESIT----NAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~----~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
.|++|++||+++++++..+. .+|...|.++++++ ++. +++|+.||+|++||+..... ....+.+|..+|++
T Consensus 178 ~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~---~~~~~~~h~~~v~~ 254 (380)
T 3iz6_a 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR---AVRTYHGHEGDINS 254 (380)
T ss_dssp TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC---CCEEECCCSSCCCE
T ss_pred CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc---ceEEECCcCCCeEE
Confidence 99999999999998776552 46889999999976 555 88999999999999874322 23345679999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-------ccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCC
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-------HTKSILCMAVVS--DLVCSGSADKTIRIWRGIDR 306 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~ 306 (362)
++|+|++.+|++|+.|++|++||++++.. +..+.. +...|.+++|++ .++++|+.|+.|++||...
T Consensus 255 v~~~p~~~~l~s~s~D~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~- 329 (380)
T 3iz6_a 255 VKFFPDGQRFGTGSDDGTCRLFDMRTGHQ----LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL- 329 (380)
T ss_dssp EEECTTSSEEEEECSSSCEEEEETTTTEE----EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT-
T ss_pred EEEecCCCeEEEEcCCCeEEEEECCCCcE----EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC-
Confidence 99999999999999999999999986432 222222 223478899875 4899999999999999643
Q ss_pred ceeeeeEe----cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 307 NYTCLAVL----EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 307 ~~~~~~~l----~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
...+..+ .+|.+.|.+++|+|++ .+|+|||.|++|++|++...
T Consensus 330 -~~~~~~~~~~~~~h~~~v~~l~~s~dg---------~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 330 -AEMVLNLGTLQNSHEGRISCLGLSSDG---------SALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp -CCEEEEECCSCSSCCCCCCEEEECSSS---------SEEEEECTTSCEEEEECCSS
T ss_pred -CceEEEEecccCCCCCceEEEEECCCC---------CEEEEeeCCCCEEEEecCCC
Confidence 3334444 6899999999998764 46999999999999999754
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3e-41 Score=325.77 Aligned_cols=333 Identities=20% Similarity=0.297 Sum_probs=234.7
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
+.++..+|.+|.+.|.+++|+ +++|+||+.|++|++||+.+... ...+.........|.+.|.++.+.++ .|++
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s 256 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE--eeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence 456788999999999999994 78999999999999999865431 11110000000135678999999765 5999
Q ss_pred EecCCcEEEEecCCCCCCcccc-------eeeeeccCCCchhhhhccccccceeeee----eeeEEeeecCceeEEEEec
Q 044557 84 AHQDHKIRVWKINNQEPDHQKY-------TRLATLPTLGDRAIKLLMPKNHVQIRRH----KTCTWVHHVDAVSALALTK 152 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~ 152 (362)
++.|++|++||+..+....... ....... ....+.....++...+++. ....+.+|...|.+++|+|
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp 334 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC
Confidence 9999999999997643211000 0000000 0000011111111222211 1233457999999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeecc-------------------------------------------------
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNA------------------------------------------------- 183 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------------------------------------------------- 183 (362)
++++|++++.|++|++||+.++++...+...
T Consensus 335 dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~ 414 (611)
T 1nr0_A 335 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 414 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCC
Confidence 9999999999999999998876543321111
Q ss_pred --------------------------------CcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccc
Q 044557 184 --------------------------------HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN 230 (362)
Q Consensus 184 --------------------------------h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~ 230 (362)
|...+.+++|+|+|+ +++|+.|++|++||+..+.. ..... ..|.
T Consensus 415 ~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~--~~~~~-~~h~ 491 (611)
T 1nr0_A 415 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV--SEVKT-IVHP 491 (611)
T ss_dssp EEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE--EEEEE-EECS
T ss_pred cEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce--eeeec-cCCC
Confidence 223467888999987 78899999999999865421 11122 5689
Q ss_pred cceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCce
Q 044557 231 SGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNY 308 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~ 308 (362)
..|++++|+|||++|++++.|++|++|++.+.. .......+.+|...|.+++|+++ +|+|+|.|++|++|+......
T Consensus 492 ~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~-~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNF-ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC-ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 999999999999999999999999999997522 11111123459999999999876 899999999999999754322
Q ss_pred eeeeEecCC-CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 309 TCLAVLEGH-RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 309 ~~~~~l~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..+..+.+| ...|.+++|+|++ . |+|||.|++|++|++.+
T Consensus 571 ~~~~~~~~h~~~~v~~v~fs~d~---------~-l~s~~~D~~i~lW~~~~ 611 (611)
T 1nr0_A 571 HPIIIKGAHAMSSVNSVIWLNET---------T-IVSAGQDSNIKFWNVPF 611 (611)
T ss_dssp CCEEETTSSTTSCEEEEEEEETT---------E-EEEEETTSCEEEEECCC
T ss_pred ccchhhccCcccCeeEEEEcCCC---------E-EEEecCCCCEEEEeccC
Confidence 223678899 8999999998763 4 89999999999999854
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-40 Score=294.89 Aligned_cols=292 Identities=23% Similarity=0.434 Sum_probs=233.8
Q ss_pred cceeccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--
Q 044557 4 LSVVDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-- 79 (362)
Q Consensus 4 ~~~~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (362)
+-.++.++..+|.||.+.|++++|+ +++|++|+.||+|++|++.... .. ..+..|...+.++.+.++
T Consensus 8 ~~~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--~~-------~~~~~h~~~v~~~~~~~~~~ 78 (312)
T 4ery_A 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FE-------KTISGHKLGISDVAWSSDSN 78 (312)
T ss_dssp -CCCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EE-------EEECCCSSCEEEEEECTTSS
T ss_pred cCCCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--cc-------hhhccCCCceEEEEEcCCCC
Confidence 3356677888999999999999995 7899999999999999976532 11 122335667888888754
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS 159 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 159 (362)
.|++++.|+.|++||++.... ...+..|...|.+++|+|++++|++
T Consensus 79 ~l~s~~~d~~i~vwd~~~~~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~s 124 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSSGKC----------------------------------LKTLKGHSNYVFCCNFNPQSNLIVS 124 (312)
T ss_dssp EEEEEETTSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECSSSSEEEE
T ss_pred EEEEECCCCEEEEEECCCCcE----------------------------------EEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 599999999999999875431 1123468889999999999999999
Q ss_pred EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 160 VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 160 ~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
|+.|+.|++||+++++++..+. .|..+|.+++|+|++. +++++.||.|++||+.++.....+ ...+..++..++|
T Consensus 125 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~ 200 (312)
T 4ery_A 125 GSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKF 200 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCSSCCCEEEEEE
T ss_pred EeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE---eccCCCceEEEEE
Confidence 9999999999999998887775 7889999999999987 889999999999999876533222 2346678999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEE--EEEe---CCeEEEeeCCCcEEEeeCCCCceeeeeE
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC--MAVV---SDLVCSGSADKTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~--~~~~---~~~~~s~s~D~~i~~W~~~~~~~~~~~~ 313 (362)
+|++++|++++.|+.|++||+.+.. .+..+.+|.....+ ..+. +.++++|+.|+.|++|+... ...+..
T Consensus 201 ~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~--~~~~~~ 274 (312)
T 4ery_A 201 SPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT--KEIVQK 274 (312)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTTE----EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT--CCEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCc----EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC--chhhhh
Confidence 9999999999999999999997643 34456677654332 2232 34899999999999999643 456889
Q ss_pred ecCCCCcEEEEEeeecCCccCCCCCceEEEecC--CCCcEEEEecc
Q 044557 314 LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS--LDCDIKVWQIS 357 (362)
Q Consensus 314 l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s--~D~~i~~W~~~ 357 (362)
+.+|.+.|.+++|+|++ .+|++++ .|++|++|+.+
T Consensus 275 ~~~h~~~v~~~~~~p~~---------~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 LQGHTDVVISTACHPTE---------NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCCSSCEEEEEECSSS---------SEEEEEECTTTCCEEEEECC
T ss_pred hhccCCcEEEEeecCcC---------CceEEEEccCCccEEEecCC
Confidence 99999999999998764 4577775 79999999975
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2e-40 Score=294.69 Aligned_cols=288 Identities=24% Similarity=0.389 Sum_probs=224.0
Q ss_pred cceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
..+..+|+||.+.|.+|+++ +++|+|||.|++|++||+...... +......+..|...+.++.+.++ .|++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----FGVPVRSFKGHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----EEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----ccccceEEeCCcccEEEEEECCCCCEEEE
Confidence 46778999999999999995 379999999999999997542211 11111233456778888888765 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|++|++||+..++. ...+.+|...|.+++|+|++++|++|+.|
T Consensus 83 ~s~D~~v~~wd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D 128 (319)
T 3frx_A 83 ASWDKTLRLWDVATGET----------------------------------YQRFVGHKSDVMSVDIDKKASMIISGSRD 128 (319)
T ss_dssp EETTSEEEEEETTTTEE----------------------------------EEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred EeCCCEEEEEECCCCCe----------------------------------eEEEccCCCcEEEEEEcCCCCEEEEEeCC
Confidence 99999999999875421 12235788999999999999999999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-------cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-------DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-------~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
++|++||++. +++..+. +|...|.+++++|.. .+++++.|+.|++||+.+.. ....+.+|..+|.++
T Consensus 129 ~~i~vwd~~~-~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~ 202 (319)
T 3frx_A 129 KTIKVWTIKG-QCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTL 202 (319)
T ss_dssp SCEEEEETTS-CEEEEEC-CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEE
T ss_pred CeEEEEECCC-CeEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEE
Confidence 9999999975 4555554 799999999998853 38899999999999997653 334456799999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEe
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l 314 (362)
+|+|+|++|++|+.|++|++||+...+ .+..+.. ...|.+++|+++ ++++++ +..+++|+... ...+..+
T Consensus 203 ~~sp~g~~l~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~--~~~~~~~ 274 (319)
T 3frx_A 203 TASPDGTLIASAGKDGEIMLWNLAAKK----AMYTLSA-QDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDP--QYLVDDL 274 (319)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTTE----EEEEEEC-CSCEEEEEECSSSSEEEEEE-TTEEEEEEETT--EEEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCc----EEEEecC-CCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCc--Ceeeecc
Confidence 999999999999999999999997643 2333443 457999999876 555555 55699998643 2333333
Q ss_pred --------cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 315 --------EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 315 --------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..|...|.+++|+|++ .+|++|+.|++|+|||+.
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~spdg---------~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 275 RPEFAGYSKAAEPHAVSLAWSADG---------QTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CCCCTTCCGGGCCCEEEEEECTTS---------SEEEEEETTSCEEEEEEE
T ss_pred CccccccccCcCcceeEEEECCCC---------CEEEEeecCceEEEEEEe
Confidence 2457789999998764 469999999999999985
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-40 Score=301.20 Aligned_cols=298 Identities=24% Similarity=0.428 Sum_probs=227.8
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccc-------ee----EEeecceeEEEEEcCc--ee
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNN-------NI----VAVGKGAVKSLVVLAD--KL 81 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~-------~~----~~~~~~~v~~i~~~~~--~l 81 (362)
+|.+.|.+++|+ |++||+|+ |+++++|++.+.... ..+.... .. ...+...+.++.+.++ .|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV--ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE--EEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE--EEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 699999999994 78999976 789999998764321 1111000 00 0011224778888764 59
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++++.|++|++||+..... ...+.+|...|.+++|+|++++|++++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKI----------------------------------VMILQGHEQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp EEEETTSCEEEEETTTTEE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEcCCCeEEEEECCCCcE----------------------------------EEEEccCCCCEEEEEEcCCCCEEEEec
Confidence 9999999999999865321 112346889999999999999999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeEE
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINAL 236 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i 236 (362)
.|++|++||++++++...+. +...+.+++++| ++. +++++.||.|++||+.++.....+. ....+|...|.++
T Consensus 185 ~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v 262 (393)
T 1erj_A 185 GDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 262 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred CCCcEEEEECCCCeeEEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence 99999999999998877664 567899999998 676 8899999999999998765332221 1124688999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCc--------EEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGN--------ILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDR 306 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~ 306 (362)
+|+|+|++|++|+.|++|++||+...... ......+.+|...|.++++++ .++++|+.|+.|++|+..
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~-- 340 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-- 340 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT--
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC--
Confidence 99999999999999999999998753211 112345678999999999975 489999999999999964
Q ss_pred ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 307 NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 307 ~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...++..+.+|...|.+++|++.. ...+.+.+|+|||.||+|+||++..
T Consensus 341 ~~~~~~~l~~h~~~v~~v~~~~~~---~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 341 SGNPLLMLQGHRNSVISVAVANGS---SLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSC---TTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCeEEEEECCCCCCEEEEEecCCc---CcCCCCCEEEEECCCCcEEECcccc
Confidence 356678899999999999998753 2345667899999999999999853
No 16
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.8e-39 Score=290.08 Aligned_cols=291 Identities=23% Similarity=0.361 Sum_probs=227.1
Q ss_pred ceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 10 HCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
++..||+||.+.|++|+|+ +++|||||.|++||+||+......... ....+..|...|.++.+.++ .|+++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~----~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI----PQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE----EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce----eeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 4667899999999999995 579999999999999998764321111 11223446778999988765 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|+.|++|+...... ......+...+..+.+++++++|++++.|+
T Consensus 105 ~~d~~i~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 150 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTT----------------------------------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 150 (340)
T ss_dssp ETTSEEEEEETTTTEE----------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred cccccceEEeecccce----------------------------------eeeecCCCCceeEEEEeecCccceeecCCC
Confidence 9999999999764321 011123456677888999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc---EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD---VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~---~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
.+++||+............|...+..++|++++. +++++.|+.|++||+.++. ....+.+|..+|++++|+|+
T Consensus 151 ~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~s~~ 226 (340)
T 4aow_A 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHIGHTGYLNTVTVSPD 226 (340)
T ss_dssp CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTT
T ss_pred eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc----eeeEecCCCCcEEEEEECCC
Confidence 9999999877665555568999999999987652 6789999999999998764 34455679999999999999
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeee--------
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLA-------- 312 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~-------- 312 (362)
+++|++|+.|+.|++||+.+.. .+..+.+ ...|.++.++++ .+++++.|+.|++|+.... .++.
T Consensus 227 ~~~l~s~s~Dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~ 299 (340)
T 4aow_A 227 GSLCASGGKDGQAMLWDLNEGK----HLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGK--IIVDELKQEVIS 299 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTTE----EEEEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT--EEEEEECCC---
T ss_pred CCEEEEEeCCCeEEEEEeccCc----eeeeecC-CceEEeeecCCCCceeeccCCCEEEEEECCCC--eEEEecccccee
Confidence 9999999999999999997643 2333443 457889999865 7888899999999996432 2222
Q ss_pred -EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 313 -VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 313 -~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...+|...|++++|+|++ .+|+|||.||+|+|||++.
T Consensus 300 ~~~~~h~~~v~~l~~s~dg---------~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 300 TSSKAEPPQCTSLAWSADG---------QTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp ----CCCCCEEEEEECTTS---------SEEEEEETTSCEEEEEEEC
T ss_pred eeccCCCCCEEEEEECCCC---------CEEEEEeCCCEEEEEeCCC
Confidence 345899999999998764 4699999999999999864
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-39 Score=313.17 Aligned_cols=295 Identities=18% Similarity=0.234 Sum_probs=230.9
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
+.+...+|.||.+.|++++|+ |++||||+.|++|||||+.+....... .+..|.+.|.++.+.++ .|++
T Consensus 48 ~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~-------~~~~~~~~v~~v~fs~dg~~l~~ 120 (611)
T 1nr0_A 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-------TIPVFSGPVKDISWDSESKRIAA 120 (611)
T ss_dssp CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-------EEECSSSCEEEEEECTTSCEEEE
T ss_pred CcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE-------eecccCCceEEEEECCCCCEEEE
Confidence 345777899999999999995 789999999999999998643322111 12345678999999875 4777
Q ss_pred EecC----CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEE
Q 044557 84 AHQD----HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLY 158 (362)
Q Consensus 84 ~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~ 158 (362)
++.+ +.|++||..... .++.+|.+.|.+++|+|++. .|+
T Consensus 121 ~~~~~~~~~~v~~wd~~~~~------------------------------------~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 121 VGEGRERFGHVFLFDTGTSN------------------------------------GNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp EECCSSCSEEEEETTTCCBC------------------------------------BCCCCCSSCEEEEEECSSSSCEEE
T ss_pred EECCCCceeEEEEeeCCCCc------------------------------------ceecCCCCCceEEEECCCCCeEEE
Confidence 7754 478888742100 01236889999999999987 699
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeeh---hhhcccccee
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVD---VLERHNSGIN 234 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~---~~~~h~~~v~ 234 (362)
+|+.|++|++||..++++...+. +|...|.+++|+|+|. +++++.|++|++||..++.....+.. ...+|...|.
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~ 243 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred EEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence 99999999999999988887764 7999999999999997 88999999999999887754322211 0116999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEe
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l 314 (362)
+++|+|+|++|++++.|++|++||+.+.+. ...+..-..+...+..+.+.+..+++++.|+.|++|+... ..+...+
T Consensus 244 ~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~--~~~~~~~ 320 (611)
T 1nr0_A 244 GLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL--GSIDQVR 320 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT--TEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCce-eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC--CCcceEE
Confidence 999999999999999999999999976432 1111111223445667778888999999999999999643 3467788
Q ss_pred cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 315 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+|...|++++|+|++ .+|+||+.|++|++||+..
T Consensus 321 ~gh~~~v~~l~~spdg---------~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 321 YGHNKAITALSSSADG---------KTLFSADAEGHINSWDIST 355 (611)
T ss_dssp CCCSSCEEEEEECTTS---------SEEEEEETTSCEEEEETTT
T ss_pred cCCCCCEEEEEEeCCC---------CEEEEEeCCCcEEEEECCC
Confidence 9999999999998764 4699999999999999853
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-39 Score=309.10 Aligned_cols=279 Identities=30% Similarity=0.512 Sum_probs=229.8
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
+.+++.++.+|.+.|.+++++ +++|++++.|++|++||..... . . .+..+...+.++.+.++ .+++
T Consensus 292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~--~-~-------~~~~~~~~v~~~~~s~~g~~l~~ 361 (577)
T 2ymu_A 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH--L-Q-------TLTGHSSSVWGVAFSPDGQTIAS 361 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--E-E-------EECCCSSCEEEEEECTTSSEEEE
T ss_pred CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--e-E-------EEeCCCCCEEEEEECCCCCEEEE
Confidence 456778899999999999994 7899999999999999975421 1 1 11234567788888765 5899
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|++|++|+..... ...+..|...|.+++|+|++++|++++.|
T Consensus 362 ~~~dg~v~~~~~~~~~-----------------------------------~~~~~~~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 362 ASDDKTVKLWNRNGQL-----------------------------------LQTLTGHSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp EETTSEEEEEETTCCE-----------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EeCCCEEEEEcCCCCE-----------------------------------EEEecCCCCCeEEEEECCCCCEEEEEeCC
Confidence 9999999999853210 11234578899999999999999999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
+.|++||.. ++.+..+. .|...|.+++|+|++. +++++.|++|++||... . ....+..|..+|.+++|+|++
T Consensus 407 ~~v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~----~~~~~~~~~~~v~~~~~spd~ 479 (577)
T 2ymu_A 407 KTVKLWNRN-GQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q----LLQTLTGHSSSVRGVAFSPDG 479 (577)
T ss_dssp SEEEEECTT-CCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C----EEEEEECCSSCEEEEEECTTS
T ss_pred CEEEEEeCC-CCEEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C----EEEEEcCCCCCEEEEEEcCCC
Confidence 999999964 55666664 7999999999999987 78999999999999643 2 334556799999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
++|++++.|+.|++||... + .+..+.+|...|.+++|+++ +|++++.|+.|++|+. ...++..+.+|.+.
T Consensus 480 ~~las~~~d~~i~iw~~~~-~----~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~---~~~~~~~~~~h~~~ 551 (577)
T 2ymu_A 480 QTIASASDDKTVKLWNRNG-Q----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSS 551 (577)
T ss_dssp CEEEEEETTSEEEEEETTS-C----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT---TSCEEEEEECCSSC
T ss_pred CEEEEEeCCCEEEEEcCCC-C----EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC---CCCEEEEEcCCCCC
Confidence 9999999999999999642 2 34567899999999999865 8999999999999994 34678899999999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
|++++|+|++ .+|+|||.|++|++||
T Consensus 552 v~~~~fs~dg---------~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 552 VWGVAFSPDG---------QTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECTTS---------SCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCC---------CEEEEEeCCCEEEEeC
Confidence 9999998765 4589999999999997
No 19
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.1e-39 Score=289.62 Aligned_cols=298 Identities=13% Similarity=0.137 Sum_probs=214.2
Q ss_pred cceeeeEec--CcEEEEecCCC-------eEEEeecCCCCcccceeeec-cceeEEeecceeEEEEEcCceeEEE-----
Q 044557 20 SYVSSLALA--GKFLYTGSSDN-------EVRSWDCNTFSSELDQEFLS-NNNIVAVGKGAVKSLVVLADKLFSA----- 84 (362)
Q Consensus 20 ~~V~~l~~~--~~~l~t~s~Dg-------~i~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~l~s~----- 84 (362)
-+|.+++|. +++||+||.|. .|++|++..........+.. ....+..+...+.++.+.++.++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~ 94 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS 94 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence 489999994 78999987644 59999986543221111110 0111122344566676666655554
Q ss_pred ------ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 85 ------HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 85 ------~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
+.|+++++|++............... .....+...+.+++|+|||++++
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDF-------------------------DASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEEECS-------------------------SCCCCTTCCEEEEEECTTSSCEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeeeece-------------------------eecCCcccCEEEEEEcCCCCEEE
Confidence 45778899987654321111000000 00012345678999999999887
Q ss_pred EEE--CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 159 SVS--WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 159 s~s--~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
+++ .|++|+|||+++++++..+. |...|.+++|+|+|++++.+.++.+++|+..++.... ......|...|.++
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA--RKTDFDKNWSLSKI 225 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE--EECCCCTTEEEEEE
T ss_pred EEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccceeEEEEEeccCccee--eeecCCCCCCEEEE
Confidence 554 78999999999999887764 7778999999999985554456667777776654322 22345688899999
Q ss_pred EEecCCCEEEEEcCCC----cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceee
Q 044557 237 ALSCDGSVLYSGACDR----SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTC 310 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~ 310 (362)
+|+|++.++++++.|+ .++.|+.............+.+|...|.+++|+++ +|++|+.|++|+|||.. ++++
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~--~~~~ 303 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLK--DLSM 303 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETT--TTEE
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECC--CCcE
Confidence 9999999999999888 58889887654444445667889999999999875 89999999999999964 4566
Q ss_pred eeE-ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 311 LAV-LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 311 ~~~-l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.. +.+|...|++++|+|++ .+|||||.|++||||+++
T Consensus 304 ~~~~~~gH~~~V~~v~fSpdg---------~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 304 SKIFKQAHSFAITEVTISPDS---------TYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEETTSSSSCEEEEEECTTS---------CEEEEEETTSEEEEEECC
T ss_pred EEEecCcccCCEEEEEECCCC---------CEEEEEeCCCeEEEEEcC
Confidence 776 57999999999998765 479999999999999995
No 20
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.4e-38 Score=275.32 Aligned_cols=254 Identities=19% Similarity=0.304 Sum_probs=201.1
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCc
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHK 89 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~ 89 (362)
+.++.+|.+.|++++|+ |++||||+.|++|++||++......
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~------------------------------------ 45 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKL------------------------------------ 45 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCC------------------------------------
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEE------------------------------------
Confidence 45688999999999994 8899999999999999964311000
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCEEEEEECCCcEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETLLYSVSWDRTIK 167 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~ 167 (362)
..++.+|.+.|.+++|+| ++++|++|+.|++|+
T Consensus 46 ---------------------------------------------~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 46 ---------------------------------------------IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp ---------------------------------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ---------------------------------------------EEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 001235888999999976 389999999999999
Q ss_pred EEECCCce--EEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC-
Q 044557 168 IWRTSDFK--CLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD- 241 (362)
Q Consensus 168 iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~- 241 (362)
+||+++++ .+..+ ..|...|.+++|+|+ +. +++++.||+|++||+.+..... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 81 IWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEBSSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCCC
T ss_pred EEEcCCCceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee--eeeeecccCccceEeecCCc
Confidence 99998764 33333 368999999999997 54 8899999999999997653211 1234679999999999997
Q ss_pred ------------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-----eEEEeeCCCcEEEeeCC
Q 044557 242 ------------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-----LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 242 ------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~s~s~D~~i~~W~~~ 304 (362)
+++|++|+.|++|++||+............+.+|...|.+++|+++ +++|+|.|++|++|+..
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 5799999999999999998755444456678999999999999863 79999999999999964
Q ss_pred CCcee-eeeEe--cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 305 DRNYT-CLAVL--EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 305 ~~~~~-~~~~l--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..... ....+ .+|...|++++|+|++ .+|++|+.|++|+||+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSS---------CCEEEEETTSCEEEEEECT
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCC---------CEEEEEcCCCcEEEEEECC
Confidence 42211 11233 5789999999998765 4699999999999999863
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.9e-38 Score=275.46 Aligned_cols=243 Identities=22% Similarity=0.323 Sum_probs=203.1
Q ss_pred EEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 64 VAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
+..|...|.++.+.++ .|++++.||+|++||+..+.. ...+..|
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~----------------------------------~~~~~~~ 54 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE----------------------------------VRSIQVT 54 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE----------------------------------EEEEECC
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce----------------------------------eEEeecc
Confidence 4457788999999875 499999999999999865321 1123457
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
...|.+++|+|++++|++|+.|++|++||+++++++..+. +|...|.+++|+|++. +++|+.||+|++||+.++.
T Consensus 55 ~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--- 130 (304)
T 2ynn_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--- 130 (304)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---
T ss_pred CCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---
Confidence 7889999999999999999999999999999999888775 7999999999999987 8899999999999987653
Q ss_pred eeehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC----CeEEEeeCC
Q 044557 221 SLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS----DLVCSGSAD 295 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~s~s~D 295 (362)
.+...+.+|...|.+++|+| ++..|++|+.|++|++||+......... ..+|...+.++.+.+ .++++++.|
T Consensus 131 ~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---ECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---ccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence 23345678999999999999 6789999999999999999765543322 345667788888753 389999999
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++|++||.. ...++.++.+|...|.+++|+|++ .+|+|||.||+|++||+..
T Consensus 208 ~~i~iWd~~--~~~~~~~~~~h~~~v~~~~~~p~~---------~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 208 LTIKIWDYQ--TKSCVATLEGHMSNVSFAVFHPTL---------PIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp SEEEEEETT--TTEEEEEEECCSSCEEEEEECSSS---------SEEEEEETTSCEEEEETTT
T ss_pred CeEEEEeCC--CCccceeeCCCCCCEEEEEECCCC---------CEEEEEcCCCeEEEEECCC
Confidence 999999964 457789999999999999998764 4699999999999999854
No 22
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-37 Score=305.16 Aligned_cols=290 Identities=23% Similarity=0.340 Sum_probs=222.5
Q ss_pred ceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 10 HCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
++...|++|.+.|++|++. +++|+|||.|++|++||+......... ....+..|...|.++.+.++ .|+++
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~----~~~~~~~h~~~v~~v~~s~~g~~l~sg 448 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV----AQRRLTGHSHFVEDVVLSSDGQFALSG 448 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE----EEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc----ccceecCCCCcEEEEEECCCCCEEEEE
Confidence 4556799999999999995 468999999999999998653221110 11234456778999988764 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|++|++||+..+.. ...+.+|...|.+++|+|++++|++|+.|+
T Consensus 449 s~Dg~v~vwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~ 494 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVS----------------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDR 494 (694)
T ss_dssp ETTSEEEEEETTTTEE----------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred eCCCcEEEEECCCCcc----------------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 9999999999865321 112357899999999999999999999999
Q ss_pred cEEEEECCCceEEEee--eccCcccEEEEEEcCCC---cEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 165 TIKIWRTSDFKCLESI--TNAHDDAINAVALSDDG---DVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~--~~~h~~~v~~v~~~~~~---~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
+|++||.......... ..+|...|.+++|+|++ .+++++.|++|++||+.+.. +...+.+|...|++++|+
T Consensus 495 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~h~~~v~~v~~s 570 (694)
T 3dm0_A 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK----LRSTLAGHTGYVSTVAVS 570 (694)
T ss_dssp CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEEC
T ss_pred EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEe
Confidence 9999998765433221 23688899999999986 38899999999999998654 334556899999999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCCC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHR 318 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~ 318 (362)
|++++|++|+.|++|++||+.+.. .+..+. +...|.+++|+++ .+++++.|+.|++|+... ..++..+..|.
T Consensus 571 pdg~~l~sg~~Dg~i~iwd~~~~~----~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~--~~~~~~~~~~~ 643 (694)
T 3dm0_A 571 PDGSLCASGGKDGVVLLWDLAEGK----KLYSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLES--KSIVEDLKVDL 643 (694)
T ss_dssp TTSSEEEEEETTSBCEEEETTTTE----EEECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTT--TEEEEEECCCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCc----eEEEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCC--CCChhhhcccc
Confidence 999999999999999999997643 233444 3456899999876 555666778899999654 33444443221
Q ss_pred -------------------CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 319 -------------------GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 319 -------------------~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
-.+++++|+|++ .+|+|||.||+|+||++.
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg---------~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 644 KAEAEKADNSGPAATKRKVIYCTSLNWSADG---------STLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp C----------------CCCCEEEEEECTTS---------SEEEEEETTSEEEEEEC-
T ss_pred ccccccccccccccCCceeEEeeeEEEcCCC---------CEEEEEcCCCeEEEEecc
Confidence 236788887654 579999999999999985
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.9e-37 Score=296.98 Aligned_cols=282 Identities=30% Similarity=0.518 Sum_probs=232.2
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
+.+++.++.+|...|.++.|. ++++++++.|++|++||.+.. ... .+..|...+.++.+.++ .+++
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~---~~~-------~~~~h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ---LLQ-------TLTGHSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEE-------EECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---EEE-------EEecCCCCeEEEEECCCCCEEEE
Confidence 456788899999999999994 789999999999999996431 111 12235667888888764 5899
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|++|++|+..... + ..+..|...+.+++|+|++++|++++.|
T Consensus 321 ~~~d~~i~~w~~~~~~--------~---------------------------~~~~~~~~~v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 321 ASDDKTVKLWNRNGQH--------L---------------------------QTLTGHSSSVWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp EETTSCEEEEETTSCE--------E---------------------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeCCCeEEEEeCCCCe--------e---------------------------EEEeCCCCCEEEEEECCCCCEEEEEeCC
Confidence 9999999999975321 0 1123577889999999999999999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
+.|++||.. ++.+..+. .|...|.+++|+|+++ +++++.|+.|++||.. +. ....+..|..+|++++|+||+
T Consensus 366 g~v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~----~~~~~~~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 366 KTVKLWNRN-GQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ----LLQTLTGHSSSVWGVAFSPDD 438 (577)
T ss_dssp SEEEEEETT-CCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CC----EEEEEECCSSCEEEEEECTTS
T ss_pred CEEEEEcCC-CCEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CC----EEEEecCCCCCeEEEEECCCC
Confidence 999999964 55666664 7899999999999997 8899999999999953 22 344566799999999999999
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCc
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGP 320 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~ 320 (362)
++|++++.|++|++||... + .+..+.+|...|.+++|+++ ++++++.|+.|++|+. ..+++..+.+|...
T Consensus 439 ~~l~~~~~d~~v~~w~~~~-~----~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~---~~~~~~~~~~h~~~ 510 (577)
T 2ymu_A 439 QTIASASDDKTVKLWNRNG-Q----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSS 510 (577)
T ss_dssp SEEEEEETTSEEEEEETTS-C----EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET---TSCEEEEEECCSSC
T ss_pred CEEEEEcCCCEEEEEECCC-C----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC---CCCEEEEEeCCCCC
Confidence 9999999999999999643 1 34567889999999999865 8999999999999994 34678899999999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++++|+|++ .+|++|+.||.|++||...
T Consensus 511 v~~l~~s~dg---------~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 511 VRGVAFSPDG---------QTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EEEEEECTTS---------SCEEEEETTSEEEEECTTS
T ss_pred EEEEEEcCCC---------CEEEEEECcCEEEEEeCCC
Confidence 9999998764 4699999999999999753
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-37 Score=283.22 Aligned_cols=307 Identities=17% Similarity=0.205 Sum_probs=234.0
Q ss_pred cceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---------c
Q 044557 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---------D 79 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---------~ 79 (362)
.++.++|++|.+.|++++|++++|++|+.||+|++||+.......... ....+..+...+.++.+.+ +
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKD---KSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGG---GEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCC---cceEEecCCCcEEEEEEecccccCCcccc
Confidence 356778999999999999998999999999999999987643111000 0112234567888888764 4
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee-----cCceeEEEEe---
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH-----VDAVSALALT--- 151 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~--- 151 (362)
.|++++.|+.|++|++......... ....+..| ...|.+++|+
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKV-----------------------------IFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCE-----------------------------EEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred EEEEEcCCCCEEEEEccCCcccccc-----------------------------cceeecccccccCCCcEEEEEEeecc
Confidence 5899999999999998754321000 00112234 4789999999
Q ss_pred -cCCCE-EEEEECCCcEEEEECCC------ceEEE-----eee------ccCcccEEEEEEcCCCcEEEEeCCCeEEEEe
Q 044557 152 -KDETL-LYSVSWDRTIKIWRTSD------FKCLE-----SIT------NAHDDAINAVALSDDGDVYTGSADKKIKVWR 212 (362)
Q Consensus 152 -~~~~~-l~s~s~d~~i~iwd~~~------~~~~~-----~~~------~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~ 212 (362)
|++++ |++++.|+.|++||++. .+.+. .+. ..|...|.+++|+|++.+++++.||.|++||
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 213 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEE
Confidence 99999 99999999999999987 55444 442 3578899999999988667889999999999
Q ss_pred CCCCCCcceeehhhhc---c---ccceeEEEEecCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecC---------
Q 044557 213 RSPGNKKHSLVDVLER---H---NSGINALALSCDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRG--------- 274 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~---h---~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~--------- 274 (362)
+.++. ....+.. | ..+|.+++|+|++.+|++++.| +.|++||+.+.. .+..+.+
T Consensus 214 ~~~~~----~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~----~~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 214 LSTLR----PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE----RIGSLSVPTHSSQASL 285 (397)
T ss_dssp TTTTE----EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC----EEEEECBC--------
T ss_pred CCCCc----eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc----ccceeccCcccccccc
Confidence 98754 2334445 7 8899999999999999999999 999999998643 3445666
Q ss_pred ----ccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEec------CC---------------CCcEEEEEee
Q 044557 275 ----HTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLE------GH---------------RGPVKCLAAA 327 (362)
Q Consensus 275 ----h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~------~h---------------~~~v~~~~~~ 327 (362)
|...|.+++|+++ ++++++.|+.|++|+.. ..+++..+. +| ...|.+++|+
T Consensus 286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 363 (397)
T 1sq9_A 286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK--TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 363 (397)
T ss_dssp CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT--TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC--CCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence 8999999999854 89999999999999964 356788888 88 9999999999
Q ss_pred ecCCccCC-CCCceEEEecCCCCcEEEEecc
Q 044557 328 IDNDRCDS-SDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 328 ~~~~~~~~-~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|++..... ...+.+|++|+.||.|++|+++
T Consensus 364 ~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 364 KKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp CTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cccccccccccccceEEEecCCCcEEEEEcC
Confidence 87532111 0122579999999999999985
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.9e-37 Score=278.50 Aligned_cols=296 Identities=13% Similarity=0.122 Sum_probs=222.0
Q ss_pred ccceeeecccCccceeeeEec--C-cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---cee
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--G-KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKL 81 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~-~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l 81 (362)
+.++.+++.+|.+.|.+++|+ + ++|++|+.||+|++||+.+..... .+. ...+...+.++.+.+ +.+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~-----~~~h~~~v~~~~~~~~~~~~l 134 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS--FIQ-----GMGPGDAITGMKFNQFNTNQL 134 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE--EEC-----CCSTTCBEEEEEEETTEEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce--eee-----cCCcCCceeEEEeCCCCCCEE
Confidence 456788899999999999995 5 799999999999999987543211 110 012567888998876 359
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++++.|++|++||+.... ...+. ....|...|.+++|+|++++|++|+
T Consensus 135 ~s~~~d~~i~iwd~~~~~--------~~~~~------------------------~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSGSV--------IQVFA------------------------KTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EEEETTTEEEEEETTSCE--------EEEEE------------------------CCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred EEEeCCCEEEEEECCCCc--------eEEEe------------------------ccCCCCCCeEEEEECCCCCEEEEEC
Confidence 999999999999986321 00000 0013457899999999999999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
.|+.|++||++ ++.+..+. .|...|.+++|+|++. +++++.|+.|++||+.+......+...+ .|..+|.+++|+
T Consensus 183 ~d~~i~i~d~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 183 STGRLLLLGLD-GHEIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp TTSEEEEEETT-SCEEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred CCCCEEEEECC-CCEEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence 99999999994 55666664 7999999999999986 7899999999999998754333344333 589999999999
Q ss_pred c-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEe---ecCccc----------eeEEEEEeCC-eEEEeeCCCcEEEeeCC
Q 044557 240 C-DGSVLYSGACDRSIIVWEKEEDDGNILVVGA---LRGHTK----------SILCMAVVSD-LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 240 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~h~~----------~v~~~~~~~~-~~~s~s~D~~i~~W~~~ 304 (362)
| ++.+|++++.|+.|++||+.+.......... ...|.. .+..++++++ .+ +++.|+.|++|+..
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN 338 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence 9 9999999999999999999875543222211 011222 2334555443 23 88899999999964
Q ss_pred CCceeeeeEecC--CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 305 DRNYTCLAVLEG--HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 305 ~~~~~~~~~l~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
. ..++..+.+ |...+..++|+|++ .+|++|+ |+.|++||++.
T Consensus 339 ~--~~~~~~l~~~~~~~~~~~~~~s~~g---------~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 S--GGLVHQLRDPNAAGIISLNKFSPTG---------DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp T--CCEEEEECBTTBCSCCCEEEECTTS---------SEEEEEE-TTEEEEEECC-
T ss_pred C--CceeeeecCCCCCceEEEEEEecCc---------cEEEEec-CCcEEEEecCC
Confidence 3 456778876 56778888997654 4688997 99999999974
No 26
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.8e-37 Score=276.00 Aligned_cols=294 Identities=14% Similarity=0.156 Sum_probs=224.5
Q ss_pred cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecCCcE
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQDHKI 90 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~dg~i 90 (362)
+..|.++|.+++|+ +++|++|+.|+.|++||+.+...... ..+..|...+.++.+.+ +.+++++.|+.|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV-------HELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE-------EEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEee-------eeecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence 45699999999994 78999999999999999865321111 12234567888888875 469999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
++|++...+.. .......|...|.+++|+|++++|++++.|+.|++||
T Consensus 77 ~vwd~~~~~~~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d 124 (372)
T 1k8k_C 77 YVWTLKGRTWK--------------------------------PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 124 (372)
T ss_dssp EEEEEETTEEE--------------------------------EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEE
T ss_pred EEEECCCCeee--------------------------------eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEE
Confidence 99998643210 0011134778899999999999999999999999999
Q ss_pred CCCce---EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC--------------Ccceeehhhhccccc
Q 044557 171 TSDFK---CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN--------------KKHSLVDVLERHNSG 232 (362)
Q Consensus 171 ~~~~~---~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~--------------~~~~~~~~~~~h~~~ 232 (362)
++..+ ....+...|...|.+++|+|++. +++++.||.|++||+.... ........+..|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
T 1k8k_C 125 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204 (372)
T ss_dssp EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred ecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence 98765 34445567899999999999987 8899999999999964211 112334455678899
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC--Cce
Q 044557 233 INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID--RNY 308 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~--~~~ 308 (362)
|.+++|+|++.+|++++.|+.|++||+.+.+ .+..+.+|...|.+++|+++ +++++ .|+.|++|+... ..+
T Consensus 205 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWVSHDSTVCLADADKKM----AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKL 279 (372)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEEGGGTT----EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCc----eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceE
Confidence 9999999999999999999999999998654 34556788889999999754 55555 999999999654 222
Q ss_pred eee------------------------------------eEe-cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcE
Q 044557 309 TCL------------------------------------AVL-EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 309 ~~~------------------------------------~~l-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i 351 (362)
.++ ..+ .+|.+.|+++++.+... .++.+|+|||.||+|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g-----~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK-----AKCSQFCTTGMDGGM 354 (372)
T ss_dssp EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT-----TSCSEEEEEETTSEE
T ss_pred EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCC-----cceeeEEEecCCCce
Confidence 111 233 49999999999765321 012579999999999
Q ss_pred EEEecc
Q 044557 352 KVWQIS 357 (362)
Q Consensus 352 ~~W~~~ 357 (362)
++|++.
T Consensus 355 ~~W~~~ 360 (372)
T 1k8k_C 355 SIWDVR 360 (372)
T ss_dssp EEEEHH
T ss_pred EEEEec
Confidence 999985
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-36 Score=265.75 Aligned_cols=285 Identities=23% Similarity=0.363 Sum_probs=227.2
Q ss_pred eccceeeecccCccceeeeEe-cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 7 VDHHCLTTLKGHNSYVSSLAL-AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~-~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
...++.++|++|.+.|+++++ ++++|++|+.||+|++||+.+.. .. .....+...+.++.+.++ .+++
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~--~~-------~~~~~~~~~v~~~~~~~~~~~l~~ 76 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQW--LG-------TVVYTGQGFLNSVCYDSEKELLLF 76 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSE--EE-------EEEEECSSCEEEEEEETTTTEEEE
T ss_pred ccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCE--EE-------EEeecCCccEEEEEECCCCCEEEE
Confidence 456788999999999999998 57899999999999999986532 11 122345678888888754 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.|+.|++|++....... ....+..|...|.+++| ++++|++++.|
T Consensus 77 ~~~dg~i~~~~~~~~~~~~-------------------------------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d 123 (313)
T 3odt_A 77 GGKDTMINGVPLFATSGED-------------------------------PLYTLIGHQGNVCSLSF--QDGVVISGSWD 123 (313)
T ss_dssp EETTSCEEEEETTCCTTSC-------------------------------C-CEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred ecCCCeEEEEEeeecCCCC-------------------------------cccchhhcccCEEEEEe--cCCEEEEEeCC
Confidence 9999999999986533110 01122357888999998 57799999999
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc-cccceeEEEEec
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER-HNSGINALALSC 240 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~ 240 (362)
+.|++|| ..+....+. .|...+.++++.| ++. +++++.||.|++||... ....+.. |...|.+++|+|
T Consensus 124 ~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~i~~~~~~~ 194 (313)
T 3odt_A 124 KTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK------VIKTFSGIHNDVVRHLAVVD 194 (313)
T ss_dssp SEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE------EEEEECSSCSSCEEEEEEEE
T ss_pred CCEEEEc--CCcEEEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc------eEEEEeccCcccEEEEEEcC
Confidence 9999999 555555554 6899999999987 554 88999999999999322 2223333 888999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG 319 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~ 319 (362)
++. +++++.|+.|++||+.+.+ .+..+.+|...|.+++++++ .+++++.|+.|++|+.. ..+++..+.+|..
T Consensus 195 ~~~-~~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~ 267 (313)
T 3odt_A 195 DGH-FISCSNDGLIKLVDMHTGD----VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKE--NGSLKQVITLPAI 267 (313)
T ss_dssp TTE-EEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTT--TCCEEEEEECSSS
T ss_pred CCe-EEEccCCCeEEEEECCchh----hhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECC--CCceeEEEeccCc
Confidence 998 9999999999999998643 34567789999999999876 89999999999999964 3566888999999
Q ss_pred cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 320 PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.|.+++|+|++ . +++++.||.|++||+...
T Consensus 268 ~i~~~~~~~~~---------~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 268 SIWSVDCMSNG---------D-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CEEEEEECTTS---------C-EEEEETTSCEEEEESCGG
T ss_pred eEEEEEEccCC---------C-EEEEeCCCcEEEEeCCCC
Confidence 99999998753 3 567899999999999643
No 28
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-38 Score=285.33 Aligned_cols=298 Identities=12% Similarity=0.109 Sum_probs=215.6
Q ss_pred ecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCc
Q 044557 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHK 89 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~ 89 (362)
.++.|.++|++++|+ +++|++|+.|++|++||+.+....... .+..|...+.++.+.++ .|++++.|++
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~-------~~~~h~~~v~~~~~s~~~~~l~s~s~d~~ 78 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR-------TFSDHDKIVTCVDWAPKSNRIVTCSQDRN 78 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC-------CBCCCSSCEEEEEECTTTCCEEEEETTSS
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE-------EEecCCceEEEEEEeCCCCEEEEEeCCCe
Confidence 345578899999995 789999999999999998753111111 12235678889988764 5999999999
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIW 169 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iw 169 (362)
|++||+....... ....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 79 v~vwd~~~~~~~~-------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 127 (377)
T 3dwl_C 79 AYVYEKRPDGTWK-------------------------------QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVC 127 (377)
T ss_dssp EEEC------CCC-------------------------------CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEEC
T ss_pred EEEEEcCCCCcee-------------------------------eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEE
Confidence 9999987543000 011223578899999999999999999999999999
Q ss_pred ECCCce---EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC--------------Ccceeehhhhcccc
Q 044557 170 RTSDFK---CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN--------------KKHSLVDVLERHNS 231 (362)
Q Consensus 170 d~~~~~---~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~--------------~~~~~~~~~~~h~~ 231 (362)
|+++.+ +...+...|...|.+++|+|++. +++++.||.|++||+.... ....+...+ .|..
T Consensus 128 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 206 (377)
T 3dwl_C 128 YFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG 206 (377)
T ss_dssp CC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS
T ss_pred EECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc
Confidence 998876 35556544999999999999987 8899999999999986332 112233444 7899
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCcee
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
+|.+++|+|++++|++++.|+.|++||+.+.......+..+.+|...|.+++|+++ ++++++.|+.+ +|+.......
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~ 285 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWA 285 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---C
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceE
Confidence 99999999999999999999999999998776544445677889999999999754 77888766666 6653311100
Q ss_pred ee-------------------------------------e-------------EecCCCCcEEEEEeeecCCccCCCCCc
Q 044557 310 CL-------------------------------------A-------------VLEGHRGPVKCLAAAIDNDRCDSSDTS 339 (362)
Q Consensus 310 ~~-------------------------------------~-------------~l~~h~~~v~~~~~~~~~~~~~~~~~~ 339 (362)
.. . ...+|.+.|+++++.+.... ..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~-----~~ 360 (377)
T 3dwl_C 286 HTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG-----NI 360 (377)
T ss_dssp CSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT-----EE
T ss_pred EEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC-----ce
Confidence 00 0 11239999999997764321 12
Q ss_pred eEEEecCCCCcEEEEec
Q 044557 340 YLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 340 ~~l~s~s~D~~i~~W~~ 356 (362)
..|+|||.||.|++||+
T Consensus 361 ~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 361 TAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEETTSEEEEECC
T ss_pred EEEEeecCCCcEEEecC
Confidence 36899999999999986
No 29
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-37 Score=281.76 Aligned_cols=242 Identities=26% Similarity=0.481 Sum_probs=207.9
Q ss_pred eEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 63 IVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 63 ~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
.+..|...|.++.+.++ .+++++.|++|++||+..+... .++.+
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~----------------------------------~~l~~ 148 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE----------------------------------RTLKG 148 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC----------------------------------EEECC
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE----------------------------------EEEec
Confidence 44567789999999865 5999999999999998764321 12346
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
|.+.|.+++|+|++++|++|+.|++|++||+.+++++..+. +|...|.+++|+|++. +++++.|++|++||+.++..
T Consensus 149 h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~- 226 (410)
T 1vyh_C 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC- 226 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-
Confidence 88999999999999999999999999999999999888775 7999999999999987 88999999999999987753
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-------------
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS------------- 286 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~------------- 286 (362)
...+.+|...|.++.++|++.+|++|+.|++|++||+.+.. ....+.+|...|.+++|++
T Consensus 227 ---~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 227 ---VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp ---EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred ---EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc----eeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence 33456799999999999999999999999999999998644 2345788999999999975
Q ss_pred ---------CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 287 ---------DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 287 ---------~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.++++|+.|++|++||.. ...++..+.+|...|.+++|+|++ .+|+|||.|++|++||+.
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~--~~~~~~~~~~h~~~v~~v~~~~~g---------~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVS--TGMCLMTLVGHDNWVRGVLFHSGG---------KFILSCADDKTLRVWDYK 368 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEECSSS---------SCEEEEETTTEEEEECCT
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECC--CCceEEEEECCCCcEEEEEEcCCC---------CEEEEEeCCCeEEEEECC
Confidence 379999999999999964 456788999999999999998654 468999999999999985
Q ss_pred c
Q 044557 358 F 358 (362)
Q Consensus 358 ~ 358 (362)
.
T Consensus 369 ~ 369 (410)
T 1vyh_C 369 N 369 (410)
T ss_dssp T
T ss_pred C
Confidence 3
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.7e-36 Score=273.26 Aligned_cols=294 Identities=17% Similarity=0.284 Sum_probs=224.4
Q ss_pred cccCccceeeeEec------CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc------eeE
Q 044557 15 LKGHNSYVSSLALA------GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD------KLF 82 (362)
Q Consensus 15 l~gH~~~V~~l~~~------~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------~l~ 82 (362)
+.+|.++|.+++|+ ...+++++.++.|++||+.+.... ..+... ....+...+.++.+.++ .|+
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--RLLQSY--VDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--EEEEEE--ECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--Eeeeec--cccCCCCcEEEEEeccCCCCCCCEEE
Confidence 45999999999997 245777777789999998753211 111100 00013456888888765 699
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s 161 (362)
+++.||.|++||+...+. ...+..|...|.+++|+| ++++|++|+
T Consensus 90 ~~~~dg~i~v~d~~~~~~----------------------------------~~~~~~~~~~i~~~~~~~~~~~~l~s~~ 135 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQC----------------------------------IKHYVGHGNAINELKFHPRDPNLLLSVS 135 (366)
T ss_dssp EEETTCEEEEECTTTCCE----------------------------------EEEEESCCSCEEEEEECSSCTTEEEEEE
T ss_pred EecCCCEEEEEEchhceE----------------------------------eeeecCCCCcEEEEEECCCCCCEEEEEe
Confidence 999999999999875431 112235888999999999 899999999
Q ss_pred CCCcEEEEECCCceEEEeee--ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee---------------
Q 044557 162 WDRTIKIWRTSDFKCLESIT--NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV--------------- 223 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~--~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~--------------- 223 (362)
.|+.|++||+++++.+..+. ..|...|.+++|+|++. +++++.||.|++||+.++.....+.
T Consensus 136 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
T 3k26_A 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215 (366)
T ss_dssp TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC
T ss_pred CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccc
Confidence 99999999999998877763 47899999999999986 8899999999999997653211110
Q ss_pred ---------hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC----------cEEEEEeecCccceeEEEEE
Q 044557 224 ---------DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG----------NILVVGALRGHTKSILCMAV 284 (362)
Q Consensus 224 ---------~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~----------~~~~~~~~~~h~~~v~~~~~ 284 (362)
.....|...|.+++|+ +.+|++++.|+.|++||+..... ....+..+.+|...|.++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (366)
T 3k26_A 216 SQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 293 (366)
T ss_dssp CEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC
T ss_pred ceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE
Confidence 0112288999999998 77999999999999999875432 22456677889988988877
Q ss_pred e----CCeEEEeeCCCcEEEeeCCCCce--eeeeEecCC--CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 285 V----SDLVCSGSADKTIRIWRGIDRNY--TCLAVLEGH--RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 285 ~----~~~~~s~s~D~~i~~W~~~~~~~--~~~~~l~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+ +.++++++.|+.|++|+...... .....+.+| ...|.+++|+|++ .+|++|+.||.|++||+
T Consensus 294 s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 294 SMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS---------SILIAVCDDASIWRWDR 364 (366)
T ss_dssp EECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS---------SEEEEEETTSEEEEEEC
T ss_pred cCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC---------CeEEEEeCCCEEEEEEe
Confidence 5 45899999999999999754221 234577787 7999999998754 46999999999999998
Q ss_pred c
Q 044557 357 S 357 (362)
Q Consensus 357 ~ 357 (362)
.
T Consensus 365 ~ 365 (366)
T 3k26_A 365 L 365 (366)
T ss_dssp -
T ss_pred c
Confidence 5
No 31
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=270.60 Aligned_cols=241 Identities=21% Similarity=0.283 Sum_probs=199.8
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~ 86 (362)
+..+|+||...|.++.+. +.+++||+.|++|++||+.+... .. .+..+...+.++.+.++ .|++++.
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~--~~-------~~~~~~~~~~~~~~spdg~~l~~g~~ 142 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ--IK-------SIDAGPVDAWTLAFSPDSQYLATGTH 142 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--EE-------EEECCTTCCCCEEECTTSSEEEEECT
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE--EE-------EEeCCCccEEEEEECCCCCEEEEEcC
Confidence 455789999999999995 67999999999999999875421 11 11223445666777654 5999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
|+.|++|+++.+.. ...+..|...+.+++|+|++++|++|+.|+.|
T Consensus 143 dg~v~i~~~~~~~~----------------------------------~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i 188 (321)
T 3ow8_A 143 VGKVNIFGVESGKK----------------------------------EYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188 (321)
T ss_dssp TSEEEEEETTTCSE----------------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCcEEEEEcCCCce----------------------------------eEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence 99999999875431 01123466789999999999999999999999
Q ss_pred EEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE
Q 044557 167 KIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL 245 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 245 (362)
++||+++++++..+. +|..+|.+++|+|++. +++++.||+|++||+.++. ....+.+|...|.+++|+|++.+|
T Consensus 189 ~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l 263 (321)
T 3ow8_A 189 NIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN----LAGTLSGHASWVLNVAFCPDDTHF 263 (321)
T ss_dssp EEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc----eeEEEcCCCCceEEEEECCCCCEE
Confidence 999999999888775 7999999999999997 8899999999999998764 334566899999999999999999
Q ss_pred EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 246 YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 246 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
++++.|++|++||+.+.. .+..+.+|...|.+++|+++ +|++++.|++|++|++
T Consensus 264 ~s~s~D~~v~iwd~~~~~----~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 264 VSSSSDKSVKVWDVGTRT----CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEeCCCcEEEEeCCCCE----EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 999999999999997543 45567889999999999865 8999999999999984
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=270.42 Aligned_cols=251 Identities=24% Similarity=0.420 Sum_probs=195.3
Q ss_pred EEeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC
Q 044557 64 VAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD 143 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 143 (362)
+..|.+.|.++.+.++.|++++.|++|++|++...... ....+ ....|.+
T Consensus 10 ~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~-----~~~~~-------------------------~~~~h~~ 59 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFT-----LIDVL-------------------------DETAHKK 59 (330)
T ss_dssp EECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCE-----EEEEE-------------------------CTTCCCS
T ss_pred eccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeE-----EEEEE-------------------------ecCCccC
Confidence 34567889999999999999999999999998643210 00000 0013888
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCC-------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCC
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSD-------FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSP 215 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~ 215 (362)
.|.+++|+|++++|++|+.|++|+|||++. .+++..+ .+|...|.+++|+|++. |++++.|++|++||+..
T Consensus 60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 999999999999999999999999999853 2344444 47999999999999997 88999999999999954
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC----eEEE
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD----LVCS 291 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~s 291 (362)
..........+.+|..+|.+++|+|++.+|++|+.|++|++||.... ....+..+.+|...|.+++|+++ ++++
T Consensus 139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 216 (330)
T 2hes_X 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD--DWECVAVLNGHEGTVWSSDFDKTEGVFRLCS 216 (330)
T ss_dssp TCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred CCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC--CeeEEEEccCCCCcEEEEEecCCCCeeEEEE
Confidence 33333445566789999999999999999999999999999998753 22345678899999999999864 6999
Q ss_pred eeCCCcEEEeeCCCC------ceeeeeEecC-CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 292 GSADKTIRIWRGIDR------NYTCLAVLEG-HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~------~~~~~~~l~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++.|++|++|+.... ...+...+.+ |...|.+++|+++ .+|++|+.||+|++||..
T Consensus 217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----------~~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN----------GLIASVGADGVLAVYEEV 279 (330)
T ss_dssp EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT----------SCEEEEETTSCEEEEEEE
T ss_pred EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC----------CEEEEEeCCCEEEEEEcC
Confidence 999999999985321 1245556665 9999999999743 258999999999999974
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-35 Score=262.67 Aligned_cols=284 Identities=19% Similarity=0.350 Sum_probs=225.1
Q ss_pred cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcE
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKI 90 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i 90 (362)
..+|...|.+++|+ +++|++++ ||.|++||+............. ...+...+.++.+.++ .+++++.|+.|
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD----CLNRDNYIRSCKLLPDGCTLIVGGEASTL 121 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE----CSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc----ccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 45899999999995 77999998 9999999987643211111000 0024567888888754 59999999999
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
++|++...... ....+..|...+.+++|+|++++|++++.|+.|++||
T Consensus 122 ~~~d~~~~~~~--------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d 169 (337)
T 1gxr_A 122 SIWDLAAPTPR--------------------------------IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169 (337)
T ss_dssp EEEECCCC--E--------------------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEECCCCCcc--------------------------------eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 99998754310 0112235778899999999999999999999999999
Q ss_pred CCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 171 TSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 171 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
+++++.+..+. .|...+.+++|+|++. +++++.||.|++||+.++..... ..+..++.+++|+|++.+|++++
T Consensus 170 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 170 LHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-----HDFTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp TTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-----EECSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-----ecCCCceEEEEECCCCCEEEEEc
Confidence 99998887775 6889999999999986 88999999999999987643222 24678899999999999999999
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.|+.|++||+...+ . ..+..|...|.+++++++ ++++++.|+.|++|+..... .+ ....|...|.+++|+
T Consensus 244 ~~~~i~~~~~~~~~--~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~--~~-~~~~~~~~v~~~~~s 315 (337)
T 1gxr_A 244 ESSNVEVLHVNKPD--K---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--SI-FQSKESSSVLSCDIS 315 (337)
T ss_dssp TTSCEEEEETTSSC--E---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EE-EEEECSSCEEEEEEC
T ss_pred CCCcEEEEECCCCC--e---EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe--EE-EEecCCCcEEEEEEC
Confidence 99999999998643 1 246789999999999854 89999999999999965432 23 234689999999998
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++ .+|++++.||.|++|++.+
T Consensus 316 ~~~---------~~l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 316 VDD---------KYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp TTS---------CEEEEEETTSCEEEEEEEC
T ss_pred CCC---------CEEEEecCCCeEEEEEEeC
Confidence 764 4689999999999999853
No 34
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=281.76 Aligned_cols=307 Identities=13% Similarity=0.254 Sum_probs=223.5
Q ss_pred eccceeeec-ccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ce
Q 044557 7 VDHHCLTTL-KGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DK 80 (362)
Q Consensus 7 ~~~~~~~tl-~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~ 80 (362)
+..+++.+| ++|.+.|++++|+ +++|+||+.||+|++||+........ + .......|...|.++.+.+ +.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--~--~~~~~~~h~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV--Y--SSSLTYDCSSTVTQITMIPNFDA 125 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC--C--SCSEEEECSSCEEEEEECTTSSE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc--c--ceeeeccCCCCEEEEEEeCCCCE
Confidence 456788888 9999999999995 46999999999999999765111000 0 0011113577899999876 45
Q ss_pred eEEEecCCcEEEEecCC---CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee--ecCceeEEE--EecC
Q 044557 81 LFSAHQDHKIRVWKINN---QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH--HVDAVSALA--LTKD 153 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~--~~~~ 153 (362)
|++++.||+|++||+.. +... ....... + ....+.. +...+.++. ++++
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~-------------------i---~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEV--KFLNCEC-------------------I---RKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEE--EEEEEEE-------------------E---EEEEGGGGSSCCCEEEEEEEECSS
T ss_pred EEEEeCCCEEEEEEeccccCCcee--eccccce-------------------e---EEEEccCcccccCceEEEEEEcCC
Confidence 99999999999999852 1100 0000000 0 0000001 445677777 5689
Q ss_pred CCEEEEEECCCcEEEEECCCceEEEeeecc-CcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhh-ccc
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCLESITNA-HDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLE-RHN 230 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~h~ 230 (362)
+++|++|+.|+.|++||+++++++..+... |...|.+++|+|++. +++++.||.|++||+.++... ..+. .|.
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~ 257 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI----RSWSFGDH 257 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE----EEEBCTTC
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE----EEEecCCC
Confidence 999999999999999999999988887633 889999999999987 889999999999999875432 2222 577
Q ss_pred cceeEEEEe----cCCCEEEEEcCCCcEEEEeccCCCCcEEEEE---------------------eecC--ccceeEEEE
Q 044557 231 SGINALALS----CDGSVLYSGACDRSIIVWEKEEDDGNILVVG---------------------ALRG--HTKSILCMA 283 (362)
Q Consensus 231 ~~v~~i~~s----~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---------------------~~~~--h~~~v~~~~ 283 (362)
.+|.+++|+ |++.+|++|+.|+.|++||+.+..... .+. .+.+ |...|.+++
T Consensus 258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQY-AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEE-EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEE-EEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence 899999665 468899999999999999997643211 111 1122 677789999
Q ss_pred EeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecC-------------------------------------CCCcEEEEE
Q 044557 284 VVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEG-------------------------------------HRGPVKCLA 325 (362)
Q Consensus 284 ~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~-------------------------------------h~~~v~~~~ 325 (362)
++++ ++++++.|+.|++|+... .+++..+.+ |.+.|++++
T Consensus 337 ~~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~ 414 (437)
T 3gre_A 337 VSNDKILLTDEATSSIVMFSLNE--LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIS 414 (437)
T ss_dssp EETTEEEEEEGGGTEEEEEETTC--GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEE
T ss_pred ECCceEEEecCCCCeEEEEECCC--cccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEe
Confidence 9854 899999999999999643 233333433 899999999
Q ss_pred eeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 326 AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
++++. ...+|+||+.||.|+||+
T Consensus 415 ~~~~~-------~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 415 TCEVD-------ETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEESS-------SSEEEEEEETTSCEEEEC
T ss_pred eeccC-------CceEEEEEcCCceEEEeC
Confidence 98762 236899999999999995
No 35
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.2e-36 Score=277.34 Aligned_cols=280 Identities=29% Similarity=0.494 Sum_probs=230.2
Q ss_pred cceeeecccCccce-eeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecC
Q 044557 9 HHCLTTLKGHNSYV-SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQD 87 (362)
Q Consensus 9 ~~~~~tl~gH~~~V-~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~d 87 (362)
.+....|+||.+.| .++.+++++|++|+.||+|++||+.+... ... +..|.+.+.++.+.++.+++++.|
T Consensus 108 ~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~--~~~-------~~~h~~~v~~~~~~~~~l~s~~~d 178 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC--LRT-------LVGHTGGVWSSQMRDNIIISGSTD 178 (445)
T ss_dssp CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCE--EEE-------CCCCSSCEEEEEEETTEEEEEETT
T ss_pred cceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcE--EEE-------EcCCCCCEEEEEecCCEEEEEeCC
Confidence 34567899999874 78888999999999999999999875431 111 223567888898888899999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
|+|++||+..++. ...+..|...|.++.++ ++.+++|+.|+.|+
T Consensus 179 g~i~vwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~ 222 (445)
T 2ovr_B 179 RTLKVWNAETGEC----------------------------------IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLR 222 (445)
T ss_dssp SCEEEEETTTTEE----------------------------------EEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred CeEEEEECCcCcE----------------------------------EEEECCCCCcEEEEEec--CCEEEEEeCCCEEE
Confidence 9999999865421 11223578889999986 56899999999999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 247 (362)
+||+++++++..+. .|...|.++++ .+..+++++.||.|++||+.++. ....+..|..+|.++.| ++.++++
T Consensus 223 ~wd~~~~~~~~~~~-~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~ 294 (445)
T 2ovr_B 223 VWDIETGQCLHVLM-GHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETET----CLHTLQGHTNRVYSLQF--DGIHVVS 294 (445)
T ss_dssp EEESSSCCEEEEEE-CCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTE----EEEEECCCSSCEEEEEE--CSSEEEE
T ss_pred EEECCCCcEEEEEc-CCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCc----EeEEecCCCCceEEEEE--CCCEEEE
Confidence 99999998888775 79999999999 33459999999999999987754 33445678999999998 8899999
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecC---CCCcEEEE
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEG---HRGPVKCL 324 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~---h~~~v~~~ 324 (362)
++.|+.|++||+.+.+ .+..+.+|...+.++.+.++++++++.|+.|++|+.. ...++..+.+ |...|.++
T Consensus 295 ~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~v~~~ 368 (445)
T 2ovr_B 295 GSLDTSIRVWDVETGN----CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK--TGQCLQTLQGPNKHQSAVTCL 368 (445)
T ss_dssp EETTSCEEEEETTTCC----EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETT--TCCEEEEECSTTSCSSCEEEE
T ss_pred EeCCCeEEEEECCCCC----EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECC--CCcEEEEEccCCCCCCCEEEE
Confidence 9999999999998644 3456788999999999999999999999999999964 3456777776 89999999
Q ss_pred EeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 325 AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+|++ .+|++|+.||.|++||+..
T Consensus 369 ~~~~-----------~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 369 QFNK-----------NFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EECS-----------SEEEEEETTSEEEEEETTT
T ss_pred EECC-----------CEEEEEeCCCeEEEEECCC
Confidence 9842 3699999999999999864
No 36
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=271.76 Aligned_cols=294 Identities=14% Similarity=0.188 Sum_probs=223.1
Q ss_pred ceeeecccCccceeeeEec--C-cEEEEecC---CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc----
Q 044557 10 HCLTTLKGHNSYVSSLALA--G-KFLYTGSS---DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD---- 79 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~-~~l~t~s~---Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---- 79 (362)
...+.+++|.+.|.+++|+ + .++++|+. |++|++||+.+...... ....+...+.++.+.++
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~ 80 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--------REIEKAKPIKCGTFGATSLQQ 80 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--------EEEEESSCEEEEECTTCCTTT
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--------eeecccCcEEEEEEcCCCCCC
Confidence 3445678999999999995 4 46677776 99999999875431111 11235678889988764
Q ss_pred -eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEE------Eec
Q 044557 80 -KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALA------LTK 152 (362)
Q Consensus 80 -~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~ 152 (362)
.+++++.|+.|++|++...... ...+..|...|.++. |+|
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~---------------------------------~~~~~~~~~~v~~~~~~~~~~~s~ 127 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMP---------------------------------VYSVKGHKEIINAIDGIGGLGIGE 127 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSC---------------------------------SEEECCCSSCEEEEEEESGGGCC-
T ss_pred ceEEEecCCCeEEEEeCCCCCcc---------------------------------EEEEEecccceEEEeeccccccCC
Confidence 4999999999999998754310 012235788889985 468
Q ss_pred CCCEEEEEECCCcEEEEECCCce-EEEeeeccCc----ccEEEEE----EcCCCc-EEEEeCCCeEEEEeCCCCCCccee
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFK-CLESITNAHD----DAINAVA----LSDDGD-VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~h~----~~v~~v~----~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
++++|++++.|+.|++||+++++ .+..+. .|. ..+.+++ |+|++. +++++.||.|++||+.++...
T Consensus 128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--- 203 (357)
T 3i2n_A 128 GAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR--- 203 (357)
T ss_dssp CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE---
T ss_pred CccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee---
Confidence 99999999999999999999876 455443 333 3788888 677886 788999999999999876421
Q ss_pred ehhhhccccceeEEEEec---CCCEEEEEcCCCcEEEEeccCCCCcE-EEEEeecCccceeEEEEEeCC---eEEEeeCC
Q 044557 223 VDVLERHNSGINALALSC---DGSVLYSGACDRSIIVWEKEEDDGNI-LVVGALRGHTKSILCMAVVSD---LVCSGSAD 295 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~---~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D 295 (362)
....|..+|.+++|+| ++.+|++++.|+.|++||+....... .....+.+|...|.+++++++ ++++++.|
T Consensus 204 --~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 281 (357)
T 3i2n_A 204 --WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA 281 (357)
T ss_dssp --EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred --eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC
Confidence 2245788999999999 99999999999999999987543221 112245589999999999875 79999999
Q ss_pred CcEEEeeCCCC-----------------ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEE-ecCCCCcEEEEecc
Q 044557 296 KTIRIWRGIDR-----------------NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC-SGSLDCDIKVWQIS 357 (362)
Q Consensus 296 ~~i~~W~~~~~-----------------~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~s~D~~i~~W~~~ 357 (362)
+.|++|+.... ...++..+.+|...|.+++|+|++. +|+ ||+.|+.|++||+.
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR---------GLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST---------TEEEEEETTSEEEEEEEC
T ss_pred CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC---------eEEEEecCCCcEEEEECC
Confidence 99999996421 2256788999999999999987654 355 89999999999997
Q ss_pred cC
Q 044557 358 FP 359 (362)
Q Consensus 358 ~~ 359 (362)
..
T Consensus 353 ~~ 354 (357)
T 3i2n_A 353 KL 354 (357)
T ss_dssp C-
T ss_pred Cc
Confidence 54
No 37
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.4e-37 Score=273.55 Aligned_cols=251 Identities=24% Similarity=0.321 Sum_probs=193.7
Q ss_pred ecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEE
Q 044557 14 TLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIR 91 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~ 91 (362)
++.+|.+.|++++|+ +++||||+.|++||+||+.+... ..
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------~~ 49 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------IL 49 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE--------------------------------------EE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc--------------------------------------EE
Confidence 467999999999994 88999999999999999642100 00
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCEEEEEECCCcEEEE
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETLLYSVSWDRTIKIW 169 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iw 169 (362)
+ ..+.+|.+.|.+++|+| ++++|++|+.|++|++|
T Consensus 50 ~-------------------------------------------~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 50 I-------------------------------------------ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp E-------------------------------------------EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred E-------------------------------------------EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 0 01235888999999975 48999999999999999
Q ss_pred ECCCce--EEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC---
Q 044557 170 RTSDFK--CLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD--- 241 (362)
Q Consensus 170 d~~~~~--~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--- 241 (362)
|+++++ ....+ .+|...|.+++|+|+ +. +++++.||+|++||+..... ......+..|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 87 REENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-WEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-EEECCBTTSSSSCBCCCEECCCCCC
T ss_pred ECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-cceeeeeccccCCcceEEEccccCC
Confidence 998763 44444 479999999999997 54 88999999999999876431 1223455679999999999997
Q ss_pred --------------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC------CeEEEeeCCCcEEEe
Q 044557 242 --------------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS------DLVCSGSADKTIRIW 301 (362)
Q Consensus 242 --------------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~s~s~D~~i~~W 301 (362)
+++|++|+.|++|++||++.. ........+.+|...|.+++|++ .+|+++|.|++|++|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 478999999999999998643 22334567889999999999976 369999999999999
Q ss_pred eCCCCc--eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 302 RGIDRN--YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 302 ~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+..... ......+.+|...|++++|+|++ .+|++|+.|++|+||+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---------~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITA---------NILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTT---------CCEEEEESSSCEEEEEEC
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCC---------CEEEEEcCCCeEEEEEEC
Confidence 864311 11234567899999999998764 469999999999999975
No 38
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.2e-36 Score=277.60 Aligned_cols=281 Identities=27% Similarity=0.472 Sum_probs=223.2
Q ss_pred eeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEE
Q 044557 12 LTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIR 91 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~ 91 (362)
+....+|...|.++.++++++++|+.||+|++||+.+... . ..+..|.+.+.++.+.++.+++++.||+|+
T Consensus 126 ~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~--~-------~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~ 196 (435)
T 1p22_A 126 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC--K-------RILTGHTGSVLCLQYDERVIITGSSDSTVR 196 (435)
T ss_dssp EECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE--E-------EEECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred EecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE--E-------EEEcCCCCcEEEEEECCCEEEEEcCCCeEE
Confidence 3445678889999999999999999999999999875431 1 122345678889988888899999999999
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
+||+..+.. ...+..|...|.+++|++ .+|++|+.|+.|++||+
T Consensus 197 vwd~~~~~~----------------------------------~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~ 240 (435)
T 1p22_A 197 VWDVNTGEM----------------------------------LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDM 240 (435)
T ss_dssp EEESSSCCE----------------------------------EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEEC
T ss_pred EEECCCCcE----------------------------------EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeC
Confidence 999875431 112235788899999974 59999999999999999
Q ss_pred CCceEEE--eeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 172 SDFKCLE--SITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 172 ~~~~~~~--~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
++++... ....+|...|.++++ .+..+++++.||.|++||+.++.. ...+..|..+|.++.+ ++.++++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~g~ 313 (435)
T 1p22_A 241 ASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEF----VRTLNGHKRGIACLQY--RDRLVVSGS 313 (435)
T ss_dssp SSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEE--ETTEEEEEE
T ss_pred CCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcE----EEEEcCCCCcEEEEEe--CCCEEEEEe
Confidence 8876442 334579999999999 334589999999999999987653 3345678999999988 578999999
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCc-------eeeeeEecCCCCcEE
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRN-------YTCLAVLEGHRGPVK 322 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~-------~~~~~~l~~h~~~v~ 322 (362)
.||.|++||+.++. .+..+.+|...|.++++.+.++++|+.||.|++|+..... ..++..+.+|.+.|.
T Consensus 314 ~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~ 389 (435)
T 1p22_A 314 SDNTIRLWDIECGA----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 389 (435)
T ss_dssp TTSCEEEEETTTCC----EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC
T ss_pred CCCeEEEEECCCCC----EEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeE
Confidence 99999999998643 3456788999999999988899999999999999953211 116788999999999
Q ss_pred EEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+++| ++ .+|++|+.||+|++||+..+
T Consensus 390 ~l~~--~~---------~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 390 RLQF--DE---------FQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp CEEE--CS---------SCEEECCSSSEEEEEC----
T ss_pred EEEe--CC---------CEEEEEeCCCEEEEEECCCC
Confidence 9998 22 35899999999999999644
No 39
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.3e-36 Score=267.32 Aligned_cols=249 Identities=24% Similarity=0.439 Sum_probs=201.5
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-ceeEEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-DKLFSA 84 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~l~s~ 84 (362)
+.+++.++.+|...|.+++|+ +++|++|+.|++|++|++.+....... ...+..|.+.+.++.+.+ +.++++
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~l~s~ 160 (340)
T 1got_B 86 TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV-----SRELAGHTGYLSCCRFLDDNQIVTS 160 (340)
T ss_dssp TCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE-----EEEEECCSSCEEEEEEEETTEEEEE
T ss_pred CCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee-----EEEecCCCccEEEEEECCCCcEEEE
Confidence 355777889999999999994 789999999999999998764321110 112234566777777654 469999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|++|++||++.+.. ...+.+|.+.|.+++|+|++++|++|+.|+
T Consensus 161 s~d~~i~~wd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~ 206 (340)
T 1got_B 161 SGDTTCALWDIETGQQ----------------------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp ETTSCEEEEETTTTEE----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCcEEEEECCCCcE----------------------------------EEEEcCCCCceEEEEECCCCCEEEEEeCCC
Confidence 9999999999865321 112346888999999999999999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
.|++||+++++++..+. +|...|.+++|+|++. +++++.||+|++||+.++.....+ ....+..+|++++|+|+|+
T Consensus 207 ~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 207 SAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY--SHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp CEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCTTCCSCEEEEEECTTSS
T ss_pred cEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE--ccCCcccceEEEEECCCCC
Confidence 99999999998888775 7999999999999987 889999999999999875432221 1123445799999999999
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
+|++|+.|+.|++||..... ....+.+|...|.+++|+++ +++|||.|++|++|+
T Consensus 284 ~l~~g~~d~~i~vwd~~~~~----~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLAGYDDFNCNVWDALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCeEEEEEcccCc----EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999987643 34567899999999999865 899999999999996
No 40
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=267.98 Aligned_cols=242 Identities=16% Similarity=0.154 Sum_probs=190.9
Q ss_pred ccCccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEE
Q 044557 16 KGHNSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRV 92 (362)
Q Consensus 16 ~gH~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~ 92 (362)
..|.+.|.+++|+ .+.|++|+.||+|||||+++........ .....|...|.++.+.++ .|++++.|++|++
T Consensus 79 ~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~-----~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 79 VQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSK-----FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp EEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEE-----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEee-----ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3467789999996 4689999999999999987644221111 122346778999998765 5999999999999
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEEC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~ 171 (362)
||++.+.. ..++.+|.+.|.+++|+|++ .+|++|+.|++|++||+
T Consensus 154 wd~~~~~~----------------------------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 154 WDLAQQVV----------------------------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp EETTTTEE----------------------------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EECCCCcE----------------------------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence 99875421 12334689999999999988 48899999999999999
Q ss_pred CCceEEEeee-ccCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC-CEEEE
Q 044557 172 SDFKCLESIT-NAHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG-SVLYS 247 (362)
Q Consensus 172 ~~~~~~~~~~-~~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s 247 (362)
+++++...+. ..|...+.+++|+|++ . +++|+.||+|++||+.+++.. ..+.+|...|++++|+|++ ++|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~~~~h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LSSAVHSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EEEECCSSCEEEEEECSSSSCCEEE
T ss_pred cccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EEEcCCCCCEEEEEEccCCCeEEEE
Confidence 9988777654 2455678999999865 4 678999999999999877543 3456799999999999998 57999
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCC
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~ 305 (362)
|+.|++|++||+..++ +..+.+|.+.|.+++|+++ +++|+|.|++|++|++..
T Consensus 276 gs~D~~i~vwd~~~~~-----~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 276 LSEDCSLAVLDSSLSE-----LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EETTSCEEEECTTCCE-----EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EeCCCeEEEEECCCCc-----EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999999999987532 2346899999999999853 688999999999999643
No 41
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3e-35 Score=273.17 Aligned_cols=284 Identities=24% Similarity=0.454 Sum_probs=232.0
Q ss_pred ccceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecC
Q 044557 8 DHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQD 87 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~d 87 (362)
..+++.++.+|.+.|.++.++++++++|+.||+|++||+.+... .. .+..|...+.++.+.++.+++++.|
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~-------~~~~h~~~v~~~~~~~~~l~s~s~d 218 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGEC--IH-------TLYGHTSTVRCMHLHEKRVVSGSRD 218 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE--EE-------EECCCSSCEEEEEEETTEEEEEETT
T ss_pred CCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcE--EE-------EECCCCCcEEEEEecCCEEEEEeCC
Confidence 45688899999999999999999999999999999999876421 11 1223566788888888899999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
|+|++||+..+.. ...+..|...|.++++ +++++++|+.|+.|+
T Consensus 219 g~i~~wd~~~~~~----------------------------------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 219 ATLRVWDIETGQC----------------------------------LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVK 262 (445)
T ss_dssp SEEEEEESSSCCE----------------------------------EEEEECCSSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred CEEEEEECCCCcE----------------------------------EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEE
Confidence 9999999875431 1122357888999988 688999999999999
Q ss_pred EEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE
Q 044557 168 IWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS 247 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s 247 (362)
+||+++++++..+. .|...|.+++| .+..+++++.||.|++||+.++.. ...+..|...+.++.+ ++.+|++
T Consensus 263 iwd~~~~~~~~~~~-~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~--~~~~l~~ 334 (445)
T 2ovr_B 263 VWDPETETCLHTLQ-GHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNC----IHTLTGHQSLTSGMEL--KDNILVS 334 (445)
T ss_dssp EEEGGGTEEEEEEC-CCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCE----EEEECCCCSCEEEEEE--ETTEEEE
T ss_pred EEECCCCcEeEEec-CCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCE----EEEEcCCcccEEEEEE--eCCEEEE
Confidence 99999999888775 78999999999 334589999999999999987653 3344578888887776 5679999
Q ss_pred EcCCCcEEEEeccCCCCcEEEEEeecC---ccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEe-----cCCCC
Q 044557 248 GACDRSIIVWEKEEDDGNILVVGALRG---HTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVL-----EGHRG 319 (362)
Q Consensus 248 ~~~d~~i~~wd~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l-----~~h~~ 319 (362)
|+.||.|++||+.+++ .+..+.+ |...|.+++++++++++++.||.|++|+... .+.+..+ .+|..
T Consensus 335 ~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQ----CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT--GEFIRNLVTLESGGSGG 408 (445)
T ss_dssp EETTSCEEEEETTTCC----EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT--CCEEEEEEECTTGGGTC
T ss_pred EeCCCeEEEEECCCCc----EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC--CceeeeeeccccCCCCc
Confidence 9999999999997643 2334444 8889999999999999999999999999643 4456666 58899
Q ss_pred cEEEEEeeecCCccCCCCCceEEEecCCCCc----EEEEecccC
Q 044557 320 PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD----IKVWQISFP 359 (362)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~----i~~W~~~~~ 359 (362)
.|++++|+|+ +.+|++|+.||+ |.+||+...
T Consensus 409 ~v~~~~~s~~---------~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 409 VVWRIRASNT---------KLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEECSS---------EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eEEEEEecCC---------EEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999765 467999999998 999999754
No 42
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.8e-35 Score=274.66 Aligned_cols=282 Identities=23% Similarity=0.372 Sum_probs=223.0
Q ss_pred eeeecccCccce-eeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCC
Q 044557 11 CLTTLKGHNSYV-SSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDH 88 (362)
Q Consensus 11 ~~~tl~gH~~~V-~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg 88 (362)
+..+|++|.+.| .++.+++++|+||+.||+|++||+.+.. ... .+..|.+.|.++.+.++ .+++++.||
T Consensus 113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~--~~~-------~~~~h~~~V~~l~~~~~~~l~s~s~dg 183 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKK--FLL-------QLSGHDGGVWALKYAHGGILVSGSTDR 183 (464)
T ss_dssp EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTE--EEE-------EECCCSSCEEEEEECSTTEEEEEETTS
T ss_pred ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCc--EEE-------EEeCCCcCEEEEEEcCCCEEEEEeCCC
Confidence 456899999885 7888899999999999999999986532 111 12346778999988765 699999999
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe--cCCCEEEEEECCCcE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT--KDETLLYSVSWDRTI 166 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~d~~i 166 (362)
+|++||++.+.. ...+.+|.+.|.+++++ +++++|++|+.|+.|
T Consensus 184 ~i~vwd~~~~~~----------------------------------~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 184 TVRVWDIKKGCC----------------------------------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp CEEEEETTTTEE----------------------------------EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred CEEEEECCCCcE----------------------------------EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 999999875421 11233588899999998 577899999999999
Q ss_pred EEEECCCceEE----------------------EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee
Q 044557 167 KIWRTSDFKCL----------------------ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 167 ~iwd~~~~~~~----------------------~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
++||+++.... .....+|...+.++ ++++. +++++.||.|++||+.++. ..
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~----~~ 303 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK----CL 303 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE----EE
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc----EE
Confidence 99999876532 12234688888777 45554 8899999999999998754 33
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeC
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
..+..|..+|.+++|+|++.+|++|+.|+.|++||+.+++ .+..+.+|...|.++.+++.++++++.|+.|++|+.
T Consensus 304 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~ 379 (464)
T 3v7d_B 304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDA 379 (464)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEEC
Confidence 4456799999999999999999999999999999997643 455678999999999999999999999999999997
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
... .....+ .|...+..++|++++ .+|++|+ |+.|++||+..
T Consensus 380 ~~~--~~~~~~-~~~~~~~~~~~~~~~---------~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 380 NDY--SRKFSY-HHTNLSAITTFYVSD---------NILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp TTC--CEEEEE-ECTTCCCEEEEEECS---------SEEEEEE-TTEEEEEETTT
T ss_pred CCC--ceeeee-cCCCCccEEEEEeCC---------CEEEEec-CCeEEEEECCC
Confidence 542 222223 366677778888764 4688887 89999999864
No 43
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=265.41 Aligned_cols=247 Identities=24% Similarity=0.381 Sum_probs=198.6
Q ss_pred ecc-eeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC
Q 044557 67 GKG-AVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD 143 (362)
Q Consensus 67 ~~~-~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 143 (362)
|.. .+.++.+.++ .|++++.|++|++|++...... . ......+|..
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~-----~--------------------------~~~~~~~h~~ 62 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI-----C--------------------------KSVLSEGHQR 62 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE-----E--------------------------EEEECSSCSS
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce-----e--------------------------eeeeccccCC
Confidence 444 6778888765 5999999999999998643200 0 0001135889
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCce--EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFK--CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.|.+++|+|++++|++|+.|+.|++|++.... ++..+ .+|...|.+++|+|++. +++++.|++|++||+..+.. .
T Consensus 63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-~ 140 (345)
T 3fm0_A 63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-Y 140 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-E
T ss_pred cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-e
Confidence 99999999999999999999999999987653 45555 47999999999999997 88999999999999976542 2
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i 298 (362)
.....+..|...|.+++|+|++.+|++|+.|++|++||.... .......+.+|...|.+++|+++ +|++++.|++|
T Consensus 141 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~--~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v 218 (345)
T 3fm0_A 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED--DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218 (345)
T ss_dssp EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC--CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeE
Confidence 334556789999999999999999999999999999998753 23345678899999999999865 89999999999
Q ss_pred EEeeCCC-------------CceeeeeEecC-CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 299 RIWRGID-------------RNYTCLAVLEG-HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 299 ~~W~~~~-------------~~~~~~~~l~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++|+... ....++..+.+ |...|.+++|+|++ .+|++++.|+.|++|+..
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---------~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT---------GALATACGDDAIRVFQED 282 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT---------CCEEEEETTSCEEEEEEC
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC---------CEEEEEeCCCeEEEEEeC
Confidence 9998421 22355667776 99999999998764 358999999999999975
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.3e-36 Score=281.77 Aligned_cols=291 Identities=16% Similarity=0.166 Sum_probs=209.9
Q ss_pred cceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeE
Q 044557 9 HHCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLF 82 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~ 82 (362)
.+...+..+|...|++|+|+ +++||+|+.||+|+|||+.+........ ...|.+.|.++.+.+ +.|+
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-------~~gH~~~V~~l~f~p~~~~~l~ 181 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-------GIGAGGSITGLKFNPLNTNQFY 181 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-------CCSSSCCCCEEEECSSCTTEEE
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-------ccCCCCCEEEEEEeCCCCCEEE
Confidence 34556678899999999995 4689999999999999987543211111 123567899999864 4699
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.||+|++||++.... ..... ...+...+.+++|+|++++|++|+.
T Consensus 182 s~s~D~~v~iwd~~~~~~--------~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~~g~~ 229 (435)
T 4e54_B 182 ASSMEGTTRLQDFKGNIL--------RVFAS------------------------SDTINIWFCSLDVSASSRMVVTGDN 229 (435)
T ss_dssp EECSSSCEEEEETTSCEE--------EEEEC------------------------CSSCSCCCCCEEEETTTTEEEEECS
T ss_pred EEeCCCEEEEeeccCCce--------eEEec------------------------cCCCCccEEEEEECCCCCEEEEEeC
Confidence 999999999999864210 00000 0012345788999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
||.|++||++.. .+..+ ..|...|.+++|+|++. +++++.|+.|++||+.+......+ .....|..+|++++|+|
T Consensus 230 dg~i~~wd~~~~-~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~sp 306 (435)
T 4e54_B 230 VGNVILLNMDGK-ELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-LYSLPHRHPVNAACFSP 306 (435)
T ss_dssp SSBEEEEESSSC-BCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-SBCCBCSSCEEECCBCT
T ss_pred CCcEeeeccCcc-eeEEE-ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-EEeeeccccccceeECC
Confidence 999999998754 44444 37999999999999875 678999999999999876544332 23356899999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce------eEEEEEeC--CeEE------------EeeCCCcEEE
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS------ILCMAVVS--DLVC------------SGSADKTIRI 300 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~------v~~~~~~~--~~~~------------s~s~D~~i~~ 300 (362)
+|.+|++++.|+.|++||+.+.+.... +..|... +....+.+ .+++ ++..++.|++
T Consensus 307 dg~~l~s~~~D~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~i 382 (435)
T 4e54_B 307 DGARLLTTDQKSEIRVYSASQWDCPLG----LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDV 382 (435)
T ss_dssp TSSEEEEEESSSCEEEEESSSSSSEEE----ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEE
T ss_pred CCCeeEEEcCCCEEEEEECCCCccceE----EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEE
Confidence 999999999999999999987543222 2222211 11122222 2233 3335578999
Q ss_pred eeCCCCceeeeeEe-cCCCCcEEEE-EeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 301 WRGIDRNYTCLAVL-EGHRGPVKCL-AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 301 W~~~~~~~~~~~~l-~~h~~~v~~~-~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|+... +.++..+ .+|...|.++ +|+|++ .+|++|+ |++|+||++.
T Consensus 383 wd~~~--g~~~~~l~~~~~~~v~s~~~fspdg---------~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 383 FDGNS--GKMMCQLYDPESSGISSLNEFNPMG---------DTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp ECSSS--CCEEEEECCSSCCCCCCEEEECTTS---------SCEEEEC-SSEEEECCCC
T ss_pred EECCC--CcEEEEEeCCCCCcEEEEEEECCCC---------CEEEEEc-CCcEEEEECC
Confidence 99643 4556655 4788899887 587654 4688886 7899999985
No 45
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-35 Score=264.09 Aligned_cols=285 Identities=16% Similarity=0.229 Sum_probs=225.7
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
....+|.+|.+.|++++|+ +++|++|+.||.|++||+.+... .. .+..|...+.++.+.++ .|++++
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~-------~~~~h~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER--LG-------TLDGHTGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE--EE-------EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh--hh-------hhhhcCCcEEEEEEcCCCCEEEEEe
Confidence 3556799999999999994 78999999999999999875321 11 12235678888888754 699999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC--
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD-- 163 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-- 163 (362)
.|++|++||+..+... ....|...+.+++|+|++++|++++.+
T Consensus 94 ~dg~i~iwd~~~~~~~-----------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 138 (369)
T 3zwl_B 94 ADYSIKLWDVSNGQCV-----------------------------------ATWKSPVPVKRVEFSPCGNYFLAILDNVM 138 (369)
T ss_dssp TTTEEEEEETTTCCEE-----------------------------------EEEECSSCEEEEEECTTSSEEEEEECCBT
T ss_pred CCCeEEEEECCCCcEE-----------------------------------EEeecCCCeEEEEEccCCCEEEEecCCcc
Confidence 9999999998754310 011256789999999999999999999
Q ss_pred ---CcEEEEECCCceE-----------EEeeeccCcc--cEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 164 ---RTIKIWRTSDFKC-----------LESITNAHDD--AINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 164 ---~~i~iwd~~~~~~-----------~~~~~~~h~~--~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+.|++||+..... +..+ ..|.. .+.+++|+|++. +++++.||.|++||+.+.. .....+
T Consensus 139 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~ 214 (369)
T 3zwl_B 139 KNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY---EYVDSI 214 (369)
T ss_dssp TBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT---EEEEEE
T ss_pred CCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc---EeEEEE
Confidence 9999999865431 1122 23444 899999999987 8889999999999997632 234455
Q ss_pred hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCC--------
Q 044557 227 ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADK-------- 296 (362)
Q Consensus 227 ~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~-------- 296 (362)
..|..+|.+++|+|++.+|++++.|+.|++||+.+... ...+. +...+.++.++++ ++++++.++
T Consensus 215 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 215 DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV----LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTS 289 (369)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEE-CSSCEEEEEECSSSSEEEEEECCC--------
T ss_pred ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce----eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEe
Confidence 67899999999999999999999999999999986442 22233 6677888888754 888988888
Q ss_pred ------cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 297 ------TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 297 ------~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+++|+.. ...++..+.+|...|.+++|+|++ .+|++|+.||.|++|++..
T Consensus 290 ~~~~~~~i~~~d~~--~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 290 ANEGKFEARFYHKI--FEEEIGRVQGHFGPLNTVAISPQG---------TSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -----CEEEEEETT--TCCEEEEEECCSSCEEEEEECTTS---------SEEEEEETTSEEEEEEECH
T ss_pred cCCCcceeEEEecC--CCcchhheecccCcEEEEEECCCC---------CEEEEEcCCCeEEEEECcc
Confidence 89999954 356678899999999999998754 4799999999999999864
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=285.14 Aligned_cols=294 Identities=10% Similarity=0.066 Sum_probs=204.7
Q ss_pred eecccCccceeeeEecC--------cEEEEecCCCeEEEeecCCCCcccceee--eccceeEEeecceeEEEEEcC-cee
Q 044557 13 TTLKGHNSYVSSLALAG--------KFLYTGSSDNEVRSWDCNTFSSELDQEF--LSNNNIVAVGKGAVKSLVVLA-DKL 81 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~~--------~~l~t~s~Dg~i~vWd~~~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~~~-~~l 81 (362)
.++.+|.+.|.+|+|.. .+||||+.||+||+||+........... ......+..|...+.++.+.+ +.|
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l 280 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV 280 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE
Confidence 45778999999999953 5999999999999999875421100000 001122344567889998864 469
Q ss_pred EEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEE--EEecCC-CEEE
Q 044557 82 FSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSAL--ALTKDE-TLLY 158 (362)
Q Consensus 82 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~l~ 158 (362)
++|+.||+|++||++..... ...+..|...|.++ +|+|++ .+||
T Consensus 281 asgs~DgtV~lWD~~~~~~~---------------------------------~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVP---------------------------------SFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp EEEETTSEEEEEETTBCSSC---------------------------------SEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred EEEeCCCEEEEEECCCCCCc---------------------------------eEEeecccccEEEEEEEcCCCCCeEEE
Confidence 99999999999998743210 01224688999999 568887 8999
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCc--ccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHD--DAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~--~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
|||.|++|+|||+++++++..+. +|. ..|.+++|+|++. +++++.|++|++||+.++.... .+.+|..+|++
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~----~l~gH~~~V~s 402 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH----PLVSRETTITA 402 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE----EEEECSSCEEE
T ss_pred EeccCCeEEEEECCCCCcccccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce----eeecCCCceEE
Confidence 99999999999999877655543 343 2578999999886 7889999999999998765332 34579999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-----ccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCcee
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-----HTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
++|+|+|.+|++|+.|++|++||..... +..++. +...+.+++|+++ -++.... .+++|... .+..
T Consensus 403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-----~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~--~~~~~~~~-~~g~ 474 (524)
T 2j04_B 403 IGVSRLHPMVLAGSADGSLIITNAARRL-----LHGIKNSSATQKSLRLWKWDYSIKDDKYRIDS--SYEVYPLT-VNDV 474 (524)
T ss_dssp EECCSSCCBCEEEETTTEEECCBSCSST-----TTCC------CCCCEEEECBCCSSSCEEEECC--CCCCCC-------
T ss_pred EEeCCCCCeEEEEECCCEEEEEechHhh-----ccccccCccceeeeEEEEeccCCCCCeEEccC--Cceecccc-cCCc
Confidence 9999999999999999999999975421 011110 1124567777654 2222222 23334321 1345
Q ss_pred eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 310 ~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++..+.+|...|.+++|+|++. .+.+||+|+.||+||||++..
T Consensus 475 ~~~~l~gh~~~V~~Vafsp~~~------~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 475 SKAKIDAHGINITCTKWNETSA------GGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -------CCCSCCCEEECCSTT------TTTEEEEECTTSEEEEEECSC
T ss_pred ceeeecCCCceEEEEECCCCCC------ccHHHHhhccCceEEEEEccc
Confidence 6788999999999999998753 235799999999999999864
No 47
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=264.92 Aligned_cols=304 Identities=19% Similarity=0.293 Sum_probs=224.2
Q ss_pred ccceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeecc----ceeEEeecceeEEEEEcC-c
Q 044557 8 DHHCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSN----NNIVAVGKGAVKSLVVLA-D 79 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~----~~~~~~~~~~v~~i~~~~-~ 79 (362)
..+....+++|.+.|.+++|+ +++|++|+.||+|++||+.+............ ......+...+.++.+.+ +
T Consensus 32 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 32 LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp ECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred cCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence 345677889999999999994 57999999999999999876442221110000 000012567889998876 3
Q ss_pred --eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC---C
Q 044557 80 --KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD---E 154 (362)
Q Consensus 80 --~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~ 154 (362)
.+++++.|+.|++|++...... ....+...+.++.++|. +
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~ 156 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTA-----------------------------------DVFNFEETVYSHHMSPVSTKH 156 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEE-----------------------------------EEEECSSCEEEEEECSSCSSC
T ss_pred CcEEEEEeCCCeEEEeeCCCCccc-----------------------------------eeccCCCceeeeEeecCCCCC
Confidence 5999999999999998753210 01235567788888874 4
Q ss_pred CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcce-----------
Q 044557 155 TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHS----------- 221 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~----------- 221 (362)
.++++++.|+.|++||+++++.+..+. .|...|.+++|+|++. +++++.||.|++||+........
T Consensus 157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 157 CLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp CEEEEEESSSSEEEEESSSSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred cEEEEEcCCCeEEEEeCCCcceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 599999999999999999988877765 7899999999999986 77999999999999976542111
Q ss_pred -eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-cccee-EEEEE-eCCeEEEeeCCCc
Q 044557 222 -LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSI-LCMAV-VSDLVCSGSADKT 297 (362)
Q Consensus 222 -~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v-~~~~~-~~~~~~s~s~D~~ 297 (362)
.......|..+|.+++|+|++.+|++++.|+.|++||+.+............. ....+ ..... ....++.++.|+.
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST 315 (408)
T ss_dssp CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTE
T ss_pred eeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCE
Confidence 11223568899999999999999999999999999999865432111100000 01111 11112 2346788889999
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++|+.. ...++..+.+|...|.+++|+|++ .+|++|+.||.|++||+..
T Consensus 316 i~v~d~~--~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 316 IAVYTVY--SGEQITMLKGHYKTVDCCVFQSNF---------QELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp EEEEETT--TCCEEEEECCCSSCEEEEEEETTT---------TEEEEEETTSCEEEEEECC
T ss_pred EEEEECc--CCcceeeeccCCCeEEEEEEcCCC---------CEEEEECCCCeEEEEeCCC
Confidence 9999964 456788999999999999998764 4699999999999999964
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-35 Score=267.72 Aligned_cols=293 Identities=17% Similarity=0.220 Sum_probs=226.7
Q ss_pred ceeeeccc--CccceeeeEec--Cc-EEEEecCCCeEEEeec----CCCCcc----cceeeec---cceeEEeecceeEE
Q 044557 10 HCLTTLKG--HNSYVSSLALA--GK-FLYTGSSDNEVRSWDC----NTFSSE----LDQEFLS---NNNIVAVGKGAVKS 73 (362)
Q Consensus 10 ~~~~tl~g--H~~~V~~l~~~--~~-~l~t~s~Dg~i~vWd~----~~~~~~----~~~~~~~---~~~~~~~~~~~v~~ 73 (362)
++..++.. |.+.|.+++|+ ++ +|++|+.||+|++||+ .+.... ....+.. .......+...+.+
T Consensus 34 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 34 GFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC 113 (425)
T ss_dssp CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE
T ss_pred hhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEE
Confidence 34555655 55999999995 66 9999999999999998 553310 0000100 00001114558899
Q ss_pred EEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe
Q 044557 74 LVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT 151 (362)
Q Consensus 74 i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 151 (362)
+.+.++ .|++++.||.|++|+... .. ...+..|...|.+++|+
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~~~~-~~----------------------------------~~~~~~~~~~v~~~~~~ 158 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWNKTG-AL----------------------------------LNVLNFHRAPIVSVKWN 158 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTS-CE----------------------------------EEEECCCCSCEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCC-Ce----------------------------------eeeccCCCccEEEEEEC
Confidence 988765 599999999999998321 10 11223578899999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCceEEEeeeccCccc---------------EEEEEEcCCCcEEEEeCCCeEEEEeCCCC
Q 044557 152 KDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDA---------------INAVALSDDGDVYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 152 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~---------------v~~v~~~~~~~~~s~~~dg~i~iw~~~~~ 216 (362)
|++++|++++.|+.|++||+.+++.+..+. .+... +.+++|+|++.+++++.||.|++||+.++
T Consensus 159 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 237 (425)
T 1r5m_A 159 KDGTHIISMDVENVTILWNVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK 237 (425)
T ss_dssp TTSSEEEEEETTCCEEEEETTTTEEEEEEC-CC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS
T ss_pred CCCCEEEEEecCCeEEEEECCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC
Confidence 999999999999999999999998877765 44444 88999999999999999999999999876
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCC
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSAD 295 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D 295 (362)
... ..+..|..+|.+++|+|++.+|++++.|+.|++||+...+. ...+.+|...|.++.++++ ++++++.|
T Consensus 238 ~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~l~~~~~d 309 (425)
T 1r5m_A 238 TPT----GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS----QNCFYGHSQSIVSASWVGDDKVISCSMD 309 (425)
T ss_dssp SCS----EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC----SEEECCCSSCEEEEEEETTTEEEEEETT
T ss_pred cee----eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc----ceEecCCCccEEEEEECCCCEEEEEeCC
Confidence 433 23457889999999999999999999999999999986543 2345678999999999876 99999999
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+.|++|+.. ...++..+.+|...|.+++|+|++ .+|++|+.||.|++||+.
T Consensus 310 ~~i~i~d~~--~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 310 GSVRLWSLK--QNTLLALSIVDGVPIFAGRISQDG---------QKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp SEEEEEETT--TTEEEEEEECTTCCEEEEEECTTS---------SEEEEEETTSCEEEEECH
T ss_pred CcEEEEECC--CCcEeEecccCCccEEEEEEcCCC---------CEEEEEECCCeEEEEECC
Confidence 999999964 356788889999999999998754 469999999999999985
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=270.55 Aligned_cols=296 Identities=17% Similarity=0.220 Sum_probs=224.6
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc---eeEEEecCCcEE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD---KLFSAHQDHKIR 91 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~l~s~~~dg~i~ 91 (362)
+|...|.+++|+ +++|++|+.||+|++||+......... ...+..|...+.++.+.++ .+++++.|++|+
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS-----MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE-----EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccc-----hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 589999999994 789999999999999998752211100 1112235678889988754 599999999999
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEECCCcEEEEE
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd 170 (362)
+||+............. .......|...|.+++|+|+ +.+|++++.|+.|++||
T Consensus 140 iwd~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPL-------------------------TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp BCBTTTTSSCTTTCCCB-------------------------CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred EEECCCCcccccccccc-------------------------ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 99997654111000000 00011257788999999999 78999999999999999
Q ss_pred CCCceEEEeeeccC-----cccEEEEEEcCCC-c-EEEEeCCC---eEEEEeCCCCCCcceeehhhh-ccccceeEEEEe
Q 044557 171 TSDFKCLESITNAH-----DDAINAVALSDDG-D-VYTGSADK---KIKVWRRSPGNKKHSLVDVLE-RHNSGINALALS 239 (362)
Q Consensus 171 ~~~~~~~~~~~~~h-----~~~v~~v~~~~~~-~-~~s~~~dg---~i~iw~~~~~~~~~~~~~~~~-~h~~~v~~i~~s 239 (362)
+++++.+..+...+ ...|.+++|+|++ . +++++.|+ .|++||+.++.. ....+. .|...|.+++|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT---PLQTLNQGHQKGILSLDWC 271 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS---CSBCCCSCCSSCEEEEEEC
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC---CcEEeecCccCceeEEEeC
Confidence 99998887765322 7889999999997 3 78899998 999999987532 223445 789999999999
Q ss_pred c-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEeeCCCcEEEeeCCCCceeee----
Q 044557 240 C-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGSADKTIRIWRGIDRNYTCL---- 311 (362)
Q Consensus 240 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s~D~~i~~W~~~~~~~~~~---- 311 (362)
| ++.+|++++.|+.|++||+.+.+ .+..+.+|...|.+++|++ .++++++.|+.|++|+.........
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 347 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAE----QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQET 347 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCC----EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCc----cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccc
Confidence 9 99999999999999999998643 3456778999999999986 4899999999999999643221100
Q ss_pred -----------------------------eEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 312 -----------------------------AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 312 -----------------------------~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.....|...+.+++|+|+ +++|++|+.|++|+||++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---------g~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 348 ETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG---------GKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp -------------------CCSCCCSSCCCCCSTTCCCSCCCEEETT---------TEEECBCTTSSCBCCBCCCC
T ss_pred cccccCCcccccccccccccccccccccccCCccccCCccceEEeeC---------CeEEEEeCCCCeEEEEEecc
Confidence 001126777778888765 46899999999999999864
No 50
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=261.55 Aligned_cols=255 Identities=20% Similarity=0.309 Sum_probs=204.7
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecC
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQD 87 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~d 87 (362)
+++.+|++|.+.|++++|+ +++|++|+.||+|++||+......
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~----------------------------------- 46 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK----------------------------------- 46 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-----------------------------------
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-----------------------------------
Confidence 5678899999999999995 789999999999999986421000
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC--CCEEEEEECCCc
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDRT 165 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~ 165 (362)
.+ ..+..|...|.+++|+|+ +++|++|+.|+.
T Consensus 47 -~~---------------------------------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 47 -LI---------------------------------------------DTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp -EE---------------------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred -ee---------------------------------------------eEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 00 011247788999999877 899999999999
Q ss_pred EEEEECCCce--EEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 166 IKIWRTSDFK--CLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 166 i~iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
|++||+.+++ .+..+ ..|...|.+++|+|+ +. +++++.||.|++||+........ ..+..|..+|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--IIIDAHAIGVNSASWAP 157 (379)
T ss_dssp EEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE--EEEECCTTCEEEEEECC
T ss_pred EEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee--EEecCCCCceEEEEEcC
Confidence 9999999886 44444 468899999999998 65 88999999999999987643322 23457899999999999
Q ss_pred -------------CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-----eEEEeeCCCcEEEee
Q 044557 241 -------------DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-----LVCSGSADKTIRIWR 302 (362)
Q Consensus 241 -------------~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~s~s~D~~i~~W~ 302 (362)
++.+|++++.|+.|++||++...........+.+|...|.+++|+++ ++++++.|+.|++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 69999999999999999998766655666778899999999999754 799999999999999
Q ss_pred CCCCc---eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GIDRN---YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~~~---~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..... ...+....+|...|++++|+|++ .+|++++.||.|++|++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSS---------CCEEEEESSSSEEEEEEE
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCC---------CEEEEecCCCcEEEEeCC
Confidence 75432 22233345699999999998765 358899999999999986
No 51
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=250.38 Aligned_cols=293 Identities=18% Similarity=0.270 Sum_probs=214.3
Q ss_pred ceeccceeeecc--cCcc--ceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc
Q 044557 5 SVVDHHCLTTLK--GHNS--YVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD 79 (362)
Q Consensus 5 ~~~~~~~~~tl~--gH~~--~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (362)
++.+..+.++|. +..+ .+..|+|+ +++||+ +.|++|||||+++.... ..+. ...|...|.++.+.++
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAv-g~D~tV~iWd~~tg~~~--~~~~-----~~~~~~~V~~v~~~~~ 78 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAV-ALDNSVYLWSASSGDIL--QLLQ-----MEQPGEYISSVAWIKE 78 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEE-EETTEEEEEETTTCCEE--EEEE-----CCSTTCCEEEEEECTT
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCCEEEE-EeCCEEEEEECCCCCEE--EEEE-----ecCCCCeEEEEEECCC
Confidence 344455555664 2332 35778996 445555 56999999998764321 1111 0123457889988764
Q ss_pred --eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 80 --KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 80 --~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
.+++|+.|++|++|+++.++. ...+.+|...+.++ ++++..+
T Consensus 79 ~~~l~sgs~Dg~v~iw~~~~~~~----------------------------------~~~~~~h~~~~~~~--~~~~~~l 122 (318)
T 4ggc_A 79 GNYLAVGTSSAEVQLWDVQQQKR----------------------------------LRNMTSHSARVGSL--SWNSYIL 122 (318)
T ss_dssp SSEEEEEETTSEEEEEETTTTEE----------------------------------EEEEECCSSCEEEE--EEETTEE
T ss_pred CCEEEEEECCCcEEEeecCCcee----------------------------------EEEecCccceEEEe--ecCCCEE
Confidence 599999999999999875431 11223566666655 4556799
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
++++.++.+++|+............+|...+..+++++++. +++++.||.|++||+.+++...........|...|.++
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 202 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEE
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEE
Confidence 99999999999998876544334458999999999999987 88999999999999988765444444555678899999
Q ss_pred EEecCCCEE---EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEE--EeeCCCcEEEeeCCCCcee
Q 044557 237 ALSCDGSVL---YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVC--SGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 237 ~~s~~~~~l---~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~--s~s~D~~i~~W~~~~~~~~ 309 (362)
.++|++..+ ++++.+++|++||....... ....+...+..+.+.+. .++ +++.|+.|++|+.. +.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~--~~~ 275 (318)
T 4ggc_A 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMA 275 (318)
T ss_dssp EECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT--TCC
T ss_pred EecCCCCcEEEEEecCCCCEEEEEeccccccc-----ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC--CCc
Confidence 999977643 47788999999998764321 12335666778887653 444 45689999999964 467
Q ss_pred eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 310 ~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+++++.||.+.|++++|+|++ .+|+|||.||+|||||+.
T Consensus 276 ~~~~l~gH~~~V~~l~~spdg---------~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 276 KVAELKGHTSRVLSLTMSPDG---------ATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEEECCCSSCEEEEEECTTS---------SCEEEEETTTEEEEECCS
T ss_pred EEEEEcCCCCCEEEEEEcCCC---------CEEEEEecCCeEEEEECC
Confidence 789999999999999998764 469999999999999984
No 52
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-35 Score=268.93 Aligned_cols=292 Identities=15% Similarity=0.205 Sum_probs=222.9
Q ss_pred CccceeeeEec--Cc-EEEEe----------cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 18 HNSYVSSLALA--GK-FLYTG----------SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 18 H~~~V~~l~~~--~~-~l~t~----------s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
+...|.+++|+ ++ +|++| +.|++|++||+.+........ ...+...+.++.+.++ .|+
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~ 83 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA-------SLQVDSKFNDLDWSHNNKIIA 83 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC-------CCCCSSCEEEEEECSSSSCEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE-------EEecCCceEEEEECCCCCeEE
Confidence 45678889985 44 89999 899999999987643211100 0124567888888765 589
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC-CCEEEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD-ETLLYSVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s 161 (362)
+++.||.|++|++........ ....+..|...|.+++|+|+ +++|++++
T Consensus 84 ~~~~dg~v~vw~~~~~~~~~~------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 133 (416)
T 2pm9_A 84 GALDNGSLELYSTNEANNAIN------------------------------SMARFSNHSSSVKTVKFNAKQDNVLASGG 133 (416)
T ss_dssp EEESSSCEEEECCSSTTSCCC------------------------------EEEECCCSSSCCCEEEECSSSTTBEEEEC
T ss_pred EEccCCeEEEeeccccccccc------------------------------chhhccCCccceEEEEEcCCCCCEEEEEc
Confidence 999999999999875221000 11122468889999999998 89999999
Q ss_pred CCCcEEEEECCCce------EEEee--eccCcccEEEEEEcCC-Cc-EEEEeCCCeEEEEeCCCCCCcceeeh--hhhcc
Q 044557 162 WDRTIKIWRTSDFK------CLESI--TNAHDDAINAVALSDD-GD-VYTGSADKKIKVWRRSPGNKKHSLVD--VLERH 229 (362)
Q Consensus 162 ~d~~i~iwd~~~~~------~~~~~--~~~h~~~v~~v~~~~~-~~-~~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~h 229 (362)
.|+.|++||+.+.+ ....+ ...|...|.+++|+|+ +. +++++.||.|++||+.++.....+.. ...+|
T Consensus 134 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 134 NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI 213 (416)
T ss_dssp SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCC
T ss_pred CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccccc
Confidence 99999999998876 22222 2368889999999998 44 78999999999999987643322211 01122
Q ss_pred ccceeEEEEecCC-CEEEEEcCCC---cEEEEeccCCCCcEEEEEeec-CccceeEEEEEeC---CeEEEeeCCCcEEEe
Q 044557 230 NSGINALALSCDG-SVLYSGACDR---SIIVWEKEEDDGNILVVGALR-GHTKSILCMAVVS---DLVCSGSADKTIRIW 301 (362)
Q Consensus 230 ~~~v~~i~~s~~~-~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~---~~~~s~s~D~~i~~W 301 (362)
..+|.+++|+|++ .+|++++.|+ .|++||++..... ...+. +|...|.+++|++ .++++++.|+.|++|
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 7889999999997 6899999999 9999999875322 23456 8999999999975 389999999999999
Q ss_pred eCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 302 RGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 302 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+.. ..+++..+.+|...|.+++|+|++. .+|++++.|+.|++|++...
T Consensus 291 d~~--~~~~~~~~~~~~~~v~~~~~s~~~~--------~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 291 NPE--SAEQLSQFPARGNWCFKTKFAPEAP--------DLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CSS--SCCEEEEEECSSSCCCCEEECTTCT--------TEEEECCSSSEEEEEESCCC
T ss_pred eCC--CCccceeecCCCCceEEEEECCCCC--------CEEEEEecCCcEEEEEccCC
Confidence 964 3567888999999999999987642 47999999999999999654
No 53
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-34 Score=260.45 Aligned_cols=280 Identities=18% Similarity=0.221 Sum_probs=215.7
Q ss_pred ccCccc--eeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEE
Q 044557 16 KGHNSY--VSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIR 91 (362)
Q Consensus 16 ~gH~~~--V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~ 91 (362)
.+|... +.++.++++.+++++.|++|++||+.+..... ... ..+...+.++.+.++ .|++++.||.|+
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~--~~~------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSA--LAE------TDESTYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEE--EEE------CCTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeE--eee------cCCCCCEEEEEECCCCCEEEEECCCCeEE
Confidence 477665 45577778889999999999999987643211 110 114567888888764 599999999999
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
+|++..+.. ...+..|...|.+++|+ +++|++|+.|+.|++||+
T Consensus 160 iwd~~~~~~----------------------------------~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 160 IYDVESQTK----------------------------------LRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp EEETTTCCE----------------------------------EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEET
T ss_pred EEECcCCeE----------------------------------EEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEec
Confidence 999865431 11223578899999994 579999999999999999
Q ss_pred CC-ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC-EEEEE
Q 044557 172 SD-FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSG 248 (362)
Q Consensus 172 ~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~ 248 (362)
+. ...+..+ ..|...|.+++|+|++. +++++.||.|++||+.++.. ...+..|..+|.+++|+|++. .++++
T Consensus 204 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 204 RIANHQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP----KFTKTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp TSSSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE----EEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred ccCcceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc----cEEecCCcceEEEEEECCCCCCEEEEe
Confidence 84 4445544 47999999999999987 88999999999999987543 333456899999999999775 55565
Q ss_pred c--CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEE--eeCCCcEEEeeCCCCceeeeeEecCCCCcEE
Q 044557 249 A--CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCS--GSADKTIRIWRGIDRNYTCLAVLEGHRGPVK 322 (362)
Q Consensus 249 ~--~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s--~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~ 322 (362)
+ .|+.|++||+.+... +..+. +...|.+++|+++ .+++ |+.|+.|++|+...........+.+|...|.
T Consensus 279 ~gs~d~~i~i~d~~~~~~----~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~ 353 (401)
T 4aez_A 279 GGTMDKQIHFWNAATGAR----VNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL 353 (401)
T ss_dssp CCTTTCEEEEEETTTCCE----EEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCC
T ss_pred cCCCCCEEEEEECCCCCE----EEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEE
Confidence 4 799999999986542 22333 5667999999764 6777 5589999999976544555667889999999
Q ss_pred EEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+++|+|++ .+|++|+.||+|++|++..
T Consensus 354 ~~~~s~dg---------~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 354 YSALSPDG---------RILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEECTTS---------SEEEEECTTSEEEEEECCC
T ss_pred EEEECCCC---------CEEEEEeCCCcEEEEECCC
Confidence 99998754 4799999999999999964
No 54
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.8e-35 Score=262.71 Aligned_cols=268 Identities=17% Similarity=0.254 Sum_probs=186.7
Q ss_pred EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec------CCcEEEEecCCCCCCc
Q 044557 31 FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ------DHKIRVWKINNQEPDH 102 (362)
Q Consensus 31 ~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~------dg~i~~w~~~~~~~~~ 102 (362)
.+++++.+...+.|++.... ...|+..|.++.+++| .|++++. |++|++|+...+.+..
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~-------------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTA-------------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred eEEecCCCccccccCCCCCC-------------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 44555667888899864321 1236778999999876 4888886 6778888765443211
Q ss_pred ccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEe---
Q 044557 103 QKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLES--- 179 (362)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~--- 179 (362)
.. ......|...|.+++|+|++++ ++++.|++|+|||+.+++....
T Consensus 85 ~~------------------------------~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~ 133 (357)
T 4g56_B 85 SL------------------------------CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKF 133 (357)
T ss_dssp GG------------------------------CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCE
T ss_pred eE------------------------------ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEee
Confidence 00 0112468889999999999865 5678899999999988765432
Q ss_pred eeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEE
Q 044557 180 ITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVW 257 (362)
Q Consensus 180 ~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~w 257 (362)
...+|...|.+++|+|++. +++++.||+|++||+.++. ....+..|...|++++|+|++. ++++++.|++|++|
T Consensus 134 ~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~----~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~w 209 (357)
T 4g56_B 134 AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA----VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209 (357)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEEC
T ss_pred ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEE
Confidence 2246899999999999997 8899999999999998764 3445577999999999999875 78999999999999
Q ss_pred eccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccC
Q 044557 258 EKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCD 334 (362)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~ 334 (362)
|+++++... ......|...+.+++|+++ ++++|+.|+.|++|+.. ...++..+.+|...|++++|+|++.
T Consensus 210 d~~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~l~~sp~~~--- 282 (357)
T 4g56_B 210 DTRKPKPAT--RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK--NPDSAQTSAVHSQNITGLAYSYHSS--- 282 (357)
T ss_dssp CTTSSSCBC--BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS--CGGGCEEECCCSSCEEEEEECSSSS---
T ss_pred ECCCCceee--eeeeccccccccchhhhhcccceEEEeecccceeEEECC--CCcEeEEEeccceeEEEEEEcCCCC---
Confidence 998654321 1233456778999999753 79999999999999964 3566788999999999999987643
Q ss_pred CCCCceEEEecCCCCcEEEEeccc
Q 044557 335 SSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 335 ~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+|+|||.|++|+|||+..
T Consensus 283 -----~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 283 -----PFLASISEDCTVAVLDADF 301 (357)
T ss_dssp -----CCEEEEETTSCEEEECTTS
T ss_pred -----CEEEEEeCCCEEEEEECCC
Confidence 4799999999999999864
No 55
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-33 Score=254.87 Aligned_cols=251 Identities=21% Similarity=0.344 Sum_probs=200.9
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
..++.+++..|...|.+++|+ +.+|++|+.|+++++|++........ ......+..|...+.++.+.++ .+++
T Consensus 95 ~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~t 171 (354)
T 2pbi_B 95 TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM---AAKKKSVAMHTNYLSACSFTNSDMQILT 171 (354)
T ss_dssp TCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS---GGGCEEEEECSSCEEEEEECSSSSEEEE
T ss_pred CCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc---cccceeeeccCCcEEEEEEeCCCCEEEE
Confidence 345667788899999999994 78999999999999999864321111 1112334557778888888764 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCEEEEEE
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETLLYSVS 161 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s 161 (362)
++.|++|++||++.+.. ...+.+|...|.+++++| ++++|++|+
T Consensus 172 ~s~D~~v~lwd~~~~~~----------------------------------~~~~~~h~~~v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 172 ASGDGTCALWDVESGQL----------------------------------LQSFHGHGADVLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp EETTSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred EeCCCcEEEEeCCCCeE----------------------------------EEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence 99999999999875431 122346888999999987 568999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
.|+.|++||+++++++..+. .|...|.+++|+|++. +++++.|++|++||+........+ ....+...+.+++|+|
T Consensus 218 ~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~--~~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 218 CDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY--SKESIIFGASSVDFSL 294 (354)
T ss_dssp TTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCTTCCSCEEEEEECT
T ss_pred CCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE--cCCCcccceeEEEEeC
Confidence 99999999999999888775 7999999999999987 889999999999999765322111 1122345789999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
+|.+|++|+.|++|++||+.++. .+..+.+|...|.+++|+++ +|++||.|++|++|+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~----~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGS----RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCS----EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCc----eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999997643 34567899999999999875 899999999999995
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.6e-34 Score=263.41 Aligned_cols=279 Identities=19% Similarity=0.208 Sum_probs=208.4
Q ss_pred ceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--CceeEEEecCCcEEEEecC
Q 044557 21 YVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--ADKLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 21 ~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~l~s~~~dg~i~~w~~~ 96 (362)
.+++++| ++++|++|+.|++|++||+.+...... .. . ...+....+. ++.|++++.|+.|++|++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~--~~-------~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 127 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM--LK-------R-ADYTAVDTAKLQMRRFILGTTEGDIKVLDSN 127 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT--SC-------S-CCEEEEEEECSSSCEEEEEETTSCEEEECTT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeE--Ee-------c-CCceEEEEEecCCCEEEEEECCCCEEEEeCC
Confidence 3446777 478999999999999999865332111 00 0 1112222333 4569999999999999986
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceE
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 176 (362)
.... . ..+..|.+.|.+++|+|++++|++|+.|+.|++||+++++.
T Consensus 128 ~~~~-------~---------------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 173 (420)
T 3vl1_A 128 FNLQ-------R---------------------------EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173 (420)
T ss_dssp SCEE-------E---------------------------EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC
T ss_pred Ccce-------e---------------------------eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC
Confidence 4321 0 01125888999999999999999999999999999999888
Q ss_pred EEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccc---------------------ccee
Q 044557 177 LESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHN---------------------SGIN 234 (362)
Q Consensus 177 ~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~---------------------~~v~ 234 (362)
+..+. +|...|.+++|+|++. +++++.||.|++||+.++.....+ .....|. .++.
T Consensus 174 ~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 174 PRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF-NRKENPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE-CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred ceEEc-CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEe-ecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence 77775 7999999999999987 889999999999999876533322 1111233 4445
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeee
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCL 311 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~ 311 (362)
+++|+|++++|++|+.||.|++||+.+... ......+|...|.+++|+++ ++++++.|+.|++|+..... .++
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-~~~ 327 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE-CPV 327 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCS
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-Cch
Confidence 555678999999999999999999986542 22234568889999999865 89999999999999975422 335
Q ss_pred eEecC-CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 312 AVLEG-HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 312 ~~l~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
..+.+ |...|.++.+. + +.+|++|+.|++|++|++..+
T Consensus 328 ~~~~~~~~~~v~~~~~~-~---------~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 328 GEFLINEGTPINNVYFA-A---------GALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEEESTTSCEEEEEEE-T---------TEEEEEETTTEEEEEEEECCT
T ss_pred hhhhccCCCCceEEEeC-C---------CCEEEEecCCccEEEEeccCC
Confidence 66666 67788888553 2 257999999999999998653
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.3e-34 Score=261.98 Aligned_cols=277 Identities=20% Similarity=0.328 Sum_probs=207.8
Q ss_pred ceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCC
Q 044557 21 YVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINN 97 (362)
Q Consensus 21 ~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~ 97 (362)
.+..|+|+ ++.|++| .|++|+|||..+..... .+. ...+...|.++.+.++ .|++|+.||+|++||++.
T Consensus 107 y~~~l~wS~~n~lAvg-ld~tV~lWd~~tg~~~~--~~~-----~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQ--LLQ-----MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp TCBCEEECTTSEEEEE-ETTEEEEEETTTCCEEE--EEE-----CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cceeEEECCCCEEEEE-eCCEEEEEECCCCCEEE--EEE-----ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence 35667886 4566655 69999999987643211 110 0123457899999765 599999999999999875
Q ss_pred CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEE
Q 044557 98 QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCL 177 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 177 (362)
+.. ...+.+|...+.+++++ +.+|++|+.|+.+++||.......
T Consensus 179 ~~~----------------------------------~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~ 222 (420)
T 4gga_A 179 QKR----------------------------------LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 222 (420)
T ss_dssp TEE----------------------------------EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CcE----------------------------------EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee
Confidence 421 11223577888887664 679999999999999998875433
Q ss_pred EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC-EEEE--EcCCCc
Q 044557 178 ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYS--GACDRS 253 (362)
Q Consensus 178 ~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s--~~~d~~ 253 (362)
.....+|...+..+.++|++. +++++.|+.|++|+..++............|...|.+++|+|++. .+++ |+.|++
T Consensus 223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~ 302 (420)
T 4gga_A 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 302 (420)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE
T ss_pred eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE
Confidence 333348999999999999987 889999999999999877654444445567899999999999665 4444 468999
Q ss_pred EEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEE--eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 254 IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCS--GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 254 i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s--~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
|++||+.++. ....+..| ..+.++.+.++ .+++ |+.|+.|++|+.. ...++.+|.||.+.|++++|+|+
T Consensus 303 I~iwd~~t~~----~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~--~~~~v~~l~gH~~~V~~l~~spd 375 (420)
T 4gga_A 303 IRIWNVCSGA----CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYP--TMAKVAELKGHTSRVLSLTMSPD 375 (420)
T ss_dssp EEEEETTTTE----EEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETT--TCCEEEEECCCSSCEEEEEECTT
T ss_pred EEEEeCCccc----cceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECC--CCcEEEEEcCCCCCEEEEEEcCC
Confidence 9999998643 23334444 45777777654 5554 4489999999964 46778999999999999999876
Q ss_pred CCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 330 NDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 330 ~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ .+|+|||.|++|||||+.
T Consensus 376 g---------~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 376 G---------ATVASAAADETLRLWRCF 394 (420)
T ss_dssp S---------SCEEEEETTTEEEEECCS
T ss_pred C---------CEEEEEecCCeEEEEECC
Confidence 5 469999999999999984
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.9e-34 Score=260.82 Aligned_cols=293 Identities=16% Similarity=0.263 Sum_probs=217.3
Q ss_pred ceeeecccCccceeee-Ee--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 10 HCLTTLKGHNSYVSSL-AL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l-~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
++..++.+| .+.++ .+ ++++|++|+.||+|++||+.+... .. ....|...+.++.+.++ .|+++
T Consensus 89 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~-------~~~~h~~~v~~~~~~~~~~~l~s~ 157 (420)
T 3vl1_A 89 DGSKMLKRA--DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ--RE-------IDQAHVSEITKLKFFPSGEALISS 157 (420)
T ss_dssp ETTTTSCSC--CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE--EE-------ETTSSSSCEEEEEECTTSSEEEEE
T ss_pred ceeeEEecC--CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce--ee-------ecccccCccEEEEECCCCCEEEEE
Confidence 344455566 33333 33 478999999999999999864321 11 11235678899988755 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|++|++||+...... ..+..|...|.+++|+|++++|++++.|+
T Consensus 158 s~d~~i~iwd~~~~~~~----------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 203 (420)
T 3vl1_A 158 SQDMQLKIWSVKDGSNP----------------------------------RTLIGHRATVTDIAIIDRGRNVLSASLDG 203 (420)
T ss_dssp ETTSEEEEEETTTCCCC----------------------------------EEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred eCCCeEEEEeCCCCcCc----------------------------------eEEcCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 99999999999754311 12346889999999999999999999999
Q ss_pred cEEEEECCCceEEEeeec--cCcccEEEEE---------------------EcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 165 TIKIWRTSDFKCLESITN--AHDDAINAVA---------------------LSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~--~h~~~v~~v~---------------------~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.|++||+++++++..+.. .|...+.+++ |+|++. +++++.||.|++||+.++....
T Consensus 204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI 283 (420)
T ss_dssp CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE
T ss_pred cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE
Confidence 999999999988877652 2444455554 467886 8899999999999998765332
Q ss_pred eeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCC-eEEEeeCCCc
Q 044557 221 SLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~s~s~D~~ 297 (362)
. ....|..+|.+++|+|++. +|++|+.||.|++||+++...... .+.+ |...|.++.+.+. ++++++.|+.
T Consensus 284 ~---~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 284 Q---LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG---EFLINEGTPINNVYFAAGALFVSSGFDTS 357 (420)
T ss_dssp E---ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE---EEEESTTSCEEEEEEETTEEEEEETTTEE
T ss_pred E---cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh---hhhccCCCCceEEEeCCCCEEEEecCCcc
Confidence 2 2345788999999999999 999999999999999987544222 2333 6677888877654 8999999999
Q ss_pred EEEeeCCCCc-------eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 298 IRIWRGIDRN-------YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 298 i~~W~~~~~~-------~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
|++|+..... ......+.+|...|.+++|+|++. ..+.++++| .+|.+++|++..|
T Consensus 358 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~~g~l~a~g-~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 358 IKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE-----SNGEVLEVG-KNNFCALYNLSNP 420 (420)
T ss_dssp EEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS-----SSCEEEEEE-TTTEEEEEESCC-
T ss_pred EEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC-----CcceEEEEc-CCceEEEEeccCC
Confidence 9999964311 011234678999999999998754 223455554 6789999999765
No 59
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.6e-34 Score=255.26 Aligned_cols=282 Identities=11% Similarity=0.124 Sum_probs=220.6
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEc--Cc-eeEEEe
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVL--AD-KLFSAH 85 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~-~l~s~~ 85 (362)
.+....+|.+.|++++|+ +++|++|+.|++|++||+........ ......+...+.++.+. +. .+++++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD------LLQSLRYKHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE------EEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc------ceeeeecCCceEEEEECCCCCcEEEEEc
Confidence 445567999999999995 78999999999999999875431111 11123456778888876 45 799999
Q ss_pred cCCcEEEEec-CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee--ecCceeEEEEecCCCEEEEEEC
Q 044557 86 QDHKIRVWKI-NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH--HVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 86 ~dg~i~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
.||.|++|++ ..... ..+.. |...|.+++|+| +++|++++.
T Consensus 77 ~dg~i~~wd~~~~~~~-----------------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~ 120 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF-----------------------------------QALTNNEANLGICRICKYG-DDKLIAASW 120 (342)
T ss_dssp TTSCEEEECSSSSSSE-----------------------------------EECBSCCCCSCEEEEEEET-TTEEEEEET
T ss_pred CCCeEEEEEeccCCce-----------------------------------EeccccCCCCceEEEEeCC-CCEEEEEcC
Confidence 9999999998 65321 11124 788999999999 999999999
Q ss_pred CCcEEEEECCC---------ceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC-CCCcceeehhhhccccc
Q 044557 163 DRTIKIWRTSD---------FKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSP-GNKKHSLVDVLERHNSG 232 (362)
Q Consensus 163 d~~i~iwd~~~---------~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~h~~~ 232 (362)
|+.|++||+++ .+++..+. |...|.+++|+|++ +++++.|+.|++||+.. +.... ......|...
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~ 195 (342)
T 1yfq_A 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNG--TIEESGLKYQ 195 (342)
T ss_dssp TSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCC--EEEECSCSSC
T ss_pred CCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccc--eeeecCCCCc
Confidence 99999999887 66555543 78899999999988 99999999999999987 43221 1123357889
Q ss_pred eeEEEEec-CCCEEEEEcCCCcEEEEeccCC-----CCcEEEEEeecCccc---------eeEEEEEeCC--eEEEeeCC
Q 044557 233 INALALSC-DGSVLYSGACDRSIIVWEKEED-----DGNILVVGALRGHTK---------SILCMAVVSD--LVCSGSAD 295 (362)
Q Consensus 233 v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~~~~~h~~---------~v~~~~~~~~--~~~s~s~D 295 (362)
|.+++|+| ++.++++++.||.|++|++... ... ...+.+|.. .|.+++|+++ ++++++.|
T Consensus 196 i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK---RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT---CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc---ceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence 99999999 9999999999999999999765 122 223455544 8999999764 89999999
Q ss_pred CcEEEeeCCCCceeeeeEecCC-CCcEEEEEeeecCCccCCCCCceEEEecCCCCc-EEEEe
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGH-RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD-IKVWQ 355 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~-i~~W~ 355 (362)
+.|++|+.. ..+++..+.+| ...|.+++ |++ .+|++||.||+ .+.|.
T Consensus 273 g~i~vwd~~--~~~~~~~~~~~h~~~v~~~~--~~~---------~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 273 GIISCWNLQ--TRKKIKNFAKFNEDSVVKIA--CSD---------NILCLATSDDTFKTNAA 321 (342)
T ss_dssp SCEEEEETT--TTEEEEECCCCSSSEEEEEE--ECS---------SEEEEEEECTHHHHCSS
T ss_pred ceEEEEcCc--cHhHhhhhhcccCCCceEec--CCC---------CeEEEEecCCccccccc
Confidence 999999964 35668889998 99999998 554 46999999999 44443
No 60
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.2e-33 Score=252.03 Aligned_cols=300 Identities=14% Similarity=0.212 Sum_probs=206.5
Q ss_pred eecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC----ceeEEEec
Q 044557 13 TTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA----DKLFSAHQ 86 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~l~s~~~ 86 (362)
..++||.+.|++++|+ +++|++|+.||+|++||+......... ...+..|...+.++.+.+ +.|++++.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL-----SDSWRAHDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE-----EEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee-----cceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence 4578999999999994 789999999999999998754321110 112234677899998864 46999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC--CCEEEEEECCC
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDR 164 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~ 164 (362)
|++|++||++......... .......+..|...|.+++|+|+ +++|++++.|+
T Consensus 80 dg~v~vwd~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 134 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGR-------------------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG 134 (351)
T ss_dssp TSCEEEEEECTTSCTTSSC-------------------------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC
T ss_pred CCeEEEEecCCCccccccc-------------------------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC
Confidence 9999999997654211000 00011223468889999999999 99999999999
Q ss_pred cEEEEECCCceEEEeee------------ccCcccEEEEEEcCC---Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc
Q 044557 165 TIKIWRTSDFKCLESIT------------NAHDDAINAVALSDD---GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER 228 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~------------~~h~~~v~~v~~~~~---~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 228 (362)
.|++||+++++.+..+. ..|...+.+++|+|+ +. +++++.|+.+.+|+...+.. .....+..
T Consensus 135 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 212 (351)
T 3f3f_A 135 ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL--HVAAKLPG 212 (351)
T ss_dssp EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE--EEEEECCC
T ss_pred cEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce--eeeeecCC
Confidence 99999998765433221 257778999999996 54 88999999998887765432 23445667
Q ss_pred cccceeEEEEecCC----CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC------CeEEEeeCCCcE
Q 044557 229 HNSGINALALSCDG----SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS------DLVCSGSADKTI 298 (362)
Q Consensus 229 h~~~v~~i~~s~~~----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~s~s~D~~i 298 (362)
|..+|++++|+|++ .+|++|+.||.|++||+......... ..+........... .....+..+..+
T Consensus 213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (351)
T 3f3f_A 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS----EESLTNSNMFDNSADVDMDAQGRSDSNTEEKA 288 (351)
T ss_dssp CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------
T ss_pred CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc----CCcccceeccCCCcccccccccccccccceee
Confidence 99999999999998 89999999999999999864332211 11112222222211 122334455566
Q ss_pred EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 299 RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
++|+ .....++..+.+|...|++++|+|++ .+|++|+.||.|++|++...
T Consensus 289 ~~~~--~~~~~~~~~~~~h~~~v~~~~~s~~~---------~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 289 ELQS--NLQVELLSEHDDHNGEVWSVSWNLTG---------TILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp --CC--SEEEEEEEEECTTSSCEEEEEECSSS---------CCEEEEETTSCEEEEEECTT
T ss_pred eecc--cccccEEEEEecccccEEEEEEcCCC---------CEEEEecCCCcEEEEecCcC
Confidence 6665 33567788899999999999998764 46999999999999999753
No 61
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-34 Score=262.24 Aligned_cols=265 Identities=20% Similarity=0.336 Sum_probs=197.1
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~ 82 (362)
..++.+++++|...|.+++|+ +++|++|+.|++|++||+........ .......+..|.+.+.++.+.+ ..|+
T Consensus 97 ~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~--~~~~~~~~~gh~~~v~~~~~~~~~~~~l~ 174 (380)
T 3iz6_a 97 TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG--NMPVSRVLTGHKGYASSCQYVPDQETRLI 174 (380)
T ss_dssp TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC--SSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC--CccceeeccCCCcceEEEEEecCCCCEEE
Confidence 456788899999999999994 78999999999999999865321100 0001122334566677776654 3599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEE
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVS 161 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s 161 (362)
+++.|++|++||+..+... ..... ....+|...|.+++++| ++++|++|+
T Consensus 175 s~s~D~~i~~wd~~~~~~~-------~~~~~----------------------~~~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 175 TGSGDQTCVLWDVTTGQRI-------SIFGS----------------------EFPSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp EECTTSCEEEECTTTCCEE-------EEECC----------------------CSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred EECCCCcEEEEEcCCCcEE-------EEeec----------------------ccCCCCccCeEEEEeecCCCCEEEEEE
Confidence 9999999999999765421 10000 00025788899999976 889999999
Q ss_pred CCCcEEEEECCC-ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehh---hhccccceeEE
Q 044557 162 WDRTIKIWRTSD-FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDV---LERHNSGINAL 236 (362)
Q Consensus 162 ~d~~i~iwd~~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~h~~~v~~i 236 (362)
.|++|++||++. .+.+..+ .+|...|.+++|+|++. +++++.||+|++||+.++.....+... ...+...|+++
T Consensus 226 ~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 304 (380)
T 3iz6_a 226 CDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV 304 (380)
T ss_dssp TTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE
T ss_pred CCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE
Confidence 999999999974 4555555 47999999999999987 889999999999999876533222110 11223458999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
+|+|+|++|++|+.||.|++||....+..........+|.+.|.+++|+++ +|+|||.|++|++|+..
T Consensus 305 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred EECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 999999999999999999999987644221111122689999999999865 89999999999999954
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.8e-33 Score=267.93 Aligned_cols=323 Identities=17% Similarity=0.201 Sum_probs=218.4
Q ss_pred cceeeecccCccceeeeEec--Cc-EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc---eeEEEEEcCc---
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GK-FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG---AVKSLVVLAD--- 79 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~-~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~--- 79 (362)
.+++.++.+|.+.|.++.|+ ++ .+++++.|++|++||+.+.. ... .+..+.. .+.++.+.++
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~-------~~~~~~~~~~~v~~~~~~~~~~~ 220 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSA-------SDRTHHKQGSFVRDVEFSPDSGE 220 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEE-------EECSSSCTTCCEEEEEECSTTCC
T ss_pred CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eee-------eecccCCCCceEEEEEECCCCCC
Confidence 34677889999999999995 44 89999999999999976532 111 1122445 7888888765
Q ss_pred eeEEEecCCcEEEEecCCCCCCccc-------ceeeeeccCCCchhhhhccccccceeeeeeeeEEee--ecC------c
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQK-------YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH--HVD------A 144 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~------~ 144 (362)
.+++++.|+.|++||+..+...... ...+..+.......+.....++.+.+++........ ... .
T Consensus 221 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 300 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ 300 (615)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGC
T ss_pred EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCc
Confidence 5999999999999998765421110 000000000011111111112223333332221111 112 1
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcc---------------------------------cEEEE
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD---------------------------------AINAV 191 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~---------------------------------~v~~v 191 (362)
+.++.++ +++++++++.|+.|++||+.+++.+..+. .|.. .|.++
T Consensus 301 ~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~ 378 (615)
T 1pgu_A 301 QVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS-GHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSL 378 (615)
T ss_dssp EEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC-CCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEE
T ss_pred eeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe-CCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEE
Confidence 3455554 77888888888889898888776665543 3444 44455
Q ss_pred EEcCCCcEEEEeCCCeEEEEeCCCCCC-----------------------------------------------------
Q 044557 192 ALSDDGDVYTGSADKKIKVWRRSPGNK----------------------------------------------------- 218 (362)
Q Consensus 192 ~~~~~~~~~s~~~dg~i~iw~~~~~~~----------------------------------------------------- 218 (362)
+|++++.+++++.|+.|++|++.++..
T Consensus 379 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (615)
T 1pgu_A 379 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY 458 (615)
T ss_dssp ECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSE
T ss_pred EECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCE
Confidence 553344566777777777776532100
Q ss_pred -------cc----------eee-hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-cccee
Q 044557 219 -------KH----------SLV-DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSI 279 (362)
Q Consensus 219 -------~~----------~~~-~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v 279 (362)
.. .+. ..+..|..+|++++|+|++++|++++.|+.|++||+.+.+ .+..+.+ |...|
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~h~~~v 534 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE----VKTSRWAFRTSKI 534 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEECCSCCCSSCE
T ss_pred EEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc----ceeEeecCCCCce
Confidence 00 000 3445688899999999999999999999999999997643 3456677 99999
Q ss_pred EEEEEeC----------C--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 280 LCMAVVS----------D--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 280 ~~~~~~~----------~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
.+++|++ + ++++++.|+.|++|+.... ..++..+.+|...|.+++|+|++ . |++++.
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~l~~s~~~---------~-l~s~~~ 603 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-MKIIKALNAHKDGVNNLLWETPS---------T-LVSSGA 603 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-TCCEEETTSSTTCEEEEEEEETT---------E-EEEEET
T ss_pred eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC-ceechhhhcCccceEEEEEcCCC---------C-eEEecC
Confidence 9999976 4 8999999999999997542 25678899999999999999763 5 889999
Q ss_pred CCcEEEEecc
Q 044557 348 DCDIKVWQIS 357 (362)
Q Consensus 348 D~~i~~W~~~ 357 (362)
||+|++|++.
T Consensus 604 d~~v~iw~~~ 613 (615)
T 1pgu_A 604 DACIKRWNVV 613 (615)
T ss_dssp TSCEEEEEEC
T ss_pred CceEEEEeee
Confidence 9999999986
No 63
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.7e-33 Score=249.69 Aligned_cols=249 Identities=20% Similarity=0.305 Sum_probs=192.5
Q ss_pred eEEeecceeEEEEE-----c---CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeee
Q 044557 63 IVAVGKGAVKSLVV-----L---ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHK 134 (362)
Q Consensus 63 ~~~~~~~~v~~i~~-----~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (362)
.+..|...|.++.+ . +..|++++.|++|++|++...+..... ...
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~---------------------------~~~ 68 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF---------------------------GIP 68 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS---------------------------EEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc---------------------------ccc
Confidence 34557788999987 3 346999999999999998654311000 001
Q ss_pred eeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeC
Q 044557 135 TCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRR 213 (362)
Q Consensus 135 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~ 213 (362)
...+.+|...|.+++|+|++.+|++|+.|++|++||+++++++..+. +|...|.+++|+|++. +++++.|++|++||+
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 12345789999999999999999999999999999999998888775 7999999999999997 889999999999998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCC----------CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEE
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDG----------SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMA 283 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~----------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~ 283 (362)
... .. ........|...|.+++|+|++ .+|++++.|++|++||... .....+.+|...|.+++
T Consensus 148 ~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~ 220 (343)
T 2xzm_R 148 LGE-CK-FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLS 220 (343)
T ss_dssp SSC-EE-EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEE
T ss_pred cCC-ce-eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEE
Confidence 632 11 1122334688899999999987 7999999999999999432 23446788999999999
Q ss_pred EeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 284 VVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 284 ~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|+++ +|++|+.|+.|++|+.... ......+ .|...|.+++|+|++ .+|+ ++.|+.|++|++..
T Consensus 221 ~s~~g~~l~sgs~dg~v~iwd~~~~-~~~~~~~-~~~~~v~~v~~sp~~---------~~la-~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 221 ISPNGKYIATGGKDKKLLIWDILNL-TYPQREF-DAGSTINQIAFNPKL---------QWVA-VGTDQGVKIFNLMT 285 (343)
T ss_dssp ECTTSSEEEEEETTCEEEEEESSCC-SSCSEEE-ECSSCEEEEEECSSS---------CEEE-EEESSCEEEEESSS
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC-cccceee-cCCCcEEEEEECCCC---------CEEE-EECCCCEEEEEeCC
Confidence 9865 8999999999999996322 1223333 355679999998764 3454 55688999999853
No 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-33 Score=292.96 Aligned_cols=245 Identities=19% Similarity=0.334 Sum_probs=198.6
Q ss_pred eeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec
Q 044557 11 CLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ 86 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~ 86 (362)
+..++.+|.+.|++++|+ ++++++|+.||+|++||+.+... .. .+..|...|.++.++++ .+++++.
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~--~~-------~~~~h~~~v~~~~~s~~~~~l~s~~~ 677 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK--LL-------DIKAHEDEVLCCAFSSDDSYIATCSA 677 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EE-------EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE--EE-------EeccCCCCEEEEEEecCCCEEEEEeC
Confidence 445688999999999994 78999999999999999876431 11 12245678899988765 5999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCEEEEEECCC
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETLLYSVSWDR 164 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~ 164 (362)
|++|++||+.++.. ...+..|...|.+++|+| ++.++++|+.|+
T Consensus 678 d~~v~vwd~~~~~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~ 723 (1249)
T 3sfz_A 678 DKKVKIWDSATGKL----------------------------------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723 (1249)
T ss_dssp TSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred CCeEEEEECCCCce----------------------------------EEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence 99999999875431 112346888999999999 556899999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee---------------------
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL--------------------- 222 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~--------------------- 222 (362)
.|++||+++++++..+. +|...|.+++|+|++. +++++.||.|++||+.++.....+
T Consensus 724 ~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1249)
T 3sfz_A 724 FLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802 (1249)
T ss_dssp CEEEEETTSSSEEEEEC-CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBC
T ss_pred eEEEEECCCcchhheec-CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEE
Confidence 99999999999888775 7999999999999997 889999999999998654321110
Q ss_pred ------------------------------ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEee
Q 044557 223 ------------------------------VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGAL 272 (362)
Q Consensus 223 ------------------------------~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 272 (362)
......|...|.+++|+|++.++++++.|+.|++|+..+.. ....+
T Consensus 803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~----~~~~~ 878 (1249)
T 3sfz_A 803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL----KVADC 878 (1249)
T ss_dssp CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE----EEEEE
T ss_pred EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----eeeec
Confidence 00112577889999999999999999999999999997632 35567
Q ss_pred cCccceeEEEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 273 RGHTKSILCMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 273 ~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
.+|...|.+++|+++ .+++++.|+.|++|+.
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 899999999999865 8999999999999973
No 65
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-33 Score=278.00 Aligned_cols=321 Identities=8% Similarity=0.085 Sum_probs=209.8
Q ss_pred cCccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEE
Q 044557 17 GHNSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVW 93 (362)
Q Consensus 17 gH~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w 93 (362)
.|...|.+|+|+ +++|++++.|++|++||+.+.. ....+ .+.+.+.++.+.++ .+++++.||+|++|
T Consensus 56 ~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~--~~~~~--------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lw 125 (902)
T 2oaj_A 56 EDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK--VLTTV--------FVPGKITSIDTDASLDWMLIGLQNGSMIVY 125 (902)
T ss_dssp SSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCS--EEEEE--------ECSSCEEEEECCTTCSEEEEEETTSCEEEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc--EEEEE--------cCCCCEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 488999999996 6789999999999999987642 11111 13457888888654 59999999999999
Q ss_pred ecCCCCCCc-----------------ccceeeeeccCCCchhhhhccccccceeeeee----eeEEe-------------
Q 044557 94 KINNQEPDH-----------------QKYTRLATLPTLGDRAIKLLMPKNHVQIRRHK----TCTWV------------- 139 (362)
Q Consensus 94 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------------- 139 (362)
|++...... ..+..+...|... ..+.....++.+ +++.+ ...+.
T Consensus 126 d~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~-~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~ 203 (902)
T 2oaj_A 126 DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI-GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS 203 (902)
T ss_dssp ETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE-EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC
T ss_pred ECCCCccccceeccccccccccccCCCCeEEEEEccCCC-CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccc
Confidence 997654210 0111111111100 000111111222 33221 11122
Q ss_pred -----eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEe--ee--c-------------cCcccEEEEEEc---
Q 044557 140 -----HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLES--IT--N-------------AHDDAINAVALS--- 194 (362)
Q Consensus 140 -----~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~--~-------------~h~~~v~~v~~~--- 194 (362)
+|...|.+++|+|++++|++|+.|+.|++||+++++++.. +. . .|...|.+++|+
T Consensus 204 ~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~ 283 (902)
T 2oaj_A 204 EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN 283 (902)
T ss_dssp CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS
T ss_pred cccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC
Confidence 2357899999999999999999999999999998877643 21 0 134578888884
Q ss_pred -CCC-c-EEEEeCC-----CeEEEEe------------------------------------------------------
Q 044557 195 -DDG-D-VYTGSAD-----KKIKVWR------------------------------------------------------ 212 (362)
Q Consensus 195 -~~~-~-~~s~~~d-----g~i~iw~------------------------------------------------------ 212 (362)
|++ . +++|+.| +.+++|+
T Consensus 284 ~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d 363 (902)
T 2oaj_A 284 NPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHN 363 (902)
T ss_dssp STTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBS
T ss_pred CCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCC
Confidence 433 3 4455443 1444444
Q ss_pred -----------------CCCCCCcce---eehhhhccccce----------------------------------eEEEE
Q 044557 213 -----------------RSPGNKKHS---LVDVLERHNSGI----------------------------------NALAL 238 (362)
Q Consensus 213 -----------------~~~~~~~~~---~~~~~~~h~~~v----------------------------------~~i~~ 238 (362)
+.++..... ....+..|..+| .+++|
T Consensus 364 ~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~ 443 (902)
T 2oaj_A 364 PGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLP 443 (902)
T ss_dssp CSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCC
T ss_pred ceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccc
Confidence 332211000 000111222334 44555
Q ss_pred ecCCCEEEEEcCCCcEEEEeccCCCCc--EEEEEeec-----CccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCc--
Q 044557 239 SCDGSVLYSGACDRSIIVWEKEEDDGN--ILVVGALR-----GHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRN-- 307 (362)
Q Consensus 239 s~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~-----~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~-- 307 (362)
+|++++|++|+.|++|++||+..+... ......+. +|...|.+++|+++ +||+|+.|++|+||+.....
T Consensus 444 spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 444 AEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp CSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred cccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence 789999999999999999998765311 00111122 78999999999875 99999999999999864321
Q ss_pred -----------------------------------------eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 308 -----------------------------------------YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 308 -----------------------------------------~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
+.++..+.+|.+.|++++|+|+ + +||+|+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd---------G-~lAsgs 593 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI---------G-FVGIAY 593 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT---------S-EEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC---------c-EEEEEe
Confidence 2457889999999999999875 3 699999
Q ss_pred CCCcEEEEecccC
Q 044557 347 LDCDIKVWQISFP 359 (362)
Q Consensus 347 ~D~~i~~W~~~~~ 359 (362)
.|++|+|||+..+
T Consensus 594 ~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 594 AAGSLMLIDRRGP 606 (902)
T ss_dssp TTSEEEEEETTTT
T ss_pred CCCcEEEEECCCC
Confidence 9999999998765
No 66
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.1e-33 Score=277.36 Aligned_cols=289 Identities=20% Similarity=0.352 Sum_probs=231.5
Q ss_pred cceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEE
Q 044557 9 HHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSA 84 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~ 84 (362)
.+..++|++|.+.|++++|+ +++|++|+.||+|++||+.+.. .. ..+..+.+.+.++.+.++ .|+++
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~--~~-------~~~~~~~~~v~~~~~s~~~~~l~~~ 73 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--EV-------RSIQVTETPVRAGKFIARKNWIIVG 73 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EE-------EEEECCSSCEEEEEEEGGGTEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc--eE-------EEEecCCCcEEEEEEeCCCCEEEEE
Confidence 45678899999999999995 7899999999999999986532 11 122345678889988765 59999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.||.|++|++..+.. ...+..|.+.|.+++|+|++++|++++.|+
T Consensus 74 ~~dg~i~vw~~~~~~~----------------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 119 (814)
T 3mkq_A 74 SDDFRIRVFNYNTGEK----------------------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119 (814)
T ss_dssp ETTSEEEEEETTTCCE----------------------------------EEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred eCCCeEEEEECCCCcE----------------------------------EEEEecCCCCEEEEEEeCCCCEEEEEcCCC
Confidence 9999999999875431 112345888999999999999999999999
Q ss_pred cEEEEECCCc-eEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-
Q 044557 165 TIKIWRTSDF-KCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC- 240 (362)
Q Consensus 165 ~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~- 240 (362)
.|++||++++ .....+ ..|...|.+++|+| ++. +++++.||.|++||+.++.....+. ..+..++.+++|+|
T Consensus 120 ~i~vw~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~ 195 (814)
T 3mkq_A 120 TVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT---TGQERGVNYVDYYPL 195 (814)
T ss_dssp EEEEEEGGGTSEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE---CCCTTCCCEEEECCS
T ss_pred EEEEEECCCCceEEEEE-cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe---cCCCCCEEEEEEEEC
Confidence 9999999887 444444 47999999999999 665 8899999999999997765433321 23448899999999
Q ss_pred -CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCC
Q 044557 241 -DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH 317 (362)
Q Consensus 241 -~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h 317 (362)
++.+|++++.|+.|++||..+.. .+..+.+|...|.+++++++ ++++++.||.|++|+.. ....+..+..|
T Consensus 196 ~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~--~~~~~~~~~~~ 269 (814)
T 3mkq_A 196 PDKPYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS--TYKVEKTLNVG 269 (814)
T ss_dssp TTCCEEEEECTTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT--TCSEEEEECCS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCcEEEEeecC
Confidence 99999999999999999987533 34567789999999999865 89999999999999964 35667889999
Q ss_pred CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 318 RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 318 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...|++++|+|++.. .+++++ .|+.+.+|++..
T Consensus 270 ~~~v~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~ 302 (814)
T 3mkq_A 270 LERSWCIATHPTGRK-------NYIASG-FDNGFTVLSLGN 302 (814)
T ss_dssp SSSEEEEEECTTCGG-------GEEEEE-ETTEEEEEECSC
T ss_pred CCcEEEEEEccCCCc-------eEEEEE-eCCCEEEEEcCC
Confidence 999999999876532 235554 577788898753
No 67
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-33 Score=255.96 Aligned_cols=235 Identities=27% Similarity=0.513 Sum_probs=186.7
Q ss_pred ceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecC
Q 044557 21 YVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 21 ~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~ 96 (362)
.|.+++|+ +++|++|+.|++|++||+.+.. .. ..+..|...+.++.+.++ .|++++.|++|++||+.
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~-------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRK--IV-------MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EE-------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EE-------EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence 48999994 7899999999999999987532 11 122345678888988754 69999999999999986
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCce
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFK 175 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~ 175 (362)
.+... ....+...+.+++++| ++++|++|+.|+.|++||+++++
T Consensus 196 ~~~~~-----------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~ 240 (393)
T 1erj_A 196 TGQCS-----------------------------------LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240 (393)
T ss_dssp TTEEE-----------------------------------EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC
T ss_pred CCeeE-----------------------------------EEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 53210 0113456789999999 89999999999999999999988
Q ss_pred EEEeee------ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc--------ceeehhhhccccceeEEEEec
Q 044557 176 CLESIT------NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK--------HSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 176 ~~~~~~------~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~--------~~~~~~~~~h~~~v~~i~~s~ 240 (362)
.+..+. .+|...|.+++|+|++. +++++.||+|++||+.+.... ......+.+|...|.+++|+|
T Consensus 241 ~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 320 (393)
T 1erj_A 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 320 (393)
T ss_dssp EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG
T ss_pred EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC
Confidence 766552 36889999999999997 889999999999998764321 112234567899999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--------CeEEEeeCCCcEEEeeC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--------DLVCSGSADKTIRIWRG 303 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~s~s~D~~i~~W~~ 303 (362)
++.+|++|+.|+.|++||..++. .+..+.+|...|.++++.+ ++++|||.|++|++|+.
T Consensus 321 ~~~~l~sgs~D~~v~iwd~~~~~----~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 321 NDEYILSGSKDRGVLFWDKKSGN----PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp GGCEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCe----EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 99999999999999999998654 3456789999999999864 37999999999999984
No 68
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=259.16 Aligned_cols=289 Identities=13% Similarity=0.191 Sum_probs=219.2
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVW 93 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w 93 (362)
|.+.|++++|+ +++|++|+.||.|++||... .... .+..+...+.++.+.++ .+++++.|+.|++|
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~---~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG---ALLN-------VLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEE-------EECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC---Ceee-------eccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 78899999995 78999999999999999322 1111 12235677888888754 59999999999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 173 (362)
++..+... ..+........ .+ ...........+.+++|+|++ .+++++.|+.|++||+++
T Consensus 177 d~~~~~~~-------~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~ 236 (425)
T 1r5m_A 177 NVISGTVM-------QHFELKETGGS---------SI---NAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE 236 (425)
T ss_dssp ETTTTEEE-------EEECCC---------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTC
T ss_pred ECCCCcEE-------EEeeccccCcc---------ce---eeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC
Confidence 99754321 11100000000 00 000001122347888999875 588899999999999999
Q ss_pred ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC
Q 044557 174 FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR 252 (362)
Q Consensus 174 ~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~ 252 (362)
++.+..+. .|...|.+++|+|++. +++++.||.|++||+.++.... .+..|..+|.+++|+|++ ++++++.|+
T Consensus 237 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~~-~l~~~~~d~ 310 (425)
T 1r5m_A 237 KTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN----CFYGHSQSIVSASWVGDD-KVISCSMDG 310 (425)
T ss_dssp SSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE----EECCCSSCEEEEEEETTT-EEEEEETTS
T ss_pred Cceeeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce----EecCCCccEEEEEECCCC-EEEEEeCCC
Confidence 88777664 7899999999999986 8899999999999998765332 345688999999999999 999999999
Q ss_pred cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCcee--------------------e
Q 044557 253 SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYT--------------------C 310 (362)
Q Consensus 253 ~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~--------------------~ 310 (362)
.|++||+.+.. .+..+..|...|.+++++++ ++++++.|+.|++|+... .. +
T Consensus 311 ~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 384 (425)
T 1r5m_A 311 SVRLWSLKQNT----LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK--LNSKSRSLYGNRDGILNPLPIPL 384 (425)
T ss_dssp EEEEEETTTTE----EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH--HHC--------------CEECCE
T ss_pred cEEEEECCCCc----EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC--CccceeeeecccccccCcccchh
Confidence 99999997533 34556788999999999864 899999999999999632 23 6
Q ss_pred eeEecCCCC--cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 311 LAVLEGHRG--PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 311 ~~~l~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+..+.+|.. .|.+++|+|++ .+|++|+.||.|++|+++
T Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 385 YASYQSSQDNDYIFDLSWNCAG---------NKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECCTTCCCCEEEEEECTTS---------SEEEEEESSSCCEEEECC
T ss_pred hhhhcCcccCCceEEEEccCCC---------ceEEEEecCceEEEEeec
Confidence 788999977 99999998664 468999999999999985
No 69
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.8e-33 Score=247.12 Aligned_cols=243 Identities=23% Similarity=0.403 Sum_probs=196.6
Q ss_pred EEeecceeEEEEEcC---ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 64 VAVGKGAVKSLVVLA---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
+..|.+.|.++.+.+ +.|++++.|++|++|++....... ......+.+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-----------------------------~~~~~~~~~ 63 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF-----------------------------GVPVRSFKG 63 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-----------------------------EEEEEEEEC
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-----------------------------cccceEEeC
Confidence 345778899998875 459999999999999985322100 011224457
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
|...|.+++|+|++++|++|+.|++|++||+++++++..+. +|...|.+++|+|++. +++++.|++|++||+...
T Consensus 64 h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--- 139 (319)
T 3frx_A 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--- 139 (319)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC---
T ss_pred CcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Confidence 99999999999999999999999999999999999888775 7999999999999987 889999999999998632
Q ss_pred ceeehhhhccccceeEEEEecC------CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEE
Q 044557 220 HSLVDVLERHNSGINALALSCD------GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCS 291 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s 291 (362)
....+.+|...|.++.|+|. +..|++++.|++|++||+.... ....+.+|...|.+++++++ ++++
T Consensus 140 --~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 140 --CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp --EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEEEECTTSSEEEE
T ss_pred --eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEEEEcCCCCEEEE
Confidence 23345679999999999984 4589999999999999997532 34567899999999999865 8999
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++.|++|++|+... .+++..+.+| ..|.+++|+|++ .+|++++ +..+++|++..
T Consensus 214 ~~~dg~i~iwd~~~--~~~~~~~~~~-~~v~~~~~sp~~---------~~la~~~-~~~i~v~~~~~ 267 (319)
T 3frx_A 214 AGKDGEIMLWNLAA--KKAMYTLSAQ-DEVFSLAFSPNR---------YWLAAAT-ATGIKVFSLDP 267 (319)
T ss_dssp EETTCEEEEEETTT--TEEEEEEECC-SCEEEEEECSSS---------SEEEEEE-TTEEEEEEETT
T ss_pred EeCCCeEEEEECCC--CcEEEEecCC-CcEEEEEEcCCC---------CEEEEEc-CCCcEEEEeCc
Confidence 99999999999643 4567777654 689999998764 4577665 45699999853
No 70
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.1e-33 Score=244.28 Aligned_cols=245 Identities=23% Similarity=0.425 Sum_probs=196.4
Q ss_pred EeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec
Q 044557 65 AVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV 142 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 142 (362)
..|...|.++.+.++ .|++++.|+.|++|++..+.. ...+..|.
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~----------------------------------~~~~~~h~ 65 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----------------------------------EKTISGHK 65 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----------------------------------EEEECCCS
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc----------------------------------chhhccCC
Confidence 346778999988765 599999999999999865321 01223588
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcce
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
..|.+++|+|++++|++|+.|+.|++||+++++++..+. .|...|.+++|+|++. +++++.||.|++||+.++..
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--- 141 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--- 141 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE---
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE---
Confidence 899999999999999999999999999999999888775 7999999999999987 88999999999999987643
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEE
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~ 299 (362)
...+..|..+|.+++|+|++.+|++++.|+.|++||+.+... .......+...+.+++++++ ++++++.|+.|+
T Consensus 142 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 142 -LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp -EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred -EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 334567889999999999999999999999999999986432 11223456677888999764 899999999999
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+|+.. ...++..+.+|...+..+.... ..+++.+|++|+.||.|++||+...
T Consensus 218 iwd~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 218 LWDYS--KGKCLKTYTGHKNEKYCIFANF------SVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EEETT--TTEEEEEECSSCCSSSCCCEEE------ECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EEECC--CCcEEEEEEecCCceEEEEEEE------EeCCCcEEEEECCCCEEEEEECCCc
Confidence 99964 3566788888887654332211 1233568999999999999998643
No 71
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-33 Score=277.71 Aligned_cols=335 Identities=10% Similarity=0.097 Sum_probs=220.0
Q ss_pred eecccCccceeeeEecC---cEEEEecCCCeEEEeecCCCCcccceeeeccc-----------eeEEeecceeEEEEEcC
Q 044557 13 TTLKGHNSYVSSLALAG---KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNN-----------NIVAVGKGAVKSLVVLA 78 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~~---~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~i~~~~ 78 (362)
.++++|.+.|.+|+|++ ..+++|+.||+| +||+.+... ...+.... .....|...|.++.+.+
T Consensus 145 ~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 145 FFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp TCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred cccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 45689999999999964 589999999999 999876431 11111000 00011235688998876
Q ss_pred c--eeEEEecCCcEEEEecCCCCCCcc------------------------cceeeeeccCCC-chhhhhccc-cc----
Q 044557 79 D--KLFSAHQDHKIRVWKINNQEPDHQ------------------------KYTRLATLPTLG-DRAIKLLMP-KN---- 126 (362)
Q Consensus 79 ~--~l~s~~~dg~i~~w~~~~~~~~~~------------------------~~~~~~~~~~~~-~~~~~~~~~-~~---- 126 (362)
+ .|++++.|++|++||++.++.... .+..+...+... +....+... ..
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence 5 599999999999999976543110 011111111100 000000000 00
Q ss_pred --cceeeee---------------------eeeEEe--eecCceeEEEEec----------CCCEEEEEECCCcEEEEEC
Q 044557 127 --HVQIRRH---------------------KTCTWV--HHVDAVSALALTK----------DETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 127 --~~~~~~~---------------------~~~~~~--~h~~~v~~~~~~~----------~~~~l~s~s~d~~i~iwd~ 171 (362)
...++.. +..... .+.+.+..+.+.+ +...+++++.|+.|++|++
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence 1111110 001111 2456777777755 3447889999999999998
Q ss_pred CCceEEEe-------ee---------------------------------ccCcccEEEEEEcCCCc-EEEEeCCCeEEE
Q 044557 172 SDFKCLES-------IT---------------------------------NAHDDAINAVALSDDGD-VYTGSADKKIKV 210 (362)
Q Consensus 172 ~~~~~~~~-------~~---------------------------------~~h~~~v~~v~~~~~~~-~~s~~~dg~i~i 210 (362)
.++..... +. .+|...+.+++|+|++. +++|+.||+|++
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl 461 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI 461 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEE
Confidence 76643221 10 12333344455678786 889999999999
Q ss_pred EeCCCCCCcce--eehhh-----hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCC-------------------
Q 044557 211 WRRSPGNKKHS--LVDVL-----ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDG------------------- 264 (362)
Q Consensus 211 w~~~~~~~~~~--~~~~~-----~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~------------------- 264 (362)
||+.++..... +...+ .+|...|.+++|+|||++|++|+.||+|++|++.....
T Consensus 462 Wd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (902)
T 2oaj_A 462 YDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRF 541 (902)
T ss_dssp EESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSC
T ss_pred EECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeec
Confidence 99987642110 11011 26889999999999999999999999999999875421
Q ss_pred ----------------------cEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCcee---eeeEec-CC
Q 044557 265 ----------------------NILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYT---CLAVLE-GH 317 (362)
Q Consensus 265 ----------------------~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~---~~~~l~-~h 317 (362)
.+..+..+.+|.+.|.+++|+++ +||+|+.|++|++||....... .+..+. +|
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 542 SLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp CGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred cccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 01235667889999999999865 9999999999999996443221 112343 99
Q ss_pred CCcEEEEEee-----ecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 318 RGPVKCLAAA-----IDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 318 ~~~v~~~~~~-----~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+.|++++|+ |++ +.+.+|++|+.|++|++||+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg------~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDG------YSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp CCCEEEEEEEEEECTTSS------SEEEEEEEEETTSEEEEEEE
T ss_pred ccceEEEEEEEEecCCCC------CcceEEEEEecCCcEEEEEE
Confidence 9999999999 553 12468999999999999998
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4e-32 Score=253.28 Aligned_cols=306 Identities=21% Similarity=0.349 Sum_probs=220.6
Q ss_pred ccceeeecccCccceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC----ceeE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA----DKLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~l~ 82 (362)
+.+++.++.+|.+.|.++.+. +.++++|+.||+|++||+.+... .. .+..|...+.++.+.. ..++
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~-------~~~~h~~~v~~l~~~~~~~~~~l~ 221 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCC--TH-------VFEGHNSTVRCLDIVEYKNIKYIV 221 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEE--EE-------EECCCSSCEEEEEEEESSSCEEEE
T ss_pred CCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcE--EE-------EECCCCCccEEEEEecCCCCCEEE
Confidence 456888999999999999996 44999999999999999875421 11 1223567788887752 4599
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|++|++||+............ .........+.... .......+|...+.++ ++++++|++|+.
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEE-------HDYPLVFHTPEENP----YFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp EEETTSCEEEEECCCCCCC-------------CCSSEEESCGGGCT----TEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred EEcCCCcEEEeeCCCCccccccccc-------CCcceEeeccCCCe----EEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 9999999999999765432110000 00000000000000 0112334677777776 677899999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
|+.|++||+++++++..+. +|...|.+++|+|++. +++++.||.|++||+.++. ....+..|...|.+++|+
T Consensus 289 d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~-- 361 (464)
T 3v7d_B 289 DNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLS-- 361 (464)
T ss_dssp TSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEC--
T ss_pred CCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEEc--
Confidence 9999999999999888775 7999999999999986 8899999999999998764 344556799999999997
Q ss_pred CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeE-ecCCCCc
Q 044557 242 GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAV-LEGHRGP 320 (362)
Q Consensus 242 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~-l~~h~~~ 320 (362)
+.+|++++.||.|++||+.+.... ......+...+.++...+.++++++ |+.|++|+... .+++.. +.+|...
T Consensus 362 ~~~l~s~s~dg~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~--g~~~~~~~~~~~~~ 435 (464)
T 3v7d_B 362 DKFLVSAAADGSIRGWDANDYSRK---FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS--GKLVHANILKDADQ 435 (464)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEE---EEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT--CCEEESCTTTTCSE
T ss_pred CCEEEEEeCCCcEEEEECCCCcee---eeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC--CcEEehhhccCCCc
Confidence 589999999999999999864421 1111222233344445566888888 99999999644 455654 6789999
Q ss_pred EEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 321 VKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++++|+. ..++++++.||.+.+|-+++
T Consensus 436 v~~v~~~~----------~~l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 436 IWSVNFKG----------KTLVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp EEEEEEET----------TEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEecC----------CEEEEEEEeCCeEEEEEeec
Confidence 99999952 25788888888877665543
No 73
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.4e-33 Score=244.81 Aligned_cols=209 Identities=21% Similarity=0.300 Sum_probs=171.6
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCC--ceEEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD--FKCLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRR 213 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~ 213 (362)
.+|.+.|.+++|+|++++||+|+.|++|+|||+.. .+++..+. +|..+|.+++|+++ +. +++++.||+|++||+
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 46999999999999999999999999999999974 34555554 89999999999863 54 889999999999999
Q ss_pred CCCCCcceeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC----
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---- 287 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---- 287 (362)
.++... ....+..|..+|.+++|+|+ +.+|++++.|++|++||++...... ...+.+|...|.+++|+++
T Consensus 85 ~~~~~~--~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 85 ENGRWS--QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp SSSCBC--CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCCC---
T ss_pred CCCceE--EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee--eeeeecccCccceEeecCCcccc
Confidence 875321 22334578999999999997 8999999999999999997643211 1245789999999999763
Q ss_pred -----------eEEEeeCCCcEEEeeCCCCc--eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 288 -----------LVCSGSADKTIRIWRGIDRN--YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 288 -----------~~~s~s~D~~i~~W~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
+|++|+.|++|++|+..... ..+...+.+|...|.+++|+|++. .+.+|+|||.|++|+||
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~------~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL------LRSYMASVSQDRTCIIW 234 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS------SSEEEEEEETTSCEEEE
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC------CceEEEEEECCCcEEEE
Confidence 89999999999999964322 346678999999999999988631 13679999999999999
Q ss_pred eccc
Q 044557 355 QISF 358 (362)
Q Consensus 355 ~~~~ 358 (362)
|+..
T Consensus 235 d~~~ 238 (297)
T 2pm7_B 235 TQDN 238 (297)
T ss_dssp EESS
T ss_pred EeCC
Confidence 9864
No 74
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=254.88 Aligned_cols=318 Identities=14% Similarity=0.239 Sum_probs=208.3
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCccc---ceeeeccceeEEeec------------ceeEEEEEcCc
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSEL---DQEFLSNNNIVAVGK------------GAVKSLVVLAD 79 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~---~~~~~~~~~~~~~~~------------~~v~~i~~~~~ 79 (362)
.|.+.|++++|+ +++||+|+.||.|++||+....... ..++. ....+..|. ..|.++.+.++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYN-VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEE-EEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccccee-EecccccccccccccccccccCceEEEEEcCC
Confidence 378999999995 7899999999999999987543100 00000 011222344 66888888764
Q ss_pred ----eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCch------hhhhcccc---ccceeeeeeeeEE-eeecCce
Q 044557 80 ----KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDR------AIKLLMPK---NHVQIRRHKTCTW-VHHVDAV 145 (362)
Q Consensus 80 ----~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~~~-~~h~~~v 145 (362)
.+++++.|++|++|++.......... .+....+. ...+..+. ....+.......+ .+|...|
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGY----NLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECC----SCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred CCcceEEEeCCCCeEEEEecccccCCccee----cccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 49999999999999986432110000 00000000 00000000 0000001111122 3689999
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEECCC-ceEEEee------eccCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCC
Q 044557 146 SALALTKDETLLYSVSWDRTIKIWRTSD-FKCLESI------TNAHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~------~~~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~ 216 (362)
.+++|+|++++|++| .|+.|++||++. .+.+..+ ...|...|.+++|+|++ . +++++.||.|++||+.++
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 999999999999998 799999999984 4444432 34788999999999997 5 889999999999999876
Q ss_pred CCcceeehhhhcccc------------ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccce------
Q 044557 217 NKKHSLVDVLERHNS------------GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKS------ 278 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~------------~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~------ 278 (362)
.........+..|.. +|.+++|+|+|++|++++. +.|++||+..... .+..+.+|...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~---~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR---PVETYQVHEYLRSKLCS 335 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS---CSCCEESCGGGTTTHHH
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc---ccceeeccccccccccc
Confidence 542111223344544 8999999999999999999 9999999976222 22345566532
Q ss_pred ---------eEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecC-------------------------------
Q 044557 279 ---------ILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEG------------------------------- 316 (362)
Q Consensus 279 ---------v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~------------------------------- 316 (362)
+..++|+++ ++++++.|+.|++|+...... + .+.+
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD--I-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS 412 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE--E-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc--e-eeeecccccccccccCCccccccCCcccccccccc
Confidence 223777754 899999999999999754322 1 2332
Q ss_pred --CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 317 --HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 317 --h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+...|..++|+|++ .+||+|+.|+ +.+|.-.
T Consensus 413 ~~~~~~i~~~~~~p~~---------~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 413 LDFNKKILHTAWHPKE---------NIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCTTSCCCEEEECSSS---------SEEEEECSSC-EEEEECC
T ss_pred cccCCceeEEEECCCC---------CEEEEEecce-eeeeccc
Confidence 34567888887764 4688888765 7788653
No 75
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-34 Score=268.72 Aligned_cols=231 Identities=14% Similarity=0.087 Sum_probs=174.8
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC------
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD------ 153 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------ 153 (362)
.+++++.|++|++|++..++... .....+.+|.+.|.+++|+|+
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~------------------------------~~~~~l~~~~~~V~~v~wsp~~~~~~~ 224 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHC------------------------------VKVQTIVHSFGEVWDLKWHEGCHAPHL 224 (524)
T ss_dssp -------CEEEEEEEEETTTCCE------------------------------EEEEEEEECCCSEEEEEECSSCCCSSS
T ss_pred hhccCCCCceEEEEEccCCCCCc------------------------------eEEEEEEecCCcEEEEEECCCCCCCCC
Confidence 36789999999999986543110 001123457788999999996
Q ss_pred CCEEEEEECCCcEEEEECCCceEE-----------EeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCccee
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCL-----------ESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~-----------~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
+.+||+++.|++|+|||+..++.. ..+ .+|...|.+++|++++.|++|+.||+|++||+.++...
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~--- 300 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVP--- 300 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSC---
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCc---
Confidence 579999999999999999765321 123 46889999999998888999999999999999865322
Q ss_pred ehhhhccccceeEE--EEecCC-CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccc--eeEEEEEeCC--eEEEeeCC
Q 044557 223 VDVLERHNSGINAL--ALSCDG-SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK--SILCMAVVSD--LVCSGSAD 295 (362)
Q Consensus 223 ~~~~~~h~~~v~~i--~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~--~~~s~s~D 295 (362)
...+..|..+|.+| +|+|+| .+|++||.|++|++||+++..... .+.+|.. .|.+++|+++ .+++++.|
T Consensus 301 ~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~----~~~~~~~~~~v~~v~fsp~~~~l~s~~~d 376 (524)
T 2j04_B 301 SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK----TTVSRFRGSNLVPVVYCPQIYSYIYSDGA 376 (524)
T ss_dssp SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC----EEEEECSCCSCCCEEEETTTTEEEEECSS
T ss_pred eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc----ccccccccCcccceEeCCCcCeEEEeCCC
Confidence 22356799999999 568888 899999999999999997643221 2334543 4788999875 79999999
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
++|++|+.. ...++.++.+|.+.|++++|+|++ .+|+|||.|++|++||+...
T Consensus 377 ~tv~lwd~~--~~~~~~~l~gH~~~V~sva~Sp~g---------~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 377 SSLRAVPSR--AAFAVHPLVSRETTITAIGVSRLH---------PMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp SEEEEEETT--CTTCCEEEEECSSCEEEEECCSSC---------CBCEEEETTTEEECCBSCSS
T ss_pred CcEEEEECc--ccccceeeecCCCceEEEEeCCCC---------CeEEEEECCCEEEEEechHh
Confidence 999999964 345567888999999999998764 46899999999999998543
No 76
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=245.49 Aligned_cols=291 Identities=14% Similarity=0.218 Sum_probs=221.2
Q ss_pred eccceeeecccCccceeeeEec-----CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA-----GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-- 79 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~-----~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (362)
.+.+.+..+++|.+.|++++|+ |++|++|+.||+|++||+.+...... ..+..|...+.++.+.++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~ 99 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-------KAQQMHTGPVLDVCWSDDGS 99 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------EEEEECSSCEEEEEECTTSS
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------EEeccccCCEEEEEECcCCC
Confidence 4556788899999999999995 47999999999999999875221111 223446778999988765
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE--ecCCCEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL--TKDETLL 157 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l 157 (362)
.|++++.||.|++||++.... .....|...|.+++| +|++++|
T Consensus 100 ~l~s~~~dg~v~iwd~~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~~~l 144 (368)
T 3mmy_A 100 KVFTASCDKTAKMWDLSSNQA-----------------------------------IQIAQHDAPVKTIHWIKAPNYSCV 144 (368)
T ss_dssp EEEEEETTSEEEEEETTTTEE-----------------------------------EEEEECSSCEEEEEEEECSSCEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCc-----------------------------------eeeccccCceEEEEEEeCCCCCEE
Confidence 599999999999999875321 012358889999999 8999999
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~ 237 (362)
++++.|+.|++||+++++++..+. .+ ..+.++.+.++ .+++++.|+.+++|++........... ..+...+.++.
T Consensus 145 ~~~~~dg~i~vwd~~~~~~~~~~~-~~-~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 219 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSSNPMMVLQ-LP-ERCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIE--SPLKHQHRCVA 219 (368)
T ss_dssp EEEETTSEEEEECSSCSSCSEEEE-CS-SCEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECC--CSCSSCEEEEE
T ss_pred EEccCCCcEEEEECCCCcEEEEEe-cC-CCceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhcc--ccccCCCceEE
Confidence 999999999999999988877765 33 35666666643 578888999999999976543222222 22344566677
Q ss_pred EecCCCE----EEEEcCCCcEEEEeccCCCCcEEEEEeecCccc------------eeEEEEEeCC--eEEEeeCCCcEE
Q 044557 238 LSCDGSV----LYSGACDRSIIVWEKEEDDGNILVVGALRGHTK------------SILCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 238 ~s~~~~~----l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~------------~v~~~~~~~~--~~~s~s~D~~i~ 299 (362)
+.++... +++++.|+.|++|++...... .....+.+|.. .|.+++++++ ++++++.|+.|+
T Consensus 220 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~ 298 (368)
T 3mmy_A 220 IFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS 298 (368)
T ss_dssp EEECTTSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEE
T ss_pred EcccCCCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEE
Confidence 7666554 999999999999999764320 11223455655 6999999865 899999999999
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+|+.. ...++..+.+|...|.+++|+|++ .+|++||.|+..+.|++
T Consensus 299 iwd~~--~~~~~~~~~~~~~~v~~~~~s~~g---------~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 299 FWDKD--ARTKLKTSEQLDQPISACCFNHNG---------NIFAYASSYDWSKGHEF 344 (368)
T ss_dssp EEETT--TTEEEEECCCCSSCEEEEEECTTS---------SCEEEEECCCSTTCGGG
T ss_pred EEECC--CCcEEEEecCCCCCceEEEECCCC---------CeEEEEecccccccccc
Confidence 99964 456788999999999999998765 45889988886665554
No 77
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.8e-32 Score=260.93 Aligned_cols=274 Identities=19% Similarity=0.249 Sum_probs=209.8
Q ss_pred ceeeecccCccc-eeeeEecC----cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 10 HCLTTLKGHNSY-VSSLALAG----KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 10 ~~~~tl~gH~~~-V~~l~~~~----~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
++...|.+|.+. |.+++|+. ++|++|+.||+|++||+.+........ ......+..+...+.++.+.++ .++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE-VNVKSEFQVLAGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE-EEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccc-ccccchhhcccccEEEEEEeCCCCEEE
Confidence 678889999999 99999954 799999999999999985421000000 0001122335678889988765 588
Q ss_pred EEecC----CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EE
Q 044557 83 SAHQD----HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LL 157 (362)
Q Consensus 83 s~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 157 (362)
+++.+ +.|.+|+.. . . ...+..|...|.+++|+|+++ +|
T Consensus 133 ~~~~~~~~~~~v~~~d~~--~-------~---------------------------~~~~~~~~~~v~~~~~~~~~~~~l 176 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWDSG--N-------S---------------------------LGEVSGHSQRINACHLKQSRPMRS 176 (615)
T ss_dssp EEECCSSCSEEEEETTTC--C-------E---------------------------EEECCSCSSCEEEEEECSSSSCEE
T ss_pred EeccCCCCccEEEEEECC--C-------c---------------------------ceeeecCCccEEEEEECCCCCcEE
Confidence 88877 688888732 1 0 011235788999999999998 89
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcc---cEEEEEEcCC-Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccc
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDD---AINAVALSDD-GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~---~v~~v~~~~~-~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
++++.|+.|++||+.+++.+..+. .|.. .|.+++|+|+ +. +++++.||.|++||+.++.....+......|..+
T Consensus 177 ~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 255 (615)
T 1pgu_A 177 MTVGDDGSVVFYQGPPFKFSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 255 (615)
T ss_dssp EEEETTTEEEEEETTTBEEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred EEEeCCCcEEEEeCCCcceeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence 999999999999999999888775 6888 9999999999 86 8889999999999998765332221101178999
Q ss_pred eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCc----cceeEEEEE-eCCeEEEeeCCCcEEEeeCCCCc
Q 044557 233 INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGH----TKSILCMAV-VSDLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h----~~~v~~~~~-~~~~~~s~s~D~~i~~W~~~~~~ 307 (362)
|.+++|+ ++.+|++++.|+.|++||+.+.+ .+..+..+ ...+.++.+ .++++++++.|+.|++|+.. .
T Consensus 256 v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~--~ 328 (615)
T 1pgu_A 256 IFALSWL-DSQKFATVGADATIRVWDVTTSK----CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG--H 328 (615)
T ss_dssp EEEEEES-SSSEEEEEETTSEEEEEETTTTE----EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT--E
T ss_pred eEEEEEc-CCCEEEEEcCCCcEEEEECCCCc----EEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC--C
Confidence 9999999 99999999999999999997643 23334444 356667766 56699999999999999953 4
Q ss_pred eeeeeEecCCCCcEEEEEeeec
Q 044557 308 YTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
..++..+.+|...|.+++| |+
T Consensus 329 ~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 329 DEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp EEEEEEECCCSSCEEEEET-TT
T ss_pred CcEEEEEeCCCCCEEEEEe-cC
Confidence 6778889999999999988 54
No 78
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-32 Score=248.42 Aligned_cols=252 Identities=13% Similarity=0.180 Sum_probs=184.0
Q ss_pred eecccCccceeeeEecCcEEEEe-----------cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce-
Q 044557 13 TTLKGHNSYVSSLALAGKFLYTG-----------SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK- 80 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~~~~l~t~-----------s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~- 80 (362)
.+|.+|...|.+++++++.+++| +.|+++|+|++....................+...+.++.+++|.
T Consensus 67 ~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~ 146 (365)
T 4h5i_A 67 FALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT 146 (365)
T ss_dssp EECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS
T ss_pred EEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC
Confidence 35889999999999988877765 457889999876543221111000000001123346778888764
Q ss_pred -eE--EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 81 -LF--SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 81 -l~--s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
++ +++.|++|++||++..... .. ..|...|.+++|+||+++|
T Consensus 147 ~la~as~~~d~~i~iwd~~~~~~~----------------------------------~~-~~~~~~V~~v~fspdg~~l 191 (365)
T 4h5i_A 147 VAAIASSKVPAIMRIIDPSDLTEK----------------------------------FE-IETRGEVKDLHFSTDGKVV 191 (365)
T ss_dssp CEEEEESCSSCEEEEEETTTTEEE----------------------------------EE-EECSSCCCEEEECTTSSEE
T ss_pred EEEEEECCCCCEEEEeECCCCcEE----------------------------------EE-eCCCCceEEEEEccCCceE
Confidence 44 4557999999998653210 01 2466789999999999999
Q ss_pred EEEECCCcEEEEECCCceEE-EeeeccCcccEEEEEEcCCCc-EEEEeCCC----eEEEEeCCCCCCcceeehhhhcccc
Q 044557 158 YSVSWDRTIKIWRTSDFKCL-ESITNAHDDAINAVALSDDGD-VYTGSADK----KIKVWRRSPGNKKHSLVDVLERHNS 231 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~-~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg----~i~iw~~~~~~~~~~~~~~~~~h~~ 231 (362)
++++.| .+++|+..+++.+ ......|...|.+++|+|++. +++++.|+ .+++|+.............+..|..
T Consensus 192 ~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 270 (365)
T 4h5i_A 192 AYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK 270 (365)
T ss_dssp EEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS
T ss_pred Eeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC
Confidence 999855 5666666665543 344456888999999999997 77888776 6888987665432222345567889
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
+|++++|+|||++|++|+.|++|++||+++.+ .+.. +.+|...|++++|+++ +|+|||.|++||||++.
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~----~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKDLS----MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTE----EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCCCc----EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 99999999999999999999999999997643 2333 5799999999999876 89999999999999963
No 79
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.3e-32 Score=282.57 Aligned_cols=202 Identities=22% Similarity=0.327 Sum_probs=169.5
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~ 218 (362)
.|...+.+++|+|+++++++++.|+.|++||+.++..+..+. +|...|.+++|+|++. +++++.||.|++|++.....
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccce
Confidence 578899999999999999999999999999999998887775 7999999999999997 88999999999998532000
Q ss_pred ---------------------------------------------------------------------------cceee
Q 044557 219 ---------------------------------------------------------------------------KHSLV 223 (362)
Q Consensus 219 ---------------------------------------------------------------------------~~~~~ 223 (362)
.....
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~ 996 (1249)
T 3sfz_A 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 996 (1249)
T ss_dssp CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence 00111
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEee
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWR 302 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~ 302 (362)
..+..|..+|++++|+|+|++|++++.|+.|++||+.++. .....+|...|.++.+.++ .+++++.|++|++|+
T Consensus 997 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-----YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE-----EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 2234688899999999999999999999999999997642 1245689999999999865 899999999999999
Q ss_pred CCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 303 GIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 303 ~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
... ..++..+.+|...|.+++|+|++ .+|++|+.|++|++||+..
T Consensus 1072 ~~~--~~~~~~~~~~~~~v~~~~~s~d~---------~~l~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A 1072 VIT--GRIERDFTCHQGTVLSCAISSDA---------TKFSSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp TTT--TCCCEEEECCSSCCCCEEECSSS---------SSCEEECCSSCCCEECSSS
T ss_pred CCC--CceeEEEcccCCcEEEEEECCCC---------CEEEEEcCCCcEEEEECCC
Confidence 643 45678899999999999998765 3589999999999999853
No 80
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-31 Score=237.26 Aligned_cols=280 Identities=16% Similarity=0.244 Sum_probs=214.7
Q ss_pred CccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVW 93 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w 93 (362)
|.++|.+++++ |++++++..++.+.+|+..... . ......|...+.++.+.++ .+++++ ||.|++|
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw 77 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----R----QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVW 77 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----E----EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----c----cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEE
Confidence 56788999984 7889888888877777543211 0 0111235678888988765 467777 9999999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 173 (362)
++........ .. ......|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 78 ~~~~~~~~~~----~~-------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 78 DISHPGNKSP----VS-------------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp ETTSTTCCSC----SE-------------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred ECCCCCceee----ee-------------------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 9975432110 00 001124778899999999999999999999999999988
Q ss_pred ce--EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC
Q 044557 174 FK--CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 174 ~~--~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~ 250 (362)
++ ....+ ..|...+.+++|+|++. +++++.||.|++||+.++. ....+..|..+|.+++|+|++.+|++++.
T Consensus 129 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 129 PTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT----LVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp C--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeeec-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc----eeeeeecccCceEEEEECCCCCEEEEEec
Confidence 76 33444 46888999999999987 7899999999999998753 33345678999999999999999999999
Q ss_pred CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeee
Q 044557 251 DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 251 d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~ 328 (362)
|+.|++||+++.+. ...+ .|...+.+++++++ ++++++.|+.|++|+..... ...+.+|...|.+++|+|
T Consensus 204 dg~i~~~d~~~~~~----~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 204 DNTVRSWDLREGRQ----LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAY 275 (337)
T ss_dssp TSEEEEEETTTTEE----EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEEEECT
T ss_pred CCcEEEEECCCCce----Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEEEECC
Confidence 99999999976431 2222 36778999999764 89999999999999975432 346789999999999987
Q ss_pred cCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 329 DNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 329 ~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++ .+|++++.||.|++||+..
T Consensus 276 ~~---------~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 276 CG---------KWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp TS---------SEEEEEETTSEEEEEETTT
T ss_pred CC---------CEEEEecCCCcEEEEECCC
Confidence 54 4689999999999999864
No 81
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=253.59 Aligned_cols=267 Identities=8% Similarity=0.068 Sum_probs=196.8
Q ss_pred ccCccceeeeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEE
Q 044557 16 KGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVW 93 (362)
Q Consensus 16 ~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w 93 (362)
+.-...|.+|+| +|+++||+|.|++|| |.+... .. ..|...+.++.++++. +++.|
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-----~l-------~gh~~~v~~V~FsPdg--------~~~~~ 69 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK-----DI-------NCNSKNLFHVKEFPLE--------FENKL 69 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS-----CC-------SSBGGGTEEEEEECCC--------CCCTT
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc-----ee-------cCCCccEEEEEECCCC--------CcceE
Confidence 455789999999 489999999999999 643321 11 2356778888776655 44444
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCC
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD 173 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 173 (362)
++...+... .. + ..|.+.|.+++|+|+|+.||+++.||.|++||.+.
T Consensus 70 ~~~~~~~~~-----~~---------------------------~-~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~ 116 (588)
T 2j04_A 70 DFELAQQNG-----LL---------------------------N-SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK 116 (588)
T ss_dssp TTSCCCSSC-----SS---------------------------T-TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE
T ss_pred EEEeCCCce-----Ee---------------------------e-cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc
Confidence 443322100 00 0 12457899999999999999999999999999654
Q ss_pred ceEEEeeeccCcc-----cEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc---eeehhh----hccccceeEEEEec
Q 044557 174 FKCLESITNAHDD-----AINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH---SLVDVL----ERHNSGINALALSC 240 (362)
Q Consensus 174 ~~~~~~~~~~h~~-----~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~---~~~~~~----~~h~~~v~~i~~s~ 240 (362)
++..+. |.. .+.+++|+|+|+ +++|+.||+|++||+.++.... ..+..+ .+|...|.+++|+|
T Consensus 117 --~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP 192 (588)
T 2j04_A 117 --MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE 192 (588)
T ss_dssp --EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred --eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence 555554 444 599999999997 8999999999999998764200 112232 56888999999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCCcEEEEEee-cCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCC
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDGNILVVGAL-RGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG 319 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~ 319 (362)
|| +++++.|++|++|++..+... .....+ .+|...|.+++|++..+++++ |++|++|+..... ......||.+
T Consensus 193 dg--Laass~D~tVrlWd~~~~~~~-~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~--~~~~~~gh~~ 266 (588)
T 2j04_A 193 DV--LVAALSNNSVFSMTVSASSHQ-PVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYS--ISSLKTGSLE 266 (588)
T ss_dssp TE--EEEEETTCCEEEECCCSSSSC-CCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTE--EEEEECSCCS
T ss_pred Cc--EEEEeCCCeEEEEECCCCccc-cceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCe--EEEEEcCCCc
Confidence 99 889999999999999764421 112234 478889999999977888887 6999999965432 2122338999
Q ss_pred cEEEEEe--eecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 320 PVKCLAA--AIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 320 ~v~~~~~--~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.|..++| +|++ ..|++++.||+ |+|...
T Consensus 267 ~V~~va~~~s~d~---------~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 267 NFHIIPLNHEKES---------TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCEEEETTCSSC---------EEEEECSSCEE-EEEESS
T ss_pred eEEEEEeeeCCCC---------CEEEEEcCCCC-EEEeec
Confidence 9999999 6553 57999999999 999874
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.4e-31 Score=242.65 Aligned_cols=287 Identities=17% Similarity=0.240 Sum_probs=211.1
Q ss_pred eeeeEecCc---EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC---ceeEEEecCCcEEEEec
Q 044557 22 VSSLALAGK---FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA---DKLFSAHQDHKIRVWKI 95 (362)
Q Consensus 22 V~~l~~~~~---~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w~~ 95 (362)
...++++++ ++++++.||.|++|++...... ......+..|.+.|.++.+.+ +.|++++.||+|++|++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence 344566554 3456899999999998542211 011112334678899999875 35999999999999999
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCC-CEEEEEECCCcEEEEECCCc
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDE-TLLYSVSWDRTIKIWRTSDF 174 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~ 174 (362)
......... ......+.+|...|.+++|+|++ ++|++++.|+.|++||++++
T Consensus 112 ~~~~~~~~~---------------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 164 (402)
T 2aq5_A 112 PDGGLVLPL---------------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164 (402)
T ss_dssp CTTCCSSCB---------------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT
T ss_pred cCCCCcccc---------------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC
Confidence 765321100 00112345688999999999998 69999999999999999999
Q ss_pred eEEEeee-ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhh-hccccc-eeEEEEecCCCEEEEE--
Q 044557 175 KCLESIT-NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVL-ERHNSG-INALALSCDGSVLYSG-- 248 (362)
Q Consensus 175 ~~~~~~~-~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~h~~~-v~~i~~s~~~~~l~s~-- 248 (362)
+++..+. ..|...|.+++|+|++. +++++.||.|++||+.++.. ...+ ..|... +.++.|+|++.+|++|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 240 (402)
T 2aq5_A 165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV----VAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 (402)
T ss_dssp EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE----EEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce----eeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence 9888774 57999999999999986 88999999999999987643 2233 456655 8999999999999999
Q ss_pred -cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eE-EEeeCCCcEEEeeCCCCc--eeeeeEecCCCCcEE
Q 044557 249 -ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LV-CSGSADKTIRIWRGIDRN--YTCLAVLEGHRGPVK 322 (362)
Q Consensus 249 -~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~-~s~s~D~~i~~W~~~~~~--~~~~~~l~~h~~~v~ 322 (362)
+.|+.|++||+.......... ...|...+.++.|+++ ++ ++++.|+.|++|+..... ...+..+. |...|.
T Consensus 241 ~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~ 317 (402)
T 2aq5_A 241 RMSERQVALWDTKHLEEPLSLQ--ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQR 317 (402)
T ss_dssp TTCCEEEEEEETTBCSSCSEEE--ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCS
T ss_pred CCCCceEEEEcCccccCCceEE--eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCccc
Confidence 899999999998754322221 2246677899999865 55 567789999999975433 22333333 669999
Q ss_pred EEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 323 CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+++|+|++. ++++ .|+.+++|++..
T Consensus 318 ~~~~sp~~~---------~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 318 GMGYMPKRG---------LEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEEECCGGG---------SCGG--GTEEEEEEEEET
T ss_pred ceEEecccc---------ccee--cceeEEEEEcCC
Confidence 999988753 3443 567999999853
No 83
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.2e-33 Score=245.64 Aligned_cols=211 Identities=21% Similarity=0.286 Sum_probs=169.6
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce--EEEeeeccCcccEEEEEEcCC--C-cEEEEeCCCeEEEEeC
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK--CLESITNAHDDAINAVALSDD--G-DVYTGSADKKIKVWRR 213 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~--~-~~~s~~~dg~i~iw~~ 213 (362)
.+|.+.|.+++|+|++++||+|+.|++|+|||+++++ ++..+ .+|..+|.+++|+++ + .|++++.|++|++||+
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 4799999999999999999999999999999998764 34445 489999999999853 4 4999999999999999
Q ss_pred CCCCCcceeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC----
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---- 287 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---- 287 (362)
.++... ....+.+|..+|.+++|+|+ +.+|++|+.|++|++||+.... .......+.+|...|.+++|+++
T Consensus 89 ~~~~~~--~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 89 ENGTWE--KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp SSSCCC--EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-CEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred CCCcce--EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-CcceeeeeccccCCcceEEEccccCCc
Confidence 865321 23345679999999999998 7899999999999999987542 22233456789999999888753
Q ss_pred ---------------eEEEeeCCCcEEEeeCCCC-ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcE
Q 044557 288 ---------------LVCSGSADKTIRIWRGIDR-NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 288 ---------------~~~s~s~D~~i~~W~~~~~-~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i 351 (362)
++++|+.|++|++|+.... ...++..+.+|...|.+++|+|++. ..+.+|+|||.|++|
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~-----~~~~~las~s~D~~v 240 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG-----LPTSTIASCSQDGRV 240 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS-----CSCCEEEEEETTCEE
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC-----CCCceEEEEcCCCeE
Confidence 7999999999999997432 2456788999999999999998642 113579999999999
Q ss_pred EEEeccc
Q 044557 352 KVWQISF 358 (362)
Q Consensus 352 ~~W~~~~ 358 (362)
++|++..
T Consensus 241 ~iw~~~~ 247 (316)
T 3bg1_A 241 FIWTCDD 247 (316)
T ss_dssp EEEECSS
T ss_pred EEEEccC
Confidence 9999864
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-32 Score=269.13 Aligned_cols=254 Identities=20% Similarity=0.311 Sum_probs=200.9
Q ss_pred eeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCc
Q 044557 12 LTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHK 89 (362)
Q Consensus 12 ~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~ 89 (362)
..++.||.+.|++++|+ +++|++|+.||+|++||+..... ..
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~------------------------------------~~ 45 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH------------------------------------KL 45 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE------------------------------------EE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC------------------------------------cc
Confidence 46789999999999995 78999999999999998542100 00
Q ss_pred EEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecC--CCEEEEEECCCcEE
Q 044557 90 IRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKD--ETLLYSVSWDRTIK 167 (362)
Q Consensus 90 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~i~ 167 (362)
+ ..+.+|.+.|.+++|+|+ +++|++|+.||.|+
T Consensus 46 ~---------------------------------------------~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 46 I---------------------------------------------DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp E---------------------------------------------EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred c---------------------------------------------eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 0 011247788999999988 99999999999999
Q ss_pred EEECCCce--EEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec--
Q 044557 168 IWRTSDFK--CLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-- 240 (362)
Q Consensus 168 iwd~~~~~--~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-- 240 (362)
+||+.+++ .+..+ ..|...|.+++|+|+ +. +++++.||.|++||+........ ..+..|..+|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~--~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 81 IWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--IIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC--EEEECCSSCEEEEEECCCC
T ss_pred EEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce--eEeecCCCceEEEEecCcc
Confidence 99999886 44444 479999999999998 65 88999999999999987643222 23457899999999999
Q ss_pred -----------CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-----eEEEeeCCCcEEEeeCC
Q 044557 241 -----------DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-----LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 241 -----------~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~s~s~D~~i~~W~~~ 304 (362)
++.+|++|+.||.|++||+............+.+|...|.+++|+++ ++++++.||.|++|+..
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 58999999999999999998766555667778899999999999754 79999999999999965
Q ss_pred CCcee---eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 305 DRNYT---CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 305 ~~~~~---~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..... ......+|...|++++|+|++ .+|++|+.||.|++|++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg---------~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSG---------NVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSSCCBCCBSSSSCCSSCCCCEEECTTT---------CCEEEECSSSCEECCBCCS
T ss_pred CCCCcceeEEeccCCCCCceEEEEEcCCC---------CEEEEEcCCCEEEEEecCC
Confidence 43211 233455799999999998764 3589999999999999873
No 85
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.6e-31 Score=259.13 Aligned_cols=248 Identities=23% Similarity=0.399 Sum_probs=198.4
Q ss_pred eEEeecceeEEEEEcC---ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEe
Q 044557 63 IVAVGKGAVKSLVVLA---DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWV 139 (362)
Q Consensus 63 ~~~~~~~~v~~i~~~~---~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (362)
.+..|.+.|.++.+.+ +.|++++.|++|++|++........ .....+.
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~-----------------------------~~~~~~~ 427 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG-----------------------------VAQRRLT 427 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC-----------------------------EEEEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc-----------------------------cccceec
Confidence 4566888999998864 3599999999999999865331100 0112345
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCC
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~ 218 (362)
+|...|.+++|+|++++|++|+.|++|+|||+.+++++..+. +|...|.+++|+|++. +++++.|++|++||.... .
T Consensus 428 ~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~ 505 (694)
T 3dm0_A 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-C 505 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-E
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-c
Confidence 799999999999999999999999999999999998888775 7999999999999986 899999999999997543 2
Q ss_pred cceeehhhhccccceeEEEEecCC--CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeC
Q 044557 219 KHSLVDVLERHNSGINALALSCDG--SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSA 294 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~ 294 (362)
...+.....+|...|.+++|+|++ ..|++++.|++|++||+.... ....+.+|...|.+++++++ ++++++.
T Consensus 506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK----LRSTLAGHTGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 222333345788999999999987 589999999999999997643 34567899999999999865 8999999
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
|++|++||... ..++..+.. ...|.+++|+|++ .+|+++ .|+.|++||+..
T Consensus 582 Dg~i~iwd~~~--~~~~~~~~~-~~~v~~~~~sp~~---------~~l~~~-~~~~i~iwd~~~ 632 (694)
T 3dm0_A 582 DGVVLLWDLAE--GKKLYSLEA-NSVIHALCFSPNR---------YWLCAA-TEHGIKIWDLES 632 (694)
T ss_dssp TSBCEEEETTT--TEEEECCBC-SSCEEEEEECSSS---------SEEEEE-ETTEEEEEETTT
T ss_pred CCeEEEEECCC--CceEEEecC-CCcEEEEEEcCCC---------cEEEEE-cCCCEEEEECCC
Confidence 99999999643 455666654 4679999998763 355554 577899999864
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-32 Score=247.14 Aligned_cols=247 Identities=15% Similarity=0.119 Sum_probs=185.2
Q ss_pred eecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC
Q 044557 66 VGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD 143 (362)
Q Consensus 66 ~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 143 (362)
.+.+.|.++.+.++ .|++++.|+.|++|++...... . ...+.+|..
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~-----~---------------------------~~~~~~h~~ 56 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK-----H---------------------------ARTFSDHDK 56 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE-----E---------------------------CCCBCCCSS
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceE-----E---------------------------EEEEecCCc
Confidence 34567888888764 5888999999999998643100 0 011235888
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCce---EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFK---CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
.|.+++|+|++++|++++.|+.|++||+.+++ ....+ ..|...|.+++|+|++. +++++.|+.|++||+.++...
T Consensus 57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 99999999999999999999999999998876 44444 36899999999999986 889999999999999876421
Q ss_pred ceeehhhhc-cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC--------------CcEEEEEeecCccceeEEEEE
Q 044557 220 HSLVDVLER-HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD--------------GNILVVGALRGHTKSILCMAV 284 (362)
Q Consensus 220 ~~~~~~~~~-h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~h~~~v~~~~~ 284 (362)
.....+.. |...|.+++|+|++++|++++.|+.|++||+.... .....+..+ +|...|.+++|
T Consensus 136 -~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 213 (377)
T 3dwl_C 136 -WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF 213 (377)
T ss_dssp -CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE
T ss_pred -eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE
Confidence 12233445 89999999999999999999999999999985321 113345555 89999999999
Q ss_pred eCC--eEEEeeCCCcEEEeeCCCCce--eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 285 VSD--LVCSGSADKTIRIWRGIDRNY--TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 285 ~~~--~~~s~s~D~~i~~W~~~~~~~--~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+++ ++++++.|+.|++|+...... .++..+.+|...|.+++|+|++ .+|++|+.|+.+ +|+..
T Consensus 214 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES---------AIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT---------EEEEEESSSSEE-EECCC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC---------CEEEEEcCCcEE-EEEeC
Confidence 865 899999999999999754322 2377889999999999999864 578888877666 66654
No 87
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.2e-31 Score=245.06 Aligned_cols=232 Identities=14% Similarity=0.109 Sum_probs=163.0
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-------
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK------- 152 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------- 152 (362)
.+++++.|++|++|+++.++.... .....+.+|.+.|.+++|+|
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~-----------------------------~~~~~~~gH~~~v~~v~~~p~~~~~~~ 153 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQ-----------------------------HVLGGKSGHHNFVNDIDIADVYSADNR 153 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEE-----------------------------EEECTTTSCSSCEEEEEEEEEECTTCS
T ss_pred EEEEEeCCCcEEEEECCCCcccee-----------------------------eeecccCCCCCceEEEEEccccccccC
Confidence 589999999999999875431100 00011236999999999998
Q ss_pred -CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceee------
Q 044557 153 -DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLV------ 223 (362)
Q Consensus 153 -~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~------ 223 (362)
|+++||+||.|++|+|||+++..++..+. .|..++.+++|+|++. +++++.||+|++||+.++.......
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~ 232 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK 232 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred CCCCEEEEEECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence 88999999999999999998887766654 6788999999999873 8899999999999998764322110
Q ss_pred ---------------hhhhccccceeEEEEe-cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEE------
Q 044557 224 ---------------DVLERHNSGINALALS-CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC------ 281 (362)
Q Consensus 224 ---------------~~~~~h~~~v~~i~~s-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~------ 281 (362)
....+|...|.++.|+ ||++.|++++.|+++++||+...... ..+.+|...+..
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNLLPN 308 (393)
T ss_dssp CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCS
T ss_pred cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEEccc
Confidence 1124577889999987 79999999999999999998754321 122223222221
Q ss_pred ------------EEEeC---C-eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec
Q 044557 282 ------------MAVVS---D-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 282 ------------~~~~~---~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 345 (362)
..+.+ . ++++|+.|++|++|+... ..+...+.+|..+|.+++|+|++ ++||++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~--~~~~~~~~~~~~~V~svafspdG---------~~LA~a 377 (393)
T 4gq1_A 309 VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE--KDSNSIPIQLGMPIVDFCWHQDG---------SHLAIA 377 (393)
T ss_dssp EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC--TTCCEEEEECSSCEEEEEECTTS---------SEEEEE
T ss_pred cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC--CcEEEEecCCCCcEEEEEEcCCC---------CEEEEE
Confidence 12221 2 678899999999999643 34466677899999999998765 469999
Q ss_pred CCCCcEEEEecc
Q 044557 346 SLDCDIKVWQIS 357 (362)
Q Consensus 346 s~D~~i~~W~~~ 357 (362)
+.|| +.+|++.
T Consensus 378 s~~G-v~lvrL~ 388 (393)
T 4gq1_A 378 TEGS-VLLTRLM 388 (393)
T ss_dssp ESSE-EEEEEEG
T ss_pred eCCC-eEEEEEe
Confidence 8766 5566653
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.9e-31 Score=236.88 Aligned_cols=250 Identities=13% Similarity=0.133 Sum_probs=199.3
Q ss_pred EeecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec
Q 044557 65 AVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV 142 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 142 (362)
..+...+.++.+.++ .+++++.|+.|++|++..... .....+..|.
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~--------------------------------~~~~~~~~h~ 52 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW--------------------------------VQVHELKEHN 52 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE--------------------------------EEEEEEECCS
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE--------------------------------EeeeeecCCC
Confidence 345678888888765 588999999999999864320 0112234688
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeee-ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~ 220 (362)
..|.+++|+|++++|++++.|+.|++||+++++...... ..|...|.+++|+|++. +++++.||.|++||+.......
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 899999999999999999999999999998887544432 46888999999999987 8899999999999998765322
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC--------------CcEEEEEeecCccceeEEEEEeC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD--------------GNILVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~h~~~v~~~~~~~ 286 (362)
........|...|.+++|+|++.+|++++.|+.|++||+.... .....+..+.+|...|.++++++
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence 2223335688999999999999999999999999999964210 01124556778999999999976
Q ss_pred C--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 287 D--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 287 ~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+ ++++++.|+.|++|+.. ...++..+.+|...|.+++|+|++ .+|++| .|+.|++|++..
T Consensus 213 ~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 213 NGSRVAWVSHDSTVCLADAD--KKMAVATLASETLPLLAVTFITES---------SLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SSSEEEEEETTTEEEEEEGG--GTTEEEEEECSSCCEEEEEEEETT---------EEEEEE-TTSSCEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEECC--CCceeEEEccCCCCeEEEEEecCC---------CEEEEE-eCCeEEEEEccC
Confidence 4 89999999999999964 345688899999999999998764 467777 899999999965
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-30 Score=239.02 Aligned_cols=247 Identities=22% Similarity=0.316 Sum_probs=197.8
Q ss_pred cceeeeccc-CccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 9 HHCLTTLKG-HNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 9 ~~~~~tl~g-H~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
.++...+.. |...|.+++|+ +++|++|+.||.|++||+.+... .. .+..+...+.++.+.++.+++++
T Consensus 123 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~-------~~~~~~~~v~~~~~~~~~l~~~~ 193 (401)
T 4aez_A 123 GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK--LR-------TMAGHQARVGCLSWNRHVLSSGS 193 (401)
T ss_dssp CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EE-------EECCCSSCEEEEEEETTEEEEEE
T ss_pred CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE--EE-------EecCCCCceEEEEECCCEEEEEc
Confidence 344455554 89999999994 78999999999999999875421 11 12235678888988888999999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT 165 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 165 (362)
.||.|++||+..... ....+..|...|.+++|+|++++|++|+.|+.
T Consensus 194 ~dg~i~i~d~~~~~~---------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 194 RSGAIHHHDVRIANH---------------------------------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp TTSEEEEEETTSSSC---------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCEEEEecccCcc---------------------------------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 999999999864221 01223468899999999999999999999999
Q ss_pred EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEe--CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecC
Q 044557 166 IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGS--ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCD 241 (362)
Q Consensus 166 i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 241 (362)
|++||+++++.+..+. .|...|.+++|+|++. + ++++ .|+.|++||+.++.....+ .+...|.+++|+|+
T Consensus 241 v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-----~~~~~v~~~~~s~~ 314 (401)
T 4aez_A 241 VQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-----DAGSQVTSLIWSPH 314 (401)
T ss_dssp EEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-----ECSSCEEEEEECSS
T ss_pred EEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-----eCCCcEEEEEECCC
Confidence 9999999988877664 6889999999999774 4 4544 7999999999877543322 36678999999999
Q ss_pred CCEEEE--EcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC
Q 044557 242 GSVLYS--GACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 242 ~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~ 305 (362)
+.+|++ |+.||.|++|++.+.. ......+.+|...|.+++|+++ ++++++.|+.|++|+...
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSSSG--LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEETTE--EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred CCeEEEEeecCCCcEEEEecCCcc--ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 999999 5589999999997632 3344557789999999999865 899999999999999643
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-30 Score=240.18 Aligned_cols=260 Identities=24% Similarity=0.370 Sum_probs=193.9
Q ss_pred cceeee--cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEE
Q 044557 9 HHCLTT--LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSA 84 (362)
Q Consensus 9 ~~~~~t--l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~ 84 (362)
.++++. +.+|...|++|+|+ |++||+|+.||+|++||+++... .. ....|...+.++...+..++++
T Consensus 135 g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~--~~-------~~~~h~~~v~~~s~~~~~l~sg 205 (420)
T 4gga_A 135 GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--LR-------NMTSHSARVGSLSWNSYILSSG 205 (420)
T ss_dssp CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EE-------EECCCSSCEEEEEEETTEEEEE
T ss_pred CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--EE-------EEeCCCCceEEEeeCCCEEEEE
Confidence 344554 45788999999995 78999999999999999876431 11 1223566778888888889999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
+.|+.+++|+...... ....+.+|...+..+.++|+++++++++.|+
T Consensus 206 s~d~~i~~~d~~~~~~---------------------------------~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 206 SRSGHIHHHDVRVAEH---------------------------------HVATLSGHSQEVCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp ETTSEEEEEETTSSSC---------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eCCCceeEeeecccce---------------------------------eeEEecccccceeeeeecCCCCeeeeeeccc
Confidence 9999999999764321 1123346888999999999999999999999
Q ss_pred cEEEEECCCceE----EEeeeccCcccEEEEEEcCCCc--EEE--EeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 165 TIKIWRTSDFKC----LESITNAHDDAINAVALSDDGD--VYT--GSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 165 ~i~iwd~~~~~~----~~~~~~~h~~~v~~v~~~~~~~--~~s--~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
.+++|+...++. +... ..|...|.+++|+|.+. +++ |+.|++|++||+.++..... + .+...+.++
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~----~-~~~~~v~~~ 326 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA----V-DAHSQVCSI 326 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE----E-ECSSCEEEE
T ss_pred cceEEeeccccccceeeeee-cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee----e-ccccceeee
Confidence 999999987642 2223 46888999999999764 443 45899999999988753322 2 245678999
Q ss_pred EEecCCCEEEEEc--CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 237 ALSCDGSVLYSGA--CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 237 ~~s~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
.|+|++..+++++ .|+.|++||..+.+ .+..+.+|...|++++|+++ +|+|||.|++||+|++.+. .+..
T Consensus 327 ~~~~~~~~lv~~sg~~d~~I~iwd~~~~~----~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~--~~~~ 400 (420)
T 4gga_A 327 LWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL--DPAR 400 (420)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS--SCC-
T ss_pred eecCCCCeEEEEEecCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC--Cccc
Confidence 9999999988765 79999999997643 45678999999999999865 8999999999999997542 2233
Q ss_pred EecCCCCcEE
Q 044557 313 VLEGHRGPVK 322 (362)
Q Consensus 313 ~l~~h~~~v~ 322 (362)
..+.|...+.
T Consensus 401 ~~~~~~~~~~ 410 (420)
T 4gga_A 401 RREREKASAA 410 (420)
T ss_dssp ----------
T ss_pred hhhhccCCcc
Confidence 4444544443
No 91
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-31 Score=238.93 Aligned_cols=273 Identities=11% Similarity=0.031 Sum_probs=184.7
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCccccee
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 107 (362)
++++|+||+.||+|++||+++.... ..+ ....+.++.+.++ +++++.|++|++|+......
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~--~~~---------~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~------- 107 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTI--TTI---------TTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQIT------- 107 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCE--EEE---------EEECCCTTCCCCS-EEEECSTTEEEEEETTTEEE-------
T ss_pred CCCEEEEECCCCcEEEEECCCCcEE--EEE---------ecCCceeeeeCCc-eEEecCCCeEEEEEccCceE-------
Confidence 5789999999999999998764311 111 1234445555555 89999999999998753110
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec--CCCEEEEEECCCcEEEEECCCceEEEeeeccCc
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK--DETLLYSVSWDRTIKIWRTSDFKCLESITNAHD 185 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~ 185 (362)
+..... ...+. .....|.+.|.+++|+| ++++|++++.|++|++||+++++++......|.
T Consensus 108 ~~~~~~-------------~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 170 (343)
T 3lrv_A 108 ILDSKT-------------NKVLR----EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD 170 (343)
T ss_dssp EEETTT-------------CCEEE----EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred EeecCC-------------cceeE----EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence 000000 00000 01124668899999999 999999999999999999999988766555566
Q ss_pred ccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc-cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 186 DAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER-HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 186 ~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
..+.+++|+|++. +++|+.||.|++||+.++.... ..+.. |..+|++++|+|+|.+|++++ |+.|++||++...
T Consensus 171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~---~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS---SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV 246 (343)
T ss_dssp CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC---EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc---cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence 6899999999997 6788999999999998875431 22344 899999999999999999999 5599999998754
Q ss_pred CcEEEEEeecCcccee--EEEEEeCC--eEEEeeC-CCcEEEeeCCCCc--eeeeeEecCCCCcEEEEEeeecCCccCCC
Q 044557 264 GNILVVGALRGHTKSI--LCMAVVSD--LVCSGSA-DKTIRIWRGIDRN--YTCLAVLEGHRGPVKCLAAAIDNDRCDSS 336 (362)
Q Consensus 264 ~~~~~~~~~~~h~~~v--~~~~~~~~--~~~s~s~-D~~i~~W~~~~~~--~~~~~~l~~h~~~v~~~~~~~~~~~~~~~ 336 (362)
... .+..+..|...+ .+++|+++ ++++++. |+.|++|+..... +.. .++..++|.+..
T Consensus 247 ~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~------ 311 (343)
T 3lrv_A 247 GTL-AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDT------ 311 (343)
T ss_dssp TCB-SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC----------
T ss_pred cce-eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCccc------
Confidence 321 111222233333 35888754 8999888 9999999863321 211 345555554411
Q ss_pred CCceEEEecCCCCcEEEEe
Q 044557 337 DTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 337 ~~~~~l~s~s~D~~i~~W~ 355 (362)
.....|++++.|+.++++-
T Consensus 312 ~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 312 ADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp CCCCEEEEEEETTEEEEEE
T ss_pred cccceeEEEecCCceEEEE
Confidence 1223466777777777763
No 92
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-31 Score=240.88 Aligned_cols=255 Identities=16% Similarity=0.226 Sum_probs=199.2
Q ss_pred eecceeEEEEEcC------ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEe
Q 044557 66 VGKGAVKSLVVLA------DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWV 139 (362)
Q Consensus 66 ~~~~~v~~i~~~~------~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (362)
.|...|.++.+.+ ..+++++.++.|++|++...... ..+. .....
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~----~~~~-------------------------~~~~~ 66 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI----RLLQ-------------------------SYVDA 66 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE----EEEE-------------------------EEECS
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE----Eeee-------------------------ecccc
Confidence 4577899999984 23778888889999998643211 0000 00011
Q ss_pred eecCceeEEEEecC----CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeC
Q 044557 140 HHVDAVSALALTKD----ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRR 213 (362)
Q Consensus 140 ~h~~~v~~~~~~~~----~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~ 213 (362)
.|...|.+++|+|+ +++|++|+.|+.|++||+.+++.+..+. .|...|.+++|+| ++. +++++.||.|++||+
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 25678999999999 6799999999999999999998888775 7999999999999 776 889999999999999
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcE------------------------EEE
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI------------------------LVV 269 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~------------------------~~~ 269 (362)
.++.... ....+..|...|.+++|+|++.+|++++.|+.|++||+....... ...
T Consensus 146 ~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 146 QTDTLVA-IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp TTTEEEE-EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred ecCeEEE-EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 8764322 222235799999999999999999999999999999986422100 011
Q ss_pred EeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCc------------eeeeeEecCCCCcEEEEEeeecCCccCCCC
Q 044557 270 GALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRN------------YTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337 (362)
Q Consensus 270 ~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~------------~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~ 337 (362)
....+|...|.+++|+++++++++.|+.|++|+..... ...+..+.+|...|.+++|+|+.
T Consensus 225 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------- 297 (366)
T 3k26_A 225 STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF------- 297 (366)
T ss_dssp EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT-------
T ss_pred ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC-------
Confidence 23345899999999998999999999999999964322 25577889999999999998862
Q ss_pred CceEEEecCCCCcEEEEeccc
Q 044557 338 TSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 338 ~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+.+|++|+.||.|++||+..
T Consensus 298 ~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 298 WQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp TSSEEEEECTTSCEEEEECCS
T ss_pred CCcEEEEEecCCcEEEEECCC
Confidence 135799999999999999964
No 93
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.8e-30 Score=238.16 Aligned_cols=232 Identities=31% Similarity=0.533 Sum_probs=195.5
Q ss_pred cceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeE
Q 044557 68 KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSA 147 (362)
Q Consensus 68 ~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 147 (362)
...+.++.+.++.+++++.||+|++||+.+.+. ...+.+|.+.|.+
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~----------------------------------~~~~~~h~~~v~~ 178 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC----------------------------------KRILTGHTGSVLC 178 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSCCE----------------------------------EEEECCCSSCEEE
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE----------------------------------EEEEcCCCCcEEE
Confidence 346888888888899999999999999865431 1122368889999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhh
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLE 227 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 227 (362)
+++ ++++|++|+.||.|++||+++++++..+. .|...|.+++|++ +.+++++.||.|++||+.++... .....+.
T Consensus 179 l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~ 253 (435)
T 1p22_A 179 LQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI-HHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDI-TLRRVLV 253 (435)
T ss_dssp EEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC-CCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCC-EEEEEEC
T ss_pred EEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc-CCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCc-eeeeEec
Confidence 988 78899999999999999999999888775 7999999999974 47999999999999999876533 2224556
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCc
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~ 307 (362)
+|..+|.+++| ++.+|++|+.|+.|++||+.+.. .+..+.+|...|.++.+.++++++|+.|+.|++||.. .
T Consensus 254 ~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~--~ 325 (435)
T 1p22_A 254 GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE----FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE--C 325 (435)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT--T
T ss_pred CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc----EEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC--C
Confidence 79999999998 78999999999999999998643 3456778999999999999999999999999999964 3
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..++..+.+|...|.++++. +.+|++|+.||.|++||+.
T Consensus 326 ~~~~~~~~~h~~~v~~~~~~-----------~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 326 GACLRVLEGHEELVRCIRFD-----------NKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp CCEEEEECCCSSCEEEEECC-----------SSEEEEEETTSCEEEEEHH
T ss_pred CCEEEEEeCCcCcEEEEEec-----------CCEEEEEeCCCcEEEEECC
Confidence 56788999999999999882 2469999999999999984
No 94
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-29 Score=223.86 Aligned_cols=245 Identities=23% Similarity=0.323 Sum_probs=197.8
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH 85 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~ 85 (362)
..++...+.+|.+.|.++.|+ +++|++|+.||.|++|++........ ...+..+...+.++.+.++.+++++
T Consensus 48 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~l~~~~ 121 (313)
T 3odt_A 48 DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDP------LYTLIGHQGNVCSLSFQDGVVISGS 121 (313)
T ss_dssp SSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-------CEECCCSSCEEEEEEETTEEEEEE
T ss_pred CCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCc------ccchhhcccCEEEEEecCCEEEEEe
Confidence 455677888999999999995 78999999999999999865321111 1112335678888888888899999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEECCC
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDR 164 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~ 164 (362)
.|+.|++||.. . ....+..|...+.++.+.| ++++|++++.|+
T Consensus 122 ~d~~i~~~d~~--~----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 165 (313)
T 3odt_A 122 WDKTAKVWKEG--S----------------------------------LVYNLQAHNASVWDAKVVSFSENKFLTASADK 165 (313)
T ss_dssp TTSEEEEEETT--E----------------------------------EEEEEECCSSCEEEEEEEETTTTEEEEEETTS
T ss_pred CCCCEEEEcCC--c----------------------------------EEEecccCCCceeEEEEccCCCCEEEEEECCC
Confidence 99999999821 1 0112235778899999988 899999999999
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCE
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 244 (362)
.|++|| ..+....+...|...+.+++|+|++.+++++.||.|++||+.++.. ...+..|..+|++++|+|++ .
T Consensus 166 ~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~-~ 238 (313)
T 3odt_A 166 TIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV----LRTYEGHESFVYCIKLLPNG-D 238 (313)
T ss_dssp CEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTS-C
T ss_pred CEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh----hhhhhcCCceEEEEEEecCC-C
Confidence 999999 4455566655589999999999999999999999999999987653 33456789999999999999 6
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCC
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~ 305 (362)
|++++.|+.|++||+.+.+ ....+..|...|.+++++++ .+++++.|+.|++|+...
T Consensus 239 l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGS----LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEEETTSEEEEECTTTCC----EEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred EEEEecCCEEEEEECCCCc----eeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 9999999999999998654 34456788889999999865 578899999999999643
No 95
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=1.9e-29 Score=224.92 Aligned_cols=245 Identities=22% Similarity=0.355 Sum_probs=195.5
Q ss_pred EEeecceeEEEEEcCc---eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 64 VAVGKGAVKSLVVLAD---KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~~---~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
+..|.+.|.++.+.++ .|+||+.|++|++||+...+.... .....+.+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~-----------------------------~~~~~l~~ 84 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG-----------------------------IPQRALRG 84 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE-----------------------------EEEEEECC
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc-----------------------------eeeEEEeC
Confidence 4457889999999753 589999999999999875432110 01123356
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCc
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
|...|.+++|+|++++|++++.|+.|++|+........... .+...+..+.+++++. +++++.|+.+++||.....
T Consensus 85 h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-- 161 (340)
T 4aow_A 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-- 161 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--
T ss_pred CCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec-CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc--
Confidence 89999999999999999999999999999999887766554 5677888888998876 8999999999999986542
Q ss_pred ceeehhhhccccceeEEEEecCC--CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCC
Q 044557 220 HSLVDVLERHNSGINALALSCDG--SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSAD 295 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D 295 (362)
........|...+..++|++++ .++++++.|+.|++||+.+.. ....+.+|...|.+++|+++ ++++|+.|
T Consensus 162 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D 236 (340)
T 4aow_A 162 -KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHIGHTGYLNTVTVSPDGSLCASGGKD 236 (340)
T ss_dssp -EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc----eeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 2233456788999999998865 578899999999999997643 34567899999999999865 89999999
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+.|++|+.. ...++..+.+| ..|.+++|+|++ .+++++.|+.|++||+..
T Consensus 237 g~i~iwd~~--~~~~~~~~~~~-~~v~~~~~~~~~----------~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 237 GQAMLWDLN--EGKHLYTLDGG-DIINALCFSPNR----------YWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp CEEEEEETT--TTEEEEEEECS-SCEEEEEECSSS----------SEEEEEETTEEEEEETTT
T ss_pred CeEEEEEec--cCceeeeecCC-ceEEeeecCCCC----------ceeeccCCCEEEEEECCC
Confidence 999999964 34567777654 579999997653 256777899999999864
No 96
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=3.7e-30 Score=231.91 Aligned_cols=282 Identities=12% Similarity=0.140 Sum_probs=186.1
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE--cCcee-E
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV--LADKL-F 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~l-~ 82 (362)
..+.+.++++|.+.|++++|+ |++|++|+.|+ +++||+++..... ......+..+.+ ..+.+ +
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 75 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-----------SQEMRHLSKVRMLHRTNYVAF 75 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-----------EEECSCCCEEEECTTSSEEEE
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-----------eeecCCeEEEEEcCCCCEEEE
Confidence 355677889999999999995 78999888765 7899976432111 011112333333 34444 5
Q ss_pred EEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC
Q 044557 83 SAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 83 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+++.|++|++||+..+... .. ..|...|.+++++++. ++++ .
T Consensus 76 ~~~~d~~v~iWd~~~~~~~----------------------------------~~-~~~~~~v~~v~~~~~~--~~~~-~ 117 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQDV----------------------------------SR-IKVDAPVKDLFLSREF--IVVS-Y 117 (355)
T ss_dssp ECSSTTEEEEEETTTTEEE----------------------------------EE-EECSSCEEEEEECSSE--EEEE-E
T ss_pred EECCccEEEEEECCCCcEE----------------------------------EE-EECCCceEEEEEcCCE--EEEE-E
Confidence 6788899999998654310 01 1355688999998764 4444 3
Q ss_pred CCcEEEEECCCc-eEEEeeeccCcccEEEEEEcCCCcEEE--EeCCCeEEEEeCCCCCCc----c--------eeehhhh
Q 044557 163 DRTIKIWRTSDF-KCLESITNAHDDAINAVALSDDGDVYT--GSADKKIKVWRRSPGNKK----H--------SLVDVLE 227 (362)
Q Consensus 163 d~~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~s--~~~dg~i~iw~~~~~~~~----~--------~~~~~~~ 227 (362)
|+.|++||+.+. +.+..+.. +...+++++ ..++. |+.||.|++||+.++... . .....+.
T Consensus 118 ~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~ 192 (355)
T 3vu4_A 118 GDVISVFKFGNPWKRITDDIR----FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192 (355)
T ss_dssp TTEEEEEESSTTCCBSSCCEE----EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEEC
T ss_pred cCEEEEEECCCCceeeEEecc----CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE
Confidence 889999999987 66555432 444566777 44444 689999999999865310 0 0134567
Q ss_pred ccccceeEEEEecCCCEEEEEcCCCc-EEEEeccCCCCcEEEEEeec-C-ccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 228 RHNSGINALALSCDGSVLYSGACDRS-IIVWEKEEDDGNILVVGALR-G-HTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 228 ~h~~~v~~i~~s~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
+|..+|++++|+|+|++|++|+.|++ |++||+.+++ .+..+. + |...|.+++|+++ ++++++.|++|++|+
T Consensus 193 ~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~----~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV----LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC----EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc----EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 89999999999999999999999999 9999998654 234555 5 9999999999865 899999999999999
Q ss_pred CCCCceeeeeEecC---------------------CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GIDRNYTCLAVLEG---------------------HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~~~~~~~~~l~~---------------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
...........+.+ +......++|++ ++.+|++++.||.+++|++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---------d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 269 IFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS---------ESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp SSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS---------SSEEEEEETTTTEEEEEEEE
T ss_pred ccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC---------CCCEEEEEeCCCeEEEEEEE
Confidence 75432211122211 111223455543 44678899999999999974
No 97
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.98 E-value=1.3e-29 Score=252.15 Aligned_cols=246 Identities=20% Similarity=0.273 Sum_probs=197.4
Q ss_pred ccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFS 83 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s 83 (362)
+.+++.++.+|.+.|.++.|+ +++|++|+.||+|++||+.+... .. .+..|...+.++.+.++ .+++
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--~~-------~~~~~~~~v~~~~~s~~~~~l~~ 114 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--VV-------DFEAHPDYIRSIAVHPTKPYVLS 114 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--EE-------EEECCSSCEEEEEECSSSSEEEE
T ss_pred CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EE-------EEecCCCCEEEEEEeCCCCEEEE
Confidence 456788899999999999994 78999999999999999875431 11 12335678889988765 5999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEEC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSW 162 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~ 162 (362)
++.||+|++|+++.... ....+..|...|.+++|+| +++.|++++.
T Consensus 115 ~~~dg~i~vw~~~~~~~---------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 115 GSDDLTVKLWNWENNWA---------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp EETTSEEEEEEGGGTSE---------------------------------EEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred EcCCCEEEEEECCCCce---------------------------------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999864310 0112345788999999999 8899999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcC--CCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSD--DGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~--~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
|+.|++||+.+++....+...+...+.+++|+| ++. +++++.||.|++||..++. ....+..|..+|.+++|+
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFH 237 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE----EEEEEECCSSCEEEEEEC
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEc
Confidence 999999999888776666656668899999998 775 8899999999999997754 334456788999999999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRG 303 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~ 303 (362)
|++.+|++++.||.|++||..+.. ....+..|...+.+++++++ .+++++.|+.+.+|+.
T Consensus 238 ~~~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 238 PTLPIIISGSEDGTLKIWNSSTYK----VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp SSSSEEEEEETTSCEEEEETTTCS----EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCc----EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 999999999999999999997643 34566778889999999865 2455555677888874
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-30 Score=238.39 Aligned_cols=251 Identities=14% Similarity=0.183 Sum_probs=181.7
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCC-Ccccceeeecc-ceeEEe----ecceeEEEEEc----CceeEEE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTF-SSELDQEFLSN-NNIVAV----GKGAVKSLVVL----ADKLFSA 84 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~-~~~~~~~~~~~-~~~~~~----~~~~v~~i~~~----~~~l~s~ 84 (362)
+|.+.|.+++|. +++|++|+.||+|++||++.. ........... ...+.. +...+.++... +..++++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 599999999994 689999999999999998521 11111111100 001111 12334454432 4469999
Q ss_pred ecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee--ecCceeEEEEecCCCEEEEEEC
Q 044557 85 HQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH--HVDAVSALALTKDETLLYSVSW 162 (362)
Q Consensus 85 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~ 162 (362)
+.|+.|++||++..... ..+.. |.+.|.+++|+|++++|++|+.
T Consensus 189 ~~d~~i~iwd~~~~~~~----------------------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 234 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERL----------------------------------QIIENSPRHGAVSSICIDEECCVLILGTT 234 (437)
T ss_dssp ETTSEEEEEETTTCCEE----------------------------------EEEECCGGGCCEEEEEECTTSCEEEEEET
T ss_pred eCCCeEEEEeCCCCeee----------------------------------EEEccCCCCCceEEEEECCCCCEEEEEcC
Confidence 99999999998754310 11122 7789999999999999999999
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcC----CCc-EEEEeCCCeEEEEeCCCCCCcceeeh-------------
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSD----DGD-VYTGSADKKIKVWRRSPGNKKHSLVD------------- 224 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~----~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~------------- 224 (362)
|+.|++||+++++++..+...|...|.+++++| ++. +++++.||.|++||+.++.....+..
T Consensus 235 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 235 RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence 999999999999998887657888999997664 564 88999999999999987653222210
Q ss_pred -------hhhc--cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEE-------------------------
Q 044557 225 -------VLER--HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVG------------------------- 270 (362)
Q Consensus 225 -------~~~~--h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------------------------- 270 (362)
.+.+ |...|++++|+ ++.+|++|+.|+.|++||+.+++....+..
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMK 393 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC
T ss_pred ccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecc
Confidence 0122 77889999999 789999999999999999876443221111
Q ss_pred --------eecCccceeEEEEEeCC----eEEEeeCCCcEEEee
Q 044557 271 --------ALRGHTKSILCMAVVSD----LVCSGSADKTIRIWR 302 (362)
Q Consensus 271 --------~~~~h~~~v~~~~~~~~----~~~s~s~D~~i~~W~ 302 (362)
....|...|.++++.++ +++||+.||.|++|+
T Consensus 394 ~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 394 RTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 12238899999998654 899999999999995
No 99
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=4.1e-30 Score=234.45 Aligned_cols=249 Identities=13% Similarity=0.166 Sum_probs=196.3
Q ss_pred EeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 65 AVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
..|.+.|.++.+.++.|++++.||+|++|++........ . .....+..|...
T Consensus 13 ~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-~---------------------------~~~~~~~~h~~~ 64 (397)
T 1sq9_A 13 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP-K---------------------------DKSYSHFVHKSG 64 (397)
T ss_dssp SCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG-G---------------------------GGEEEEECCTTC
T ss_pred hhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccC-C---------------------------CcceEEecCCCc
Confidence 346788999999998899999999999999976542110 0 011233468899
Q ss_pred eeEEEEecC----C---CEEEEEECCCcEEEEECCCceE-----EEeeeccC-----cccEEEEEEc----CCCc--EEE
Q 044557 145 VSALALTKD----E---TLLYSVSWDRTIKIWRTSDFKC-----LESITNAH-----DDAINAVALS----DDGD--VYT 201 (362)
Q Consensus 145 v~~~~~~~~----~---~~l~s~s~d~~i~iwd~~~~~~-----~~~~~~~h-----~~~v~~v~~~----~~~~--~~s 201 (362)
|.+++|+|+ + ++|++++.|+.|++||+.+++. +..+. .| ...|.+++|+ |++. +++
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 143 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVA 143 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCCCceEEEE
Confidence 999999999 9 9999999999999999987765 55554 56 5899999999 8885 678
Q ss_pred EeCCCeEEEEeCCC------CCCcc-eeehhh-------hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEE
Q 044557 202 GSADKKIKVWRRSP------GNKKH-SLVDVL-------ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNIL 267 (362)
Q Consensus 202 ~~~dg~i~iw~~~~------~~~~~-~~~~~~-------~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 267 (362)
++.||.|++||+.+ +.... .....+ ..|...|.+++|+|++ +|++++.|+.|++||+++..
T Consensus 144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~---- 218 (397)
T 1sq9_A 144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR---- 218 (397)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE----
T ss_pred EeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc----
Confidence 99999999999987 44332 000022 3478899999999999 99999999999999997632
Q ss_pred EEEeecC---c---cceeEEEEEeC--CeEEEeeCC---CcEEEeeCCCCceeeeeEecC-------------CCCcEEE
Q 044557 268 VVGALRG---H---TKSILCMAVVS--DLVCSGSAD---KTIRIWRGIDRNYTCLAVLEG-------------HRGPVKC 323 (362)
Q Consensus 268 ~~~~~~~---h---~~~v~~~~~~~--~~~~s~s~D---~~i~~W~~~~~~~~~~~~l~~-------------h~~~v~~ 323 (362)
.+..+.+ | ...|.+++|++ .++++++.| +.|++|+.. ..+++..+.+ |...|.+
T Consensus 219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 296 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE--FGERIGSLSVPTHSSQASLGEFAHSSWVMS 296 (397)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT--TCCEEEEECBC--------CCBSBSSCEEE
T ss_pred eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC--CCcccceeccCcccccccccccccCCcEEE
Confidence 3445666 8 89999999975 489999999 999999964 3466788888 9999999
Q ss_pred EEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 324 LAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
++|+|++ .+|++|+.||.|++||+..
T Consensus 297 ~~~~~~~---------~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 297 LSFNDSG---------ETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EEECSSS---------SEEEEEETTSEEEEEETTT
T ss_pred EEECCCC---------CEEEEEeCCCeEEEEEcCC
Confidence 9998754 4699999999999999854
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=6e-29 Score=219.64 Aligned_cols=247 Identities=25% Similarity=0.361 Sum_probs=191.6
Q ss_pred ccceeeec--ccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEE
Q 044557 8 DHHCLTTL--KGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFS 83 (362)
Q Consensus 8 ~~~~~~tl--~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s 83 (362)
+.++++++ .+|...|++++|+ +++|+||+.||+|++||+++... .. ....|...+.++...+..+++
T Consensus 54 tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~--~~-------~~~~h~~~~~~~~~~~~~l~s 124 (318)
T 4ggc_A 54 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--LR-------NMTSHSARVGSLSWNSYILSS 124 (318)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EE-------EEECCSSCEEEEEEETTEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--EE-------EecCccceEEEeecCCCEEEE
Confidence 34566655 4788999999994 78999999999999999876431 11 122345566677777888999
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
++.++.+++|+...... ......+|...+.++.+++++++|++++.|
T Consensus 125 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 171 (318)
T 4ggc_A 125 GSRSGHIHHHDVRVAEH---------------------------------HVATLSGHSQEVCGLRWAPDGRHLASGGND 171 (318)
T ss_dssp EETTSEEEEEETTSSSC---------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EecCCceEeeecCCCce---------------------------------eEEEEcCccCceEEEEEcCCCCEEEEEecC
Confidence 99999999998754321 112234688899999999999999999999
Q ss_pred CcEEEEECCCceEE---EeeeccCcccEEEEEEcCCCc-E---EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 164 RTIKIWRTSDFKCL---ESITNAHDDAINAVALSDDGD-V---YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 164 ~~i~iwd~~~~~~~---~~~~~~h~~~v~~v~~~~~~~-~---~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
+.|++||+++++.. ......|...|.+++++|.+. + ++++.+++|++||........ ...+...+..+
T Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----~~~~~~~v~~~ 246 (318)
T 4ggc_A 172 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----AVDAHSQVCSI 246 (318)
T ss_dssp SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----EEECSSCEEEE
T ss_pred cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----cccceeeeeee
Confidence 99999999876532 112235778899999998764 3 366789999999987654321 23467789999
Q ss_pred EEecCCCEEEEEc--CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC
Q 044557 237 ALSCDGSVLYSGA--CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 237 ~~s~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~ 305 (362)
.|+|++..+++++ .|+.|++||+.+.+ .+..+.+|.+.|.+++|+++ +|+|||.|++||+||+.+
T Consensus 247 ~~~~~~~~~~~~sg~~d~~i~iwd~~~~~----~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 247 LWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eecccccceEEEEEcCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 9999999887654 79999999998643 45678999999999999865 899999999999999643
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.1e-29 Score=232.64 Aligned_cols=263 Identities=17% Similarity=0.229 Sum_probs=197.8
Q ss_pred ceeeecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc---eeEE
Q 044557 10 HCLTTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD---KLFS 83 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~l~s 83 (362)
+.+.++.+|.+.|.+++|+ +++|++|+.||+|++||+....... ........+..|...+.++.+.++ .|++
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 149 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL--PLREPVITLEGHTKRVGIVAWHPTAQNVLLS 149 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS--CBCSCSEEEECCSSCEEEEEECSSBTTEEEE
T ss_pred CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc--ccCCceEEecCCCCeEEEEEECcCCCCEEEE
Confidence 3566789999999999994 5799999999999999987643111 000112233456778999988764 5899
Q ss_pred EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEE--eeecCceeEEEEecCCCEEEEEE
Q 044557 84 AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTW--VHHVDAVSALALTKDETLLYSVS 161 (362)
Q Consensus 84 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s 161 (362)
++.|++|++||+..+.. . ..+ ..|.+.|.+++|+|++++|++++
T Consensus 150 ~~~dg~i~iwd~~~~~~-------~---------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 150 AGCDNVILVWDVGTGAA-------V---------------------------LTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp EETTSCEEEEETTTTEE-------E---------------------------EEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred EcCCCEEEEEECCCCCc-------c---------------------------EEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999875421 0 111 24778999999999999999999
Q ss_pred CCCcEEEEECCCceEEEeeeccCccc-EEEEEEcCCCc-EEEE---eCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDA-INAVALSDDGD-VYTG---SADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~-v~~v~~~~~~~-~~s~---~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
.|+.|++||+++++.+..+...|... +.+++|+|++. +++| +.|+.|++||+.+........ ...|...+.++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~ 273 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ--ELDTSSGVLLP 273 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE--ECCCCSSCEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE--eccCCCceeEE
Confidence 99999999999999888774567765 89999999998 4555 589999999998765322211 12467789999
Q ss_pred EEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeee
Q 044557 237 ALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCL 311 (362)
Q Consensus 237 ~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~ 311 (362)
+|+|++++|+ +|+.|+.|++||+.+++.....+..+. |...|.+++|+++....++.|+.+++|++.......+
T Consensus 274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~~~~i 348 (402)
T 2aq5_A 274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVNKCEIARFYKLHERKCEPI 348 (402)
T ss_dssp EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGGGTEEEEEEEEETTEEEEE
T ss_pred EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecccccceecceeEEEEEcCCCcEEEE
Confidence 9999999996 556799999999987654344444443 6688999999987433456788999999754433333
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.1e-29 Score=234.81 Aligned_cols=257 Identities=16% Similarity=0.297 Sum_probs=197.3
Q ss_pred EeecceeEEEEEcCc---eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 65 AVGKGAVKSLVVLAD---KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~---~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
..|.+.+.++.+.++ .+++++.||.|++|++........ +. . .......+.+|
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--------~~------------~----~~~~~~~~~~h 180 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--------PS------------G----ECQPDLRLRGH 180 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--------TT------------C----CCCCSEEEECC
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--------cc------------c----cCCCcEEecCC
Confidence 446678889988764 488999999999999864321100 00 0 00112234578
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCceE-------EEeeeccCcccEEEEEEcCC-Cc-EEEEeCCCeEEEE
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKC-------LESITNAHDDAINAVALSDD-GD-VYTGSADKKIKVW 211 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~-------~~~~~~~h~~~v~~v~~~~~-~~-~~s~~~dg~i~iw 211 (362)
...+.+++|+|++. +|++|+.||.|++|++..... ...+ ..|...|.+++|+|+ +. +++++.||.|++|
T Consensus 181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 89999999999998 999999999999999987321 2223 378999999999994 44 7799999999999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--- 287 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--- 287 (362)
|+.+.... .....+..|..+|++++|+|++. .|++|+.||.|++||++..... +..+.+|...|.++.|+++
T Consensus 260 d~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 260 DTRNNNTS-KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp ETTCSCSS-SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEECCSSCEEEEEECSSCTT
T ss_pred ECCCCCCC-cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEeecCCCCEEEEEECCCCCC
Confidence 99876311 12233457899999999999987 6889999999999999864332 3446679999999999864
Q ss_pred eEEEeeCCCcEEEeeCCCCc------------eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 288 LVCSGSADKTIRIWRGIDRN------------YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~~------------~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
++++++.|+.|++|+..... ..++..+.+|...|.+++|+|++. ++|++++.||.|++|+
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--------~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP--------WIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST--------TEEEEEETTSEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC--------CEEEEEECCCCEEEeE
Confidence 69999999999999964311 245677889999999999987643 3799999999999999
Q ss_pred ccc
Q 044557 356 ISF 358 (362)
Q Consensus 356 ~~~ 358 (362)
+..
T Consensus 408 ~~~ 410 (430)
T 2xyi_A 408 MAE 410 (430)
T ss_dssp ECH
T ss_pred ccc
Confidence 864
No 103
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=7.5e-30 Score=229.01 Aligned_cols=246 Identities=12% Similarity=0.168 Sum_probs=186.5
Q ss_pred EeecceeEEEEEcCc--ee-EEEec---CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEE
Q 044557 65 AVGKGAVKSLVVLAD--KL-FSAHQ---DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTW 138 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~--~l-~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
..|...|.++.+.++ .+ ++++. |+.|++|++..+... ....
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~---------------------------------~~~~ 61 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK---------------------------------LLRE 61 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE---------------------------------EEEE
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc---------------------------------ceee
Confidence 446778999999874 34 45555 999999998754310 0111
Q ss_pred eeecCceeEEEEecC---CCEEEEEECCCcEEEEECCCce-EEEeeeccCcccEEEEEE------cCCCc-EEEEeCCCe
Q 044557 139 VHHVDAVSALALTKD---ETLLYSVSWDRTIKIWRTSDFK-CLESITNAHDDAINAVAL------SDDGD-VYTGSADKK 207 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~---~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~h~~~v~~v~~------~~~~~-~~s~~~dg~ 207 (362)
..|...|.+++|+|+ +++|++|+.|+.|++||+.+++ .+..+. .|...|.+++| +|++. +++++.||.
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 368889999999998 6999999999999999999887 666554 79999999955 57775 889999999
Q ss_pred EEEEeCCCCCCcceeehhhhc-cccceeEEE----EecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE
Q 044557 208 IKVWRRSPGNKKHSLVDVLER-HNSGINALA----LSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM 282 (362)
Q Consensus 208 i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~----~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~ 282 (362)
|++||+.++...........+ +...|.+++ |+|++.+|++++.|+.|++||++.... .....|...|.++
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~ 215 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSL 215 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEE
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCceEEE
Confidence 999999876522222222122 234788888 688999999999999999999986432 1235678899999
Q ss_pred EEeC-----CeEEEeeCCCcEEEeeCCCCceeeee-----EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 283 AVVS-----DLVCSGSADKTIRIWRGIDRNYTCLA-----VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 283 ~~~~-----~~~~s~s~D~~i~~W~~~~~~~~~~~-----~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
+|++ +++++++.|+.|++|+... ..++. .+.+|...|.+++|+|++. .+|++|+.||.|+
T Consensus 216 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~ 285 (357)
T 3i2n_A 216 EFDRKDISMNKLVATSLEGKFHVFDMRT--QHPTKGFASVSEKAHKSTVWQVRHLPQNR--------ELFLTAGGAGGLH 285 (357)
T ss_dssp EESCSSSSCCEEEEEESTTEEEEEEEEE--EETTTEEEEEEEECCSSCEEEEEEETTEE--------EEEEEEETTSEEE
T ss_pred EcCCCCCCCCEEEEECCCCeEEEEeCcC--CCcccceeeeccCCCcCCEEEEEECCCCC--------cEEEEEeCCCcEE
Confidence 9975 4899999999999999532 23333 3449999999999987532 3799999999999
Q ss_pred EEecccC
Q 044557 353 VWQISFP 359 (362)
Q Consensus 353 ~W~~~~~ 359 (362)
+||+..+
T Consensus 286 iwd~~~~ 292 (357)
T 3i2n_A 286 LWKYEYP 292 (357)
T ss_dssp EEEEECC
T ss_pred EeecCCC
Confidence 9999643
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=240.16 Aligned_cols=256 Identities=12% Similarity=0.169 Sum_probs=185.5
Q ss_pred cceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec---
Q 044557 68 KGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV--- 142 (362)
Q Consensus 68 ~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--- 142 (362)
.+.|.++.+.++ .|++++.||.|++|++.......... .. .. .....+.+|.
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~--------~~-----------~~----~~~~~~~~h~~~~ 84 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS--------RG-----------EY----NVYSTFQSHEPEF 84 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC--------CC-----------CE----EEEEEEECCCCEE
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc--------cc-----------ce----eEecccccccccc
Confidence 568889988764 59999999999999987644210000 00 00 0011233465
Q ss_pred ---------CceeEEEEecCC--CEEEEEECCCcEEEEECCCceEE----------------------------------
Q 044557 143 ---------DAVSALALTKDE--TLLYSVSWDRTIKIWRTSDFKCL---------------------------------- 177 (362)
Q Consensus 143 ---------~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~---------------------------------- 177 (362)
+.|.+++|+|++ ..|++++.|+.|++||+.+.+..
T Consensus 85 ~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 164 (447)
T 3dw8_B 85 DYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMV 164 (447)
T ss_dssp EGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEE
T ss_pred cccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheee
Confidence 789999999998 79999999999999998764431
Q ss_pred -----EeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee----hhhhccccceeEEEEecCC-CEEE
Q 044557 178 -----ESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV----DVLERHNSGINALALSCDG-SVLY 246 (362)
Q Consensus 178 -----~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~----~~~~~h~~~v~~i~~s~~~-~~l~ 246 (362)
..+..+|...|.+++|+|++. ++++ .||.|++||+.......... ..+..|...|.+++|+|++ .+|+
T Consensus 165 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 243 (447)
T 3dw8_B 165 EASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV 243 (447)
T ss_dssp EEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred eccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence 123457999999999999998 5666 89999999997432111111 1356799999999999998 9999
Q ss_pred EEcCCCcEEEEeccCCCCcEEEEEeecCccc------------eeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 247 SGACDRSIIVWEKEEDDGNILVVGALRGHTK------------SILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 247 s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~------------~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
+|+.|+.|++||++...........+.+|.. .|.+++|+++ ++++++. +.|++|+... ...++.
T Consensus 244 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~-~~~~~~ 321 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM-ENRPVE 321 (447)
T ss_dssp EEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC-CSSCSC
T ss_pred EEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC-Cccccc
Confidence 9999999999999875431101234556665 8999999865 8899988 9999999643 245677
Q ss_pred EecCCCCcE---------------EEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 313 VLEGHRGPV---------------KCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 313 ~l~~h~~~v---------------~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+.+|...+ ..++|+|++ .+|++|+.||.|++||+..
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~---------~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD---------SVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS---------SEEEEECSTTEEEEEETTT
T ss_pred eeeccccccccccccccccccccceEEEECCCC---------CEEEEeccCCEEEEEEcCC
Confidence 888886422 237776653 4689999999999999853
No 105
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=221.80 Aligned_cols=255 Identities=18% Similarity=0.258 Sum_probs=199.9
Q ss_pred eccceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 7 VDHHCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 7 ~~~~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
.+.+++.++.+|.+.|.++.|+ +++|++++.||+|++||+.+... ...+ .+...+.++.+.++ .++
T Consensus 62 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~--------~~~~~v~~~~~~~~~~~l~ 131 (369)
T 3zwl_B 62 LNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC--VATW--------KSPVPVKRVEFSPCGNYFL 131 (369)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--EEEE--------ECSSCEEEEEECTTSSEEE
T ss_pred CCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--EEEe--------ecCCCeEEEEEccCCCEEE
Confidence 3567888999999999999995 78999999999999999876431 1111 13556778887654 588
Q ss_pred EEecC-----CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC--ceeEEEEecCCC
Q 044557 83 SAHQD-----HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD--AVSALALTKDET 155 (362)
Q Consensus 83 s~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~ 155 (362)
+++.+ +.|++|++......... .... .........|.. .+.+++|+|+++
T Consensus 132 ~~~~~~~~~~g~i~~~d~~~~~~~~~~----~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 132 AILDNVMKNPGSINIYEIERDSATHEL----TKVS-------------------EEPIHKIITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp EEECCBTTBCCEEEEEEEEECTTTCCE----EEEC-------------------SSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred EecCCccCCCCEEEEEEecCCccceee----cccc-------------------cceeeeccCCcCccceeEEEEcCCCC
Confidence 88888 99999998754321110 0000 001112234555 899999999999
Q ss_pred EEEEEECCCcEEEEECCC-ceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccce
Q 044557 156 LLYSVSWDRTIKIWRTSD-FKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
+|++++.|+.|++||+++ .+.+..+. .|...|.+++|+|++. +++++.||.|++||+.++.....+ .+..++
T Consensus 189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~ 262 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY-----ETDCPL 262 (369)
T ss_dssp EEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSCE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee-----cCCCCc
Confidence 999999999999999998 66666664 6889999999999997 889999999999999876543322 267889
Q ss_pred eEEEEecCCCEEEEEcCCC--------------cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCc
Q 044557 234 NALALSCDGSVLYSGACDR--------------SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKT 297 (362)
Q Consensus 234 ~~i~~s~~~~~l~s~~~d~--------------~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~ 297 (362)
..++|+|++.++++++.++ .+++||..... .+..+.+|...|.+++|+++ ++++++.|+.
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE----EIGRVQGHFGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc----chhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence 9999999999999999998 89999987644 34567889999999999865 8999999999
Q ss_pred EEEeeCC
Q 044557 298 IRIWRGI 304 (362)
Q Consensus 298 i~~W~~~ 304 (362)
|++|+..
T Consensus 339 v~iw~~~ 345 (369)
T 3zwl_B 339 IRLHHFE 345 (369)
T ss_dssp EEEEEEC
T ss_pred EEEEECc
Confidence 9999964
No 106
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.8e-29 Score=229.54 Aligned_cols=250 Identities=12% Similarity=0.140 Sum_probs=183.7
Q ss_pred EeecceeEEEEEcCc---eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeee
Q 044557 65 AVGKGAVKSLVVLAD---KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHH 141 (362)
Q Consensus 65 ~~~~~~v~~i~~~~~---~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 141 (362)
..|...|.++.+.++ .|++++.|+.|++|++....... .....+|
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------------------------~~~~~~h 117 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS--------------------------------FIQGMGP 117 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE--------------------------------EECCCST
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce--------------------------------eeecCCc
Confidence 345678999998764 59999999999999987543110 0011247
Q ss_pred cCceeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEeee--ccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 142 VDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESIT--NAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 142 ~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
...|.+++|+| ++++|++++.|+.|++||+++. .+..+. ..|...|.+++|+|++. +++++.||.|++||+. +.
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~ 195 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH 195 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC
Confidence 88999999999 7799999999999999999864 344443 23457899999999987 8899999999999984 32
Q ss_pred CcceeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEee
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGS 293 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s 293 (362)
....+..|...|.+++|+|++. +|++++.|+.|++||+.........+..+ +|...|.+++|++ .++++++
T Consensus 196 ----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 196 ----EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp ----EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred ----EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence 3344567999999999999999 99999999999999998743222233333 6899999999987 4899999
Q ss_pred CCCcEEEeeCCCCceeeeeEecCC-------CCcEEEEEeeecCCcc--CCCCCceEEEecCCCCcEEEEeccc
Q 044557 294 ADKTIRIWRGIDRNYTCLAVLEGH-------RGPVKCLAAAIDNDRC--DSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 294 ~D~~i~~W~~~~~~~~~~~~l~~h-------~~~v~~~~~~~~~~~~--~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.|+.|++|+... ..+...+.+| ...+. +.|+|++... ...+++.+ +|+.|++|++||+..
T Consensus 271 ~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 271 QRNEIRVYSSYD--WSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS 339 (383)
T ss_dssp SSSEEEEEETTB--TTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT
T ss_pred CCCcEEEEECCC--CccccccccccccccccccceE-EeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC
Confidence 999999999643 2334444444 33333 2333332210 11122333 899999999999853
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=4.5e-29 Score=230.69 Aligned_cols=261 Identities=22% Similarity=0.316 Sum_probs=197.5
Q ss_pred eecccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccc-eeeeccceeEEeecceeEEEEEcCc---eeEEEe
Q 044557 13 TTLKGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELD-QEFLSNNNIVAVGKGAVKSLVVLAD---KLFSAH 85 (362)
Q Consensus 13 ~tl~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~---~l~s~~ 85 (362)
..+.+|.+.|+++++. +.+|++++.||.|++||+........ .........+..|...+.++.+.++ .|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 4567899999999995 45899999999999999865211100 0001112233456677888888754 699999
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec-CCCEEEEEECCC
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK-DETLLYSVSWDR 164 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~ 164 (362)
.||+|++|++.......... .....+..|...|.+++|+| ++.+|++++.|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~---------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg 254 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVI---------------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEE---------------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CCCeEEEEeCCCCCCCCcee---------------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence 99999999997532111000 00112346888999999999 678999999999
Q ss_pred cEEEEECCCc---eEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 165 TIKIWRTSDF---KCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 165 ~i~iwd~~~~---~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
.|++||+++. +.+..+. .|...|.+++|+|++. +++|+.||.|++||+..... ....+..|..+|.+++|+
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---~~~~~~~h~~~v~~i~~s 330 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWS 330 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEECCSSCEEEEEEC
T ss_pred eEEEEECCCCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---CeEEeecCCCCEEEEEEC
Confidence 9999999876 4455453 7899999999999885 77999999999999986432 233455789999999999
Q ss_pred cCCC-EEEEEcCCCcEEEEeccCCCCc----------EEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCC
Q 044557 240 CDGS-VLYSGACDRSIIVWEKEEDDGN----------ILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 240 ~~~~-~l~s~~~d~~i~~wd~~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~ 304 (362)
|++. +|++++.|+.|++||+...... ...+..+.+|...|.+++|+++ ++++++.|+.|++|+..
T Consensus 331 p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 9985 6999999999999999762210 1245567889999999999865 89999999999999853
No 108
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=4.6e-29 Score=217.54 Aligned_cols=190 Identities=15% Similarity=0.110 Sum_probs=139.7
Q ss_pred cCCCEEEEEE--CCCcEEEEEC-CCceEEEeeeccCcccEEEEEEcC---CCc-EEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 152 KDETLLYSVS--WDRTIKIWRT-SDFKCLESITNAHDDAINAVALSD---DGD-VYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 152 ~~~~~l~s~s--~d~~i~iwd~-~~~~~~~~~~~~h~~~v~~v~~~~---~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
++++++.+++ .|+.|++|++ .+++.+..+. .|...+..++|++ ++. +++++.|++|||||+.+++....+
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL-- 219 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKM-- 219 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEE--
Confidence 5666666543 5999999999 4477666554 6888888888887 445 889999999999999988644433
Q ss_pred hhhcc---ccceeEEEEecCCCEE------------EEEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCCe
Q 044557 225 VLERH---NSGINALALSCDGSVL------------YSGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSDL 288 (362)
Q Consensus 225 ~~~~h---~~~v~~i~~s~~~~~l------------~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~ 288 (362)
.+| ...+.+++|+|+|.++ ++|+.|++|++||..++......... ..+|...+.+..+++.+
T Consensus 220 --~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~ 297 (356)
T 2w18_A 220 --HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHC 297 (356)
T ss_dssp --ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTE
T ss_pred --cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCE
Confidence 333 3467788999999876 67889999999998754311111111 24777777777777779
Q ss_pred EEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEE-EEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 289 VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVK-CLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~-~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+++++.|++|||||.. .++++++|.+|...+. .++|+|++ .+|+|||.|++|||||+.
T Consensus 298 lASgS~DgTIkIWDl~--tGk~l~tL~gH~~~vvs~vafSPDG---------~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 298 AAAILTSGTIAIWDLL--LGQCTALLPPVSDQHWSFVKWSGTD---------SHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEEEETTSCEEEEETT--TCSEEEEECCC--CCCCEEEECSSS---------SEEEEECTTSCEEEEEEC
T ss_pred EEEEcCCCcEEEEECC--CCcEEEEecCCCCCeEEEEEECCCC---------CEEEEEECCCcEEEecCC
Confidence 9999999999999964 4678899999998766 58998764 479999999999999963
No 109
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=3e-30 Score=238.91 Aligned_cols=205 Identities=16% Similarity=0.168 Sum_probs=162.3
Q ss_pred EeeecCceeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEee-eccCcccEEEEEEcC-CCc-EEEEeCCCeEEEEeC
Q 044557 138 WVHHVDAVSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESI-TNAHDDAINAVALSD-DGD-VYTGSADKKIKVWRR 213 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~h~~~v~~v~~~~-~~~-~~s~~~dg~i~iw~~ 213 (362)
...|...|+|++|+| ++++||+|+.||.|+|||+.+++....+ ..+|.+.|.+++|+| ++. |++++.||+|++||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 346888999999999 5679999999999999999876533322 247999999999998 454 899999999999999
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEE
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVC 290 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~ 290 (362)
+.... ........+...+.+++|+|++.+|++|+.||.|++||+... .+..+.+|...|.+++|+++ +++
T Consensus 195 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-----~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 195 KGNIL--RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-----ELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp TSCEE--EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-----BCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred cCCce--eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-----eeEEEecccceEEeeeecCCCceEEE
Confidence 75421 122222334556889999999999999999999999998642 23467899999999999753 789
Q ss_pred EeeCCCcEEEeeCCCCce-eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 291 SGSADKTIRIWRGIDRNY-TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 291 s~s~D~~i~~W~~~~~~~-~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+++.|++|++||+..... ..+....+|...|.+++|+|++ .+|++|+.||+|+|||+..
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg---------~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG---------ARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS---------SEEEEEESSSCEEEEESSS
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCC---------CeeEEEcCCCEEEEEECCC
Confidence 999999999999643221 2233456899999999997654 4699999999999999853
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.6e-28 Score=219.21 Aligned_cols=241 Identities=13% Similarity=0.118 Sum_probs=189.5
Q ss_pred ecceeEEEEEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 67 GKGAVKSLVVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 67 ~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
|.+.|.++.+.++ .|++++.|+.|++|++....... .......|...
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~-------------------------------~~~~~~~~~~~ 58 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-------------------------------DLLQSLRYKHP 58 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-------------------------------EEEEEEECSSC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc-------------------------------cceeeeecCCc
Confidence 5677888888754 59999999999999986543100 01122368889
Q ss_pred eeEEEEecCCC-EEEEEECCCcEEEEEC-CCceEEEeeecc--CcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC-----
Q 044557 145 VSALALTKDET-LLYSVSWDRTIKIWRT-SDFKCLESITNA--HDDAINAVALSDDGDVYTGSADKKIKVWRRSP----- 215 (362)
Q Consensus 145 v~~~~~~~~~~-~l~s~s~d~~i~iwd~-~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~----- 215 (362)
|.+++|+|+++ +|++|+.|+.|++||+ .+++. ..+ .. |...|.+++|+|+..+++++.|+.|++||+.+
T Consensus 59 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~-~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QAL-TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp EEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EEC-BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC
T ss_pred eEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eec-cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccccc
Confidence 99999999999 9999999999999999 87765 333 36 99999999999933488999999999999875
Q ss_pred ----CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccC-CCCcEEEEEeecCccceeEEEEEeC---C
Q 044557 216 ----GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE-DDGNILVVGALRGHTKSILCMAVVS---D 287 (362)
Q Consensus 216 ----~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~h~~~v~~~~~~~---~ 287 (362)
+... ..+. |...|.+++|+|++ +++++.|+.|++||++. ...... .....|...+.++++++ .
T Consensus 137 ~~~~~~~~----~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~ 207 (342)
T 1yfq_A 137 IAVKNLNS----NNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGT--IEESGLKYQIRDVALLPKEQE 207 (342)
T ss_dssp EEEEESCS----SSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCE--EEECSCSSCEEEEEECSGGGC
T ss_pred ccccCCee----eEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccce--eeecCCCCceeEEEECCCCCC
Confidence 3322 2233 78899999999987 99999999999999986 433222 22346788899999986 4
Q ss_pred eEEEeeCCCcEEEeeCCCC--c--eeeeeEecCCCC---------cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEE
Q 044557 288 LVCSGSADKTIRIWRGIDR--N--YTCLAVLEGHRG---------PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVW 354 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~~~~--~--~~~~~~l~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W 354 (362)
++++++.|+.|++|+.... . ......+.+|.. .|.+++|+|++ .+|++|+.||.|++|
T Consensus 208 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH---------KFLYTAGSDGIISCW 278 (342)
T ss_dssp EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT---------CCEEEEETTSCEEEE
T ss_pred EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC---------CEEEEecCCceEEEE
Confidence 8999999999999996443 0 245667888866 99999998764 468999999999999
Q ss_pred eccc
Q 044557 355 QISF 358 (362)
Q Consensus 355 ~~~~ 358 (362)
|+..
T Consensus 279 d~~~ 282 (342)
T 1yfq_A 279 NLQT 282 (342)
T ss_dssp ETTT
T ss_pred cCcc
Confidence 9863
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-27 Score=222.89 Aligned_cols=238 Identities=15% Similarity=0.138 Sum_probs=180.3
Q ss_pred eeEEEEEcCc--ee-EEEecCCcEEEEecC--CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCc
Q 044557 70 AVKSLVVLAD--KL-FSAHQDHKIRVWKIN--NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDA 144 (362)
Q Consensus 70 ~v~~i~~~~~--~l-~s~~~dg~i~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 144 (362)
.|.++.+.++ .| ++++.|++|++|++. .+... . ......|...
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-------~-------------------------~~~~~~~~~~ 151 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-------K-------------------------LRKRFCFSKR 151 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE-------E-------------------------EEEEEECSSC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee-------e-------------------------eeecccCCCC
Confidence 5888888765 44 788899999999986 33210 0 0011245678
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEE----eeeccCcccEEEEEEcCC---Cc-EEEEeCCCeEEEEeCCCC
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLE----SITNAHDDAINAVALSDD---GD-VYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~~h~~~v~~v~~~~~---~~-~~s~~~dg~i~iw~~~~~ 216 (362)
|.+++|+|++++|++|+.|+.|++|++.+++... .+ .+|...|.+++|+|+ +. +++++.|+.|++||+.++
T Consensus 152 v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred ceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999999999999998776433 33 368899999999999 85 889999999999999876
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec-----------------------
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR----------------------- 273 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----------------------- 273 (362)
..... .+.+|..+|.+++|+ ++.+|++++.|++|++||+.+++. +..+.
T Consensus 231 ~~~~~---~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (450)
T 2vdu_B 231 FIVDK---WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN----LSTFDYNSLIKPYLNDQHLAPPRFQNEN 302 (450)
T ss_dssp TCEEE---ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE----EEEEECHHHHGGGCCTTSBC--------
T ss_pred ceeee---eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE----eeeecchhhhhhhhhhcccccccccccc
Confidence 53322 245799999999999 999999999999999999986542 12222
Q ss_pred --CccceeEEEEEeCC--eEEEee-CCCcEEEeeC--CC-CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec
Q 044557 274 --GHTKSILCMAVVSD--LVCSGS-ADKTIRIWRG--ID-RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 274 --~h~~~v~~~~~~~~--~~~s~s-~D~~i~~W~~--~~-~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 345 (362)
.....|.++.+.++ ++++++ .|+.|++|+. .. ....++..+.+| ..|.+++|+|+ +.+++.+
T Consensus 303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~---------~~~v~~~ 372 (450)
T 2vdu_B 303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND---------EFQVTLD 372 (450)
T ss_dssp --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT---------EEEEEEC
T ss_pred cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC---------cEEEEEe
Confidence 12345778888754 788888 8999999997 22 234677888888 88999999863 2344444
Q ss_pred CC------CCcEEEEeccc
Q 044557 346 SL------DCDIKVWQISF 358 (362)
Q Consensus 346 s~------D~~i~~W~~~~ 358 (362)
+. +..|++|.+..
T Consensus 373 ~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 373 NKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CTTCCSSCCCSEEEEEEET
T ss_pred cccCCCCCCcceEEEEEEc
Confidence 43 56689998754
No 112
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.6e-29 Score=223.48 Aligned_cols=210 Identities=22% Similarity=0.300 Sum_probs=173.8
Q ss_pred EeeecCceeEEEEecCCCEEEEEECCCcEEEEECC--CceEEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEe
Q 044557 138 WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS--DFKCLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWR 212 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~--~~~~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~ 212 (362)
+.+|.+.|.+++|+|++++|++|+.|+.|++||+. +.+.+..+. .|...|.+++|+++ +. +++++.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 45799999999999999999999999999999997 445555554 79999999999876 55 88999999999999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC----
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---- 286 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---- 286 (362)
+.++.. .....+..|..+|.+++|+|+ +.+|++++.|+.|++||+....... ...+.+|...|.+++|++
T Consensus 86 ~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 86 EENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC--EEEEECCTTCEEEEEECCCC--
T ss_pred cCCCce--eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee--eEEecCCCCceEEEEEcCcccc
Confidence 987531 233445668999999999999 9999999999999999998653322 224568999999999976
Q ss_pred -----------CeEEEeeCCCcEEEeeCCCC--ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 287 -----------DLVCSGSADKTIRIWRGIDR--NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 287 -----------~~~~s~s~D~~i~~W~~~~~--~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
.++++++.|+.|++|+.... ...+...+.+|...|.+++|+|++ ..+.+|++++.||.|++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~------~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV------LLRSYLASVSQDRTCII 235 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC------SSSEEEEEEETTSCEEE
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC------CCCCeEEEEeCCCEEEE
Confidence 48999999999999986432 245667899999999999998762 01367999999999999
Q ss_pred Eeccc
Q 044557 354 WQISF 358 (362)
Q Consensus 354 W~~~~ 358 (362)
||+..
T Consensus 236 wd~~~ 240 (379)
T 3jrp_A 236 WTQDN 240 (379)
T ss_dssp EEESS
T ss_pred EeCCC
Confidence 99865
No 113
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.2e-27 Score=218.38 Aligned_cols=281 Identities=18% Similarity=0.260 Sum_probs=177.6
Q ss_pred ccCccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC-----ceeEEEecC
Q 044557 16 KGHNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA-----DKLFSAHQD 87 (362)
Q Consensus 16 ~gH~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-----~~l~s~~~d 87 (362)
.+|...|.++.|. +.+|++++.||.|++||+.+.... ..+ .+...+.++.+.+ ..+++++.|
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA--DVF--------NFEETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE--EEE--------ECSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc--eec--------cCCCceeeeEeecCCCCCcEEEEEcCC
Confidence 4699999999994 468999999999999998753211 111 1234455555543 268999999
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEECCCcE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSWDRTI 166 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i 166 (362)
+.|++||+...... ..+..|...|.+++|+|+++ +|++|+.|+.|
T Consensus 166 ~~v~~~d~~~~~~~----------------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i 211 (408)
T 4a11_B 166 PKVQLCDLKSGSCS----------------------------------HILQGHRQEILAVSWSPRYDYILATASADSRV 211 (408)
T ss_dssp SSEEEEESSSSCCC----------------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred CeEEEEeCCCccee----------------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcE
Confidence 99999998754321 11235778999999999998 69999999999
Q ss_pred EEEECCCce-EEEee--------------eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhh-hcc
Q 044557 167 KIWRTSDFK-CLESI--------------TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVL-ERH 229 (362)
Q Consensus 167 ~iwd~~~~~-~~~~~--------------~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~h 229 (362)
++||++... ++..+ ...|...|.+++|+|++. +++++.||.|++||+.++.......... ...
T Consensus 212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 291 (408)
T 4a11_B 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS 291 (408)
T ss_dssp EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC
T ss_pred EEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc
Confidence 999998764 22222 136888999999999997 8899999999999998875432221111 111
Q ss_pred ccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCc
Q 044557 230 NSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRN 307 (362)
Q Consensus 230 ~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~ 307 (362)
...+........+..++.++.|+.|++||+.+.+ .+..+.+|...|.+++|+++ ++++++.||.|++|+...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-- 365 (408)
T 4a11_B 292 KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE----QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL-- 365 (408)
T ss_dssp SSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred cccceeEEecCCCceEEEEecCCEEEEEECcCCc----ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC--
Confidence 1222222223345677778889999999998644 35567899999999999865 899999999999999643
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+.+.....+... ..+.+ .....+.+.+.|+.+++|+..
T Consensus 366 ~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 366 YEPVPDDDETTTK---SQLNP--------AFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp --------------------------------------------------
T ss_pred CCccCCCCceEec---ccccc--------ccceeecccCccCceeecCCc
Confidence 2333332222211 11211 122345678889999999864
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.6e-27 Score=214.48 Aligned_cols=243 Identities=16% Similarity=0.227 Sum_probs=184.1
Q ss_pred eecceeEEEEEcCc-----eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEee
Q 044557 66 VGKGAVKSLVVLAD-----KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVH 140 (362)
Q Consensus 66 ~~~~~v~~i~~~~~-----~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (362)
.|.+.|.++.+.++ .|++++.||.|++|++...... ....+..
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~--------------------------------~~~~~~~ 84 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT--------------------------------IPKAQQM 84 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE--------------------------------EEEEEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce--------------------------------eEEEecc
Confidence 45778999998864 5999999999999998752210 0122346
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEE--cCCCc-EEEEeCCCeEEEEeCCCCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVAL--SDDGD-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~--~~~~~-~~s~~~dg~i~iw~~~~~~ 217 (362)
|...|.+++|+|++++|++++.|+.|++||+++++.+... .|...|.+++| +|++. +++++.||.|++||+.++.
T Consensus 85 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 8899999999999999999999999999999999877643 58999999999 88886 8899999999999998775
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC----eEEEee
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD----LVCSGS 293 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~s~s 293 (362)
....+ ..+ ..+.++.+. +..+++++.|+.+++|++...............|...+.++..... .+++++
T Consensus 163 ~~~~~----~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (368)
T 3mmy_A 163 PMMVL----QLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235 (368)
T ss_dssp CSEEE----ECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEE----ecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec
Confidence 44332 222 345555554 5689999999999999998654333322222234444444444443 399999
Q ss_pred CCCcEEEeeCCCCce-eeeeEecCCCC------------cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 294 ADKTIRIWRGIDRNY-TCLAVLEGHRG------------PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 294 ~D~~i~~W~~~~~~~-~~~~~l~~h~~------------~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.|+.|++|+...... ..+..+.+|.. .|.+++|+|++ .+|++|+.||.|++||+..
T Consensus 236 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---------~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 236 IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH---------GTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT---------CCEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC---------CEEEEEccCCeEEEEECCC
Confidence 999999999754322 45667788877 79999998764 4699999999999999864
No 115
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=3.7e-28 Score=216.51 Aligned_cols=215 Identities=20% Similarity=0.291 Sum_probs=172.4
Q ss_pred eeecCceeEEEEecCCCEEEEEECCCcEEEEECCCc----eEEEeeeccCcccEEEEEEcC--CCc-EEEEeCCCeEEEE
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDF----KCLESITNAHDDAINAVALSD--DGD-VYTGSADKKIKVW 211 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~~h~~~v~~v~~~~--~~~-~~s~~~dg~i~iw 211 (362)
.+|.+.|.+++|+|++++|++|+.|+.|++||+.+. +....+ ..|...|.+++|+| ++. +++++.||.|++|
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 479999999999999999999999999999999865 344444 37999999999998 465 8899999999999
Q ss_pred eCCCCCCcc-----eeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEE--E---EE----eecCc
Q 044557 212 RRSPGNKKH-----SLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNIL--V---VG----ALRGH 275 (362)
Q Consensus 212 ~~~~~~~~~-----~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~--~---~~----~~~~h 275 (362)
|+.++.... .....+..|..+|.+++|+|+ +.+|++++.|+.|++||+.+...... . .. ...+|
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 998764321 334456679999999999999 99999999999999999876542110 0 00 01257
Q ss_pred cceeEEEEEeC-----CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc
Q 044557 276 TKSILCMAVVS-----DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD 350 (362)
Q Consensus 276 ~~~v~~~~~~~-----~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~ 350 (362)
...+.++++++ .++++++.|+.+.+|.........+..+.+|...|.+++|+|++.+ ...+|++|+.||.
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~-----~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR-----WYQLIATGCKDGR 241 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC-----SSEEEEEEETTSC
T ss_pred ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC-----cceEEEEEcCCCe
Confidence 78889999864 4899999999998887655555667889999999999999876421 1257999999999
Q ss_pred EEEEecccC
Q 044557 351 IKVWQISFP 359 (362)
Q Consensus 351 i~~W~~~~~ 359 (362)
|++||+...
T Consensus 242 i~iwd~~~~ 250 (351)
T 3f3f_A 242 IRIFKITEK 250 (351)
T ss_dssp EEEEEEEEC
T ss_pred EEEEeCCCC
Confidence 999999653
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.8e-27 Score=219.91 Aligned_cols=203 Identities=15% Similarity=0.094 Sum_probs=163.7
Q ss_pred eecCceeEEEEecCCCEE-EEEECCCcEEEEECC--CceEEEeeec-cCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCC
Q 044557 140 HHVDAVSALALTKDETLL-YSVSWDRTIKIWRTS--DFKCLESITN-AHDDAINAVALSDDGD-VYTGSADKKIKVWRRS 214 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l-~s~s~d~~i~iwd~~--~~~~~~~~~~-~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~ 214 (362)
.|.+.|.+++|+|++++| ++++.|+.|++||+. +++++..+.. .|...|.+++|+|++. +++++.||.|++|++.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 567789999999999996 899999999999998 7777766542 4678899999999997 8899999999999998
Q ss_pred CCCCcceeehhhhccccceeEEEEecC---CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEE
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCD---GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVC 290 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~---~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~ 290 (362)
++.........+.+|...|.+++|+|+ +++|++|+.|+.|++||+.+... ....+.+|...|.+++|+ +.+++
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~~~~sd~~~l~ 256 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI---VDKWLFGHKHFVSSICCGKDYLLL 256 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC---EEEECCCCSSCEEEEEECSTTEEE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce---eeeeecCCCCceEEEEECCCCEEE
Confidence 765432133355679999999999999 99999999999999999986542 112256899999999997 45999
Q ss_pred EeeCCCcEEEeeCCCCceeeeeEecC-------------------------CCCcEEEEEeeecCCccCCCCCceEEEec
Q 044557 291 SGSADKTIRIWRGIDRNYTCLAVLEG-------------------------HRGPVKCLAAAIDNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 291 s~s~D~~i~~W~~~~~~~~~~~~l~~-------------------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 345 (362)
+++.|+.|++|+... .+++..+.. +...|.+++++|++ .+|+++
T Consensus 257 s~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---------~~l~~~ 325 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKT--GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL---------PFVAFF 325 (450)
T ss_dssp EEESSSEEEEEETTT--CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS---------SEEEEE
T ss_pred EEeCCCeEEEEECCC--CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC---------CEEEEE
Confidence 999999999999643 444555542 34578888887653 356666
Q ss_pred C-CCCcEEEEec
Q 044557 346 S-LDCDIKVWQI 356 (362)
Q Consensus 346 s-~D~~i~~W~~ 356 (362)
+ .|+.|++|++
T Consensus 326 ~~~d~~i~iw~~ 337 (450)
T 2vdu_B 326 VEATKCIIILEM 337 (450)
T ss_dssp ETTCSEEEEEEE
T ss_pred ECCCCeEEEEEe
Confidence 6 8999999999
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.8e-28 Score=222.71 Aligned_cols=270 Identities=7% Similarity=0.009 Sum_probs=189.5
Q ss_pred cceeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEEec
Q 044557 9 HHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSAHQ 86 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~~~ 86 (362)
.+..++++||.+.|.+++|++.- .++++++|+.+. ...... .+...|.++.++++. |++++.
T Consensus 42 ~~~~~~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~---~~~~~~--------~~~~~V~~vawSPdG~~LAs~s~ 105 (588)
T 2j04_A 42 PKYAKDINCNSKNLFHVKEFPLE-----FENKLDFELAQQ---NGLLNS--------QPVCYPRVCKPSPIDDWMAVLSN 105 (588)
T ss_dssp ECCCSCCSSBGGGTEEEEEECCC-----CCCTTTTSCCCS---SCSSTT--------SCSCCEEEEEECSSSSCEEEEET
T ss_pred ccccceecCCCccEEEEEECCCC-----CcceEEEEeCCC---ceEeec--------CCCCcEEEEEECCCCCEEEEEeC
Confidence 34445678999999999996532 556655555332 111110 124578888888764 999999
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcE
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTI 166 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i 166 (362)
||+|++|+.+. .+..+. ... .--...+.+++|+|||++||+|+.||+|
T Consensus 106 dg~V~iwd~~~---------~l~~l~-~~~----------------------~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 106 NGNVSVFKDNK---------MLTNLD-SKG----------------------NLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp TSCEEEEETTE---------EEEECC-CSS----------------------CSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCcEEEEeCCc---------eeeecc-CCC----------------------ccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 99999998532 111110 000 0001358899999999999999999999
Q ss_pred EEEECCCce-------EEEeee---ccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh-hccccceeE
Q 044557 167 KIWRTSDFK-------CLESIT---NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL-ERHNSGINA 235 (362)
Q Consensus 167 ~iwd~~~~~-------~~~~~~---~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~h~~~v~~ 235 (362)
+|||+.+++ .+.++. .+|...|.+++|+|+| +++++.|++|++|++...... .....+ ..|...|.+
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~-~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQ-PVSRMIQNASRRKITD 231 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSC-CCEEEEECCCSSCCCC
T ss_pred EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccc-cceeeecccccCcEEE
Confidence 999998874 245552 4688899999999999 999999999999999765421 111223 368889999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE--eCC--eEEEeeCCCcEEEeeCCC------
Q 044557 236 LALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV--VSD--LVCSGSADKTIRIWRGID------ 305 (362)
Q Consensus 236 i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~--~~~s~s~D~~i~~W~~~~------ 305 (362)
++|+ |+.|++++ |++|++||..... .. ....+|...|..+++ +++ .++++++||+ |+|....
T Consensus 232 vaFs--g~~LASa~-~~tIkLWd~~~~~--~~--~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd 303 (588)
T 2j04_A 232 LKIV--DYKVVLTC-PGYVHKIDLKNYS--IS--SLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTAD 303 (588)
T ss_dssp EEEE--TTEEEEEC-SSEEEEEETTTTE--EE--EEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECC
T ss_pred EEEE--CCEEEEEe-CCeEEEEECCCCe--EE--EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCC
Confidence 9999 68999998 7999999987532 21 122389999999999 876 6999999999 9997421
Q ss_pred ---------------CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 306 ---------------RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 306 ---------------~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
..+..+..+.+ ...|.+++|+|++ +++|+++
T Consensus 304 ~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG---------~~lA~~~ 349 (588)
T 2j04_A 304 NIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDG---------YSIAIVY 349 (588)
T ss_dssp CSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTS---------SEEEEEE
T ss_pred ceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCC---------CEEEEEE
Confidence 00111222333 5569999998775 4577765
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4e-28 Score=217.53 Aligned_cols=226 Identities=8% Similarity=-0.037 Sum_probs=163.7
Q ss_pred CceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 78 ADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 78 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
+..+++++.||+|++||++.+.... .+ ....|.++.++|+ +
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~----~~--------------------------------~~~~v~~~~~~~~---~ 88 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTIT----TI--------------------------------TTPNPRTGGEHPA---I 88 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEE----EE--------------------------------EEECCCTTCCCCS---E
T ss_pred CCEEEEECCCCcEEEEECCCCcEEE----EE--------------------------------ecCCceeeeeCCc---e
Confidence 3459999999999999997654210 00 0234556667777 8
Q ss_pred EEEECCCcEEEEECC---------CceEEEeeeccCcccEEEEEEcC--CCc-EEEEeCCCeEEEEeCCCCCCcceeehh
Q 044557 158 YSVSWDRTIKIWRTS---------DFKCLESITNAHDDAINAVALSD--DGD-VYTGSADKKIKVWRRSPGNKKHSLVDV 225 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~---------~~~~~~~~~~~h~~~v~~v~~~~--~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~ 225 (362)
++++.|++|++|+.. +.+.+......|...|.+++|+| ++. +++++.||+|++||+.++..... .
T Consensus 89 ~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~---~ 165 (343)
T 3lrv_A 89 ISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV---H 165 (343)
T ss_dssp EEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE---E
T ss_pred EEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE---E
Confidence 999999999999765 44545556667878999999999 886 78899999999999987653211 1
Q ss_pred hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCC--eEEEeeCCCcEEEee
Q 044557 226 LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSD--LVCSGSADKTIRIWR 302 (362)
Q Consensus 226 ~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~--~~~s~s~D~~i~~W~ 302 (362)
...|...|.+++|+|+|.+|++|+.|+.|++||+++.... ...+.+ |...|.+++|+++ ++++++ |+.|++||
T Consensus 166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd 241 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA---SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFD 241 (343)
T ss_dssp CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC---CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC---ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEE
Confidence 1235668999999999999999999999999999876532 123566 9999999999865 889999 45999999
Q ss_pred CCCCce-eeeeEecCCCCcEE--EEEeeecCCccCCCCCceEEEecCC-CCcEEEEeccc
Q 044557 303 GIDRNY-TCLAVLEGHRGPVK--CLAAAIDNDRCDSSDTSYLVCSGSL-DCDIKVWQISF 358 (362)
Q Consensus 303 ~~~~~~-~~~~~l~~h~~~v~--~~~~~~~~~~~~~~~~~~~l~s~s~-D~~i~~W~~~~ 358 (362)
...... ..+..+..|...+. +++|+|++ .+|++++. |+.|++|++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 242 LRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG---------KNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp TTSSTTCBSSCCCBC-----CCEEEEECTTS---------SEEEEEETTTTEEEEEEECT
T ss_pred cCCCCcceeecccccccccccceEEEECCCC---------CEEEEecCCCCcEEEEEEcc
Confidence 643221 11222333545554 58886553 56888777 99999999854
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.9e-27 Score=233.31 Aligned_cols=211 Identities=21% Similarity=0.294 Sum_probs=172.5
Q ss_pred EeeecCceeEEEEecCCCEEEEEECCCcEEEEECC--CceEEEeeeccCcccEEEEEEcCC--Cc-EEEEeCCCeEEEEe
Q 044557 138 WVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS--DFKCLESITNAHDDAINAVALSDD--GD-VYTGSADKKIKVWR 212 (362)
Q Consensus 138 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~--~~~~~~~~~~~h~~~v~~v~~~~~--~~-~~s~~~dg~i~iw~ 212 (362)
+.+|.+.|.+++|+|++++|++|+.||.|++||+. +++.+..+ .+|..+|.+++|+|+ +. +++++.||.|++||
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 35799999999999999999999999999999987 44555555 479999999999876 65 88999999999999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecC--CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC----
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCD--GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---- 286 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---- 286 (362)
+.++.. .....+..|..+|++++|+|+ +..+++|+.||.|++||+....... ...+.+|...|.++.+++
T Consensus 84 ~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~--~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 84 EENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC--CEEEECCSSCEEEEEECCCC--
T ss_pred CCCCcc--cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc--eeEeecCCCceEEEEecCcccc
Confidence 987531 233445679999999999999 9999999999999999998653221 224568999999999976
Q ss_pred -----------CeEEEeeCCCcEEEeeCCCC--ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEE
Q 044557 287 -----------DLVCSGSADKTIRIWRGIDR--NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKV 353 (362)
Q Consensus 287 -----------~~~~s~s~D~~i~~W~~~~~--~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~ 353 (362)
.++++|+.||.|++|+.... ...+...+.+|...|.+++|+|+. ..+.+|++|+.||+|++
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV------LLRSYLASVSQDRTCII 233 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC------SSSEEEEEEESSSCEEE
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC------CCCCEEEEEecCCEEEE
Confidence 48999999999999986432 236677899999999999998762 11467999999999999
Q ss_pred EecccC
Q 044557 354 WQISFP 359 (362)
Q Consensus 354 W~~~~~ 359 (362)
||+...
T Consensus 234 wd~~~~ 239 (753)
T 3jro_A 234 WTQDNE 239 (753)
T ss_dssp EEESSS
T ss_pred ecCCCC
Confidence 999653
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=4.9e-25 Score=203.31 Aligned_cols=286 Identities=14% Similarity=0.119 Sum_probs=200.7
Q ss_pred ceeeecccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe
Q 044557 10 HCLTTLKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~ 85 (362)
+.+..+..+. .+.+++++ +.++++++.|++|++||+.+.... .... ......+.+.+.++.+.++ .+++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~~~s~~ 188 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSP--PEKYKKKLGFVETISIPEHNELWVSQM 188 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE--EECC--CHHHHTTCCEEEEEEEGGGTEEEEEEG
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecC--cccccccCCceeEEEEcCCCEEEEEEC
Confidence 4455555554 34578884 568888999999999998764321 1000 0001123456777777543 478888
Q ss_pred cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE-EECCC
Q 044557 86 QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS-VSWDR 164 (362)
Q Consensus 86 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~d~ 164 (362)
.|+.|++||++..... ..+..|...+.+++|+|+++.+++ ++.|+
T Consensus 189 ~d~~v~~~d~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (433)
T 3bws_A 189 QANAVHVFDLKTLAYK----------------------------------ATVDLTGKWSKILLYDPIRDLVYCSNWISE 234 (433)
T ss_dssp GGTEEEEEETTTCCEE----------------------------------EEEECSSSSEEEEEEETTTTEEEEEETTTT
T ss_pred CCCEEEEEECCCceEE----------------------------------EEEcCCCCCeeEEEEcCCCCEEEEEecCCC
Confidence 9999999998653310 111246678899999999998755 45899
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe--------CCCeEEEEeCCCCCCcceeehhhhccccceeE
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS--------ADKKIKVWRRSPGNKKHSLVDVLERHNSGINA 235 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~--------~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~ 235 (362)
.|++||+++++.+..+. +...+.+++|+|++. +++++ .||.|++||+.++.... . ..|...+..
T Consensus 235 ~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~----~-~~~~~~~~~ 307 (433)
T 3bws_A 235 DISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID----T-IGPPGNKRH 307 (433)
T ss_dssp EEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE----E-EEEEECEEE
T ss_pred cEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe----e-ccCCCCcce
Confidence 99999999998877664 345689999999996 66666 48999999998764221 1 245667889
Q ss_pred EEEecCCCEE-EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeC---------------CCc
Q 044557 236 LALSCDGSVL-YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSA---------------DKT 297 (362)
Q Consensus 236 i~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~---------------D~~ 297 (362)
++|+|+++.+ ++++.|+.|++||+.+.+ ....+. +...+.+++++++ ++++++. ||.
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~----~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~ 382 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKK----VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK 382 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTTTE----EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCCCc----EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE
Confidence 9999999755 666899999999997532 222333 5667889999865 6666665 579
Q ss_pred EEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 298 IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|++|+... .+.+..+.+ ...+.+++|+|++. .++++++.|++|++|+++
T Consensus 383 v~~~d~~~--~~~~~~~~~-~~~~~~~~~s~dg~--------~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 383 VYVIDTTT--DTVKEFWEA-GNQPTGLDVSPDNR--------YLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEETTT--TEEEEEEEC-SSSEEEEEECTTSC--------EEEEEETTTTEEEEEEET
T ss_pred EEEEECCC--CcEEEEecC-CCCCceEEEcCCCC--------EEEEEECCCCeEEEEEec
Confidence 99999643 455666665 45789999987643 234444569999999985
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.1e-24 Score=198.28 Aligned_cols=261 Identities=14% Similarity=0.136 Sum_probs=189.2
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--ee-EEEecCCcEEEEecCCCCCCcccce
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KL-FSAHQDHKIRVWKINNQEPDHQKYT 106 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~s~~~dg~i~~w~~~~~~~~~~~~~ 106 (362)
..+++++.|++|++||+.+.. ....+ . +...+.++.+.++ .+ ++++.|++|++||+..++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~--~~~~~-------~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~------ 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK--VTATI-------P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------ 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE--EEEEE-------E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE------
T ss_pred EEEEEcCCCCEEEEEECCCCe--EEEEe-------e-cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE------
Confidence 468899999999999987542 11111 1 1234677778765 35 5666899999999865431
Q ss_pred eeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE-EECCCcEEEEECCCceEEEeeeccCc
Q 044557 107 RLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS-VSWDRTIKIWRTSDFKCLESITNAHD 185 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~h~ 185 (362)
.. . ..+...+.+++|+|++++|+. ++.|+.|++||+.+++.+..+. +.
T Consensus 67 -~~---------------------------~-~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~ 115 (391)
T 1l0q_A 67 -IA---------------------------T-VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TG 115 (391)
T ss_dssp -EE---------------------------E-EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CS
T ss_pred -EE---------------------------E-EECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CC
Confidence 00 0 122347899999999998755 4567999999999998877664 34
Q ss_pred ccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEE-EEEcCCCcEEEEeccCC
Q 044557 186 DAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVL-YSGACDRSIIVWEKEED 262 (362)
Q Consensus 186 ~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~s~~~d~~i~~wd~~~~ 262 (362)
..+.+++|+|+++ + ++++.|+.|++||+.++... ..+.. ...+..++|+|++++| ++++.|+.|++||+.+.
T Consensus 116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI----NTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----EEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE----EEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 5789999999997 5 57888999999999876432 22222 3456899999999988 57788999999999764
Q ss_pred CCcEEEEEeecCccceeEEEEEeCC--eEEEee---CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCC
Q 044557 263 DGNILVVGALRGHTKSILCMAVVSD--LVCSGS---ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD 337 (362)
Q Consensus 263 ~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s---~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~ 337 (362)
. ....+. +...+.+++++++ ++++++ .|+.|++|+... .+.+..+..|. .+.+++|+|++.
T Consensus 191 ~----~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~------ 256 (391)
T 1l0q_A 191 S----VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT--NKITARIPVGP-DPAGIAVTPDGK------ 256 (391)
T ss_dssp E----EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT--TEEEEEEECCS-SEEEEEECTTSS------
T ss_pred e----EEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC--CeEEEEEecCC-CccEEEEccCCC------
Confidence 2 222232 4557888888754 676666 799999999643 45677777765 478888876643
Q ss_pred CceEEEecCCCCcEEEEeccc
Q 044557 338 TSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 338 ~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.++++++.|+.|++||+..
T Consensus 257 --~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 257 --KVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp --EEEEEETTTTEEEEEETTT
T ss_pred --EEEEEcCCCCEEEEEECCC
Confidence 3557889999999999863
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1.2e-25 Score=202.37 Aligned_cols=233 Identities=15% Similarity=0.160 Sum_probs=170.5
Q ss_pred eecceeEEEEEcCce--eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC
Q 044557 66 VGKGAVKSLVVLADK--LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD 143 (362)
Q Consensus 66 ~~~~~v~~i~~~~~~--l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 143 (362)
.|...|.++.++++. |++++.+ .+++|+++.... . ...+..
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~-------~-----------------------------~~~~~~ 59 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAH-------I-----------------------------MSQEMR 59 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEE-------E-----------------------------EEEECS
T ss_pred cCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcce-------e-----------------------------eeeecC
Confidence 356789999998764 5555544 589999753210 0 011223
Q ss_pred ceeEEEEecCCCEE-EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCC-CCcce
Q 044557 144 AVSALALTKDETLL-YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPG-NKKHS 221 (362)
Q Consensus 144 ~v~~~~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~-~~~~~ 221 (362)
.+..+++.++++.+ ++++.|++|++||..+++++..+. +...|.+++++++..++ +.|+.|++||+.+. .....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITD 135 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSC
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEE
Confidence 46778888888877 567788999999999999888775 66789999999875333 35889999999876 32222
Q ss_pred eehhhhccccceeEEEEecCCCEEEE--EcCCCcEEEEeccCCCC-----------cEEE-EEeecCccceeEEEEEeCC
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYS--GACDRSIIVWEKEEDDG-----------NILV-VGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s--~~~d~~i~~wd~~~~~~-----------~~~~-~~~~~~h~~~v~~~~~~~~ 287 (362)
+.. +...+++++ .+++. |+.||.|++||+..... .... +..+.+|...|.+++|+++
T Consensus 136 ----~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~ 206 (355)
T 3vu4_A 136 ----DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK 206 (355)
T ss_dssp ----CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred ----ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence 222 444566777 56665 68999999999976330 0001 3567899999999999865
Q ss_pred --eEEEeeCCCc-EEEeeCCCCceeeeeEec-C-CCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 288 --LVCSGSADKT-IRIWRGIDRNYTCLAVLE-G-HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 288 --~~~s~s~D~~-i~~W~~~~~~~~~~~~l~-~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
+++|++.|++ |++||.. ..+++..+. | |...|.+++|+|++ .+|++||.|++|++||+..+
T Consensus 207 g~~l~s~s~d~~~v~iwd~~--~~~~~~~~~~g~h~~~v~~~~~s~~~---------~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 207 SDMVATCSQDGTIIRVFKTE--DGVLVREFRRGLDRADVVDMKWSTDG---------SKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp SSEEEEEETTCSEEEEEETT--TCCEEEEEECTTCCSCEEEEEECTTS---------CEEEEEETTCEEEEEESSCC
T ss_pred CCEEEEEeCCCCEEEEEECC--CCcEEEEEEcCCCCCcEEEEEECCCC---------CEEEEEECCCEEEEEEccCC
Confidence 8999999999 9999964 456788888 6 99999999998764 46999999999999999654
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=4.6e-26 Score=198.69 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=118.5
Q ss_pred eeecCceeEEEEec---CCCEEEEEECCCcEEEEECCCceEEEeeeccC--cccEEEEEEcCCCcE-------------E
Q 044557 139 VHHVDAVSALALTK---DETLLYSVSWDRTIKIWRTSDFKCLESITNAH--DDAINAVALSDDGDV-------------Y 200 (362)
Q Consensus 139 ~~h~~~v~~~~~~~---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~-------------~ 200 (362)
..|...+..++|+| ++.+|++++.|++|+|||++++++++++...| ...+.+++|+|+|.+ +
T Consensus 175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------
T ss_pred ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 35777888899988 77999999999999999999999999886332 236778899999873 4
Q ss_pred EEeCCCeEEEEeCCCCCCcceeehh-hhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee
Q 044557 201 TGSADKKIKVWRRSPGNKKHSLVDV-LERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI 279 (362)
Q Consensus 201 s~~~dg~i~iw~~~~~~~~~~~~~~-~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v 279 (362)
+|+.|++|++||..++.....+... ..+|...+.+. +.++..+++|+.|++|++||+.+++ .+.++.+|...+
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk----~l~tL~gH~~~v 328 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQ----CTALLPPVSDQH 328 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCS----EEEEECCC--CC
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCc----EEEEecCCCCCe
Confidence 6789999999999877533221111 23555554333 3448899999999999999998754 355678898776
Q ss_pred E-EEEEeCC--eEEEeeCCCcEEEeeC
Q 044557 280 L-CMAVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 280 ~-~~~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
. +++|+++ +|+|||.|++||||+.
T Consensus 329 vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5 5889876 8999999999999983
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.4e-26 Score=211.47 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=153.1
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC----------ceeEEEecCCcEEEEecCCC
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA----------DKLFSAHQDHKIRVWKINNQ 98 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----------~~l~s~~~dg~i~~w~~~~~ 98 (362)
+.+|++|+.|++||+||+.......... ...+..|.+.|.++.+.+ ..|++++.|++|++||+...
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~----~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHV----LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEE----ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeee----ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 5689999999999999986543111100 011234677888888853 35999999999999998643
Q ss_pred CCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEE
Q 044557 99 EPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCL 177 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~ 177 (362)
.+ ......|...+.+++|+|++. +|++|+.|++|++||+++++..
T Consensus 177 ~~----------------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 177 GP----------------------------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA 222 (393)
T ss_dssp EE----------------------------------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred ce----------------------------------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence 21 112346788999999999874 8999999999999999876543
Q ss_pred Eee------------------------eccCcccEEEEEEc-CCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhcccc
Q 044557 178 ESI------------------------TNAHDDAINAVALS-DDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS 231 (362)
Q Consensus 178 ~~~------------------------~~~h~~~v~~v~~~-~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~ 231 (362)
... ..+|...+.++.|+ |++. +++++.|+++++||+..+.....+ ..|..
T Consensus 223 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l----~~~~~ 298 (393)
T 4gq1_A 223 EENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI----SDSTM 298 (393)
T ss_dssp --------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------
T ss_pred ccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE----eeecC
Confidence 221 12467778889986 6776 889999999999998765432211 12222
Q ss_pred cee------------------EEEEec--CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eE
Q 044557 232 GIN------------------ALALSC--DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LV 289 (362)
Q Consensus 232 ~v~------------------~i~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~ 289 (362)
.+. ...++| ++.++++|+.|++|++||..++.... ...+|...|.+++|+++ +|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~----~~~~~~~~V~svafspdG~~L 374 (393)
T 4gq1_A 299 KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS----IPIQLGMPIVDFCWHQDGSHL 374 (393)
T ss_dssp -----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE----EEEECSSCEEEEEECTTSSEE
T ss_pred ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE----EecCCCCcEEEEEEcCCCCEE
Confidence 222 223333 44577888999999999998765432 24467889999999875 88
Q ss_pred EEeeCCCcEEEee
Q 044557 290 CSGSADKTIRIWR 302 (362)
Q Consensus 290 ~s~s~D~~i~~W~ 302 (362)
|+++.|| +.+|+
T Consensus 375 A~as~~G-v~lvr 386 (393)
T 4gq1_A 375 AIATEGS-VLLTR 386 (393)
T ss_dssp EEEESSE-EEEEE
T ss_pred EEEeCCC-eEEEE
Confidence 9988765 66665
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=2.1e-23 Score=189.76 Aligned_cols=290 Identities=14% Similarity=0.151 Sum_probs=201.6
Q ss_pred ccceeeecccCccceeeeEec--CcEE-EEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeE
Q 044557 8 DHHCLTTLKGHNSYVSSLALA--GKFL-YTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLF 82 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~~--~~~l-~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 82 (362)
..+++.++.+|.. +.+++++ ++++ ++++.|++|++||+.+... ...+ . ....+.++.+.++ .++
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--~~~~-------~-~~~~v~~~~~spdg~~l~ 89 (391)
T 1l0q_A 21 SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATV-------P-AGSSPQGVAVSPDGKQVY 89 (391)
T ss_dssp TTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEE-------E-CSSSEEEEEECTTSSEEE
T ss_pred CCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeE--EEEE-------E-CCCCccceEECCCCCEEE
Confidence 4567778888765 7999994 6655 7888999999999865331 1111 1 1236777878754 465
Q ss_pred E-EecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE-EEE
Q 044557 83 S-AHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL-YSV 160 (362)
Q Consensus 83 s-~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~ 160 (362)
. ++.++.|++||+..++. .. ...+...+.+++|+|+++.| +++
T Consensus 90 ~~~~~~~~v~v~d~~~~~~-------~~----------------------------~~~~~~~~~~~~~s~dg~~l~~~~ 134 (391)
T 1l0q_A 90 VTNMASSTLSVIDTTSNTV-------AG----------------------------TVKTGKSPLGLALSPDGKKLYVTN 134 (391)
T ss_dssp EEETTTTEEEEEETTTTEE-------EE----------------------------EEECSSSEEEEEECTTSSEEEEEE
T ss_pred EEECCCCEEEEEECCCCeE-------EE----------------------------EEeCCCCcceEEECCCCCEEEEEe
Confidence 4 45679999999875421 00 01233467899999999977 678
Q ss_pred ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEE
Q 044557 161 SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALAL 238 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 238 (362)
+.|+.|++||+.+++.+..+. .+ ..+.+++|+|++. + ++++.|+.|++||+.++.... .+ .+...+.+++|
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~-~~~~~~~~~~~ 207 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVS-VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID----TV-KVEAAPSGIAV 207 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EE-ECSSEEEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEe-cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE----EE-ecCCCccceEE
Confidence 889999999999998887765 23 4578999999996 4 577889999999998764322 22 24567899999
Q ss_pred ecCCCEEEEEc---CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eE-EEeeCCCcEEEeeCCCCceeeee
Q 044557 239 SCDGSVLYSGA---CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LV-CSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 239 s~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~-~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
+|++++|++++ .++.|++||+.+.+ .+..+..|. .+.+++++++ .+ ++++.|+.|++|+.. ..+.++
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~----~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~--~~~~~~ 280 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNK----ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA--TNTITA 280 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTE----EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT--TTEEEE
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCCe----EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC--CCcEEE
Confidence 99999999888 68999999997542 233455554 4678888754 44 788999999999964 356677
Q ss_pred EecCCCCcEE---EEEeeecCCccC-----CCC--------CceEEEecCCCCcEEEEecc
Q 044557 313 VLEGHRGPVK---CLAAAIDNDRCD-----SSD--------TSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 313 ~l~~h~~~v~---~~~~~~~~~~~~-----~~~--------~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+..|..+.. .+.+.|++.... .+. ....+.+.+.|.++++|++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 341 (391)
T 1l0q_A 281 TMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFG 341 (391)
T ss_dssp EEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECS
T ss_pred EEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECC
Confidence 7777765432 123332211100 000 01457788889999999984
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=9.7e-23 Score=187.23 Aligned_cols=195 Identities=13% Similarity=0.023 Sum_probs=146.1
Q ss_pred eeecCceeEEEEecCCCEEEEEECCC---cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EE-EEeCCC--eEEEE
Q 044557 139 VHHVDAVSALALTKDETLLYSVSWDR---TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VY-TGSADK--KIKVW 211 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~-s~~~dg--~i~iw 211 (362)
..|...+.+++|+||++.|++++.|+ .|++||+.++++.. +. .|...+.+++|+|+|+ ++ +++.|+ .|.+|
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~ 252 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 252 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-ee-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence 35778899999999999999999885 99999999887654 33 5777899999999997 55 566665 49999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-CC--cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-DR--SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD- 287 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 287 (362)
|+.++.. ..+..|...+.+++|+|||++|+.++. ++ .|.+||+..+.. ..+..|...+.+++|+++
T Consensus 253 d~~~~~~-----~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdG 322 (415)
T 2hqs_A 253 DLASGQI-----RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSSDG 322 (415)
T ss_dssp ETTTCCE-----EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECTTS
T ss_pred ECCCCCE-----EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECCCC
Confidence 9887542 233457788999999999999998876 45 577778765431 224456677888898865
Q ss_pred -eEEEeeCC---CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCC---cEEEEeccc
Q 044557 288 -LVCSGSAD---KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC---DIKVWQISF 358 (362)
Q Consensus 288 -~~~s~s~D---~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~---~i~~W~~~~ 358 (362)
+++.++.+ ..|++|+..... ...+..|. .+.+++|+|++ .+|++++.|+ .|++||+..
T Consensus 323 ~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~~-~~~~~~~spdg---------~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 323 KFMVMVSSNGGQQHIAKQDLATGG---VQVLSSTF-LDETPSLAPNG---------TMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp SEEEEEEECSSCEEEEEEETTTCC---EEECCCSS-SCEEEEECTTS---------SEEEEEEEETTEEEEEEEETTS
T ss_pred CEEEEEECcCCceEEEEEECCCCC---EEEecCCC-CcCCeEEcCCC---------CEEEEEEcCCCccEEEEEECCC
Confidence 67776654 589999965432 23466665 89999998765 3577777776 799999864
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=3.8e-23 Score=190.60 Aligned_cols=245 Identities=13% Similarity=0.117 Sum_probs=173.7
Q ss_pred eEEEEEcCc-e-eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEE
Q 044557 71 VKSLVVLAD-K-LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSAL 148 (362)
Q Consensus 71 v~~i~~~~~-~-l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 148 (362)
+.++.+.++ . +++++.|+.|++||+..++.. ...+ ...+.+|...+.++
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~-------~~~~----------------------~~~~~~~~~~v~~~ 175 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV-------RLSP----------------------PEKYKKKLGFVETI 175 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE-------EECC----------------------CHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe-------eecC----------------------cccccccCCceeEE
Confidence 345666543 3 566677889999998765421 0000 00112467789999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 149 ALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 149 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+|+|+++++++++.|+.|++||+++++.+..+. .|...+.+++|+|++. + ++++.|+.|++||+.++... ..+
T Consensus 176 ~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~----~~~ 250 (433)
T 3bws_A 176 SIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI----RKT 250 (433)
T ss_dssp EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EEC
T ss_pred EEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE----EEe
Confidence 999999999999999999999999988877775 6888999999999987 5 35558999999999876432 222
Q ss_pred hccccceeEEEEecCCCEEEEEc--------CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCC
Q 044557 227 ERHNSGINALALSCDGSVLYSGA--------CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSAD 295 (362)
Q Consensus 227 ~~h~~~v~~i~~s~~~~~l~s~~--------~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D 295 (362)
. +...+.+++|+|+|++|++++ .|+.|++||+.+++ . ... ..|...+.+++++++ ++++++.|
T Consensus 251 ~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~--~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~ 324 (433)
T 3bws_A 251 D-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK--L--IDT-IGPPGNKRHIVSGNTENKIYVSDMCC 324 (433)
T ss_dssp C-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--E--EEE-EEEEECEEEEEECSSTTEEEEEETTT
T ss_pred c-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--E--Eee-ccCCCCcceEEECCCCCEEEEEecCC
Confidence 2 244589999999999999988 58999999997542 1 111 245567888888754 56788999
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCC------CceEEEecCCCCcEEEEeccc
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSD------TSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~------~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+.|++|+... .+.+..+. |...+.+++|+|++....... ...++++|+.||.|++||+..
T Consensus 325 ~~v~v~d~~~--~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 325 SKIEVYDLKE--KKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp TEEEEEETTT--TEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred CEEEEEECCC--CcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 9999999643 44555554 778899999987754210000 011223334478999999853
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=8e-22 Score=181.11 Aligned_cols=262 Identities=13% Similarity=0.052 Sum_probs=189.7
Q ss_pred cccee--eecccCccceeeeEec----------------CcEEEEecCC------CeEEEeecCCCCcccceeeecccee
Q 044557 8 DHHCL--TTLKGHNSYVSSLALA----------------GKFLYTGSSD------NEVRSWDCNTFSSELDQEFLSNNNI 63 (362)
Q Consensus 8 ~~~~~--~tl~gH~~~V~~l~~~----------------~~~l~t~s~D------g~i~vWd~~~~~~~~~~~~~~~~~~ 63 (362)
..+++ .+|.+|...+..+++. +..++.++.+ ++|++||+.... ...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~----------~~~ 173 (415)
T 2hqs_A 104 PGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN----------QFV 173 (415)
T ss_dssp TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS----------CEE
T ss_pred CCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC----------CEE
Confidence 34555 5689999988887653 5667666654 799999986421 112
Q ss_pred EEeecceeEEEEEcCc--eeEEEecCC---cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEE
Q 044557 64 VAVGKGAVKSLVVLAD--KLFSAHQDH---KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTW 138 (362)
Q Consensus 64 ~~~~~~~v~~i~~~~~--~l~s~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
+..+...+.++.++++ .|++++.++ .|++||+..++.. .+
T Consensus 174 l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-----------------------------------~l 218 (415)
T 2hqs_A 174 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-----------------------------------QV 218 (415)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-----------------------------------EE
T ss_pred EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-----------------------------------Ee
Confidence 2335667888888765 488888775 9999998754310 11
Q ss_pred eeecCceeEEEEecCCCEEE-EEECCCc--EEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeC-CC--eEEEE
Q 044557 139 VHHVDAVSALALTKDETLLY-SVSWDRT--IKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSA-DK--KIKVW 211 (362)
Q Consensus 139 ~~h~~~v~~~~~~~~~~~l~-s~s~d~~--i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~-dg--~i~iw 211 (362)
..|...+.+++|+||++.|+ +++.|+. |++||+.+++.. .+. .|...+.+++|+|+|+ ++.++. ++ .|.+|
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-CCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 23556788999999999877 6666665 999999887763 343 5778899999999997 666664 45 67777
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC---CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD---RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD- 287 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 287 (362)
|+.++... .+..+...+.+++|+|||++|++++.+ ..|++||+.+++ . ..+..|. .+.+++|+++
T Consensus 297 d~~~~~~~-----~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~--~---~~l~~~~-~~~~~~~spdg 365 (415)
T 2hqs_A 297 NINGGAPQ-----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--V---QVLSSTF-LDETPSLAPNG 365 (415)
T ss_dssp ETTSSCCE-----ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--E---EECCCSS-SCEEEEECTTS
T ss_pred ECCCCCEE-----EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC--E---EEecCCC-CcCCeEEcCCC
Confidence 88765421 123456678899999999999988865 589999998643 2 2344454 7888899865
Q ss_pred -eEEEeeCCC---cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 288 -LVCSGSADK---TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 288 -~~~s~s~D~---~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
++++++.|+ .|.+|+.. ......+.+|.+.|.+++|+|..
T Consensus 366 ~~l~~~s~~~~~~~l~~~d~~---g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 366 TMVIYSSSQGMGSVLNLVSTD---GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp SEEEEEEEETTEEEEEEEETT---SCCEEECCCSSSEEEEEEECCCC
T ss_pred CEEEEEEcCCCccEEEEEECC---CCcEEEeeCCCCCCcCCcccccc
Confidence 788888777 79999864 23467788999999999999863
No 129
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=8.6e-21 Score=168.86 Aligned_cols=278 Identities=15% Similarity=0.240 Sum_probs=174.9
Q ss_pred EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC-CcEEEEecCCCCCCccccee
Q 044557 31 FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD-HKIRVWKINNQEPDHQKYTR 107 (362)
Q Consensus 31 ~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d-g~i~~w~~~~~~~~~~~~~~ 107 (362)
.+++++.|+.|++||+.. ....... ....+...+..+.+.++ .|++++.+ +.|++|+++...... ..
T Consensus 7 l~~~~~~~~~v~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---~~ 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNH-EGALTLT------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---TF 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECT-TSCEEEE------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---EE
T ss_pred EEEeCCCCCeEEEEEECC-CCcEEEe------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---ee
Confidence 455558899999999853 1111100 00112345666777654 48888876 999999986221100 00
Q ss_pred eeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC-CCcEEEEECC---CceEEEeeecc
Q 044557 108 LATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW-DRTIKIWRTS---DFKCLESITNA 183 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-d~~i~iwd~~---~~~~~~~~~~~ 183 (362)
+.. ......+..++|+|++++|++++. ++.|.+||+. ..+.+..+.
T Consensus 77 ~~~----------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-- 126 (343)
T 1ri6_A 77 AAE----------------------------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-- 126 (343)
T ss_dssp EEE----------------------------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--
T ss_pred ccc----------------------------cccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--
Confidence 000 011236788999999998877665 8899999994 333444332
Q ss_pred CcccEEEEEEcCCCc-EEEEe-CCCeEEEEeCCCCCCcceee--hhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEe
Q 044557 184 HDDAINAVALSDDGD-VYTGS-ADKKIKVWRRSPGNKKHSLV--DVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWE 258 (362)
Q Consensus 184 h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~~~~~~~~~~--~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd 258 (362)
....+.+++|+|+++ +++++ .++.|.+||+.+........ .........+..++|+|+|++|+++ ..++.|++|+
T Consensus 127 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 127 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 234578899999997 66665 89999999997622111111 1111123467889999999977655 4899999999
Q ss_pred ccCCCCcEEEEEee---c-Cc--cceeEEEEEeCC--e-EEEeeCCCcEEEeeCC--CCceeeeeEecCCCCcEEEEEee
Q 044557 259 KEEDDGNILVVGAL---R-GH--TKSILCMAVVSD--L-VCSGSADKTIRIWRGI--DRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 259 ~~~~~~~~~~~~~~---~-~h--~~~v~~~~~~~~--~-~~s~s~D~~i~~W~~~--~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
+............. . ++ ...+..++++++ + +++++.|+.|++|+.. ......+..+..+.. +..++|+
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s 285 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVD 285 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEEC
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEEC
Confidence 96433332222222 2 11 234567888764 4 4467789999999975 234555666665555 8888887
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|++. .+++++..|+.|++|++.
T Consensus 286 ~dg~--------~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 286 HSGK--------YLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TTSS--------EEEEECTTTCEEEEEEEE
T ss_pred CCCC--------EEEEecCCCCeEEEEEEc
Confidence 6543 345555578999999765
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=4.1e-21 Score=182.00 Aligned_cols=276 Identities=11% Similarity=0.141 Sum_probs=193.5
Q ss_pred ceeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEec--C
Q 044557 21 YVSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKI--N 96 (362)
Q Consensus 21 ~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~--~ 96 (362)
++..+...+.++++++.|++|++||..+... ...+ ..+.. +..+.++++ .|++++.|++|++||+ .
T Consensus 141 ~~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~--~~~i-------~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~ 210 (543)
T 1nir_A 141 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKI--VKVI-------DTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK 210 (543)
T ss_dssp CCSCCCGGGEEEEEEGGGTEEEEEETTTCCE--EEEE-------ECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred cccccCCCCEEEEEEcCCCeEEEEECCCceE--EEEE-------ecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 3444555678899999999999999876431 1111 11222 455666654 6999999999999998 3
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEec----CCCEEEEEE-CCCcEEEEEC
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTK----DETLLYSVS-WDRTIKIWRT 171 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~s-~d~~i~iwd~ 171 (362)
+.. .+..+ .+...+..++|+| |+++|++++ .+++|.+||.
T Consensus 211 t~~-------~~~~i----------------------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 211 EPT-------KVAEI----------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp SCE-------EEEEE----------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred CCc-------EEEEE----------------------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec
Confidence 221 01111 1234568899999 999999988 5899999999
Q ss_pred CCceEEEeeecc---------C-cccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 172 SDFKCLESITNA---------H-DDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 172 ~~~~~~~~~~~~---------h-~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
.+++++..+... | ...+..+.++|++. +++...+++|.+||..+..... ...+ .+...+..+.|+
T Consensus 256 ~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i-~~~~~~~~~~~s 332 (543)
T 1nir_A 256 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSI-GAAPFLHDGGWD 332 (543)
T ss_dssp TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEE-ECCSSCCCEEEC
T ss_pred cccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEe-ccCcCccCceEC
Confidence 999888776421 2 22688999999775 5677889999999998754322 1111 245567789999
Q ss_pred cCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecC----ccceeEEEEEeCC---eEEEee-CCCcEEEeeCCCC----
Q 044557 240 CDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRG----HTKSILCMAVVSD---LVCSGS-ADKTIRIWRGIDR---- 306 (362)
Q Consensus 240 ~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~---~~~s~s-~D~~i~~W~~~~~---- 306 (362)
|+|++++++ ..+++|.+||..+++ ++..+.. |.+....+ +.++ .++|++ .|++|++|+....
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg~----l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~ 407 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDRR----LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 407 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred CCCCEEEEEecCCCeEEEEECCCCe----EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence 999987755 468999999998643 2333332 55444333 2332 577775 6899999996431
Q ss_pred -ceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC-------CCCcEEEEeccc
Q 044557 307 -NYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS-------LDCDIKVWQISF 358 (362)
Q Consensus 307 -~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s-------~D~~i~~W~~~~ 358 (362)
.+++++++.+|...+..++++|++. +|++++ .|++|.+||+..
T Consensus 408 ~~~~~v~~l~~~g~~~~~v~~~pdg~---------~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 408 YAWKKVAELQGQGGGSLFIKTHPKSS---------HLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp TBTSEEEEEECSCSCCCCEECCTTCC---------EEEECCTTCSSHHHHTCEEEEETTC
T ss_pred hcCeEEEEEEcCCCCceEEEcCCCCC---------cEEEecCCCCCcccCceEEEEECCC
Confidence 2788999999999988899987654 577776 378999999963
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=2.4e-20 Score=176.76 Aligned_cols=305 Identities=12% Similarity=0.085 Sum_probs=198.7
Q ss_pred ccceeeecccCccceeeeEe--cCcEEEEecCCCeEEEeec--CCCCcccceeeeccceeEEeecceeEEEEEcC----c
Q 044557 8 DHHCLTTLKGHNSYVSSLAL--AGKFLYTGSSDNEVRSWDC--NTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA----D 79 (362)
Q Consensus 8 ~~~~~~tl~gH~~~V~~l~~--~~~~l~t~s~Dg~i~vWd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----~ 79 (362)
..+++.++..+.. +..+.+ ++++|++++.|++|++||+ .+.. .... +.. ......+.+++ +
T Consensus 168 t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~~~~-------i~~-g~~p~~va~sp~~~~d 236 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVAE-------IKI-GIEARSVESSKFKGYE 236 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEEE-------EEC-CSEEEEEEECCSTTCT
T ss_pred CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc--EEEE-------Eec-CCCcceEEeCCCcCCC
Confidence 3567788873333 778878 4889999999999999998 4422 1111 111 23456777765 4
Q ss_pred --eeEEEe-cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC-ceeEEEEecCCC
Q 044557 80 --KLFSAH-QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD-AVSALALTKDET 155 (362)
Q Consensus 80 --~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~ 155 (362)
.+++++ .+++|.+||..+.+.. ..++..+.. ......|.+ .+..+.++|++.
T Consensus 237 g~~l~v~~~~~~~v~v~D~~t~~~~-------~~i~~~g~~-----------------~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 237 DRYTIAGAYWPPQFAIMDGETLEPK-------QIVSTRGMT-----------------VDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp TTEEEEEEEESSEEEEEETTTCCEE-------EEEECCEEC-----------------SSSCCEESCCCEEEEEECSSSS
T ss_pred CCEEEEEEccCCeEEEEeccccccc-------eeecccCcc-----------------cCccccccCCceEEEEECCCCC
Confidence 477877 4899999998654421 111100000 000012333 788999999776
Q ss_pred -EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEE-EeCCCeEEEEeCCCCCCcceeehhhhccccc
Q 044557 156 -LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYT-GSADKKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 156 -~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
++++...++.|.+||+.+.+.+......+...+..++|+|+|+ +++ +..+++|.+||..+++....+......|...
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred EEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 5666778899999999876544311223556678899999998 554 4568999999998875433222111225443
Q ss_pred eeEEEEecC-CCEEEEEc-CCCcEEEEeccCCC---CcEEEEEeecCccceeEEEEEeCC--eEEEee-------CCCcE
Q 044557 233 INALALSCD-GSVLYSGA-CDRSIIVWEKEEDD---GNILVVGALRGHTKSILCMAVVSD--LVCSGS-------ADKTI 298 (362)
Q Consensus 233 v~~i~~s~~-~~~l~s~~-~d~~i~~wd~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s-------~D~~i 298 (362)
...+ ++|+ +..++++. .|++|.+||..+.. .....+..+++|...+..++++++ .+.+++ .+++|
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 451 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCE
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceE
Confidence 3333 5777 55666665 58999999997622 113456778888888888888865 788776 27899
Q ss_pred EEeeCCCCceeee-eE--------ecCCCCcEEEEEeeecCCccCCCCCceEEEec----CCCCcEEEEeccc
Q 044557 299 RIWRGIDRNYTCL-AV--------LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG----SLDCDIKVWQISF 358 (362)
Q Consensus 299 ~~W~~~~~~~~~~-~~--------l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~----s~D~~i~~W~~~~ 358 (362)
.+||..... .. .. +..|...+..++|+|+++. +++|. +.|++|.|||...
T Consensus 452 ~v~d~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~--------~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 452 AVFDLKNLD--AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE--------VWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp EEEETTCTT--SCCEEECHHHHHCCCSSCCEEEEEEECSSSSE--------EEEEEECCTTSCCEEEEEETTT
T ss_pred EEEECCCCC--CCeEEeechhhcccCCCCCceEeccCCCCCCE--------EEEEeecCCCCCCeEEEEECCC
Confidence 999975332 22 22 3466789999999887653 34332 3589999999863
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.8e-19 Score=159.89 Aligned_cols=277 Identities=11% Similarity=0.144 Sum_probs=177.2
Q ss_pred CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec-CCcEEEEecCCCCCCcccc
Q 044557 29 GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ-DHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 29 ~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~-dg~i~~w~~~~~~~~~~~~ 105 (362)
+..+++++.+++|++||..+..... . +..+.... .+.+.++ .+++++. ++.|.+||+..+...
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~--~-------~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~---- 75 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILN--Q-------ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK---- 75 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEE--E-------EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----
T ss_pred CEEEEEecCCCeEEEEeCcccceee--e-------EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----
Confidence 3468899999999999987643211 1 11223334 6677654 4666665 889999998754310
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC---cEEEEECCCceEEEeeec
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR---TIKIWRTSDFKCLESITN 182 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~ 182 (362)
. .....+.....+++|+|++++|+++..++ .|.+||+.+++.+..+.
T Consensus 76 --~---------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~- 125 (331)
T 3u4y_A 76 --V---------------------------VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP- 125 (331)
T ss_dssp --E---------------------------EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-
T ss_pred --E---------------------------EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-
Confidence 0 01112333444489999999999655553 89999999998877664
Q ss_pred cCcccEEEEEEcCCCc-EEE-EeCCCe-EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEE-EcCCCcEEEEe
Q 044557 183 AHDDAINAVALSDDGD-VYT-GSADKK-IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYS-GACDRSIIVWE 258 (362)
Q Consensus 183 ~h~~~v~~v~~~~~~~-~~s-~~~dg~-i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~~d~~i~~wd 258 (362)
+.....+++|+|+|+ +++ ...++. |.+|++...................+..++|+|||++|+. +..++.|++||
T Consensus 126 -~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 204 (331)
T 3u4y_A 126 -IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE 204 (331)
T ss_dssp -CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 334568999999996 554 455578 9999987543221111111123445789999999996654 45689999999
Q ss_pred ccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCC----CCc---EEEEEeee
Q 044557 259 KEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGH----RGP---VKCLAAAI 328 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h----~~~---v~~~~~~~ 328 (362)
+.+.+. ...+..+.. ...+..++++++ ++++...++.|.+|+........+..+..+ ... ...++|+|
T Consensus 205 ~~~~~~-~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 282 (331)
T 3u4y_A 205 TQNPEN-ITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK 282 (331)
T ss_dssp CSSTTS-CEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT
T ss_pred CCCCcc-cceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC
Confidence 986543 111233333 345677888765 345556788999999754443334443322 222 23467776
Q ss_pred cCCccCCCCCceEEEecCCCCcEEEEecccCc
Q 044557 329 DNDRCDSSDTSYLVCSGSLDCDIKVWQISFPL 360 (362)
Q Consensus 329 ~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~~ 360 (362)
++. +++++++.++.|++||+..+.
T Consensus 283 dg~--------~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 283 TET--------KLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TSS--------EEEEEETTTTEEEEEETTSCE
T ss_pred CCC--------EEEEecCCCCcEEEEEecCCc
Confidence 543 455677778899999997664
No 133
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=6.2e-19 Score=157.68 Aligned_cols=276 Identities=15% Similarity=0.222 Sum_probs=174.4
Q ss_pred cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce-eEEEec---CCcEEEEecCCCCCCcccceeeeec
Q 044557 36 SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK-LFSAHQ---DHKIRVWKINNQEPDHQKYTRLATL 111 (362)
Q Consensus 36 s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~ 111 (362)
+.++.|.+|++........... ...+......+.+.++. |++++. ++.|.+|++..+.. ..+
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~------~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~-----~~~--- 78 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDG------LLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTA-----HKL--- 78 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEE------EEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEE-----EEE---
T ss_pred CCCCCEEEEEEcCCCCeEEEee------eeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcE-----EEe---
Confidence 4567888988765332221100 01122344556666553 777665 58999999854321 000
Q ss_pred cCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEEECCC---ceEEEeeecc----
Q 044557 112 PTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIWRTSD---FKCLESITNA---- 183 (362)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~---~~~~~~~~~~---- 183 (362)
.....+...+..++|+|++++|++++ .++.|++|++.. .+.+..+...
T Consensus 79 ------------------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p 134 (347)
T 3hfq_A 79 ------------------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGP 134 (347)
T ss_dssp ------------------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCS
T ss_pred ------------------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCC
Confidence 11123556778999999999988888 779999999862 2333333211
Q ss_pred ----CcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCcceeehhhhc-cccceeEEEEecCCCEEEE-EcCCCcEEE
Q 044557 184 ----HDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHSLVDVLER-HNSGINALALSCDGSVLYS-GACDRSIIV 256 (362)
Q Consensus 184 ----h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~~~~~l~s-~~~d~~i~~ 256 (362)
+...+.+++|+|+|+++ +...++.|.+|++...... ........ ....+..++|+|||++|++ +..++.|++
T Consensus 135 ~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 135 RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL-SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE-EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 12248889999999854 4456889999999832211 11111111 2235678999999996665 567889999
Q ss_pred EeccCCCCcEEEEEeecCcc------ceeEEEEEeCC--eE-EEeeCCCcEEEeeCCCC-ceeeeeEecCCCCcEEEEEe
Q 044557 257 WEKEEDDGNILVVGALRGHT------KSILCMAVVSD--LV-CSGSADKTIRIWRGIDR-NYTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 257 wd~~~~~~~~~~~~~~~~h~------~~v~~~~~~~~--~~-~s~s~D~~i~~W~~~~~-~~~~~~~l~~h~~~v~~~~~ 326 (362)
|++....+.......+.... ..+..++++++ ++ ++...++.|.+|+.... ....+..+..|...+..++|
T Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL 293 (347)
T ss_dssp EEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE
T ss_pred EEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE
Confidence 99875444433333333222 34778888865 44 67778999999996422 34566677777778899999
Q ss_pred eecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 327 AIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 327 ~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+|+++ ++++++..++.|.+|+++.
T Consensus 294 spdg~--------~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 294 DPTEA--------FVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp CTTSS--------EEEEEETTTTEEEEEEECT
T ss_pred CCCCC--------EEEEEEcCCCcEEEEEEeC
Confidence 87653 3444445568999997653
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=6.9e-20 Score=180.42 Aligned_cols=285 Identities=9% Similarity=0.092 Sum_probs=190.1
Q ss_pred ccceeeeEec--CcEEEEecC-CC-----eEEEeecCCCCcccceeeeccc---eeEE------------eecceeEEEE
Q 044557 19 NSYVSSLALA--GKFLYTGSS-DN-----EVRSWDCNTFSSELDQEFLSNN---NIVA------------VGKGAVKSLV 75 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~-Dg-----~i~vWd~~~~~~~~~~~~~~~~---~~~~------------~~~~~v~~i~ 75 (362)
...|.+++|+ |++|++++. |+ +|++||+.+............. ..+. .+...+..+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 4568888884 889999998 88 9999998764321110000000 0000 0002356677
Q ss_pred EcCc--eeEEEecCCcEEEEecCCC---CCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE
Q 044557 76 VLAD--KLFSAHQDHKIRVWKINNQ---EPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL 150 (362)
Q Consensus 76 ~~~~--~l~s~~~dg~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 150 (362)
+++| .|++++. +.|.+|++..+ ... . +..|...+.+++|
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-----~------------------------------l~~~~~~~~~~~~ 159 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-----Q------------------------------LTHGEGFATDAKL 159 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCC-----B------------------------------CCCSSSCEEEEEE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEE-----E------------------------------cccCCcccccccC
Confidence 7765 3666664 99999998764 210 0 0124456889999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeeeccCccc----------------EEEEEEcCCCc-EEEEeCCC-------
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDA----------------INAVALSDDGD-VYTGSADK------- 206 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~----------------v~~v~~~~~~~-~~s~~~dg------- 206 (362)
+|||++|+.++ ++.|++||+.+++...... .+... +..++|+|+|+ +++++.|+
T Consensus 160 SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 160 SPKGGFVSFIR-GRNLWVIDLASGRQMQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQK 237 (741)
T ss_dssp CTTSSEEEEEE-TTEEEEEETTTTEEEECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEE
T ss_pred CCCCCEEEEEe-CCcEEEEecCCCCEEEecc-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEe
Confidence 99999999887 5699999999887655332 23222 36799999997 77776655
Q ss_pred --------------------------eEEEEeCCC-CCCcceeehhhhccccceeEEEEecCCCEEEEEcC-----CCcE
Q 044557 207 --------------------------KIKVWRRSP-GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-----DRSI 254 (362)
Q Consensus 207 --------------------------~i~iw~~~~-~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-----d~~i 254 (362)
.|.+||+.+ +.... + .....|...+..++| |||++|+.++. +..|
T Consensus 238 ~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~-~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i 314 (741)
T 2ecf_A 238 RYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW-I-DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL 314 (741)
T ss_dssp EEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE-E-CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred cCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE-e-cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence 788899877 64321 1 111246778999999 99999997754 5679
Q ss_pred EEEeccCCCCcEEEEEeecCccc----eeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEE-Eee
Q 044557 255 IVWEKEEDDGNILVVGALRGHTK----SILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCL-AAA 327 (362)
Q Consensus 255 ~~wd~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~-~~~ 327 (362)
++||+.++.... + +..+.. .+..++|+++ ++++++.|+.++||..... .. ...+.+|...|..+ +|+
T Consensus 315 ~~~d~~~g~~~~-~---~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-~~-~~~l~~~~~~v~~~~~~s 388 (741)
T 2ecf_A 315 VEVTLASNQQRV-L---AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-GK-AAALTHGNWSVDELLAVD 388 (741)
T ss_dssp EEEETTTCCEEE-E---EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-SC-EEESCCSSSCEEEEEEEE
T ss_pred EEEECCCCceEE-E---EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-CC-eeeeeecceEEEeEeEEe
Confidence 999998654221 1 222222 3456777654 7889999999999975422 23 66788888888887 588
Q ss_pred ecCCccCCCCCceEEEecCCCC--cEEEEeccc
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDC--DIKVWQISF 358 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~--~i~~W~~~~ 358 (362)
|+++ .++++++.|+ +++||++..
T Consensus 389 ~dg~--------~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 389 EKAG--------LAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp TTTT--------EEEEEECSSCTTCBEEEEEET
T ss_pred CCCC--------EEEEEEeCCCCceEEEEEEEc
Confidence 7653 4566777777 899999853
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=2.9e-18 Score=152.45 Aligned_cols=276 Identities=12% Similarity=0.168 Sum_probs=172.4
Q ss_pred cCccceeeeEec--CcEEEEecCC-CeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEec-CCcE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSD-NEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQ-DHKI 90 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~D-g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~-dg~i 90 (362)
.|...+.+++++ +++|++++.+ +.|++|++.......... ..+.. ...+..+.+.++ .+++++. ++.|
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~i 108 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-----AESAL-PGSLTHISTDHQGQFVFVGSYNAGNV 108 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-----EEEEC-SSCCSEEEECTTSSEEEEEETTTTEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec-----ccccc-CCCCcEEEEcCCCCEEEEEecCCCeE
Confidence 467788889884 7778888776 999999986321111100 00111 124566667654 4666654 8899
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIW 169 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iw 169 (362)
.+|++..+. . ...... ......+.+++|+|+++++++++ .|+.|++|
T Consensus 109 ~~~d~~~~~-~---~~~~~~----------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 109 SVTRLEDGL-P---VGVVDV----------------------------VEGLDGCHSANISPDNRTLWVPALKQDRICLF 156 (343)
T ss_dssp EEEEEETTE-E---EEEEEE----------------------------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred EEEECCCCc-c---cccccc----------------------------ccCCCCceEEEECCCCCEEEEecCCCCEEEEE
Confidence 999985211 0 000000 11223477889999999888877 89999999
Q ss_pred ECCC-ceEEE----eeeccCcccEEEEEEcCCCc-EEE-EeCCCeEEEEeCCCCCCccee---ehhhh-cc--ccceeEE
Q 044557 170 RTSD-FKCLE----SITNAHDDAINAVALSDDGD-VYT-GSADKKIKVWRRSPGNKKHSL---VDVLE-RH--NSGINAL 236 (362)
Q Consensus 170 d~~~-~~~~~----~~~~~h~~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~~~~~~~~~~---~~~~~-~h--~~~v~~i 236 (362)
|+.+ ++... .+.......+..++|+|++. ++. +..++.|.+|++......... ...+. .+ ...+..+
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 9987 54322 22223345788999999997 544 458899999999642211111 11111 11 2356689
Q ss_pred EEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee-CCCcEEEeeCC--CCceee
Q 044557 237 ALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS-ADKTIRIWRGI--DRNYTC 310 (362)
Q Consensus 237 ~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s-~D~~i~~W~~~--~~~~~~ 310 (362)
+|+|+|++|+ ++..|+.|++|++.........+..+..+.. +..++++++ ++++++ .|+.|++|+.. ....+.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE 315 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeE
Confidence 9999999887 5557999999999743333444555554444 778888754 555555 78999999643 233445
Q ss_pred eeEecCCCCcEEEEEeeecCCc
Q 044557 311 LAVLEGHRGPVKCLAAAIDNDR 332 (362)
Q Consensus 311 ~~~l~~h~~~v~~~~~~~~~~~ 332 (362)
+..+... ....+++|.++.++
T Consensus 316 ~~~~~~g-~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 316 KGRYAVG-QGPMWVVVNAHEGG 336 (343)
T ss_dssp EEEEECS-SSCCEEEEEEEC--
T ss_pred ccccccC-CCCeeEEEEcccCC
Confidence 5555542 44667788877543
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.3e-19 Score=157.48 Aligned_cols=244 Identities=14% Similarity=0.089 Sum_probs=165.7
Q ss_pred EecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecCC-CCCCcccceeeee
Q 044557 34 TGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKINN-QEPDHQKYTRLAT 110 (362)
Q Consensus 34 t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~~-~~~~~~~~~~~~~ 110 (362)
+++.|++|++||+.+.... .+..+...+.++.+.++ .+++++ ++.|.+|++.. +... .
T Consensus 17 ~~~~~~~i~~~d~~~~~~~----------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-----~--- 77 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR----------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-----K--- 77 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE----------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----E---
T ss_pred CCCcceeEEEEeCCCCcee----------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----E---
Confidence 4678999999998653211 11224567888888765 355554 88999999876 4321 0
Q ss_pred ccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE--CCCcEEEEE--CCCceEEEeeeccCcc
Q 044557 111 LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS--WDRTIKIWR--TSDFKCLESITNAHDD 186 (362)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~d~~i~iwd--~~~~~~~~~~~~~h~~ 186 (362)
+.. ..+...+.+++|+|++++|++++ .++..+||. ..+++. ..+. +..
T Consensus 78 ~~~-------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~--~~~ 129 (297)
T 2ojh_A 78 VDT-------------------------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT--KNL 129 (297)
T ss_dssp CCC-------------------------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC--SSS
T ss_pred ecc-------------------------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee--cCC
Confidence 000 01234577899999999999999 445555555 444442 3332 233
Q ss_pred cEEEEEEcCCCc-EE-EEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccCCC
Q 044557 187 AINAVALSDDGD-VY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEEDD 263 (362)
Q Consensus 187 ~v~~v~~~~~~~-~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~~~ 263 (362)
.+..++|+|+++ ++ ++..|+.+++|++...... ...+..+...+.+++|+|+|++|+.++ .|+.+++|++....
T Consensus 130 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 130 PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG 206 (297)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC
Confidence 588899999997 54 7788999999986432211 122345677899999999999888666 59999999986433
Q ss_pred CcEEEEEeecCccceeEEEEEeCC--eEEEeeCC-----------CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 264 GNILVVGALRGHTKSILCMAVVSD--LVCSGSAD-----------KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D-----------~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
.. ...+..|...+.++.|+++ +++.++.| +.|.+|+........+..+.+|...+..++|+|++
T Consensus 207 ~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 283 (297)
T 2ojh_A 207 SS---VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG 283 (297)
T ss_dssp SC---EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS
T ss_pred CC---cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCC
Confidence 33 2345667778888999765 67777765 56999997655555566666888889988887664
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=2e-19 Score=176.13 Aligned_cols=291 Identities=9% Similarity=0.070 Sum_probs=180.0
Q ss_pred eeeecccCccceeeeEecCcEEEEecCCCeEEEeecCCCCc--ccceeeeccc---------eeEEeecceeEEEEEcCc
Q 044557 11 CLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSWDCNTFSS--ELDQEFLSNN---------NIVAVGKGAVKSLVVLAD 79 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~--~~~~~~~~~~---------~~~~~~~~~v~~i~~~~~ 79 (362)
.-.+|..+ .+..+.|.++.+++++.|+ | +||+.+... ... +.... .........+.++.++++
T Consensus 19 ~~~~~~~~--~~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l--~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd 92 (706)
T 2z3z_A 19 EFYNFYPE--YVVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTR--FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR 92 (706)
T ss_dssp -----------CTTCEEETTEEEEEETTE-E-EEEC-------CEE--EEHHHHHTTC-----------CCCEEEEETTT
T ss_pred cccccccc--cCCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEe--echhHhhhhccchhccccccccCceeEEECCC
Confidence 33344444 3455666677788888888 8 999876543 111 11000 000001135778888877
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYS 159 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 159 (362)
..+..+.+++|++||+..+... ....+...+.+++|+|||+.|+.
T Consensus 93 ~~~~~~~~~~i~~~d~~~~~~~-----------------------------------~l~~~~~~~~~~~~SpdG~~la~ 137 (706)
T 2z3z_A 93 GLVVLFTQGGLVGFDMLARKVT-----------------------------------YLFDTNEETASLDFSPVGDRVAY 137 (706)
T ss_dssp TEEEEEETTEEEEEETTTTEEE-----------------------------------EEECCTTCCTTCEECTTSSEEEE
T ss_pred CeEEEEECCEEEEEECCCCceE-----------------------------------EccCCcccccCCcCCCCCCEEEE
Confidence 6444456799999998653210 01123445677899999999998
Q ss_pred EECCCcEEEEECCC-----ceEEEeeeccCccc--------------EEEEEEcCCCc-EEEEe----------------
Q 044557 160 VSWDRTIKIWRTSD-----FKCLESITNAHDDA--------------INAVALSDDGD-VYTGS---------------- 203 (362)
Q Consensus 160 ~s~d~~i~iwd~~~-----~~~~~~~~~~h~~~--------------v~~v~~~~~~~-~~s~~---------------- 203 (362)
+ .|+.|++|++.+ ++...... .+... +.+++|+|+|+ +++++
T Consensus 138 ~-~~~~i~v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~ 215 (706)
T 2z3z_A 138 V-RNHNLYIARGGKLGEGMSRAIAVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHP 215 (706)
T ss_dssp E-ETTEEEEEECBCTTSCCCCCEESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCS
T ss_pred E-ECCeEEEEecCcccccCCCcEEecc-CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCC
Confidence 5 689999999988 76554332 22222 47899999997 66665
Q ss_pred -----------------CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC-----cEEEEeccC
Q 044557 204 -----------------ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR-----SIIVWEKEE 261 (362)
Q Consensus 204 -----------------~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-----~i~~wd~~~ 261 (362)
.+..|.+||+.++... .......|...+..++|+|||++|++++.|+ .|++||..+
T Consensus 216 ~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~ 293 (706)
T 2z3z_A 216 LEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV--YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET 293 (706)
T ss_dssp SSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE--ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred CCCceEEeeCCCCCCCCCeeEEEEEECCCCceE--eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence 4468999999876421 1111224667899999999999999988776 899999876
Q ss_pred CCCcEEEEEeecCcc---ceeEEEEEeC--C--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEE-EEeeecCCcc
Q 044557 262 DDGNILVVGALRGHT---KSILCMAVVS--D--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKC-LAAAIDNDRC 333 (362)
Q Consensus 262 ~~~~~~~~~~~~~h~---~~v~~~~~~~--~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~-~~~~~~~~~~ 333 (362)
+.. ...+.. ..+. ..+.++.|++ + ++++++.|+.++||.... ....+..+.+|...+.. ++|+|+++
T Consensus 294 g~~-~~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~-~~~~~~~l~~~~~~v~~~~~~spdg~-- 368 (706)
T 2z3z_A 294 GRF-VRTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT-TGRLIRQVTKGEWEVTNFAGFDPKGT-- 368 (706)
T ss_dssp CCE-EEEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET-TSCEEEECCCSSSCEEEEEEECTTSS--
T ss_pred Cce-eeEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC-CCCEEEecCCCCeEEEeeeEEcCCCC--
Confidence 522 212111 1112 1235567766 4 788999999999998542 23456778888888877 78876643
Q ss_pred CCCCCceEEEecCCCC----cEEEEecc
Q 044557 334 DSSDTSYLVCSGSLDC----DIKVWQIS 357 (362)
Q Consensus 334 ~~~~~~~~l~s~s~D~----~i~~W~~~ 357 (362)
.++++++.++ .|..||+.
T Consensus 369 ------~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 369 ------RLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp ------EEEEEESSSCTTCBEEEEEETT
T ss_pred ------EEEEEecCCCCceEEEEEEEcC
Confidence 4566666666 45555553
No 138
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1e-19 Score=167.80 Aligned_cols=199 Identities=14% Similarity=0.082 Sum_probs=142.8
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCc-----------eEEE---eeeccCcccEEEEEEcCCCc-EE----EEeC
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDF-----------KCLE---SITNAHDDAINAVALSDDGD-VY----TGSA 204 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-----------~~~~---~~~~~h~~~v~~v~~~~~~~-~~----s~~~ 204 (362)
.+..+++++++.++++++.|+ +++|+.... .... .....+...|.+++|+|++. ++ +++.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 457889999999999999888 999875321 1100 01123566799999999997 66 6788
Q ss_pred CCeEEEEeCCCC-----CC--cceeehhhhccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc
Q 044557 205 DKKIKVWRRSPG-----NK--KHSLVDVLERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT 276 (362)
Q Consensus 205 dg~i~iw~~~~~-----~~--~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~ 276 (362)
|+.|++||+.+. .. .......+.+|...|.+++|+|+ +.+|++++.||+|++||+++.. ......+|.
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~----~~~~~~~~~ 192 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV----KVCATLPST 192 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE----EEEEEECGG
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc----ceeeccCCC
Confidence 999999998653 11 01123445678999999999998 8899999999999999998642 223345688
Q ss_pred ceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCC-------CCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 277 KSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGH-------RGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 277 ~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h-------~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
..|.+++|+++ ++++|+.|++|++|+.. ......+..| ...|.+++|+++.. .+++.++.
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~--------~l~~~~~~ 261 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT---LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV--------FAIVYAAA 261 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT---CCEEEEECCCTTCCTTSCEEEEEEEEEETTE--------EEEEEEET
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC---CcccccccCCcccCCCCceeEEEEEEecCce--------EEEEEccC
Confidence 99999999864 89999999999999964 2223334333 34889999876431 23333444
Q ss_pred CCc------EEEEeccc
Q 044557 348 DCD------IKVWQISF 358 (362)
Q Consensus 348 D~~------i~~W~~~~ 358 (362)
||. +++|++..
T Consensus 262 dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 262 DGTLETSPDVVMALLPK 278 (434)
T ss_dssp TCCSSSCCEEEEEECCC
T ss_pred CCccCCCCceEEEEecc
Confidence 533 89999863
No 139
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=2e-19 Score=165.91 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=118.3
Q ss_pred eecCceeEEEEecCCCEEE----EEECCCcEEEEECCCc--------eEE--EeeeccCcccEEEEEEcCC-Cc-EEEEe
Q 044557 140 HHVDAVSALALTKDETLLY----SVSWDRTIKIWRTSDF--------KCL--ESITNAHDDAINAVALSDD-GD-VYTGS 203 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~----s~s~d~~i~iwd~~~~--------~~~--~~~~~~h~~~v~~v~~~~~-~~-~~s~~ 203 (362)
.+...|.+++|+|++++|+ +|+.|+.|+|||+++. +.+ .....+|...|.+++|+|+ +. +++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4567899999999999999 7889999999998654 211 1223468999999999997 55 88899
Q ss_pred CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEee----cCcccee
Q 044557 204 ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGAL----RGHTKSI 279 (362)
Q Consensus 204 ~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~----~~h~~~v 279 (362)
.||+|++||+.++.. ......|...|.+++|+|+|++|++|+.||+|++||.+ ... ...+... ..|...|
T Consensus 170 ~Dg~v~iwD~~~~~~----~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-~~~~~~~~~~~~~~~~~v 243 (434)
T 2oit_A 170 ADGSIAVLQVTETVK----VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-KKVIPCPPFYESDHPVRV 243 (434)
T ss_dssp TTSCEEEEEESSSEE----EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-EEEECCCTTCCTTSCEEE
T ss_pred CCCeEEEEEcCCCcc----eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-cccccCCcccCCCCceeE
Confidence 999999999987632 22234578899999999999999999999999999987 221 1111111 1234478
Q ss_pred EEEEEeCC--eE-EEeeCCCc------EEEeeCCC
Q 044557 280 LCMAVVSD--LV-CSGSADKT------IRIWRGID 305 (362)
Q Consensus 280 ~~~~~~~~--~~-~s~s~D~~------i~~W~~~~ 305 (362)
.++.|.++ ++ +.++.||. +++|++..
T Consensus 244 ~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 99999765 33 23444433 88998643
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=4.6e-19 Score=153.90 Aligned_cols=199 Identities=15% Similarity=0.055 Sum_probs=142.1
Q ss_pred eecCceeEEEEecCCCEEEEEECCCcEEEEECCC-ceEEEeeeccCcccEEEEEEcCCCc-EEEEe--CCCeEEEEeC--
Q 044557 140 HHVDAVSALALTKDETLLYSVSWDRTIKIWRTSD-FKCLESITNAHDDAINAVALSDDGD-VYTGS--ADKKIKVWRR-- 213 (362)
Q Consensus 140 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~--~dg~i~iw~~-- 213 (362)
.|...+.+++|+|++++|++++ ++.|++||+.+ ++........+...+.+++|+|+++ +++++ .++.++||.+
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 4678899999999999999987 88999999998 7665544333346788999999997 66666 3345555554
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEE
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVC 290 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~ 290 (362)
.++. ... +. +...+..++|+||+++|+ +++.|+.+++|++....... ..+..|...+.++.|+++ .++
T Consensus 118 ~~~~--~~~---~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 118 TGGT--PRL---MT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE---TRLTHGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp TCCC--CEE---CC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE---EECCCSSSCEEEEEECTTSSEEE
T ss_pred CCCc--eEE---ee-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc---eEcccCCCccccceECCCCCEEE
Confidence 4332 111 11 223488899999999887 78889999999975433332 235567778899999765 555
Q ss_pred Ee-eCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCC-----------CcEEEEeccc
Q 044557 291 SG-SADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD-----------CDIKVWQISF 358 (362)
Q Consensus 291 s~-s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D-----------~~i~~W~~~~ 358 (362)
.+ ..|+.+++|+.... ...+..+..|...+..++|+|++. +|+.++.| +.|.+||+..
T Consensus 189 ~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVD-GSSVERITDSAYGDWFPHPSPSGD---------KVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEECTTSSCEEEEEETT-SSCEEECCCCSEEEEEEEECTTSS---------EEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEecCCCCccEEEECCC-CCCcEEEecCCcccCCeEECCCCC---------EEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 44 46999999986322 234567788888999999987643 46666555 5699999854
No 141
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=8.9e-17 Score=144.47 Aligned_cols=284 Identities=14% Similarity=0.148 Sum_probs=169.4
Q ss_pred CccceeeeEec--CcEEEEecCC----CeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe-cCCcE
Q 044557 18 HNSYVSSLALA--GKFLYTGSSD----NEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH-QDHKI 90 (362)
Q Consensus 18 H~~~V~~l~~~--~~~l~t~s~D----g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~-~dg~i 90 (362)
|......++++ +++|++++.+ +.|++|++........... ....+......+.+.++.|++++ .++.|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~-----~~~~~~~~p~~~~~dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN-----TQKTMGADPCYLTTNGKNIVTANYSGGSI 122 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE-----EEECSSSCEEEEEECSSEEEEEETTTTEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee-----EeccCCCCcEEEEECCCEEEEEECCCCEE
Confidence 56677777774 7888888876 8999999865322111100 00111223344555555677766 57899
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIW 169 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iw 169 (362)
.+|++.......... ........... + ...+...+.+++|+|++++|++++ .++.|++|
T Consensus 123 ~~~~~~~~g~~~~~~-~~~~~~g~~~~------~-------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~ 182 (361)
T 3scy_A 123 TVFPIGQDGALLPAS-DVIEFKGSGPD------K-------------ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF 182 (361)
T ss_dssp EEEEBCTTSCBCSCS-EEEECCCCCSC------T-------------TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCcCcccc-eeEEccCCCCC------c-------------cccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence 999986432111100 00000000000 0 001223467899999999766655 58899999
Q ss_pred ECCCceE------E------EeeeccCcccEEEEEEcCCCc-EEEEe-CCCeEEEEeCCCCCCcc-eeehhhhcccccee
Q 044557 170 RTSDFKC------L------ESITNAHDDAINAVALSDDGD-VYTGS-ADKKIKVWRRSPGNKKH-SLVDVLERHNSGIN 234 (362)
Q Consensus 170 d~~~~~~------~------~~~~~~h~~~v~~v~~~~~~~-~~s~~-~dg~i~iw~~~~~~~~~-~~~~~~~~h~~~v~ 234 (362)
++..... + ......+...+..++|+|+|+ +++++ .++.|.+|++.++.... ........+.....
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~ 262 (361)
T 3scy_A 183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSG 262 (361)
T ss_dssp EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEE
T ss_pred EEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcc
Confidence 8764321 1 122233455678999999997 55555 68999999987543211 01112223344567
Q ss_pred EEEEecCCCEEEEEcCC--CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEee-CCCcEEEeeCCCCcee
Q 044557 235 ALALSCDGSVLYSGACD--RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGS-ADKTIRIWRGIDRNYT 309 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s-~D~~i~~W~~~~~~~~ 309 (362)
.++|+|||++|+++..+ +.|.+|++....+....+..+.. ...+.+++|+++ ++++++ .++.|.+|+.....++
T Consensus 263 ~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 263 DIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp EEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred cEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 99999999999776654 89999998643444444444444 456778888865 566655 7799999865433333
Q ss_pred eeeEe-cCCCCcEEEEEee
Q 044557 310 CLAVL-EGHRGPVKCLAAA 327 (362)
Q Consensus 310 ~~~~l-~~h~~~v~~~~~~ 327 (362)
..... ..+...+.|++|.
T Consensus 342 ~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 342 LTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEECSCCEECSSEEEEEEE
T ss_pred EeecceeeeCCCCeEEEEc
Confidence 33222 2245568888774
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=6e-18 Score=165.70 Aligned_cols=290 Identities=9% Similarity=0.036 Sum_probs=180.0
Q ss_pred cceeeeEecC-cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecC
Q 044557 20 SYVSSLALAG-KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 20 ~~V~~l~~~~-~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~ 96 (362)
..|.+++|+. ++++.+ .|++|++||+.+... . . +..+...+..+.++++ .|+. +.|+.|++|++.
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~--~-~-------l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKV--T-Y-------LFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEE--E-E-------EECCTTCCTTCEECTTSSEEEE-EETTEEEEEECB
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCce--E-E-------ccCCcccccCCcCCCCCCEEEE-EECCeEEEEecC
Confidence 5689999963 444433 469999999865321 1 1 1112334556667665 4555 578999999997
Q ss_pred C-----CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE----------
Q 044557 97 N-----QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS---------- 161 (362)
Q Consensus 97 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---------- 161 (362)
. +... .+. ..... .+..... ....+...+.+++|+|||++|++++
T Consensus 150 ~~~~~~g~~~-----~~~---~~~~~-----------~~~~g~~-~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~ 209 (706)
T 2z3z_A 150 KLGEGMSRAI-----AVT---IDGTE-----------TLVYGQA-VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTP 209 (706)
T ss_dssp CTTSCCCCCE-----ESC---SCCBT-----------TEEESSC-CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEE
T ss_pred cccccCCCcE-----Eec---cCCCC-----------CeEcccc-hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEE
Confidence 6 4321 000 00000 0000000 0001234467899999999999988
Q ss_pred -----------------------CCCcEEEEECCCceEEEeee-ccCcccEEEEEEcCCCc-EEEEeCCC-----eEEEE
Q 044557 162 -----------------------WDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSDDGD-VYTGSADK-----KIKVW 211 (362)
Q Consensus 162 -----------------------~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~v~~~~~~~-~~s~~~dg-----~i~iw 211 (362)
.+..|++||+.+++...... ..|...+.+++|+|+|+ +++++.|+ .|.+|
T Consensus 210 ~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~ 289 (706)
T 2z3z_A 210 IVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAY 289 (706)
T ss_dssp EEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred eeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence 45789999999887654332 24667899999999998 77766665 89999
Q ss_pred eCCCCCCcceeehhhhccc---cceeEEEEec--CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEE-EEEe
Q 044557 212 RRSPGNKKHSLVDVLERHN---SGINALALSC--DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILC-MAVV 285 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~---~~v~~i~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~-~~~~ 285 (362)
|+.++.....+.. ..+. ..+..++|+| ||++|++++.|+.+++|....... ....+..|...+.. ++|+
T Consensus 290 d~~~g~~~~~~~~--~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---~~~~l~~~~~~v~~~~~~s 364 (706)
T 2z3z_A 290 DAETGRFVRTLFV--ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---LIRQVTKGEWEVTNFAGFD 364 (706)
T ss_dssp ETTTCCEEEEEEE--EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---EEEECCCSSSCEEEEEEEC
T ss_pred ECCCCceeeEEEE--ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC---EEEecCCCCeEEEeeeEEc
Confidence 9987632222211 1122 2346789999 999999999999999998763222 23345666666765 6787
Q ss_pred CC--eE-EEeeCCC----cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCC---CcEEEEe
Q 044557 286 SD--LV-CSGSADK----TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD---CDIKVWQ 355 (362)
Q Consensus 286 ~~--~~-~s~s~D~----~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D---~~i~~W~ 355 (362)
++ .+ ++++.++ .|..|+..... ...+. |...+..++|+|+++ .++++++.+ +.|++||
T Consensus 365 pdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l~-~~~~~~~~~~spdg~--------~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 365 PKGTRLYFESTEASPLERHFYCIDIKGGK---TKDLT-PESGMHRTQLSPDGS--------AIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp TTSSEEEEEESSSCTTCBEEEEEETTCCC---CEESC-CSSSEEEEEECTTSS--------EEEEEEECSSCSCEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEEEEcCCCC---ceecc-CCCceEEEEECCCCC--------EEEEEecCCCCCcEEEEEE
Confidence 54 44 4555555 45555543222 33333 777899999987653 344444443 5699999
Q ss_pred ccc
Q 044557 356 ISF 358 (362)
Q Consensus 356 ~~~ 358 (362)
+..
T Consensus 433 ~~~ 435 (706)
T 2z3z_A 433 IGK 435 (706)
T ss_dssp SSS
T ss_pred CCC
Confidence 853
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=1e-17 Score=148.55 Aligned_cols=265 Identities=9% Similarity=0.106 Sum_probs=171.5
Q ss_pred cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc--eeEEEEEcCc--eeE-EEecCCcEEEEecCCCCCCccc
Q 044557 30 KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG--AVKSLVVLAD--KLF-SAHQDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 30 ~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~--~l~-s~~~dg~i~~w~~~~~~~~~~~ 104 (362)
+++++++.+++|++||..+... ...+. .+.. .+..+.+.++ .++ ++..++.|.+||+..++..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~--~~~~~-------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--- 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV--DKVIT-------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL--- 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE--EEEEE-------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---
T ss_pred cEEEEcCCCCeEEEEECCCCcE--EEEEE-------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---
Confidence 5799999999999999875321 11111 1111 3456667654 454 4556789999998754311
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE------------CCCcEEEEECC
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS------------WDRTIKIWRTS 172 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------------~d~~i~iwd~~ 172 (362)
..++.... ..|...+.+++|+|++++|++++ .++.|.+||+.
T Consensus 70 ----~~~~~~~~----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~ 123 (337)
T 1pby_B 70 ----GRIDLSTP----------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123 (337)
T ss_dssp ----EEEECCBT----------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred ----eeEEcCCc----------------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC
Confidence 00000000 00223466789999999998886 67999999999
Q ss_pred CceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC
Q 044557 173 DFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD 251 (362)
Q Consensus 173 ~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d 251 (362)
+++.+..+.. ...+.+++|+|+++ ++++ ++.|.+||+.++.....+. ...+..+ +.|+|+|..|+..+.+
T Consensus 124 ~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~--~~~~~~~---~~~s~dg~~l~~~~~~ 194 (337)
T 1pby_B 124 TLSRRKAFEA--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP--IQSWEAE---TYAQPDVLAVWNQHES 194 (337)
T ss_dssp TTEEEEEEEC--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC--STTTTTT---TBCCCBCCCCCCCCTT
T ss_pred CCcEEEEEeC--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee--ccccCCC---ceeCCCccEEeeeccC
Confidence 9887776643 34577889999997 6666 6899999998764322211 1111122 3678999877655543
Q ss_pred C------------------------cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCC
Q 044557 252 R------------------------SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGID 305 (362)
Q Consensus 252 ~------------------------~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~ 305 (362)
+ .|.+||..+.+. . ...+..+...+.+++++++ +++++ |+.|++|+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~ 269 (337)
T 1pby_B 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM--A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE--E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred CCceeeeeeccccccccccccccccceEEEeCCCCCc--e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence 3 367899876442 2 2234445566778888865 66666 79999999643
Q ss_pred CceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 306 RNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 306 ~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+.+..+..+ ..+.+++|+|+++ +|++++.|+.|++||+..
T Consensus 270 --~~~~~~~~~~-~~~~~~~~s~dg~---------~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 270 --NASIKRVPLP-HSYYSVNVSTDGS---------TVWLGGALGDLAAYDAET 310 (337)
T ss_dssp --TEEEEEEECS-SCCCEEEECTTSC---------EEEEESBSSEEEEEETTT
T ss_pred --CcCcceecCC-CceeeEEECCCCC---------EEEEEcCCCcEEEEECcC
Confidence 3445555433 4578888876643 466678899999999853
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.81 E-value=1.1e-17 Score=170.86 Aligned_cols=287 Identities=11% Similarity=0.059 Sum_probs=199.7
Q ss_pred eeeecccCccceeeeEecCc-EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEEecC
Q 044557 11 CLTTLKGHNSYVSSLALAGK-FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSAHQD 87 (362)
Q Consensus 11 ~~~tl~gH~~~V~~l~~~~~-~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~~~d 87 (362)
....+.+|.+.+.++.|+++ ++++++.|+++++|.+....... ..+.. +. .+....+++ ..++.+ .+
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~-~~l~~-------~~-~~~~~~~SpDG~~la~~-~~ 264 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-RKHTS-------FT-DYYPRHLNTDGRRILFS-KG 264 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-EECCC-------CC-SSCEEEEEESSSCEEEE-ET
T ss_pred CeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcc-eEecC-------CC-CcceeeEcCCCCEEEEE-eC
Confidence 34556899999999999765 56778889999999865322111 11110 11 122334443 345555 58
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe-cCCCEEEEEECCCcE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT-KDETLLYSVSWDRTI 166 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~d~~i 166 (362)
+.|.+|++.... +..+..... ........|...+.+++|+ |||+.|+.++ ++.|
T Consensus 265 ~~i~~~d~~~~~--------l~~l~~~~~----------------~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i 319 (1045)
T 1k32_A 265 GSIYIFNPDTEK--------IEKIEIGDL----------------ESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQA 319 (1045)
T ss_dssp TEEEEECTTTCC--------EEECCCCCC----------------CBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEE
T ss_pred CEEEEecCCceE--------eeeeccCcc----------------cccccccccccccceeeecCCCCCEEEEEE-cCEE
Confidence 999999983211 111111000 0001123466788999999 9999999888 8899
Q ss_pred EEEECCCceEEEeeeccCcc-cEEEEEEcCCCc-EEEEeCCCeEE-EEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 167 KIWRTSDFKCLESITNAHDD-AINAVALSDDGD-VYTGSADKKIK-VWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 167 ~iwd~~~~~~~~~~~~~h~~-~v~~v~~~~~~~-~~s~~~dg~i~-iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
.+|++..++... +. .|.. .+..++|+ +|+ ++.++.++.+. +|++..+... .+..|...+..++|+|||+
T Consensus 320 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-----~l~~~~~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 320 FIQDVSGTYVLK-VP-EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-----KFEENLGNVFAMGVDRNGK 391 (1045)
T ss_dssp EEECTTSSBEEE-CS-CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-----ECCCCCCSEEEEEECTTSS
T ss_pred EEEcCCCCceEE-cc-CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-----EecCCccceeeeEECCCCC
Confidence 999998876544 33 4666 88999999 886 77777788888 8998765321 1225778899999999999
Q ss_pred EEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCC----------cEEEeeCCCCceeee
Q 044557 244 VLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADK----------TIRIWRGIDRNYTCL 311 (362)
Q Consensus 244 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~----------~i~~W~~~~~~~~~~ 311 (362)
+|++++.++.|++||+.+++. .....+|...+.+++|+++ ++++++.++ .|++|+... .. +
T Consensus 392 ~la~~~~~~~v~~~d~~tg~~----~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~--g~-~ 464 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGKP----TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--RK-I 464 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCCE----EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--TE-E
T ss_pred EEEEECCCCeEEEEECCCCce----EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC--Cc-E
Confidence 999999999999999986432 2223468888889999875 677776654 899999643 23 5
Q ss_pred eEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 312 AVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 312 ~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
..+.+|...+..++|+|++. .|+.++.++..++|+.
T Consensus 465 ~~l~~~~~~~~~~~~spdG~---------~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 465 FAATTENSHDYAPAFDADSK---------NLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp EECSCSSSBEEEEEECTTSC---------EEEEEESCCCCCEECS
T ss_pred EEeeCCCcccCCceEcCCCC---------EEEEEecccCCcCcch
Confidence 67888999999999987653 5777888888888875
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=3.1e-18 Score=164.07 Aligned_cols=270 Identities=11% Similarity=0.054 Sum_probs=175.8
Q ss_pred eeeecccC-ccceeeeEe--cCcEEEEecC-CCeEEEeecCCCCcccceeeeccceeEEeec-ceeEEEEEcCce-eEEE
Q 044557 11 CLTTLKGH-NSYVSSLAL--AGKFLYTGSS-DNEVRSWDCNTFSSELDQEFLSNNNIVAVGK-GAVKSLVVLADK-LFSA 84 (362)
Q Consensus 11 ~~~tl~gH-~~~V~~l~~--~~~~l~t~s~-Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~-l~s~ 84 (362)
+++.++.+ ..+|.++.+ +|++||+++. ||+++||++.+... .. +..+. ..+..+.+++++ ++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~-------lt~~~~~~~~~~~~spd~~l~~~ 81 (582)
T 3o4h_A 12 IVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VK-------LNREPINSVLDPHYGVGRVILVR 81 (582)
T ss_dssp HHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EE-------CCSSCCSEECEECTTCSEEEEEE
T ss_pred HHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---Ee-------eecccccccccccCCCCeEEEEe
Confidence 44455543 567999887 5899999887 99999999743221 01 01122 356667777776 4455
Q ss_pred ec---CCcEEEEecCC--CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC--EE
Q 044557 85 HQ---DHKIRVWKINN--QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET--LL 157 (362)
Q Consensus 85 ~~---dg~i~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l 157 (362)
+. +...++|.++. ..... .+ .....+...+|+|+++ .+
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~-------~l----------------------------~~~~~~~~~~~s~dg~~~~~ 126 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQ-------RL----------------------------EAVKPMRILSGVDTGEAVVF 126 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCE-------EC----------------------------TTSCSBEEEEEEECSSCEEE
T ss_pred ccCCCCcceEEEEEeccCCCccc-------cc----------------------------cCCCCceeeeeCCCCCeEEE
Confidence 43 45567776543 11100 00 0011223457777775 44
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC----CeEEEEeCCCCCCcceeehhhhccccc
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD----KKIKVWRRSPGNKKHSLVDVLERHNSG 232 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~h~~~ 232 (362)
++++ ++.+.+||+.+++...... .+ . .+++|+|+|+ +++++.| +.|.+||+.++... .+..|...
T Consensus 127 ~s~~-~~~~~l~d~~~g~~~~l~~-~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~~~~~ 196 (582)
T 3o4h_A 127 TGAT-EDRVALYALDGGGLRELAR-LP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDSGEGS 196 (582)
T ss_dssp EEEC-SSCEEEEEEETTEEEEEEE-ES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-----EECCSSCE
T ss_pred EecC-CCCceEEEccCCcEEEeec-CC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-----EeecCCCc
Confidence 4444 4555599998887654332 22 2 7889999998 5656666 78999998876532 23457788
Q ss_pred eeEEEEecCCCEEEEEcCCC--cEEEEeccCCCCcEEEEEeecCccceeEEEE--------EeCC--eEEEeeCCCcEEE
Q 044557 233 INALALSCDGSVLYSGACDR--SIIVWEKEEDDGNILVVGALRGHTKSILCMA--------VVSD--LVCSGSADKTIRI 300 (362)
Q Consensus 233 v~~i~~s~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~--------~~~~--~~~s~s~D~~i~~ 300 (362)
+..++|+|||+.|+++..++ .|++||+.+++. . .+.+|...+..+. |+++ ++++++.|+.+++
T Consensus 197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l 271 (582)
T 3o4h_A 197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSV--E---DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAV 271 (582)
T ss_dssp EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE--E---ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred cccceECCCCCEEEEccCCCeeEEEEEcCCCCcE--E---EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEE
Confidence 89999999999999888898 899999876432 2 3556665555555 7765 7899999999999
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc---EEEEecc
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD---IKVWQIS 357 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~---i~~W~~~ 357 (362)
|+. +++.. .+...|.+++|+ ++ .++++++.+.+ +.+|+..
T Consensus 272 ~~~----g~~~~---~~~~~v~~~~~s-dg---------~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 272 FID----GERVE---APQGNHGRVVLW-RG---------KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EET----TEEEC---CCSSEEEEEEEE-TT---------EEEEEEEETTEEEEEEEETTC
T ss_pred EEE----CCeec---cCCCceEEEEec-CC---------EEEEEEcCCCCCCeEEEEcCC
Confidence 996 23333 234678888887 43 46777777755 6666654
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.79 E-value=2.1e-17 Score=162.65 Aligned_cols=290 Identities=12% Similarity=0.057 Sum_probs=181.2
Q ss_pred ceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCce--eEEEecCCcEEEEecC
Q 044557 21 YVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADK--LFSAHQDHKIRVWKIN 96 (362)
Q Consensus 21 ~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--l~s~~~dg~i~~w~~~ 96 (362)
.|.+++|+ |++|++++. ++|++||+.+........+ ..+...+..+.+++|. |+.++ ++.|.+|++.
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-------~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~ 180 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-------THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLA 180 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-------CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-------ccCCcccccccCCCCCCEEEEEe-CCcEEEEecC
Confidence 47888884 788888876 9999999876410001111 1123456777787653 65555 6799999987
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeee-eeEEeeecCceeEEEEecCCCEEEEEECCC-----------
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHK-TCTWVHHVDAVSALALTKDETLLYSVSWDR----------- 164 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~----------- 164 (362)
.+... . +...... .+.... ..........+..++|+|||++|+.++.|+
T Consensus 181 ~g~~~-----~---~~~~~~~-----------~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~ 241 (741)
T 2ecf_A 181 SGRQM-----Q---LTADGST-----------TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV 241 (741)
T ss_dssp TTEEE-----E---CCCCCCS-----------SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred CCCEE-----E---eccCCcc-----------ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence 54311 0 0000000 000000 000000112357789999999999988776
Q ss_pred ----------------------cEEEEECCC-ceEEEeeec-cCcccEEEEEEcCCCc-EEEEe-----CCCeEEEEeCC
Q 044557 165 ----------------------TIKIWRTSD-FKCLESITN-AHDDAINAVALSDDGD-VYTGS-----ADKKIKVWRRS 214 (362)
Q Consensus 165 ----------------------~i~iwd~~~-~~~~~~~~~-~h~~~v~~v~~~~~~~-~~s~~-----~dg~i~iw~~~ 214 (362)
.|.+||+.+ ++....... .|...+..++| |+|+ ++.++ .+..|.+||+.
T Consensus 242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~ 320 (741)
T 2ecf_A 242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA 320 (741)
T ss_dssp CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred CCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence 889999988 765443221 47778999999 9997 55443 35789999998
Q ss_pred CCCCcceeehhhhcccc----ceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE-EEeCC--
Q 044557 215 PGNKKHSLVDVLERHNS----GINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM-AVVSD-- 287 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~----~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~-- 287 (362)
++..... ...+.. .+..++|+|||+++++++.|+.+++|....... ...+..|...+..+ .|+++
T Consensus 321 ~g~~~~~----~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~----~~~l~~~~~~v~~~~~~s~dg~ 392 (741)
T 2ecf_A 321 SNQQRVL----AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK----AAALTHGNWSVDELLAVDEKAG 392 (741)
T ss_dssp TCCEEEE----EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC----EEESCCSSSCEEEEEEEETTTT
T ss_pred CCceEEE----EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC----eeeeeecceEEEeEeEEeCCCC
Confidence 7753221 122222 456889999999999999999988887763222 23466677777766 47754
Q ss_pred e-EEEeeCCC--cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCC---CcEEEEecc
Q 044557 288 L-VCSGSADK--TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLD---CDIKVWQIS 357 (362)
Q Consensus 288 ~-~~s~s~D~--~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D---~~i~~W~~~ 357 (362)
. +++++.|+ .++||+... .......+.+ ...+..++|+|+++ .++++.+.+ ..+.+|+..
T Consensus 393 ~l~~~~~~~~~~~~~l~~~~~-~g~~~~~l~~-~~~~~~~~~spdg~--------~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 393 LAYFRAGIESARESQIYAVPL-QGGQPQRLSK-APGMHSASFARNAS--------VYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp EEEEEECSSCTTCBEEEEEET-TCCCCEECCC-SCSEEEEEECTTSS--------EEEEEEEETTEEEEEEEEETT
T ss_pred EEEEEEeCCCCceEEEEEEEc-CCCCeeeccc-CCCceEEEECCCCC--------EEEEEecCCCCCCeEEEEEcC
Confidence 4 45666666 899998532 1233455655 66788999987754 344444433 357777753
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.79 E-value=3e-16 Score=140.08 Aligned_cols=268 Identities=11% Similarity=0.088 Sum_probs=169.1
Q ss_pred ccceeeeEec--CcEEEEecC-------CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC--ceeEEE-ec
Q 044557 19 NSYVSSLALA--GKFLYTGSS-------DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA--DKLFSA-HQ 86 (362)
Q Consensus 19 ~~~V~~l~~~--~~~l~t~s~-------Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~l~s~-~~ 86 (362)
...+..+.++ ++++++++. ++.|.+||..+... ..... . ......+.+.+ +.++.+ ..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~-------~-~~~~~~~~~s~dg~~l~v~~~~ 109 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV--TQAIH-------N-DLKPFGATINNTTQTLWFGNTV 109 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE--EEEEE-------E-SSCCCSEEEETTTTEEEEEETT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE--EEEEe-------c-CCCcceEEECCCCCEEEEEecC
Confidence 3456677774 567766663 67899999876431 11111 1 12234455554 345554 55
Q ss_pred CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE--CCC
Q 044557 87 DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS--WDR 164 (362)
Q Consensus 87 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~d~ 164 (362)
++.|.+||.+.++.. ..++..... .+. ......+.+++++|+++.+++++ .++
T Consensus 110 ~~~v~~~d~~~~~~~-------~~~~~~~~~-----~~~-------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 164 (353)
T 3vgz_A 110 NSAVTAIDAKTGEVK-------GRLVLDDRK-----RTE-------------EVRPLQPRELVADDATNTVYISGIGKES 164 (353)
T ss_dssp TTEEEEEETTTCCEE-------EEEESCCCC-----CCS-------------SCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred CCEEEEEeCCCCeeE-------EEEecCCCc-----ccc-------------ccCCCCCceEEECCCCCEEEEEecCCCc
Confidence 799999998765421 111000000 000 00011257899999999877776 478
Q ss_pred cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 165 TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
.|.+||..+++.+..+. .+...+.+++|+|++. +++++.++.|.+||..++...........++...+..++|+|+|+
T Consensus 165 ~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp EEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred eEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence 99999999998877664 2445578899999987 778888999999999876533222111122455678899999999
Q ss_pred EEEEEcC-CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEecCCCC
Q 044557 244 VLYSGAC-DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRG 319 (362)
Q Consensus 244 ~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~ 319 (362)
+|+.++. ++.|.+||..+.+. +..+.... ...++++++ ++++...++.|.+|+... .+.+..+... .
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~-~ 314 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGNI----LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS--YKVVKTFDTP-T 314 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCCE----EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT--TEEEEEEECC-S
T ss_pred EEEEEeCCCCEEEEEECCCCcE----EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC--CeEEEEEecC-C
Confidence 8777665 48999999976432 22222222 245667654 456666899999999643 4455555543 4
Q ss_pred cEEEEEeeecCC
Q 044557 320 PVKCLAAAIDND 331 (362)
Q Consensus 320 ~v~~~~~~~~~~ 331 (362)
.+.+++|+|+++
T Consensus 315 ~~~~~~~s~dg~ 326 (353)
T 3vgz_A 315 HPNSLALSADGK 326 (353)
T ss_dssp EEEEEEECTTSC
T ss_pred CCCeEEEcCCCC
Confidence 678899987654
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=1.4e-17 Score=163.47 Aligned_cols=284 Identities=10% Similarity=0.003 Sum_probs=173.4
Q ss_pred cceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc---eeEEEEEcCc--eeEEEecC-----
Q 044557 20 SYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG---AVKSLVVLAD--KLFSAHQD----- 87 (362)
Q Consensus 20 ~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~--~l~s~~~d----- 87 (362)
..+.+++|+ |+++++ +.||+|++||+.+.... ..+. .+.. .+.++.+++| .|++++.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~--~~~~-------~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~ 86 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST--VLIE-------GKKIESLRAIRYEISPDREYALFSYNVEPIYQ 86 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE--EEEC-------TTTTTTTTCSEEEECTTSSEEEEEESCCCCSS
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE--EEec-------cccccccccceEEECCCCCEEEEEecCcccee
Confidence 346777884 677766 78999999998764321 1111 1111 3677778765 47777654
Q ss_pred ----CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC
Q 044557 88 ----HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD 163 (362)
Q Consensus 88 ----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 163 (362)
+.|.+||+..+... .+... ..|...+..++|+|||+.||.++.
T Consensus 87 ~~~~~~i~~~d~~~~~~~-----~l~~~---------------------------~~~~~~~~~~~~SPdG~~la~~~~- 133 (723)
T 1xfd_A 87 HSYTGYYVLSKIPHGDPQ-----SLDPP---------------------------EVSNAKLQYAGWGPKGQQLIFIFE- 133 (723)
T ss_dssp SCCCSEEEEEESSSCCCE-----ECCCT---------------------------TCCSCCCSBCCBCSSTTCEEEEET-
T ss_pred ecceeeEEEEECCCCceE-----eccCC---------------------------ccccccccccEECCCCCEEEEEEC-
Confidence 78889998765420 00000 123445778899999999999885
Q ss_pred CcEEEEECCCceEEEeeeccCccc------------------EEEEEEcCCCc-EEEEeCCC------------------
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDA------------------INAVALSDDGD-VYTGSADK------------------ 206 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~------------------v~~v~~~~~~~-~~s~~~dg------------------ 206 (362)
+.|++||+.+++...... .+... +.+++|+|+|+ |++++.|+
T Consensus 134 ~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~ 212 (723)
T 1xfd_A 134 NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPT 212 (723)
T ss_dssp TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCc
Confidence 899999999877655433 22222 27899999997 66665442
Q ss_pred ----------------eEEEEeCCCCCCcceeeh--hhhccccceeEEEEecCCCEEEEEcC----CCcEEEEeccCCCC
Q 044557 207 ----------------KIKVWRRSPGNKKHSLVD--VLERHNSGINALALSCDGSVLYSGAC----DRSIIVWEKEEDDG 264 (362)
Q Consensus 207 ----------------~i~iw~~~~~~~~~~~~~--~~~~h~~~v~~i~~s~~~~~l~s~~~----d~~i~~wd~~~~~~ 264 (362)
.|++||+.++.....+.. ....+...+..++|+|||++|++.+. +..|++||+.+++.
T Consensus 213 ~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 213 VKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp CEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred ceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 799999987653222211 11224667899999999999877653 35799999876542
Q ss_pred cEEEEEeecCcccee----EEEEEeCC--eEE--EeeCCC------cEEEee-CCCCceeeeeEecCCCCcEEE-EEeee
Q 044557 265 NILVVGALRGHTKSI----LCMAVVSD--LVC--SGSADK------TIRIWR-GIDRNYTCLAVLEGHRGPVKC-LAAAI 328 (362)
Q Consensus 265 ~~~~~~~~~~h~~~v----~~~~~~~~--~~~--s~s~D~------~i~~W~-~~~~~~~~~~~l~~h~~~v~~-~~~~~ 328 (362)
.. +.. ..+...+ ..+.|+++ .++ ++..|+ .|.+|+ .......+...+..+...+.. ++|+|
T Consensus 293 ~~-~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp 369 (723)
T 1xfd_A 293 TK-KHE--DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE 369 (723)
T ss_dssp EE-EEE--EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred eE-EEE--eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence 21 111 1122322 25677754 444 355677 455565 222110013445543444544 68887
Q ss_pred cCCccCCCCCceEEEecCCC--CcEEEEeccc
Q 044557 329 DNDRCDSSDTSYLVCSGSLD--CDIKVWQISF 358 (362)
Q Consensus 329 ~~~~~~~~~~~~~l~s~s~D--~~i~~W~~~~ 358 (362)
+++ .+++++..| +.++||++..
T Consensus 370 dg~--------~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 370 KGN--------KIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp TTT--------EEEEEESSSCTTCCEEEEECS
T ss_pred CCC--------EEEEEEcCCCCcceEEEEEeC
Confidence 654 344455555 8899999854
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.78 E-value=5.1e-17 Score=165.83 Aligned_cols=273 Identities=10% Similarity=-0.013 Sum_probs=182.7
Q ss_pred CccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc-eeEEEEEc-CceeEEEecCCcEE-
Q 044557 18 HNSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG-AVKSLVVL-ADKLFSAHQDHKIR- 91 (362)
Q Consensus 18 H~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~-~~~l~s~~~dg~i~- 91 (362)
|...+.++.|+ |++|++++ ++.|.+|++...... .. ..+.. .+..+.+. +..++.++.+..+.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~---~~-------~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~ 362 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL---KV-------PEPLRIRYVRRGGDTKVAFIHGTREGDFLG 362 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE---EC-------SCCSCEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE---Ec-------cCCCcceEEeeeEcCCCeEEEEECCCceEE
Confidence 45678888876 56788877 899999997653211 00 11222 45556565 22477777777777
Q ss_pred EEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEEC
Q 044557 92 VWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRT 171 (362)
Q Consensus 92 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 171 (362)
+|++..+.. .. +..|...+..++|+||+++|++++.++.|++||+
T Consensus 363 ~~d~~~~~~--------~~---------------------------l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~ 407 (1045)
T 1k32_A 363 IYDYRTGKA--------EK---------------------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL 407 (1045)
T ss_dssp EEETTTCCE--------EE---------------------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEECCCCCc--------eE---------------------------ecCCccceeeeEECCCCCEEEEECCCCeEEEEEC
Confidence 888754321 00 0134567889999999999999999999999999
Q ss_pred CCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC----------CeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 172 SDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD----------KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 172 ~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d----------g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
.+++..... ..|...+.+++|+|+|+ +++++.+ +.|++||+.++. ...+..|...+..++|+|
T Consensus 408 ~tg~~~~~~-~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-----~~~l~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 408 ETGKPTVIE-RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-----IFAATTENSHDYAPAFDA 481 (1045)
T ss_dssp TTCCEEEEE-ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-----EEECSCSSSBEEEEEECT
T ss_pred CCCceEEec-cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-----EEEeeCCCcccCCceEcC
Confidence 988776544 36888889999999998 6666554 499999998753 223445777788999999
Q ss_pred CCCEEEEEcCCCcEEEEeccCCCC------cEE---------------------------------EEEeecCccceeEE
Q 044557 241 DGSVLYSGACDRSIIVWEKEEDDG------NIL---------------------------------VVGALRGHTKSILC 281 (362)
Q Consensus 241 ~~~~l~s~~~d~~i~~wd~~~~~~------~~~---------------------------------~~~~~~~h~~~v~~ 281 (362)
||++|+.++.++..+.|+...... ... .+..+..|...+..
T Consensus 482 dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~ 561 (1045)
T 1k32_A 482 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM 561 (1045)
T ss_dssp TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE
T ss_pred CCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhh
Confidence 999999999988877776432110 000 01123345566778
Q ss_pred EEEeCC--eEEE-----------eeC--CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 282 MAVVSD--LVCS-----------GSA--DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 282 ~~~~~~--~~~s-----------~s~--D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
+.++++ ++++ .+. +..|.+||...... ..+. ..+..++|+|+++ .|++++
T Consensus 562 ~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~---~~v~~~~~S~DG~---------~l~~~~ 626 (1045)
T 1k32_A 562 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV---TEVK---NNLTDLRLSADRK---------TVMVRK 626 (1045)
T ss_dssp EEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE---EEEE---EEEEEEEECTTSC---------EEEEEE
T ss_pred eEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcE---EEee---cCcceEEECCCCC---------EEEEEc
Confidence 888776 4554 123 34566666544332 2332 5688888887654 477776
Q ss_pred CCCcEEEEeccc
Q 044557 347 LDCDIKVWQISF 358 (362)
Q Consensus 347 ~D~~i~~W~~~~ 358 (362)
.| .|++||+..
T Consensus 627 ~~-~i~~~d~~~ 637 (1045)
T 1k32_A 627 DD-GKIYTFPLE 637 (1045)
T ss_dssp TT-SCEEEEESS
T ss_pred CC-cEEEEeCcc
Confidence 65 899999954
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.78 E-value=9.7e-16 Score=137.68 Aligned_cols=273 Identities=11% Similarity=0.100 Sum_probs=164.7
Q ss_pred cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecC----CcEEEEecCCCCCCcccceeee
Q 044557 36 SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQD----HKIRVWKINNQEPDHQKYTRLA 109 (362)
Q Consensus 36 s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~d----g~i~~w~~~~~~~~~~~~~~~~ 109 (362)
+.++.|.+|++......+.... ..+......+.+.++ .|++++.+ +.|.+|+++...... ..+.
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~-------~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~---~~~~ 93 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLS-------DAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL---HLLN 93 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEE-------EEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE---EEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEee-------cccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE---EEee
Confidence 4578999998754332221110 112344555666654 48888875 799999886431100 0110
Q ss_pred eccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEEECCCceEEEee----e---
Q 044557 110 TLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIWRTSDFKCLESI----T--- 181 (362)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~----~--- 181 (362)
. ...+......+++ ++++|++++ .++.|.+|++.....+..+ .
T Consensus 94 ~---------------------------~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 144 (361)
T 3scy_A 94 T---------------------------QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG 144 (361)
T ss_dssp E---------------------------EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC
T ss_pred E---------------------------eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC
Confidence 0 0112234556666 788777776 6789999998753322111 1
Q ss_pred ------ccCcccEEEEEEcCCCc-EEEE-eCCCeEEEEeCCCCCC----c-cee----ehhhhccccceeEEEEecCCCE
Q 044557 182 ------NAHDDAINAVALSDDGD-VYTG-SADKKIKVWRRSPGNK----K-HSL----VDVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 182 ------~~h~~~v~~v~~~~~~~-~~s~-~~dg~i~iw~~~~~~~----~-~~~----~~~~~~h~~~v~~i~~s~~~~~ 244 (362)
..+...+.+++|+|+|+ ++++ ..++.|.+|++..... . ... ......+...+..++|+|||++
T Consensus 145 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 145 SGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp CCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred CCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence 01123457899999997 5544 4588999999875432 1 100 0111123455788999999998
Q ss_pred EEEEc-CCCcEEEEeccCCCCcEEEEE---eecCccceeEEEEEeCC--eEEE-eeC-CCcEEEeeCC--CCceeeeeEe
Q 044557 245 LYSGA-CDRSIIVWEKEEDDGNILVVG---ALRGHTKSILCMAVVSD--LVCS-GSA-DKTIRIWRGI--DRNYTCLAVL 314 (362)
Q Consensus 245 l~s~~-~d~~i~~wd~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~--~~~s-~s~-D~~i~~W~~~--~~~~~~~~~l 314 (362)
|++++ .++.|.+|++.++ ....+. ....+......++++++ ++++ ... ++.|.+|+.. ......+..+
T Consensus 225 l~v~~~~~~~v~v~~~~~g--~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 225 AYLINEIGGTVIAFRYADG--MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp EEEEETTTCEEEEEEEETT--EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEcCCCCeEEEEEecCC--ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence 87777 6899999998743 222222 22334445678888765 5544 444 5899999974 2334455555
Q ss_pred cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 315 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.. ...+.+++|+|+++ ++++++..++.|.+|+++.
T Consensus 303 ~~-g~~~~~~~~spdg~--------~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 303 LT-GIHPRNFIITPNGK--------YLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EC-SSCCCEEEECTTSC--------EEEEEETTTTEEEEEEECT
T ss_pred cC-CCCCceEEECCCCC--------EEEEEECCCCCEEEEEEEC
Confidence 54 55678899987653 3444455789999987753
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.78 E-value=1.6e-16 Score=140.82 Aligned_cols=228 Identities=11% Similarity=0.044 Sum_probs=149.9
Q ss_pred eEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEE
Q 044557 81 LFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSV 160 (362)
Q Consensus 81 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 160 (362)
+++.+.+++|.+||...++... ....+...+ +++|+|++++++++
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~----------------------------------~~~~~~~~~-~~~~s~dg~~l~~~ 57 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILN----------------------------------QITLGYDFV-DTAITSDCSNVVVT 57 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEE----------------------------------EEECCCCEE-EEEECSSSCEEEEE
T ss_pred EEEecCCCeEEEEeCcccceee----------------------------------eEEccCCcc-eEEEcCCCCEEEEE
Confidence 5667789999999987654210 001122345 89999999977666
Q ss_pred EC-CCcEEEEECCCceE-EEeeeccCcccEEEEEEcCCCc-EEEEeCC-C--eEEEEeCCCCCCcceeehhhhcccccee
Q 044557 161 SW-DRTIKIWRTSDFKC-LESITNAHDDAINAVALSDDGD-VYTGSAD-K--KIKVWRRSPGNKKHSLVDVLERHNSGIN 234 (362)
Q Consensus 161 s~-d~~i~iwd~~~~~~-~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-g--~i~iw~~~~~~~~~~~~~~~~~h~~~v~ 234 (362)
+. ++.|.+||..+++. ...+. .+..+..+++|+|+|+ ++++..+ + .|.+||+.++..... +. ......
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~----~~-~~~~~~ 131 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQ-EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST----IP-IPYDAV 131 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEE-ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE----EE-CCTTEE
T ss_pred eCCCCeEEEEECCCCceeEEecc-cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE----EE-CCCCcc
Confidence 65 89999999998876 55443 4455555599999998 5544444 2 999999987643222 22 234468
Q ss_pred EEEEecCCCEEEEE-cCCCc-EEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCce-
Q 044557 235 ALALSCDGSVLYSG-ACDRS-IIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNY- 308 (362)
Q Consensus 235 ~i~~s~~~~~l~s~-~~d~~-i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~- 308 (362)
.++|+|||++|+++ ..++. |.+|++......................++++++ +++++..++.|++|+......
T Consensus 132 ~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 132 GIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI 211 (331)
T ss_dssp EEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred ceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence 99999999866655 45588 9999987533211110111123344678888765 456667799999999643322
Q ss_pred eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 309 TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 309 ~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..+..+..+ ..+..++|+|++. +++++...++.|.+||+..
T Consensus 212 ~~~~~~~~~-~~~~~~~~spdg~--------~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 212 TLLNAVGTN-NLPGTIVVSRDGS--------TVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp EEEEEEECS-SCCCCEEECTTSS--------EEEEECSSEEEEEEEETTT
T ss_pred ceeeeccCC-CCCceEEECCCCC--------EEEEEEcCCCEEEEEECCC
Confidence 125555543 5677888877653 3556666788999999863
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.78 E-value=4e-16 Score=139.36 Aligned_cols=257 Identities=16% Similarity=0.197 Sum_probs=157.3
Q ss_pred cCccceeeeEec--CcEEEEecC---CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe-cCC
Q 044557 17 GHNSYVSSLALA--GKFLYTGSS---DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH-QDH 88 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~---Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~-~dg 88 (362)
.+......++++ |+ |++++. ++.|++||+.......... ...+...+..+.+.++ .|++++ .++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~-------~~~~~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT-------VVAPGTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE-------EEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee-------eecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 455667778774 66 555544 6999999985432111111 1112334556666654 488777 679
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
+|.+|++..... ...+......+.. +. ...+...+.+++|+|+++++++...++.|++
T Consensus 109 ~v~v~~~~~~g~----~~~~~~~~~~~~~------p~------------~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~ 166 (347)
T 3hfq_A 109 TAEVMKIAADGA----LTLTDTVQHSGHG------PR------------PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYV 166 (347)
T ss_dssp EEEEEEECTTSC----EEEEEEEECCCCC------SS------------TTCSSCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEEEEEeCCCCC----eeecceeecCCCC------CC------------ccccCCCceEEEECCCCcEEEEeCCCCEEEE
Confidence 999999864221 0111111000000 00 0012235788999999997766677889999
Q ss_pred EECC-CceEE--EeeeccCcccEEEEEEcCCCc-EEE-EeCCCeEEEEeCCCCCCcceeehhhhcc------ccceeEEE
Q 044557 169 WRTS-DFKCL--ESITNAHDDAINAVALSDDGD-VYT-GSADKKIKVWRRSPGNKKHSLVDVLERH------NSGINALA 237 (362)
Q Consensus 169 wd~~-~~~~~--~~~~~~h~~~v~~v~~~~~~~-~~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~h------~~~v~~i~ 237 (362)
|++. +++.. ..+.......+..++|+|+|+ +++ ...++.|.+|++................ ...+..++
T Consensus 167 ~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 167 YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 9998 44332 222222334678899999997 554 5678899999987522221111111111 14578899
Q ss_pred EecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeC-CCcEEEeeCC
Q 044557 238 LSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSA-DKTIRIWRGI 304 (362)
Q Consensus 238 ~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~-D~~i~~W~~~ 304 (362)
|+|||++|+ +...++.|.+|++... +....+..+..+...+..++|+++ ++++++. ++.|.+|+..
T Consensus 247 ~spdG~~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 247 LSHDGHFLYVSNRGYNTLAVFAVTAD-GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEECGG-GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEECCC-CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 999999885 5556899999998642 234455566666667888999865 5666654 5899999643
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=7.4e-16 Score=137.53 Aligned_cols=198 Identities=10% Similarity=0.067 Sum_probs=136.7
Q ss_pred ceeEEEEecCCCEEEE-EECCCcEEEEECCCceEEEeeeccCcc--------cEEEEEEcCCCc-EEEEe--CCCeEEEE
Q 044557 144 AVSALALTKDETLLYS-VSWDRTIKIWRTSDFKCLESITNAHDD--------AINAVALSDDGD-VYTGS--ADKKIKVW 211 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~h~~--------~v~~v~~~~~~~-~~s~~--~dg~i~iw 211 (362)
.+..++++|++++++. ...++.|.+||..+++.+..+...+.. .+.+++|+|++. +++++ .++.|.+|
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 4567889999995554 455799999999999887766543221 268899999987 55544 58899999
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCC--e
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSD--L 288 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~--~ 288 (362)
|..++... ..+..+...+..++|+|+|++|++++.++.|.+||..+.+.. ..... ..++...+..++++++ .
T Consensus 170 d~~~~~~~----~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 170 DGGNIKLK----TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL-SRKKLLDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp ETTTTEEE----EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE-EEEECCCSSSCCCEEEEEEETTTTE
T ss_pred cCCCCceE----EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE-EEEEcCCCCCCcccceEEECCCCCE
Confidence 99876432 222224445788999999999999999999999998764321 11111 1124556777888754 4
Q ss_pred -EEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 289 -VCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 289 -~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+++...++.|.+|+... .+.+..+.... ...++|+|+++ +++++...|+.|.+||...
T Consensus 245 l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~--~~~~~~s~dg~--------~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 245 AFITDSKAAEVLVVDTRN--GNILAKVAAPE--SLAVLFNPARN--------EAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp EEEEESSSSEEEEEETTT--CCEEEEEECSS--CCCEEEETTTT--------EEEEEETTTTEEEEEETTT
T ss_pred EEEEeCCCCEEEEEECCC--CcEEEEEEcCC--CceEEECCCCC--------EEEEEECCCCeEEEEECCC
Confidence 45555669999999643 34455554332 24577876643 4667777899999999853
No 154
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.74 E-value=5.9e-16 Score=151.91 Aligned_cols=286 Identities=9% Similarity=0.016 Sum_probs=168.0
Q ss_pred cceeeecccCcc---ceeeeEec--CcEEEEecCC---------CeEEEeecCCCCcccceeeeccceeEEeecceeEEE
Q 044557 9 HHCLTTLKGHNS---YVSSLALA--GKFLYTGSSD---------NEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSL 74 (362)
Q Consensus 9 ~~~~~tl~gH~~---~V~~l~~~--~~~l~t~s~D---------g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 74 (362)
.++...+.+|.. .|.+++|+ |++|++++.+ +.|++||+.+.... .+... ..+...+..+
T Consensus 47 g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~~~----~~~~~~~~~~ 119 (723)
T 1xfd_A 47 NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---SLDPP----EVSNAKLQYA 119 (723)
T ss_dssp CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---ECCCT----TCCSCCCSBC
T ss_pred CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE---eccCC----cccccccccc
Confidence 345566677765 48999884 8899998775 78889998764321 11000 0012235566
Q ss_pred EEcCc--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec---------C
Q 044557 75 VVLAD--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV---------D 143 (362)
Q Consensus 75 ~~~~~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~ 143 (362)
.+++| .|+.++ ++.|++|++..+... .+..... .. . .+.++. +
T Consensus 120 ~~SPdG~~la~~~-~~~i~~~~~~~g~~~-----~~~~~~~--~~----------~--------~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 120 GWGPKGQQLIFIF-ENNIYYCAHVGKQAI-----RVVSTGK--EG----------V--------IYNGLSDWLYEEEILK 173 (723)
T ss_dssp CBCSSTTCEEEEE-TTEEEEESSSSSCCE-----EEECCCB--TT----------T--------EEEEECCHHHHHTTSS
T ss_pred EECCCCCEEEEEE-CCeEEEEECCCCceE-----EEecCCC--CC----------c--------eECcccceeEEEEecc
Confidence 67665 466665 489999998764421 1100000 00 0 001111 2
Q ss_pred ceeEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCceEEEeeecc-----C
Q 044557 144 AVSALALTKDETLLYSVSWDR----------------------------------TIKIWRTSDFKCLESITNA-----H 184 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~----------------------------------~i~iwd~~~~~~~~~~~~~-----h 184 (362)
.+.+++|+|||+.|+.++.|+ .|++||+.+++....+... +
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 347899999999999987653 7999999888754444321 3
Q ss_pred cccEEEEEEcCCCcEE-EEe----CCCeEEEEeCCCCCCcceeehhhhccccce----eEEEEecCCCEEEE--EcCCC-
Q 044557 185 DDAINAVALSDDGDVY-TGS----ADKKIKVWRRSPGNKKHSLVDVLERHNSGI----NALALSCDGSVLYS--GACDR- 252 (362)
Q Consensus 185 ~~~v~~v~~~~~~~~~-s~~----~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v----~~i~~s~~~~~l~s--~~~d~- 252 (362)
...+..++|+|+|+++ +.. .+..|.+||+.++...... . ..+...+ ..++|+|||+.|+. +..|+
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~-~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH-E--DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE-E--EECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE-E--eccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 5678999999999844 443 2357999999876532211 1 1223333 37899999997775 45667
Q ss_pred -----cEEEEeccCCCCcEEEEEeecCccceeE-EEEEeCC--eEEEe-eCC--CcEEEeeCCCCceeeeeEecC---CC
Q 044557 253 -----SIIVWEKEEDDGNILVVGALRGHTKSIL-CMAVVSD--LVCSG-SAD--KTIRIWRGIDRNYTCLAVLEG---HR 318 (362)
Q Consensus 253 -----~i~~wd~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~--~~~s~-s~D--~~i~~W~~~~~~~~~~~~l~~---h~ 318 (362)
.|.+||........ ....+..+...+. .++|+++ .|+.. ..| +.++||+...........+.+ |.
T Consensus 331 ~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 409 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSND-NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVEN 409 (723)
T ss_dssp SSCEEEEEEECSSCCSSSC-CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSS
T ss_pred CcceeEEEEEeccCCCCcc-ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCC
Confidence 46667622222100 0112222223333 3577754 66544 444 889999864322212333443 67
Q ss_pred CcEEEEEeeecCC
Q 044557 319 GPVKCLAAAIDND 331 (362)
Q Consensus 319 ~~v~~~~~~~~~~ 331 (362)
..+..++|+|+++
T Consensus 410 ~~~~~~~~spdg~ 422 (723)
T 1xfd_A 410 CTYFSASFSHSMD 422 (723)
T ss_dssp CCCCEEEECTTSS
T ss_pred CCeEEEEECCCCC
Confidence 7888999988765
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.3e-16 Score=156.46 Aligned_cols=273 Identities=11% Similarity=0.038 Sum_probs=168.4
Q ss_pred eeEe--cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc---eeEEEEEcCc--eeEEEec---------C
Q 044557 24 SLAL--AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG---AVKSLVVLAD--KLFSAHQ---------D 87 (362)
Q Consensus 24 ~l~~--~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~--~l~s~~~---------d 87 (362)
++.| ++++++++ .|++|++||+.+..... .. ..+.. .+.++.+++| .|+.++. +
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~--~~-------~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYT--IL-------SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEE--EE-------CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEE--EE-------ccccccccceeeEEECCCCCeEEEEecCceeEEeecc
Confidence 5666 36555554 69999999987643211 00 00111 2667777765 4666655 7
Q ss_pred CcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEE
Q 044557 88 HKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIK 167 (362)
Q Consensus 88 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~ 167 (362)
++|++||+..++.... .. ....+..++|+|||+.||.++ |+.|+
T Consensus 90 ~~i~~~d~~~g~~~~~-----~~------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~ 133 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRG-----NE------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIY 133 (719)
T ss_dssp EEEEEEETTTTEECCS-----SC------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred eEEEEEECCCCccccc-----ee------------------------------cCcccccceECCCCCEEEEEE-CCeEE
Confidence 8999999876431000 00 013467789999999999886 78999
Q ss_pred EEECCCceEEEeeeccCcccE-----------------EEEEEcCCCc-EEEEeCCC-----------------------
Q 044557 168 IWRTSDFKCLESITNAHDDAI-----------------NAVALSDDGD-VYTGSADK----------------------- 206 (362)
Q Consensus 168 iwd~~~~~~~~~~~~~h~~~v-----------------~~v~~~~~~~-~~s~~~dg----------------------- 206 (362)
+|++.+++..+....++...+ .+++|+|||+ |++++.|.
T Consensus 134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 999988876543323333322 4799999997 66665442
Q ss_pred -----------eEEEEeCCCCCCc--ceee--hhhhccccceeEEEEecCCCEEEEEcCC----CcEEEEe----ccCCC
Q 044557 207 -----------KIKVWRRSPGNKK--HSLV--DVLERHNSGINALALSCDGSVLYSGACD----RSIIVWE----KEEDD 263 (362)
Q Consensus 207 -----------~i~iw~~~~~~~~--~~~~--~~~~~h~~~v~~i~~s~~~~~l~s~~~d----~~i~~wd----~~~~~ 263 (362)
.|++||+.++... ..+. ..+..|...+..++|+||++.+++.... ..|.+|| ..+++
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 7889998765321 0111 2345678889999999998877774432 2488888 54422
Q ss_pred CcEEEEEee----cCccceeE-----EEEEeCC--e--EEEeeCCCc--EEEeeCCCCceeeeeEecCCCCcEEEEEeee
Q 044557 264 GNILVVGAL----RGHTKSIL-----CMAVVSD--L--VCSGSADKT--IRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI 328 (362)
Q Consensus 264 ~~~~~~~~~----~~h~~~v~-----~~~~~~~--~--~~s~s~D~~--i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~ 328 (362)
.. ..+ .+|...+. .+.|+++ . +++...|+. |.+|+..... ...+..+...|..+.+.
T Consensus 294 ~~----~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---~~~lt~~~~~v~~~~~~- 365 (719)
T 1z68_A 294 CP----KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---AIQITSGKWEAINIFRV- 365 (719)
T ss_dssp CC----GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---CEECSCSSSCEEEEEEE-
T ss_pred eE----EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---eEecccCceEEEEEEEE-
Confidence 11 112 35555555 6677754 2 334556665 4445543222 34566666678877775
Q ss_pred cCCccCCCCCceEEEecCC----CCcEEEEeccc
Q 044557 329 DNDRCDSSDTSYLVCSGSL----DCDIKVWQISF 358 (362)
Q Consensus 329 ~~~~~~~~~~~~~l~s~s~----D~~i~~W~~~~ 358 (362)
++ +.+++++.. ++.+++|.+..
T Consensus 366 d~--------~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 366 TQ--------DSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CS--------SEEEEEESCGGGCTTCBEEEEEEC
T ss_pred eC--------CEEEEEEecCCCCCceEEEEEEeC
Confidence 33 345666655 58899998864
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=1.5e-15 Score=136.93 Aligned_cols=247 Identities=11% Similarity=0.073 Sum_probs=149.5
Q ss_pred eeEEEEEcCc--eeEEEecCCcEEEEecC-CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCcee
Q 044557 70 AVKSLVVLAD--KLFSAHQDHKIRVWKIN-NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVS 146 (362)
Q Consensus 70 ~v~~i~~~~~--~l~s~~~dg~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 146 (362)
.+..+.+.++ .|++++.+ .|.+|++. .+.. ......+ ..+.+.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-----~~~~~~~----------------------------~~g~~~ 86 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-----VHEASHP----------------------------IGGHPR 86 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-----EEEEEEE----------------------------CCSSGG
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-----EEeeEee----------------------------cCCCCc
Confidence 4556666654 48888888 99999985 3211 0000000 001234
Q ss_pred EEEEecCCCE--EEEEE-------------CCCcEEEEECC-CceEEEeee---ccCcccEEEEEEcCCCc-EEEEe-CC
Q 044557 147 ALALTKDETL--LYSVS-------------WDRTIKIWRTS-DFKCLESIT---NAHDDAINAVALSDDGD-VYTGS-AD 205 (362)
Q Consensus 147 ~~~~~~~~~~--l~s~s-------------~d~~i~iwd~~-~~~~~~~~~---~~h~~~v~~v~~~~~~~-~~s~~-~d 205 (362)
.++++|++++ ++++. .++.+.+|++. +++....+. ..+...+.+++|+|+|+ ++++. .+
T Consensus 87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~ 166 (365)
T 1jof_A 87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA 166 (365)
T ss_dssp GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC
Confidence 4678999984 55553 68999999997 455433332 12456789999999997 55554 46
Q ss_pred CeEEEEeCC-CCCCcceeehhhh--ccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEE----EEEeec----
Q 044557 206 KKIKVWRRS-PGNKKHSLVDVLE--RHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNIL----VVGALR---- 273 (362)
Q Consensus 206 g~i~iw~~~-~~~~~~~~~~~~~--~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~----~~~~~~---- 273 (362)
+.|++|++. ++.. .....+. .|...+..++|+|||++|++++. +++|.+|+.....+... .+..+.
T Consensus 167 ~~v~~~~~~~~g~~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (365)
T 1jof_A 167 NKLWTHRKLASGEV--ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp TEEEEEEECTTSCE--EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred CEEEEEEECCCCCE--EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence 899999997 5432 1111121 23456889999999999988775 78999998754333321 222332
Q ss_pred Cccc------eeEEEE-EeCC--eEEEeeC-CC-----cEEEeeCCC-Cceeeee-EecCCCCcEEEEEeeecCCccCCC
Q 044557 274 GHTK------SILCMA-VVSD--LVCSGSA-DK-----TIRIWRGID-RNYTCLA-VLEGHRGPVKCLAAAIDNDRCDSS 336 (362)
Q Consensus 274 ~h~~------~v~~~~-~~~~--~~~s~s~-D~-----~i~~W~~~~-~~~~~~~-~l~~h~~~v~~~~~~~~~~~~~~~ 336 (362)
+|.. .+..++ ++++ +++++.. +. .|++|+... .....+. .+..+...+..++|+|..-
T Consensus 245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~----- 319 (365)
T 1jof_A 245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW----- 319 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT-----
T ss_pred CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc-----
Confidence 2232 577888 8765 5555443 23 899998642 2222111 2333555566778887210
Q ss_pred CCceEEEecCC-CCcEEEEeccc
Q 044557 337 DTSYLVCSGSL-DCDIKVWQISF 358 (362)
Q Consensus 337 ~~~~~l~s~s~-D~~i~~W~~~~ 358 (362)
++.+|++++. +++|++|+++.
T Consensus 320 -dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 320 -SDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp -CTTEEEEECSSSCEEEEEEEET
T ss_pred -CCCEEEEEEcCCCeEEEEEEch
Confidence 1234656554 58999999853
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.73 E-value=1.5e-15 Score=135.20 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=143.6
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE-
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY- 158 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~- 158 (362)
.+++++.+++|.+||+.++... ..++ .+....+..++|+|++++++
T Consensus 13 ~~v~~~~~~~v~~~d~~~~~~~-------~~~~--------------------------~~~~~~~~~~~~s~dg~~~~v 59 (349)
T 1jmx_B 13 YMIVTNYPNNLHVVDVASDTVY-------KSCV--------------------------MPDKFGPGTAMMAPDNRTAYV 59 (349)
T ss_dssp EEEEEETTTEEEEEETTTTEEE-------EEEE--------------------------CSSCCSSCEEEECTTSSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEE-------EEEe--------------------------cCCCCCCceeEECCCCCEEEE
Confidence 3678889999999998654210 0000 00111356789999998655
Q ss_pred EEECCCcEEEEECCCceEEEeeeccC-----cccEEEEEEcCCCc-EEEEeCC------------CeEEEEeCCCCCCcc
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAH-----DDAINAVALSDDGD-VYTGSAD------------KKIKVWRRSPGNKKH 220 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h-----~~~v~~v~~~~~~~-~~s~~~d------------g~i~iw~~~~~~~~~ 220 (362)
++..++.|.+||+.+++.+..+...+ ...+..++|+|+|+ +++++.+ +.|.+||+.++....
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 55578999999999988776665333 23367899999997 6666654 899999987643221
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc------------------------
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT------------------------ 276 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~------------------------ 276 (362)
..... .+...+.+++|+|||+ +++++. .|++||..+.+.. ..+..+.
T Consensus 140 -~~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (349)
T 1jmx_B 140 -PVRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYT----VALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 210 (349)
T ss_dssp -CSEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEE----EEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred -eeeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCcee----ccccccccCCccccCccceeeecCCCcceeE
Confidence 11111 2344688899999999 666654 4999998754311 1111110
Q ss_pred --------------------------------------------ceeEEEEEeC-C--eEEEeeCCCcEEEeeCCCCcee
Q 044557 277 --------------------------------------------KSILCMAVVS-D--LVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 277 --------------------------------------------~~v~~~~~~~-~--~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
..+..+++++ + +++++ ++.|.+|+... .+
T Consensus 211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~--~~ 286 (349)
T 1jmx_B 211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ--RK 286 (349)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT--TE
T ss_pred EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc--Ce
Confidence 1223444445 3 56655 88999999643 44
Q ss_pred eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 310 ~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
.+..+.. ...+.+++|+|+++ +|++++.|+.|++||+..
T Consensus 287 ~~~~~~~-~~~~~~~~~s~dg~---------~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 287 LIKAANL-DHTYYCVAFDKKGD---------KLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEEEEEC-SSCCCEEEECSSSS---------CEEEESBSSEEEEEETTT
T ss_pred EEEEEcC-CCCccceEECCCCC---------EEEEecCCCeEEEEeccc
Confidence 4555542 23467889987653 355677889999999863
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.68 E-value=8.2e-16 Score=147.24 Aligned_cols=226 Identities=11% Similarity=0.099 Sum_probs=151.2
Q ss_pred ceeEEEEEcCc--eeEEEec-CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCce
Q 044557 69 GAVKSLVVLAD--KLFSAHQ-DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAV 145 (362)
Q Consensus 69 ~~v~~i~~~~~--~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 145 (362)
.++.++.+++| .|+.++. ||++++|+++.+.. ..+. .++...+
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~--------~~lt--------------------------~~~~~~~ 67 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET--------VKLN--------------------------REPINSV 67 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE--------EECC--------------------------SSCCSEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCc--------Eeee--------------------------ccccccc
Confidence 35667766544 5777766 99999999743221 0000 0122467
Q ss_pred eEEEEecCCCEEEEEEC---CCcEEEEECCC---ceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCC
Q 044557 146 SALALTKDETLLYSVSW---DRTIKIWRTSD---FKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~---d~~i~iwd~~~---~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~ 217 (362)
..++|+|| +++++++. +...++|.+.. +... .+... ..+...+|+|+|+ +++.+.++.+.+||+.++.
T Consensus 68 ~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~ 143 (582)
T 3o4h_A 68 LDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG 143 (582)
T ss_dssp CEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred ccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence 88899999 88888775 55566765432 2222 23222 2334567777774 4444444555599998764
Q ss_pred CcceeehhhhccccceeEEEEecCCCEEEEEcCC----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEE
Q 044557 218 KKHSLVDVLERHNSGINALALSCDGSVLYSGACD----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCS 291 (362)
Q Consensus 218 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s 291 (362)
.. .+ ..+.. .+++|+|||++|++++.| +.|++||+.+++. ..+.+|...+...+|+++ .+++
T Consensus 144 ~~-~l----~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-----~~l~~~~~~~~~~~~SpDG~~l~~ 211 (582)
T 3o4h_A 144 LR-EL----ARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-----RVFDSGEGSFSSASISPGMKVTAG 211 (582)
T ss_dssp EE-EE----EEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-----EEECCSSCEEEEEEECTTSCEEEE
T ss_pred EE-Ee----ecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-----eEeecCCCccccceECCCCCEEEE
Confidence 22 11 12222 789999999999988887 7899999876542 245678888899999876 7888
Q ss_pred eeCCC--cEEEeeCCCCceeeeeEecCCCCcEEEEE--------eeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 292 GSADK--TIRIWRGIDRNYTCLAVLEGHRGPVKCLA--------AAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 292 ~s~D~--~i~~W~~~~~~~~~~~~l~~h~~~v~~~~--------~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+..|+ .|++|+.... ... .+.+|...+..++ |+|++ .++++++.|++++||++
T Consensus 212 ~~~~~~~~i~~~d~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~spdg---------~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 212 LETAREARLVTVDPRDG--SVE-DLELPSKDFSSYRPTAITWLGYLPDG---------RLAVVARREGRSAVFID 274 (582)
T ss_dssp EECSSCEEEEEECTTTC--CEE-ECCCSCSHHHHHCCSEEEEEEECTTS---------CEEEEEEETTEEEEEET
T ss_pred ccCCCeeEEEEEcCCCC--cEE-EccCCCcChhhhhhccccceeEcCCC---------cEEEEEEcCCcEEEEEE
Confidence 88888 8999986443 333 6778887777666 76543 57899999999999997
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.68 E-value=3.1e-15 Score=132.39 Aligned_cols=220 Identities=12% Similarity=0.057 Sum_probs=142.8
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecC---ceeEEEEecCCCE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVD---AVSALALTKDETL 156 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~ 156 (362)
.+++++.+++|.+||+..++. ...+ .... .+..++|+|+++.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~-------~~~~----------------------------~~~~~~~~~~~~~~s~dg~~ 47 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAV-------DKVI----------------------------TIADAGPTPMVPMVAPGGRI 47 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEE-------EEEE----------------------------ECTTCTTCCCCEEECTTSSE
T ss_pred EEEEcCCCCeEEEEECCCCcE-------EEEE----------------------------EcCCCCCCccceEEcCCCCE
Confidence 478889999999999865421 0000 1112 3677899999976
Q ss_pred E-EEEECCCcEEEEECCCceEEEeeeccC----cccEEEEEEcCCCc-EEEEe------------CCCeEEEEeCCCCCC
Q 044557 157 L-YSVSWDRTIKIWRTSDFKCLESITNAH----DDAINAVALSDDGD-VYTGS------------ADKKIKVWRRSPGNK 218 (362)
Q Consensus 157 l-~s~s~d~~i~iwd~~~~~~~~~~~~~h----~~~v~~v~~~~~~~-~~s~~------------~dg~i~iw~~~~~~~ 218 (362)
+ ++++.++.|.+||+.+++.+..+...+ ...+..++|+|+|+ ++++. .++.|.+||+.++..
T Consensus 48 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 127 (337)
T 1pby_B 48 AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR 127 (337)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred EEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE
Confidence 5 455667899999999988776665332 22567899999996 66554 579999999976543
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc--ceeEEEEEeCCeE-EEeeCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT--KSILCMAVVSDLV-CSGSAD 295 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~-~s~s~D 295 (362)
... +. ....+..++|+|+|++|+++ ++.|++||+.+.+ ....+..+. ..+ .+...+..+ +++..+
T Consensus 128 ~~~----~~-~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~----~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~ 195 (337)
T 1pby_B 128 RKA----FE-APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT----LVEDKPIQSWEAET-YAQPDVLAVWNQHESS 195 (337)
T ss_dssp EEE----EE-CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE----EEEEECSTTTTTTT-BCCCBCCCCCCCCTTT
T ss_pred EEE----Ee-CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCc----EeeeeeccccCCCc-eeCCCccEEeeeccCC
Confidence 221 11 23457789999999998888 6899999987542 122232222 222 222222322 233233
Q ss_pred C-----------------------cEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEE
Q 044557 296 K-----------------------TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIK 352 (362)
Q Consensus 296 ~-----------------------~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~ 352 (362)
+ .|.+|+....... ...+..|...+.+++|+|++. +|+++ |+.|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~---------~l~~~--~~~v~ 263 (337)
T 1pby_B 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKT---------RAFGA--YNVLE 263 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSS---------EEEEE--ESEEE
T ss_pred CceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCC---------EEEEe--CCeEE
Confidence 3 4688886544333 334556777888999987643 45555 79999
Q ss_pred EEeccc
Q 044557 353 VWQISF 358 (362)
Q Consensus 353 ~W~~~~ 358 (362)
+||+..
T Consensus 264 ~~d~~~ 269 (337)
T 1pby_B 264 SFDLEK 269 (337)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 999853
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.66 E-value=1.7e-14 Score=128.41 Aligned_cols=238 Identities=11% Similarity=0.104 Sum_probs=147.6
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeec-ceeEEEEEcCc--eeE-EEecCCcEEEEecCCCCCCcc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGK-GAVKSLVVLAD--KLF-SAHQDHKIRVWKINNQEPDHQ 103 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~--~l~-s~~~dg~i~~w~~~~~~~~~~ 103 (362)
.+.++++++.+++|++||..+... ...+ ..+. .....+.+.++ .++ +...++.|.+||+.+++..
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~--~~~~-------~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~-- 78 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTV--YKSC-------VMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT-- 78 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEE--EEEE-------ECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--
T ss_pred CCEEEEEeCCCCeEEEEECCCCcE--EEEE-------ecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE--
Confidence 467899999999999999875431 1111 1111 12445666654 354 4456899999998654311
Q ss_pred cceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC------------CcEEEEEC
Q 044557 104 KYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD------------RTIKIWRT 171 (362)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------------~~i~iwd~ 171 (362)
.....+... ......+..++|+|++++|++++.+ +.|.+||+
T Consensus 79 ---~~~~~~~~~-----------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~ 132 (349)
T 1jmx_B 79 ---FHANLSSVP-----------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 132 (349)
T ss_dssp ---EEEESCCST-----------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred ---EEEEccccc-----------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence 000000000 0001235788999999999998865 89999999
Q ss_pred CCceE---EEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh----------------------
Q 044557 172 SDFKC---LESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL---------------------- 226 (362)
Q Consensus 172 ~~~~~---~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~---------------------- 226 (362)
.+++. +.... +...+.+++|+|+|++++++. .|.+||..+++....+....
T Consensus 133 ~~~~~~~~~~~~~--~~~~~~~~~~s~dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (349)
T 1jmx_B 133 ADGLEAKPVRTFP--MPRQVYLMRAADDGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 208 (349)
T ss_dssp GGGGGBCCSEEEE--CCSSCCCEEECTTSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred CCccccceeeecc--CCCcccceeECCCCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcce
Confidence 87432 23232 233578899999999666543 49999988765332211000
Q ss_pred ------------------------------------------hccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCC
Q 044557 227 ------------------------------------------ERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 227 ------------------------------------------~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
..+...+..++|+| ||++++++ ++.|.+||+.+.+
T Consensus 209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 00011345677889 99999988 8899999987632
Q ss_pred CcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 264 GNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
.+..+.. ...+.+++++++ .+++++.++.|++|+... .+.+..+.
T Consensus 287 ----~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~--~~~~~~~~ 333 (349)
T 1jmx_B 287 ----LIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT--LEKVKNIK 333 (349)
T ss_dssp ----EEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTT--TEEEEEEE
T ss_pred ----EEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccc--cceeeeee
Confidence 1222222 234667888754 677788899999999643 34444443
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=150.19 Aligned_cols=200 Identities=15% Similarity=0.088 Sum_probs=128.9
Q ss_pred ceeEEEEecCCCEEEEEEC---------CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCC
Q 044557 144 AVSALALTKDETLLYSVSW---------DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRS 214 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~---------d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~ 214 (362)
.+.+++|+|||++|+.++. |+.|++||+.+++.+.... ....+..++|+|+|+.++...|+.|++|++.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~--l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE--LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC--CCSSBCCEEECSSTTCEEEEETTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee--cCcccccceECCCCCEEEEEECCeEEEEeCC
Confidence 3788999999999998876 7899999999987631111 1245788999999984433458899999998
Q ss_pred CCCCcceeehhhhcccc-----------------ceeEEEEecCCCEEEEEcCCC-------------------------
Q 044557 215 PGNKKHSLVDVLERHNS-----------------GINALALSCDGSVLYSGACDR------------------------- 252 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~-----------------~v~~i~~s~~~~~l~s~~~d~------------------------- 252 (362)
++.... +. ..++.. ...+++|||||++|++++.|.
T Consensus 139 ~g~~~~-l~--~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 139 GDPPFQ-IT--FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp TSCCEE-CC--CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred CCCcEE-Ee--cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 765321 11 111211 125899999999999988663
Q ss_pred ---------cEEEEeccCCCCc--EEEE--EeecCccceeEEEEEeCC--eEEEee--CCC--cEEEee----CCCCcee
Q 044557 253 ---------SIIVWEKEEDDGN--ILVV--GALRGHTKSILCMAVVSD--LVCSGS--ADK--TIRIWR----GIDRNYT 309 (362)
Q Consensus 253 ---------~i~~wd~~~~~~~--~~~~--~~~~~h~~~v~~~~~~~~--~~~s~s--~D~--~i~~W~----~~~~~~~ 309 (362)
.|++||+..+... ..+. ..+.+|...+..++|+++ ++++.. .++ .|.+|+ .. +.+
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~--~g~ 293 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ--TWD 293 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS--SEE
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC--CCc
Confidence 6788988753210 0110 123467888899999876 445533 222 377777 43 344
Q ss_pred eeeEe----cCCCCcEE-----EEEeeecCCccCCCCCceEEEecCCCCc--EEEEecc
Q 044557 310 CLAVL----EGHRGPVK-----CLAAAIDNDRCDSSDTSYLVCSGSLDCD--IKVWQIS 357 (362)
Q Consensus 310 ~~~~l----~~h~~~v~-----~~~~~~~~~~~~~~~~~~~l~s~s~D~~--i~~W~~~ 357 (362)
+...+ .+|...+. .++|+|+++. -+++++..||. |.+|++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-------l~~~~~~~~g~~~l~~~~~~ 345 (719)
T 1z68_A 294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS-------YYKIFSDKDGYKHIHYIKDT 345 (719)
T ss_dssp CCGGGEEEEECSSSCSSSSSCCCCEECTTSSC-------EEEEEECTTSCEEEEEESSC
T ss_pred eEEEEecccccCCceEccccCCccEECCCCCe-------EEEEEEccCCceEEEEEECC
Confidence 44444 47777776 7788776542 12334555664 5555653
No 162
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=7.5e-13 Score=114.73 Aligned_cols=193 Identities=12% Similarity=0.172 Sum_probs=131.2
Q ss_pred CceeEEEE-ecCCCEEEEEEC-CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEE-EeCCCeEEEEeCCCCCCc
Q 044557 143 DAVSALAL-TKDETLLYSVSW-DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYT-GSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~-~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s-~~~dg~i~iw~~~~~~~~ 219 (362)
..+..+++ .++++++++... ++.|++|| .+++.+..+...+...+..+++.|+|.++. ...++.|.+|+.. +...
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 154 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVL 154 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEE
Confidence 45678888 467776666543 89999999 556666655444556789999999998554 4567899999864 3221
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec--CccceeEEEEEeCC--eEEEeeCC
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR--GHTKSILCMAVVSD--LVCSGSAD 295 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~--~~~s~s~D 295 (362)
..+. ...+...+..++++|+|..+++...++.|++|+... .. +..+. ++...+..++++++ ++++...+
T Consensus 155 ~~~~--~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~--~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~ 227 (286)
T 1q7f_A 155 HKFG--CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG---QY--LRQIGGEGITNYPIGVGINSNGEILIADNHN 227 (286)
T ss_dssp EEEE--CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC---CE--EEEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred EEeC--CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC---CE--EEEEccCCccCCCcEEEECCCCCEEEEeCCC
Confidence 1111 112344678999999999888888899999999742 21 22232 33456788888754 77777777
Q ss_pred C-cEEEeeCCCCceeeeeEecCCC--CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 296 K-TIRIWRGIDRNYTCLAVLEGHR--GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 296 ~-~i~~W~~~~~~~~~~~~l~~h~--~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ .|++|+.. ...+..+..+. ..+.++++.|++ .++++ +.|++|++|++.
T Consensus 228 ~~~i~~~~~~---g~~~~~~~~~~~~~~~~~i~~~~~g---------~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 228 NFNLTIFTQD---GQLISALESKVKHAQCFDVALMDDG---------SVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp SCEEEEECTT---SCEEEEEEESSCCSCEEEEEEETTT---------EEEEE-ETTTEEEEEECS
T ss_pred CEEEEEECCC---CCEEEEEcccCCCCcceeEEECCCC---------cEEEE-CCCCeEEEEEcc
Confidence 6 99999843 23344454443 347788887643 45666 569999999984
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=5.7e-14 Score=136.43 Aligned_cols=200 Identities=11% Similarity=0.012 Sum_probs=128.8
Q ss_pred cCceeEEEEecCCCEEEEEECC----------CcEEEEECCC------ceEEEeeeccCcccEEEEEEcCCCc-EEEEeC
Q 044557 142 VDAVSALALTKDETLLYSVSWD----------RTIKIWRTSD------FKCLESITNAHDDAINAVALSDDGD-VYTGSA 204 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d----------~~i~iwd~~~------~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~ 204 (362)
...+..++|+|||+.|+.++.| ..|++||+.+ ++.. .+...+...+..++|+|||+ ++.++.
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEEC
Confidence 3456789999999999998877 5899999987 5543 33313445778899999997 665554
Q ss_pred C--------CeEEEEeCC-CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCc--EEEEeccCCCCcEEEEEeec
Q 044557 205 D--------KKIKVWRRS-PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRS--IIVWEKEEDDGNILVVGALR 273 (362)
Q Consensus 205 d--------g~i~iw~~~-~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~ 273 (362)
+ ..|.+||+. ++. ..........|...+..++|+|||+++++++.|+. |..||...+ .... ...
T Consensus 208 ~~~~~~~~~~~i~~~d~~~~g~-~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~--~~~~--l~~ 282 (662)
T 3azo_A 208 DHPRMPWEGTELKTARVTEDGR-FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG--AATQ--LCR 282 (662)
T ss_dssp CTTCCTTTCEEEEEEEECTTSC-EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC--CEEE--SSC
T ss_pred CCCCCCCCCcEEEEEEECCCCc-ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC--ceee--ccc
Confidence 4 379999998 441 01112222345678899999999998888888884 555554332 2221 122
Q ss_pred Cccce--------eEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEE
Q 044557 274 GHTKS--------ILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVC 343 (362)
Q Consensus 274 ~h~~~--------v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 343 (362)
++... +.++++++ .++++++. +.++||....... .+..+..|...+..+. +++++ ..+++
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~-s~~~~-------~~~~~ 352 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG-ELVDAAGPWTEWAATL-TVSGT-------RAVGV 352 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-EEEECCSSCCEEEEEE-EEETT-------EEEEE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-cEEEecCCCCeEEEEE-ecCCC-------EEEEE
Confidence 22221 45677764 37888888 9999995422222 2567788888787662 44432 24555
Q ss_pred ecCCCCcEEEEecc
Q 044557 344 SGSLDCDIKVWQIS 357 (362)
Q Consensus 344 s~s~D~~i~~W~~~ 357 (362)
+++.+....+|.++
T Consensus 353 ~~~~~~~~~i~~~d 366 (662)
T 3azo_A 353 AASPRTAYEVVELD 366 (662)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EcCCCCCCEEEEEE
Confidence 66666666666543
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.64 E-value=4.6e-14 Score=127.10 Aligned_cols=202 Identities=11% Similarity=0.120 Sum_probs=129.6
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECC-CceEEEeeeccCcccEEEEEEcCCCc--EE-EEe-------------CCC
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTS-DFKCLESITNAHDDAINAVALSDDGD--VY-TGS-------------ADK 206 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~h~~~v~~v~~~~~~~--~~-s~~-------------~dg 206 (362)
.+..++++|++++|++++.+ .|.+|++. +++..........+.+..++|+|+|+ ++ ++. .+|
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 56789999999999999988 99999987 67654322211112244588999997 33 442 689
Q ss_pred eEEEEeCCC-CCCcceeehhhh-ccccceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeec--CccceeEE
Q 044557 207 KIKVWRRSP-GNKKHSLVDVLE-RHNSGINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALR--GHTKSILC 281 (362)
Q Consensus 207 ~i~iw~~~~-~~~~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~--~h~~~v~~ 281 (362)
.+.+|++.. +... ....... .+...+..++|+|||++|++++. ++.|++|++.. .+....+..+. .|...+..
T Consensus 120 ~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 120 YGNVFSVSETGKLE-KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-SGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp EEEEEEECTTCCEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TSCEEEEEEEECSSTTCCEEE
T ss_pred eEEEEccCCCCcCc-ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC-CCCEEEeeeEecCCCCCCCCE
Confidence 999999874 3321 1111111 23456889999999998887754 67999999972 22333333333 23556888
Q ss_pred EEEeCC--eEEEee-CCCcEEEeeCCCCceee------eeEe----cCCCC------cEEEEE-eeecCCccCCCCCceE
Q 044557 282 MAVVSD--LVCSGS-ADKTIRIWRGIDRNYTC------LAVL----EGHRG------PVKCLA-AAIDNDRCDSSDTSYL 341 (362)
Q Consensus 282 ~~~~~~--~~~s~s-~D~~i~~W~~~~~~~~~------~~~l----~~h~~------~v~~~~-~~~~~~~~~~~~~~~~ 341 (362)
++|+++ ++++++ .++.|.+|+......+. +..+ .+|.. .+..++ |+|+++ +
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~---------~ 268 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK---------Y 268 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---------E
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC---------E
Confidence 999865 566555 47899999754322221 2222 23333 588899 887653 3
Q ss_pred EEecCC-CC-----cEEEEecc
Q 044557 342 VCSGSL-DC-----DIKVWQIS 357 (362)
Q Consensus 342 l~s~s~-D~-----~i~~W~~~ 357 (362)
|++++. +. +|++|++.
T Consensus 269 l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 269 MFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEEC
T ss_pred EEEECCCCCCCCCCeEEEEEEC
Confidence 444432 22 89999985
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.62 E-value=6.4e-13 Score=120.16 Aligned_cols=288 Identities=12% Similarity=0.045 Sum_probs=168.4
Q ss_pred cceeeecccCccceee-----eEe--cCcEEEEecC-CCe--EEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC
Q 044557 9 HHCLTTLKGHNSYVSS-----LAL--AGKFLYTGSS-DNE--VRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA 78 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~-----l~~--~~~~l~t~s~-Dg~--i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 78 (362)
...+..|..|...... ..| +|++|+.++. ++. |.+||+.+...... . ..+...+..+.+++
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l--t-------~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL--T-------EGRGDNTFGGFLSP 90 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC--C-------CSSCBCSSSCEECT
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe--e-------eCCCCCccceEEcC
Confidence 4456677777766655 556 4888888877 774 77778765321110 0 01111222334554
Q ss_pred c--eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCcee--EEEEecCC
Q 044557 79 D--KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVS--ALALTKDE 154 (362)
Q Consensus 79 ~--~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~ 154 (362)
+ .|+.++.++.|.+||+..++.. .+... +...+. ...++|++
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~-----~~~~~-----------------------------~~~~~~~~~~~~~~dg 136 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEEN-----VVYQV-----------------------------PAEWVGYGTWVANSDC 136 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEE-----EEEEC-----------------------------CTTEEEEEEEEECTTS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcce-----eeeec-----------------------------hhhcccccceeECCCC
Confidence 4 5888888999999998765421 11111 111121 12347888
Q ss_pred CEEEEE----------------------ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeC------
Q 044557 155 TLLYSV----------------------SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSA------ 204 (362)
Q Consensus 155 ~~l~s~----------------------s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~------ 204 (362)
++++.. ..+..|.+||+.+++... +. .+...+..++|+| +|+ ++....
T Consensus 137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (388)
T 3pe7_A 137 TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-IL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLV 214 (388)
T ss_dssp SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EE-EESSCEEEEEEETTEEEEEEEEECSCTTTS
T ss_pred CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-ee-cCCccccccEECCCCCCEEEEEEecCCCCC
Confidence 887643 244789999999886543 32 3556788999999 887 554443
Q ss_pred CCeEEEEeCCCCCCcceeehhhhccc--cceeEEEEecCCCEEEEEcC-CC----cEEEEeccCCCCcEEEEEeecCccc
Q 044557 205 DKKIKVWRRSPGNKKHSLVDVLERHN--SGINALALSCDGSVLYSGAC-DR----SIIVWEKEEDDGNILVVGALRGHTK 277 (362)
Q Consensus 205 dg~i~iw~~~~~~~~~~~~~~~~~h~--~~v~~i~~s~~~~~l~s~~~-d~----~i~~wd~~~~~~~~~~~~~~~~h~~ 277 (362)
...|.+++...+.. ..+ ..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++. ..+..+.++..
T Consensus 215 ~~~l~~~d~~~~~~-~~l----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~ 287 (388)
T 3pe7_A 215 DARMWLINEDGTNM-RKV----KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--RQLTSMPACSH 287 (388)
T ss_dssp SCSEEEEETTSCCC-EES----CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--EEEEEECCEEE
T ss_pred cceEEEEeCCCCce-EEe----eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--EEEEcCCCcee
Confidence 23677788765432 112 1222 35778899999998765443 22 399999986542 23333443211
Q ss_pred ee-----EEEEEeCCeEEEe---------eCCCcEEEeeCCCCceeeeeEecCCCC-----------cEEEEEeeecCCc
Q 044557 278 SI-----LCMAVVSDLVCSG---------SADKTIRIWRGIDRNYTCLAVLEGHRG-----------PVKCLAAAIDNDR 332 (362)
Q Consensus 278 ~v-----~~~~~~~~~~~s~---------s~D~~i~~W~~~~~~~~~~~~l~~h~~-----------~v~~~~~~~~~~~ 332 (362)
.. ..+...+..++.. ..+..|.+|+..... +..+..|.. .+..++|+|+++
T Consensus 288 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~- 363 (388)
T 3pe7_A 288 LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT---QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDK- 363 (388)
T ss_dssp EEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE---EEEEEECCCCCCCBTTBSSTTCCCCEECTTSS-
T ss_pred eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc---eEEeccccCcccccccccccCCCCccCCCCCC-
Confidence 11 1233344444422 556789999965432 344555555 567778876653
Q ss_pred cCCCCCceEEEecCCCCcEEEEecccC
Q 044557 333 CDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 333 ~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
.++.++..++...||.+..+
T Consensus 364 -------~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 364 -------QILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp -------EEEEEECTTSSCEEEEEECC
T ss_pred -------EEEEEecCCCceeEEEEECC
Confidence 45556667888888887654
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.56 E-value=1.3e-11 Score=109.26 Aligned_cols=204 Identities=9% Similarity=0.045 Sum_probs=138.3
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCce-EEEeee--------ccCcccEEEEEEcC-CCcEEEEe--CCCeEE
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-CLESIT--------NAHDDAINAVALSD-DGDVYTGS--ADKKIK 209 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~--------~~h~~~v~~v~~~~-~~~~~s~~--~dg~i~ 209 (362)
......++++|+++++++...++.|++|+..... .+..+. ..+......++++| ++.++.+. .++.|+
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 3467889999999988888889999999986542 333332 23444688999999 78865544 589999
Q ss_pred EEeCCCCCCcceeehhh------hccccceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEE
Q 044557 210 VWRRSPGNKKHSLVDVL------ERHNSGINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCM 282 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~------~~h~~~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~ 282 (362)
+|+. ++.....+...- ..+-.....|+++|+ +..+++...+++|++|+..+++ ....-...++...+..+
T Consensus 170 ~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 170 QFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--FVREIKHASFGRNVFAI 246 (329)
T ss_dssp EECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--EEEEECCTTTTTCEEEE
T ss_pred EEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--EEEEEeccccCCCccee
Confidence 9994 343222111000 112234788999998 7777777889999999987432 22221223455667778
Q ss_pred EEeCCeEE--------EeeCCCcEEEeeCCCCceeeeeEe---cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcE
Q 044557 283 AVVSDLVC--------SGSADKTIRIWRGIDRNYTCLAVL---EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 283 ~~~~~~~~--------s~s~D~~i~~W~~~~~~~~~~~~l---~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i 351 (362)
++.+.+++ +.+.+..|++|+... ...+..+ .+|...+.++++++++ .++++.+.++.|
T Consensus 247 ~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~--g~~~~~~~~~~~~~~~p~~ia~~~dG---------~lyvad~~~~~I 315 (329)
T 3fvz_A 247 SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS--GEIIDVFKPVRKHFDMPHDIVASEDG---------TVYIGDAHTNTV 315 (329)
T ss_dssp EEETTEEEEEECCCCTTCSCCCCEEEEETTT--CCEEEEECCSSSCCSSEEEEEECTTS---------EEEEEESSSCCE
T ss_pred eecCCEEEEeCCCEEeccCCCcEEEEEEcCC--CeEEEEEcCCCCccCCeeEEEECCCC---------CEEEEECCCCEE
Confidence 77765332 233456899998543 4455565 4778889999997653 578888899999
Q ss_pred EEEecccC
Q 044557 352 KVWQISFP 359 (362)
Q Consensus 352 ~~W~~~~~ 359 (362)
++|++...
T Consensus 316 ~~~~~~~~ 323 (329)
T 3fvz_A 316 WKFTLTEK 323 (329)
T ss_dssp EEEEEEEC
T ss_pred EEEeCCcc
Confidence 99998643
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.51 E-value=6.9e-12 Score=121.73 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=103.5
Q ss_pred CceeEEEEecCCCEEEEEECCC--------cEEEEECC-Cc--eEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC--eE
Q 044557 143 DAVSALALTKDETLLYSVSWDR--------TIKIWRTS-DF--KCLESITNAHDDAINAVALSDDGD-VYTGSADK--KI 208 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~--------~i~iwd~~-~~--~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg--~i 208 (362)
..+..++|+|||++|+.++.++ .|.+||+. ++ .....+...|...+..++|+|+|+ ++++..++ .|
T Consensus 188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l 267 (662)
T 3azo_A 188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNL 267 (662)
T ss_dssp SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEE
T ss_pred CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEE
Confidence 3456678999999999887653 79999998 56 233344445567899999999998 45666778 56
Q ss_pred EEEeCCCCCCcceeehhhhccccc--------eeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeE
Q 044557 209 KVWRRSPGNKKHSLVDVLERHNSG--------INALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSIL 280 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~~~--------v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~ 280 (362)
.+||+.++... .+ ...+... +..++|+|+++.+++++. +.+++|.+....+. +..+..|...+.
T Consensus 268 ~~~~~~~~~~~-~l---~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~---~~~l~~~~~~~~ 339 (662)
T 3azo_A 268 HRVDPATGAAT-QL---CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE---LVDAAGPWTEWA 339 (662)
T ss_dssp EEECTTTCCEE-ES---SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE---EEECCSSCCEEE
T ss_pred EEEECCCCcee-ec---ccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc---EEEecCCCCeEE
Confidence 66665444321 11 1112111 567899999999999999 99999955432232 345666777777
Q ss_pred EE-EEeCC--eEEEeeCCCcEEEeeC
Q 044557 281 CM-AVVSD--LVCSGSADKTIRIWRG 303 (362)
Q Consensus 281 ~~-~~~~~--~~~s~s~D~~i~~W~~ 303 (362)
.+ +++++ .+++++.+....+|..
T Consensus 340 ~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 340 ATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 77 77776 4556677766677753
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.50 E-value=2.3e-12 Score=126.78 Aligned_cols=200 Identities=12% Similarity=0.058 Sum_probs=123.5
Q ss_pred eEEEEecCCCEEEEEECC---------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCC
Q 044557 146 SALALTKDETLLYSVSWD---------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d---------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~ 216 (362)
..++|+|||++|+.++.+ +.+.+||+.+++... +. .|...+...+|||+|+.++...|+.|.+|++.++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~-~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE-RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SS-CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cc-cCCCcceeeEECCCCCEEEEEECCeEEEEECCCC
Confidence 457899999999998876 556799999988643 33 4667899999999998444446899999998876
Q ss_pred CCcceeehhhhcccc-----------------ceeEEEEecCCCEEEEEcCCC---------------------------
Q 044557 217 NKKHSLVDVLERHNS-----------------GINALALSCDGSVLYSGACDR--------------------------- 252 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~-----------------~v~~i~~s~~~~~l~s~~~d~--------------------------- 252 (362)
... .+. ..++.. ....++|||||+.|+.++.|.
T Consensus 143 ~~~-~lt--~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp 219 (740)
T 4a5s_A 143 PSY-RIT--WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP 219 (740)
T ss_dssp CCE-ECC--SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred ceE-EEc--CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence 532 111 111211 123589999999999886443
Q ss_pred ---------cEEEEeccC---CCC-cEEEEEe---ecCccceeEEEEEeCC--eEEEe----eCCCcEEEeeCCCCc--e
Q 044557 253 ---------SIIVWEKEE---DDG-NILVVGA---LRGHTKSILCMAVVSD--LVCSG----SADKTIRIWRGIDRN--Y 308 (362)
Q Consensus 253 ---------~i~~wd~~~---~~~-~~~~~~~---~~~h~~~v~~~~~~~~--~~~s~----s~D~~i~~W~~~~~~--~ 308 (362)
+|++||+.+ +.. ....+.. +.+|...+..++|+++ .++.. +.+..|++|+..... .
T Consensus 220 ~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~ 299 (740)
T 4a5s_A 220 KAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW 299 (740)
T ss_dssp BTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE
T ss_pred CCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc
Confidence 366777765 321 1111111 1136777888888865 33332 234468999864432 1
Q ss_pred eee--eEe--cCCCCcEE-----EEEeeecCCccCCCCCceEE-EecCCCC--cEEEEeccc
Q 044557 309 TCL--AVL--EGHRGPVK-----CLAAAIDNDRCDSSDTSYLV-CSGSLDC--DIKVWQISF 358 (362)
Q Consensus 309 ~~~--~~l--~~h~~~v~-----~~~~~~~~~~~~~~~~~~~l-~s~s~D~--~i~~W~~~~ 358 (362)
.|. ..+ .+|...|. ..+|+|+++ .++ .....|| .|.+|++..
T Consensus 300 ~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~--------~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 300 NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN--------SFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EECGGGCEEEECSSSCSSSSSCCCCEECTTSS--------EEEEEEECTTSCEEEEEEETTC
T ss_pred ceeEEEEeeeccCCceEccCcCCCceEcCCCC--------EEEEEEEcCCCceEEEEEECCC
Confidence 122 223 56766654 567776653 233 2333444 477777653
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.49 E-value=4.3e-11 Score=107.43 Aligned_cols=263 Identities=13% Similarity=0.113 Sum_probs=158.3
Q ss_pred CCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe----------cCCcEEEEecCCCCCCccc
Q 044557 37 SDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH----------QDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 37 ~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~----------~dg~i~~w~~~~~~~~~~~ 104 (362)
.|++|.+||..+.. .... +..+..+ .+.++++ .+++++ .+++|.+||....+..
T Consensus 29 ~d~~v~v~D~~t~~--~~~~-------i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~--- 94 (361)
T 2oiz_A 29 TESRVHVYDYTNGK--FLGM-------VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE--- 94 (361)
T ss_dssp GGCEEEEEETTTCC--EEEE-------EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE---
T ss_pred ccCeEEEEECCCCe--EEEE-------ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE---
Confidence 47899999976543 1111 1122333 6667655 588776 3678999998654311
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC--CCcEEEEECCCceEEEe-ee
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW--DRTIKIWRTSDFKCLES-IT 181 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~-~~ 181 (362)
..+...+. . ..+......++++||+++|+++.. ++.|.+||+.+++.+.. +.
T Consensus 95 -~~i~~~~~---~---------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 95 -KEISLPPK---R---------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp -EEEEECTT---B---------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred -EEEEcCcc---c---------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 01110000 0 001223456889999999998874 58999999999988776 53
Q ss_pred ccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeEEEEecCCCEEEEEcCCCcEEE
Q 044557 182 NAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINALALSCDGSVLYSGACDRSIIV 256 (362)
Q Consensus 182 ~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~ 256 (362)
. . ....+.+.|++ .+++.+.||.+.+|+........... ..+.....++ .+.++|++..++..+.++.|.+
T Consensus 150 ~--~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v 225 (361)
T 2oiz_A 150 A--A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYS 225 (361)
T ss_dssp G--T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEE
T ss_pred C--C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEE
Confidence 2 2 22335677766 37888999999999886532211000 1111122222 2344678888888889999999
Q ss_pred EeccCCCCcEEEEEeec--C----cc----ceeEEEEEeC--Ce-EEEee----------CCCcEEEeeCCCCceeeeeE
Q 044557 257 WEKEEDDGNILVVGALR--G----HT----KSILCMAVVS--DL-VCSGS----------ADKTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 257 wd~~~~~~~~~~~~~~~--~----h~----~~v~~~~~~~--~~-~~s~s----------~D~~i~~W~~~~~~~~~~~~ 313 (362)
+|+...... ....+. . +. ....-+++++ .. +++.+ ..+.|.+||.. +.+.+++
T Consensus 226 ~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~--t~~~v~~ 301 (361)
T 2oiz_A 226 ADFSGDEVK--VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK--TKQRVAR 301 (361)
T ss_dssp EECSSSSCE--EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT--TTEEEEE
T ss_pred EEecCCCce--ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC--CCcEEEE
Confidence 998653322 222111 0 00 1111245554 33 34333 13479999954 4567888
Q ss_pred ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 314 LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 314 l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
+..+. +.+++|+|+++ +|++++. ++|.+||.+.
T Consensus 302 i~~~~--p~~ia~spdg~---------~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 302 IPGRD--ALSMTIDQQRN---------LMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp EECTT--CCEEEEETTTT---------EEEEECS-SCEEEEECSS
T ss_pred EecCC--eeEEEECCCCC---------EEEEeCC-CeEEEEECCC
Confidence 88777 99999998754 4666665 9999999864
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.48 E-value=5.7e-11 Score=105.11 Aligned_cols=255 Identities=15% Similarity=0.061 Sum_probs=153.7
Q ss_pred cceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeE-EEecCCcEEEEec
Q 044557 20 SYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLF-SAHQDHKIRVWKI 95 (362)
Q Consensus 20 ~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~-s~~~dg~i~~w~~ 95 (362)
..|.++.++ +..++..+.++.++.|.... ...+ ..+.....++.+.++ .|+ ++..++.|.+|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~ 73 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAEP-----WLEI-------SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINP 73 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECEE-----EEEE-------ESSCCCEEEEEECTTSCEEEEETTTCEEEEECT
T ss_pred cccceeeecCCccceeEEeecccCcccccce-----eEEE-------eccCccccCcEECCCCCEEEEECCCCEEEEEeC
Confidence 346777774 44566667889999993211 1111 112223455666544 354 5667889999987
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC----CcEEEEEC
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD----RTIKIWRT 171 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d----~~i~iwd~ 171 (362)
+.+... .+ ...+...+.+++++|+++++++...+ +.|.+||.
T Consensus 74 ~~~~~~-----~~-----------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 74 ETKEIK-----RP-----------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp TTCCEE-----EE-----------------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred CCCcEE-----EE-----------------------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 643210 00 00123568899999999988877766 68999998
Q ss_pred CCceEEEeee-ccCcccEEEEEEcCCCcEEEEeCC-------CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCC
Q 044557 172 SDFKCLESIT-NAHDDAINAVALSDDGDVYTGSAD-------KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGS 243 (362)
Q Consensus 172 ~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~s~~~d-------g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 243 (362)
++++....+. ..+...+.+++++|+|.++.++.. +.|..++..++.. ..+ ..+...+..++|+|+|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~----~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPI----IQNISVANGIALSTDEK 194 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEE----EEEESSEEEEEECTTSS
T ss_pred CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE-EEe----ecCCCcccceEECCCCC
Confidence 8766443222 123456899999999986655542 4555555443321 111 12233577899999998
Q ss_pred EEE-EEcCCCcEEEEeccCCCCcEEE-----EEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 244 VLY-SGACDRSIIVWEKEEDDGNILV-----VGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 244 ~l~-s~~~d~~i~~wd~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
.|+ +.+.++.|.+|+.......... ...+.++ ..+..+++++ .+.++...++.|.+|+.. ...+..+.
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~---g~~~~~~~ 270 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR---GYPIGQIL 270 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT---SCEEEEEE
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC---CCEEEEEE
Confidence 665 4556889999998642222211 1112222 3567788864 367777778999999853 23344443
Q ss_pred CC------CCcEEEEEeeec
Q 044557 316 GH------RGPVKCLAAAID 329 (362)
Q Consensus 316 ~h------~~~v~~~~~~~~ 329 (362)
.+ ...+.+++|+++
T Consensus 271 ~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 271 IPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTGGGTCSCBCCEEEECTT
T ss_pred cCCCccccccCcceEEECCC
Confidence 33 236888888654
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.46 E-value=3.6e-11 Score=104.00 Aligned_cols=198 Identities=10% Similarity=0.136 Sum_probs=136.7
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec-----cCcccEEEEEE-cCCCcEEEEeC--CCeEEEEe
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN-----AHDDAINAVAL-SDDGDVYTGSA--DKKIKVWR 212 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----~h~~~v~~v~~-~~~~~~~s~~~--dg~i~iw~ 212 (362)
+...+.+++++++++++++.+.++.|.+||.. ++.+..+.. .+...+..+++ .+++.++.+.. ++.|.+|+
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 44567899999999988888889999999987 444444421 23456889999 57888666553 89999999
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEE
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVC 290 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~ 290 (362)
. ++.....+ ...+...+..++++|+|+.+++...++.|++||... .........++...+..++++++ +++
T Consensus 107 ~-~g~~~~~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 107 Q-YGQFVRKF---GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp T-TSCEEEEE---CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred C-CCcEEEEe---cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC---CEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 4 34322111 112335678999999999888888889999999642 22111111244456788888754 677
Q ss_pred EeeCCCcEEEeeCCCCceeeeeEec--CCCCcEEEEEeeecCCccCCCCCceEEEecCCCC-cEEEEeccc
Q 044557 291 SGSADKTIRIWRGIDRNYTCLAVLE--GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC-DIKVWQISF 358 (362)
Q Consensus 291 s~s~D~~i~~W~~~~~~~~~~~~l~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~-~i~~W~~~~ 358 (362)
+.+.++.|++|+... ..+..+. ++...+..+++++++ .++++.+.++ .|++|+...
T Consensus 180 ~~~~~~~i~~~~~~g---~~~~~~~~~g~~~~p~~i~~d~~G---------~l~v~~~~~~~~i~~~~~~g 238 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNG---------EILIADNHNNFNLTIFTQDG 238 (286)
T ss_dssp EEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTC---------CEEEEECSSSCEEEEECTTS
T ss_pred EECCCCEEEEEcCCC---CEEEEEccCCccCCCcEEEECCCC---------CEEEEeCCCCEEEEEECCCC
Confidence 778899999999532 3344453 334678889886543 4677777775 999999653
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.46 E-value=2.5e-11 Score=107.54 Aligned_cols=209 Identities=15% Similarity=0.108 Sum_probs=139.6
Q ss_pred cCceeEEEEecCCCEEEEEECC------------------------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCC
Q 044557 142 VDAVSALALTKDETLLYSVSWD------------------------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDG 197 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d------------------------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~ 197 (362)
.+.+.+++++|+++++++.+.+ ++|.+||..+++.+..+...+......++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3578999999999999888877 4799999988887766654555678999999999
Q ss_pred cE-EEEeCCCeEEEEeCCCCC-Ccceeehhh-----hccccceeEEEEec-CCCEEEEEc-CCCcEEEEeccCCCCcEEE
Q 044557 198 DV-YTGSADKKIKVWRRSPGN-KKHSLVDVL-----ERHNSGINALALSC-DGSVLYSGA-CDRSIIVWEKEEDDGNILV 268 (362)
Q Consensus 198 ~~-~s~~~dg~i~iw~~~~~~-~~~~~~~~~-----~~h~~~v~~i~~s~-~~~~l~s~~-~d~~i~~wd~~~~~~~~~~ 268 (362)
.+ ++...++.|++|+..... ....+.... ..+......|+++| +|..+++.+ .++.|++|+.. +. ....
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~-~~~~ 180 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GK-FVTQ 180 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SC-EEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CC-EEEE
Confidence 85 456678999999975431 111111000 23344678999999 788888886 69999999943 22 1111
Q ss_pred EEee-------cCccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCceeeeeEe--cCCCCcEEEEEeeecCCccCCC
Q 044557 269 VGAL-------RGHTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRNYTCLAVL--EGHRGPVKCLAAAIDNDRCDSS 336 (362)
Q Consensus 269 ~~~~-------~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~~~~~~~l--~~h~~~v~~~~~~~~~~~~~~~ 336 (362)
+... .++......++++++ ++++.+.++.|++|+.. .++.+..+ .++...+.+++++| +.. ..
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~p-g~~--~~ 255 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD--TKEFVREIKHASFGRNVFAISYIP-GFL--FA 255 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT--TCCEEEEECCTTTTTCEEEEEEET-TEE--EE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC--CCcEEEEEeccccCCCcceeeecC-CEE--EE
Confidence 1111 123334678888643 67888889999999964 23445555 45677888898887 211 01
Q ss_pred CCceEEEecCCCCcEEEEecc
Q 044557 337 DTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 337 ~~~~~l~s~s~D~~i~~W~~~ 357 (362)
..+.+.++.+.+.+|++|++.
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFS 276 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETT
T ss_pred eCCCEEeccCCCcEEEEEEcC
Confidence 112234455566688888863
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.46 E-value=5.8e-11 Score=105.57 Aligned_cols=181 Identities=10% Similarity=0.120 Sum_probs=115.7
Q ss_pred eeEEEEecCCCEEEEEECC---------------------------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCC
Q 044557 145 VSALALTKDETLLYSVSWD---------------------------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDG 197 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d---------------------------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~ 197 (362)
+..++|+||++.|+.++.+ ..|.+||+.+++.+..+.. . .+..++|+|+|
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg 182 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK 182 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe
Confidence 7889999999988887642 5799999998876444543 2 67789999999
Q ss_pred cEEEEeCC------C-eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC--------cEEEEeccCC
Q 044557 198 DVYTGSAD------K-KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR--------SIIVWEKEED 262 (362)
Q Consensus 198 ~~~s~~~d------g-~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~--------~i~~wd~~~~ 262 (362)
.++++..+ . ...+|.+.++. ...+ ..+ ..+..+ +|||++|+.++.++ .|.+|| ++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l----~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~ 252 (347)
T 2gop_A 183 IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKM----FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK 252 (347)
T ss_dssp EEEEEECCCSSCCSSCCEEEEEEETTE-EEEE----EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS
T ss_pred EEEEEecccccccccccccEEEeCCCc-eEEe----ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC
Confidence 33344443 2 44555444322 1112 223 344443 99999988777543 577777 22
Q ss_pred CCcEEEEEeecCccceeEE-EEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceE
Q 044557 263 DGNILVVGALRGHTKSILC-MAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYL 341 (362)
Q Consensus 263 ~~~~~~~~~~~~h~~~v~~-~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~ 341 (362)
.. .....+|...+.. +.|+..++++++.|+.++|| ... ... ..+..+...|.++++++ .+
T Consensus 253 --~~--~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~--g~~-~~~~~~~~~v~~~~~s~-----------~~ 313 (347)
T 2gop_A 253 --EV--MGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWD--GEI-KPIAKGRHWIMGFDVDE-----------IV 313 (347)
T ss_dssp --CE--EESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EES--SSE-EEEECSSSEEEEEEESS-----------SE
T ss_pred --ce--EeccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcC--Cce-EEEecCCCeEEeeeeeC-----------cE
Confidence 22 2223455666765 77762278899999999999 752 333 33445677888888864 24
Q ss_pred EEecCCCCcE-EEEecc
Q 044557 342 VCSGSLDCDI-KVWQIS 357 (362)
Q Consensus 342 l~s~s~D~~i-~~W~~~ 357 (362)
+++++.++.. +||.++
T Consensus 314 ~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 314 VYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEECSSSCCEEEEES
T ss_pred EEEEcCCCChHHheEeC
Confidence 5666666654 777653
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.45 E-value=4.4e-12 Score=124.80 Aligned_cols=198 Identities=10% Similarity=0.006 Sum_probs=128.5
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcc-----cEEEEEEcCCCc-EEEEeCC---------CeE
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDD-----AINAVALSDDGD-VYTGSAD---------KKI 208 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~-----~v~~v~~~~~~~-~~s~~~d---------g~i 208 (362)
...++.|+||+++++++ |+.|++||+.++++...+. .|.. ....++|||||+ ++.++.+ +.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 34578999999999886 9999999999988765443 4432 224478999998 5665554 567
Q ss_pred EEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcccee---------
Q 044557 209 KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSI--------- 279 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v--------- 279 (362)
.+||+.++... .+..|...+...+|||||+.|+.+ .|+.|++|++..+.. . .+ +..++...+
T Consensus 95 ~~~d~~~~~~~-----~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~-~-~l-t~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 95 DIYDLNKRQLI-----TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS-Y-RI-TWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp EEEETTTTEEC-----CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC-E-EC-CSCCBTTTEEESBCCHHH
T ss_pred EEEECCCCcEE-----EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCce-E-EE-cCCCCccceecCcccccc
Confidence 79999876422 234567789999999999999888 478999999876442 1 11 122332222
Q ss_pred --------EEEEEeCC--eEEEeeCCC------------------------------------cEEEeeCCC---Cceee
Q 044557 280 --------LCMAVVSD--LVCSGSADK------------------------------------TIRIWRGID---RNYTC 310 (362)
Q Consensus 280 --------~~~~~~~~--~~~s~s~D~------------------------------------~i~~W~~~~---~~~~~ 310 (362)
..+.|+++ .|+.++.|. .|++|+... .....
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 23667765 677665433 366677543 21001
Q ss_pred eeEec------CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 311 LAVLE------GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 311 ~~~l~------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...+. +|...+..++|+|+++... ..+..++.+..|++||+..
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~-----~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISL-----QWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEE-----EEEESSTTEEEEEEEEEET
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEE-----EEeCCCCCEEEEEEEECCC
Confidence 12232 4888899999998754100 0122234556799999753
No 175
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.44 E-value=7.7e-11 Score=104.32 Aligned_cols=265 Identities=12% Similarity=0.038 Sum_probs=159.5
Q ss_pred cCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEec-CCcEEEEecCCCCCCcccceeeeeccCC
Q 044557 36 SSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQ-DHKIRVWKINNQEPDHQKYTRLATLPTL 114 (362)
Q Consensus 36 s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 114 (362)
+.+++|.++|.++.+.........+.. ..+ .....+.+.+++++.+.. ++.|.+||..+.+.. ..+
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~--~lg-~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~-------~~i--- 80 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGF--KLG-DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEV-------GRI--- 80 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSS--CCB-SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEE-------EEE---
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCc--ccC-ccceEEEEECCEEEEEEcCCCEEEEEECcccEEE-------EEc---
Confidence 348999999987643211100000000 001 123455566777666654 689999998764421 000
Q ss_pred CchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCc----ccEEE
Q 044557 115 GDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHD----DAINA 190 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~----~~v~~ 190 (362)
........++++++++++++...++.|.+||..+++....+..+.. .....
T Consensus 81 -------------------------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~ 135 (328)
T 3dsm_A 81 -------------------------TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQ 135 (328)
T ss_dssp -------------------------ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCC
T ss_pred -------------------------CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcce
Confidence 1123457888988886555544899999999999987766653321 13456
Q ss_pred EEEcCCCcEEEEe--CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC----------CcEEEEe
Q 044557 191 VALSDDGDVYTGS--ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD----------RSIIVWE 258 (362)
Q Consensus 191 v~~~~~~~~~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d----------~~i~~wd 258 (362)
+++ .+++++.+. .++.|.++|..++.....+ .. ......++++|+|++++++..+ +.|.++|
T Consensus 136 i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i----~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id 209 (328)
T 3dsm_A 136 MVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL----TI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID 209 (328)
T ss_dssp EEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE----EC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred EEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE----Ec-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence 777 566666555 4899999999876533222 11 2234678899999977776655 7899999
Q ss_pred ccCCCCcEEEEEeecCc-cceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCC
Q 044557 259 KEEDDGNILVVGALRGH-TKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDS 335 (362)
Q Consensus 259 ~~~~~~~~~~~~~~~~h-~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~ 335 (362)
..+.+ +...+.-. ......+++++ +.+..+.. .|.+||....+......+..+.....+++++|++
T Consensus 210 ~~t~~----v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~----- 278 (328)
T 3dsm_A 210 AETFT----VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN----- 278 (328)
T ss_dssp TTTTE----EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT-----
T ss_pred CCCCe----EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC-----
Confidence 87532 22222211 23567888885 35544443 8889986433221111122224568888887643
Q ss_pred CCCceEEEec----CCCCcEEEEeccc
Q 044557 336 SDTSYLVCSG----SLDCDIKVWQISF 358 (362)
Q Consensus 336 ~~~~~~l~s~----s~D~~i~~W~~~~ 358 (362)
+++.++. ..+++|.+||...
T Consensus 279 ---g~lyva~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 279 ---GEVYVADAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp ---CCEEEEECTTSSSEEEEEEECTTC
T ss_pred ---CeEEEEcccccccCCEEEEECCCC
Confidence 3456666 6789999999863
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.44 E-value=1.6e-10 Score=100.60 Aligned_cols=172 Identities=14% Similarity=0.066 Sum_probs=111.7
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec---cCcccEEEEEEcCCCcEEEE-----e-----------
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN---AHDDAINAVALSDDGDVYTG-----S----------- 203 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~s~-----~----------- 203 (362)
..+.+++++|+++++++...++.|.+||..+++....... .....+..++++|+|.++.+ +
T Consensus 69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~ 148 (296)
T 3e5z_A 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEM 148 (296)
T ss_dssp SSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCC
T ss_pred CCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccc
Confidence 4567899999999888777789999999977764332211 11124567999999986553 2
Q ss_pred --CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcE-EEEEeecCccceeE
Q 044557 204 --ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNI-LVVGALRGHTKSIL 280 (362)
Q Consensus 204 --~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~h~~~v~ 280 (362)
..+.|..++.. +. ... +..+......++|+|||+.|++.+.++.|.+|++... +.. .....+..+...+.
T Consensus 149 ~~~~~~l~~~~~~-g~-~~~----~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~p~ 221 (296)
T 3e5z_A 149 ELPGRWVFRLAPD-GT-LSA----PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR-GETEYQGVHFTVEPGKTD 221 (296)
T ss_dssp CSSSCEEEEECTT-SC-EEE----EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSS-SCEEEEEEEECCSSSCCC
T ss_pred cCCCcEEEEECCC-CC-EEE----eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCC-CcCcCCCeEeeCCCCCCC
Confidence 13455555543 22 111 1234455688999999999988888999999998632 222 11111223445566
Q ss_pred EEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 281 CMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 281 ~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.++++++ +.++. ++.|.+|+.. .+.+..+..+.. +.+++|.
T Consensus 222 ~i~~d~~G~l~v~~--~~~v~~~~~~---g~~~~~~~~~~~-~~~~~f~ 264 (296)
T 3e5z_A 222 GLRVDAGGLIWASA--GDGVHVLTPD---GDELGRVLTPQT-TSNLCFG 264 (296)
T ss_dssp SEEEBTTSCEEEEE--TTEEEEECTT---SCEEEEEECSSC-CCEEEEE
T ss_pred eEEECCCCCEEEEc--CCeEEEECCC---CCEEEEEECCCC-ceeEEEE
Confidence 7777654 44444 8899999853 345666777777 8889885
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.43 E-value=8.4e-12 Score=112.91 Aligned_cols=301 Identities=10% Similarity=-0.016 Sum_probs=160.9
Q ss_pred ceeeecccCccc-----eeeeEe--cCcEEEEecC-C--CeEEEeecCCCCcccceeeeccceeEEeecce-eEEEEEcC
Q 044557 10 HCLTTLKGHNSY-----VSSLAL--AGKFLYTGSS-D--NEVRSWDCNTFSSELDQEFLSNNNIVAVGKGA-VKSLVVLA 78 (362)
Q Consensus 10 ~~~~tl~gH~~~-----V~~l~~--~~~~l~t~s~-D--g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~ 78 (362)
+.+..|..+... +.++.| +|++|+.... + ..|.+||+.+..... .. .+... ...+.+++
T Consensus 21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~---l~-------~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ---LT-------EGKGDNTFGGFIST 90 (396)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE---CC-------CSSCBCTTTCEECT
T ss_pred cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE---ee-------cCCCCccccceECC
Confidence 345556555433 677777 4777766543 3 467888876532110 00 01111 11134444
Q ss_pred --ceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCE
Q 044557 79 --DKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETL 156 (362)
Q Consensus 79 --~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 156 (362)
+.|+.++.++.|.+|++..++.. .+...+.. +.+.+...+.......... ....+.++|+++.
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~-----~~~~~~~~-------~~~~g~~l~~~~~~~~~~~---~~~~~~~spdg~~ 155 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQ-----VIYTVDEE-------WKGYGTWVANSDCTKLVGI---EILKRDWQPLTSW 155 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEE-----EEEECCTT-------EEEEEEEEECTTSSEEEEE---EEEGGGCCCCCSH
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcE-----EEEecccc-------cCCCCCEEEeccCCccccc---cccccccCCCCcc
Confidence 35878888889999998765421 11111100 0000000000000000000 0011346788887
Q ss_pred EEEE-----ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCc-EEEEeCC------CeEEEEeCCCCCCcceee
Q 044557 157 LYSV-----SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGD-VYTGSAD------KKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 157 l~s~-----s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~-~~s~~~d------g~i~iw~~~~~~~~~~~~ 223 (362)
++.+ ..+..|.+||+.+++..... .+...+..+.|+| ++. ++..+.+ ..|.+|++..+.. ..+.
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~ 232 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIK 232 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESS
T ss_pred eeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEee
Confidence 6654 45678999999887754433 3556788999999 675 5554433 4688888765432 1111
Q ss_pred hhhhcc-ccceeEEEEecCCCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEee-
Q 044557 224 DVLERH-NSGINALALSCDGSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSGS- 293 (362)
Q Consensus 224 ~~~~~h-~~~v~~i~~s~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~s- 293 (362)
... ...+..++|+|||++|+.++.+ +.|++||+.++. ...+....++ . ..|++ .+++.++
T Consensus 233 ---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~----~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 233 ---EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE--NEEVMVMPPC----S-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp ---CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC--EEEEEECCSE----E-EEEECSSSSEEEEEEC
T ss_pred ---ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC--eEEeeeCCCC----C-CCccCCCCceEEEecC
Confidence 111 2357889999999988777554 449999987643 2223333332 1 55554 3666543
Q ss_pred ---------------CCCcEEEeeCCCCceeeeeEecCCCC-----------cEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 294 ---------------ADKTIRIWRGIDRNYTCLAVLEGHRG-----------PVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 294 ---------------~D~~i~~W~~~~~~~~~~~~l~~h~~-----------~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
.+..|.+|+..... ...+..|.. .+..++|+|++. ++++++..
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------~l~~~s~~ 371 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKS---AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDD--------GVLFTSDF 371 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTB---CCEEEECCCCCCCBTTBSSTTCCCCEECTTSS--------EEEEEECT
T ss_pred CcceeeccccccccCCCCcEEEEecccCc---eEEccCCCCccccccccccCCCCCceEccCCC--------eEEEEecC
Confidence 34779999864332 233444443 144456665432 34445555
Q ss_pred CCcEEEEecccC
Q 044557 348 DCDIKVWQISFP 359 (362)
Q Consensus 348 D~~i~~W~~~~~ 359 (362)
++...||.+...
T Consensus 372 ~~~~~l~~~~~~ 383 (396)
T 3c5m_A 372 EGVPAIYIADVP 383 (396)
T ss_dssp TSSCEEEEEECC
T ss_pred CCCceEEEEEEc
Confidence 777778876543
No 178
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.39 E-value=8.5e-11 Score=106.15 Aligned_cols=195 Identities=11% Similarity=-0.021 Sum_probs=120.3
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEE--EcCCCcEEEE--------------------
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVA--LSDDGDVYTG-------------------- 202 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~--~~~~~~~~s~-------------------- 202 (362)
+....|+||++.|+.++.++.|++||+.+++...... .+...+.... ++|++.++.+
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ-VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEF 161 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred ccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee-chhhcccccceeECCCCCeeccccccCcccccccccchhhhh
Confidence 3356799999999999999999999999887654433 3444444333 4888875542
Q ss_pred ---eCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-CCCEEEEEcCC------CcEEEEeccCCCCcEEEEEee
Q 044557 203 ---SADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACD------RSIIVWEKEEDDGNILVVGAL 272 (362)
Q Consensus 203 ---~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~ 272 (362)
..+..|.+||+.++... . +..+...+..++|+| ||+.|+..+.+ ..|.++|...... . .+
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~-~----l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~--~---~l 231 (388)
T 3pe7_A 162 YFTKPCCRLMRVDLKTGEST-V----ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM--R---KV 231 (388)
T ss_dssp GGGCCCEEEEEEETTTCCEE-E----EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC--E---ES
T ss_pred hccCCcceEEEEECCCCceE-E----eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce--E---Ee
Confidence 24478999999876422 2 223556788999999 99998877653 3677777654321 1 22
Q ss_pred cCcc--ceeEEEEEeCC--eEEEeeC--CC---cEEEeeCCCCceeeeeEecCCCCcE---EEEEeeecCCccCCCCCce
Q 044557 273 RGHT--KSILCMAVVSD--LVCSGSA--DK---TIRIWRGIDRNYTCLAVLEGHRGPV---KCLAAAIDNDRCDSSDTSY 340 (362)
Q Consensus 273 ~~h~--~~v~~~~~~~~--~~~s~s~--D~---~i~~W~~~~~~~~~~~~l~~h~~~v---~~~~~~~~~~~~~~~~~~~ 340 (362)
..+. ..+....|+++ .|+..+. ++ .|.+|+........+..+.++.... ...+|+|++..
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~-------- 303 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSD-------- 303 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECC--------
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCc--------
Confidence 2333 34667788765 4443332 22 3999997554444454444421111 11257776543
Q ss_pred EEEe--------cCCCCcEEEEeccc
Q 044557 341 LVCS--------GSLDCDIKVWQISF 358 (362)
Q Consensus 341 ~l~s--------~s~D~~i~~W~~~~ 358 (362)
++++ ++.+..|++||+..
T Consensus 304 l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 304 APVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp C------------CCCCEEEEEETTT
T ss_pred ceeEeeeccccccCCCCEEEEEeccC
Confidence 2222 25567899999863
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.39 E-value=5.2e-11 Score=116.30 Aligned_cols=195 Identities=12% Similarity=0.019 Sum_probs=120.3
Q ss_pred eEEEEecCCCEEEEEECCCc-------------EEEEECCCce----EEEeeeccCcccEEEEEEcCCCc-EEEEeCCC-
Q 044557 146 SALALTKDETLLYSVSWDRT-------------IKIWRTSDFK----CLESITNAHDDAINAVALSDDGD-VYTGSADK- 206 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~-------------i~iwd~~~~~----~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg- 206 (362)
..++|+||++.|+.++.|.. |++|++.++. .+... ..|...+..+.|+|+|+ ++.++.++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~ 249 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDPTTFLQSDLSRDGKYLFVYILRGW 249 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCCEEEEEEEECCCCCEEEEEEeCCC
Confidence 46789999999999998876 9999998765 22211 23445788999999997 66555444
Q ss_pred ---eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc---CCCcEEEEeccCCCC-cEEEEEeecCc-cce
Q 044557 207 ---KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA---CDRSIIVWEKEEDDG-NILVVGALRGH-TKS 278 (362)
Q Consensus 207 ---~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~---~d~~i~~wd~~~~~~-~~~~~~~~~~h-~~~ 278 (362)
.|.+|+..++. ... +..+...+....+ ++|..++... .++.|.+||+.+... ....+ +..+ ...
T Consensus 250 ~~~~l~~~~~~~~~-~~~----l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~~~~ 321 (695)
T 2bkl_A 250 SENDVYWKRPGEKD-FRL----LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI--VPEDSSAS 321 (695)
T ss_dssp TEEEEEEECTTCSS-CEE----EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE--ECCCSSCE
T ss_pred CceEEEEEcCCCCc-eEE----eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE--ecCCCCCe
Confidence 56666543332 112 2234445555555 5666444444 257899999876432 11121 2222 345
Q ss_pred eEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCC-CCcEEEEEeeecCCccCCCCCceEEE---ecCCCCcEEE
Q 044557 279 ILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGH-RGPVKCLAAAIDNDRCDSSDTSYLVC---SGSLDCDIKV 353 (362)
Q Consensus 279 v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~---s~s~D~~i~~ 353 (362)
+..+++.++ ++++...|+..+||.... .......+..+ ...|..++++++++ .+++ +...+++|++
T Consensus 322 l~~~~~~~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 322 LLSVSIVGGHLSLEYLKDATSEVRVATL-KGKPVRTVQLPGVGAASNLMGLEDLD--------DAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEET-TCCEEEECCCSSSSEECCCBSCTTCS--------EEEEEEEETTEEEEEEE
T ss_pred EEEEEEECCEEEEEEEECCEEEEEEEeC-CCCeeEEecCCCCeEEEEeecCCCCC--------EEEEEEcCCCCCCEEEE
Confidence 677777755 788899999999996432 12334555544 55666666654332 2332 4455678999
Q ss_pred Eeccc
Q 044557 354 WQISF 358 (362)
Q Consensus 354 W~~~~ 358 (362)
||+..
T Consensus 393 ~d~~~ 397 (695)
T 2bkl_A 393 TSVST 397 (695)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99854
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.39 E-value=4.9e-11 Score=116.82 Aligned_cols=199 Identities=12% Similarity=0.057 Sum_probs=127.2
Q ss_pred ceeEEEEecCCCEEEEEECCC-----cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCe----------
Q 044557 144 AVSALALTKDETLLYSVSWDR-----TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKK---------- 207 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~---------- 207 (362)
.+..++|+|||++||.++.++ .|++||+.+++...... .+ ..+..++|+|||+ |+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 567899999999988776544 89999999998765332 12 2356789999997 776666655
Q ss_pred ------EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-----CCcEEEEeccC------CCCcEEEEE
Q 044557 208 ------IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-----DRSIIVWEKEE------DDGNILVVG 270 (362)
Q Consensus 208 ------i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-----d~~i~~wd~~~------~~~~~~~~~ 270 (362)
|.+|++.++.....++.....|...+..+.|+|||++|+.++. +..|++||+.. +......
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-- 281 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK-- 281 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE--
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE--
Confidence 9999997754322233222334556788999999999987765 66899999875 3212222
Q ss_pred eecCccceeEE-EEEeCCeEEEeeC-C---CcEEEeeCCCCceeeeeEecCCCC--cEEEEEeeecCCccCCCCCceEEE
Q 044557 271 ALRGHTKSILC-MAVVSDLVCSGSA-D---KTIRIWRGIDRNYTCLAVLEGHRG--PVKCLAAAIDNDRCDSSDTSYLVC 343 (362)
Q Consensus 271 ~~~~h~~~v~~-~~~~~~~~~s~s~-D---~~i~~W~~~~~~~~~~~~l~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~ 343 (362)
+..+...+.. +...++.++..+. + ..|.+|+...........+..|.. .+..+++++ .+++++
T Consensus 282 -l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~lv~ 351 (710)
T 2xdw_A 282 -LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR---------SNFLVL 351 (710)
T ss_dssp -EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET---------TTEEEE
T ss_pred -eeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc---------CCEEEE
Confidence 2334433332 3344564443333 2 358888864322112345556655 677777753 236788
Q ss_pred ecCCCCcEEEEec
Q 044557 344 SGSLDCDIKVWQI 356 (362)
Q Consensus 344 s~s~D~~i~~W~~ 356 (362)
++..|+..+||-+
T Consensus 352 ~~~~~g~~~l~~~ 364 (710)
T 2xdw_A 352 CYLHDVKNTLQLH 364 (710)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEECCEEEEEEE
Confidence 9988987555433
No 181
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.37 E-value=5.7e-10 Score=100.09 Aligned_cols=270 Identities=13% Similarity=0.117 Sum_probs=160.1
Q ss_pred cceeeecccCccceeeeEe--cCcEEEEec----------CCCeEEEeecCCCCcccceeee-ccceeEEeecceeEEEE
Q 044557 9 HHCLTTLKGHNSYVSSLAL--AGKFLYTGS----------SDNEVRSWDCNTFSSELDQEFL-SNNNIVAVGKGAVKSLV 75 (362)
Q Consensus 9 ~~~~~tl~gH~~~V~~l~~--~~~~l~t~s----------~Dg~i~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~i~ 75 (362)
.+.+.++..+..+ .+.+ +++++++++ .+++|.+||..+... ..... ..... .+......+.
T Consensus 41 ~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~--~~~i~~~~~~~--~~g~~p~~i~ 114 (361)
T 2oiz_A 41 GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF--EKEISLPPKRV--QGLNYDGLFR 114 (361)
T ss_dssp CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE--EEEEEECTTBC--CBCCCGGGEE
T ss_pred CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE--EEEEEcCcccc--ccCCCcceEE
Confidence 4556677766666 6777 477887775 367899999865331 11111 00000 0011233455
Q ss_pred EcC--ceeEEEec--CCcEEEEecCCCCCCcccceeeee-ccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEE
Q 044557 76 VLA--DKLFSAHQ--DHKIRVWKINNQEPDHQKYTRLAT-LPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALAL 150 (362)
Q Consensus 76 ~~~--~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 150 (362)
+++ .+|+++.. +++|.+||++..+. +.. ++. .....+.+
T Consensus 115 ~spdg~~l~v~n~~~~~~v~v~d~~~~~~-------~~~~i~~-----------------------------~~~~~v~~ 158 (361)
T 2oiz_A 115 QTTDGKFIVLQNASPATSIGIVDVAKGDY-------VEDVTAA-----------------------------AGCWSVIP 158 (361)
T ss_dssp ECTTSSEEEEEEESSSEEEEEEETTTTEE-------EEEEGGG-----------------------------TTEEEEEE
T ss_pred ECCCCCEEEEECCCCCCeEEEEECCCCcE-------EEEEecC-----------------------------CCcceeEE
Confidence 554 45888764 58999999875421 111 110 00111345
Q ss_pred ecCC-CEEEEEECCCcEEEEECCC-ceEEEee-----eccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCccee
Q 044557 151 TKDE-TLLYSVSWDRTIKIWRTSD-FKCLESI-----TNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 151 ~~~~-~~l~s~s~d~~i~iwd~~~-~~~~~~~-----~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.|++ ..+++.+.||.+.+|+... ++..... ...+..++ .+.+++++. ++..+.++.|.++|+...... .
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~--~ 235 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVK--V 235 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCE--E
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCce--e
Confidence 5654 5777888899999888754 4433111 11122221 223345553 666678899999998654321 1
Q ss_pred ehh--------hhc--cccceeEEEEecCCCEEEEEcC-----------CCcEEEEeccCCCCcEEEEEeecCccceeEE
Q 044557 223 VDV--------LER--HNSGINALALSCDGSVLYSGAC-----------DRSIIVWEKEEDDGNILVVGALRGHTKSILC 281 (362)
Q Consensus 223 ~~~--------~~~--h~~~v~~i~~s~~~~~l~s~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~ 281 (362)
... ... .......++|+||++.++++.. .++|.+||+.+.+ .+..+..+. +..
T Consensus 236 ~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~----~v~~i~~~~--p~~ 309 (361)
T 2oiz_A 236 DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ----RVARIPGRD--ALS 309 (361)
T ss_dssp EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE----EEEEEECTT--CCE
T ss_pred cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc----EEEEEecCC--eeE
Confidence 110 000 1122234789999998887643 3579999987642 455666666 888
Q ss_pred EEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecC
Q 044557 282 MAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDN 330 (362)
Q Consensus 282 ~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~ 330 (362)
++++++ ++++++. ++|.+||......+.++++.++......++++|++
T Consensus 310 ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 310 MTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 999765 7777776 99999996432227788887788888889998765
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.35 E-value=3.4e-08 Score=85.35 Aligned_cols=278 Identities=11% Similarity=0.065 Sum_probs=170.3
Q ss_pred cccCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEec-CCcE
Q 044557 15 LKGHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQ-DHKI 90 (362)
Q Consensus 15 l~gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~-dg~i 90 (362)
+..+...+.++.++ |+..++...++.|.+||.. .. .. .+... .....+..+.+.++ .++.+.. ++.|
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~--~~-~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i 80 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK--IT-EYPLP-----TPDAKVMCLTISSDGEVWFTENAANKI 80 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC--EE-EEECS-----STTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC--eE-EecCC-----cccCceeeEEECCCCCEEEeCCCCCeE
Confidence 45566788999985 6666666668999999865 21 11 11100 01234556666543 4555544 6788
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWR 170 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 170 (362)
..|+.+. . .... ..+ .....+..+++.++++++++...++.|.+||
T Consensus 81 ~~~~~~g-~-----~~~~-~~~---------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 126 (299)
T 2z2n_A 81 GRITKKG-I-----IKEY-TLP---------------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRIT 126 (299)
T ss_dssp EEECTTS-C-----EEEE-ECS---------------------------STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEECCCC-c-----EEEE-eCC---------------------------CcCCCceeeEECCCCCEEEEecCCceEEEEC
Confidence 8887641 1 0000 010 0123467889999999888877789999999
Q ss_pred CCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEc
Q 044557 171 TSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 171 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
. +++............+..+++.++|.++.+. .++.|..||. ++... .. ........+..++++++|...++..
T Consensus 127 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~--~~~~~~~~~~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 127 D-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-EF--KIPTPASGPVGITKGNDDALWFVEI 201 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE--ECSSTTCCEEEEEECTTSSEEEEET
T ss_pred C-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-Ee--eCCCCCCcceeEEECCCCCEEEEcc
Confidence 8 4443332222234568899999999866554 5689999988 44321 11 1122344578899999999877777
Q ss_pred CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 250 CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.++.|..|+. ++. ... .....+...+.++.++++ +.++...++.|..|+. ..... ...+..+...+.++++
T Consensus 202 ~~~~i~~~~~-~g~--~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~- 274 (299)
T 2z2n_A 202 IGNKIGRITT-SGE--ITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPIQIKSAEPHGICF- 274 (299)
T ss_dssp TTTEEEEECT-TCC--EEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEECSSSSCCEEEEEE-
T ss_pred CCceEEEECC-CCc--EEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeCCCCCCccceEEe-
Confidence 7889999998 432 222 223344566788888653 5666667889999985 22221 1123455677888887
Q ss_pred ecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 328 IDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 328 ~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+++ .+.++.+ .+.|..++..
T Consensus 275 ~~g---------~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 275 DGE---------TIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp CSS---------CEEEEET-TTEEEEEEEC
T ss_pred cCC---------CEEEEec-CCcEEEEEcC
Confidence 543 3444544 4555555554
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.34 E-value=2.4e-11 Score=118.64 Aligned_cols=200 Identities=8% Similarity=0.000 Sum_probs=127.3
Q ss_pred ecCceeEEEEecCCCEEE-----EEECCCcEEEEECCCceEE-EeeeccCcccEEEEEEcCCCc-EEEEeCCCe------
Q 044557 141 HVDAVSALALTKDETLLY-----SVSWDRTIKIWRTSDFKCL-ESITNAHDDAINAVALSDDGD-VYTGSADKK------ 207 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~-----s~s~d~~i~iwd~~~~~~~-~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~------ 207 (362)
|...+..++|+|||++|| .|+.+..|++||+.+++.+ .... .. .....++|+|+|+ |+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EG-GKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SC-CTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-Cc-ccccceEEecCCCEEEEEEecCCCCCccc
Confidence 344578899999999988 4555678999999998764 2111 11 1125789999997 777777665
Q ss_pred -------EEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC----cEEEEeccCCCCcEEEEEeecCcc
Q 044557 208 -------IKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR----SIIVWEKEEDDGNILVVGALRGHT 276 (362)
Q Consensus 208 -------i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~h~ 276 (362)
|++|++.++.....++.....|...+..+.|+|||++|+.++.++ .|.+|+.... ....+ ..+.
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l---~~~~ 271 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK--DFRLL---VKGV 271 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS--SCEEE---EECS
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC--ceEEe---ecCC
Confidence 999999876532234333344556788999999999998887666 6667755432 22222 2233
Q ss_pred ceeEEEEEe-CCeEEEee---CCCcEEEeeCCCCceeeeeEecCC--CCcEEEEEeeecCCccCCCCCceEEEecCCCCc
Q 044557 277 KSILCMAVV-SDLVCSGS---ADKTIRIWRGIDRNYTCLAVLEGH--RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD 350 (362)
Q Consensus 277 ~~v~~~~~~-~~~~~s~s---~D~~i~~W~~~~~~~~~~~~l~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~ 350 (362)
..+....+. +++++++. .++.|.+|+...........+..| ...+..++++ +++++++.+.|+.
T Consensus 272 ~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~----------~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 272 GAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV----------GGHLSLEYLKDAT 341 (695)
T ss_dssp SCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE----------TTEEEEEEEETTE
T ss_pred CceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE----------CCEEEEEEEECCE
Confidence 333333333 33444444 357899998643221112334333 4457777775 1368899999999
Q ss_pred EEEEecc
Q 044557 351 IKVWQIS 357 (362)
Q Consensus 351 i~~W~~~ 357 (362)
.+||.+.
T Consensus 342 ~~l~~~~ 348 (695)
T 2bkl_A 342 SEVRVAT 348 (695)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999765
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.33 E-value=9.6e-10 Score=107.64 Aligned_cols=199 Identities=15% Similarity=0.054 Sum_probs=126.6
Q ss_pred eeEEEEecCCCEEEEEECCCc----------------EEEEECCCceEE--Eeee-ccCcccEEEEEEcCCCc-EEEEeC
Q 044557 145 VSALALTKDETLLYSVSWDRT----------------IKIWRTSDFKCL--ESIT-NAHDDAINAVALSDDGD-VYTGSA 204 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~----------------i~iwd~~~~~~~--~~~~-~~h~~~v~~v~~~~~~~-~~s~~~ 204 (362)
+..++|+||++.|+.++.++. |++|++.+++.. .... ..|...+..+.|+|+|+ ++.++.
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 567899999999999888766 999999876521 1111 12455678899999997 544432
Q ss_pred -----CCeEEEEeCCC------CCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC----cEEEEeccCCCC-cEEE
Q 044557 205 -----DKKIKVWRRSP------GNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR----SIIVWEKEEDDG-NILV 268 (362)
Q Consensus 205 -----dg~i~iw~~~~------~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~----~i~~wd~~~~~~-~~~~ 268 (362)
+..|.+||+.+ +..... .+..+...+.. .|+|+|..|+..+.++ .|.+||+..... ....
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 328 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWV---KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV 328 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCE---EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred ccCCCccEEEEEECcccccccCCccceE---EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee
Confidence 67899999875 321111 12234444443 5889999887666533 589999876431 1122
Q ss_pred EEeecCccc--eeEEEEEe-CC-eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEe
Q 044557 269 VGALRGHTK--SILCMAVV-SD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCS 344 (362)
Q Consensus 269 ~~~~~~h~~--~v~~~~~~-~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 344 (362)
+..|.. .+..+.+. .+ ++++...|+..+||......+..+..+..+...|..++++|+++ .++++
T Consensus 329 ---l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~--------~l~~~ 397 (710)
T 2xdw_A 329 ---LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT--------EIFYQ 397 (710)
T ss_dssp ---EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS--------EEEEE
T ss_pred ---ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC--------EEEEE
Confidence 223333 56777877 44 67888889876665432223345667777777888888766432 23333
Q ss_pred ---cCCCCcEEEEeccc
Q 044557 345 ---GSLDCDIKVWQISF 358 (362)
Q Consensus 345 ---~s~D~~i~~W~~~~ 358 (362)
....++|.+||+..
T Consensus 398 ~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 398 FTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EECSSCCCEEEEEETTS
T ss_pred EeCCCCCCEEEEEECCC
Confidence 34567899999853
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.33 E-value=1.1e-09 Score=93.53 Aligned_cols=195 Identities=9% Similarity=0.024 Sum_probs=130.1
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEE-EeCCCeEEEEeCCCCCCccee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYT-GSADKKIKVWRRSPGNKKHSL 222 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s-~~~dg~i~iw~~~~~~~~~~~ 222 (362)
.+.+++++++++++++.. ++.|.+||....... .+.......+..+++.++|.++. ...++.|.+|+..+... ..
T Consensus 68 ~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~~ 143 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TV 143 (270)
T ss_dssp SCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--EE
T ss_pred CcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--Ee
Confidence 456789999999666655 889999998765432 22222335688999999998654 45678999997543321 11
Q ss_pred ehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEE
Q 044557 223 VDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRI 300 (362)
Q Consensus 223 ~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~ 300 (362)
. .......+..++++|+|+.+++...++.|..|+..... . ......+...+..++++++ ++++...++.|.+
T Consensus 144 ~--~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--~--~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 144 L--PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN--Q--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 217 (270)
T ss_dssp C--CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC--E--EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred e--ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc--e--EeecccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence 1 11223357789999999977777778899999976432 1 1112223355778888754 6677777889999
Q ss_pred eeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecccC
Q 044557 301 WRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISFP 359 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~~ 359 (362)
|+...... ......+-..+.++++.+++ .++++.+.+++|+++++..+
T Consensus 218 ~~~~~~~~--~~~~~~~~~~p~~i~~~~~g---------~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 218 LLAGSTTS--TVLPFTGLNTPLAVAVDSDR---------TVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp ECTTCSCC--EECCCCSCSCEEEEEECTTC---------CEEEEEGGGTEEEEECCCGG
T ss_pred EcCCCCcc--eeeccCCCCCceeEEECCCC---------CEEEEECCCCEEEEEcCCCc
Confidence 98543221 11222344678888886543 46778888999999998654
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.32 E-value=1.2e-09 Score=96.99 Aligned_cols=182 Identities=8% Similarity=0.064 Sum_probs=116.4
Q ss_pred ceeEEEEecCCCEEEEEECC---C--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeC-------------
Q 044557 144 AVSALALTKDETLLYSVSWD---R--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSA------------- 204 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d---~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~------------- 204 (362)
.+..++|+|||+.|+.++.+ + .|.+|++.+++...... .+ . +..++|+|+|+ ++.++.
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 45678999999998887754 2 47888888877654332 22 3 88999999997 655542
Q ss_pred --------------CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC-------cEEEEeccCCC
Q 044557 205 --------------DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR-------SIIVWEKEEDD 263 (362)
Q Consensus 205 --------------dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-------~i~~wd~~~~~ 263 (362)
...|.+||+.++.....+ .. . .+..++|+||| .+++++.+. ...+|.+..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l----~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-- 207 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF----EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED-- 207 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEE----EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeee----cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC--
Confidence 256888998765421222 12 2 68899999999 888776552 445555542
Q ss_pred CcEEEEEeecCccceeEEEEEeCCeEEEeeCC--------CcEEEeeCCCCceeeeeEecCCCCcEEE-EEeeecCCccC
Q 044557 264 GNILVVGALRGHTKSILCMAVVSDLVCSGSAD--------KTIRIWRGIDRNYTCLAVLEGHRGPVKC-LAAAIDNDRCD 334 (362)
Q Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D--------~~i~~W~~~~~~~~~~~~l~~h~~~v~~-~~~~~~~~~~~ 334 (362)
+....+ ..+ ..+..+...+..++.++.+ ..|.+|+ . ........+|...+.. +.|+
T Consensus 208 ~~~~~l---~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~--~~~~~l~~~~~~~~~~~~~~s------- 272 (347)
T 2gop_A 208 GKEEKM---FEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--G--KEVMGILDEVDRGVGQAKIKD------- 272 (347)
T ss_dssp TEEEEE---EEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--S--SCEEESSTTCCSEEEEEEEET-------
T ss_pred CceEEe---ccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--C--CceEeccccCCcccCCccEEc-------
Confidence 222222 223 4445554455567666644 3577776 2 2233334566777775 6663
Q ss_pred CCCCceEEEecCCCCcEEEEecc
Q 044557 335 SSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 335 ~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++ ++++++.|+.++|| +.
T Consensus 273 ---dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 273 ---GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp ---TE-EEEEEEETTEEEEE-EE
T ss_pred ---Cc-EEEEEecCCcEEEE-Ec
Confidence 23 68889999999999 75
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.31 E-value=1.9e-09 Score=95.28 Aligned_cols=199 Identities=11% Similarity=0.093 Sum_probs=128.5
Q ss_pred ecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CC----CeEEEEeCCC
Q 044557 141 HVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-AD----KKIKVWRRSP 215 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~d----g~i~iw~~~~ 215 (362)
+...+.+++|+|++++++++..++.|.+||..+++...... .+...+.+++++|+|.++.++ .+ +.|.+||..+
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence 34556889999999988888889999999998876544332 355679999999999866554 44 5899999876
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC------CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC------DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-- 287 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-- 287 (362)
+.... .... ..+...+..++++|+|..+++... .+.|..++.... ....+ ..+...+..++++++
T Consensus 122 ~~~~~-~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~--~~~~~---~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 122 DNLQD-IIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR--TVTPI---IQNISVANGIALSTDEK 194 (333)
T ss_dssp CSCEE-EECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC--CEEEE---EEEESSEEEEEECTTSS
T ss_pred CEEEE-EEcc-CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC--EEEEe---ecCCCcccceEECCCCC
Confidence 54321 1111 123456889999999988877654 245555554432 22221 122334667888764
Q ss_pred -eEEEeeCCCcEEEeeCCCC--ceee-----eeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 288 -LVCSGSADKTIRIWRGIDR--NYTC-----LAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 288 -~~~s~s~D~~i~~W~~~~~--~~~~-----~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++++.+.++.|.+|+.... .... ...+.++ ..+..+++.+++ .++++...++.|.+||..
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G---------~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD---------NLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC---------CEEEEEETTTEEEEECTT
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC---------CEEEEEcCCCEEEEECCC
Confidence 4456667889999986321 1111 1122333 456777776543 456666667899999874
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.31 E-value=6.6e-10 Score=96.60 Aligned_cols=196 Identities=14% Similarity=0.149 Sum_probs=128.0
Q ss_pred ecCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCC
Q 044557 141 HVDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNK 218 (362)
Q Consensus 141 h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~ 218 (362)
+.....+++|+|+++ +++++..++.|..|+..++ ...+. .+...+.+++++|+|.++.+. .++.|.+||..++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 345567899999998 7888888999999999877 44443 456678999999999866655 468999999876653
Q ss_pred cceeehhhh-ccccceeEEEEecCCCEEEEE----cC-------------CCcEEEEeccCCCCcEEEEEeecCccceeE
Q 044557 219 KHSLVDVLE-RHNSGINALALSCDGSVLYSG----AC-------------DRSIIVWEKEEDDGNILVVGALRGHTKSIL 280 (362)
Q Consensus 219 ~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~----~~-------------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~ 280 (362)
. .+..... .....+..++++|+|+.+++. .. .+.|..++.. ..... +..+.....
T Consensus 103 ~-~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~---~~~~~~~~~ 175 (296)
T 3e5z_A 103 E-SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---GTLSA---PIRDRVKPN 175 (296)
T ss_dssp E-EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---SCEEE---EECCCSSEE
T ss_pred E-EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC---CCEEE---eecCCCCCc
Confidence 2 1211111 112356789999999988873 31 2345555443 22222 234455567
Q ss_pred EEEEeCC--eEEEeeCCCcEEEeeCC-CCce-eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 281 CMAVVSD--LVCSGSADKTIRIWRGI-DRNY-TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 281 ~~~~~~~--~~~s~s~D~~i~~W~~~-~~~~-~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.++++++ .+++.+.++.|.+|+.. .... .....+..+...+.++++.+++ .++++. ++.|.+|+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G---------~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG---------LIWASA--GDGVHVLTP 244 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS---------CEEEEE--TTEEEEECT
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC---------CEEEEc--CCeEEEECC
Confidence 8888754 56888888999999864 2222 1122333345556677776543 344444 788999987
Q ss_pred c
Q 044557 357 S 357 (362)
Q Consensus 357 ~ 357 (362)
.
T Consensus 245 ~ 245 (296)
T 3e5z_A 245 D 245 (296)
T ss_dssp T
T ss_pred C
Confidence 5
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.30 E-value=1.5e-09 Score=93.40 Aligned_cols=205 Identities=12% Similarity=0.061 Sum_probs=131.1
Q ss_pred eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeec-CceeEEEEecCCCEEE
Q 044557 80 KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHV-DAVSALALTKDETLLY 158 (362)
Q Consensus 80 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~ 158 (362)
.|++++.|+.|.+||.++++.. ... ..+. ..+.++.+.|+|++|+
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~-------w~~---------------------------~~~~~~~~~~~~~~pdG~ilv 52 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIV-------WEY---------------------------PLEKGWECNSVAATKAGEILF 52 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEE-------EEE---------------------------ECCTTCCCCEEEECTTSCEEE
T ss_pred EEEeeCCCCEEEEEECCCCeEE-------EEe---------------------------CCCccCCCcCeEECCCCCEEE
Confidence 4778889999999998655411 000 0111 2467888999999988
Q ss_pred EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeC-CCeEEEEeCCCCCCcceee--hhhhcccccee
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSA-DKKIKVWRRSPGNKKHSLV--DVLERHNSGIN 234 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~-dg~i~iw~~~~~~~~~~~~--~~~~~h~~~v~ 234 (362)
+.++.|..||. +++.+..+.......+.++.+.++|. +++.+. ++.|..++. +++...+.. .....+.....
T Consensus 53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~ 128 (276)
T 3no2_A 53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFR 128 (276)
T ss_dssp --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCS
T ss_pred --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccccccc
Confidence 45889999999 78877777643345788899999998 455555 677777775 343222221 01112223455
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe--CCeEEEeeCCCcEEEeeCCCCceeeee
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV--SDLVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
.+++.++|.+|++...++.|.+||.. ++. +..+... ..+.+.... ++.+++++.++.|..++.. +++.+.
T Consensus 129 ~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~----~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~--tG~~~w 200 (276)
T 3no2_A 129 QINKNKKGNYLVPLFATSEVREIAPN-GQL----LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE--SNRIVR 200 (276)
T ss_dssp CCEECTTSCEEEEETTTTEEEEECTT-SCE----EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT--TCCEEE
T ss_pred CceECCCCCEEEEecCCCEEEEECCC-CCE----EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc--CCcEEE
Confidence 67788999999999999999999986 432 2223322 233444444 4578888888889999843 245555
Q ss_pred EecCCC------CcEEEEEeeecC
Q 044557 313 VLEGHR------GPVKCLAAAIDN 330 (362)
Q Consensus 313 ~l~~h~------~~v~~~~~~~~~ 330 (362)
++..+. ..+..++..+++
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~G 224 (276)
T 3no2_A 201 RVNANDIEGVQLFFVAQLFPLQNG 224 (276)
T ss_dssp EEEGGGSBSCCCSEEEEEEECTTS
T ss_pred EecCCCCCCccccccccceEcCCC
Confidence 554322 225666665544
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.27 E-value=3.2e-09 Score=90.63 Aligned_cols=249 Identities=10% Similarity=0.101 Sum_probs=150.5
Q ss_pred cceeccceeeecccCc-c-ceeeeEec--CcEEE-EecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcC
Q 044557 4 LSVVDHHCLTTLKGHN-S-YVSSLALA--GKFLY-TGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLA 78 (362)
Q Consensus 4 ~~~~~~~~~~tl~gH~-~-~V~~l~~~--~~~l~-t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 78 (362)
++..+.+....+.+-. . ...++.++ +++++ +.+.++.|.+||..+.... ... ..+......+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---~~~------~~~~~~p~~i~~~~ 76 (270)
T 1rwi_B 6 PTQASGQTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---VLP------FNGLYQPQGLAVDG 76 (270)
T ss_dssp ------CEECCCCSCSSCCCEEEEEECTTCCEEEEECSSSCEEEEECC-----E---ECC------CCSCCSCCCEEECT
T ss_pred CCCCCCcccCccccccccCCccceEECCCCCEEEEccCCCCcEEEecCCCcccc---eEe------eCCcCCcceeEECC
Confidence 3344444444444432 1 56777774 66666 5578899999986442210 000 00112345566654
Q ss_pred c-eeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 79 D-KLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 79 ~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
+ .++.+..++.|..|+.+..... ... ......+..++++++++++
T Consensus 77 ~g~l~v~~~~~~i~~~d~~~~~~~--------~~~--------------------------~~~~~~p~~i~~~~~g~l~ 122 (270)
T 1rwi_B 77 AGTVYVTDFNNRVVTLAAGSNNQT--------VLP--------------------------FDGLNYPEGLAVDTQGAVY 122 (270)
T ss_dssp TCCEEEEETTTEEEEECTTCSCCE--------ECC--------------------------CCSCSSEEEEEECTTCCEE
T ss_pred CCCEEEEcCCCEEEEEeCCCceEe--------eee--------------------------cCCcCCCcceEECCCCCEE
Confidence 3 4666666888999986542210 000 0012346789999999988
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEE-eCCCeEEEEeCCCCCCcceeehhhhccccceeEE
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTG-SADKKIKVWRRSPGNKKHSLVDVLERHNSGINAL 236 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i 236 (362)
++...++.|.+|+..+....... ......+..+++.++|.++.+ ..++.|.+|+........ ....+...+..+
T Consensus 123 v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~----~~~~~~~~p~~i 197 (270)
T 1rwi_B 123 VADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV----LPFTDITAPWGI 197 (270)
T ss_dssp EEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE----CCCSSCCSEEEE
T ss_pred EEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe----ecccCCCCceEE
Confidence 87777899999986655433221 122335678999999986544 457899999986543211 111222567889
Q ss_pred EEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCC
Q 044557 237 ALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~ 304 (362)
+++++|..+++...++.|..|+...... .. ....+...+.++++++ .++++.+.++.|++++..
T Consensus 198 ~~d~~g~l~v~~~~~~~v~~~~~~~~~~--~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 198 AVDEAGTVYVTEHNTNQVVKLLAGSTTS--TV--LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EECTTCCEEEEETTTSCEEEECTTCSCC--EE--CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EECCCCCEEEEECCCCcEEEEcCCCCcc--ee--eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 9999998777777889999999864321 11 1222335678888864 478888899999999853
No 191
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.25 E-value=1.1e-08 Score=100.60 Aligned_cols=196 Identities=12% Similarity=0.064 Sum_probs=122.1
Q ss_pred eEEEEecCCCEEEEEECCCc--------------EEEEECCCceE--EEeee-ccCcccEEEEEEcCCCc-EEEEeCC--
Q 044557 146 SALALTKDETLLYSVSWDRT--------------IKIWRTSDFKC--LESIT-NAHDDAINAVALSDDGD-VYTGSAD-- 205 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~~--------------i~iwd~~~~~~--~~~~~-~~h~~~v~~v~~~~~~~-~~s~~~d-- 205 (362)
..++|+|| +.|+.++.|+. |++|++.++.. ...+. ..+...+..+.|+|+|+ ++..+.+
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence 46789999 88888877654 88999876542 11121 12333578999999997 5544433
Q ss_pred ---CeEEEEeCCCCC-C-cceeehhhhccccceeEEEEecCCCEEEEEcCCC----cEEEEeccCCCCcEEEEEeecCcc
Q 044557 206 ---KKIKVWRRSPGN-K-KHSLVDVLERHNSGINALALSCDGSVLYSGACDR----SIIVWEKEEDDGNILVVGALRGHT 276 (362)
Q Consensus 206 ---g~i~iw~~~~~~-~-~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~h~ 276 (362)
..|.+||+.++. . ...+ ..+...+... ++|+|..|+..+.++ .|.+||+......... .+..+.
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l----~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~--l~~~~~ 363 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTAL----IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT--VVPESK 363 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEE----ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE--EECCCS
T ss_pred CCcceEEEEECCCCCCcccEEe----cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEE--EecCCC
Confidence 489999987652 1 1122 2233334433 358999888777643 4999998653211222 234445
Q ss_pred ceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecC-CCCcEEEEEeeecCCccCCCCCceEEE---ecCCCCcE
Q 044557 277 KSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEG-HRGPVKCLAAAIDNDRCDSSDTSYLVC---SGSLDCDI 351 (362)
Q Consensus 277 ~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~---s~s~D~~i 351 (362)
..+..+.+.++ ++++...|+..+||.... .......+.. +...|..++++++++. +++ +....++|
T Consensus 364 ~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~--------l~~~~ss~~~P~~i 434 (741)
T 1yr2_A 364 DNLESVGIAGNRLFASYIHDAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRH--------AYLSFSSFTQPATV 434 (741)
T ss_dssp SEEEEEEEEBTEEEEEEEETTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSC--------EEEEEEETTEEEEE
T ss_pred CeEEEEEEECCEEEEEEEECCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCE--------EEEEEcCCCCCCEE
Confidence 55667777655 778889999999886432 2234455554 4667888888775432 222 44566889
Q ss_pred EEEeccc
Q 044557 352 KVWQISF 358 (362)
Q Consensus 352 ~~W~~~~ 358 (362)
.+||+..
T Consensus 435 ~~~d~~t 441 (741)
T 1yr2_A 435 LALDPAT 441 (741)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999853
No 192
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.24 E-value=3.6e-10 Score=101.31 Aligned_cols=168 Identities=8% Similarity=0.022 Sum_probs=118.6
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCce---------EEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeC
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFK---------CLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRR 213 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---------~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~ 213 (362)
.+..+++++...++++|+.| .+++|++.+.+ ........+.. |..++| ++. ++++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 57889999999999999987 55569865433 11111123455 999999 665 5555 8899999998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEee
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGS 293 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s 293 (362)
.+..... ....|..++.++.+.+. .++++..||.+.+||+.+... .. +...|.|++|+++-++.|.
T Consensus 114 ~sl~~~~----~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~--~~------~~~~Vs~v~WSpkG~~vg~ 179 (388)
T 1xip_A 114 EELSEFR----TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST--KQ------LAQNVTSFDVTNSQLAVLL 179 (388)
T ss_dssp SSTTCEE----EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE--EE------EEESEEEEEECSSEEEEEE
T ss_pred hhhhccC----ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc--cc------ccCCceEEEEcCCceEEEE
Confidence 7654221 23456677888776654 388999999999999985432 11 4567999999998889999
Q ss_pred CCCcEEEeeCCCCceeeeeEe------c---CCCCcEEEEEeeecC
Q 044557 294 ADKTIRIWRGIDRNYTCLAVL------E---GHRGPVKCLAAAIDN 330 (362)
Q Consensus 294 ~D~~i~~W~~~~~~~~~~~~l------~---~h~~~v~~~~~~~~~ 330 (362)
.||++++|+.........+++ . +|...|.++.|.++.
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 999999997533221113344 3 578889999887653
No 193
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.21 E-value=9.7e-08 Score=82.97 Aligned_cols=181 Identities=12% Similarity=0.093 Sum_probs=114.8
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc---CcccEEEEEEcCCCcEEEEeC----------CCeEE
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA---HDDAINAVALSDDGDVYTGSA----------DKKIK 209 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~s~~~----------dg~i~ 209 (362)
..+.+++++++++++++ . ++.|.+||.++++........ ....+..+++.|+|+++.++. ...-.
T Consensus 54 ~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 54 APVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp SCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred CceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcE
Confidence 46788999999996554 4 678999999877643222111 123478899999999665442 13345
Q ss_pred EEeCCCCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcE---EEEEeecCccceeEEEEEe
Q 044557 210 VWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNI---LVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~---~~~~~~~~h~~~v~~~~~~ 285 (362)
+|.+........+ ..+....+.++|+||++.|+ +.+.++.|..|++....+.. .....+..+......++++
T Consensus 132 l~~~d~~g~~~~~----~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 132 LYSLFPDHHVKKY----FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID 207 (297)
T ss_dssp EEEECTTSCEEEE----EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred EEEEECCCCEEEE----eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence 6655433221111 12233457899999998765 55667889999874222222 2223333344566778886
Q ss_pred CC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee-ecCC
Q 044557 286 SD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA-IDND 331 (362)
Q Consensus 286 ~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~-~~~~ 331 (362)
++ +.++...++.|..|+.. +++.+..+..+...+++++|. |+++
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~--tG~~~~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPV--TGKRLQTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTT--TCCEEEEEECSSSBEEEEEEESGGGC
T ss_pred CCCCEEEEEcCCCEEEEEcCC--CceEEEEEECCCCCceEEEEeCCCCC
Confidence 43 66676777889999843 345667777777789999997 5543
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.20 E-value=5.4e-08 Score=92.13 Aligned_cols=278 Identities=13% Similarity=0.146 Sum_probs=164.2
Q ss_pred eeeeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEecCCcEEEEecC--C
Q 044557 22 VSSLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAHQDHKIRVWKIN--N 97 (362)
Q Consensus 22 V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~~dg~i~~w~~~--~ 97 (362)
+......+.++++...+++|.++|..+... ..... .+. ....+.++++ ++++++.|+.|.+||+. +
T Consensus 160 ~~~~d~~~~~~V~~~~~~~V~viD~~t~~v--~~~i~-------~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t 229 (567)
T 1qks_A 160 MNDWDLENLFSVTLRDAGQIALIDGSTYEI--KTVLD-------TGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKE 229 (567)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCCE--EEEEE-------CSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred ccccCCCceEEEEeCCCCeEEEEECCCCeE--EEEEe-------CCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence 334343456788888999999999876431 11111 111 2234556554 58999999999999984 2
Q ss_pred CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEe----cCCCEEEEEE-CCCcEEEEECC
Q 044557 98 QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALT----KDETLLYSVS-WDRTIKIWRTS 172 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~s-~d~~i~iwd~~ 172 (362)
... +..++ .......++|+ |||++++++. .++.|.++|..
T Consensus 230 ~~~-------v~~i~----------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 230 PTT-------VAEIK----------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp CCE-------EEEEE----------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CcE-------eEEEe----------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 210 11111 01224678899 6999888776 45899999999
Q ss_pred CceEEEeeecc---------Ccc-cEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 173 DFKCLESITNA---------HDD-AINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 173 ~~~~~~~~~~~---------h~~-~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
+.+.+..+... |.. .+..+..++++. +++...+|.|.++|..+.... .. ..+ ........+.|+|
T Consensus 275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~-~v-~~i-~~~~~~~d~~~~p 351 (567)
T 1qks_A 275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL-KT-TEI-SAERFLHDGGLDG 351 (567)
T ss_dssp TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE-EE-EEE-ECCSSEEEEEECT
T ss_pred CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc-ee-eee-eccccccCceECC
Confidence 98887765421 112 467788888765 455667899999998764311 11 111 1223355788999
Q ss_pred CCCEEEEEc-CCCcEEEEeccCCCCcEEEEEee---cCccceeEEEEEeCC---eEEEee-CCCcEEEeeCCCCc-----
Q 044557 241 DGSVLYSGA-CDRSIIVWEKEEDDGNILVVGAL---RGHTKSILCMAVVSD---LVCSGS-ADKTIRIWRGIDRN----- 307 (362)
Q Consensus 241 ~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~---~~~s~s-~D~~i~~W~~~~~~----- 307 (362)
+|++++++. .++.|.++|..+.+ ....... .-|.++-..+ +.++ ..+++. .++.|.+++....+
T Consensus 352 dgr~~~va~~~sn~V~ViD~~t~k--l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~ 428 (567)
T 1qks_A 352 SHRYFITAANARNKLVVIDTKEGK--LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA 428 (567)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred CCCEEEEEeCCCCeEEEEECCCCc--EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcccc
Confidence 999987665 67899999998643 2211112 1243322222 3433 445543 56899999854311
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEec--CC----CCcEEEEeccc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSG--SL----DCDIKVWQISF 358 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~--s~----D~~i~~W~~~~ 358 (362)
++.++++......-..+.++|++. ++.++. .- ..+|.++|+..
T Consensus 429 ~kvv~~i~~~g~g~~~i~~~p~~~--------~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 429 WKILDSFPALGGGSLFIKTHPNSQ--------YLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCS--------EEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred CEEEEEEecCCCCCEEEEeCCCCC--------eEEEecCCCCCcccCceEEEEECCc
Confidence 455666664433222244555432 233333 11 35888888863
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.20 E-value=1.7e-09 Score=93.12 Aligned_cols=183 Identities=14% Similarity=0.052 Sum_probs=122.7
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcc-cc
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERH-NS 231 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h-~~ 231 (362)
.+++|++++.|+.|.+||.++++.+..+.......+.++++.|+|+++. +.++.|..||. +++...++ ..+ ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~----~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNI----AAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEE----ECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEE----cCCCCc
Confidence 4678999999999999999999988777532214678899999999666 56888999998 56533322 222 34
Q ss_pred ceeEEEEecCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeec----CccceeEEEEE--eCCeEEEeeCCCcEEEeeCC
Q 044557 232 GINALALSCDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALR----GHTKSILCMAV--VSDLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~----~h~~~v~~~~~--~~~~~~s~s~D~~i~~W~~~ 304 (362)
.+.++.+.|+|+++++.+. ++.|..+|.. ++......+. ++......+++ .++++++.+.++.|..|+..
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~---Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNMK---GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECTT---SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeCC---CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 6788899999999999887 7777777652 2221111111 22222333344 35689999999999999853
Q ss_pred CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 305 DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 305 ~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
++.+.++... ..+.++.+.++ +.+|++++.++.|..+|..
T Consensus 155 ---G~~~w~~~~~-~~~~~~~~~~~---------g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 155 ---GQLLNSVKLS-GTPFSSAFLDN---------GDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp ---SCEEEEEECS-SCCCEEEECTT---------SCEEEECBTTSEEEEECTT
T ss_pred ---CCEEEEEECC-CCccceeEcCC---------CCEEEEeCCCCeEEEEeCc
Confidence 4556666543 33445555433 3467777777777777654
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.19 E-value=5.2e-08 Score=84.96 Aligned_cols=198 Identities=10% Similarity=0.060 Sum_probs=125.3
Q ss_pred CceeEEEEecC-CCEEEEEECCCcEEEEECCCceEEEe-eec---cCcccEEEEEEcCCCcEEEEeC-C-----------
Q 044557 143 DAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFKCLES-ITN---AHDDAINAVALSDDGDVYTGSA-D----------- 205 (362)
Q Consensus 143 ~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~---~h~~~v~~v~~~~~~~~~s~~~-d----------- 205 (362)
..+.+++++++ ++++++. .++.|.+||.. ++.... ... .....+.++++.++|.++.++. +
T Consensus 71 ~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp CCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 45788999999 6655544 45589999988 654332 111 1123478999999998665543 3
Q ss_pred ----CeEEEEeCCCCCCcceeehhhhccccceeEEEEe----cCCCEEEEE-cCCCcEEEEeccCCCCcE---EEEEeec
Q 044557 206 ----KKIKVWRRSPGNKKHSLVDVLERHNSGINALALS----CDGSVLYSG-ACDRSIIVWEKEEDDGNI---LVVGALR 273 (362)
Q Consensus 206 ----g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s----~~~~~l~s~-~~d~~i~~wd~~~~~~~~---~~~~~~~ 273 (362)
+.|..|+.. +. .... ..+......++++ |+++.|+.+ ..++.|.+|+.... ... .....+.
T Consensus 149 ~~~~~~l~~~~~~-g~-~~~~----~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~ 221 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQ-MIQV----DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP-AKIENKKVWGHIP 221 (314)
T ss_dssp SSSCEEEEEECTT-SC-EEEE----EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET-TEEEEEEEEEECC
T ss_pred cCCCCeEEEECCC-CC-EEEe----ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC-CccccceEEEECC
Confidence 456666654 32 1111 1223345788999 999766555 56789999997621 111 1223344
Q ss_pred Ccc-ceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCc
Q 044557 274 GHT-KSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCD 350 (362)
Q Consensus 274 ~h~-~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~ 350 (362)
++. ..+..+++++ .+.++...++.|.+|+.. +...+..+..+...+.+++|++++. .+.++...++.
T Consensus 222 ~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~i~~~~dg~--------~l~v~~~~~~~ 291 (314)
T 1pjx_A 222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD--GGQPKMRIRCPFEKPSNLHFKPQTK--------TIFVTEHENNA 291 (314)
T ss_dssp CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT--CBSCSEEEECSSSCEEEEEECTTSS--------EEEEEETTTTE
T ss_pred CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC--CCcEeEEEeCCCCCceeEEECCCCC--------EEEEEeCCCCe
Confidence 443 5567788864 367777788899999853 1333455566667899999865432 35666677789
Q ss_pred EEEEecccC
Q 044557 351 IKVWQISFP 359 (362)
Q Consensus 351 i~~W~~~~~ 359 (362)
|..|++..+
T Consensus 292 l~~~~~~~~ 300 (314)
T 1pjx_A 292 VWKFEWQRN 300 (314)
T ss_dssp EEEEECSSC
T ss_pred EEEEeCCCC
Confidence 999998643
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.19 E-value=2.1e-09 Score=105.76 Aligned_cols=199 Identities=17% Similarity=0.066 Sum_probs=123.5
Q ss_pred CceeEEEEecCCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC----------
Q 044557 143 DAVSALALTKDETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADK---------- 206 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg---------- 206 (362)
..+..++|+|||++||.++.+ ..|++||+.+++.+.... +...+..++|+|+ + ++.++.|+
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 356789999999998877654 369999999988755321 2222356889999 6 66665544
Q ss_pred ----eEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC-----cEEEEeccCCCCc-EEEEEeecCcc
Q 044557 207 ----KIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR-----SIIVWEKEEDDGN-ILVVGALRGHT 276 (362)
Q Consensus 207 ----~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-----~i~~wd~~~~~~~-~~~~~~~~~h~ 276 (362)
.|.+|++.++.....++.....+...+..+.|+|||++|+..+.++ .|++||+.++... ...+ ..+.
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l---~~~~ 316 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL---IPDL 316 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE---ECSS
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe---cCCC
Confidence 3889998765432233332233444578899999999998877554 7999998764212 2222 2233
Q ss_pred ceeE-EEEEeCCeEEEeeC----CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcE
Q 044557 277 KSIL-CMAVVSDLVCSGSA----DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDI 351 (362)
Q Consensus 277 ~~v~-~~~~~~~~~~s~s~----D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i 351 (362)
..+. .+...++.++..+. ++.|.+|+...........+..+...+..+++. +++++++...|+..
T Consensus 317 ~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~----------~~~lv~~~~~dg~~ 386 (741)
T 1yr2_A 317 KAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA----------GNRLFASYIHDAKS 386 (741)
T ss_dssp SSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE----------BTEEEEEEEETTEE
T ss_pred CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE----------CCEEEEEEEECCEE
Confidence 2222 23345665555554 344888885432112222334445556566654 23678899999998
Q ss_pred EEEecc
Q 044557 352 KVWQIS 357 (362)
Q Consensus 352 ~~W~~~ 357 (362)
+||.+.
T Consensus 387 ~l~~~~ 392 (741)
T 1yr2_A 387 QVLAFD 392 (741)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888664
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.18 E-value=2.7e-07 Score=79.61 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=127.8
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec-cCcccEEEEEEcCCCcEEEE-eCCCeEEEEeCCCCCCcc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN-AHDDAINAVALSDDGDVYTG-SADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~s~-~~dg~i~iw~~~~~~~~~ 220 (362)
..+.+++++++++++++...++.|..|+.. ++. ..+.. .....+..+++.++|.++.+ ..++.|.+||. ++...
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~- 132 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR- 132 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-
Confidence 456789999999988887778899999976 332 22221 23456889999999986554 46789999987 44321
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i 298 (362)
.. ........+..+++.++|..+++...++.|..||. ++. .... ....+...+..+++.++ +.++...++.|
T Consensus 133 ~~--~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 206 (299)
T 2z2n_A 133 EY--ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD--ITEF-KIPTPASGPVGITKGNDDALWFVEIIGNKI 206 (299)
T ss_dssp EE--ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC--EEEE-ECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred Ee--cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc--EEEe-eCCCCCCcceeEEECCCCCEEEEccCCceE
Confidence 11 11223456789999999988887777889999997 322 2221 23334455778888653 66666668889
Q ss_pred EEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 299 RIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 299 ~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+|+. ...... ..+..+...+.++++.+++ .+.++...++.|..||.
T Consensus 207 ~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g---------~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 207 GRITT-SGEITE-FKIPTPNARPHAITAGAGI---------DLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEECT-TCCEEE-EECSSTTCCEEEEEECSTT---------CEEEEETTTTEEEEEET
T ss_pred EEECC-CCcEEE-EECCCCCCCceeEEECCCC---------CEEEeccCCceEEEECC
Confidence 99986 333222 1233456678888886543 34555556778888886
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.17 E-value=2.9e-08 Score=87.65 Aligned_cols=243 Identities=10% Similarity=0.038 Sum_probs=145.4
Q ss_pred cceeeeEecC-cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEE-cCceeEEEe-cCCcEEEEecC
Q 044557 20 SYVSSLALAG-KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVV-LADKLFSAH-QDHKIRVWKIN 96 (362)
Q Consensus 20 ~~V~~l~~~~-~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~l~s~~-~dg~i~~w~~~ 96 (362)
.....+.+++ +..++...+++|.+||..+... ..... .......+.+ ..++++.+. .++.|.+||..
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~--~~~i~--------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~ 113 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKE--VGRIT--------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK 113 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCE--EEEEE--------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETT
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEE--EEEcC--------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECC
Confidence 3456777764 4556666689999999876431 11111 1123445555 345677776 78999999986
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-CCCcEEEEECCCce
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-WDRTIKIWRTSDFK 175 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~ 175 (362)
+.... ..++.... .+.......+++ .+++++++.. .++.|.++|..+++
T Consensus 114 t~~~~-------~~i~~g~~----------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 114 TYEIT-------GYIECPDM----------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp TTEEE-------EEEECTTC----------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE
T ss_pred CCeEE-------EEEEcCCc----------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe
Confidence 54311 01110000 000112334555 3444444433 48999999999998
Q ss_pred EEEeeeccCcccEEEEEEcCCCcEEEEeC-C----------CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCE
Q 044557 176 CLESITNAHDDAINAVALSDDGDVYTGSA-D----------KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSV 244 (362)
Q Consensus 176 ~~~~~~~~h~~~v~~v~~~~~~~~~s~~~-d----------g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 244 (362)
.+..+..+ .....++++|+|+++.++. + +.|.++|..++.....+ . .. .......++|+|+++.
T Consensus 164 ~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~-~-~~-~g~~p~~la~~~d~~~ 238 (328)
T 3dsm_A 164 VVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF-K-FK-LGDWPSEVQLNGTRDT 238 (328)
T ss_dssp EEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE-E-CC-TTCCCEEEEECTTSCE
T ss_pred EEEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE-e-cC-CCCCceeEEEecCCCE
Confidence 87766532 3456788999998655443 3 78999998776422221 1 10 1235788999999999
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEEe----eCCCcEEEeeCCCCceeeeeEe
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCSG----SADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s~----s~D~~i~~W~~~~~~~~~~~~l 314 (362)
|+.+.. .|.+||..+.+.. ....+..+......+++++ .++++. ..++.|.+|+.. ++.+.++
T Consensus 239 lyv~~~--~v~~~d~~t~~~~--~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~---g~~~~~i 308 (328)
T 3dsm_A 239 LYWINN--DIWRMPVEADRVP--VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ---GKLIDEF 308 (328)
T ss_dssp EEEESS--SEEEEETTCSSCC--SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT---CCEEEEE
T ss_pred EEEEcc--EEEEEECCCCcee--eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC---CCEEEEE
Confidence 998865 8999998754321 0011121234567888875 266666 678999999853 3444444
No 200
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=2e-09 Score=96.52 Aligned_cols=182 Identities=7% Similarity=0.036 Sum_probs=118.3
Q ss_pred ceeeeEec--CcEEEEecCCCeEEEeecCCCCccc---ceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEec
Q 044557 21 YVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSEL---DQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKI 95 (362)
Q Consensus 21 ~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~ 95 (362)
.+..|+++ ..++++|+.|+ +++|+++...... ...+. ...... ... +..+.+.++.|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~-~~~~~~-lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLT-FKWEKE-IPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC-CSEEEE-CTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccccc-ceEEee-CCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 57777774 56889998874 5569865321000 00010 111112 234 88888844457776 8999999998
Q ss_pred CCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCce
Q 044557 96 NNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFK 175 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 175 (362)
....... ....|...+.++.+.+. .+++++.||.|.+||+.++.
T Consensus 114 ~sl~~~~----------------------------------~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~ 157 (388)
T 1xip_A 114 EELSEFR----------------------------------TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS 157 (388)
T ss_dssp SSTTCEE----------------------------------EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred hhhhccC----------------------------------ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc
Confidence 7543100 01123344555555443 28889999999999999876
Q ss_pred EEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCC--ccee--ehhhh---ccccceeEEEEecCCCEEEEE
Q 044557 176 CLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNK--KHSL--VDVLE---RHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 176 ~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~--~~~~--~~~~~---~h~~~v~~i~~s~~~~~l~s~ 248 (362)
... +...|.+++|+|+| ++.|..||++++|+.+.... ...+ ...+. .|...|.+|.|.+++.++++-
T Consensus 158 ~~~-----~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 158 TKQ-----LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEE-----EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ccc-----ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 543 34589999999999 78899999999998876542 1111 11122 367889999999999988864
Q ss_pred c
Q 044557 249 A 249 (362)
Q Consensus 249 ~ 249 (362)
+
T Consensus 232 ~ 232 (388)
T 1xip_A 232 G 232 (388)
T ss_dssp E
T ss_pred c
Confidence 3
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.14 E-value=1e-06 Score=75.98 Aligned_cols=259 Identities=12% Similarity=0.085 Sum_probs=156.1
Q ss_pred cCccceeeeEec--CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEec-CCcEEE
Q 044557 17 GHNSYVSSLALA--GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQ-DHKIRV 92 (362)
Q Consensus 17 gH~~~V~~l~~~--~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~-dg~i~~ 92 (362)
.....+.+|.++ ++..++...++.|.+||.. .. .. .+... .....+..+.+.++ .++.+.. ++.|..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~--~~-~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR--IK-EFEVP-----TPDAKVMCLIVSSLGDIWFTENGANKIGK 87 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--EE-EEECS-----STTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc--eE-EEECC-----CCCCcceeEEECCCCCEEEEecCCCeEEE
Confidence 445677888884 6677777678999999865 21 11 11100 01134556666543 3555544 677888
Q ss_pred EecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECC
Q 044557 93 WKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTS 172 (362)
Q Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 172 (362)
|+.+ +.. ... ..+ .....+.++++.++++++++...++.|..++..
T Consensus 88 ~d~~-g~~-----~~~-~~~---------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 133 (300)
T 2qc5_A 88 LSKK-GGF-----TEY-PLP---------------------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD 133 (300)
T ss_dssp ECTT-SCE-----EEE-ECS---------------------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred ECCC-CCe-----EEe-cCC---------------------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence 8765 221 000 000 012346788899999988877778899999987
Q ss_pred CceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC
Q 044557 173 DFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD 251 (362)
Q Consensus 173 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d 251 (362)
++............+..+++.+++.++.+. .++.|..++. ++... .. ....+...+..+++.++|...++....
T Consensus 134 -g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~--~~~~~~~~~~~i~~d~~g~l~v~~~~~ 208 (300)
T 2qc5_A 134 -GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE-EY--PLPTNAAAPVGITSGNDGALWFVEIMG 208 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EE--ECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred -CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-Ee--eCCCCCCCcceEEECCCCCEEEEccCC
Confidence 544322222234568899999999866554 4788999987 43321 11 112234567889999999877777777
Q ss_pred CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 252 RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 252 ~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
+.|..|+. .+ ..... ....+...+.+++++++ +.++...++.|..|+. ..... ...+......+.++++.++
T Consensus 209 ~~i~~~~~-~g--~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~ 282 (300)
T 2qc5_A 209 NKIGRITT-TG--EISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKD 282 (300)
T ss_dssp TEEEEECT-TC--CEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTT
T ss_pred CEEEEEcC-CC--cEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCC
Confidence 88999987 22 22221 23334556788888643 5666666789999985 22222 1123334455777776543
No 202
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.13 E-value=1.3e-09 Score=98.40 Aligned_cols=186 Identities=9% Similarity=-0.026 Sum_probs=114.8
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEE-------------------EEEcCCCc-EEEE-----
Q 044557 148 LALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINA-------------------VALSDDGD-VYTG----- 202 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~-------------------v~~~~~~~-~~s~----- 202 (362)
+.|+||++.|+.++.++.|.+||+.+++...... .+...... +.++|++. ++..
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe-cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 5789999999999999999999998876544332 23322222 34567775 3322
Q ss_pred eCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec-CCCEEEEEcCC------CcEEEEeccCCCCcEEEEEeecCc
Q 044557 203 SADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACD------RSIIVWEKEEDDGNILVVGALRGH 275 (362)
Q Consensus 203 ~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~h 275 (362)
..+..|.+||+.++... .+ ..+...+..+.|+| ++..|+..+.+ ..|.+|++.... ... +..+
T Consensus 165 ~~~~~l~~~d~~~g~~~-~~----~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~---l~~~ 234 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELE-VI----HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRK---IKEH 234 (396)
T ss_dssp CCCEEEEEEETTTCCEE-EE----EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEE---SSCC
T ss_pred CCcceEEEEECCCCcEE-ee----ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeE---eecc
Confidence 45678999999876422 11 13566788999999 78877765543 358888876432 111 2222
Q ss_pred --cceeEEEEEeCC--eEEEeeCC-----CcEEEeeCCCCceeeeeEecCCCCcEEEEEeee-cCCccCCCCCceEEEec
Q 044557 276 --TKSILCMAVVSD--LVCSGSAD-----KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAI-DNDRCDSSDTSYLVCSG 345 (362)
Q Consensus 276 --~~~v~~~~~~~~--~~~s~s~D-----~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~~~~~~~~~~~~l~s~ 345 (362)
...+..+.|+++ .++.++.+ +.|.+|+........+..+.+ .. ++|+| ++ .+|+.+
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg---------~~l~~~ 300 (396)
T 3c5m_A 235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDG---------SLMVGD 300 (396)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSS---------SEEEEE
T ss_pred CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCC---------ceEEEe
Confidence 235677888764 56555443 449999965443333333332 22 67776 53 345443
Q ss_pred C----------------CCCcEEEEeccc
Q 044557 346 S----------------LDCDIKVWQISF 358 (362)
Q Consensus 346 s----------------~D~~i~~W~~~~ 358 (362)
+ .+..|.+||+..
T Consensus 301 ~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 301 GCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp ECCC----------CCCCCCEEEEEETTT
T ss_pred cCCcceeeccccccccCCCCcEEEEeccc
Confidence 2 347899999853
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.13 E-value=3e-08 Score=86.52 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=126.6
Q ss_pred CceeEEEEecCCCEEEE-------EECCCcEEEEECCCceEEEeee---ccCcccEEEEEEcCC-CcEEEEeCCCeEEEE
Q 044557 143 DAVSALALTKDETLLYS-------VSWDRTIKIWRTSDFKCLESIT---NAHDDAINAVALSDD-GDVYTGSADKKIKVW 211 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s-------~s~d~~i~iwd~~~~~~~~~~~---~~h~~~v~~v~~~~~-~~~~s~~~dg~i~iw 211 (362)
....+++|+++++++++ +..++.|.+||..+++...... ..+...+.+++++++ +.++.++..+.|.+|
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence 45678999999988887 5778999999987776533211 124456889999999 887777666689999
Q ss_pred eCCCCCCccee-ehhhh-ccccceeEEEEecCCCEEEEEcCC---------------CcEEEEeccCCCCcEEEEEeecC
Q 044557 212 RRSPGNKKHSL-VDVLE-RHNSGINALALSCDGSVLYSGACD---------------RSIIVWEKEEDDGNILVVGALRG 274 (362)
Q Consensus 212 ~~~~~~~~~~~-~~~~~-~h~~~v~~i~~s~~~~~l~s~~~d---------------~~i~~wd~~~~~~~~~~~~~~~~ 274 (362)
|.. +... .+ ..... .....+..++++++|..+++...+ +.|..|+.. ...... ..
T Consensus 98 d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~~---~~ 169 (314)
T 1pjx_A 98 QTD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD---GQMIQV---DT 169 (314)
T ss_dssp ETT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT---SCEEEE---EE
T ss_pred eCC-CCEE-EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC---CCEEEe---cc
Confidence 987 4321 11 11111 122458899999999888877665 456666653 222221 11
Q ss_pred ccceeEEEEEe----CC---eEEEeeCCCcEEEeeCC-CCce---eeeeEecCCC-CcEEEEEeeecCCccCCCCCceEE
Q 044557 275 HTKSILCMAVV----SD---LVCSGSADKTIRIWRGI-DRNY---TCLAVLEGHR-GPVKCLAAAIDNDRCDSSDTSYLV 342 (362)
Q Consensus 275 h~~~v~~~~~~----~~---~~~s~s~D~~i~~W~~~-~~~~---~~~~~l~~h~-~~v~~~~~~~~~~~~~~~~~~~~l 342 (362)
+......++++ ++ ++++.+.++.|.+|+.. .... .....+.++. ..+..+++.+++ .++
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G---------~l~ 240 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN---------NLL 240 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC---------CEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC---------CEE
Confidence 22334566777 55 34555678899999853 1111 1233444554 567778776543 456
Q ss_pred EecCCCCcEEEEecc
Q 044557 343 CSGSLDCDIKVWQIS 357 (362)
Q Consensus 343 ~s~s~D~~i~~W~~~ 357 (362)
++...++.|.+||..
T Consensus 241 v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 241 VANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEETTTEEEEECTT
T ss_pred EEEcCCCEEEEEcCC
Confidence 666667899999875
No 204
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.06 E-value=1e-08 Score=99.99 Aligned_cols=200 Identities=16% Similarity=0.171 Sum_probs=121.8
Q ss_pred cCceeEEEEecCCCEEEE-----EECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC---------
Q 044557 142 VDAVSALALTKDETLLYS-----VSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADK--------- 206 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s-----~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg--------- 206 (362)
...+..++|+||+++||- |+++..|++||+.+++.+.... +......++|+ ||+ |+.+..+.
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 345778899999998873 3334579999999988654321 11112467899 886 76666653
Q ss_pred ----eEEEEeCCCCCCcceeehhhhc-cccceeEEEEecCCCEEEEEc----CCCcEEEEeccCCCCcEEEEEeecCccc
Q 044557 207 ----KIKVWRRSPGNKKHSLVDVLER-HNSGINALALSCDGSVLYSGA----CDRSIIVWEKEEDDGNILVVGALRGHTK 277 (362)
Q Consensus 207 ----~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~~~~~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~h~~ 277 (362)
.|++|++.+......++..... |...+..+.|+|||++|+... .++.|+++|+.++......+ ..+..
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l---~~~~~ 281 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV---QGDLD 281 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE---ECSSS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE---eCCCC
Confidence 4999998765433233333333 445567899999999886443 23589999987654333322 23333
Q ss_pred eeEE-EEEeCC-eEEEeeCC---CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCC--c
Q 044557 278 SILC-MAVVSD-LVCSGSAD---KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDC--D 350 (362)
Q Consensus 278 ~v~~-~~~~~~-~~~s~s~D---~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~--~ 350 (362)
.... +...++ +++.+..| +.|..++...........+..|...+. .|+++++ +++++...|+ .
T Consensus 282 ~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~--------~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 282 ADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG--------YLFAEYMVDATAR 351 (693)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT--------EEEEEEEETTEEE
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC--------EEEEEEEECCeeE
Confidence 3333 334445 44555444 567777754322211345667777765 7777654 3555555565 5
Q ss_pred EEEEecc
Q 044557 351 IKVWQIS 357 (362)
Q Consensus 351 i~~W~~~ 357 (362)
|++|++.
T Consensus 352 l~~~d~~ 358 (693)
T 3iuj_A 352 VEQFDYE 358 (693)
T ss_dssp EEEECTT
T ss_pred EEEEECC
Confidence 7788764
No 205
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.06 E-value=5.8e-08 Score=91.94 Aligned_cols=191 Identities=10% Similarity=0.080 Sum_probs=127.9
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCC--CCCCcceeehhhh
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRS--PGNKKHSLVDVLE 227 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~--~~~~~~~~~~~~~ 227 (362)
+|.+.++++...+++|.++|..+++.+..+..+ ..+..+.|+|+|+ +++++.|+.|.+||+. +.... ..+.
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v----~~i~ 237 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV----AEIK 237 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE----EEEE
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe----EEEe
Confidence 455567777888999999999999888877533 3567899999997 7788899999999985 44322 2222
Q ss_pred ccccceeEEEEe----cCCCEEEEEcC-CCcEEEEeccCCCCcEEEEEeec-------Cccc-eeEEEEEeC---CeEEE
Q 044557 228 RHNSGINALALS----CDGSVLYSGAC-DRSIIVWEKEEDDGNILVVGALR-------GHTK-SILCMAVVS---DLVCS 291 (362)
Q Consensus 228 ~h~~~v~~i~~s----~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~-------~h~~-~v~~~~~~~---~~~~s 291 (362)
. ......++|+ |||+++++++. +++|.++|..+.+. ...+.... .|.. .+..+..+. .++++
T Consensus 238 ~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 238 I-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp C-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred c-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 2 2235689999 69999887775 58999999776432 22221110 1222 455665553 36777
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
...+|.|.+++........+..+ .......++.|+|++. +++++...+++|.++|+..
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr--------~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR--------YFITAANARNKLVVIDTKE 373 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC--------EEEEEEGGGTEEEEEETTT
T ss_pred ecCCCeEEEEecCCCccceeeee-eccccccCceECCCCC--------EEEEEeCCCCeEEEEECCC
Confidence 88889999998654332223333 2344566777766543 4566666778899999863
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.00 E-value=1.3e-07 Score=86.01 Aligned_cols=196 Identities=12% Similarity=0.095 Sum_probs=125.9
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC--eEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADK--KIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg--~i~iw~~~~~~~~ 219 (362)
.....++++++++++++...++.|++||..++....... .. .... ++|++++. ++++..++ .|.+++...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~-~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP-GF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE-TC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec-cC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 456789999999988877778999999998876654333 22 2233 89999987 66776655 7888887654321
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe--ecCcccee-E-EEEEeCC---eEEEe
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA--LRGHTKSI-L-CMAVVSD---LVCSG 292 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~h~~~v-~-~~~~~~~---~~~s~ 292 (362)
..+-.........+..++++|++..|+.+..++.|+.||..... ...... ..++...- . .++++++ ++++-
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 11100001134557789999966666667778899999987543 222211 12222222 2 7888762 67777
Q ss_pred eCCCcEEEeeCCCCceeeeeEecCCC---------------CcEEEEEeeecCCccCCCCCceEEEecC-CCCcEEEEec
Q 044557 293 SADKTIRIWRGIDRNYTCLAVLEGHR---------------GPVKCLAAAIDNDRCDSSDTSYLVCSGS-LDCDIKVWQI 356 (362)
Q Consensus 293 s~D~~i~~W~~~~~~~~~~~~l~~h~---------------~~v~~~~~~~~~~~~~~~~~~~~l~s~s-~D~~i~~W~~ 356 (362)
+.++.|+.|+.... +..+.++. .....+++++++ .++++-+ .++.|+.|++
T Consensus 286 ~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG---------~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 286 QNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG---------NFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp TTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC---------CEEEEETTTTCEEEEEET
T ss_pred CCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC---------CEEEEeCCCCCEEEEEEC
Confidence 78899999985332 22333332 346778886543 4566666 7889999984
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.00 E-value=9.8e-07 Score=77.70 Aligned_cols=175 Identities=15% Similarity=0.032 Sum_probs=108.3
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc---CcccEEEEEEcCCCcEEEEeC-------CCeEEEEe
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA---HDDAINAVALSDDGDVYTGSA-------DKKIKVWR 212 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~s~~~-------dg~i~iw~ 212 (362)
..+.+++++|+++++++. . ..|.+||..+++........ ....+..++++|+|.++.++. .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 457889999999877754 3 45999998877643222111 123588999999998665543 23454454
Q ss_pred CCCCCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEecc--CC-C-CcEEEEEeecCccceeEEEEEeC-
Q 044557 213 RSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKE--ED-D-GNILVVGALRGHTKSILCMAVVS- 286 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~--~~-~-~~~~~~~~~~~h~~~v~~~~~~~- 286 (362)
++. ...+ ..+......++|+|||+.|+.+ +.++.|.+|+.. ++ . ........+.........+.+++
T Consensus 168 --~g~-~~~~----~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~ 240 (326)
T 2ghs_A 168 --KGK-VTKL----FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE 240 (326)
T ss_dssp --TTE-EEEE----EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT
T ss_pred --CCc-EEEe----eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC
Confidence 332 1111 1222346789999999877554 567899999975 32 1 11122223333344556777764
Q ss_pred -CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee-ec
Q 044557 287 -DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA-ID 329 (362)
Q Consensus 287 -~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~-~~ 329 (362)
.+.++...++.|.+|+.. ...+..+..+...+.+++|. ++
T Consensus 241 G~lwva~~~~~~v~~~d~~---g~~~~~i~~~~~~~~~~af~g~d 282 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDTD---GNHIARYEVPGKQTTCPAFIGPD 282 (326)
T ss_dssp SCEEEEEETTTEEEEECTT---CCEEEEEECSCSBEEEEEEESTT
T ss_pred CCEEEEEeCCCEEEEECCC---CCEEEEEECCCCCcEEEEEecCC
Confidence 356666667889999852 34455666667789999997 44
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.99 E-value=2.9e-06 Score=73.08 Aligned_cols=195 Identities=11% Similarity=0.029 Sum_probs=125.8
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcce
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~ 221 (362)
..+.+++++++++++++...++.|..||.. ++............+.++++.++|.++.+. .++.|..++.. +... .
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~ 138 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-E 138 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-E
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-E
Confidence 356788899999988877778899999987 544322211233568899999999866554 47899999876 4321 1
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC--eEEEeeCCCcEE
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD--LVCSGSADKTIR 299 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~s~s~D~~i~ 299 (362)
. .+......+..+++.++|+..++...++.|..++. .+. .... ....+...+..+.+.++ +.++....+.|.
T Consensus 139 ~--~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 139 Y--DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK--LEEY-PLPTNAAAPVGITSGNDGALWFVEIMGNKIG 212 (300)
T ss_dssp E--ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred c--cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc--EEEe-eCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence 1 11223456788999999997777766788999987 322 2221 23334456778888643 566666677899
Q ss_pred EeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 300 IWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+|+. ...... ..+..+...+.++++.+++ .+.++...++.|..|+..
T Consensus 213 ~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g---------~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 213 RITT-TGEISE-YDIPTPNARPHAITAGKNS---------EIWFTEWGANQIGRITND 259 (300)
T ss_dssp EECT-TCCEEE-EECSSTTCCEEEEEECSTT---------CEEEEETTTTEEEEECTT
T ss_pred EEcC-CCcEEE-EECCCCCCCceEEEECCCC---------CEEEeccCCCeEEEECCC
Confidence 9985 222221 1233455678888886543 345555556788888763
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.98 E-value=4e-07 Score=82.89 Aligned_cols=193 Identities=15% Similarity=0.133 Sum_probs=121.9
Q ss_pred EEEecCCCEEEEEECCC--cEEEEECCCceEEEee---eccCcccEEEEEEcC-CCcEEEEeCCCeEEEEeCCCCCCcce
Q 044557 148 LALTKDETLLYSVSWDR--TIKIWRTSDFKCLESI---TNAHDDAINAVALSD-DGDVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~---~~~h~~~v~~v~~~~-~~~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
++++|+++.|+++..++ .|.+++.........+ .......+.+++++| ++.++.+..++.|..||..++.. .
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~--~ 253 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV--T 253 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE--E
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE--E
Confidence 88999999999888766 7888887654332222 111344567899999 67777777889999999876541 1
Q ss_pred eehh--hhcccc--ceeEEEEecC-CCEEEEEcCCCcEEEEeccCCCCcEEEEEee--cCc---------cceeEEEEEe
Q 044557 222 LVDV--LERHNS--GINALALSCD-GSVLYSGACDRSIIVWEKEEDDGNILVVGAL--RGH---------TKSILCMAVV 285 (362)
Q Consensus 222 ~~~~--~~~h~~--~v~~i~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~h---------~~~v~~~~~~ 285 (362)
.... ...+.. |...++|+|+ +..+++-...+.|+.|+.... .....+.. .+. ......++++
T Consensus 254 ~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d 331 (409)
T 3hrp_A 254 LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVD 331 (409)
T ss_dssp EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC
T ss_pred EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe
Confidence 2100 111111 1238999995 556666677889999987532 11111110 010 1235678887
Q ss_pred CC--eEEEee-CCCcEEEeeCCCCceeeeeEecCC---------------CCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 286 SD--LVCSGS-ADKTIRIWRGIDRNYTCLAVLEGH---------------RGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 286 ~~--~~~s~s-~D~~i~~W~~~~~~~~~~~~l~~h---------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
++ ++++-+ .++.|+.|+..... +.++.++ -....++++.++ +.++++-..
T Consensus 332 ~dG~lyvad~~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~---------g~lyVad~~ 399 (409)
T 3hrp_A 332 EDGNFYIVDGFKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE---------GGYWIAEAW 399 (409)
T ss_dssp TTCCEEEEETTTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS---------SEEEEEEST
T ss_pred CCCCEEEEeCCCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC---------CCEEEEECC
Confidence 54 777777 88999999843322 3344444 245788888654 356777777
Q ss_pred CCcEEEEec
Q 044557 348 DCDIKVWQI 356 (362)
Q Consensus 348 D~~i~~W~~ 356 (362)
.+.||.+++
T Consensus 400 n~~Ir~i~~ 408 (409)
T 3hrp_A 400 GKAIRKYAV 408 (409)
T ss_dssp TCEEEEEEE
T ss_pred CCeEEEEEe
Confidence 888888765
No 210
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.90 E-value=1.7e-06 Score=77.67 Aligned_cols=267 Identities=9% Similarity=0.037 Sum_probs=147.7
Q ss_pred eEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCccc
Q 044557 25 LALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQK 104 (362)
Q Consensus 25 l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~ 104 (362)
+...+..++.++.|+.|..+|..+..... ..... ...........+.++.++.++.|..+|..+++.....
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W--~~~~~-------~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~ 169 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAW--QTKVA-------GEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTV 169 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEE--EEECS-------SCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEE--EEeCC-------CceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 34456678888889999999987644222 11110 0111122334667888888999999998765421100
Q ss_pred ceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccC
Q 044557 105 YTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH 184 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h 184 (362)
.... ... ..... ...... +..++.++.++.|..+|..+++.+-......
T Consensus 170 -----~~~~---~~~-----------------~~~~~----~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~ 218 (376)
T 3q7m_A 170 -----NLDM---PSL-----------------SLRGE----SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 218 (376)
T ss_dssp -----ECCC-------------------------CCC----CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred -----eCCC---Cce-----------------eecCC----CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence 0000 000 00000 011111 3457778889999999999887765443211
Q ss_pred ccc---------EEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 185 DDA---------INAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 185 ~~~---------v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
... +.......++.++.++.++.+..+|..+++...... ......+.. ++..|+.++.++.+.
T Consensus 219 ~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~------~~~~~~~~~--~~~~l~~~~~~g~l~ 290 (376)
T 3q7m_A 219 ATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE------LGSVNDFIV--DGNRIYLVDQNDRVM 290 (376)
T ss_dssp -----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC------CCCEEEEEE--ETTEEEEEETTCCEE
T ss_pred CCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc------CCCCCCceE--ECCEEEEEcCCCeEE
Confidence 000 000001125668888889999999998876432211 112333333 477888888999999
Q ss_pred EEeccCCCCcEEEEEeec-CccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccC
Q 044557 256 VWEKEEDDGNILVVGALR-GHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCD 334 (362)
Q Consensus 256 ~wd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~ 334 (362)
.+|..+++.. .... .....+......++.+..++.++.+..++... ++.+.........+.......
T Consensus 291 ~~d~~tG~~~----w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~t--G~~~~~~~~~~~~~~~~~~~~------ 358 (376)
T 3q7m_A 291 ALTIDGGVTL----WTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVED--GRFVAQQKVDSSGFQTEPVAA------ 358 (376)
T ss_dssp EEETTTCCEE----EEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTT--CCEEEEEECCTTCBCSCCEEE------
T ss_pred EEECCCCcEE----EeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCC--CcEEEEEecCCCcceeCCEEE------
Confidence 9998865421 1122 11122333444577888999999999999543 344444433222222111111
Q ss_pred CCCCceEEEecCCCCcEEEEe
Q 044557 335 SSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 335 ~~~~~~~l~s~s~D~~i~~W~ 355 (362)
++ .|+.++.||.|..|+
T Consensus 359 ---~~-~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 359 ---DG-KLLIQAKDGTVYSIT 375 (376)
T ss_dssp ---TT-EEEEEBTTSCEEEEE
T ss_pred ---CC-EEEEEeCCCEEEEEe
Confidence 12 366778899999886
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.89 E-value=2.1e-06 Score=74.48 Aligned_cols=229 Identities=12% Similarity=0.110 Sum_probs=133.1
Q ss_pred ccceeeeEec---CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCcEEEEe
Q 044557 19 NSYVSSLALA---GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHKIRVWK 94 (362)
Q Consensus 19 ~~~V~~l~~~---~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~i~~w~ 94 (362)
..--.+..|+ +.++++...++.|..||..+... ..+ .....+.++.+.++ .++.+. ++.|.+|+
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~--------~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d 79 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRV--------TMDAPVSSVALRQSGGYVATI-GTKFCALN 79 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEE--------ECSSCEEEEEEBTTSSEEEEE-TTEEEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEE--------eCCCceEEEEECCCCCEEEEE-CCeEEEEE
Confidence 3334455663 45677777889999999765321 111 01234566766654 355555 66788888
Q ss_pred cCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECC---------Cc
Q 044557 95 INNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWD---------RT 165 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---------~~ 165 (362)
.+.+.. ..+...... .....+..++++|+|+++++...+ ..
T Consensus 80 ~~~g~~-----~~~~~~~~~-------------------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 80 WKEQSA-----VVLATVDND-------------------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp TTTTEE-----EEEEECCTT-------------------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCCCcE-----EEEEecCCC-------------------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 754321 111111000 011246788999999977755322 33
Q ss_pred EEEEECCC-ceEEEeeeccCcccEEEEEEcCCCc-E-EEEeCCCeEEEEeCC--CCCCc-ceeehhhhccccceeEEEEe
Q 044557 166 IKIWRTSD-FKCLESITNAHDDAINAVALSDDGD-V-YTGSADKKIKVWRRS--PGNKK-HSLVDVLERHNSGINALALS 239 (362)
Q Consensus 166 i~iwd~~~-~~~~~~~~~~h~~~v~~v~~~~~~~-~-~s~~~dg~i~iw~~~--~~~~~-~~~~~~~~~h~~~v~~i~~s 239 (362)
-.||.+.. ++... +. .+....+.++|+|+++ + ++.+.++.|.+|++. ++... ......+..+......+++.
T Consensus 130 ~~l~~~d~~g~~~~-~~-~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 130 GALYSLFPDHHVKK-YF-DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID 207 (297)
T ss_dssp EEEEEECTTSCEEE-EE-EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred cEEEEEECCCCEEE-Ee-eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence 45665543 33222 22 2334568899999996 4 455668899999874 33211 11111222234567789999
Q ss_pred cCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-C---eEEEeeCC
Q 044557 240 CDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-D---LVCSGSAD 295 (362)
Q Consensus 240 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~---~~~s~s~D 295 (362)
++|.+.++....+.|..||..+++ .+..+..+...+.+++|.+ + +++|...+
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~----~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGK----RLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCC----EEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCCCEEEEEcCCCEEEEEcCCCce----EEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 999877777778889999986533 2334455556789999973 2 44554443
No 212
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.87 E-value=1e-09 Score=98.75 Aligned_cols=188 Identities=15% Similarity=0.127 Sum_probs=95.5
Q ss_pred EcCceeEEEecCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCC
Q 044557 76 VLADKLFSAHQDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDET 155 (362)
Q Consensus 76 ~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 155 (362)
+.++.+++++.|+.|..||..+++.... . . . +.+.+..+..++.
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~-------~----------------------~------~-~~~~s~p~~~~g~ 50 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWT-------L----------------------K------E-DPVLQVPTHVEEP 50 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEE-------E----------------------E------C-CCSCCCC-----C
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEE-------e----------------------c------C-CCceecceEcCCC
Confidence 3467799999999999999877652110 0 0 0 1222223345677
Q ss_pred EEEEEECCCcEEEEECCCceEEEeeeccCcccEE-EEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcccccee
Q 044557 156 LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAIN-AVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGIN 234 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~ 234 (362)
.+++++.|+.|+.||.++++.+..+.......+. +..+..++.+++++.|+.|..||..+++..... ..+.
T Consensus 51 ~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~----~~~~---- 122 (369)
T 2hz6_A 51 AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTL----SSAF---- 122 (369)
T ss_dssp CEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------
T ss_pred EEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEe----cCCC----
Confidence 7777889999999999888765544321111110 011123556788889999999999988654322 1121
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC-----CeEEEeeCCCcEEEeeCCCCcee
Q 044557 235 ALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS-----DLVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 235 ~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
...++|++..+++++.|+.|+.||..+++...... ... .....+.+ +.++.++.|+.|+.||... ++
T Consensus 123 ~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t--G~ 194 (369)
T 2hz6_A 123 ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT--YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES--GD 194 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSSSCCCEEE--EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT--CC
T ss_pred cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe--ccc----ccCccccCCccccceEEEECCCCEEEEEECCC--Cc
Confidence 23456788999999999999999998765332211 111 11122233 5677889999999999543 34
Q ss_pred eeeEec
Q 044557 310 CLAVLE 315 (362)
Q Consensus 310 ~~~~l~ 315 (362)
.+....
T Consensus 195 ~~W~~~ 200 (369)
T 2hz6_A 195 VLWIQN 200 (369)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 444444
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.86 E-value=9.9e-07 Score=76.81 Aligned_cols=172 Identities=12% Similarity=0.050 Sum_probs=101.7
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccC----cccEEEEEEcCCCcEEE-----EeC---------
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH----DDAINAVALSDDGDVYT-----GSA--------- 204 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h----~~~v~~v~~~~~~~~~s-----~~~--------- 204 (362)
..+..++++++++++++...++.|.+|+.. ++. ..+.... ...+..+++.|+|.++. |..
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence 456789999999977666566899999976 442 2221111 12356799999998665 332
Q ss_pred ----CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC------CcEEEEeccCCCCcEEEEEee-c
Q 044557 205 ----DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD------RSIIVWEKEEDDGNILVVGAL-R 273 (362)
Q Consensus 205 ----dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~-~ 273 (362)
.+.|..||..++... .+. .....+.++|+||++.|+.+... +.|..|++.... ......+ .
T Consensus 164 ~~~~~~~v~~~d~~~g~~~-~~~-----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~ 235 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQ-RMA-----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFAS 235 (305)
T ss_dssp CSSSCEEEEEECSSSCCCE-EEE-----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEEC
T ss_pred cccCCCeEEEEcCCCCcEE-EEe-----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEE
Confidence 245777776555322 111 22345789999999988877665 689999986432 1111111 1
Q ss_pred CccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 274 GHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 274 ~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
........+.++++ .+..+..+ .|.+|+.. .+.+..+..+. .+..++|.++
T Consensus 236 ~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~---g~~~~~~~~~~-~~~~~~f~~d 287 (305)
T 3dr2_A 236 VPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSD---GQLLGHIPTPG-TASNCTFDQA 287 (305)
T ss_dssp CSSSCCCSEEECTTSCEEECCSS-EEEEECTT---SCEEEEEECSS-CCCEEEECTT
T ss_pred CCCCCCCeEEECCCCCEEEecCC-cEEEECCC---CCEEEEEECCC-ceeEEEEeCC
Confidence 11222344556533 34444444 48889742 34455555444 5788888644
No 214
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.79 E-value=4.6e-05 Score=68.25 Aligned_cols=193 Identities=10% Similarity=0.018 Sum_probs=113.7
Q ss_pred eeEEEEecCCCEEEEEEC--CCcEEEEECCCceEEEe-eeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCc
Q 044557 145 VSALALTKDETLLYSVSW--DRTIKIWRTSDFKCLES-ITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~-~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~ 219 (362)
...++++||+++|+.+.. ++.|.++| .+++.+.. +..+ . ++.+.|++. +++.+.||++.+++. +++..
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~--~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP--T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC--c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 347889999999998874 47899999 99888776 5321 1 244555552 677788999999998 65432
Q ss_pred ceee--hhhhccccce-eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC----------ccceeEEEEEeC
Q 044557 220 HSLV--DVLERHNSGI-NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG----------HTKSILCMAVVS 286 (362)
Q Consensus 220 ~~~~--~~~~~h~~~v-~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~ 286 (362)
.... ... ....++ ....+.+++..++..+..+.+.+.|+...... .+..+.- .......+.+++
T Consensus 200 ~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~--v~~~~~~~~~~~~~~~~~p~g~~~~~~s~ 276 (373)
T 2mad_H 200 GAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT--NKAPIDALSGGRKADTWRPGGWQQVAYLK 276 (373)
T ss_pred EEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce--EeeeeeecCCcccccceecCceEeEEECC
Confidence 1110 001 111222 23456676665555557888999998643211 1222210 011122244543
Q ss_pred --CeE-EEee---------CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC-CCCcEEE
Q 044557 287 --DLV-CSGS---------ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS-LDCDIKV 353 (362)
Q Consensus 287 --~~~-~s~s---------~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s-~D~~i~~ 353 (362)
+.+ ++.. .++.|-+.|. .+.+.++++. -....+.++|+|+++ ++++++. .+++|.+
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~--~t~~vv~~i~-~g~~p~~i~~s~Dg~--------~~l~v~~~~~~~V~V 345 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTG--LVGQTSSQIS-LGHDVDAISVAQDGG--------PDLYALSAGTEVLHI 345 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEEC--CCCEEEEEEE-CCCCcCeEEECCCCC--------eEEEEEcCCCCeEEE
Confidence 333 3322 1356877785 3455566664 233588899987654 2455655 5899999
Q ss_pred Eeccc
Q 044557 354 WQISF 358 (362)
Q Consensus 354 W~~~~ 358 (362)
+|++.
T Consensus 346 iD~~t 350 (373)
T 2mad_H 346 YDAGA 350 (373)
T ss_pred EECCC
Confidence 99864
No 215
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.75 E-value=2.6e-05 Score=69.76 Aligned_cols=275 Identities=8% Similarity=0.019 Sum_probs=149.4
Q ss_pred eEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEe-ecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcc
Q 044557 25 LALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAV-GKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQ 103 (362)
Q Consensus 25 l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~ 103 (362)
..+.+..++.++.++.|..+|.++.................. .......+....+.++.++.++.|..+|.++++....
T Consensus 49 p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 334577888888999999999876543221111100000000 0112233445677899999999999999876652110
Q ss_pred cceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc
Q 044557 104 KYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA 183 (362)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~ 183 (362)
..... ......... +..++.++.++.|..+|.++++.+......
T Consensus 129 -----~~~~~-----------------------------~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 129 -----TKVAG-----------------------------EALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp -----EECSS-----------------------------CCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred -----EeCCC-----------------------------ceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence 00000 000000111 346777888999999999998876554321
Q ss_pred CcccEE------EEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhcccc---ceeEEEEec--CCCEEEEEcCCC
Q 044557 184 HDDAIN------AVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNS---GINALALSC--DGSVLYSGACDR 252 (362)
Q Consensus 184 h~~~v~------~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~---~v~~i~~s~--~~~~l~s~~~d~ 252 (362)
..+. ..... ++.++.+..++.+..+|..+++.............. .+..+.-.| .+..++.++.++
T Consensus 173 --~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g 249 (376)
T 3q7m_A 173 --MPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG 249 (376)
T ss_dssp --C-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS
T ss_pred --CCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc
Confidence 1111 11112 566888888999999999887643222110000000 000000111 357788888899
Q ss_pred cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEecC-CCCcEEEEEeeecCC
Q 044557 253 SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLEG-HRGPVKCLAAAIDND 331 (362)
Q Consensus 253 ~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~-h~~~v~~~~~~~~~~ 331 (362)
.+..+|..+++.. . ... ......+....+.+..++.++.+..++... ++.+..... ....+......
T Consensus 250 ~l~~~d~~tG~~~--w--~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~---- 317 (376)
T 3q7m_A 250 NLTALDLRSGQIM--W--KRE--LGSVNDFIVDGNRIYLVDQNDRVMALTIDG--GVTLWTQSDLLHRLLTSPVLY---- 317 (376)
T ss_dssp CEEEEETTTCCEE--E--EEC--CCCEEEEEEETTEEEEEETTCCEEEEETTT--CCEEEEECTTTTSCCCCCEEE----
T ss_pred EEEEEECCCCcEE--e--ecc--CCCCCCceEECCEEEEEcCCCeEEEEECCC--CcEEEeecccCCCcccCCEEE----
Confidence 9999998765421 1 111 223445566777888888999999998543 333333321 11111111111
Q ss_pred ccCCCCCceEEEecCCCCcEEEEecc
Q 044557 332 RCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 332 ~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+ ..|+.++.+|.+..+|..
T Consensus 318 ------~-~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 318 ------N-GNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp ------T-TEEEEECTTSEEEEEETT
T ss_pred ------C-CEEEEEeCCCeEEEEECC
Confidence 1 236667778888888864
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.74 E-value=4.3e-06 Score=73.52 Aligned_cols=193 Identities=7% Similarity=-0.028 Sum_probs=114.4
Q ss_pred eEEEEecCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 146 SALALTKDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 146 ~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
.+..|+|++ .++++...++.|..||..+++... +. ....+.++++.++|.++.++.+ .|.+||..++... .+..
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~-~~~~ 126 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT-LHAE 126 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EEEC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE-EEee
Confidence 567789974 566666678999999998876432 32 2357899999999987766655 4899998766422 1211
Q ss_pred hhh-ccccceeEEEEecCCCEEEEEcCC----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCC
Q 044557 225 VLE-RHNSGINALALSCDGSVLYSGACD----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADK 296 (362)
Q Consensus 225 ~~~-~h~~~v~~i~~s~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~ 296 (362)
... .....++.++++|+|+.+++...+ +...+|.+.+ +....+ ..+......++++++ ++++.+.++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~--g~~~~~---~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK--GKVTKL---FADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET--TEEEEE---EEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC--CcEEEe---eCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 111 112468899999999976655322 2234444332 222221 112233567777754 345666778
Q ss_pred cEEEeeCC--CC-ce---eeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 297 TIRIWRGI--DR-NY---TCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 297 ~i~~W~~~--~~-~~---~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.|.+|+.. .. .. ..+..+.+......++++.++ +.+.++...++.|.+|+..
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~---------G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE---------GHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT---------SCEEEEEETTTEEEEECTT
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC---------CCEEEEEeCCCEEEEECCC
Confidence 99999863 21 11 122333334445666666433 2445555455788888764
No 217
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.71 E-value=7e-06 Score=79.60 Aligned_cols=271 Identities=13% Similarity=0.122 Sum_probs=146.4
Q ss_pred eeEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEec------CCcEEEEecCC
Q 044557 24 SLALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQ------DHKIRVWKINN 97 (362)
Q Consensus 24 ~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~------dg~i~~w~~~~ 97 (362)
.+.+.+..++.++.|+.|..+|..+..... .+...... ...........+..+.++.++. ++.|..+|..+
T Consensus 123 ~~a~~~~~v~v~~~dg~l~alD~~tG~~~W--~~~~~~~~-~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t 199 (677)
T 1kb0_A 123 GVALWKGKVYVGAWDGRLIALDAATGKEVW--HQNTFEGQ-KGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAET 199 (677)
T ss_dssp CCEEETTEEEEECTTSEEEEEETTTCCEEE--EEETTTTC-CSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT
T ss_pred CceEECCEEEEEcCCCEEEEEECCCCCEEe--eecCCcCc-CcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCC
Confidence 345567788888999999999987654322 11110000 0000111122334566776654 78999999987
Q ss_pred CCCCcccceeeeeccCCC-c--------hhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC----
Q 044557 98 QEPDHQKYTRLATLPTLG-D--------RAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR---- 164 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~---- 164 (362)
++.... ....+... . .....+.+.. .... ..........++++|++..++.++.++
T Consensus 200 G~~~W~----~~~~~~~~~~~~~~~~~~~g~~~w~~~g--~~~~-----~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 200 GERKWR----WFSVPGDPSKPFEDESMKRAARTWDPSG--KWWE-----AGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp CCEEEE----EESSCCCTTSCCSSHHHHHHHTTSCGGG--CHHH-----HCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CcEEEE----eccCCCCccccccccccccccccccccC--ceeE-----eCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 663211 00000000 0 0000000000 0000 001122234677889888888887764
Q ss_pred ---------------cEEEEECCCceEEEeeeccCc--------ccEEEEEEcCCC---c-EEEEeCCCeEEEEeCCCCC
Q 044557 165 ---------------TIKIWRTSDFKCLESITNAHD--------DAINAVALSDDG---D-VYTGSADKKIKVWRRSPGN 217 (362)
Q Consensus 165 ---------------~i~iwd~~~~~~~~~~~~~h~--------~~v~~v~~~~~~---~-~~s~~~dg~i~iw~~~~~~ 217 (362)
.|..+|.++++.+-.+...+. .....+....+| . ++.++.+|.+.++|..+++
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 499999999987765543221 111222233355 3 7788999999999999887
Q ss_pred Ccceeehhh-------hccccce------------------------eEEEEecCCCEEEEEcCC---------------
Q 044557 218 KKHSLVDVL-------ERHNSGI------------------------NALALSCDGSVLYSGACD--------------- 251 (362)
Q Consensus 218 ~~~~~~~~~-------~~h~~~v------------------------~~i~~s~~~~~l~s~~~d--------------- 251 (362)
......... .....++ ..++++|++..+++...+
T Consensus 349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~ 428 (677)
T 1kb0_A 349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ 428 (677)
T ss_dssp EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence 533221000 0000000 257889998888876432
Q ss_pred ----------------------------CcEEEEeccCCCCcEEEEEeecCccceeE--EEEEeCCeEEEeeCCCcEEEe
Q 044557 252 ----------------------------RSIIVWEKEEDDGNILVVGALRGHTKSIL--CMAVVSDLVCSGSADKTIRIW 301 (362)
Q Consensus 252 ----------------------------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~s~s~D~~i~~W 301 (362)
+.|..||+.+++... ..+ +...+. .+...++.++.++.|+.+++|
T Consensus 429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W----~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW----SVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE----EEE-ESSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEe----ecC-CCCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 678999987644221 111 111122 233345688888999999999
Q ss_pred eCCCCceeeeeEec
Q 044557 302 RGIDRNYTCLAVLE 315 (362)
Q Consensus 302 ~~~~~~~~~~~~l~ 315 (362)
|.. +++.+..+.
T Consensus 504 D~~--tG~~lw~~~ 515 (677)
T 1kb0_A 504 HAA--TGEKLWEAP 515 (677)
T ss_dssp ETT--TCCEEEEEE
T ss_pred ECC--CCceeeeee
Confidence 954 455666654
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.70 E-value=2.9e-05 Score=69.28 Aligned_cols=274 Identities=13% Similarity=0.106 Sum_probs=149.5
Q ss_pred cCcEEEEecC-----CCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe----------cCCcE
Q 044557 28 AGKFLYTGSS-----DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH----------QDHKI 90 (362)
Q Consensus 28 ~~~~l~t~s~-----Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~----------~dg~i 90 (362)
+++.++.... +++|.+.|..+... .. .+..+..+ .+.++++ .+|.++ .++.|
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v--~~-------~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRV--IG-------MIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEE--EE-------EEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeE--EE-------EEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEE
Confidence 4555555543 68999999876431 11 11223334 2666655 477665 36789
Q ss_pred EEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC--CCcEEE
Q 044557 91 RVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW--DRTIKI 168 (362)
Q Consensus 91 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--d~~i~i 168 (362)
.+||..+.+... .+ .++.. .+ . ........++++|||++|+++.. ++.|.+
T Consensus 112 sviD~~t~~v~~----~I-~v~~g-~r----------~-----------~~g~~P~~~a~spDGk~lyVan~~~~~~VsV 164 (386)
T 3sjl_D 112 EVFDPVTLLPTA----DI-ELPDA-PR----------F-----------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGV 164 (386)
T ss_dssp EEECTTTCCEEE----EE-EETTC-CC----------C-----------CBSCCGGGEEECTTSSEEEEEECSSSCEEEE
T ss_pred EEEECCCCeEEE----EE-ECCCc-cc----------c-----------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEE
Confidence 999987654211 11 00000 00 0 00112346789999999998864 689999
Q ss_pred EECCCceEEEeeeccCcccEEEEEEcCCC-cEEEEeCCCeEEEEeCCC-CCCcceeehhhhcccccee-EEEEe-cCCCE
Q 044557 169 WRTSDFKCLESITNAHDDAINAVALSDDG-DVYTGSADKKIKVWRRSP-GNKKHSLVDVLERHNSGIN-ALALS-CDGSV 244 (362)
Q Consensus 169 wd~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~h~~~v~-~i~~s-~~~~~ 244 (362)
+|+.+++.+.++.... . ...+..+. .+++.+.||++.+.++.+ +.........+..-..++. ...|. ++|++
T Consensus 165 ID~~t~~vv~tI~v~g---~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~ 240 (386)
T 3sjl_D 165 VDLEGKAFKRMLDVPD---C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL 240 (386)
T ss_dssp EETTTTEEEEEEECCS---E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EECCCCcEEEEEECCC---c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE
Confidence 9999999888875322 1 11222222 367888888888888875 3321111011111112222 23554 67766
Q ss_pred EEEEcCCCcEEEEeccCCCCcEEEEEeec---------C-ccceeEEEEEeC--C-eEEEeeC---------CCcEEEee
Q 044557 245 LYSGACDRSIIVWEKEEDDGNILVVGALR---------G-HTKSILCMAVVS--D-LVCSGSA---------DKTIRIWR 302 (362)
Q Consensus 245 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---------~-h~~~v~~~~~~~--~-~~~s~s~---------D~~i~~W~ 302 (362)
++ .+.+|+|.+.|...+.. .+...+. + .......+++++ + ++++... .+.|-+.|
T Consensus 241 ~~-vs~~g~V~v~d~~~~~~--~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD 317 (386)
T 3sjl_D 241 VW-PTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 317 (386)
T ss_dssp EE-EBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred EE-EeCCCEEEEEECCCCcc--eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence 66 55589999999865332 1222221 1 111223344443 3 3333221 23566666
Q ss_pred CCCCceeeeeEec-CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 303 GIDRNYTCLAVLE-GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 303 ~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
. .+.+.++.+. |+ .++.++++++++. .++++...+++|.++|..
T Consensus 318 ~--~t~kv~~~i~vg~--~~~~lavs~D~~~-------~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 318 A--KTGERLAKFEMGH--EIDSINVSQDEKP-------LLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp T--TTCCEEEEEEEEE--EECEEEECSSSSC-------EEEEEETTTTEEEEEETT
T ss_pred C--CCCeEEEEEECCC--CcceEEECCCCCe-------EEEEEcCCCCeEEEEECC
Confidence 4 3455565543 33 6889999877531 344445668999999985
No 219
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.65 E-value=2.9e-05 Score=75.45 Aligned_cols=273 Identities=14% Similarity=0.089 Sum_probs=145.0
Q ss_pred eEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEe------cCCcEEEEecCCC
Q 044557 25 LALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAH------QDHKIRVWKINNQ 98 (362)
Q Consensus 25 l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~------~dg~i~~w~~~~~ 98 (362)
+.+.+..++.++.|+.|.-+|..+............... ......+..+..+.++.++ .++.|..||.+++
T Consensus 117 ~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~---~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 117 VAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKR---SYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETG 193 (689)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTS---CCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred cEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCC---CccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCC
Confidence 345567888899999999999877543221111000000 0000111123355666654 3789999999877
Q ss_pred CCCcccceeeeeccCCCc-----hhh-hhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc-------
Q 044557 99 EPDHQKYTRLATLPTLGD-----RAI-KLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT------- 165 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~------- 165 (362)
+..-. ....+.... ... ....... ...+... ..+......++++|+..+++.++.++.
T Consensus 194 ~~~W~----~~~~~~~p~~~~~~~~~~~~~~~~~-g~~w~~~----~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~ 264 (689)
T 1yiq_A 194 KEAWR----FYTVPGDPKLPPEGKGMEIAAKTWF-GDAYVEQ----GGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWR 264 (689)
T ss_dssp CEEEE----EESSCCCTTSCCCSHHHHHHHTTCC-SSTHHHH----CEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred cEEEE----ecccCCCcccccccccccccccccC-Cceeeec----CCCCccccceeEcCCCCEEEEeCCCCCccccCCC
Confidence 63211 111110000 000 0000000 0000000 011122245788898899999988764
Q ss_pred ------------EEEEECCCceEEEeeecc-Cc-------ccEEEEEEcCCC----cEEEEeCCCeEEEEeCCCCCCcce
Q 044557 166 ------------IKIWRTSDFKCLESITNA-HD-------DAINAVALSDDG----DVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 166 ------------i~iwd~~~~~~~~~~~~~-h~-------~~v~~v~~~~~~----~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
|..+|.++++.+-.+... |. .++.......+| .++.++.+|.+.++|..+++....
T Consensus 265 ~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 265 SQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp HTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 999999999877655432 21 112111222244 267888999999999998864311
Q ss_pred eehh------------------------hhccc-----------cceeEEEEecCCCEEEEEcC----------------
Q 044557 222 LVDV------------------------LERHN-----------SGINALALSCDGSVLYSGAC---------------- 250 (362)
Q Consensus 222 ~~~~------------------------~~~h~-----------~~v~~i~~s~~~~~l~s~~~---------------- 250 (362)
.... ..... ..-..++|+|+...+++...
T Consensus 345 ~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~ 424 (689)
T 1yiq_A 345 KGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRN 424 (689)
T ss_dssp EESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCC
T ss_pred ccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccc
Confidence 1000 00000 00123788998888887632
Q ss_pred -----------------------------CCcEEEEeccCCCCcEEEEEeecCcccee-EEEEEeCCeEEEeeCCCcEEE
Q 044557 251 -----------------------------DRSIIVWEKEEDDGNILVVGALRGHTKSI-LCMAVVSDLVCSGSADKTIRI 300 (362)
Q Consensus 251 -----------------------------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~s~s~D~~i~~ 300 (362)
+|.|+.||+.+++... ..+.+.... -.+...+++++.++.|+.++.
T Consensus 425 ~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W----~~~~~~~~~~g~~~tagglvf~gt~dg~l~a 500 (689)
T 1yiq_A 425 PFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAW----EVPYVTIFNGGTLSTAGNLVFEGSADGRVIA 500 (689)
T ss_dssp SCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEE----EEEESSSCCCCEEEETTTEEEEECTTSEEEE
T ss_pred ccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEe----EccCCCCccCccceECCCEEEEECCCCcEEE
Confidence 3778899987654221 222222111 133345678889999999999
Q ss_pred eeCCCCceeeeeEec
Q 044557 301 WRGIDRNYTCLAVLE 315 (362)
Q Consensus 301 W~~~~~~~~~~~~l~ 315 (362)
||.. +++.+..+.
T Consensus 501 ~D~~--tG~~lw~~~ 513 (689)
T 1yiq_A 501 YAAD--TGEKLWEQP 513 (689)
T ss_dssp EETT--TCCEEEEEE
T ss_pred EECC--CCccceeee
Confidence 9954 456666665
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.59 E-value=2.1e-08 Score=90.15 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=91.0
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceeehhhhc--c
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLVDVLER--H 229 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--h 229 (362)
++..+++++.|+.|+.||..+++.+-.+.. ..+.+..+.+++. +++++.||.|..||..+++........... .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 467889999999999999999988766543 3444444455665 667789999999999887654332111100 0
Q ss_pred ccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeCCCCcee
Q 044557 230 NSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRGIDRNYT 309 (362)
Q Consensus 230 ~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~ 309 (362)
..++ +. ++..|++++.|+.|+.||..+++... .+..+.. + .+...++.+++++.|+.|+.||... ++
T Consensus 85 ~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w----~~~~~~~-~-~~~p~~~~v~~~~~dg~v~a~d~~t--G~ 151 (369)
T 2hz6_A 85 ASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQ----TLSSAFA-D-SLSPSTSLLYLGRTEYTITMYDTKT--RE 151 (369)
T ss_dssp TCSC----C------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSS--SS
T ss_pred cCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEE----EecCCCc-c-cccccCCEEEEEecCCEEEEEECCC--CC
Confidence 1111 11 35578888899999999998754321 2222221 1 1222456888899999999998543 23
Q ss_pred eeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 310 CLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 310 ~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+..+..+. ....++..+. ... ..++.++.||.|+.||..
T Consensus 152 ~~W~~~~~~--~~~~~~~~~~-----~~~-~~v~~~~~dg~v~a~d~~ 191 (369)
T 2hz6_A 152 LRWNATYFD--YAASLPEDDV-----DYK-MSHFVSNGDGLVVTVDSE 191 (369)
T ss_dssp CCCEEEEEE--ECCBCCCCCT-----TCC-CCEEEEETSCEEEEECTT
T ss_pred EEEeEeccc--ccCccccCCc-----ccc-ceEEEECCCCEEEEEECC
Confidence 333322111 1111111100 001 235567889999999874
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.59 E-value=2.2e-06 Score=76.05 Aligned_cols=188 Identities=12% Similarity=0.096 Sum_probs=111.2
Q ss_pred ecCceeEEEEecCCCEEEEEEC-----CCcEEEEECCCceEEEeeecc-----CcccEEEEEEcCC-CcE-EEEe---CC
Q 044557 141 HVDAVSALALTKDETLLYSVSW-----DRTIKIWRTSDFKCLESITNA-----HDDAINAVALSDD-GDV-YTGS---AD 205 (362)
Q Consensus 141 h~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~~~~~~~~~~~~-----h~~~v~~v~~~~~-~~~-~s~~---~d 205 (362)
|...+..++++++++++++-.. ++.|.+||+.+++.+..+... +...+..+++.++ +.+ ++.. .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 4567889999999887665443 579999999988866655421 2234688999975 554 4544 67
Q ss_pred CeEEEEeCCCCCCcceeeh--h---------hhc--------------cccceeEEEEecCCCEEEEEcCCC-cEEEEec
Q 044557 206 KKIKVWRRSPGNKKHSLVD--V---------LER--------------HNSGINALALSCDGSVLYSGACDR-SIIVWEK 259 (362)
Q Consensus 206 g~i~iw~~~~~~~~~~~~~--~---------~~~--------------h~~~v~~i~~s~~~~~l~s~~~d~-~i~~wd~ 259 (362)
+.|.+||+.++.....+.. . ..+ -...+..|+|+|||+.|+.+..++ .+..++.
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 8999999876542111100 0 000 012357899999999999888776 4444442
Q ss_pred cCC-CCcE---EEEE--eecCccceeEEEEEeC--CeEEEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeec
Q 044557 260 EED-DGNI---LVVG--ALRGHTKSILCMAVVS--DLVCSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAID 329 (362)
Q Consensus 260 ~~~-~~~~---~~~~--~~~~h~~~v~~~~~~~--~~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~ 329 (362)
... .... .... ...++......+++++ .++++...++.|.+|+....+...+... .+...+.+++|.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFGSD 301 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEECTT
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEECCC
Confidence 210 0000 0000 0012222344566654 4788888899999999522232222221 23456888988654
No 222
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.59 E-value=1.1e-05 Score=70.56 Aligned_cols=184 Identities=16% Similarity=0.127 Sum_probs=108.2
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
+.++...+++. ++.++.++.|..+|.. ++.+.... .....+.++.+.+++.++.++ +.|..+| .++.....
T Consensus 139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~--- 209 (330)
T 3hxj_A 139 YATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK-TNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWN--- 209 (330)
T ss_dssp CSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEE---
T ss_pred eeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEE---
Confidence 34455666776 5557788999999988 66554443 233455667777788887777 7888888 44432211
Q ss_pred hhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCcEEEeeC
Q 044557 225 VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~i~~W~~ 303 (362)
.......+.++.+.++|. |+.++.++.+..++.. +. ... ........+..+... .+.+..++.++.+..++.
T Consensus 210 -~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~-~~~---~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 210 -FYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GT-EKW---RFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp -ECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SC-EEE---EEECSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred -EccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CC-EeE---EeeCCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 112334577788887764 5556677888888742 22 111 222222223334444 457778888888988873
Q ss_pred CCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 304 IDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 304 ~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
. ...+..+.-....+.++.... ++. |..|+.+|.+++-...
T Consensus 283 -~--g~~~~~~~~~~~~~~~~~~d~---------~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 283 -D--GTEKWNFETGSWIIATPVIDE---------NGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp -T--SCEEEEEECSSCCCSCCEECT---------TCC-EEEECTTSCEEEEEC-
T ss_pred -C--CcEEEEEEcCCccccceEEcC---------CCE-EEEEcCCCeEEEEecc
Confidence 2 223333332333344443322 223 5567889999987764
No 223
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.59 E-value=7.2e-05 Score=63.20 Aligned_cols=193 Identities=10% Similarity=0.043 Sum_probs=121.8
Q ss_pred eeEEEEecCCCEEEEEEC--CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCcce
Q 044557 145 VSALALTKDETLLYSVSW--DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~ 221 (362)
...++|+|++.+.++.+. ++.|++.|+.+++.+..+..+.......+++.. ++++ +.-.++.+.++|..+.+...+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEE
Confidence 578999998755554443 589999999999988876543333344566653 3554 455788999999987654333
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccc---eeEEEEEeCC-eEEEeeCCCc
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK---SILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~s~s~D~~ 297 (362)
+.. +... ...+++||+.|+.+..+++|.++|..+.+... .+. ...+.. .+..+.+... .+++...++.
T Consensus 102 i~~---g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~-~I~-Vg~~~~p~~~~nele~~dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 102 FTH---QMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIK-KHN-VKYNGHRVIRLNELEYINGEVWANIWQTDC 173 (266)
T ss_dssp EEC---CSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEE-EEE-CEETTEECCCEEEEEEETTEEEEEETTSSE
T ss_pred EEC---CCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEE-EEE-ECCCCcccccceeEEEECCEEEEecCCCCe
Confidence 211 1011 23466789888888888999999987643211 111 111111 2455666544 4555556778
Q ss_pred EEEeeCCCCceeeeeEecCC-------------CCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 298 IRIWRGIDRNYTCLAVLEGH-------------RGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 298 i~~W~~~~~~~~~~~~l~~h-------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
|.+-|.. +++.++.+.-. ....+.++++|+++ .+++++....++.+-++
T Consensus 174 V~vID~~--tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~--------~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 174 IARISAK--DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK--------RIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEEEETT--TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT--------EEEEEETTCSEEEEEEE
T ss_pred EEEEECC--CCcEEEEEECCCcccccccccccccCceEEEEEcCCCC--------EEEEECCCCCeEEEEEE
Confidence 8888853 34455554311 13568999987654 57888888888877776
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.57 E-value=1.6e-05 Score=69.12 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=95.8
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeC-CCeEEEEeCCCCCCc
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSA-DKKIKVWRRSPGNKK 219 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~-dg~i~iw~~~~~~~~ 219 (362)
........|+|+++ ++++...++.|..|+.. ++. ..+. .+...+..+++.++|+++++.. ++.|.+|+.+ +. .
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~-~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~ 118 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLL-DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-A 118 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEE-ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEe-CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-E
Confidence 34556788999998 66777788999999984 432 3333 3456788999999999777664 4789999875 33 1
Q ss_pred ceeehhhhc-cccceeEEEEecCCCEEEE----EcC-------------CCcEEEEeccCCCCcEEEEEeecCccceeEE
Q 044557 220 HSLVDVLER-HNSGINALALSCDGSVLYS----GAC-------------DRSIIVWEKEEDDGNILVVGALRGHTKSILC 281 (362)
Q Consensus 220 ~~~~~~~~~-h~~~v~~i~~s~~~~~l~s----~~~-------------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~ 281 (362)
..+...... ....++.++++|+|...++ |.. .+.|..+|..+++. ..+. .......
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~~~----~~~~p~g 192 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QRMA----DLDHPNG 192 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EEEE----EESSEEE
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EEEe----cCCCCcc
Confidence 122111111 1235678999999998886 432 24566676644332 2221 2233466
Q ss_pred EEEeCC--eEEEeeCC------CcEEEeeCC
Q 044557 282 MAVVSD--LVCSGSAD------KTIRIWRGI 304 (362)
Q Consensus 282 ~~~~~~--~~~s~s~D------~~i~~W~~~ 304 (362)
++++++ .+..+..+ +.|.+|+..
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~ 223 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWR 223 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence 778765 45444443 688888854
No 225
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.56 E-value=3.1e-05 Score=69.13 Aligned_cols=147 Identities=13% Similarity=0.024 Sum_probs=98.8
Q ss_pred EEecCCCEEEEEEC-----CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe----------CCCeEEEEe
Q 044557 149 ALTKDETLLYSVSW-----DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS----------ADKKIKVWR 212 (362)
Q Consensus 149 ~~~~~~~~l~s~s~-----d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~----------~dg~i~iw~ 212 (362)
...|+++.++.... ++.|.+.|..+++.+..+..+.. + . ++++|+|+ ++.++ .++.|.+||
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 34789998888876 67999999999998888764433 3 4 99999997 55544 367899999
Q ss_pred CCCCCCcceeehhhh-c---cccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC
Q 044557 213 RSPGNKKHSLVDVLE-R---HNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS 286 (362)
Q Consensus 213 ~~~~~~~~~~~~~~~-~---h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 286 (362)
..+.+....+. .-. . .......++|+|||++|+.+.. ++.|.++|+.+.+ ++..+.-- +...-.....
T Consensus 116 ~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~----vv~tI~v~-g~~~~~P~g~ 189 (386)
T 3sjl_D 116 PVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA----FKRMLDVP-DCYHIFPTAP 189 (386)
T ss_dssp TTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE----EEEEEECC-SEEEEEEEET
T ss_pred CCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc----EEEEEECC-CcceeecCCC
Confidence 98876433321 110 0 0123456899999999998864 6899999998643 23333211 1111112234
Q ss_pred CeEEEeeCCCcEEEeeCC
Q 044557 287 DLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 287 ~~~~s~s~D~~i~~W~~~ 304 (362)
..+++.+.||.+-+.+..
T Consensus 190 ~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp TEEEEEETTSCEEEEECC
T ss_pred ceeEEECCCCCEEEEECC
Confidence 567788999998888753
No 226
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.54 E-value=5.2e-05 Score=63.46 Aligned_cols=183 Identities=9% Similarity=0.027 Sum_probs=111.1
Q ss_pred eeEEEEecCCCEEEEEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCcce
Q 044557 145 VSALALTKDETLLYSVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~~ 221 (362)
...+.|+ ++.++.+.+.+| .|+++|+++++.+..+.......-..+++.. ++++ +.-.++.+.+||..+.+...+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-DKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-CEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788888 677777777766 9999999999988877644332334455543 3454 445688999999988764443
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEeCC-eEEEeeCCCcEE
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVVSD-LVCSGSADKTIR 299 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~-~~~s~s~D~~i~ 299 (362)
+.. . . ....+++|++.|+.+..+++|.++|..+.+....+.-...+.. ..+..+.+... ..+..-.+..|.
T Consensus 123 i~~--~--~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 123 FNY--D--G---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIV 195 (262)
T ss_dssp EEC--S--S---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEE
T ss_pred EEC--C--C---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEE
Confidence 321 1 1 1133446888888777788899999876432111111111111 22334556544 455555677788
Q ss_pred EeeCCCCceeeeeEecCC------------CCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 300 IWRGIDRNYTCLAVLEGH------------RGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 300 ~W~~~~~~~~~~~~l~~h------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
+-|. ++++.++.+.-. .+-.+.+|++|+.+ .++++|-
T Consensus 196 vIDp--~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~--------~lfVTGK 244 (262)
T 3nol_A 196 RIDP--ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH--------RLFVTGK 244 (262)
T ss_dssp EECT--TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT--------EEEEEET
T ss_pred EEEC--CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC--------EEEEECC
Confidence 8774 344445444311 13558899987654 4677774
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.50 E-value=2.2e-05 Score=69.46 Aligned_cols=119 Identities=15% Similarity=0.167 Sum_probs=77.6
Q ss_pred CceeEEEEecCCCEEEEEE--CCCcEEEEECCCceEEEee------eccCcccEEEEEEcCCCcEEEEeC------CCeE
Q 044557 143 DAVSALALTKDETLLYSVS--WDRTIKIWRTSDFKCLESI------TNAHDDAINAVALSDDGDVYTGSA------DKKI 208 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~------~~~h~~~v~~v~~~~~~~~~s~~~------dg~i 208 (362)
..+..++++|+++++++.. .++.++||.+.+++.. .+ ...+...+..+++.++++|+.+.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5678999999999988864 2343666665555433 11 112445789999999998766543 5799
Q ss_pred EEEeCCCCCCcceee--hhhhccccceeEEEEecCCCEE-EEEc---CCCcEEEEeccCC
Q 044557 209 KVWRRSPGNKKHSLV--DVLERHNSGINALALSCDGSVL-YSGA---CDRSIIVWEKEED 262 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~--~~~~~h~~~v~~i~~s~~~~~l-~s~~---~d~~i~~wd~~~~ 262 (362)
.+||+.++.....+. .....+...+..++++|++..+ ++.. .++.|.+||..++
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g 155 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG 155 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC
Confidence 999998764222221 1111233456899999865554 4544 5789999998753
No 228
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.50 E-value=7.7e-05 Score=67.69 Aligned_cols=195 Identities=11% Similarity=0.050 Sum_probs=112.3
Q ss_pred eEEEEecCCCEEEEEEC--CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC--cEEEEeCCCeEEEEeCCCCCCcce
Q 044557 146 SALALTKDETLLYSVSW--DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG--DVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
..+.++||+++|+++.. ++.|.+.|+.+.+.+..+..+.. ....|++ .+++.+.||++.+.+..++.....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 35679999999999875 57899999999998887754321 2233333 256667777777777643322110
Q ss_pred eehhhhccccce-eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC----------ccceeEEEEEeC--C-
Q 044557 222 LVDVLERHNSGI-NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG----------HTKSILCMAVVS--D- 287 (362)
Q Consensus 222 ~~~~~~~h~~~v-~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~--~- 287 (362)
....+.....++ ..+.+.+++..++..+..+.|.+.|..... ...+..+.- ......-+++++ .
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~--~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~r 332 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG--ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDR 332 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC--EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc--eEEeeeeeeccccccccccccCCceeeEEcCCCCE
Confidence 000111111121 235678999888877888999999986432 111111110 001111234543 3
Q ss_pred eEEEee---------CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC-CCCcEEEEecc
Q 044557 288 LVCSGS---------ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS-LDCDIKVWQIS 357 (362)
Q Consensus 288 ~~~s~s---------~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s-~D~~i~~W~~~ 357 (362)
++++.. .++.|-+.|.. +.+.++++.. ....+.++|+|+++ .+++++. .+++|.++|+.
T Consensus 333 lyVa~~~~~~gthk~~s~~VsVID~~--T~kvv~~I~v-g~~P~gia~spDg~--------~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 333 IYLLVDQRDEWKHKAASRFVVVLNAE--TGERINKIEL-GHEIDSINVSQDAE--------PLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETT--TCCEEEEEEE-EEEECEEEECCSSS--------CEEEEEETTTTEEEEEETT
T ss_pred EEEEecccccccccCCCCEEEEEECC--CCeEEEEEEC-CCCcCeEEEccCCC--------EEEEEEcCCCCeEEEEECC
Confidence 333332 13468888853 3455665541 12478888887653 1355554 68999999986
Q ss_pred c
Q 044557 358 F 358 (362)
Q Consensus 358 ~ 358 (362)
.
T Consensus 402 t 402 (426)
T 3c75_H 402 T 402 (426)
T ss_dssp T
T ss_pred C
Confidence 3
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.50 E-value=3e-05 Score=75.49 Aligned_cols=193 Identities=12% Similarity=0.110 Sum_probs=106.8
Q ss_pred eEEEEecCCCEEEEEECCC-------------cEEEEECCCceE--EEeee-cc-CcccEEEEEEcCCCc-E-EEEe---
Q 044557 146 SALALTKDETLLYSVSWDR-------------TIKIWRTSDFKC--LESIT-NA-HDDAINAVALSDDGD-V-YTGS--- 203 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d~-------------~i~iwd~~~~~~--~~~~~-~~-h~~~v~~v~~~~~~~-~-~s~~--- 203 (362)
..++|+ |++.|+.++.|. .|++|++.+... ..... .. |...+.++.++|+|+ + ++.+
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 456799 999888888774 399999877542 11111 12 334577899999997 3 3333
Q ss_pred CCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCC---CcEEEEeccCCCC-cEEEEEeecCccce
Q 044557 204 ADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACD---RSIIVWEKEEDDG-NILVVGALRGHTKS 278 (362)
Q Consensus 204 ~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d---~~i~~wd~~~~~~-~~~~~~~~~~h~~~ 278 (362)
.+..|.++|+.++...... +..+....... ++++|..|+ ....+ +.|..+++..... .... +..|...
T Consensus 257 ~~~~i~~~d~~~~~~~~~~---l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~~ 329 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLT---VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD---LIPERQQ 329 (693)
T ss_dssp SCCEEEEEETTSTTCCCEE---EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EECCCSS
T ss_pred CCcEEEEEECCCCCCceEE---EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE---EecCCCC
Confidence 2358999998765422111 22333444443 667666555 44443 5688888876432 1122 2234433
Q ss_pred eEEEEEeCCeEEEee-CCC--cEEEeeCCCCceeeeeEec-CCCCcEEEEEeeecCCccCCCCCceEEEecCC---CCcE
Q 044557 279 ILCMAVVSDLVCSGS-ADK--TIRIWRGIDRNYTCLAVLE-GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL---DCDI 351 (362)
Q Consensus 279 v~~~~~~~~~~~s~s-~D~--~i~~W~~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~---D~~i 351 (362)
+..+...++.|+... .|+ .|++|+.... ....+. .+...+..+++++++ ..++++.+. -++|
T Consensus 330 ~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---~~~~l~~p~~~~~~~~~~~~d~--------~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 330 VLTVHSGSGYLFAEYMVDATARVEQFDYEGK---RVREVALPGLGSVSGFNGKHDD--------PALYFGFENYAQPPTL 398 (693)
T ss_dssp CEEEEEETTEEEEEEEETTEEEEEEECTTSC---EEEEECCSSSSEEEECCCCTTC--------SCEEEEEECSSSCCEE
T ss_pred EEEEEEECCEEEEEEEECCeeEEEEEECCCC---eeEEeecCCCceEEeeecCCCC--------CEEEEEecCCCCCCEE
Confidence 446666677655444 454 5778875422 223332 334455555544332 223333322 2678
Q ss_pred EEEecc
Q 044557 352 KVWQIS 357 (362)
Q Consensus 352 ~~W~~~ 357 (362)
..||+.
T Consensus 399 ~~~d~~ 404 (693)
T 3iuj_A 399 YRFEPK 404 (693)
T ss_dssp EEECTT
T ss_pred EEEECC
Confidence 888764
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.42 E-value=1.7e-05 Score=69.34 Aligned_cols=175 Identities=16% Similarity=0.156 Sum_probs=104.0
Q ss_pred CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccce
Q 044557 154 ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGI 233 (362)
Q Consensus 154 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v 233 (362)
+..+..++.++.|..+|.. ++...... .+...+.++...+++.++.++.++.|..+|.. +...... ......+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~----~~~~~~~ 179 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF----KTNDAIT 179 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE----ECSSCCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE----ecCCCce
Confidence 4456778889999999988 65544433 23334556667778889999999999999987 5422221 1223456
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeee
Q 044557 234 NALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 234 ~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~ 312 (362)
.++.+.+++...+ ++ +.+..+| .++. .. .........+.++...++ .+..++.++.+..++.. ...+.
T Consensus 180 ~~~~~d~~g~l~v-~t--~~l~~~d-~~g~--~~--~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~---g~~~~ 248 (330)
T 3hxj_A 180 SAASIGKDGTIYF-GS--DKVYAIN-PDGT--EK--WNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD---GTEKW 248 (330)
T ss_dssp SCCEECTTCCEEE-ES--SSEEEEC-TTSC--EE--EEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTT---SCEEE
T ss_pred eeeEEcCCCEEEE-Ee--CEEEEEC-CCCc--EE--EEEccCCcceeceEECCCCeEEEEcCCCeEEEECCC---CCEeE
Confidence 6677777776544 44 7899998 4322 21 122223345667777655 77778888888888632 22233
Q ss_pred EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 313 VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 313 ~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
.+......+..+.+. ..+. |..++.+|.|..+|.
T Consensus 249 ~~~~~~~~~~~~~~~---------~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 249 RFKTGKRIESSPVIG---------NTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp EEECSSCCCSCCEEC---------TTSC-EEEECTTCEEEEECT
T ss_pred EeeCCCCccccceEc---------CCCe-EEEecCCCCEEEECC
Confidence 333222222222221 1122 455666777777774
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.38 E-value=0.00015 Score=70.38 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=110.0
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEee--cceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG--KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
.+..++.++.++.|.-+|..+....+.............. ......+....+.++.++.|+.|..+|..+++.....
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~- 147 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSV- 147 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE-
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeee-
Confidence 4667777888999999998765432221111000000000 0001223445678999999999999999876532110
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEE-----CCCcEEEEECCCceEEEee
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVS-----WDRTIKIWRTSDFKCLESI 180 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-----~d~~i~iwd~~~~~~~~~~ 180 (362)
........ ... ....++ + .++.+++..+ .++.|..||.++++.+-.+
T Consensus 148 ----~~~~~~~~---------~~~----------~~~sP~--v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 148 ----DTRADHKR---------SYT----------ITGAPR--V---VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ----ECCSCTTS---------CCB----------CCSCCE--E---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ----cCcCCCCC---------Ccc----------ccCCcE--E---ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 00000000 000 000011 1 1344433322 3789999999999876554
Q ss_pred eccC-c----------------------------cc-EEEEEEcCCCc-EEEEeCCC-------------------eEEE
Q 044557 181 TNAH-D----------------------------DA-INAVALSDDGD-VYTGSADK-------------------KIKV 210 (362)
Q Consensus 181 ~~~h-~----------------------------~~-v~~v~~~~~~~-~~s~~~dg-------------------~i~i 210 (362)
.... . .. ...+++.|++. ++.+..++ .|.-
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 3110 0 00 12467777654 66776665 3999
Q ss_pred EeCCCCCCcceeehhhhccc-------cceeEEEEecCCC---EEEEEcCCCcEEEEeccCCC
Q 044557 211 WRRSPGNKKHSLVDVLERHN-------SGINALALSCDGS---VLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~-------~~v~~i~~s~~~~---~l~s~~~d~~i~~wd~~~~~ 263 (362)
+|.++++..-.... ..|. .+........+|+ .++.++.+|.++++|..+++
T Consensus 280 lD~~TG~~~W~~~~--~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 280 VNADTGEYVWHYQT--TPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp EETTTCCEEEEEES--STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEccCCceeEeeec--CCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99998875433211 1121 1222223334665 78999999999999987654
No 232
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.35 E-value=0.00014 Score=60.83 Aligned_cols=197 Identities=14% Similarity=0.180 Sum_probs=117.8
Q ss_pred eeccceeeecccCccc--eeeeEec-CcEEEEecCCC--eEEEeecCCCCcccceeeeccceeEEeecce-eEEEEEcCc
Q 044557 6 VVDHHCLTTLKGHNSY--VSSLALA-GKFLYTGSSDN--EVRSWDCNTFSSELDQEFLSNNNIVAVGKGA-VKSLVVLAD 79 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~~--V~~l~~~-~~~l~t~s~Dg--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~ 79 (362)
.-..+.++++ .|... ...|.++ +.+.++.+.+| .|++.|+++..... ... ..... ...+...++
T Consensus 28 ~~~~~vv~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~--~~~-------l~~~~FgeGit~~g~ 97 (262)
T 3nol_A 28 IYDYQIVHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQ--QIE-------LGKRYFGEGISDWKD 97 (262)
T ss_dssp EEEEEEEEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEE--EEE-------CCTTCCEEEEEEETT
T ss_pred ccceEEEEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEE--EEe-------cCCccceeEEEEeCC
Confidence 3344556666 45443 3778886 45566666665 89999988754211 111 11111 123455677
Q ss_pred eeEEEec-CCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 80 KLFSAHQ-DHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 80 ~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
+|+...+ ++.+.+||.++.+. +..++.. . ....+++|++.|+
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~-------~~ti~~~----------------------------~--eG~glt~dg~~L~ 140 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQ-------VRSFNYD----------------------------G--EGWGLTHNDQYLI 140 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCE-------EEEEECS----------------------------S--CCCCEEECSSCEE
T ss_pred EEEEEEeeCCEEEEEECccCcE-------EEEEECC----------------------------C--CceEEecCCCEEE
Confidence 8777664 78899999876442 1111110 0 1123346677777
Q ss_pred EEECCCcEEEEECCCceEEEeeeccC-c---ccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeeh-hhhc----
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNAH-D---DAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVD-VLER---- 228 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~h-~---~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~-~~~~---- 228 (362)
.+..++.|.++|.++.+.+..+.... . ..++.+.+. +|++++.. .++.|.+.|..+++....+.. .+..
T Consensus 141 ~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~ 219 (262)
T 3nol_A 141 MSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP 219 (262)
T ss_dssp ECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS
T ss_pred EECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc
Confidence 76667889999999988877765321 1 234456666 67766555 578999999988864433311 0110
Q ss_pred -c--ccceeEEEEecCCCEEEEEcC
Q 044557 229 -H--NSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 229 -h--~~~v~~i~~s~~~~~l~s~~~ 250 (362)
+ ..-.+.|+++|+++.|+..|.
T Consensus 220 ~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 220 LPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccCcCCceEEEEEcCCCCEEEEECC
Confidence 1 124578999999888887774
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.35 E-value=0.00014 Score=65.81 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=76.9
Q ss_pred EEEEecCCCEEEEEE-------------------CCCcEEEEECCCceEEEeeecc-CcccEEEEEE--cCCCc--EEEE
Q 044557 147 ALALTKDETLLYSVS-------------------WDRTIKIWRTSDFKCLESITNA-HDDAINAVAL--SDDGD--VYTG 202 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s-------------------~d~~i~iwd~~~~~~~~~~~~~-h~~~v~~v~~--~~~~~--~~s~ 202 (362)
.+.|+|+++.+++.. .+.+|.+||+.+++.+.++..+ .......+.| +|+++ ++++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 466799999888875 3689999999998888877653 2234456666 89987 3344
Q ss_pred e-----CCCeEEEEeCCCCCCcc-eee--h------hh---h----ccccceeEEEEecCCCEEEEEcC-CCcEEEEecc
Q 044557 203 S-----ADKKIKVWRRSPGNKKH-SLV--D------VL---E----RHNSGINALALSCDGSVLYSGAC-DRSIIVWEKE 260 (362)
Q Consensus 203 ~-----~dg~i~iw~~~~~~~~~-~~~--~------~~---~----~h~~~v~~i~~s~~~~~l~s~~~-d~~i~~wd~~ 260 (362)
- .+++|.+|..+.+.... ..+ . .+ . +-......|.+||||++|+++.. .+.|.+||+.
T Consensus 272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 4 67788776654321000 000 0 00 0 00234678999999999987765 6789999986
Q ss_pred CC
Q 044557 261 ED 262 (362)
Q Consensus 261 ~~ 262 (362)
..
T Consensus 352 d~ 353 (462)
T 2ece_A 352 NP 353 (462)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 234
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.35 E-value=0.00024 Score=63.52 Aligned_cols=143 Identities=7% Similarity=-0.125 Sum_probs=91.6
Q ss_pred ecCCCEEEEEEC--CC---cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe----------CCCeEEEEeCC
Q 044557 151 TKDETLLYSVSW--DR---TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS----------ADKKIKVWRRS 214 (362)
Q Consensus 151 ~~~~~~l~s~s~--d~---~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~----------~dg~i~iw~~~ 214 (362)
.|++++++++.. .. .|.++|..+++.+..+..+ ..+ .++++|+|+ ++.+. .++.|.+||..
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 467777776653 22 8899999999887766533 223 899999997 55543 36789999998
Q ss_pred CCCCcceeehhh-hc---cccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEe-ecCccceeEEEEEeCC
Q 044557 215 PGNKKHSLVDVL-ER---HNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGA-LRGHTKSILCMAVVSD 287 (362)
Q Consensus 215 ~~~~~~~~~~~~-~~---h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~ 287 (362)
+.+....+. .. .. +......++|+|||++|+.+.. ++.|.++| .+.+ .+.. +.- ...+......+.
T Consensus 106 t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~----~~~~~i~~-~~~~~~~~~~~~ 178 (373)
T 2mad_H 106 TFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS----SDDQLLSS-PTCYHIHPGAPS 178 (373)
T ss_pred CCcEEEEEE-CCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC----EEeEEcCC-CceEEEEeCCCc
Confidence 765333221 10 00 0122457899999999998874 57899999 7543 2222 221 122221222334
Q ss_pred eEEEeeCCCcEEEeeC
Q 044557 288 LVCSGSADKTIRIWRG 303 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~ 303 (362)
.+++.+.|+.+.+++.
T Consensus 179 ~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH 194 (373)
T ss_pred eEEEEcCCCCEEEEEC
Confidence 6778889999999986
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.32 E-value=0.00023 Score=68.96 Aligned_cols=204 Identities=8% Similarity=0.047 Sum_probs=109.5
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeE--EeecceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIV--AVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
.+..++.++.++.|.-+|..+....+........... .........+.+..+.++.++.|+.|..+|..+++.....
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~- 154 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ- 154 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE-
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeee-
Confidence 4566777778899999998765432211111000000 0000011233456778999999999999999876532110
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC------CCcEEEEECCCceEEEe
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW------DRTIKIWRTSDFKCLES 179 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~ 179 (362)
........ ...+.+.-.-.++ .++.++. ++.|+.+|.++++.+-.
T Consensus 155 ----~~~~~~~~------------------------~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 155 ----NTFEGQKG------------------------SLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ----ETTTTCCS------------------------SCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ----cCCcCcCc------------------------CcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 00000000 0000000001133 3444432 78999999999987655
Q ss_pred eeccCcc-------------------------------cEEEEEEcCCCc-EEEEeCCC-------------------eE
Q 044557 180 ITNAHDD-------------------------------AINAVALSDDGD-VYTGSADK-------------------KI 208 (362)
Q Consensus 180 ~~~~h~~-------------------------------~v~~v~~~~~~~-~~s~~~dg-------------------~i 208 (362)
+...... ....+++.|++. ++.+..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 4321100 012467777654 66665553 58
Q ss_pred EEEeCCCCCCcceeehhhhccc-------cceeEEEEecCC---CEEEEEcCCCcEEEEeccCCC
Q 044557 209 KVWRRSPGNKKHSLVDVLERHN-------SGINALALSCDG---SVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~-------~~v~~i~~s~~~---~~l~s~~~d~~i~~wd~~~~~ 263 (362)
..+|..+++...... ...|. .....+....+| ..|+.++.+|.++++|..+++
T Consensus 286 ~AlD~~TG~~~W~~~--~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQ--ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp EEECTTTCCEEEEEE--SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEEECCCCCEEEEEe--cCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 889998886443221 11121 122223444577 689999999999999988754
No 236
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.31 E-value=0.00023 Score=59.55 Aligned_cols=192 Identities=10% Similarity=0.139 Sum_probs=116.4
Q ss_pred ceeeecccCcc--ceeeeEecC-cEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecc-eeEEEEEcCceeEEEe
Q 044557 10 HCLTTLKGHNS--YVSSLALAG-KFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG-AVKSLVVLADKLFSAH 85 (362)
Q Consensus 10 ~~~~tl~gH~~--~V~~l~~~~-~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~l~s~~ 85 (362)
+.++++ .|.. ....|.+++ .+.++.+.+|.|+++|+++....... + ... -...+...+++|+.+.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l---------~~~~FgeGit~~g~~Ly~lt 112 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R---------LGNIFAEGLASDGERLYQLT 112 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E---------CTTCCEEEEEECSSCEEEEE
T ss_pred EEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C---------CCCcceeEEEEeCCEEEEEE
Confidence 455555 4443 346788864 56677888899999998875432211 1 111 1123555677777665
Q ss_pred -cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCC
Q 044557 86 -QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDR 164 (362)
Q Consensus 86 -~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 164 (362)
.++.+.+||.++.+. +..++.. . ....+.+|++.|+.+..++
T Consensus 113 w~~~~v~V~D~~Tl~~-------~~ti~~~----------------------------~--eGwGLt~Dg~~L~vSdGs~ 155 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQR-------ERTTRYS----------------------------G--EGWGLCYWNGKLVRSDGGT 155 (268)
T ss_dssp SSSCEEEEEETTTTEE-------EEEEECS----------------------------S--CCCCEEEETTEEEEECSSS
T ss_pred ccCCEEEEEECCcCcE-------EEEEeCC----------------------------C--ceeEEecCCCEEEEECCCC
Confidence 578899999865431 1111110 0 0122345678887777789
Q ss_pred cEEEEECCCceEEEeeecc-Cc---ccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeehh-hh------cc--c
Q 044557 165 TIKIWRTSDFKCLESITNA-HD---DAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVDV-LE------RH--N 230 (362)
Q Consensus 165 ~i~iwd~~~~~~~~~~~~~-h~---~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~~-~~------~h--~ 230 (362)
.|.++|.++.+.+..+... +. ..++.+.+. +|++++.. .++.|.+.|..+++....+.-. +. .+ .
T Consensus 156 ~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~ 234 (268)
T 3nok_A 156 MLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE 234 (268)
T ss_dssp EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT
T ss_pred EEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcC
Confidence 9999999999887766432 11 134566666 67766555 5789999999888644333211 11 11 1
Q ss_pred cceeEEEEecCCCEEEEEcC
Q 044557 231 SGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 231 ~~v~~i~~s~~~~~l~s~~~ 250 (362)
.-.+.|+++|+++.|+..+.
T Consensus 235 ~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 235 AVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CCEEEEEECTTTCCEEEEET
T ss_pred CceEEEEEcCCCCEEEEeCC
Confidence 24578999998777666553
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.28 E-value=0.00061 Score=57.50 Aligned_cols=209 Identities=13% Similarity=0.149 Sum_probs=125.6
Q ss_pred eeccceeeecccCcc--ceeeeEecC--cEEEEecC--CCeEEEeecCCCCcccceeeeccceeEEeecc-eeEEEEEcC
Q 044557 6 VVDHHCLTTLKGHNS--YVSSLALAG--KFLYTGSS--DNEVRSWDCNTFSSELDQEFLSNNNIVAVGKG-AVKSLVVLA 78 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~--~V~~l~~~~--~~l~t~s~--Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~ 78 (362)
....+.++++ .|.. ....|.+++ .+.++.+. +++|++.|+.+.... .... .... ....+.+.+
T Consensus 6 ~~~~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~--~~i~-------l~~~~fgeGi~~~g 75 (266)
T 2iwa_A 6 VYIVEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE--NIHK-------MDDSYFGEGLTLLN 75 (266)
T ss_dssp EEEEEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE--EEEE-------CCTTCCEEEEEEET
T ss_pred ccCceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE--EEEe-------cCCCcceEEEEEeC
Confidence 3455666777 3443 357888864 34444443 689999998775421 1111 0111 122345556
Q ss_pred ceeEEEe-cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEE
Q 044557 79 DKLFSAH-QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLL 157 (362)
Q Consensus 79 ~~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 157 (362)
+.|+.+. .++.+.++|..+.+. +..++.. .-....+++|++.|
T Consensus 76 ~~lyv~t~~~~~v~viD~~t~~v-------~~~i~~g-----------------------------~~~g~glt~Dg~~l 119 (266)
T 2iwa_A 76 EKLYQVVWLKNIGFIYDRRTLSN-------IKNFTHQ-----------------------------MKDGWGLATDGKIL 119 (266)
T ss_dssp TEEEEEETTCSEEEEEETTTTEE-------EEEEECC-----------------------------SSSCCEEEECSSSE
T ss_pred CEEEEEEecCCEEEEEECCCCcE-------EEEEECC-----------------------------CCCeEEEEECCCEE
Confidence 7777665 468899999865331 1111110 00112356678777
Q ss_pred EEEECCCcEEEEECCCceEEEeeeccCc----ccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeeh-hhh----
Q 044557 158 YSVSWDRTIKIWRTSDFKCLESITNAHD----DAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVD-VLE---- 227 (362)
Q Consensus 158 ~s~s~d~~i~iwd~~~~~~~~~~~~~h~----~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~-~~~---- 227 (362)
+++..+++|.+.|.++.+.+..+..+.. ...+.+.+. +|++++.. .++.|.+.|..+++....+.. .+.
T Consensus 120 ~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~ 198 (266)
T 2iwa_A 120 YGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLI 198 (266)
T ss_dssp EEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHH
T ss_pred EEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 7777789999999999887777653211 135677777 67765554 578999999998875444321 110
Q ss_pred --ccc--cceeEEEEecCCCEEE-EEcCCCcEEEEeccC
Q 044557 228 --RHN--SGINALALSCDGSVLY-SGACDRSIIVWEKEE 261 (362)
Q Consensus 228 --~h~--~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~ 261 (362)
.+. ...+.|+|+|+++.++ ++...+.+...++..
T Consensus 199 ~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 199 DEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 011 2457899999987655 555777887777654
No 238
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.28 E-value=0.00041 Score=57.51 Aligned_cols=183 Identities=11% Similarity=0.031 Sum_probs=110.6
Q ss_pred ceeEEEEecCCCEEEEEECC--CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDETLLYSVSWD--RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVY-TGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~iw~~~~~~~~~ 220 (362)
-...+.|++ +.++.+.+.+ ..|+.+|+.+++.+..+.......-..+++.. ++++ ..-.++.+.+||..+.+...
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEE
Confidence 466888886 5666666665 48999999999988877544332334455543 4444 45678999999998865443
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccc---eeEEEEEeCC-eEEEeeCCC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK---SILCMAVVSD-LVCSGSADK 296 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~s~s~D~ 296 (362)
++.. ...+ ..+++|++.|+.+..++.|.++|..+.+.... + ....+.. .+..+.+... .++....+.
T Consensus 100 ti~~----~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~-I-~V~~~g~~~~~lNeLe~~~G~lyanvw~s~ 170 (243)
T 3mbr_X 100 RFRY----PGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGS-I-KVTAGGRPLDNLNELEWVNGELLANVWLTS 170 (243)
T ss_dssp EEEC----SSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEE-E-ECEETTEECCCEEEEEEETTEEEEEETTTT
T ss_pred EEeC----CCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEE-E-EEccCCcccccceeeEEeCCEEEEEECCCC
Confidence 3321 1111 23446788888777789999999876432111 1 1111222 2345566544 445554566
Q ss_pred cEEEeeCCCCceeeeeEecC-------------CCCcEEEEEeeecCCccCCCCCceEEEecCC
Q 044557 297 TIRIWRGIDRNYTCLAVLEG-------------HRGPVKCLAAAIDNDRCDSSDTSYLVCSGSL 347 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~~l~~-------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~ 347 (362)
.|.+-|. ++++.+..+.- -.+-.+++|+.|+.+ .++++|-.
T Consensus 171 ~I~vIDp--~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~--------~lfVTGK~ 224 (243)
T 3mbr_X 171 RIARIDP--ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD--------RLFVTGKR 224 (243)
T ss_dssp EEEEECT--TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT--------EEEEEETT
T ss_pred eEEEEEC--CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC--------EEEEECCC
Confidence 7777774 33444544321 123568899987654 57778743
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.27 E-value=0.00029 Score=63.70 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=111.8
Q ss_pred cCCCEEEE-EECCCcEEEEECCCc----eEEEeee------ccCcccEEEEEEcCCCcEEEEeCC------CeEEEEeCC
Q 044557 152 KDETLLYS-VSWDRTIKIWRTSDF----KCLESIT------NAHDDAINAVALSDDGDVYTGSAD------KKIKVWRRS 214 (362)
Q Consensus 152 ~~~~~l~s-~s~d~~i~iwd~~~~----~~~~~~~------~~h~~~v~~v~~~~~~~~~s~~~d------g~i~iw~~~ 214 (362)
++.++|+. +..+++|.++|+.+. +..+.+. ..-......+...|+|-++++..+ |.|.++|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 77777666 456789999998654 5555442 001123455777899944444333 789999988
Q ss_pred CCCCcceeehhhhccccc-eeEEEEecCCCEEEEEc-------------------CCCcEEEEeccCCCCcEEEEEeecC
Q 044557 215 PGNKKHSLVDVLERHNSG-INALALSCDGSVLYSGA-------------------CDRSIIVWEKEEDDGNILVVGALRG 274 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~-v~~i~~s~~~~~l~s~~-------------------~d~~i~~wd~~~~~~~~~~~~~~~~ 274 (362)
+.+...++.. ...... -..+.|+|+++.+++.. .+.+|.+||+.+. . .+.++.-
T Consensus 173 T~~v~~~~~~--~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--k--~~~tI~v 246 (462)
T 2ece_A 173 SFEPLGKWEI--DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--K--RIHSLTL 246 (462)
T ss_dssp TCCEEEECCS--BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--E--EEEEEES
T ss_pred CCeEEEEEcc--CCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--c--EeeEEec
Confidence 7764433321 112211 23588899999998885 3789999999853 2 2223322
Q ss_pred --ccceeEEEEE--eCC--e-EEEee-----CCCcEEEeeCCCCceeeeeEe--cCC----------------CCcEEEE
Q 044557 275 --HTKSILCMAV--VSD--L-VCSGS-----ADKTIRIWRGIDRNYTCLAVL--EGH----------------RGPVKCL 324 (362)
Q Consensus 275 --h~~~v~~~~~--~~~--~-~~s~s-----~D~~i~~W~~~~~~~~~~~~l--~~h----------------~~~v~~~ 324 (362)
.......+.| +++ + ++++- .+++|-+|......+...+.+ ... ......+
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 1223455555 554 3 44444 567887765433333333321 100 1235566
Q ss_pred EeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 325 AAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.++++++ ++.+|.-..+.|.++|+.
T Consensus 327 ~lS~DGr--------fLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 327 DISLDDK--------FLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EECTTSC--------EEEEEETTTTEEEEEECS
T ss_pred EECCCCC--------EEEEEeCCCCEEEEEEec
Confidence 6665543 455666667899999985
No 240
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.23 E-value=7.8e-05 Score=66.40 Aligned_cols=265 Identities=10% Similarity=-0.026 Sum_probs=142.0
Q ss_pred cEEEEecCCC----eEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc--eeEEEe----------cCCcEEEE
Q 044557 30 KFLYTGSSDN----EVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD--KLFSAH----------QDHKIRVW 93 (362)
Q Consensus 30 ~~l~t~s~Dg----~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~l~s~~----------~dg~i~~w 93 (362)
..+++-..++ +|-+.|..+... ... +..+..+ .+.++++ .++.+. .+++|.+|
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v--~~~-------i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~Vsvi 101 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVT--LGH-------SLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF 101 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEE--EEE-------EEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeE--EEE-------EeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3455555455 788999776431 111 1223344 5666655 477775 37889999
Q ss_pred ecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC--CCcEEE--E
Q 044557 94 KINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW--DRTIKI--W 169 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--d~~i~i--w 169 (362)
|..+.+.. ..++..... .+. .......++++||+++|+++.. +..|.+ +
T Consensus 102 D~~T~~vv-------~~I~v~~~~---------~~~-----------~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~i 154 (368)
T 1mda_H 102 DPVTFLPI-------ADIELPDAP---------RFS-----------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVP 154 (368)
T ss_dssp CTTTCCEE-------EEEEETTSC---------SCC-----------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEET
T ss_pred ECCCCCEE-------EEEECCCcc---------ccc-----------cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEE
Confidence 98765421 111100000 000 0012346789999999998875 467888 8
Q ss_pred ECCCceEEEeeeccCcccEEEEEEcCCCc--EEEEeCCCeEEEEeCCC-----CCCcceeehhhhccccceeEEEEecCC
Q 044557 170 RTSDFKCLESITNAHDDAINAVALSDDGD--VYTGSADKKIKVWRRSP-----GNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 170 d~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~-----~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
|..+ +..+..+.. ..+.|++. +++.+.||++.+.+.++ +.........+.-...+. . ++++
T Consensus 155 D~~t---v~~i~v~~~-----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~ 222 (368)
T 1mda_H 155 GASD---DQLTKSASC-----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP 222 (368)
T ss_dssp TTEE---EEEEECSSC-----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT
T ss_pred chhh---ceEEECCCc-----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC
Confidence 8876 333322211 12234442 55667788888888765 211100000111112333 3 6777
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-------c---cceeEEEEEeCC---eEEEee---C-----CCcEEEe
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRG-------H---TKSILCMAVVSD---LVCSGS---A-----DKTIRIW 301 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-------h---~~~v~~~~~~~~---~~~s~s---~-----D~~i~~W 301 (362)
..++..+. +.|.+.|....... .+..+.- + ......+.++++ ++++.. . +..+.++
T Consensus 223 ~~~~~vs~-~~V~viD~~~~~~~--v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~Vi 299 (368)
T 1mda_H 223 GMLVWAVA-SSILQGDIPAAGAT--MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp TEEEECBS-SCCEEEECCSSCCE--EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred CEEEEEcC-CEEEEEECCCCcce--EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEE
Confidence 77666666 99999998643221 2222211 0 011112456543 344333 2 2345699
Q ss_pred eCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecC-CCCcEEEEeccc
Q 044557 302 RGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGS-LDCDIKVWQISF 358 (362)
Q Consensus 302 ~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s-~D~~i~~W~~~~ 358 (362)
|... .+.++.+.... ..++++|++++. +++++.. .+++|.++|++.
T Consensus 300 D~~t--~~vv~~i~vg~-~p~gi~~s~Dg~--------~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 300 TASV--GQTSGPISNGH-DSDAIIAAQDGA--------SDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp ESSS--CCEEECCEEEE-EECEEEECCSSS--------CEEEEEETTTTEEEEEESSS
T ss_pred ECCC--CeEEEEEECCC-CcceEEECCCCC--------EEEEEccCCCCeEEEEECCC
Confidence 9643 34455554322 588899987654 3566666 599999999864
No 241
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.22 E-value=0.00038 Score=58.27 Aligned_cols=181 Identities=9% Similarity=0.030 Sum_probs=111.2
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
...+.|+ ++.+..+.+.++.|+++|+++++.+..+ ......-..+++..+.-+.+.-.++.+.+||..+.+...++..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 4788887 4567777888899999999999887776 3333333456665432244555789999999988754433321
Q ss_pred hhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccc---eeEEEEEeCC-eEEEeeCCCcEEE
Q 044557 225 VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTK---SILCMAVVSD-LVCSGSADKTIRI 300 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~s~s~D~~i~~ 300 (362)
...+ ..+++|++.|+.+..+++|.++|.++.+.... + ....+.. .+..+.+... +.+....+..|.+
T Consensus 135 ----~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-I-~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 135 ----SGEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGA-V-QVKLRGQPVELINELECANGVIYANIWHSSDVLE 205 (268)
T ss_dssp ----SSCC---CCEEEETTEEEEECSSSEEEEECTTTCCEEEE-E-ECEETTEECCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred ----CCce---eEEecCCCEEEEECCCCEEEEEcCCCCeEEEE-E-EeCCCCcccccccccEEeCCEEEEEECCCCeEEE
Confidence 1111 23346788888888899999999876432111 1 1112222 2345666544 4555556777777
Q ss_pred eeCCCCceeeeeEecC-------------CCCcEEEEEeeecCCccCCCCCceEEEecC
Q 044557 301 WRGIDRNYTCLAVLEG-------------HRGPVKCLAAAIDNDRCDSSDTSYLVCSGS 346 (362)
Q Consensus 301 W~~~~~~~~~~~~l~~-------------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s 346 (362)
-|. ++++.++.+.- -.+-.+.+|+.|+.+ .++++|-
T Consensus 206 IDp--~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~--------rlfVTGK 254 (268)
T 3nok_A 206 IDP--ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG--------RIFMTGK 254 (268)
T ss_dssp ECT--TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC--------CEEEEET
T ss_pred EeC--CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC--------EEEEeCC
Confidence 774 34444544321 113568899977644 4777874
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.11 E-value=0.0085 Score=59.15 Aligned_cols=179 Identities=9% Similarity=0.147 Sum_probs=108.1
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec------cCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN------AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPG 216 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~ 216 (362)
..|.++...++|.+. .|+.++-|..|+..+..... +.. .....|.++...++|.+..|+.++-|..|+..++
T Consensus 310 ~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQ 387 (795)
T ss_dssp SCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTC
T ss_pred CcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCC
Confidence 468899989888755 46777888899865543211 111 1234689999999999999999888999987654
Q ss_pred CCcceeehhh-----hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec--CccceeEEEEEeCC-e
Q 044557 217 NKKHSLVDVL-----ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR--GHTKSILCMAVVSD-L 288 (362)
Q Consensus 217 ~~~~~~~~~~-----~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~-~ 288 (362)
... ...... ......|.++...++|..|..|..++-+..||..++. ........ .....|.++...++ .
T Consensus 388 ~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~ 464 (795)
T 4a2l_A 388 RFT-SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPDGEGN 464 (795)
T ss_dssp CEE-EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEECSSSC
T ss_pred cEE-EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECCCCC
Confidence 321 111000 0123568889888888867778877779999876532 22211100 12346788877643 4
Q ss_pred EEEeeCCCcEEEeeCCCCceeeeeEe----cCCCCcEEEEEee
Q 044557 289 VCSGSADKTIRIWRGIDRNYTCLAVL----EGHRGPVKCLAAA 327 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~~~~~~~~~~l----~~h~~~v~~~~~~ 327 (362)
+..|+. +.+.+|+............ .-....|.++...
T Consensus 465 lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 465 LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 444555 4577887543333222111 1123567777654
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.06 E-value=0.002 Score=62.31 Aligned_cols=275 Identities=15% Similarity=0.136 Sum_probs=142.0
Q ss_pred eEecCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCceeEEEec------CCcEEEEecCCC
Q 044557 25 LALAGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQ------DHKIRVWKINNQ 98 (362)
Q Consensus 25 l~~~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~------dg~i~~w~~~~~ 98 (362)
+.+.+..++.++.|+.|..+|..+.............. .........+..+.++.+.. ++.|..+|.+++
T Consensus 113 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~----~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 113 VALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK----PYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTG 188 (668)
T ss_dssp CEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS----SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred eEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC----cceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCC
Confidence 34456678888899999999987754322211100000 00001111233556666643 588999998876
Q ss_pred CCCcccceeeeeccCCC--chhh-hhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCc----------
Q 044557 99 EPDHQKYTRLATLPTLG--DRAI-KLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRT---------- 165 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~---------- 165 (362)
+....... ....+... .... ..........++. ...+......++++|+...++.++.++.
T Consensus 189 ~~~W~~~~-~~~~p~~~~~~~~~~~~~~~~~g~~~w~-----~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~ 262 (668)
T 1kv9_A 189 KLAWRFYT-VPGDPALPYEHPELREAAKTWQGDQYWK-----LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPG 262 (668)
T ss_dssp CEEEEEES-SCCCTTSCCSSHHHHHHHTTCCSSCHHH-----HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred cEEEEecc-cCCCCCccccccccccccccCCccceee-----eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCC
Confidence 63211100 00000000 0000 0000000000000 0012222345778888888888887763
Q ss_pred ---------EEEEECCCceEEEeeecc-Cc-------ccEEEEEEcCCCc----EEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 166 ---------IKIWRTSDFKCLESITNA-HD-------DAINAVALSDDGD----VYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 166 ---------i~iwd~~~~~~~~~~~~~-h~-------~~v~~v~~~~~~~----~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
|..+|.++++.+-.+... |. .+.....+..+|+ ++.++.+|.+.++|..+++.......
T Consensus 263 ~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 263 GGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccc
Confidence 999999999877655433 21 2222222223553 77888999999999988864311100
Q ss_pred h-------hh-ccccc------------------------eeEEEEecCCCEEEEE------------------------
Q 044557 225 V-------LE-RHNSG------------------------INALALSCDGSVLYSG------------------------ 248 (362)
Q Consensus 225 ~-------~~-~h~~~------------------------v~~i~~s~~~~~l~s~------------------------ 248 (362)
. +. ....+ -..++++|+...++..
T Consensus 343 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g 422 (668)
T 1kv9_A 343 GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTA 422 (668)
T ss_dssp SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCS
T ss_pred cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccC
Confidence 0 00 00000 0126778877766642
Q ss_pred ------------cCCCcEEEEeccCCCCcEEEEEeecCccce-eEEEEEeCCeEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 249 ------------ACDRSIIVWEKEEDDGNILVVGALRGHTKS-ILCMAVVSDLVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 249 ------------~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
..+|.|+.||+.+++.... .+.+... -..+...+++++.++.|+.++.||.. .++.+..+.
T Consensus 423 ~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~----~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~--tG~~l~~~~ 496 (668)
T 1kv9_A 423 AGFADATDVPAAVVSGALLAWDPVKQKAAWK----VPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD--KGEALWQFE 496 (668)
T ss_dssp SCGGGCCCCCGGGCEEEEEEEETTTTEEEEE----EEESSSCCCCEEEETTTEEEEECTTSEEEEEETT--TCCEEEEEE
T ss_pred ccccccCCCCCCCccceEEEEeCCCCcEEEE----ccCCCCCcCceeEeCCCEEEEECCcccchhhhhh--cChhheEec
Confidence 1347899999876542211 1111111 12344456788889999999999953 344555544
No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.05 E-value=0.0022 Score=53.08 Aligned_cols=197 Identities=17% Similarity=0.197 Sum_probs=116.2
Q ss_pred eeccceeeecccCcc--ceeeeEecCc-EEEEecCC--CeEEEeecCCCCcccceeeeccceeEEeecc-eeEEEEEcCc
Q 044557 6 VVDHHCLTTLKGHNS--YVSSLALAGK-FLYTGSSD--NEVRSWDCNTFSSELDQEFLSNNNIVAVGKG-AVKSLVVLAD 79 (362)
Q Consensus 6 ~~~~~~~~tl~gH~~--~V~~l~~~~~-~l~t~s~D--g~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~ 79 (362)
....+.++++ .|.. ....|.|+++ +..+.+.+ ..|++.|+.+......... ... -...+...++
T Consensus 6 ~~~~~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l---------~~~~fgeGi~~~~~ 75 (243)
T 3mbr_X 6 TQGYRVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEV---------PPPYFGAGIVAWRD 75 (243)
T ss_dssp BCCEEEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEEC---------CTTCCEEEEEEETT
T ss_pred ccceEEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeC---------CCCcceeEEEEeCC
Confidence 3445566677 6654 4568888754 55666665 4899999887542211111 111 1123445567
Q ss_pred eeEEEe-cCCcEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEE
Q 044557 80 KLFSAH-QDHKIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLY 158 (362)
Q Consensus 80 ~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 158 (362)
+|+... .++.+.+||.++.+. +..++.. . ....+.+++..|+
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~-------~~ti~~~----------------------------~--~Gwglt~dg~~L~ 118 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTP-------RARFRYP----------------------------G--EGWALTSDDSHLY 118 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEE-------EEEEECS----------------------------S--CCCEEEECSSCEE
T ss_pred EEEEEEeeCCEEEEEECCcCcE-------EEEEeCC----------------------------C--CceEEeeCCCEEE
Confidence 776654 578899999865431 1111110 0 1123345677677
Q ss_pred EEECCCcEEEEECCCceEEEeeecc-Cc---ccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcceeeh-hhh-----
Q 044557 159 SVSWDRTIKIWRTSDFKCLESITNA-HD---DAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKHSLVD-VLE----- 227 (362)
Q Consensus 159 s~s~d~~i~iwd~~~~~~~~~~~~~-h~---~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~~~~~-~~~----- 227 (362)
.+..++.|.++|.++.+.+..+... +. ..++.+.+. +|++++.. .+..|.+.|..+++....+.- .+.
T Consensus 119 vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~ 197 (243)
T 3mbr_X 119 MSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA 197 (243)
T ss_dssp EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS
T ss_pred EECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc
Confidence 6667889999999999887776532 11 234555555 67766554 577999999988864333211 010
Q ss_pred ---ccccceeEEEEecCCCEEEEEcC
Q 044557 228 ---RHNSGINALALSCDGSVLYSGAC 250 (362)
Q Consensus 228 ---~h~~~v~~i~~s~~~~~l~s~~~ 250 (362)
....-.+.|+++|+++.|+..|.
T Consensus 198 ~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 198 LTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ccCCcCCceEEEEEcCCCCEEEEECC
Confidence 01124578999998887776664
No 245
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.00 E-value=0.00019 Score=70.44 Aligned_cols=199 Identities=13% Similarity=0.097 Sum_probs=105.8
Q ss_pred ceeEEEEe-cCCCEEEEEE-CCC----cEEEEECCCc-eEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-----CeEEE
Q 044557 144 AVSALALT-KDETLLYSVS-WDR----TIKIWRTSDF-KCLESITNAHDDAINAVALSDDGD-VYTGSAD-----KKIKV 210 (362)
Q Consensus 144 ~v~~~~~~-~~~~~l~s~s-~d~----~i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-----g~i~i 210 (362)
.+...+|+ |||++||-+. .+| .|+++|+.++ +.+.... ......++|+|+|+ |+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 46678999 9999777443 333 5999999988 6322110 11123578999996 5544443 25777
Q ss_pred EeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC---CCcEEEEeccCCCCcE--EEEEeecCccceeEEEEEe
Q 044557 211 WRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC---DRSIIVWEKEEDDGNI--LVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 211 w~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~---d~~i~~wd~~~~~~~~--~~~~~~~~h~~~v~~~~~~ 285 (362)
+++.++.....++... ........+.|+|||++|+..+. ...|.++|+..+.... ..+ ..+......+..+.
T Consensus 252 ~~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV--RPREKGVRYDVQMH 328 (751)
T ss_dssp EETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES--SCCCTTCCEEEEEE
T ss_pred EECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe--ecCCCCceEEEeee
Confidence 8876543221222111 12223567889999998886653 3467888887643222 221 22233444555533
Q ss_pred -CC-eEEEeeCC--CcEEEeeCCCCceeeeeE-ecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 286 -SD-LVCSGSAD--KTIRIWRGIDRNYTCLAV-LEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 286 -~~-~~~s~s~D--~~i~~W~~~~~~~~~~~~-l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
++ +++....+ +..+||............ +..|...+.--.+.+. .+.++++...|+..+||-+
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--------~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--------SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--------SSEEEEEEEETTEEEEEEE
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--------CCEEEEEEEeCCEEEEEEE
Confidence 44 44444444 445555421111011223 3344443322223322 2357788888887666644
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.95 E-value=0.019 Score=56.65 Aligned_cols=269 Identities=11% Similarity=0.130 Sum_probs=147.8
Q ss_pred cceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEecCCcEEEEecCC
Q 044557 20 SYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAHQDHKIRVWKINN 97 (362)
Q Consensus 20 ~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~~dg~i~~w~~~~ 97 (362)
..|.++..+ ...|..|+.++-|.+|+...... . .+......-......|.++....+ .|..|+.++-|..|+...
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF--K-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSS--E-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc--e-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC
Confidence 567788775 33566677778888887543211 0 000000000011335667766543 588888887788887654
Q ss_pred CCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEE
Q 044557 98 QEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCL 177 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~ 177 (362)
... ......+... ...-....|.++...++++.|..|+.++-|.+||..+++..
T Consensus 387 ~~~-----~~~~~~~~~~---------------------~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~ 440 (795)
T 4a2l_A 387 QRF-----TSYTLQEDES---------------------ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE 440 (795)
T ss_dssp CCE-----EEECCC---------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred CcE-----EEEecCCCCc---------------------ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence 321 1100000000 00001246788888888885666788788999998876543
Q ss_pred Eeeec----cCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh----hccccceeEEEEecCCCEEEEEc
Q 044557 178 ESITN----AHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL----ERHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 178 ~~~~~----~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~----~~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
. +.. .....|.++...++|.+..|+.+ -+.+|+..++... ..... ......|.++...++|...+...
T Consensus 441 ~-~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 516 (795)
T 4a2l_A 441 N-FNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRSFT--TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE 516 (795)
T ss_dssp E-ECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTEEE--ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred E-eecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCeEE--EccccccccccCCceEEEEEECCCCCEEEEeC
Confidence 3 221 13457899998888998888774 4778887654211 11100 11235688898888887665544
Q ss_pred CCCcEEEEeccCCCCcEEEEEe----ecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEecCC-CCcEEE
Q 044557 250 CDRSIIVWEKEEDDGNILVVGA----LRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLEGH-RGPVKC 323 (362)
Q Consensus 250 ~d~~i~~wd~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~~h-~~~v~~ 323 (362)
+-+..|+..+.. . .... .......|.++..+.+ .+..++.. .+..|+.............|- ...|.+
T Consensus 517 --~Gl~~~~~~~~~--~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~ 590 (795)
T 4a2l_A 517 --EGLSVFKQEGLD--I-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYG 590 (795)
T ss_dssp --SCEEEEEEETTE--E-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEE
T ss_pred --CceEEEeCCCCe--E-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEE
Confidence 458888876432 1 1110 0112346788877643 44444444 677787544333322222222 235776
Q ss_pred EEee
Q 044557 324 LAAA 327 (362)
Q Consensus 324 ~~~~ 327 (362)
+...
T Consensus 591 i~~d 594 (795)
T 4a2l_A 591 ILED 594 (795)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6553
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.93 E-value=0.015 Score=54.93 Aligned_cols=160 Identities=12% Similarity=0.032 Sum_probs=91.3
Q ss_pred EEEecCCCEEEEEECC----------------CcEEEEECCCceEEEeeecc-C--------cccEEEEEEcCCCc----
Q 044557 148 LALTKDETLLYSVSWD----------------RTIKIWRTSDFKCLESITNA-H--------DDAINAVALSDDGD---- 198 (362)
Q Consensus 148 ~~~~~~~~~l~s~s~d----------------~~i~iwd~~~~~~~~~~~~~-h--------~~~v~~v~~~~~~~---- 198 (362)
+++.++...++.++.+ +.|..+|.++++.+-.++.. | ..++. +....+|+
T Consensus 240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL 318 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence 4566666666666532 25899999998876555432 1 12221 22223563
Q ss_pred EEEEeCCCeEEEEeCCCCCCcceeehhh--------h-ccccce--------------------------eEEEEecCCC
Q 044557 199 VYTGSADKKIKVWRRSPGNKKHSLVDVL--------E-RHNSGI--------------------------NALALSCDGS 243 (362)
Q Consensus 199 ~~s~~~dg~i~iw~~~~~~~~~~~~~~~--------~-~h~~~v--------------------------~~i~~s~~~~ 243 (362)
++.++.+|.+.++|..+++........- . ....++ ..++++|++.
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 5678889999999998886432221000 0 000011 2467888887
Q ss_pred EEEEEc-------------------------------------CCCcEEEEeccCCCCcEEEEEeecCccceeE--EEEE
Q 044557 244 VLYSGA-------------------------------------CDRSIIVWEKEEDDGNILVVGALRGHTKSIL--CMAV 284 (362)
Q Consensus 244 ~l~s~~-------------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~--~~~~ 284 (362)
.++... .++.|..||..+++.... . ... ..+. .+..
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~-~-~~~---~~~~~~~~~t 473 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWT-K-WEK---FAAWGGTLYT 473 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEE-E-EES---SCCCSBCEEE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEE-e-cCC---CCccceeEEE
Confidence 777654 347888888876542221 1 111 1111 1223
Q ss_pred eCCeEEEeeCCCcEEEeeCCCCceeeeeEec
Q 044557 285 VSDLVCSGSADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 285 ~~~~~~s~s~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
.++.+..++.|+.++.||.. +++.+..+.
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~--tG~~lw~~~ 502 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNK--DGKELWNFK 502 (571)
T ss_dssp TTTEEEEECTTSEEEEEETT--TCCEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECC--CCCEEEEEe
Confidence 35677779999999999953 455565554
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.90 E-value=0.0075 Score=52.38 Aligned_cols=190 Identities=13% Similarity=0.093 Sum_probs=106.5
Q ss_pred ceeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEeeec---c-CcccEEEEEEcC-CCcEEEEeC-------------
Q 044557 144 AVSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESITN---A-HDDAINAVALSD-DGDVYTGSA------------- 204 (362)
Q Consensus 144 ~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~-h~~~v~~v~~~~-~~~~~s~~~------------- 204 (362)
.+..+++.+ +++ |+.+...+.|..+|..+++. ..+.. . .......+++.+ +|.++.+..
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 467888997 555 55555556688888775532 22211 1 112467899999 898665443
Q ss_pred -----CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCC-CcEEEEEeecCccc
Q 044557 205 -----DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDD-GNILVVGALRGHTK 277 (362)
Q Consensus 205 -----dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~-~~~~~~~~~~~h~~ 277 (362)
++.|..||..++... .... .-...+.|+++|+|+.|+.+ ...+.|..|++.... ........+.+
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~-~~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--- 230 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETT-LLLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--- 230 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEE-EEEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS---
T ss_pred cccCCCceEEEEeCCCCEEE-Eecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC---
Confidence 367888887554311 1111 11234678999999876655 566889999986421 12222222222
Q ss_pred eeEEEEEeCC--eEEEeeC----------CCcEEEeeCCCCceeeeeEecCC----CCcEEEEEeeecCCccCCCCCceE
Q 044557 278 SILCMAVVSD--LVCSGSA----------DKTIRIWRGIDRNYTCLAVLEGH----RGPVKCLAAAIDNDRCDSSDTSYL 341 (362)
Q Consensus 278 ~v~~~~~~~~--~~~s~s~----------D~~i~~W~~~~~~~~~~~~l~~h----~~~v~~~~~~~~~~~~~~~~~~~~ 341 (362)
...++++++ +.++... .+.|..++.. .+.+..+... -..+..+++. .+.+
T Consensus 231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~---G~~~~~~~~~~g~~~~~~~~~~~~----------~g~L 296 (322)
T 2fp8_A 231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF---GNILEVIPLPPPFAGEHFEQIQEH----------DGLL 296 (322)
T ss_dssp -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT---SCEEEEEECCTTTTTSCCCEEEEE----------TTEE
T ss_pred -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC---CCEEEEEECCCCCccccceEEEEe----------CCEE
Confidence 455666543 4444433 3556666632 3334333322 2345555441 2356
Q ss_pred EEecCCCCcEEEEecc
Q 044557 342 VCSGSLDCDIKVWQIS 357 (362)
Q Consensus 342 l~s~s~D~~i~~W~~~ 357 (362)
.++....+.|..+++.
T Consensus 297 ~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 297 YIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEECSSCSEEEEEEC-
T ss_pred EEeecCCCceEEEecc
Confidence 6676677889888874
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.80 E-value=0.0029 Score=55.08 Aligned_cols=154 Identities=10% Similarity=0.114 Sum_probs=93.2
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeecc-------------------CcccEEEEEEcC-CCcEEEEe
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNA-------------------HDDAINAVALSD-DGDVYTGS 203 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-------------------h~~~v~~v~~~~-~~~~~s~~ 203 (362)
...++++++++++++++..++.|..|+..+.+... +... ....+..+++.+ ++.++.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 45678889999878888889999999987654321 2100 012478899997 78888776
Q ss_pred CCCeEEEEeCCCCCCcceeehhhhc-cccceeEEEEec-CCCEEEEEcC-----------------CCcEEEEeccCCCC
Q 044557 204 ADKKIKVWRRSPGNKKHSLVDVLER-HNSGINALALSC-DGSVLYSGAC-----------------DRSIIVWEKEEDDG 264 (362)
Q Consensus 204 ~dg~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~-~~~~l~s~~~-----------------d~~i~~wd~~~~~~ 264 (362)
..+.|..+|..++.. ..+.....+ .......+++.+ +|...++-.. ++.|..||.....
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~- 176 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE- 176 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-
Confidence 666688888664321 112111111 123467899999 8877666432 3667778765322
Q ss_pred cEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCC
Q 044557 265 NILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 265 ~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~ 304 (362)
..... ........++++++ ++++-+..+.|..++..
T Consensus 177 -~~~~~---~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~ 215 (322)
T 2fp8_A 177 -TTLLL---KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLE 215 (322)
T ss_dssp -EEEEE---EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred -EEEec---cCCccCcceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 11111 11122345677654 44555667888888754
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.80 E-value=0.0064 Score=58.77 Aligned_cols=203 Identities=11% Similarity=0.087 Sum_probs=107.6
Q ss_pred cCcEEEEecCCCeEEEeecCCCCcccceeeeccceeEEee--cceeEEEEEcCceeEEEecCCcEEEEecCCCCCCcccc
Q 044557 28 AGKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVG--KGAVKSLVVLADKLFSAHQDHKIRVWKINNQEPDHQKY 105 (362)
Q Consensus 28 ~~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 105 (362)
.+..++.++.++.|.-+|..+....+.............. ......+.+..+.++.++.|+.|..+|..+++.....
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~- 143 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQ- 143 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEE-
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeee-
Confidence 4566777778899998998765432211111000000000 0001223445678999999999999998876532110
Q ss_pred eeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEEC------CCcEEEEECCCceEEEe
Q 044557 106 TRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSW------DRTIKIWRTSDFKCLES 179 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~ 179 (362)
...... . ... ....++ + .++. ++.+.. ++.|..+|.++++.+-.
T Consensus 144 ----~~~~~~-~---------~~~----------~~~~P~--v---~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 144 ----QTTDPA-K---------PYS----------ITGAPR--V---VKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp ----ECSCTT-S---------SCB----------CCSCCE--E---ETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ----ccCCCC-C---------cce----------ecCCCE--E---ECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 000000 0 000 000011 1 1333 333332 58999999999987655
Q ss_pred eeccCc------------------------------ccEEEEEEcCCC-cEEEEeCCC-------------------eEE
Q 044557 180 ITNAHD------------------------------DAINAVALSDDG-DVYTGSADK-------------------KIK 209 (362)
Q Consensus 180 ~~~~h~------------------------------~~v~~v~~~~~~-~~~s~~~dg-------------------~i~ 209 (362)
+..... .....+++.|+. .++.+..++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 432100 001135677654 466666665 388
Q ss_pred EEeCCCCCCcceeehhhhccc-------cceeEEEEecCCC---EEEEEcCCCcEEEEeccCCC
Q 044557 210 VWRRSPGNKKHSLVDVLERHN-------SGINALALSCDGS---VLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 210 iw~~~~~~~~~~~~~~~~~h~-------~~v~~i~~s~~~~---~l~s~~~d~~i~~wd~~~~~ 263 (362)
-+|..+++..-... ...|. .+.....+..+|+ .++.++.+|.++++|..+++
T Consensus 274 AlD~~tG~~~W~~~--~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQ--VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EECTTTCCEEEEEE--SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEcCCCCceeeEee--cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 89998886443221 11121 2333333444775 68999999999999987654
No 251
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.75 E-value=0.0014 Score=59.44 Aligned_cols=109 Identities=14% Similarity=-0.011 Sum_probs=76.3
Q ss_pred ecCCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe----------CCCeEEEEeCC
Q 044557 151 TKDETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS----------ADKKIKVWRRS 214 (362)
Q Consensus 151 ~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~----------~dg~i~iw~~~ 214 (362)
.++++.+++.... +.|.++|..+++.+..+..+. .+ .++++|+|+ ++.+. .++.|.++|..
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 3566766666553 699999999999988876543 34 899999997 55554 46789999998
Q ss_pred CCCCcceeehh-hhc--cccceeEEEEecCCCEEEEEcC--CCcEEEEeccCC
Q 044557 215 PGNKKHSLVDV-LER--HNSGINALALSCDGSVLYSGAC--DRSIIVWEKEED 262 (362)
Q Consensus 215 ~~~~~~~~~~~-~~~--h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~ 262 (362)
+.+....+.-. ... .......+.|+|||++|+.+.. ++.|.+.|..+.
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~ 210 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK 210 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence 87643332110 000 0123456889999999999874 578999998764
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.66 E-value=0.041 Score=52.25 Aligned_cols=72 Identities=13% Similarity=0.027 Sum_probs=47.5
Q ss_pred EEEEecCCCEEEEEECCC----------------cEEEEECCCceEEEeeeccCc---------ccEEEEEEc-CCC---
Q 044557 147 ALALTKDETLLYSVSWDR----------------TIKIWRTSDFKCLESITNAHD---------DAINAVALS-DDG--- 197 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~----------------~i~iwd~~~~~~~~~~~~~h~---------~~v~~v~~~-~~~--- 197 (362)
.+++.++...++.+..++ .|..+|.++++.+-.++..+. .++. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 345667777777776653 789999999987665554332 1221 2222 456
Q ss_pred c-EEEEeCCCeEEEEeCCCCCCc
Q 044557 198 D-VYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 198 ~-~~s~~~dg~i~iw~~~~~~~~ 219 (362)
. ++.++.+|.+.++|..+++..
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEECCCcEEEEEECCCCCEe
Confidence 3 556889999999999888643
No 253
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.62 E-value=0.011 Score=52.40 Aligned_cols=157 Identities=9% Similarity=0.004 Sum_probs=88.3
Q ss_pred EEEEEECCCcEEEEECCC-----ceEEE----eeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 156 LLYSVSWDRTIKIWRTSD-----FKCLE----SITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 156 ~l~s~s~d~~i~iwd~~~-----~~~~~----~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
.+++.+.|+.+.+.++++ ++... .+. ....+. ++.+++.++..+. +.|.+.|...... +....+
T Consensus 177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~-vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~--~v~~~~ 249 (368)
T 1mda_H 177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN-CSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA--TMKAAI 249 (368)
T ss_dssp EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC-BCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC--EEECCC
T ss_pred EEEEEcCCCCEEEEECccccccCCeEEEEeeeeee-CCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc--eEEEEE
Confidence 344556677777777765 33221 011 112233 3444455665556 8999999864321 111110
Q ss_pred ----------hccccceeEEEEecCCCEEEEEcC---------CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC
Q 044557 227 ----------ERHNSGINALALSCDGSVLYSGAC---------DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD 287 (362)
Q Consensus 227 ----------~~h~~~v~~i~~s~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (362)
.....+...++++||+++++.+.. ++.+.++|+.+.+ .+..+.... ....+.++++
T Consensus 250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~----vv~~i~vg~-~p~gi~~s~D 324 (368)
T 1mda_H 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ----TSGPISNGH-DSDAIIAAQD 324 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC----EEECCEEEE-EECEEEECCS
T ss_pred EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe----EEEEEECCC-CcceEEECCC
Confidence 001122233789999999887643 2356699998643 233443222 4677888754
Q ss_pred ---eEEEee-CCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 288 ---LVCSGS-ADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 288 ---~~~s~s-~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
++++.. .++.|.++|.. +.+.++++.-.. ..+.+++.
T Consensus 325 g~~l~va~~~~~~~VsVID~~--t~kvv~~I~vg~-~P~~i~~~ 365 (368)
T 1mda_H 325 GASDNYANSAGTEVLDIYDAA--SDQDQSSVELDK-GPESLSVQ 365 (368)
T ss_dssp SSCEEEEEETTTTEEEEEESS--SCEEEEECCCCS-CCCEEECC
T ss_pred CCEEEEEccCCCCeEEEEECC--CCcEEEEEECCC-CCCEEEee
Confidence 567777 69999999964 456677775433 23445543
No 254
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.55 E-value=0.033 Score=53.67 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=78.6
Q ss_pred EEEEecCCCEEEEEE-CC-----CcEEEEECCCceEEEee----eccCcccEEEEEEcCCCc-EEEEeCC---------C
Q 044557 147 ALALTKDETLLYSVS-WD-----RTIKIWRTSDFKCLESI----TNAHDDAINAVALSDDGD-VYTGSAD---------K 206 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s-~d-----~~i~iwd~~~~~~~~~~----~~~h~~~v~~v~~~~~~~-~~s~~~d---------g 206 (362)
++++.+++++++.|+ .+ ..+.+||..+.+....- ....... ....+..++. ++.++.| .
T Consensus 291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~ 369 (656)
T 1k3i_A 291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPST 369 (656)
T ss_dssp EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSS
T ss_pred ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCcc
Confidence 344557889888888 44 57999999876533210 0000000 0011123333 3444333 4
Q ss_pred eEEEEeCCCCCCcceeehhhhc------cccceeEEEEec-CCCEEEEEcCCC-----------cEEEEeccCCCCcEEE
Q 044557 207 KIKVWRRSPGNKKHSLVDVLER------HNSGINALALSC-DGSVLYSGACDR-----------SIIVWEKEEDDGNILV 268 (362)
Q Consensus 207 ~i~iw~~~~~~~~~~~~~~~~~------h~~~v~~i~~s~-~~~~l~s~~~d~-----------~i~~wd~~~~~~~~~~ 268 (362)
.+..||..+..-.... ..... ....-.++.+.. +++.++.||.++ .|.+||..+.. ...
T Consensus 370 ~v~~yd~~~~~w~~~~-~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~ 446 (656)
T 1k3i_A 370 AMNWYYTSGSGDVKSA-GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP--NTV 446 (656)
T ss_dssp EEEEEECSTTCEEEEE-EECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC--EEE
T ss_pred ceeeeecCCcceeecC-CccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC--eeE
Confidence 5778887654311111 00000 011123444443 777888888543 56777765432 222
Q ss_pred EE--eecCccceeEEEEE-eCCeEEEeeCC-----------CcEEEeeCCCCceeeee
Q 044557 269 VG--ALRGHTKSILCMAV-VSDLVCSGSAD-----------KTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 269 ~~--~~~~h~~~v~~~~~-~~~~~~s~s~D-----------~~i~~W~~~~~~~~~~~ 312 (362)
+. .+........++.. .+.+++.|+.+ ..+.+||.....+..+.
T Consensus 447 ~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 447 FASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp ECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred EccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 21 22111111122333 45578888754 46888986555554444
No 255
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.53 E-value=0.029 Score=46.87 Aligned_cols=187 Identities=13% Similarity=0.146 Sum_probs=113.5
Q ss_pred cCceeEEEEecCCCEEE-EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEE-eCCCeEEEEeCCCCCCc
Q 044557 142 VDAVSALALTKDETLLY-SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTG-SADKKIKVWRRSPGNKK 219 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~-~~dg~i~iw~~~~~~~~ 219 (362)
.+.+..++++|++..|+ +...++.|...|.. ++.++.+...-......|++.+++.++.+ -.++.+.++++......
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 35688999999876554 46778889999988 77777664333346788999888886544 35678888887654321
Q ss_pred c--eeeh-hh--hccccceeEEEEecCCCEEEEEcCCCcEEEEeccC--CCCcEEEEEe--e--cCccceeEEEEEeCC-
Q 044557 220 H--SLVD-VL--ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE--DDGNILVVGA--L--RGHTKSILCMAVVSD- 287 (362)
Q Consensus 220 ~--~~~~-~~--~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~--~--~~h~~~v~~~~~~~~- 287 (362)
. .... .+ ...+...-.|+|.|+++.|+++.......+|.... ......+... + ..+...+..+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 1 1111 01 12355678999999998888887766656665541 1111222211 0 012234567778653
Q ss_pred --eEEEeeCCCcEEEeeCCCCceeeeeEec-CC------CCcEEEEEeeecC
Q 044557 288 --LVCSGSADKTIRIWRGIDRNYTCLAVLE-GH------RGPVKCLAAAIDN 330 (362)
Q Consensus 288 --~~~s~s~D~~i~~W~~~~~~~~~~~~l~-~h------~~~v~~~~~~~~~ 330 (362)
+++...+.+.+-..|...+ ......|. |. -..-..++|.+++
T Consensus 185 g~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G 235 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASG 235 (255)
T ss_dssp TEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred CeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence 6777777888888885332 22223343 21 1256788887654
No 256
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.48 E-value=0.035 Score=46.57 Aligned_cols=174 Identities=11% Similarity=0.051 Sum_probs=100.5
Q ss_pred ceeEEEEecCCCEEEEE-ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEEEEeC---CCeEEEEeCCCCCC
Q 044557 144 AVSALALTKDETLLYSV-SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVYTGSA---DKKIKVWRRSPGNK 218 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~~---dg~i~iw~~~~~~~ 218 (362)
....++++|++..|+.+ ...+.|.+++...... ..+..........+++.|+ +.++.+.. .+.|..++.+.. .
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~ 157 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-N 157 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-C
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-C
Confidence 45788999876555544 5567999999865332 2222112245688999984 66655443 468888887532 2
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADK 296 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~ 296 (362)
...+.. ..-.....++++|++..|+.+ ...+.|..++..... ...+ ..+ ......++...+ ++++....+
T Consensus 158 ~~~~~~---~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~--~~~-~~~P~gi~~d~~~lyva~~~~~ 229 (267)
T 1npe_A 158 RRILAQ---DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG--RRKV--LEG-LQYPFAVTSYGKNLYYTDWKTN 229 (267)
T ss_dssp CEEEEC---TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE--EEEE--EEC-CCSEEEEEEETTEEEEEETTTT
T ss_pred cEEEEE---CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc--eEEE--ecC-CCCceEEEEeCCEEEEEECCCC
Confidence 222211 112346789999987766555 456789999986421 1111 111 122345666655 455555668
Q ss_pred cEEEeeCCCCceeeeeEecCC-CCcEEEEEeeec
Q 044557 297 TIRIWRGIDRNYTCLAVLEGH-RGPVKCLAAAID 329 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~~l~~h-~~~v~~~~~~~~ 329 (362)
.|..++.. .++.+..+... ......+++.|+
T Consensus 230 ~v~~~d~~--~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 230 SVIAMDLA--ISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEEETT--TTEEEEEECCSSCCCCCCEEEECS
T ss_pred eEEEEeCC--CCCceEEEccccccccceeeecCc
Confidence 88888843 34445555422 224566666654
No 257
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.45 E-value=0.082 Score=50.05 Aligned_cols=71 Identities=13% Similarity=0.039 Sum_probs=47.4
Q ss_pred EEEEecCCCEEEEEEC--------------------C----CcEEEEECCCceEEEeeecc-Cc--------ccEEEEEE
Q 044557 147 ALALTKDETLLYSVSW--------------------D----RTIKIWRTSDFKCLESITNA-HD--------DAINAVAL 193 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~--------------------d----~~i~iwd~~~~~~~~~~~~~-h~--------~~v~~v~~ 193 (362)
.++++|+..+++.+.. | +.|..+|..+++.+-.++.. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4567787777777663 2 58999999999877665432 21 1221 122
Q ss_pred c-CCC----cEEEEeCCCeEEEEeCCCCCC
Q 044557 194 S-DDG----DVYTGSADKKIKVWRRSPGNK 218 (362)
Q Consensus 194 ~-~~~----~~~s~~~dg~i~iw~~~~~~~ 218 (362)
. .+| .++.++.+|.+.++|.++++.
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 1 355 266788999999999988764
No 258
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.43 E-value=0.012 Score=55.04 Aligned_cols=193 Identities=14% Similarity=0.132 Sum_probs=113.6
Q ss_pred ecCCCEEEEEEC-CCcEEEEECCCceEEEeeeccCcccEEEEEE-c-CCCc-EEEEe------------------CCCeE
Q 044557 151 TKDETLLYSVSW-DRTIKIWRTSDFKCLESITNAHDDAINAVAL-S-DDGD-VYTGS------------------ADKKI 208 (362)
Q Consensus 151 ~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~-~-~~~~-~~s~~------------------~dg~i 208 (362)
.+||++|+.... +.+|.+.|+.+.++...+..........+++ . |++. ++.++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 358888777665 4579999999999887554444456788887 4 7776 55542 34578
Q ss_pred EEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC---------------cEEEEeccC-------CC---
Q 044557 209 KVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR---------------SIIVWEKEE-------DD--- 263 (362)
Q Consensus 209 ~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~---------------~i~~wd~~~-------~~--- 263 (362)
.+.|.++.+...++ .--. .-..++++|||+++++.+.+. .|.+.+... ++
T Consensus 178 tvID~~t~~v~~qI----~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 178 TAVDADKWEVAWQV----LVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEETTTTEEEEEE----EESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred EEEECCCCeEEEEE----EeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 88888765322221 1101 234578999999999888664 244444211 00
Q ss_pred -CcEEEEEeec--C--------ccceeEEEEEeCC---eEEEeeCCCcEEEeeCCCCc----------eeeeeEecCCCC
Q 044557 264 -GNILVVGALR--G--------HTKSILCMAVVSD---LVCSGSADKTIRIWRGIDRN----------YTCLAVLEGHRG 319 (362)
Q Consensus 264 -~~~~~~~~~~--~--------h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~~~~----------~~~~~~l~~h~~ 319 (362)
....++-.-. + -....-++.++++ .++++..+.+|.++|..... ...+..+. -..
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~ 331 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGL 331 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCS
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCC
Confidence 0011111000 0 0112234566655 57778889999999964210 01222332 123
Q ss_pred cEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 320 PVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
....++|++++ +..++--.|+.|-+||++.
T Consensus 332 gP~h~aF~~dG---------~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 332 GPLHTAFDGRG---------NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CEEEEEECTTS---------EEEEEETTTTEEEEEEHHH
T ss_pred CcceEEECCCC---------eEEEEEecCCcEEEEEhhH
Confidence 46778887654 3455678899999999853
No 259
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.34 E-value=0.053 Score=45.47 Aligned_cols=192 Identities=11% Similarity=0.041 Sum_probs=111.4
Q ss_pred ceeEEEEecCCCEEEEE-ECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEE-EEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDETLLYSV-SWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVY-TGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~-s~~~dg~i~iw~~~~~~~~~ 220 (362)
.+..+++++++..|+.+ ..++.|..++.........+. ........+++.++ +.++ +-...+.|.+++.+... ..
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~ 114 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RR 114 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE-CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EE
Confidence 45788999976655544 457899999987654332221 22245788999985 4554 44567899999986432 22
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcC---CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGAC---DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSA 294 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~ 294 (362)
.+.. ........++++|++..|+.+.. .+.|..++...... ..+. .........+++++ + ++++-..
T Consensus 115 ~~~~---~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~~~~--~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 115 VLFD---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILA--QDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp EEEC---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEE--CTTCSCEEEEEEETTTTEEEEEETT
T ss_pred EEEE---CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--EEEE--ECCCCCCcEEEEcCCCCEEEEEECC
Confidence 2211 11134578999997776665554 36788887753221 1221 11223456777764 3 5567777
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
.+.|..++... ......+.+ ......+++ ++ +.+.++....+.|..+|..
T Consensus 188 ~~~I~~~~~~g--~~~~~~~~~-~~~P~gi~~--d~--------~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 188 THRAECLNPAQ--PGRRKVLEG-LQYPFAVTS--YG--------KNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp TTEEEEEETTE--EEEEEEEEC-CCSEEEEEE--ET--------TEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEecCC--CceEEEecC-CCCceEEEE--eC--------CEEEEEECCCCeEEEEeCC
Confidence 78899998532 222222222 122345543 22 2455555556778888764
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.33 E-value=0.0077 Score=58.07 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=44.0
Q ss_pred EEEEecCCCEEEEEEC-CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEe-CC-----CeEEEEeCCCC
Q 044557 147 ALALTKDETLLYSVSW-DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGS-AD-----KKIKVWRRSPG 216 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~-~d-----g~i~iw~~~~~ 216 (362)
++++.+++++++.|+. +..+.+||..+.+....-.......-.+++..++++ ++.|+ .+ ..+.+||..+.
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 4667789999999884 468999998876543321111111123455666777 45566 34 57899998764
No 261
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.32 E-value=0.07 Score=46.42 Aligned_cols=191 Identities=8% Similarity=-0.012 Sum_probs=98.1
Q ss_pred eeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh
Q 044557 145 VSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~ 224 (362)
+..+.+.+++..++.+ .++.|.. ....++....+...+...+..+++.+++.++..+.+|.+..-+ +.+....+...
T Consensus 124 ~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~-d~gG~tW~~~~ 200 (327)
T 2xbg_A 124 PRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTW-EPGQTAWEPHN 200 (327)
T ss_dssp EEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEE-CTTCSSCEEEE
T ss_pred eEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEe-CCCCCceeECC
Confidence 3456666666666554 4565422 1122333333333455678899999988877766666554432 11111111111
Q ss_pred hhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeec----CccceeEEEEEeC-CeEEEeeCCCcEE
Q 044557 225 VLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALR----GHTKSILCMAVVS-DLVCSGSADKTIR 299 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----~h~~~v~~~~~~~-~~~~s~s~D~~i~ 299 (362)
......+..+++.+++..++ ++.+|.++.++... +. ....+. .+...+.++.+.+ ..+..++.++.|.
T Consensus 201 --~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~--G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~ 273 (327)
T 2xbg_A 201 --RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDN--SE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL 273 (327)
T ss_dssp --CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTE--EE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred --CCCCCccceeEECCCCCEEE-EeCCceEEEecCCC--CC--eeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence 12345678899999887654 45578777663211 11 111111 1223467777753 3444445577773
Q ss_pred EeeCC-CCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 300 IWRGI-DRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 300 ~W~~~-~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+... ...+..+....++...+.++.|.+++ . ++.++.+|.|.-++-
T Consensus 274 -~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~---------~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 274 -CSQDGGQTWQQDVDVKKVPSNFYKILFFSPD---------Q-GFILGQKGILLRYVT 320 (327)
T ss_dssp -EESSTTSSCEECGGGTTSSSCCCEEEEEETT---------E-EEEECSTTEEEEECC
T ss_pred -EeCCCCcccEEcCccCCCCCCeEEEEEECCC---------c-eEEEcCCceEEEEcC
Confidence 3211 23343332222344567788886321 2 445567898766653
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.29 E-value=0.069 Score=45.85 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=88.2
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe--CCC-eEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS--ADK-KIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~--~dg-~i~iw~~~~~~~~ 219 (362)
.....++++++++++++-..++.|..||.... ....+. ....+..+++.++|+++.+. .++ .|..++..++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 34678899999997777667899999998754 323232 23467889999999866554 223 4666676555421
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEe------ecCccceeEEEEEeCC-eEEEe
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGA------LRGHTKSILCMAVVSD-LVCSG 292 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~h~~~v~~~~~~~~-~~~s~ 292 (362)
.+.. ... ......++..+++..+++-..++.|..+|............. ..+.......+...+. ++++-
T Consensus 109 -~~~~-~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d 185 (306)
T 2p4o_A 109 -TLLT-LPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN 185 (306)
T ss_dssp -EEEE-CTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE
T ss_pred -EEEe-CCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEe
Confidence 1111 111 112234444555555555556888888886532111111100 0011112234455554 56677
Q ss_pred eCCCcEEEeeCC
Q 044557 293 SADKTIRIWRGI 304 (362)
Q Consensus 293 s~D~~i~~W~~~ 304 (362)
+..+.|..++..
T Consensus 186 ~~~~~I~~~~~~ 197 (306)
T 2p4o_A 186 TEKMLLLRIPVD 197 (306)
T ss_dssp TTTTEEEEEEBC
T ss_pred CCCCEEEEEEeC
Confidence 778889999864
No 263
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.28 E-value=0.043 Score=49.06 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=93.8
Q ss_pred ecCCCEEEEEECCCcEEEEECCCceEEEeeeccC---cccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcce------
Q 044557 151 TKDETLLYSVSWDRTIKIWRTSDFKCLESITNAH---DDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHS------ 221 (362)
Q Consensus 151 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~------ 221 (362)
..++..++.+- ++.||.-++......+.+...+ ...+..+..+|+|.+++...+..|.|-.+-.+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 45666666554 5888888877433333333221 2357789999999988888888999988763321111
Q ss_pred ---e-ehhhh----ccccceeEEEEec---CCCEEEEEcCCCcEEEEeccCCCCcEEEEEe------ecCccceeEEEEE
Q 044557 222 ---L-VDVLE----RHNSGINALALSC---DGSVLYSGACDRSIIVWEKEEDDGNILVVGA------LRGHTKSILCMAV 284 (362)
Q Consensus 222 ---~-~~~~~----~h~~~v~~i~~s~---~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~h~~~v~~~~~ 284 (362)
. ...+. ....+|..+.|+| .+..|++=..|++||+||+.........+.. .......|.+++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 0 00111 1256799999999 4678999999999999999753322222211 1122356788889
Q ss_pred eCC----eEEEeeCCCcEEE
Q 044557 285 VSD----LVCSGSADKTIRI 300 (362)
Q Consensus 285 ~~~----~~~s~s~D~~i~~ 300 (362)
.++ ++++.+..|-|.-
T Consensus 188 g~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEE
T ss_pred cCCCcEEEEEecCCCCCEEE
Confidence 765 4556667777753
No 264
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.18 Score=49.55 Aligned_cols=159 Identities=9% Similarity=0.076 Sum_probs=94.0
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeee-ccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcce
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT-NAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
..|.++...+++++.+ |+.++-|..++..+++...... ......|.++...++|.+..|+. +-+..|+..++....
T Consensus 407 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~- 483 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIH- 483 (781)
T ss_dssp SBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCE-
T ss_pred cceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEe-
Confidence 5688888888887655 6777788899987765433211 11345788998888898888877 568888876653221
Q ss_pred eehhh--hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC-ccceeEEEEEeCC-eEEEeeCCCc
Q 044557 222 LVDVL--ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG-HTKSILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 222 ~~~~~--~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~s~s~D~~ 297 (362)
..... ......|.++...++|...+ |..++-+..|+.... .........+ ....|.++....+ .+..++.+|-
T Consensus 484 ~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Gl 560 (781)
T 3v9f_A 484 HYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ--LVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGL 560 (781)
T ss_dssp EECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC--EEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEE
T ss_pred cccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC--eEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCc
Confidence 11100 01135688898888877555 444344777876532 2222111111 1245778877543 4444555555
Q ss_pred EEEeeCCCCc
Q 044557 298 IRIWRGIDRN 307 (362)
Q Consensus 298 i~~W~~~~~~ 307 (362)
|..|+.....
T Consensus 561 v~~~d~~~~~ 570 (781)
T 3v9f_A 561 VCFPSARNFD 570 (781)
T ss_dssp EEESCTTTCC
T ss_pred eEEECCCCCc
Confidence 4788754433
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.13 E-value=0.086 Score=51.62 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=81.5
Q ss_pred eEEEEecCCCEEEEEECC-----CcEEEEECCCceE--EEeeeccCcccEEEEEEcCCCc-EEEEe---CCCeEEEEeCC
Q 044557 146 SALALTKDETLLYSVSWD-----RTIKIWRTSDFKC--LESITNAHDDAINAVALSDDGD-VYTGS---ADKKIKVWRRS 214 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~--~~~~~~~h~~~v~~v~~~~~~~-~~s~~---~dg~i~iw~~~ 214 (362)
..++|+||++.|+-...| ..|.++++.++.. ...+...+......+.|+|+|+ |+..+ ....|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 356799999877766655 3578888876532 1122222334566789999997 44322 23468888887
Q ss_pred CCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC--C--cEEEEeccCCCCcEE-EEEeecCccceeEEEEEeCC-e
Q 044557 215 PGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD--R--SIIVWEKEEDDGNIL-VVGALRGHTKSILCMAVVSD-L 288 (362)
Q Consensus 215 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d--~--~i~~wd~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~-~ 288 (362)
++.....+............++.|+.++.+++....+ + .|..+++........ ++. ......+..+.+.++ +
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--~~~~~~l~~~~~~~~~l 381 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--HSEDVFMESIAVRSNYL 381 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--CCSSEEEEEEEECSSEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--CCCCcEEEEEEEECCEE
Confidence 6532110011122233444555554444444454444 3 455566543211111 111 111124556666655 5
Q ss_pred EEEeeCCCcEEEee
Q 044557 289 VCSGSADKTIRIWR 302 (362)
Q Consensus 289 ~~s~s~D~~i~~W~ 302 (362)
+++...|+..++|-
T Consensus 382 v~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 382 VVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEEeCCEEEEEE
Confidence 67777888776663
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.11 E-value=0.25 Score=48.56 Aligned_cols=278 Identities=11% Similarity=0.102 Sum_probs=141.0
Q ss_pred cceeeeEec-CcEEEEecCCCeEEEeecCCCCcccceeeeccc-eeEEeecceeEEEEEcC-ceeEEEecCCcEEEEecC
Q 044557 20 SYVSSLALA-GKFLYTGSSDNEVRSWDCNTFSSELDQEFLSNN-NIVAVGKGAVKSLVVLA-DKLFSAHQDHKIRVWKIN 96 (362)
Q Consensus 20 ~~V~~l~~~-~~~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~-~~l~s~~~dg~i~~w~~~ 96 (362)
..|.+|..+ ...|..|+.. -+.+||..+.... .+.... .........|.++.... +.|..++..+-|.+++..
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~---~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFT---NFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEE---C-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETT
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEE---EEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCC
Confidence 457777764 2234444444 6778886542210 000000 00011234566776644 457778775667888875
Q ss_pred CCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceE
Q 044557 97 NQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC 176 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~ 176 (362)
..............+.... ... .-....|.++...+++.+. .|+.++-|..++......
T Consensus 287 ~~~~~~~~~~~f~~~~~~~----------~~~----------~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~ 345 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGD----------NNY----------SLSNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTF 345 (781)
T ss_dssp CC---------CEEECBCS----------STT----------SBSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSC
T ss_pred CCeeeeeeccccccccCCC----------CCC----------CCCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcc
Confidence 4321100000000000000 000 0123467888888888754 567778888888765432
Q ss_pred EEee--------eccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 177 LESI--------TNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 177 ~~~~--------~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
.... .......|.+++..++|.+..|+.++-|..|+..++... ............|.++...++|.. ..|
T Consensus 346 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~l-Wig 423 (781)
T 3v9f_A 346 HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEGNL-WFG 423 (781)
T ss_dssp EEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTSCE-EEE
T ss_pred eeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCCCE-EEE
Confidence 2110 011234689999888899999887777888887543211 010001123456888888777664 446
Q ss_pred cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcEEEeeCCCCceeeeeEec---CCCCcEEEE
Q 044557 249 ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTIRIWRGIDRNYTCLAVLE---GHRGPVKCL 324 (362)
Q Consensus 249 ~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~~W~~~~~~~~~~~~l~---~h~~~v~~~ 324 (362)
..++-+..++..+. .........-....|.++....+ .+..|+. +.+..++............. .....|.++
T Consensus 424 t~~~Gl~~~~~~~~--~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 500 (781)
T 3v9f_A 424 TYLGNISYYNTRLK--KFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI 500 (781)
T ss_dssp ETTEEEEEECSSSC--EEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE
T ss_pred eccCCEEEEcCCCC--cEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEE
Confidence 66667888886542 12111100112356788877643 5555555 56778875433332221111 113567777
Q ss_pred Eee
Q 044557 325 AAA 327 (362)
Q Consensus 325 ~~~ 327 (362)
...
T Consensus 501 ~~d 503 (781)
T 3v9f_A 501 AQD 503 (781)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 267
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.03 E-value=0.18 Score=45.73 Aligned_cols=113 Identities=10% Similarity=0.108 Sum_probs=65.8
Q ss_pred CceeEEEEecCCCEEEEEEC-CC----cEEEEECCCceEE--EeeeccCcccEEEEEEcC-CCcEEEE-eCCCeEEEEeC
Q 044557 143 DAVSALALTKDETLLYSVSW-DR----TIKIWRTSDFKCL--ESITNAHDDAINAVALSD-DGDVYTG-SADKKIKVWRR 213 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~-d~----~i~iwd~~~~~~~--~~~~~~h~~~v~~v~~~~-~~~~~s~-~~dg~i~iw~~ 213 (362)
.....++++++++.|+.+.. ++ .+.+.+. .+... ..+. .......+++.| ++.++.+ ..++.|..++.
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 34678999999996666554 22 2333332 22111 1121 112345788998 7776544 46789999998
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccC
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEE 261 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~ 261 (362)
...... .+. ... .......++|+|+|++|+ +-...+.|..++...
T Consensus 256 ~~~~~~-~~~-~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 256 TTQETT-PLF-TIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TTTEEE-EEE-ECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCcEE-EEE-EcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 754211 111 111 113456899999999555 445677898887653
No 268
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.94 E-value=0.072 Score=46.34 Aligned_cols=154 Identities=9% Similarity=0.111 Sum_probs=89.1
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEEC--CCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCc
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRT--SDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~ 219 (362)
...+..+.+.|++.+++.+...+..+-+|- .+++.+. ......+..+++.+++.++.++.+|.+.+.+.+.+. .
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~---~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~-t 237 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN---RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSE-N 237 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE---CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEE-E
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC---CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCC-e
Confidence 346788999999888876654444444442 3344432 234567888999999998888888988776422121 0
Q ss_pred ceeehhh-hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe-CCeEEEeeCCCc
Q 044557 220 HSLVDVL-ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV-SDLVCSGSADKT 297 (362)
Q Consensus 220 ~~~~~~~-~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~s~s~D~~ 297 (362)
....... ..+...+.++++.+++..++++. ++.| ++....+. ....+.........+.++.+. ++.++.++.+|.
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~-tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~ 314 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ-TWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGI 314 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS-SCEECGGGTTSSSCCCEEEEEETTEEEEECSTTE
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc-ccEEcCccCCCCCCeEEEEEECCCceEEEcCCce
Confidence 0001000 01223578888988777666554 6767 34433322 222211111223456777774 557778888898
Q ss_pred EEEee
Q 044557 298 IRIWR 302 (362)
Q Consensus 298 i~~W~ 302 (362)
|.-++
T Consensus 315 i~~~~ 319 (327)
T 2xbg_A 315 LLRYV 319 (327)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 76665
No 269
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.88 E-value=0.2 Score=43.77 Aligned_cols=195 Identities=15% Similarity=0.165 Sum_probs=113.5
Q ss_pred CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC----Cc---EE--EEeC--CCeEEEEeCCCCCCcce
Q 044557 153 DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD----GD---VY--TGSA--DKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 153 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~----~~---~~--s~~~--dg~i~iw~~~~~~~~~~ 221 (362)
...+++....++-+.+||+ +++.++.+.. +.++.|.+-|+ |+ ++ +.-. +++|.+|++........
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 3455666677889999999 7777776642 34555555442 21 33 3334 58999997743322111
Q ss_pred eehhh--h-ccc-cceeEEEE--ecC-CC-EEEEEcCCCcEEEEeccCC-C--CcEEEEEeecCccceeEEEEEeC--Ce
Q 044557 222 LVDVL--E-RHN-SGINALAL--SCD-GS-VLYSGACDRSIIVWEKEED-D--GNILVVGALRGHTKSILCMAVVS--DL 288 (362)
Q Consensus 222 ~~~~~--~-~h~-~~v~~i~~--s~~-~~-~l~s~~~d~~i~~wd~~~~-~--~~~~~~~~~~~h~~~v~~~~~~~--~~ 288 (362)
.+... . ... ..+..+++ +|. +. +++....+|.+..|++... . .....+..+.-- ..+-.+...+ ..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCe
Confidence 11110 0 011 34555666 664 43 7889999999999998532 1 223344454432 3455566654 48
Q ss_pred EEEeeCCCcEEEeeCCCC---ceeeeeEe-cCCC-CcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 289 VCSGSADKTIRIWRGIDR---NYTCLAVL-EGHR-GPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 289 ~~s~s~D~~i~~W~~~~~---~~~~~~~l-~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
|..+-+|..|-.++.... ..+.+..+ .+|- ..+..+++.+..+ ..+++|+|.=.+.+.-+||.+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~-----g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD-----GKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG-----GCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC-----CCEEEEEEcCCCCEEEEEECC
Confidence 889999976544443222 23445444 2332 3688888864321 234677777577899999985
No 270
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.44 E-value=0.0025 Score=59.66 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=69.2
Q ss_pred ceeEEEEecCCCEEEEEE-CCCcEEEEECCCce------------EEEeeeccCcccEEEEEEcCCCcE-EEEeCCCeEE
Q 044557 144 AVSALALTKDETLLYSVS-WDRTIKIWRTSDFK------------CLESITNAHDDAINAVALSDDGDV-YTGSADKKIK 209 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~------------~~~~~~~~h~~~v~~v~~~~~~~~-~s~~~dg~i~ 209 (362)
..-++.++|||+++++++ .+.+|.++|+.+.+ ....+. -....+.++|+|+|.+ ++.-.|++|.
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVV 355 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceEEECCCCeEEEEEecCCcEE
Confidence 456789999999877665 67899999998653 233332 2345788999999973 4666899999
Q ss_pred EEeCCCC------CCcceeehhhhccccce-----eEEEEecCCCEEEEEcC
Q 044557 210 VWRRSPG------NKKHSLVDVLERHNSGI-----NALALSCDGSVLYSGAC 250 (362)
Q Consensus 210 iw~~~~~------~~~~~~~~~~~~h~~~v-----~~i~~s~~~~~l~s~~~ 250 (362)
+||++.+ +.....+..+..|-.+- ..+.++|||++|+++..
T Consensus 356 kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9998762 11122333333333221 22345799999998853
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.43 E-value=0.31 Score=44.18 Aligned_cols=152 Identities=7% Similarity=0.051 Sum_probs=90.3
Q ss_pred CceeEEEEec-CCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-C----eEEEEeCCC
Q 044557 143 DAVSALALTK-DETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-K----KIKVWRRSP 215 (362)
Q Consensus 143 ~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-g----~i~iw~~~~ 215 (362)
.....++++| ++..|+.+...+.|+.+|+....... +.. .......+++++++. ++.+... + .+.+++..
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~- 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE- 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-Eec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-
Confidence 3567889998 45566666655899999998765433 322 344578999999987 6665542 1 33334432
Q ss_pred CCCcceeehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEE
Q 044557 216 GNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCS 291 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s 291 (362)
+..... ..+.. ......++++| +|..+++-..++.|..++.... ....+..... ......+++++ + ++++
T Consensus 214 g~~~~~--~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~--~~~~~~~~~~-~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 214 SGFKVI--TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ--ETTPLFTIQD-SGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp GTSCSE--EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT--EEEEEEECSS-SSCCEEEEECTTSSEEEEE
T ss_pred Cceeee--eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC--cEEEEEEcCC-CCcceeEEEcCCCCEEEEE
Confidence 221100 01111 22356788999 6666666667788999987642 2212222222 23356777765 3 5666
Q ss_pred eeCCCcEEEeeC
Q 044557 292 GSADKTIRIWRG 303 (362)
Q Consensus 292 ~s~D~~i~~W~~ 303 (362)
-...+.|..++.
T Consensus 288 d~~~~~I~~~~~ 299 (430)
T 3tc9_A 288 VVNQHYILRSDY 299 (430)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCCEEEEEeC
Confidence 667788888764
No 272
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.39 E-value=0.38 Score=41.63 Aligned_cols=116 Identities=11% Similarity=0.094 Sum_probs=75.6
Q ss_pred eeEEEE---ecCCCEEEEEE-------------CCCcEEEEECC---CceEEEeeecc------------CcccEEEEEE
Q 044557 145 VSALAL---TKDETLLYSVS-------------WDRTIKIWRTS---DFKCLESITNA------------HDDAINAVAL 193 (362)
Q Consensus 145 v~~~~~---~~~~~~l~s~s-------------~d~~i~iwd~~---~~~~~~~~~~~------------h~~~v~~v~~ 193 (362)
+..+.+ .|+++++++.. .+..|..+|+. +++.+...... -......++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 367888 68877777543 26889999998 66654433211 1124788999
Q ss_pred cCCCc-EEEEeCC-CeEEEEeCCCCCCcceeehhh--hccccceeEEEEecCCCEEEEEcCCCcEEEEeccC
Q 044557 194 SDDGD-VYTGSAD-KKIKVWRRSPGNKKHSLVDVL--ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEE 261 (362)
Q Consensus 194 ~~~~~-~~s~~~d-g~i~iw~~~~~~~~~~~~~~~--~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~ 261 (362)
.++|. +++++.- +.|...+.+.. ......... .......+.|++.|+|..|++...++.+..+|+..
T Consensus 145 D~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 145 DRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 99998 5567766 77666655422 111111000 11123467899999999999887799999999874
No 273
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.39 E-value=0.67 Score=43.66 Aligned_cols=72 Identities=10% Similarity=0.101 Sum_probs=39.9
Q ss_pred cCcEEEEecC-CCeEEEeec-CCCCcccceeeeccceeEE--eecceeEEEEEcCceeEEEecCCcEEEEecCCCC
Q 044557 28 AGKFLYTGSS-DNEVRSWDC-NTFSSELDQEFLSNNNIVA--VGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQE 99 (362)
Q Consensus 28 ~~~~l~t~s~-Dg~i~vWd~-~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~ 99 (362)
.+..++.++. ++.|.-.|. .+................. ........+.+.++.++.++.|+.|..+|..+++
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGK 136 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCC
Confidence 3556666666 888888897 6654322211111000000 0000011234457789999999999999987765
No 274
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.35 E-value=0.57 Score=42.42 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=62.5
Q ss_pred CceeEEEEecCCCEEEEEECC---Cc-EEEEECCCc-eEEEeeeccCcccEEEEEEcC-CCcEEEE-eCCCeEEEEeCCC
Q 044557 143 DAVSALALTKDETLLYSVSWD---RT-IKIWRTSDF-KCLESITNAHDDAINAVALSD-DGDVYTG-SADKKIKVWRRSP 215 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d---~~-i~iwd~~~~-~~~~~~~~~h~~~v~~v~~~~-~~~~~s~-~~dg~i~iw~~~~ 215 (362)
.....++++++++++++-... .. +...+.... .....+. .......+++.| +|.++.+ ..++.|..++..+
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~ 259 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT 259 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC
Confidence 356889999999954443321 11 222222111 1001111 122345678888 7776654 4667899998875
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEecc
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKE 260 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~ 260 (362)
+.....+... . ....-..++|+|+|.+|+.+ ...+.|+.++..
T Consensus 260 g~~~~~~~~~-~-~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 260 GTLTEEEVMM-D-TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CCEEEEEEEC-S-CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CeEEEEEecc-C-CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 5421112111 1 11122469999999955554 456789888765
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.34 E-value=0.42 Score=40.82 Aligned_cols=177 Identities=16% Similarity=0.023 Sum_probs=94.3
Q ss_pred ceeEEEEecCCCEEEEEECCC--cEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEe-CCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDETLLYSVSWDR--TIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGS-ADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~-~dg~i~iw~~~~~~~~~ 220 (362)
.+..+++.++++++++..... .|..++..+++...............++..+++.++... .++.|..+|...+....
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v 152 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI 152 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeE
Confidence 467889999999766654433 466667677664332221222334556666666654444 58888888875431110
Q ss_pred ee-eh-----hhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCC-C-CcEEEEEeecCccceeEEEEEe--CCeE
Q 044557 221 SL-VD-----VLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEED-D-GNILVVGALRGHTKSILCMAVV--SDLV 289 (362)
Q Consensus 221 ~~-~~-----~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~-~-~~~~~~~~~~~h~~~v~~~~~~--~~~~ 289 (362)
.. .. .....-...+.| +|+++.|+.+ ...+.|..|+.... . ......... .....++++ +.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~ 226 (306)
T 2p4o_A 153 WLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLY 226 (306)
T ss_dssp EEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEE
T ss_pred EEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEE
Confidence 00 00 000111123444 7888766655 45778999998641 1 011111111 123345554 3466
Q ss_pred EEeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 290 CSGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 290 ~s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
++....+.|.+++.. .....+..+.......++++|.
T Consensus 227 va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 227 GATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp EECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred EEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence 776777889999843 2222232333233568889886
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.33 E-value=0.59 Score=42.35 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=86.7
Q ss_pred CceeEEEEecC--CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCC-----eEEEEeCCC
Q 044557 143 DAVSALALTKD--ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADK-----KIKVWRRSP 215 (362)
Q Consensus 143 ~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg-----~i~iw~~~~ 215 (362)
.....++++|+ ...|+.+...+.|+.++..+++..... ........++++++|.++.+...+ .+...+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence 34678999984 444555544489999999877654432 233457899999999876655422 233333221
Q ss_pred CCCcceeehhhhccccceeEEEEec-CCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEE
Q 044557 216 GNKKHSLVDVLERHNSGINALALSC-DGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCS 291 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s 291 (362)
........ . .......++++| +|..+++-..++.|+.++...+... ..+... +....-..+++++ + ++++
T Consensus 217 ~~~~~~~~---~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-~~~~~~-~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 217 GFTERLSL---C-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-EEEVMM-DTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TTCCEEEE---E-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-EEEEEC-SCCSSCEEEEECTTSSEEEEE
T ss_pred Ceeccccc---c-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-EEEecc-CCCCCcccEEEeCCCCEEEEE
Confidence 11100111 1 122345688899 6665556666788999987643210 111111 1112223577764 3 5666
Q ss_pred eeCCCcEEEeeC
Q 044557 292 GSADKTIRIWRG 303 (362)
Q Consensus 292 ~s~D~~i~~W~~ 303 (362)
-...+.|+.++.
T Consensus 291 d~~~~~I~~~~~ 302 (433)
T 4hw6_A 291 YNGKHCIYRVDY 302 (433)
T ss_dssp ETTTTEEEEEEB
T ss_pred eCCCCEEEEEeC
Confidence 677788888764
No 277
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.24 E-value=0.093 Score=46.94 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=77.0
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCce------------EEEeeecc-----CcccEEEEEEcCCC----cEEEE
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFK------------CLESITNA-----HDDAINAVALSDDG----DVYTG 202 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~------------~~~~~~~~-----h~~~v~~v~~~~~~----~~~s~ 202 (362)
.+.-+..+|+|++||..+ +..|.|-.+..+. ..+.+..+ ...+|..+.|+|-+ .+++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 455688899999999876 6789998876321 11222222 24679999999965 38899
Q ss_pred eCCCeEEEEeCCCCCCcce-eehh-----hhccccceeEEEEecCCCEEEEEc--CCCcEEEE
Q 044557 203 SADKKIKVWRRSPGNKKHS-LVDV-----LERHNSGINALALSCDGSVLYSGA--CDRSIIVW 257 (362)
Q Consensus 203 ~~dg~i~iw~~~~~~~~~~-~~~~-----~~~h~~~v~~i~~s~~~~~l~s~~--~d~~i~~w 257 (362)
..|++|++||+........ +... +......|.+++|.+++-.|+... ..|.|+..
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999986332221 1110 111225688999999998888855 77888654
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.64 E-value=0.94 Score=38.93 Aligned_cols=196 Identities=15% Similarity=0.033 Sum_probs=106.1
Q ss_pred CceeEEEEecCCCEEE-EEECCCcEEEEECCCc---eEEEeeeccCcccEEEEEEcC-CCcEE-EEeCCCeEEEEeCCCC
Q 044557 143 DAVSALALTKDETLLY-SVSWDRTIKIWRTSDF---KCLESITNAHDDAINAVALSD-DGDVY-TGSADKKIKVWRRSPG 216 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~---~~~~~~~~~h~~~v~~v~~~~-~~~~~-s~~~dg~i~iw~~~~~ 216 (362)
..+..++|++.+..|+ +-..++.|..+++... .....+....-.....+++.+ ++.++ +-...+.|.+++++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 3467889998665444 4455689999998751 222222211223457888885 45554 5567789999998643
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCC--CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACD--RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s 291 (362)
....+.. ........+++.|.+..|+.+... +.|...++.... ...+. .........+++++ . ++++
T Consensus 110 -~~~~~~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~--~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 110 -KRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLV--TENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp -SEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEE--CSSCSCEEEEEEETTTTEEEEE
T ss_pred -ceEEEEE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEEEE--ECCCCCceEEEEeccCCEEEEE
Confidence 2222221 122346789999977766655543 578777765321 22221 11223456777763 3 5566
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
-+..+.|..++........+....+.-....++++. + +.+.++-...+.|...+.
T Consensus 182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~--------~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--E--------DKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--T--------TEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--C--------CEEEEEECCCCeEEEEeC
Confidence 666778988886433222222221122335566663 1 234445445556666654
No 279
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.62 E-value=0.88 Score=38.51 Aligned_cols=153 Identities=8% Similarity=0.158 Sum_probs=75.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCce-----EEEeeeccCcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCC
Q 044557 153 DETLLYSVSWD-----RTIKIWRTSDFK-----CLESITNAHDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPG 216 (362)
Q Consensus 153 ~~~~l~s~s~d-----~~i~iwd~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~ 216 (362)
++++++.|+.+ ..+.+||..+.+ .+..+.... .. .+++.. +++ ++.|+.+ ..+.+||..+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r-~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRR-GL-AGATTL-GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCC-BS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCc-cc-eeEEEE-CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 45666666654 468899987654 222221111 11 122222 455 4455533 36888887654
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s 291 (362)
.- .....+......-.++. .+++.++.||.+ ..+..||..+. ....+..+........++.+.+.+++.
T Consensus 139 ~W--~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~ 212 (301)
T 2vpj_A 139 QW--SMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALLNDHIYVV 212 (301)
T ss_dssp EE--EEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred eE--EECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEECCEEEEE
Confidence 31 11111111111111222 267777777765 45788887653 333333332222222233344446667
Q ss_pred eeCC-----CcEEEeeCCCCceeeeeEe
Q 044557 292 GSAD-----KTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 292 ~s~D-----~~i~~W~~~~~~~~~~~~l 314 (362)
|+.+ ..+.+||.....+..+..+
T Consensus 213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 240 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTDSWTTVTSM 240 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred eCCCCCcccceEEEEeCCCCcEEECCCC
Confidence 7654 4678888766666555433
No 280
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.61 E-value=2.4 Score=43.49 Aligned_cols=143 Identities=13% Similarity=0.170 Sum_probs=89.6
Q ss_pred CCEEEEEE----------CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee
Q 044557 154 ETLLYSVS----------WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 154 ~~~l~s~s----------~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
..+|+.|. ..|.|.++++...+..........++|.+++-. +|++++| ...+|++|++...+... .
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~-ig~~l~vy~l~~~~~L~-~- 919 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLAS-INSTVRLYEWTTEKELR-T- 919 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEE-ETTEEEEEEECTTSCEE-E-
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEE-cCCEEEEEECCCCceEE-E-
Confidence 46888876 347899999865443222222346788888744 3565554 45799999986543111 1
Q ss_pred hhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE-eCCeEEEeeCCCcEEEee
Q 044557 224 DVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV-VSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 224 ~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~s~s~D~~i~~W~ 302 (362)
.. .+-..|..+.....+.+++.|..-..|.+...+.....+..+. -..+...++++.+ ..+.++.+..+|.+.+.+
T Consensus 920 -~~-~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~ 996 (1158)
T 3ei3_A 920 -EC-NHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-RDFNPNWMSAVEILDDDNFLGAENAFNLFVCQ 996 (1158)
T ss_dssp -EE-EECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE-ECCSCBCEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred -Ee-eccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE-eecccccEEEEEEEccCcEEEEcCCCcEEEEe
Confidence 01 1111233444444678999999888887766554444444443 3445667888887 467888899999999886
Q ss_pred C
Q 044557 303 G 303 (362)
Q Consensus 303 ~ 303 (362)
.
T Consensus 997 ~ 997 (1158)
T 3ei3_A 997 K 997 (1158)
T ss_dssp E
T ss_pred c
Confidence 4
No 281
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.36 E-value=1.1 Score=37.95 Aligned_cols=154 Identities=10% Similarity=0.147 Sum_probs=73.6
Q ss_pred CCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC-----eEEEEeCCCCCCcce
Q 044557 153 DETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADK-----KIKVWRRSPGNKKHS 221 (362)
Q Consensus 153 ~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg-----~i~iw~~~~~~~~~~ 221 (362)
++.+++.|+.+ ..+.+||..+.+....-.......-.+++.. +++ ++.|+.++ .+.+||+.+.. -.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNE--WF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTE--EE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCe--Ee
Confidence 55666666654 3588899877653221111111111122222 455 45565443 57788876542 11
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCC-------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeC
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACD-------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSA 294 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~ 294 (362)
....+......-..+. -+++.++.||.+ ..+..||..+. ....+..+........++.+.+.+++.|+.
T Consensus 138 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 213 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVLNNLLYAVGGH 213 (302)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred ecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEECCEEEEECCC
Confidence 1111111111112222 266777777653 34778887653 333333333222222233334446677765
Q ss_pred C-----CcEEEeeCCCCceeeeeE
Q 044557 295 D-----KTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 295 D-----~~i~~W~~~~~~~~~~~~ 313 (362)
+ ..+.+||.....+..+..
T Consensus 214 ~~~~~~~~~~~yd~~~~~W~~~~~ 237 (302)
T 2xn4_A 214 DGPLVRKSVEVYDPTTNAWRQVAD 237 (302)
T ss_dssp SSSSBCCCEEEEETTTTEEEEECC
T ss_pred CCCcccceEEEEeCCCCCEeeCCC
Confidence 4 357788876555655543
No 282
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.31 E-value=1.2 Score=37.89 Aligned_cols=155 Identities=7% Similarity=0.101 Sum_probs=74.1
Q ss_pred CCCEEEEEECC----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC------CeEEEEeCCCCCCcce
Q 044557 153 DETLLYSVSWD----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD------KKIKVWRRSPGNKKHS 221 (362)
Q Consensus 153 ~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d------g~i~iw~~~~~~~~~~ 221 (362)
++.+++.|+.+ ..+.+||..+.+....-.......-.+++.. +++ ++.|+.+ ..+.+||..+..- .
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W--~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESW--H 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEE--E
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCce--E
Confidence 55666667655 5788899887653221111111111112222 455 4556554 4588888776421 1
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcC---------CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEe
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGAC---------DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSG 292 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~ 292 (362)
....+......-..+. -+++.++.|+. -..+.+||..+. ....+..+......-..+...+.+++.|
T Consensus 132 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~G 207 (306)
T 3ii7_A 132 TKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFVKDKIFAVG 207 (306)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred eCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEECCEEEEEe
Confidence 1111111111111222 36677777764 345788888653 3333333322111122233334466666
Q ss_pred eCC-----CcEEEeeCCCCceeeeeEe
Q 044557 293 SAD-----KTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 293 s~D-----~~i~~W~~~~~~~~~~~~l 314 (362)
+.+ ..+.+||.....+..+..+
T Consensus 208 G~~~~~~~~~~~~yd~~~~~W~~~~~~ 234 (306)
T 3ii7_A 208 GQNGLGGLDNVEYYDIKLNEWKMVSPM 234 (306)
T ss_dssp CEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred CCCCCCCCceEEEeeCCCCcEEECCCC
Confidence 543 3577888666566555433
No 283
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.21 E-value=1.2 Score=42.29 Aligned_cols=144 Identities=9% Similarity=0.070 Sum_probs=80.8
Q ss_pred EEEEECCCcEEEEECCCceEEEeeeccCc---ccEEE-EEEcCCCcEEEEe------CCCeEEEEeCCCCCCcceeehhh
Q 044557 157 LYSVSWDRTIKIWRTSDFKCLESITNAHD---DAINA-VALSDDGDVYTGS------ADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 157 l~s~s~d~~i~iwd~~~~~~~~~~~~~h~---~~v~~-v~~~~~~~~~s~~------~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
++.++.|+.|.-+|..+++.+-....... ..+.+ -.+ .++.++.++ .+|.|.-+|..+++..-+.....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~ 202 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence 77788899999999999987654432210 01111 011 156666655 38999999999886433221100
Q ss_pred hc--------------------------------ccc-ce-eEEEEecCCCEEEEEcCC----------------CcEEE
Q 044557 227 ER--------------------------------HNS-GI-NALALSCDGSVLYSGACD----------------RSIIV 256 (362)
Q Consensus 227 ~~--------------------------------h~~-~v-~~i~~s~~~~~l~s~~~d----------------~~i~~ 256 (362)
.. +.. .+ ..+++.++...++.+..+ +.|..
T Consensus 203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A 282 (599)
T 1w6s_A 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (599)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence 00 000 01 135667777788877665 37888
Q ss_pred EeccCCCCcEEEEEeecCcc--------ceeEEEEE---eC---CeEEEeeCCCcEEEeeCC
Q 044557 257 WEKEEDDGNILVVGALRGHT--------KSILCMAV---VS---DLVCSGSADKTIRIWRGI 304 (362)
Q Consensus 257 wd~~~~~~~~~~~~~~~~h~--------~~v~~~~~---~~---~~~~s~s~D~~i~~W~~~ 304 (362)
+|..+++.. -......|. ..+. +.. .+ ..++.++.+|.+.+.|..
T Consensus 283 ld~~TG~~~--W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~ 341 (599)
T 1w6s_A 283 RDADTGEAK--FGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRT 341 (599)
T ss_dssp EETTTCCEE--EEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETT
T ss_pred EeCCCCcee--eEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECC
Confidence 888765422 112222221 1122 222 23 357778899999988853
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.08 E-value=0.2 Score=48.52 Aligned_cols=196 Identities=13% Similarity=0.007 Sum_probs=100.8
Q ss_pred CceeEEEEecCCCEEEEE-ECCCcEEEEECCCc---eEEEeeeccCcccEEEEEEcC-CCcE-EEEeCCCeEEEEeCCCC
Q 044557 143 DAVSALALTKDETLLYSV-SWDRTIKIWRTSDF---KCLESITNAHDDAINAVALSD-DGDV-YTGSADKKIKVWRRSPG 216 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~---~~~~~~~~~h~~~v~~v~~~~-~~~~-~s~~~dg~i~iw~~~~~ 216 (362)
..+..++|++.+..|+.+ ...+.|+.+++... .....+..........+++.+ ++.| ++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 356678898876666554 45578999988751 111111111112345677774 4454 44456788999987643
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcC-C-CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC---CeEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-D-RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS---DLVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d-~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~s 291 (362)
. ...++. ........|++.|.+.+|+.+.. . +.|..+++...... .+ ..........|++++ .++++
T Consensus 486 ~-~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l--~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 K-RKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SL--VTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp C-EEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EE--SCSSCSSCCCEEECTTTCCEEEE
T ss_pred c-eEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EE--EeCCCCCccEEEEeccCCEEEEE
Confidence 2 222221 11233567889987666655543 2 67777776532211 11 111122345567763 35666
Q ss_pred eeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 292 GSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 292 ~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
-+..+.|..++........+....+......++++. + ..++++....+.|..++.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd--~--------~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--E--------DKVFWTDIINEAIFSANR 612 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE--T--------TEEEEECSTTTCEEEEET
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE--C--------CEEEEEeCCCCeEEEEEc
Confidence 667778888875432222221111111122233332 1 245556666677877764
No 285
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.86 E-value=0.1 Score=42.29 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=61.8
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceEE------Eeeec-cCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCC
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCL------ESITN-AHDDAINAVALSDDGDVYTGSADKKIKVWRRSP 215 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~------~~~~~-~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~ 215 (362)
..+..++|+|++.+.++ .++.+.-.+..+.... ..+-. +-. ...++.|.|+|.|+++ .||.|.-++.-+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence 36679999999886655 5676555554331110 11100 111 1367889999998877 779887776532
Q ss_pred CCCcceeehh---hhc-cccceeEEEEecCCCEEEEEcCCCcEE
Q 044557 216 GNKKHSLVDV---LER-HNSGINALALSCDGSVLYSGACDRSII 255 (362)
Q Consensus 216 ~~~~~~~~~~---~~~-h~~~v~~i~~s~~~~~l~s~~~d~~i~ 255 (362)
... ...+.. +.. -=..+..|.+.|+|.+.+.. |+.++
T Consensus 117 ~~~-~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDT-DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STT-CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCC-CceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 211 111111 000 11467899999999888777 77653
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.78 E-value=2.1 Score=38.15 Aligned_cols=176 Identities=15% Similarity=0.040 Sum_probs=100.6
Q ss_pred CceeEEEEecC-CCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEEEEe--CCCeEEEEeCCCCCC
Q 044557 143 DAVSALALTKD-ETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVYTGS--ADKKIKVWRRSPGNK 218 (362)
Q Consensus 143 ~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~--~dg~i~iw~~~~~~~ 218 (362)
.....+++.+. +++.++-...+.|.+.+++.......+. ........+++.|. +.++-.. ..+.|...+++.. .
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~ 236 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-D 236 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-S
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-c
Confidence 34578888874 4455555567889999887654332222 23345789999985 5554433 2468888887533 2
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADK 296 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~ 296 (362)
...+.. ..-...+.|++++++..|+.+. ..+.|..+|+..... . .+....+.......+++..+ ++.+-...+
T Consensus 237 ~~~~~~---~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~-~~~~~~~~l~~P~gl~v~~~~lywtd~~~~ 311 (400)
T 3p5b_L 237 IYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-K-TILEDEKRLAHPFSLAVFEDKVFWTDIINE 311 (400)
T ss_dssp CEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-E-EEEECSSTTSSEEEEEEETTEEEEEESSSC
T ss_pred cEEEEE---CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-E-EEEeCCCCCCCCEEEEEeCCEEEEecCCCC
Confidence 222221 1123467899998887777664 567899998864322 2 22222222233456666655 566777778
Q ss_pred cEEEeeCCCCceeeeeEecCCCCcEEEEEee
Q 044557 297 TIRIWRGIDRNYTCLAVLEGHRGPVKCLAAA 327 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~ 327 (362)
.|..++... +..+..+........++++.
T Consensus 312 ~V~~~~~~~--G~~~~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 312 AIFSANRLT--GSDVNLLAENLLSPEDMVLF 340 (400)
T ss_dssp SEEEEESSS--CCCCEEEECSCSCEEEEEEE
T ss_pred eEEEEEcCC--CCceEEEecCCCCCceEEEE
Confidence 888776222 22233343333345555443
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=94.76 E-value=1.8 Score=37.34 Aligned_cols=156 Identities=8% Similarity=0.129 Sum_probs=94.0
Q ss_pred eEEEEecCCCEEEEEE-CCCcEEEEECCCceEEEeeeccC-------cccEEEEEE---cCCCcEEEEeC----------
Q 044557 146 SALALTKDETLLYSVS-WDRTIKIWRTSDFKCLESITNAH-------DDAINAVAL---SDDGDVYTGSA---------- 204 (362)
Q Consensus 146 ~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~h-------~~~v~~v~~---~~~~~~~s~~~---------- 204 (362)
.++.|++....|+.++ ..++|..|+...+....... .. ...+..+.+ .|+++|+....
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~-~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI-DGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC-TTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec-CCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 4677887666666666 78999999987554333221 21 113578999 57787654322
Q ss_pred ----CCeEEEEeCC---CCCCcceee--hhhhc-------cccceeEEEEecCCCEEEEEcCC-CcEEEEeccCCCCcEE
Q 044557 205 ----DKKIKVWRRS---PGNKKHSLV--DVLER-------HNSGINALALSCDGSVLYSGACD-RSIIVWEKEEDDGNIL 267 (362)
Q Consensus 205 ----dg~i~iw~~~---~~~~~~~~~--~~~~~-------h~~~v~~i~~s~~~~~l~s~~~d-~~i~~wd~~~~~~~~~ 267 (362)
+..|..||+. +++.....- ....+ -......+++.++|+..++++.- +.|...+.... ...
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~--~~~ 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK--TVS 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC--CEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC--EEe
Confidence 6789999988 555332211 11111 12347899999999999998888 87776665432 221
Q ss_pred EEEe-e--cCccceeEEEEEeCC--eEEEeeCCCcEEEeeCC
Q 044557 268 VVGA-L--RGHTKSILCMAVVSD--LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 268 ~~~~-~--~~h~~~v~~~~~~~~--~~~s~s~D~~i~~W~~~ 304 (362)
.... . ........-+++.++ .|+....++.+..+|..
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1111 1 011112456777743 55554448999888854
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.34 E-value=2.7 Score=37.46 Aligned_cols=196 Identities=14% Similarity=0.033 Sum_probs=106.4
Q ss_pred cCceeEEEEecCCCEEEEE-ECCCcEEEEECCCce---EEEeeeccCcccEEEEEEcC-CCcEE-EEeCCCeEEEEeCCC
Q 044557 142 VDAVSALALTKDETLLYSV-SWDRTIKIWRTSDFK---CLESITNAHDDAINAVALSD-DGDVY-TGSADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~v~~~~-~~~~~-s~~~dg~i~iw~~~~ 215 (362)
...+..++|++.+..|+-+ ...+.|+.+++.... ....+..........+++.+ .+.|+ +-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 3457889999866655544 456789888886521 11222222334577899987 55554 555678999998764
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEE
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVC 290 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~ 290 (362)
.. ...+.. ..-.....|++.|.+..|+.... .+.|...++.... ...++ .........+++++ . +++
T Consensus 191 ~~-~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~---~~~l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VK-RKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV---TENIQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CS-EEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEE---CSSCSCEEEEEEETTTTEEEE
T ss_pred Cc-eEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEE---ECCCCceEEEEEEeCCCEEEE
Confidence 32 222221 12234678999997776665542 3678888876422 22221 12223456777763 3 455
Q ss_pred EeeCCCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 291 SGSADKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 291 s~s~D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
+=+..+.|...+........+....+.-....++++. ++ .++++-...+.|..++
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~--------~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--ED--------KVFWTDIINEAIFSAN 317 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TT--------EEEEEESSSCSEEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CC--------EEEEecCCCCeEEEEE
Confidence 5566678888886433222222211222334455552 21 3444444445566555
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.23 E-value=2.6 Score=36.77 Aligned_cols=113 Identities=15% Similarity=0.327 Sum_probs=71.2
Q ss_pred eEEEE--ecC-CC-EEEEEECCCcEEEEECC-------CceEEEeeeccCcccEEEEEEcCC-CcEEEEeCCCeEEEEeC
Q 044557 146 SALAL--TKD-ET-LLYSVSWDRTIKIWRTS-------DFKCLESITNAHDDAINAVALSDD-GDVYTGSADKKIKVWRR 213 (362)
Q Consensus 146 ~~~~~--~~~-~~-~l~s~s~d~~i~iwd~~-------~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~~dg~i~iw~~ 213 (362)
..+++ +|. ++ ++++...++.+..|++. +.+.++++.. ...+..|...+. +.++.+-+|.-|..++.
T Consensus 131 yGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da 208 (355)
T 3amr_A 131 YGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYGRLYIAEEDEAIWKFSA 208 (355)
T ss_dssp CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred eEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence 34444 664 43 67788889999999882 3356677654 346778888764 56999999977777775
Q ss_pred CCCC-Ccceeehhhh-c-cccceeEEEE--ecCCC-EEEEEc-CCCcEEEEecc
Q 044557 214 SPGN-KKHSLVDVLE-R-HNSGINALAL--SCDGS-VLYSGA-CDRSIIVWEKE 260 (362)
Q Consensus 214 ~~~~-~~~~~~~~~~-~-h~~~v~~i~~--s~~~~-~l~s~~-~d~~i~~wd~~ 260 (362)
+... ....++.... + -...+..|++ .++++ +|++++ .+++..+||.+
T Consensus 209 ~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 209 EPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp STTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 5332 1112222221 1 1235777777 45655 566555 67789999986
No 290
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.21 E-value=2.3 Score=36.13 Aligned_cols=153 Identities=13% Similarity=0.168 Sum_probs=72.1
Q ss_pred CCCEEEEEEC----C-----CcEEEEECCCceEEEeeecc-CcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCC
Q 044557 153 DETLLYSVSW----D-----RTIKIWRTSDFKCLESITNA-HDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPG 216 (362)
Q Consensus 153 ~~~~l~s~s~----d-----~~i~iwd~~~~~~~~~~~~~-h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~ 216 (362)
++++++.|+. + ..+.+||..+.+....-... ..... +++.. +++ ++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVI-DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEE-TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEE-CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4555555554 2 46888898776532211101 01111 12222 455 4444432 46788887654
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s 291 (362)
.- .....+......-..+.+ +++.++.||.+ +.+..||..+. ....+..+........++.+.+.+++.
T Consensus 148 ~W--~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~ 221 (308)
T 1zgk_A 148 EW--HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVLHNCIYAA 221 (308)
T ss_dssp EE--EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred eE--eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEECCEEEEE
Confidence 21 111111111111122222 67777777765 45788887643 233322222211122233334446666
Q ss_pred eeCC-----CcEEEeeCCCCceeeeeE
Q 044557 292 GSAD-----KTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 292 ~s~D-----~~i~~W~~~~~~~~~~~~ 313 (362)
|+.+ ..+.+||.....+..+..
T Consensus 222 GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred eCCCCCCccceEEEEeCCCCcEEECCC
Confidence 6654 458888876666655543
No 291
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.20 E-value=2.3 Score=36.03 Aligned_cols=156 Identities=8% Similarity=0.073 Sum_probs=76.1
Q ss_pred CCCEEEEEECC------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcE-EEEeC---------CCeEEEEeCCCC
Q 044557 153 DETLLYSVSWD------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDV-YTGSA---------DKKIKVWRRSPG 216 (362)
Q Consensus 153 ~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~s~~~---------dg~i~iw~~~~~ 216 (362)
++++++.|+.+ ..+.+||..+.+....-.......-.+++.. ++++ +.|+. -..+.+||..+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 56667777655 4688999887653221111111111112222 4553 44432 345888888764
Q ss_pred CCcceeehhhhccccceeEEEEecCCCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEE
Q 044557 217 NKKHSLVDVLERHNSGINALALSCDGSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCS 291 (362)
Q Consensus 217 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s 291 (362)
. -+....+......-..+. -+++.++.||.+ ..+.+||..+. ....+..+........++.+.+.+++.
T Consensus 180 ~--W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~ 253 (306)
T 3ii7_A 180 T--WTELCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAVGSIVYVL 253 (306)
T ss_dssp E--EEEECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEEETTEEEEE
T ss_pred e--EEECCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCCccceeEEEECCEEEEE
Confidence 2 111111111111111222 267777777754 35788887653 233333332222222333344446677
Q ss_pred eeCC-----CcEEEeeCCCCceeeeeEec
Q 044557 292 GSAD-----KTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 292 ~s~D-----~~i~~W~~~~~~~~~~~~l~ 315 (362)
|+.+ ..+.+||.....+..+..+.
T Consensus 254 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNTETDKWVANSKVR 282 (306)
T ss_dssp ECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred eCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence 7644 45777887666666555443
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.17 E-value=4.7 Score=39.56 Aligned_cols=156 Identities=14% Similarity=0.037 Sum_probs=88.9
Q ss_pred cCceeEEEEecCCCE-EEEEECCCcEEEEECCCce---EEEeeeccCcccEEEEEEcCCC-cE-EEEeCCCeEEEEeCCC
Q 044557 142 VDAVSALALTKDETL-LYSVSWDRTIKIWRTSDFK---CLESITNAHDDAINAVALSDDG-DV-YTGSADKKIKVWRRSP 215 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~---~~~~~~~~h~~~v~~v~~~~~~-~~-~s~~~dg~i~iw~~~~ 215 (362)
...+..+++++.... +++-...+.|+.+++.... ....+..........|++.+.+ .| ++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 456778999885554 4454556788888886531 1122222223456678888765 44 4556778999999864
Q ss_pred CCCcceeehhhhccccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEE
Q 044557 216 GNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVC 290 (362)
Q Consensus 216 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~ 290 (362)
. ....++. ..-.....|++.|.+.+|+.... .+.|...++.... ...+ ..........|++++ . +++
T Consensus 503 ~-~~~~l~~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--~~~l--v~~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 V-KRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSL--VTENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp S-SEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEE--ECSSCSCEEEEEEETTTTEEEE
T ss_pred C-eEEEEEe---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--eEEE--EeCCCCCceEEEEecCCCeEEE
Confidence 3 2222221 12234678999998766665543 2678777775322 2222 122234556777762 3 445
Q ss_pred EeeCCCcEEEeeCCC
Q 044557 291 SGSADKTIRIWRGID 305 (362)
Q Consensus 291 s~s~D~~i~~W~~~~ 305 (362)
+=+..+.|...+...
T Consensus 575 aD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 575 VDSKLHSISSIDVNG 589 (791)
T ss_dssp EETTTTEEEEEETTS
T ss_pred EeCCCCcEEEEecCC
Confidence 545566787777543
No 293
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.10 E-value=2.8 Score=36.72 Aligned_cols=158 Identities=13% Similarity=0.156 Sum_probs=82.0
Q ss_pred EEEEEcCCCcEEEEe-------------CCCeEEEEeCCCCCCcceeehh----hhccccceeEEEEec--CCC-EEEEE
Q 044557 189 NAVALSDDGDVYTGS-------------ADKKIKVWRRSPGNKKHSLVDV----LERHNSGINALALSC--DGS-VLYSG 248 (362)
Q Consensus 189 ~~v~~~~~~~~~s~~-------------~dg~i~iw~~~~~~~~~~~~~~----~~~h~~~v~~i~~s~--~~~-~l~s~ 248 (362)
..+++.|+|.+++++ .+|.|.++|..+.......+.. +.........|.+.+ ++. +|+.+
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 455566777655544 6899999998743222111111 111122344566555 454 45544
Q ss_pred cC---CCcEEEEeccCCCCcEEEEEeecCcc-ceeEEEEEeCC--eEEEee---CC------------CcEEEeeCCCCc
Q 044557 249 AC---DRSIIVWEKEEDDGNILVVGALRGHT-KSILCMAVVSD--LVCSGS---AD------------KTIRIWRGIDRN 307 (362)
Q Consensus 249 ~~---d~~i~~wd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~--~~~s~s---~D------------~~i~~W~~~~~~ 307 (362)
.. +.+|.+|++.........+..+.+.. .....+.+.++ +.++.. .| ..=++|......
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~ 212 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 212 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe
Confidence 32 46788888876555555555555432 23456666433 555543 11 122334322221
Q ss_pred eeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 308 YTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 308 ~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
+..+...-..-+.++|+|+++ .+.++-+..+.|..|++.
T Consensus 213 ---~~~~~~~l~~pNGia~spDg~--------~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 213 ---VRVVAEGFDFANGINISPDGK--------YVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp ---CEEEEEEESSEEEEEECTTSS--------EEEEEEGGGTEEEEEEEC
T ss_pred ---EEEeecCCcccCcceECCCCC--------EEEEEeCCCCeEEEEEEC
Confidence 222222234568888887654 344555667888888875
No 294
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.88 E-value=0.36 Score=45.64 Aligned_cols=54 Identities=11% Similarity=0.200 Sum_probs=35.2
Q ss_pred CCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 205 DKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 205 dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
+|.|.-||+.+++..-+... ..++..-.....+..++.++.|+.++.||.++++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~-----~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKE-----HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEE-----SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecC-----CCCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 67889999988764332211 1122211222357788889999999999998754
No 295
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.77 E-value=2.7 Score=35.41 Aligned_cols=145 Identities=10% Similarity=0.109 Sum_probs=68.3
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCCCCc-ceeehhhhccccceeEE
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPGNKK-HSLVDVLERHNSGINAL 236 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~~~~-~~~~~~~~~h~~~v~~i 236 (362)
..+.+||..+.+....-.......-.+++.. ++. ++.|+.+ ..+.+||..+.... -.....+......-..+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 4688888877653221111111111122222 455 4556544 46888998765400 11111111111111222
Q ss_pred EEecCCCEEEEEcCCC-----cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC-----CcEEEeeCCCC
Q 044557 237 ALSCDGSVLYSGACDR-----SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD-----KTIRIWRGIDR 306 (362)
Q Consensus 237 ~~s~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D-----~~i~~W~~~~~ 306 (362)
. .+++.++.||.++ .+.+||..+. ....+..+......-.++.+.+.+++.|+.+ ..+.+||....
T Consensus 110 ~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 110 T--LGDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp E--ETTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred E--ECCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 2 2677777777543 5778887653 3333433332222222333344466666654 45777886655
Q ss_pred ceeeeeE
Q 044557 307 NYTCLAV 313 (362)
Q Consensus 307 ~~~~~~~ 313 (362)
.+..+..
T Consensus 186 ~W~~~~~ 192 (301)
T 2vpj_A 186 HWTNVTP 192 (301)
T ss_dssp EEEEECC
T ss_pred cEEeCCC
Confidence 5555443
No 296
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.64 E-value=2.2 Score=37.28 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=64.5
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceE--EEee---eccCcccEEEEEEcCC----CcEEEE---eCCCeEE
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC--LESI---TNAHDDAINAVALSDD----GDVYTG---SADKKIK 209 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~---~~~h~~~v~~v~~~~~----~~~~s~---~~dg~i~ 209 (362)
......|+|.||++++++--..|.|++++...++. +..+ ..........|+++|+ +.++.. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 45678999999999887765589999998665543 2211 1112445789999985 555432 3455666
Q ss_pred EEeCCCCC-------Ccceeehhhh-ccccceeEEEEecCCCEEEEEc
Q 044557 210 VWRRSPGN-------KKHSLVDVLE-RHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 210 iw~~~~~~-------~~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
-|....+. ....+...+. .....-..|+|.|||.+.++-+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 67665421 1111221111 1111345799999998777754
No 297
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=93.61 E-value=3.1 Score=35.59 Aligned_cols=176 Identities=9% Similarity=0.020 Sum_probs=96.4
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEE-EEeCCCeEEEEeCCCC---CCcceeehhhhccccceeEEE
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVY-TGSADKKIKVWRRSPG---NKKHSLVDVLERHNSGINALA 237 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~-s~~~dg~i~iw~~~~~---~~~~~~~~~~~~h~~~v~~i~ 237 (362)
...|+..|+...+....+. ....+..++|.+. +.++ +-..++.|..+++... .....+. ...-.....++
T Consensus 9 ~~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~---~~~~~~p~gla 83 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDGLA 83 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE---CSSCSCCCEEE
T ss_pred CCeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE---eCCCCCcCEEE
Confidence 4678888888765443332 2345778999875 4554 5556789999988651 1111121 11123457889
Q ss_pred EecCCCEE-EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeCC-CcEEEeeCCCCceeeee
Q 044557 238 LSCDGSVL-YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSAD-KTIRIWRGIDRNYTCLA 312 (362)
Q Consensus 238 ~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~D-~~i~~W~~~~~~~~~~~ 312 (362)
+.+.+..| ++-...+.|.+.++.... ...+. .........+++++ . ++.+.... +.|...+........+
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~--~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~- 158 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLF--RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL- 158 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSS--EEEEE--ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCc--eEEEE--ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE-
Confidence 98755555 455677889999876422 22221 12234557777764 3 34444333 5676666433222111
Q ss_pred EecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 313 VLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 313 ~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
....-.....++++++++ .+.++-+..+.|...++.
T Consensus 159 -~~~~~~~P~gla~d~~~~--------~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 159 -VTENIQWPNGITLDLLSG--------RLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp -ECSSCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETT
T ss_pred -EECCCCCceEEEEeccCC--------EEEEEECCCCeEEEEecC
Confidence 122334677888876543 334444455667777764
No 298
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.59 E-value=2.9 Score=35.23 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=69.1
Q ss_pred CEEEEEECC----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCCCCcceeeh
Q 044557 155 TLLYSVSWD----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPGNKKHSLVD 224 (362)
Q Consensus 155 ~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~~~~~~~~~ 224 (362)
.+++.|+.+ ..+.+||..+.+....-.......-.+++.. ++. ++.|+.+ ..+.+||..+.. -....
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~ 93 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVA 93 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTE--EEEEC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCc--eeeCC
Confidence 344445433 3577888877653221110100001122222 455 4555544 357888876542 11111
Q ss_pred hhhccccceeEEEEecCCCEEEEEcCCC-----cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC----
Q 044557 225 VLERHNSGINALALSCDGSVLYSGACDR-----SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD---- 295 (362)
Q Consensus 225 ~~~~h~~~v~~i~~s~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D---- 295 (362)
.+......-..+. -+++.++.||.++ .+.+||..+. ....+..+........+..+.+.+++.|+.+
T Consensus 94 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCEETTTT
T ss_pred CCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCCCCcccCceEEEECCEEEEEeCCCCCCC
Confidence 1111111112222 2677777787664 4667777643 3333333332222222233344455655542
Q ss_pred ---CcEEEeeCCCCceeeeeE
Q 044557 296 ---KTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 296 ---~~i~~W~~~~~~~~~~~~ 313 (362)
..+.+||.....+..+..
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~ 190 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAE 190 (302)
T ss_dssp EECCCEEEEETTTTEEEEECC
T ss_pred ccccEEEEEeCCCCcEEECCC
Confidence 347778866555555443
No 299
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.51 E-value=0.8 Score=37.09 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=59.6
Q ss_pred cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccc--------eeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 187 AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSG--------INALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~--------v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
.+..++|+|+|.|++. .+|++.-.+..+... ...... ... ..++.|.|+|.+.++ .||.|+-++
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~-~~W~~s----~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDN-DNWMGR----AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTT-CCHHHH----CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCc-cccccc----ccEecccccccceEEEECCCCCEEEe--CCCEEEEeC
Confidence 5679999999998887 778765555433211 111111 112 378899999988888 669888776
Q ss_pred ccCCCCcE-----EEEEeecCccceeEEEEEeCC-eEEEeeCCCcEE
Q 044557 259 KEEDDGNI-----LVVGALRGHTKSILCMAVVSD-LVCSGSADKTIR 299 (362)
Q Consensus 259 ~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i~ 299 (362)
-.+..... ..++. .+ =+.+..+.+.++ .|.... |+.+.
T Consensus 114 pP~~~~~~Wl~~a~~vg~-~g-w~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGS-GG-WSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp CCCSTTCCHHHHSEEEEC-SS-GGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred CCcCCCCceeccccEecc-CC-CCceEEEEECCCceEEEEe-CCcEE
Confidence 53322111 11110 01 134677888776 455555 77754
No 300
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=93.27 E-value=4.1 Score=36.01 Aligned_cols=192 Identities=12% Similarity=0.027 Sum_probs=106.5
Q ss_pred CceeEEEEecCCCEEE-EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcE-EEEeCCCeEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLY-SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDV-YTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~-~s~~~dg~i~iw~~~~~~~~ 219 (362)
..+..++|++.+..|+ +-...+.|..+++........+. ........+++.+. +.+ ++-...+.|.+.+++... .
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~ 193 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-R 193 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-C
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-e
Confidence 3567889997655444 44567889999987654333222 22234467888864 554 455567789888876432 2
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcC-C-CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeC
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGAC-D-RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSA 294 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d-~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~ 294 (362)
..+. ...-.....|++.|.+..|+.+.. . +.|..+++.... ...+. .........+++++ . ++++-+.
T Consensus 194 ~~l~---~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~---~~~~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 194 KVLL---WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIA---DTHLFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EEEE---CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEE---CSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred EEee---cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEE---ECCCCCeeeEEEeCCCCEEEEEECC
Confidence 2221 112234678999997776665543 3 578777775422 21111 11223346677763 3 5566666
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEe
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQ 355 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~ 355 (362)
.+.|..++....... ..+........++++. + +.+.++-...+.|...+
T Consensus 267 ~~~I~~~d~dG~~~~--~~~~~~~~~P~giav~-~---------~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 267 HHVIERANLDGSHRK--AVISQGLPHPFAITVF-E---------DSLYWTDWHTKSINSAN 315 (386)
T ss_dssp TTEEEEECTTSCSCE--EEECSSCSSEEEEEEE-T---------TEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCCeeE--EEEECCCCCceEEEEE-C---------CEEEEeeCCCCeEEEEE
Confidence 778888875432211 1222223345666662 1 13444544555666655
No 301
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.20 E-value=3 Score=36.19 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=19.6
Q ss_pred cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC
Q 044557 253 SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD 295 (362)
Q Consensus 253 ~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D 295 (362)
.+.+||..+.. ...+..+......-.++.+.+.+++.|+.+
T Consensus 286 ~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 286 STDIHLWHNGK--WDKSGELSQGRAYGVSLPWNNSLLIIGGET 326 (357)
T ss_dssp CCEEEECC-----CEEEEECSSCCBSSEEEEETTEEEEEEEEC
T ss_pred eEEEEecCCCc--eeeCCCCCCCcccceeEEeCCEEEEEeeeC
Confidence 46788887533 334444443222223344445566666654
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.17 E-value=1.4 Score=38.63 Aligned_cols=105 Identities=13% Similarity=0.107 Sum_probs=60.6
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCce-EEEeee--ccCcccEEEEEEcCC----CcEEEEeC----C----Ce
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFK-CLESIT--NAHDDAINAVALSDD----GDVYTGSA----D----KK 207 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~--~~h~~~v~~v~~~~~----~~~~s~~~----d----g~ 207 (362)
.....++|.|++++++ +..++.|++++. +++ .+..+. .........|+++|+ +.++.+.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4568899999998555 456699999973 444 222111 111245789999997 66554432 3 56
Q ss_pred EEEEeCCCCCC----cceeehhhh-ccccceeEEEEecCCCEEEEEc
Q 044557 208 IKVWRRSPGNK----KHSLVDVLE-RHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 208 i~iw~~~~~~~----~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
|..|+...... ...+...+. ........|+|.|||.++++-+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 77777654310 111111111 1111246799999998776644
No 303
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=93.00 E-value=4.5 Score=35.73 Aligned_cols=149 Identities=16% Similarity=0.100 Sum_probs=86.6
Q ss_pred eeEEEEecCCCE-EEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC-cEE-EEeCC-CeEEEEeCCCCCCcc
Q 044557 145 VSALALTKDETL-LYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG-DVY-TGSAD-KKIKVWRRSPGNKKH 220 (362)
Q Consensus 145 v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~-s~~~d-g~i~iw~~~~~~~~~ 220 (362)
...+++.+.+.. .++-...+.|.+.++...... .+..........+++.|.+ .++ +-... +.|..++++.. ...
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~ 238 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRR 238 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCE
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcE
Confidence 356778875544 445555678888887654322 2222233457889999754 444 44444 78888887543 222
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i 298 (362)
.+.. ..-...+.|+++|++..|+.+ +..+.|..+++.... ...++ .........+++..+ ++++-...+.|
T Consensus 239 ~~~~---~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~---~~~~~~P~giav~~~~ly~td~~~~~V 311 (386)
T 3v65_B 239 IIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVI---SQGLPHPFAITVFEDSLYWTDWHTKSI 311 (386)
T ss_dssp EEEC---SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS-CEEEE---CSSCSSEEEEEEETTEEEEEETTTTEE
T ss_pred EEEE---CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe-eEEEE---ECCCCCceEEEEECCEEEEeeCCCCeE
Confidence 2221 112345789999877766655 456779889876422 22222 112233455666555 56666677778
Q ss_pred EEee
Q 044557 299 RIWR 302 (362)
Q Consensus 299 ~~W~ 302 (362)
..++
T Consensus 312 ~~~~ 315 (386)
T 3v65_B 312 NSAN 315 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7776
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.99 E-value=1.8 Score=37.76 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=60.3
Q ss_pred CceeEEEEecCCCEEEEEECCCcEEEEECCCceE--EEeee--ccCcccEEEEEEcCC----CcEEEEeC-C-----CeE
Q 044557 143 DAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC--LESIT--NAHDDAINAVALSDD----GDVYTGSA-D-----KKI 208 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~--~~h~~~v~~v~~~~~----~~~~s~~~-d-----g~i 208 (362)
.....++|.|+++++++ ..++.|++++ +++. +..+. .........++++|+ +.++.+.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45678999999996554 5679999998 3332 22111 111345789999998 55554332 2 677
Q ss_pred EEEeCCCCCC--cceeehhhh---ccccceeEEEEecCCCEEEEEc
Q 044557 209 KVWRRSPGNK--KHSLVDVLE---RHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 209 ~iw~~~~~~~--~~~~~~~~~---~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
..|+...... ...+...+. ........++|.|||..+++-+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 7787764311 111221111 1111236799999997666643
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=92.98 E-value=0.53 Score=45.56 Aligned_cols=152 Identities=16% Similarity=0.079 Sum_probs=83.6
Q ss_pred eeEEEEecCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEEEEe-C-CCeEEEEeCCCCCCcc
Q 044557 145 VSALALTKDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVYTGS-A-DKKIKVWRRSPGNKKH 220 (362)
Q Consensus 145 v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~-~-dg~i~iw~~~~~~~~~ 220 (362)
...+++.+.+ +++++-...+.|.+.++...... .+..........+++.|. +.|+.+. . .+.|.++++... ...
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~ 532 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIY 532 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCC
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-Cee
Confidence 3456777544 44444456688999988754432 222222234567888875 4554433 2 267877776532 222
Q ss_pred eeehhhhccccceeEEEEecCCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCcE
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKTI 298 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~i 298 (362)
.+.. ..-...+.|+|+|++..|+ +-+..+.|..+++.... . ..+....+.......+++..+ ++++....+.|
T Consensus 533 ~l~~---~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~-~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V 607 (699)
T 1n7d_A 533 SLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-R-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 607 (699)
T ss_dssp EESC---SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-C-EEECCCSSSCSSCCCCEEETTEEEEECSTTTCE
T ss_pred EEEe---CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-e-EEEEecCCcCCCceEeEEECCEEEEEeCCCCeE
Confidence 2211 1122356799999766555 44566789999886422 2 222221111222344555555 56677777888
Q ss_pred EEeeC
Q 044557 299 RIWRG 303 (362)
Q Consensus 299 ~~W~~ 303 (362)
..++.
T Consensus 608 ~~~d~ 612 (699)
T 1n7d_A 608 FSANR 612 (699)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 88873
No 306
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=92.63 E-value=4.5 Score=34.71 Aligned_cols=193 Identities=12% Similarity=0.037 Sum_probs=105.1
Q ss_pred ceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCcE-EEEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGDV-YTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~-~s~~~dg~i~iw~~~~~~~~~ 220 (362)
....++|++.+. ++.+-...+.|..++.........+....-.....+++.+ ++.+ ++-...+.|.+++++... ..
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EE
Confidence 356788888554 4445456788999988765321111111123456788886 4554 455567899999986432 22
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeCC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSAD 295 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~D 295 (362)
.+.. ........+++.|.+..|+.+.. .+.|...++.... ...++ .........+++++ . ++.+=+..
T Consensus 115 ~l~~---~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~---~~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 115 VLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIII---NSEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EEEC---SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEE---CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEe---CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEE---ECCCCCccEEEEeccCCEEEEEECCC
Confidence 2221 22234578999997766665553 4678777765322 21121 11123346677764 3 55666667
Q ss_pred CcEEEeeCCCCceeeeeEecCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEec
Q 044557 296 KTIRIWRGIDRNYTCLAVLEGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQI 356 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~ 356 (362)
+.|..++........+ +.+......++++. .+ .++++-...+.|...+.
T Consensus 188 ~~I~~~d~dG~~~~~~--~~~~~~~P~glav~--~~--------~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAV--VKGSLPHPFALTLF--ED--------ILYWTDWSTHSILACNK 236 (318)
T ss_dssp TEEEEEETTSCSCEEE--ECSCCSCEEEEEEE--TT--------EEEEEETTTTEEEEEET
T ss_pred CEEEEEcCCCCceEEE--ecCCCCCceEEEEe--CC--------EEEEEecCCCeEEEEEC
Confidence 8888887543222222 22233445566653 11 23444444455655554
No 307
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.55 E-value=4.3 Score=34.36 Aligned_cols=152 Identities=10% Similarity=0.127 Sum_probs=70.2
Q ss_pred CCCEEEEEECC-----CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-----CeEEEEeCCCCCCcce
Q 044557 153 DETLLYSVSWD-----RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-----KKIKVWRRSPGNKKHS 221 (362)
Q Consensus 153 ~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-----g~i~iw~~~~~~~~~~ 221 (362)
++++++.|+.+ ..+.+||..+.+....-.......-.+++.. +++ ++.|+.+ ..+.+||+.+.. -.
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~ 197 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE--WR 197 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE--EE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCe--Ee
Confidence 45666666543 4688889877653221111111111122222 455 4455543 458888876542 11
Q ss_pred eehhhhccccceeEEEEecCCCEEEEEcCC-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCC-
Q 044557 222 LVDVLERHNSGINALALSCDGSVLYSGACD-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSAD- 295 (362)
Q Consensus 222 ~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D- 295 (362)
....+......-..+.+ +++.++.||.+ ..+.+||..+. ....+..+........++...+.+++.|+.+
T Consensus 198 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 198 MITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred eCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 11111111111222222 67777777765 45888988653 2333322222111122233334466666644
Q ss_pred ----CcEEEeeCCCCceeee
Q 044557 296 ----KTIRIWRGIDRNYTCL 311 (362)
Q Consensus 296 ----~~i~~W~~~~~~~~~~ 311 (362)
..+.+||.....+..+
T Consensus 274 ~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 274 HTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp SCBCCEEEEEETTTTEEEEE
T ss_pred CcccceEEEEcCCCCEEeec
Confidence 3355666544444433
No 308
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.19 E-value=1.3 Score=38.72 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=58.5
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeee------ccCcccEEEEEEcCC----CcEEEEe-C-----
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESIT------NAHDDAINAVALSDD----GDVYTGS-A----- 204 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~------~~h~~~v~~v~~~~~----~~~~s~~-~----- 204 (362)
......|+|.|+++ +++ +...+.|++++.. ++....+. .........++++|+ +.++.+. .
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 34568999999999 554 5568999999854 32211111 112335688999995 6654432 2
Q ss_pred --CCeEEEEeCCCCCC----cceeehhhh---ccccceeEEEEecCCCEEEEEc
Q 044557 205 --DKKIKVWRRSPGNK----KHSLVDVLE---RHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 205 --dg~i~iw~~~~~~~----~~~~~~~~~---~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
...|..|+...... ...+...+. ........|+|.|||.++++-+
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 23566666653321 111111111 0011235699999996655543
No 309
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.11 E-value=2.4 Score=38.61 Aligned_cols=108 Identities=11% Similarity=0.137 Sum_probs=61.0
Q ss_pred cCceeEEEEecCCCEEEEEECCCcEEEEECCCceE--EEeeecc-----CcccEEEEEEcC----CCcEEEEeC------
Q 044557 142 VDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKC--LESITNA-----HDDAINAVALSD----DGDVYTGSA------ 204 (362)
Q Consensus 142 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~~-----h~~~v~~v~~~~----~~~~~s~~~------ 204 (362)
......|+|.|+|+++++-...+.|++++..+++. +..+... .......|+|+| ++.|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34567999999999777654435788887654432 2222111 234577999999 455543321
Q ss_pred -------CCeEEEEeCCCCCC----cceeehhhh-ccccceeEEEEecCCCEEEEEc
Q 044557 205 -------DKKIKVWRRSPGNK----KHSLVDVLE-RHNSGINALALSCDGSVLYSGA 249 (362)
Q Consensus 205 -------dg~i~iw~~~~~~~----~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~~ 249 (362)
...|.-|+...... ...+...+. ........|+|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23455565543211 111221111 1112367899999998777655
No 310
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=91.42 E-value=6.6 Score=34.09 Aligned_cols=150 Identities=17% Similarity=0.132 Sum_probs=87.6
Q ss_pred ceeEEEEecCCC-EEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEE-EEeCC-CeEEEEeCCCCCCc
Q 044557 144 AVSALALTKDET-LLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVY-TGSAD-KKIKVWRRSPGNKK 219 (362)
Q Consensus 144 ~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~-s~~~d-g~i~iw~~~~~~~~ 219 (362)
....+++.+.+. +.++-...+.|.+.++...... .+..........+++.|. +.++ +-... +.|..++++.. ..
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~ 194 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GR 194 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SC
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-Cc
Confidence 346788887554 4455556788999998754322 222223345789999984 5544 44444 78888887643 22
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCc
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~ 297 (362)
..+.. ..-...+.|+++|++..|+.+ ...+.|..+++.... ...++ .........+++..+ ++++-...+.
T Consensus 195 ~~~~~---~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~---~~~~~~P~giav~~~~ly~td~~~~~ 267 (349)
T 3v64_C 195 RIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVI---SQGLPHPFAITVFEDSLYWTDWHTKS 267 (349)
T ss_dssp EESCC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE---CSSCSSEEEEEEETTEEEEEETTTTE
T ss_pred EEEEE---CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEE---eCCCCCceEEEEECCEEEEecCCCCe
Confidence 22211 112345789999877766655 456779899876422 22222 112233455665555 5566666777
Q ss_pred EEEee
Q 044557 298 IRIWR 302 (362)
Q Consensus 298 i~~W~ 302 (362)
|...+
T Consensus 268 V~~~~ 272 (349)
T 3v64_C 268 INSAN 272 (349)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77775
No 311
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=91.24 E-value=6.2 Score=33.44 Aligned_cols=155 Identities=10% Similarity=0.090 Sum_probs=71.7
Q ss_pred cCCCEEEEEEC----C-------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC--------CeEEEE
Q 044557 152 KDETLLYSVSW----D-------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD--------KKIKVW 211 (362)
Q Consensus 152 ~~~~~l~s~s~----d-------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d--------g~i~iw 211 (362)
.++++++.|+. + ..+.+||..+.+....-.......-.+++.. +++ ++.|+.+ ..+.+|
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEE
Confidence 46677777773 1 1277888877653221110100000112222 455 4455522 458888
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcC-C-----CcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGAC-D-----RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~-d-----~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
|..+.. -+....+......-. + ...+++.++.||. + +.+.+||..+. ....+..+........+..+.
T Consensus 123 d~~~~~--W~~~~~~p~~r~~~~-~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~ 196 (315)
T 4asc_A 123 DRLSFK--WGESDPLPYVVYGHT-V-LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVHD 196 (315)
T ss_dssp ETTTTE--EEECCCCSSCCBSCE-E-EEETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEET
T ss_pred CCCCCc--EeECCCCCCccccee-E-EEECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEEC
Confidence 886542 111111111111111 1 2246677777776 2 45788887653 233332222211112233334
Q ss_pred CCeEEEeeCCC-----cEEEeeCCCCceeeeeE
Q 044557 286 SDLVCSGSADK-----TIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 286 ~~~~~s~s~D~-----~i~~W~~~~~~~~~~~~ 313 (362)
+.+++.|+.++ .+.+||.....+..+..
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA 229 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence 44666666544 46777765555555543
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=90.89 E-value=7.7 Score=33.89 Aligned_cols=153 Identities=8% Similarity=0.054 Sum_probs=85.7
Q ss_pred eeEEEEecCCCEEEEEE------------CCCcEEEEECCCc--eEEE-eeecc----CcccEEEEEEcC--CC--cEEE
Q 044557 145 VSALALTKDETLLYSVS------------WDRTIKIWRTSDF--KCLE-SITNA----HDDAINAVALSD--DG--DVYT 201 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s------------~d~~i~iwd~~~~--~~~~-~~~~~----h~~~v~~v~~~~--~~--~~~s 201 (362)
...+...|+|..+++++ .+|.|.++|..+. +..+ .+... ..-....+.+.+ ++ +++.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34566777776555542 6899999998742 2211 11111 122456676644 45 3554
Q ss_pred Ee---CCCeEEEEeCCCCCCcceeehhhhcc-ccceeEEEEecCCCEEEEEcC-----------------CCcEEEEecc
Q 044557 202 GS---ADKKIKVWRRSPGNKKHSLVDVLERH-NSGINALALSCDGSVLYSGAC-----------------DRSIIVWEKE 260 (362)
Q Consensus 202 ~~---~dg~i~iw~~~~~~~~~~~~~~~~~h-~~~v~~i~~s~~~~~l~s~~~-----------------d~~i~~wd~~ 260 (362)
+. .+.+|.+|+++.......+.....+. -...+.+.+.++|.+.++... .|.|..++.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 42 25688898877654433444333322 245789999999998877641 244544543
Q ss_pred CCCCcEEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeCC
Q 044557 261 EDDGNILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRGI 304 (362)
Q Consensus 261 ~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~~ 304 (362)
.+. ..+.. .......++++++ ++++-+..+.|..|+..
T Consensus 211 -~~~-~~~~~----~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 211 -NDV-RVVAE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp -TCC-EEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred -CeE-EEeec----CCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 211 11111 1223467788765 55666677889888864
No 313
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=90.67 E-value=10 Score=34.85 Aligned_cols=155 Identities=8% Similarity=0.074 Sum_probs=88.3
Q ss_pred ceeEEEEecC-CCEEEEE-ECCCcEEEEECCCceEEEeeecc--CcccEEEEEE-------cCCCc-EEEEeCCC-----
Q 044557 144 AVSALALTKD-ETLLYSV-SWDRTIKIWRTSDFKCLESITNA--HDDAINAVAL-------SDDGD-VYTGSADK----- 206 (362)
Q Consensus 144 ~v~~~~~~~~-~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~--h~~~v~~v~~-------~~~~~-~~s~~~dg----- 206 (362)
....|+|+|. ...|+.+ ...+.|++.|.+++......... .......++| ++++. ++.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4578899983 4444444 44478999998887654333211 1234789999 99987 66665543
Q ss_pred --eEEEEeCCC-CCCcc----eeehhhhccccceeEEEEecCCC-EEEEEcCCCcEEEEecc-------CCCC------c
Q 044557 207 --KIKVWRRSP-GNKKH----SLVDVLERHNSGINALALSCDGS-VLYSGACDRSIIVWEKE-------EDDG------N 265 (362)
Q Consensus 207 --~i~iw~~~~-~~~~~----~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~~d~~i~~wd~~-------~~~~------~ 265 (362)
.|.+++... +.... .... .. .....++++|++. ++++-..++.|..+|+. .... .
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~---~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA---AY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE---EE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccceeec---cC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 356665443 12110 1111 11 1335678899554 45566677889999987 3321 0
Q ss_pred ----EEEEEeecCccceeEEEEEeCC---eEEEeeCCCcEEEeeC
Q 044557 266 ----ILVVGALRGHTKSILCMAVVSD---LVCSGSADKTIRIWRG 303 (362)
Q Consensus 266 ----~~~~~~~~~h~~~v~~~~~~~~---~~~s~s~D~~i~~W~~ 303 (362)
...+.... .......++++++ ++++=+..+.|+.++.
T Consensus 296 ~~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 296 NPNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CTTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 11111221 2233467777653 4666677788888653
No 314
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=90.50 E-value=7.4 Score=33.02 Aligned_cols=157 Identities=8% Similarity=0.099 Sum_probs=71.0
Q ss_pred ecCCCEEEEEEC----CC-------cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCC-------CeEEEE
Q 044557 151 TKDETLLYSVSW----DR-------TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSAD-------KKIKVW 211 (362)
Q Consensus 151 ~~~~~~l~s~s~----d~-------~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~d-------g~i~iw 211 (362)
..++.+++.|+. ++ .+.+||..+.+....-.......-.+++.. +++ ++.|+.+ ..+.+|
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEE
Confidence 345667777763 12 177788876653321110110011122222 455 4555543 357778
Q ss_pred eCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCC------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 212 RRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACD------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 212 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
|..+.. -+....+......- +++ ..+++.++.||.+ +.+.+||..+. ....+..+........++...
T Consensus 133 d~~~~~--W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~ 206 (318)
T 2woz_A 133 DPVAAK--WSEVKNLPIKVYGH-NVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIHK 206 (318)
T ss_dssp ETTTTE--EEEECCCSSCEESC-EEE-EETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEET
T ss_pred eCCCCC--EeECCCCCCccccc-EEE-EECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEEC
Confidence 876542 11111111111111 122 2467777777642 35888888753 233333332211112233334
Q ss_pred CCeEEEeeCC-----CcEEEeeCCCCceeeeeEe
Q 044557 286 SDLVCSGSAD-----KTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 286 ~~~~~s~s~D-----~~i~~W~~~~~~~~~~~~l 314 (362)
+.+++.|+.+ ..+.+||.....+..+..+
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 240 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF 240 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCC
T ss_pred CEEEEEcCcCCCCccceEEEEECCCCeEEECCCC
Confidence 4455666543 2466777665556555433
No 315
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=90.44 E-value=8.1 Score=33.37 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=15.2
Q ss_pred CCCEEEEEEC-C---------CcEEEEECCCceE
Q 044557 153 DETLLYSVSW-D---------RTIKIWRTSDFKC 176 (362)
Q Consensus 153 ~~~~l~s~s~-d---------~~i~iwd~~~~~~ 176 (362)
++++++.|+. + ..+.+||..+.+-
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 4555555554 2 4688899887653
No 316
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=90.22 E-value=7 Score=32.33 Aligned_cols=208 Identities=10% Similarity=0.114 Sum_probs=108.8
Q ss_pred ecccCccceeeeEec--Cc-EEEEecCCCeEEEeecCCCCcccceeeeccceeEEeecceeEEEEEcCc-eeEEEe-cCC
Q 044557 14 TLKGHNSYVSSLALA--GK-FLYTGSSDNEVRSWDCNTFSSELDQEFLSNNNIVAVGKGAVKSLVVLAD-KLFSAH-QDH 88 (362)
Q Consensus 14 tl~gH~~~V~~l~~~--~~-~l~t~s~Dg~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~l~s~~-~dg 88 (362)
-|.|-.+.+..|+++ ++ +++....++.|...|.. .. ...... ..+......|.+.++ .++.++ .++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~--v~~~i~------l~g~~D~EGIa~~~~g~~~vs~E~~~ 91 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD--LIRTIP------LDFVKDLETIEYIGDNQFVISDERDY 91 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC--EEEEEE------CSSCSSEEEEEECSTTEEEEEETTTT
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC--EEEEEe------cCCCCChHHeEEeCCCEEEEEECCCC
Confidence 456666789999995 33 55556678888888865 11 111110 011234445555444 343333 456
Q ss_pred cEEEEecCCCCCCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEE
Q 044557 89 KIRVWKINNQEPDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKI 168 (362)
Q Consensus 89 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i 168 (362)
.+.++++...... . ......++.. ..........++++|.++.|+++.+.....|
T Consensus 92 ~l~~~~v~~~~~i-~-~~~~~~~~~~-----------------------~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i 146 (255)
T 3qqz_A 92 AIYVISLTPNSEV-K-ILKKIKIPLQ-----------------------ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEV 146 (255)
T ss_dssp EEEEEEECTTCCE-E-EEEEEECCCS-----------------------SCCCSSCCEEEEEETTTTEEEEEEESSSEEE
T ss_pred cEEEEEcCCCCee-e-eeeeeccccc-----------------------cccccCCcceEEEeCCCCEEEEEECcCCceE
Confidence 7777776543210 0 0000000000 0012334678999999987777776655566
Q ss_pred EECCC---ceEEEeee------ccCcccEEEEEEcCCC-c-EEEEeCCCeEEEEeCCCCCCcceeehhhhcc------cc
Q 044557 169 WRTSD---FKCLESIT------NAHDDAINAVALSDDG-D-VYTGSADKKIKVWRRSPGNKKHSLVDVLERH------NS 231 (362)
Q Consensus 169 wd~~~---~~~~~~~~------~~h~~~v~~v~~~~~~-~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h------~~ 231 (362)
|.+.. ...+..+. ..+...+.++++.|.. + ++.....+.+.++|... ... .......+. -.
T Consensus 147 ~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~-~~~~L~~g~~~l~~~~~ 224 (255)
T 3qqz_A 147 YKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVI-GEMSLTKGSRGLSHNIK 224 (255)
T ss_dssp EEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEE-EEEECSTTGGGCSSCCC
T ss_pred EEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEE-EEEEcCCccCCcccccC
Confidence 65531 11111111 1123346788998764 4 44556677888888653 322 222111111 12
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEe
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWE 258 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd 258 (362)
.--.|+|.++|. |+..+..+.++.+.
T Consensus 225 qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 225 QAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp SEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred CCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 345799999997 55557767555554
No 317
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=90.12 E-value=8.8 Score=33.30 Aligned_cols=173 Identities=12% Similarity=0.035 Sum_probs=97.6
Q ss_pred CceeEEEEecCCCEEE-EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CCcE-EEEeCCCeEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLY-SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DGDV-YTGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~-~s~~~dg~i~iw~~~~~~~~ 219 (362)
..+..++|++....|+ +-...+.|..+++........+. ........+++.+ ++.+ ++-...+.|.+.+++... .
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~ 150 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-R 150 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-e
Confidence 3467889997665555 44467889999987654322222 2223456788886 4554 455667899999886432 2
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEc-CC-CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeC
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGA-CD-RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSA 294 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d-~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~ 294 (362)
..+.. ..-.....+++.|.+..|+... .. +.|..+++.... . ..+ ..........+++++ . ++++-+.
T Consensus 151 ~~l~~---~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~-~~~--~~~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 151 KVLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-R-RII--ADTHLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp EEEEC---TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-C-EES--CCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEe---CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-c-EEE--EECCCCCcceEEEeCCCCEEEEEECC
Confidence 22221 1223467899999766655444 34 678888775422 1 111 111223456777763 3 5566666
Q ss_pred CCcEEEeeCCCCceeeeeEecCCCCcEEEEEe
Q 044557 295 DKTIRIWRGIDRNYTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 295 D~~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~ 326 (362)
.+.|..++........ .+........++++
T Consensus 224 ~~~I~~~~~dG~~~~~--~~~~~~~~P~giav 253 (349)
T 3v64_C 224 HHVIERANLDGSHRKA--VISQGLPHPFAITV 253 (349)
T ss_dssp TTEEEEEETTSCSCEE--EECSSCSSEEEEEE
T ss_pred CCEEEEEeCCCCceEE--EEeCCCCCceEEEE
Confidence 7788888754322111 12222334566666
No 318
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=89.63 E-value=16 Score=35.72 Aligned_cols=153 Identities=18% Similarity=0.096 Sum_probs=90.1
Q ss_pred CceeEEEEecCCCEEE-EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEEEEe-C-CCeEEEEeCCCCCC
Q 044557 143 DAVSALALTKDETLLY-SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVYTGS-A-DKKIKVWRRSPGNK 218 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~-~-dg~i~iw~~~~~~~ 218 (362)
.....|++.+.++.|+ +-...+.|.+.++..... ..+..........|++.|. +.|+-.. . .+.|...+++. ..
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~ 548 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VD 548 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CC
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-Cc
Confidence 3456788888775444 445678999999875443 2232233345789999986 5555443 3 37888888753 32
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEc-CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCC
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGA-CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADK 296 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~ 296 (362)
...++. ..-...+.|++.+.+..|+.+. ..+.|...++.... ...++ .-.+.......|++..+ ++++-...+
T Consensus 549 ~~~lv~---~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~-~~~v~-~~~~~l~~P~glav~~~~lYwtD~~~~ 623 (791)
T 3m0c_C 549 IYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTIL-EDEKRLAHPFSLAVFEDKVFWTDIINE 623 (791)
T ss_dssp EEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE-ECTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred eEEEEe---CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc-eEEEe-cCCCccCCCCEEEEeCCEEEEEECCCC
Confidence 222221 1223567899998777776664 45678888876432 22222 11122223456666665 455555666
Q ss_pred cEEEee
Q 044557 297 TIRIWR 302 (362)
Q Consensus 297 ~i~~W~ 302 (362)
.|...+
T Consensus 624 ~I~~~d 629 (791)
T 3m0c_C 624 AIFSAN 629 (791)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 676655
No 319
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=89.34 E-value=10 Score=32.84 Aligned_cols=126 Identities=12% Similarity=0.168 Sum_probs=82.1
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+.-.+|..+.+|--. ..++.|+|+++.+.+..... ...|..-.|-.+..++-.+ +..|.-|+++......+. +
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~--~e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kv---F 143 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKM---F 143 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC--SSCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEE---E
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec--CCccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCcee---e
Confidence 344588888877766 68999999999988887753 4577777777666544332 558999998753322222 2
Q ss_pred hcc----ccceeEEEEecCCCEEEEEcC-------CCcEEEEeccCCCCcEEEEEeecCccceeEEEEE
Q 044557 227 ERH----NSGINALALSCDGSVLYSGAC-------DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV 284 (362)
Q Consensus 227 ~~h----~~~v~~i~~s~~~~~l~s~~~-------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~ 284 (362)
.+| ...|.....+++.++++..|- .|.+.+|+.+.. ....++||......+.+
T Consensus 144 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~ 207 (365)
T 2xzh_A 144 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKM 207 (365)
T ss_dssp ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----EEEEECCSEEEEEEECC
T ss_pred ecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-----ccceeeeeeeeeEEEec
Confidence 222 356777788888887764442 256778887642 23346778766544444
No 320
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=87.79 E-value=12 Score=31.73 Aligned_cols=136 Identities=13% Similarity=0.178 Sum_probs=61.2
Q ss_pred CCCEEEEEECC-------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcE-EEEeC------CCeEEEEeCCCCCC
Q 044557 153 DETLLYSVSWD-------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDV-YTGSA------DKKIKVWRRSPGNK 218 (362)
Q Consensus 153 ~~~~l~s~s~d-------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~s~~~------dg~i~iw~~~~~~~ 218 (362)
++++++.|+.+ ..+.+||..+.+-...-.......-.+++. .++++ +.|+. -..+.+||..+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~- 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD- 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence 56666667654 357788887755322111010000011222 35553 44443 2358889887642
Q ss_pred cceeehhhhccccceeEEEEecCCCEEEEEcCCC-----cEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEee
Q 044557 219 KHSLVDVLERHNSGINALALSCDGSVLYSGACDR-----SIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGS 293 (362)
Q Consensus 219 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s 293 (362)
-.....+......-.++. -+++.++.||.++ .+.+||..+. ....+..+........++.+.+.+++.|+
T Consensus 187 -W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 187 -WKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTN--KWEVMTEFPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp -EEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTC--CEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred -EEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCC--eEEECCCCCCcccceEEEEECCEEEEECC
Confidence 111111111111112222 3677777777543 4667887653 23333333322222223333444666666
Q ss_pred CC
Q 044557 294 AD 295 (362)
Q Consensus 294 ~D 295 (362)
.+
T Consensus 262 ~~ 263 (318)
T 2woz_A 262 FA 263 (318)
T ss_dssp BC
T ss_pred ee
Confidence 54
No 321
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=87.27 E-value=6.7 Score=34.14 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=46.1
Q ss_pred cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee--hhhhccccceeEEEEecC---CCEEEEEcCC------CcEE
Q 044557 187 AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV--DVLERHNSGINALALSCD---GSVLYSGACD------RSII 255 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~--~~~~~h~~~v~~i~~s~~---~~~l~s~~~d------~~i~ 255 (362)
..+.++|.|+|.++.+..+|.|.+++ ++.. ..+. ............|+++|+ +..|+.+... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999988888889999998 3321 1111 111112345788999998 6666555432 5677
Q ss_pred EEecc
Q 044557 256 VWEKE 260 (362)
Q Consensus 256 ~wd~~ 260 (362)
.|+..
T Consensus 109 r~~~~ 113 (352)
T 2ism_A 109 RLRHL 113 (352)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77765
No 322
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=87.17 E-value=4.7 Score=35.21 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=46.2
Q ss_pred cEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeeh--hhhccccceeEEEEecC---CCEEEEEcC----C----Cc
Q 044557 187 AINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVD--VLERHNSGINALALSCD---GSVLYSGAC----D----RS 253 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~h~~~v~~i~~s~~---~~~l~s~~~----d----~~ 253 (362)
..+.++|.|+|.++.+..+|.|++++. ++. ..+.. ...........|+++|+ +..|+.+.. + +.
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 467899999999888888899999973 332 11111 11112345788999998 556555443 3 56
Q ss_pred EEEEeccC
Q 044557 254 IIVWEKEE 261 (362)
Q Consensus 254 i~~wd~~~ 261 (362)
|..|+...
T Consensus 107 v~r~~~~~ 114 (354)
T 3a9g_A 107 VIRGRLDG 114 (354)
T ss_dssp EEEEEECS
T ss_pred EEEEEECC
Confidence 77777654
No 323
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.74 E-value=14 Score=33.67 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=60.3
Q ss_pred cCceeEEEEecCCC-EEEEEECCCcEEEEECCCce---EEEeee----c----cCcccEEEEEEcCC----CcEE-EEe-
Q 044557 142 VDAVSALALTKDET-LLYSVSWDRTIKIWRTSDFK---CLESIT----N----AHDDAINAVALSDD----GDVY-TGS- 203 (362)
Q Consensus 142 ~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~---~~~~~~----~----~h~~~v~~v~~~~~----~~~~-s~~- 203 (362)
......|+|.||+. .|+.+...|.|++++..... .+..+. . ........|+++|+ +.|+ +-+
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 35567899999996 34455778999999754321 111111 0 01345788999996 5543 322
Q ss_pred -CC----------CeEEEEeCCCCCC-------cceeehh---hhccccceeEEEEecCCCEEEEEcCC
Q 044557 204 -AD----------KKIKVWRRSPGNK-------KHSLVDV---LERHNSGINALALSCDGSVLYSGACD 251 (362)
Q Consensus 204 -~d----------g~i~iw~~~~~~~-------~~~~~~~---~~~h~~~v~~i~~s~~~~~l~s~~~d 251 (362)
.+ ..|.-|.+..+.. ...++.. ...|. ...|+|.|||.+.++-+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCCC
Confidence 12 1444566653210 1112211 11243 5789999999877766543
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=85.47 E-value=18 Score=31.48 Aligned_cols=75 Identities=25% Similarity=0.294 Sum_probs=46.7
Q ss_pred ccEEEEEEcCCCcEEEEeC-CCeEEEEeCCCCCCcceee---hhhhccccceeEEEEecC---CCEEEEE---cCCCcEE
Q 044557 186 DAINAVALSDDGDVYTGSA-DKKIKVWRRSPGNKKHSLV---DVLERHNSGINALALSCD---GSVLYSG---ACDRSII 255 (362)
Q Consensus 186 ~~v~~v~~~~~~~~~s~~~-dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i~~s~~---~~~l~s~---~~d~~i~ 255 (362)
...+.++|.|+|.++.+.. .|.|++++...+... .+. ............|+++|+ +..|+.. ..++.|.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 3568999999999777776 899999976544321 111 111223456788999995 4445432 3455666
Q ss_pred EEeccC
Q 044557 256 VWEKEE 261 (362)
Q Consensus 256 ~wd~~~ 261 (362)
-|....
T Consensus 111 R~~~~~ 116 (347)
T 3das_A 111 RMLYDE 116 (347)
T ss_dssp EEEBCT
T ss_pred EEEeCC
Confidence 665543
No 325
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=85.21 E-value=17 Score=31.03 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=89.7
Q ss_pred ceeEEEEecCC-CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEEEEe--CCCeEEEEeCCCCCCc
Q 044557 144 AVSALALTKDE-TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVYTGS--ADKKIKVWRRSPGNKK 219 (362)
Q Consensus 144 ~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~s~~--~dg~i~iw~~~~~~~~ 219 (362)
....+++.+.+ ++.++-...+.|.+.++..... ..+..........+++.|. |.++.+. ..+.|...+++. ...
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~ 157 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSR 157 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSC
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCe
Confidence 45678888744 4455555678999999875432 2222223345788999875 5555444 357888888753 222
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC-eEEEeeCCCc
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD-LVCSGSADKT 297 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~s~s~D~~ 297 (362)
..+.. ..-...+.|+++|++..|+.+ +..+.|..+++.... ...+. .+.......+++..+ ++.+-...+.
T Consensus 158 ~~~~~---~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~---~~~~~~P~glav~~~~lywtd~~~~~ 230 (318)
T 3sov_A 158 FIIIN---SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVV---KGSLPHPFALTLFEDILYWTDWSTHS 230 (318)
T ss_dssp EEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE---CSCCSCEEEEEEETTEEEEEETTTTE
T ss_pred EEEEE---CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEe---cCCCCCceEEEEeCCEEEEEecCCCe
Confidence 22221 112235789999977766655 456789999886432 22222 222334456666655 5666667778
Q ss_pred EEEeeC
Q 044557 298 IRIWRG 303 (362)
Q Consensus 298 i~~W~~ 303 (362)
|..++.
T Consensus 231 V~~~~~ 236 (318)
T 3sov_A 231 ILACNK 236 (318)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 887774
No 326
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=84.68 E-value=22 Score=32.04 Aligned_cols=127 Identities=11% Similarity=0.149 Sum_probs=81.2
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhh
Q 044557 147 ALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVL 226 (362)
Q Consensus 147 ~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~ 226 (362)
+.-.+|..+.+|--. ..++.|+|+++...+..... ...|..-.|-.+..++- -.+..|.-|+++......+. +
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~--~e~VvfWkWis~~~l~l-VT~taVyHWsi~~~s~P~kv---F 142 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISLNTVAL-VTDNAVYHWSMEGESQPVKM---F 142 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC--SSCCCEEEEEETTEEEE-ECSSEEEEEESSSSCCCEEE---E
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec--CCCceEEEecCCCeEEE-EcCCeeEEecccCCCCchhh---e
Confidence 344678888777665 68999999999988887653 34566666654444333 24568999998753322222 2
Q ss_pred hcc----ccceeEEEEecCCCEEEEEcC-------CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEe
Q 044557 227 ERH----NSGINALALSCDGSVLYSGAC-------DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVV 285 (362)
Q Consensus 227 ~~h----~~~v~~i~~s~~~~~l~s~~~-------d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 285 (362)
.+| ...|.....+++.++++..|- .|.+-+|+.+... ...++||......+.+.
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-----sQ~ieGhaa~F~~~~~~ 207 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKME 207 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-----EEEECCSEEEEEEEECT
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-----cchheeeeeeeEEEecC
Confidence 222 356777788899988774432 3567888876432 23467887766555554
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=84.54 E-value=3.4 Score=35.87 Aligned_cols=107 Identities=10% Similarity=0.147 Sum_probs=60.1
Q ss_pred CEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEc---CCCcEEEE--eCCCeEEEEeCCCCCCcceeehhhhc-
Q 044557 155 TLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALS---DDGDVYTG--SADKKIKVWRRSPGNKKHSLVDVLER- 228 (362)
Q Consensus 155 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~---~~~~~~s~--~~dg~i~iw~~~~~~~~~~~~~~~~~- 228 (362)
..++.++.||.|.-.|.++++.+-.+......++....-. .++.++.+ ..||.+..++..++...... ....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~--~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL--SIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE--EHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee--ccccc
Confidence 4677899999999999999987766543311222221100 13344444 57999988888766322111 1110
Q ss_pred -cccceeE---EEE-e----cCCCEEEEEcCCCcEEEEeccCCC
Q 044557 229 -HNSGINA---LAL-S----CDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 229 -h~~~v~~---i~~-s----~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
...++.. ..+ . ..+..+++|+.++.+...|+.+++
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 1122211 000 0 045678888888888888877644
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=84.54 E-value=23 Score=32.00 Aligned_cols=117 Identities=12% Similarity=0.166 Sum_probs=65.1
Q ss_pred eeEEEEecCCCEEEEEE-------CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCC---cEEE-Ee---CCCeEEE
Q 044557 145 VSALALTKDETLLYSVS-------WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDG---DVYT-GS---ADKKIKV 210 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s-------~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~~s-~~---~dg~i~i 210 (362)
|.....+++.++++..| -.|.+.+|..+.... + ...+|....-.+.+..+. .+++ +. ..+++.|
T Consensus 153 IInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q-~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-Q-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp EEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-E-EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred EEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-c-hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 44445566666555332 136788999886543 2 234676544444333221 2332 22 2378888
Q ss_pred EeCCCC-CCccee----ehhh---hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 211 WRRSPG-NKKHSL----VDVL---ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 211 w~~~~~-~~~~~~----~~~~---~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
-++... .....+ .... ..-..-.-++.+++.-..++.-..-|.|.+||++++.
T Consensus 231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred EEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence 887543 111111 1110 0112223467888888889999999999999998754
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=83.54 E-value=19 Score=31.14 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=44.8
Q ss_pred cEEEEEEcCCCc-EEEEeCCCeEEEEeCCCCCCcceee---hhhhccccceeEEEEecC---CCEEEEEcC--------C
Q 044557 187 AINAVALSDDGD-VYTGSADKKIKVWRRSPGNKKHSLV---DVLERHNSGINALALSCD---GSVLYSGAC--------D 251 (362)
Q Consensus 187 ~v~~v~~~~~~~-~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~h~~~v~~i~~s~~---~~~l~s~~~--------d 251 (362)
..+.|+|.|+|+ ++.+...|.|++++.. +.....+. ............|+++|+ +..|+.+.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 9988889999999853 21110011 111112345678999996 555554432 2
Q ss_pred CcEEEEeccC
Q 044557 252 RSIIVWEKEE 261 (362)
Q Consensus 252 ~~i~~wd~~~ 261 (362)
..|..|+...
T Consensus 98 ~~v~r~~~~~ 107 (353)
T 2g8s_A 98 TAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEECT
T ss_pred eEEEEEEECC
Confidence 3566666543
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=82.58 E-value=21 Score=30.06 Aligned_cols=142 Identities=8% Similarity=0.035 Sum_probs=65.8
Q ss_pred CcEEEEECCCceEEEeeeccC--cccEEEEEEcCCCc-EEEEeC----C-------CeEEEEeCCCCCCcceeehhhhcc
Q 044557 164 RTIKIWRTSDFKCLESITNAH--DDAINAVALSDDGD-VYTGSA----D-------KKIKVWRRSPGNKKHSLVDVLERH 229 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h--~~~v~~v~~~~~~~-~~s~~~----d-------g~i~iw~~~~~~~~~~~~~~~~~h 229 (362)
..+.+||..+.+-.. ..... ...-.+++. .++. ++.|+. + ..+..||..+..- .....+...
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~ 88 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGMPPLPSP 88 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EECCCBSSC
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EECCCCCcc
Confidence 678899988876432 11111 111222333 3555 455552 1 1267778765421 111111111
Q ss_pred ccceeEEEEecCCCEEEEEcCC--------CcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeC-C-----
Q 044557 230 NSGINALALSCDGSVLYSGACD--------RSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSA-D----- 295 (362)
Q Consensus 230 ~~~v~~i~~s~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~-D----- 295 (362)
...-..+. -+++.++.||.+ +.+.+||..+. ....+..+........++...+.+++.|+. +
T Consensus 89 r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 89 RCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp EESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred hhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 11111122 266777777743 45788887653 233333332222222233334446666665 2
Q ss_pred CcEEEeeCCCCceeeeeE
Q 044557 296 KTIRIWRGIDRNYTCLAV 313 (362)
Q Consensus 296 ~~i~~W~~~~~~~~~~~~ 313 (362)
..+.+||.....+..+..
T Consensus 165 ~~~~~yd~~~~~W~~~~~ 182 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAP 182 (315)
T ss_dssp CCEEEEETTTTEEEECCC
T ss_pred ceEEEEeCCCCeEEECCC
Confidence 357778765555554443
No 331
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=81.52 E-value=36 Score=32.15 Aligned_cols=154 Identities=12% Similarity=0.049 Sum_probs=87.0
Q ss_pred CceeEEEEecCCCEEEEEE-CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEE-EEeCCCeEEEEeCCCCCCc
Q 044557 143 DAVSALALTKDETLLYSVS-WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVY-TGSADKKIKVWRRSPGNKK 219 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~-s~~~dg~i~iw~~~~~~~~ 219 (362)
..+..++|++.+..|+-+. ..+.|..++++.......+....-.....+++.+. +.++ +-...+.|.+.+++.. ..
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~ 118 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LR 118 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SC
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-CE
Confidence 3467889998766665554 46788888887653222222222246789999984 4554 5556789999998643 22
Q ss_pred ceeehhhhccccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeC
Q 044557 220 HSLVDVLERHNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSA 294 (362)
Q Consensus 220 ~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~ 294 (362)
..+.. ..-.....|++.|.+..|+-... .+.|...++... ....++ .........+++++ . ++++=+.
T Consensus 119 ~~l~~---~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~l~---~~~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 119 KVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIII---NSEIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp EEEEC---SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEE---CSSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEEe---CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEEEE---eCCCCCCcEEEEEccCCEEEEEeCC
Confidence 22321 12234668999997666665543 345665665432 222221 11233456677763 3 4555556
Q ss_pred CCcEEEeeCC
Q 044557 295 DKTIRIWRGI 304 (362)
Q Consensus 295 D~~i~~W~~~ 304 (362)
.+.|...+..
T Consensus 192 ~~~I~~~~~d 201 (619)
T 3s94_A 192 LNFIHKSNLD 201 (619)
T ss_dssp TCCEEEESSS
T ss_pred CCeEEEecCC
Confidence 6777777753
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=80.65 E-value=27 Score=30.17 Aligned_cols=98 Identities=12% Similarity=0.183 Sum_probs=54.2
Q ss_pred CcEEEEECCCceEEEeeeccCcccEEEEEEcCC--C-cEEE-E---eCCCeEEEEeCCCC-CCccee----ehhh--h-c
Q 044557 164 RTIKIWRTSDFKCLESITNAHDDAINAVALSDD--G-DVYT-G---SADKKIKVWRRSPG-NKKHSL----VDVL--E-R 228 (362)
Q Consensus 164 ~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~--~-~~~s-~---~~dg~i~iw~~~~~-~~~~~~----~~~~--~-~ 228 (362)
|.+.+|..+..... ...+|......+.+..+ . .+++ + ...+++.|-++... .....+ ...+ . .
T Consensus 180 G~mQLYS~er~~sQ--~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea 257 (365)
T 2xzh_A 180 GAMQLYSVDRKVSQ--PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 257 (365)
T ss_dssp EEEEEEETTTTEEE--EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTC
T ss_pred eeEEEEeecccccc--eeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccc
Confidence 67889998876432 23467554433333211 1 2332 1 12358888887443 111111 1100 0 1
Q ss_pred cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 229 HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 229 h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
-..-.-++.+++--..++.-..-|.|++||++++.
T Consensus 258 ~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 258 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred cCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 11223367778877889999999999999998754
No 333
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=78.08 E-value=47 Score=31.38 Aligned_cols=179 Identities=12% Similarity=0.014 Sum_probs=89.1
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcEE-EEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEec
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDVY-TGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSC 240 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 240 (362)
.+.|+..++........+....-..+..++|.+. +.++ +-...+.|..++++......... ...-.....+++.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~---~~~~~~P~GlAvD~ 93 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---VSGLLSPDGLACDW 93 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE---CSSCSCEEEEEEET
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE---eCCCCCcCeEEEEe
Confidence 5677777776542111111122345678899874 4554 54567888888876432111111 11123567899998
Q ss_pred CCCEEE-EEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEee-CCCcEEEeeCCCCceeeeeEec
Q 044557 241 DGSVLY-SGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGS-ADKTIRIWRGIDRNYTCLAVLE 315 (362)
Q Consensus 241 ~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s-~D~~i~~W~~~~~~~~~~~~l~ 315 (362)
.+..|+ +-...+.|.+.++..... ..+. .........+++.+ . ++.|-- ....|...+........+ ..
T Consensus 94 ~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~---~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l--~~ 167 (619)
T 3s94_A 94 LGEKLYWTDSETNRIEVSNLDGSLR-KVLF---WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII--IN 167 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSC-EEEE---CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--EC
T ss_pred cCCEEEEEeCCCCEEEEEECCCCCE-EEEE---eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE--Ee
Confidence 655554 555678899999864322 1222 12334456777764 3 444432 234444444322211111 12
Q ss_pred CCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEeccc
Q 044557 316 GHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQISF 358 (362)
Q Consensus 316 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~~ 358 (362)
..-....++++.++.+ ++.++=+..+.|...+++.
T Consensus 168 ~~~~~P~Glald~~~~--------~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQ--------KLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp SSCSSEEEEEEETTTT--------EEEEEETTTCCEEEESSSC
T ss_pred CCCCCCcEEEEEccCC--------EEEEEeCCCCeEEEecCCC
Confidence 2334577888876543 3333334455666666643
No 334
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=76.48 E-value=53 Score=31.12 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=89.6
Q ss_pred ceeEEEEecCCCEEE-EEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcE-EEEeCCCeEEEEeCCCCCCcc
Q 044557 144 AVSALALTKDETLLY-SVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDV-YTGSADKKIKVWRRSPGNKKH 220 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~-~s~~~dg~i~iw~~~~~~~~~ 220 (362)
.+..++|++.+..|+ +-..++.|..+++........+. ........+++.+. +.+ ++-...+.|.+.+++... ..
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~ 115 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQ 115 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CE
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe-CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EE
Confidence 467889998766555 44567889998887543322222 22234678888764 455 455567899999886432 22
Q ss_pred eeehhhhccccceeEEEEecCCCEEEEEcC--CCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeC--C-eEEEeeCC
Q 044557 221 SLVDVLERHNSGINALALSCDGSVLYSGAC--DRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVS--D-LVCSGSAD 295 (362)
Q Consensus 221 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~-~~~s~s~D 295 (362)
.+.. ..-.....|++.|....|+-... .+.|...++.... ...+. . .......++++. . ++.+=+..
T Consensus 116 ~l~~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~---~-~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 116 VLVW---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLV---P-NVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EEEC---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEE---C-SCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEEe---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEE---C-CCCCcceEEEccccCEEEEEECCC
Confidence 2221 12234578999996666665542 4567777765432 22222 1 233456777764 3 45555666
Q ss_pred CcEEEeeCCC
Q 044557 296 KTIRIWRGID 305 (362)
Q Consensus 296 ~~i~~W~~~~ 305 (362)
+.|...+...
T Consensus 188 ~~I~~~d~dG 197 (628)
T 4a0p_A 188 NLIESSNMLG 197 (628)
T ss_dssp TEEEEEETTS
T ss_pred CEEEEEcCCC
Confidence 7788887543
No 335
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.71 E-value=5.2 Score=40.16 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=33.0
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT 181 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 181 (362)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777788888999999999999999999999887653
No 336
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=75.20 E-value=50 Score=30.23 Aligned_cols=114 Identities=11% Similarity=0.137 Sum_probs=66.2
Q ss_pred ceeEEEE-------ecCCCEEEEEECCC-------cEEEEECCC-ceEE-----EeeeccCcccEEEEEEcC-CCcEE-E
Q 044557 144 AVSALAL-------TKDETLLYSVSWDR-------TIKIWRTSD-FKCL-----ESITNAHDDAINAVALSD-DGDVY-T 201 (362)
Q Consensus 144 ~v~~~~~-------~~~~~~l~s~s~d~-------~i~iwd~~~-~~~~-----~~~~~~h~~~v~~v~~~~-~~~~~-s 201 (362)
....++| +++++.|+.+...+ .|.+.+... +... ..+.. ......++++| ++.|+ +
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFN 264 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCeEEEE
Confidence 4788999 99999666666554 255555333 1111 11111 11234678888 45655 5
Q ss_pred EeCCCeEEEEeCC-------CCCC-----------cceeehhhhccccceeEEEEecCCCEEEEE-cCCCcEEEEeccC
Q 044557 202 GSADKKIKVWRRS-------PGNK-----------KHSLVDVLERHNSGINALALSCDGSVLYSG-ACDRSIIVWEKEE 261 (362)
Q Consensus 202 ~~~dg~i~iw~~~-------~~~~-----------~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~~d~~i~~wd~~~ 261 (362)
-..++.|..+|+. ++.. ...+. .. ........|+|+|+|.+|+.+ .....|+.++...
T Consensus 265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-TI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-EC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ECCCCEEEEEecccccccccCceeecccccccccccceeE-ec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 5577889999987 4432 00111 11 112335789999999965555 5567888876543
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=74.83 E-value=63 Score=31.18 Aligned_cols=154 Identities=12% Similarity=0.058 Sum_probs=86.1
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeee-cc----CcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCC--
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT-NA----HDDAINAVALSDDGDVYTGSADKKIKVWRRSPG-- 216 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~----h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~-- 216 (362)
.|.++.-.+++++.+ |+ ++-|..||..+++...... .. ....|.++...++|.+..|+..+-+.+++..+.
T Consensus 374 ~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~ 451 (758)
T 3ott_A 374 RIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQ 451 (758)
T ss_dssp CEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccc
Confidence 477887777777654 44 4578899988765433211 11 123588888888888888887766777775320
Q ss_pred CCcceee-----hhhh-ccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecC--ccceeEEEEEeCC-
Q 044557 217 NKKHSLV-----DVLE-RHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRG--HTKSILCMAVVSD- 287 (362)
Q Consensus 217 ~~~~~~~-----~~~~-~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~- 287 (362)
....... .... .....|.++...++|..-+.++..+-+..+|..+. ...... ..+ ....+.++....+
T Consensus 452 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~--~~~~~~-~~~~~~~~~~~~i~~d~~g 528 (758)
T 3ott_A 452 STSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTR--EVTKLF-ADELTGEKSPNYLLCDEDG 528 (758)
T ss_dssp CCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTT--EEEEEC-TTTSCGGGCEEEEEECTTS
T ss_pred cCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCC--ceEEec-CCCcCCCcccceEEECCCC
Confidence 0000010 0011 12235888888888886654444556878887542 222211 111 1234666666543
Q ss_pred eEEEeeCCCcEEEeeC
Q 044557 288 LVCSGSADKTIRIWRG 303 (362)
Q Consensus 288 ~~~s~s~D~~i~~W~~ 303 (362)
.+-.|+.. .+..++.
T Consensus 529 ~lWigt~~-Gl~~~~~ 543 (758)
T 3ott_A 529 LLWVGFHG-GVMRINP 543 (758)
T ss_dssp CEEEEETT-EEEEECC
T ss_pred CEEEEecC-ceEEEec
Confidence 44445544 4666763
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=73.96 E-value=24 Score=32.91 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=47.8
Q ss_pred eeEEEEecCCCEEEEEE-CCCcEEEEECCCceE-------------EEeeeccCcccEEEEEEcCCCcEE-EEeCCCeEE
Q 044557 145 VSALALTKDETLLYSVS-WDRTIKIWRTSDFKC-------------LESITNAHDDAINAVALSDDGDVY-TGSADKKIK 209 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~~-------------~~~~~~~h~~~v~~v~~~~~~~~~-s~~~dg~i~ 209 (362)
.-.+.++|||++++.++ .+.++.++|++.... ..... -.-.....+|.++|..+ |.--|..|.
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCceEeeeeecceEE
Confidence 44678899999877765 667999999874211 11221 12345778899999744 556899999
Q ss_pred EEeCCC
Q 044557 210 VWRRSP 215 (362)
Q Consensus 210 iw~~~~ 215 (362)
.|+++.
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999864
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=73.78 E-value=77 Score=33.45 Aligned_cols=124 Identities=12% Similarity=0.162 Sum_probs=77.4
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhc
Q 044557 149 ALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLER 228 (362)
Q Consensus 149 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 228 (362)
-.+|..+++|--. ..++.|+|+++...+.... ...+|..-.|-.+..++-. ++..|.-|++.... .....+..
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~~l~lV-T~~aVyHW~~~~~s---~P~k~fdR 144 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNTVALV-TDNAVYHWSMEGES---QPVKMFDR 144 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCCCeeEEE-cCCeEEEeccCCCC---ccHHHHhc
Confidence 3577777776654 6899999999887776654 2346766777655543332 35689999996532 22334444
Q ss_pred c----ccceeEEEEecCCCEEEEEc-------CCCcEEEEeccCCCCcEEEEEeecCccceeEEEEE
Q 044557 229 H----NSGINALALSCDGSVLYSGA-------CDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAV 284 (362)
Q Consensus 229 h----~~~v~~i~~s~~~~~l~s~~-------~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~ 284 (362)
| ...|.....+++.++++..| -.|.+-+|+.+... ...+.||......+..
T Consensus 145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-----sQ~iegha~~F~~~~~ 206 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKM 206 (1630)
T ss_pred chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-----chhhhHhHhhhheecc
Confidence 4 45677778888888877443 34677888876422 2235666655444433
No 340
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=73.68 E-value=86 Score=32.24 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=49.7
Q ss_pred cCceeEEEEecC------CCEEEEEEC-CCcEEEEECCCceEEEeeeccCcccEEEEEEcC-CC--cEEEEeCCCeEEEE
Q 044557 142 VDAVSALALTKD------ETLLYSVSW-DRTIKIWRTSDFKCLESITNAHDDAINAVALSD-DG--DVYTGSADKKIKVW 211 (362)
Q Consensus 142 ~~~v~~~~~~~~------~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~-~~--~~~s~~~dg~i~iw 211 (362)
.+.|.|+++.|. +++++.|.+ |++|+|+++.+.+.+.....+.+....++.+.. ++ .++.|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457889988753 479999997 999999999887665443332233455555431 23 36788899988766
Q ss_pred eCC
Q 044557 212 RRS 214 (362)
Q Consensus 212 ~~~ 214 (362)
.++
T Consensus 633 ~~d 635 (1158)
T 3ei3_A 633 GLN 635 (1158)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=68.01 E-value=1.3e+02 Score=31.90 Aligned_cols=117 Identities=12% Similarity=0.126 Sum_probs=61.2
Q ss_pred eeEEEEecCCCEEEEEE-------CCCcEEEEECCCceEEEeeeccCcccEEEEEEc--CC-CcEEEE----eCCCeEEE
Q 044557 145 VSALALTKDETLLYSVS-------WDRTIKIWRTSDFKCLESITNAHDDAINAVALS--DD-GDVYTG----SADKKIKV 210 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s-------~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~--~~-~~~~s~----~~dg~i~i 210 (362)
|..-..+++.++++..| -.|.+.+|.++.... ....+|......+... +. ..+++- ...+++.|
T Consensus 153 IinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi 230 (1630)
T 1xi4_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (1630)
T ss_pred eEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence 44444556666554332 347888998875432 1223555443333332 11 123321 12368888
Q ss_pred EeCCCC---CCcc--eeehhhhc---cccceeEEEEecCCCEEEEEcCCCcEEEEeccCCC
Q 044557 211 WRRSPG---NKKH--SLVDVLER---HNSGINALALSCDGSVLYSGACDRSIIVWEKEEDD 263 (362)
Q Consensus 211 w~~~~~---~~~~--~~~~~~~~---h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~ 263 (362)
-++... .+.. +....... -..-.-++.+++.-..++.-..-|.|.+||++++.
T Consensus 231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (1630)
T ss_pred EecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence 877543 1111 11111100 11112357778877888888999999999998754
No 342
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.22 E-value=5.9 Score=40.68 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=32.1
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESIT 181 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 181 (362)
.+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566677888999999999999999999999887654
No 343
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=65.90 E-value=91 Score=29.46 Aligned_cols=177 Identities=12% Similarity=0.006 Sum_probs=96.9
Q ss_pred CCCcEEEEECCCceEEEeeeccCcccEEEEEEcCC-CcE-EEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEe
Q 044557 162 WDRTIKIWRTSDFKCLESITNAHDDAINAVALSDD-GDV-YTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALS 239 (362)
Q Consensus 162 ~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s 239 (362)
..+.|+..++........+....-..+..++|.+. +.+ ++-..++.|..+++.... ...+.. ........+++.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~---~g~~~P~GlAvD 88 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVE---FGLDYPEGMAVD 88 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC---SSCSCCCEEEEE
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEe---CCCCCcceEEEE
Confidence 45788888887654322222222345778999875 454 466678899999886432 222221 111345678888
Q ss_pred cCCCEE-EEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCC---eEEEe-eCCCcEEEeeCCCCceeeeeEe
Q 044557 240 CDGSVL-YSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSD---LVCSG-SADKTIRIWRGIDRNYTCLAVL 314 (362)
Q Consensus 240 ~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~s~-s~D~~i~~W~~~~~~~~~~~~l 314 (362)
+.+..| ++-...+.|.+.++..... ..+. .........+++.+. ++.|- +..+.|...+....... .+
T Consensus 89 ~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~---~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~---~l 161 (628)
T 4a0p_A 89 WLGKNLYWADTGTNRIEVSKLDGQHR-QVLV---WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT---TL 161 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSTTC-EEEE---CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EE
T ss_pred eCCCEEEEEECCCCEEEEEecCCCcE-EEEE---eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE---EE
Confidence 765555 4555677898988864322 2221 123345678888752 34443 22455655554332222 22
Q ss_pred cCCCCcEEEEEeeecCCccCCCCCceEEEecCCCCcEEEEecc
Q 044557 315 EGHRGPVKCLAAAIDNDRCDSSDTSYLVCSGSLDCDIKVWQIS 357 (362)
Q Consensus 315 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~s~D~~i~~W~~~ 357 (362)
...-....++++.++++ ++.++=...+.|...++.
T Consensus 162 ~~~~~~P~GlalD~~~~--------~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 162 VPNVGRANGLTIDYAKR--------RLYWTDLDTNLIESSNML 196 (628)
T ss_dssp ECSCSSEEEEEEETTTT--------EEEEEETTTTEEEEEETT
T ss_pred ECCCCCcceEEEccccC--------EEEEEECCCCEEEEEcCC
Confidence 22345677888876543 233333444566666654
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=65.89 E-value=96 Score=29.70 Aligned_cols=155 Identities=10% Similarity=0.075 Sum_probs=76.7
Q ss_pred CCCEEEEEECCC------cEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEEEeCCC--eEEEEeCCCCCCcceee
Q 044557 153 DETLLYSVSWDR------TIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYTGSADK--KIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 153 ~~~~l~s~s~d~------~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s~~~dg--~i~iw~~~~~~~~~~~~ 223 (362)
++++++.||.++ .+.+||..+.+....-.......-.+++...+++ ++.|+.++ .+.+||..+.. -...
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEc
Confidence 667777776543 5788898875432211101111112233323566 45565544 68889887643 1111
Q ss_pred hh---hhccccceeEEEEecC-CCEEEEEcC--C-----CcEEEEeccCCCC----cEEEEEeec-CccceeEEEEEe-C
Q 044557 224 DV---LERHNSGINALALSCD-GSVLYSGAC--D-----RSIIVWEKEEDDG----NILVVGALR-GHTKSILCMAVV-S 286 (362)
Q Consensus 224 ~~---~~~h~~~v~~i~~s~~-~~~l~s~~~--d-----~~i~~wd~~~~~~----~~~~~~~~~-~h~~~v~~~~~~-~ 286 (362)
.. +......-.++.+..+ ++.++.||. + +.+..||..+... ....+.... .......++.+. +
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~ 608 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR 608 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC
Confidence 11 1112222334555555 667777776 2 3588889876441 022222211 111112334455 4
Q ss_pred CeEEEeeC--------CCcEEEeeCCCCcee
Q 044557 287 DLVCSGSA--------DKTIRIWRGIDRNYT 309 (362)
Q Consensus 287 ~~~~s~s~--------D~~i~~W~~~~~~~~ 309 (362)
.+++.|+. -..|.+||.....+.
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 56666664 345888886655554
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=65.17 E-value=79 Score=28.45 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=38.7
Q ss_pred cEEEEEEcCCCcEEEEeCCC-eEEEEeCCCCCCcceeehh---hh--ccccceeEEEEecC---CCEEEEEc
Q 044557 187 AINAVALSDDGDVYTGSADK-KIKVWRRSPGNKKHSLVDV---LE--RHNSGINALALSCD---GSVLYSGA 249 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~dg-~i~iw~~~~~~~~~~~~~~---~~--~h~~~v~~i~~s~~---~~~l~s~~ 249 (362)
..+.++|.|+|+++.+...+ .|++++..++.. ..+... +. ........|+|+|| +..|+.+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 45789999999988777775 688887654432 111111 10 12345678999996 55555443
No 346
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=63.25 E-value=13 Score=35.68 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=29.4
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeec
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITN 182 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 182 (362)
.|.++.+ +..++++-+.|+++|+|++++++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3454443 478999999999999999999998876653
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=57.31 E-value=21 Score=30.89 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=37.8
Q ss_pred ECCCcEEEEECCCceEEEeeecc---CcccEEE---EEE------cCCCcEEEEeCCCeEEEEeCCCCCCcce
Q 044557 161 SWDRTIKIWRTSDFKCLESITNA---HDDAINA---VAL------SDDGDVYTGSADKKIKVWRRSPGNKKHS 221 (362)
Q Consensus 161 s~d~~i~iwd~~~~~~~~~~~~~---h~~~v~~---v~~------~~~~~~~s~~~dg~i~iw~~~~~~~~~~ 221 (362)
+.||.|..++.+++.....+... ...++.. ..+ +.++.+++|+.+|.+.-.|+.+|+....
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 57899999998877543322211 1222221 001 2466789999999999999998875443
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=53.64 E-value=1.6e+02 Score=28.21 Aligned_cols=151 Identities=12% Similarity=0.094 Sum_probs=71.9
Q ss_pred cCCCEEEEEECC----CcEEEEECCCceEEEee-e-----ccC-cccEEEEEEcCCCc-EEEEeCC------CeEEEEeC
Q 044557 152 KDETLLYSVSWD----RTIKIWRTSDFKCLESI-T-----NAH-DDAINAVALSDDGD-VYTGSAD------KKIKVWRR 213 (362)
Q Consensus 152 ~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~-~-----~~h-~~~v~~v~~~~~~~-~~s~~~d------g~i~iw~~ 213 (362)
.++.+++.||.+ ..+.+||..+.+....- . ... ......+.+..+++ ++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777754 45788887765432211 0 011 11122233332565 4555533 35778887
Q ss_pred CCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCC--cEEEEeccCCCCcEEEEEe---ecCccceeEEEEEe---
Q 044557 214 SPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDR--SIIVWEKEEDDGNILVVGA---LRGHTKSILCMAVV--- 285 (362)
Q Consensus 214 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~---~~~h~~~v~~~~~~--- 285 (362)
.+.. .+....+...... .+.+.-.+++.++.||.++ .+.+||..+. ....+.. +........++.+.
T Consensus 476 ~t~~--W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 476 KTRE--WSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEE--IFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTE--EEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTT--EEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCc--EEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCC--ceEEccCCCCCCCcccceeEEEEeCCC
Confidence 6532 1111111111111 1222224788888888765 6888888653 2222221 11111111234444
Q ss_pred CCeEEEeeC--C-----CcEEEeeCCCCc
Q 044557 286 SDLVCSGSA--D-----KTIRIWRGIDRN 307 (362)
Q Consensus 286 ~~~~~s~s~--D-----~~i~~W~~~~~~ 307 (362)
+.+++.|+. + ..+..|+.....
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 336666665 2 347777765544
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=48.68 E-value=1.1e+02 Score=25.20 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=63.2
Q ss_pred CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCC
Q 044557 163 DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDG 242 (362)
Q Consensus 163 d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 242 (362)
||.|..|-....-.+.... .-...|..++......++ -. ||.|..|-......... .......|..|+...
T Consensus 80 ~G~v~~wG~n~~Gqlg~P~-~~~~~v~~ia~G~~hs~a-l~-~G~v~~wG~n~~gqlg~----~~~~~~~i~~i~~G~-- 150 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTVPA-EARSGVDAIAAGAWASYA-LK-DGKVIAWGDDSDGQTTV----PAEAQSGVTALDGGV-- 150 (282)
T ss_dssp TTEEEEEECCTTSTTCCCG-GGSSSEEEEEEETTEEEE-EE-TTEEEEEECCTTSTTSC----CGGGGSSEEEEEECS--
T ss_pred CCEEEEeeCCCCCCCCCCc-ccCCCeEEEECcCCEEEE-Ee-CCeEEEecCCCCCcCCC----CccCCCCeEEEEccc--
Confidence 7888888654321111100 112356666655443333 34 99999996543221111 111234566665433
Q ss_pred CEEEEEcCCCcEEEEeccCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEee
Q 044557 243 SVLYSGACDRSIIVWEKEEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWR 302 (362)
Q Consensus 243 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~ 302 (362)
.+.+.-. ||.|..|-........ ....-...|..++-...+.+.- .|+.|..|-
T Consensus 151 ~~~~~l~-~G~v~~wG~n~~gqlg----~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG 204 (282)
T 3qhy_B 151 YTALAVK-NGGVIAWGDNYFGQTT----VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWG 204 (282)
T ss_dssp SEEEEEE-TTEEEEEECCTTSTTS----CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEE
T ss_pred CEEEEEE-CCEEEEecCCCCCCCC----CceecCCCeEEEEecCCEEEEE-ECCeEEEEE
Confidence 2322233 7999999764322110 0001124567777666644444 699999995
No 350
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=48.31 E-value=1.9e+02 Score=27.70 Aligned_cols=169 Identities=11% Similarity=0.115 Sum_probs=86.5
Q ss_pred ceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceee
Q 044557 144 AVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLV 223 (362)
Q Consensus 144 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~ 223 (362)
.|.++...+++. |..|+.+ -+..||..+.+... ........|.++.. .+|.+..++.+ -+..|+..+... ....
T Consensus 64 ~i~~i~~d~~g~-lWigT~~-Gl~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~-~~~~ 137 (758)
T 3ott_A 64 RIYCGVIIDNTY-LYMGTDN-GILVYNYRADRYEQ-PETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKL-TSFD 137 (758)
T ss_dssp CEEEEEEETTTE-EEEEETT-EEEEEETTTTEECC-CSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCE-EEEC
T ss_pred eEEEEEEcCCCc-EEEEeCC-CeEEEeCCCCEEEC-cccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeE-EEec
Confidence 467776676664 4455655 47889987764322 11112234666654 46777777766 577788765431 1111
Q ss_pred hhh-hccccceeEEEEecCCCEEEEEcCCCcEEEEeccCCCCcEEEEEeecCc----cceeEEEEEeC--CeEEEeeCCC
Q 044557 224 DVL-ERHNSGINALALSCDGSVLYSGACDRSIIVWEKEEDDGNILVVGALRGH----TKSILCMAVVS--DLVCSGSADK 296 (362)
Q Consensus 224 ~~~-~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~h----~~~v~~~~~~~--~~~~s~s~D~ 296 (362)
... ......|.++...++|...+ |...| +..++.... ..... ..... ...|.++.... +.+-.|+. +
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~--~~~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~ 211 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNG--KFEGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G 211 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTT--EEEEE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred cCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCC--ceEEe-cCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence 111 11234577787777776555 44444 667776532 12111 11111 12377777653 34444443 4
Q ss_pred cEEEeeCCCCceeeeeEecCCCCcEEEEEe
Q 044557 297 TIRIWRGIDRNYTCLAVLEGHRGPVKCLAA 326 (362)
Q Consensus 297 ~i~~W~~~~~~~~~~~~l~~h~~~v~~~~~ 326 (362)
.+..++...........+. ...|.++..
T Consensus 212 Gl~~~~~~~~~~~~~~~l~--~~~i~~i~~ 239 (758)
T 3ott_A 212 YLFQYFPSTGQIKQTEAFH--NNSIKSLAL 239 (758)
T ss_dssp EEEEEETTTTEEEEEEEEE--EEEEEEEEE
T ss_pred CCeEEcCCCCeEEeccCCC--CCeEEEEEE
Confidence 5777775433333222222 234666554
No 351
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.29 E-value=18 Score=34.69 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=26.0
Q ss_pred cceeeeEecCcEEEEecCCCeEEEeecCCCC
Q 044557 20 SYVSSLALAGKFLYTGSSDNEVRSWDCNTFS 50 (362)
Q Consensus 20 ~~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~ 50 (362)
..|.++.+...+++|-+.|.++|+|++.+..
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTE
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCc
Confidence 4567777778899999999999999998754
No 352
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=48.14 E-value=70 Score=30.03 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=38.4
Q ss_pred eeEEEEecCCCEEEEEECC------------CcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEE
Q 044557 145 VSALALTKDETLLYSVSWD------------RTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYT 201 (362)
Q Consensus 145 v~~~~~~~~~~~l~s~s~d------------~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s 201 (362)
.--|+|+|.|++++.-..+ ..+.+.+..+++..+.+......+++.++|+|+++ |+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 4668999999976654322 23555566667665555545567899999999986 443
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.90 E-value=69 Score=32.10 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=26.4
Q ss_pred ceeEEEEecCCCEEEEEcCCCcEEEEeccCC
Q 044557 232 GINALALSCDGSVLYSGACDRSIIVWEKEED 262 (362)
Q Consensus 232 ~v~~i~~s~~~~~l~s~~~d~~i~~wd~~~~ 262 (362)
.+.+++..++..++++-+.|+++|+|++.++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTT
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCC
Confidence 4566777788899999999999999998764
No 354
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=42.90 E-value=82 Score=21.88 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=14.3
Q ss_pred EEEEcCCCcEEEEeCCCeEEEEeCC
Q 044557 190 AVALSDDGDVYTGSADKKIKVWRRS 214 (362)
Q Consensus 190 ~v~~~~~~~~~s~~~dg~i~iw~~~ 214 (362)
.+.+..+|.|+.-..++.+ +|...
T Consensus 60 ~l~l~~dGNLVl~d~~~~~-iW~S~ 83 (113)
T 3mez_B 60 FMRLGHSGELDITDDRLNT-VFVSN 83 (113)
T ss_dssp EEEECTTSCEEEECTTSCE-EEECS
T ss_pred EEEEeCCCcEEEECCCCCE-EEECC
Confidence 4566777776655555554 67543
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=41.83 E-value=2e+02 Score=25.95 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=34.6
Q ss_pred cEEEEEEcCCCc--EEEEeCCCeEEEEeCCCCCCcceee---hhhhc-----cccceeEEEEecC
Q 044557 187 AINAVALSDDGD--VYTGSADKKIKVWRRSPGNKKHSLV---DVLER-----HNSGINALALSCD 241 (362)
Q Consensus 187 ~v~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~-----h~~~v~~i~~s~~ 241 (362)
..+.|+|.|+|. ++.+...|.|++++.........+. ..... .......|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 457899999984 8888899999999753221111111 11111 1346778999996
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=38.78 E-value=1.6e+02 Score=24.20 Aligned_cols=219 Identities=12% Similarity=0.125 Sum_probs=106.3
Q ss_pred ceeeeEecCcEEEEecCCCeEEEeecCCCCcc-cceeeeccceeEEeecceeEEEEEcCceeEEEecCCcEEEEecCCCC
Q 044557 21 YVSSLALAGKFLYTGSSDNEVRSWDCNTFSSE-LDQEFLSNNNIVAVGKGAVKSLVVLADKLFSAHQDHKIRVWKINNQE 99 (362)
Q Consensus 21 ~V~~l~~~~~~l~t~s~Dg~i~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~l~s~~~dg~i~~w~~~~~~ 99 (362)
.|..|+......+.-. ||.|..|-.+..... .+.. ....+..+....+..+... ||.|..|-.+...
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~----------~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAA----------TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDG 92 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGG----------GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTS
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCcc----------CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCC
Confidence 5777777544433335 999999975542211 0000 0123444444444333334 8999999765322
Q ss_pred CCcccceeeeeccCCCchhhhhccccccceeeeeeeeEEeeecCceeEEEEecCCCEEEEEECCCcEEEEECCCceEEEe
Q 044557 100 PDHQKYTRLATLPTLGDRAIKLLMPKNHVQIRRHKTCTWVHHVDAVSALALTKDETLLYSVSWDRTIKIWRTSDFKCLES 179 (362)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 179 (362)
... +|. . -...|..++...+ ..+.-. ||.|..|-....-.+..
T Consensus 93 qlg--------~P~------------~--------------~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~ 135 (282)
T 3qhy_B 93 QTT--------VPA------------E--------------ARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV 135 (282)
T ss_dssp TTC--------CCG------------G--------------GSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC
T ss_pred CCC--------CCc------------c--------------cCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC
Confidence 110 000 0 0123444444332 333334 88888886554221111
Q ss_pred eeccCcccEEEEEEcCCCcEEEEeCCCeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEEec
Q 044557 180 ITNAHDDAINAVALSDDGDVYTGSADKKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVWEK 259 (362)
Q Consensus 180 ~~~~h~~~v~~v~~~~~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~wd~ 259 (362)
. ......|..++--....++ -. ||.|..|-........ .. ..-...|..|+...+ ..++. .||.|..|-.
T Consensus 136 ~-~~~~~~i~~i~~G~~~~~~-l~-~G~v~~wG~n~~gqlg-~p---~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~ 205 (282)
T 3qhy_B 136 P-AEAQSGVTALDGGVYTALA-VK-NGGVIAWGDNYFGQTT-VP---AEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGD 205 (282)
T ss_dssp C-GGGGSSEEEEEECSSEEEE-EE-TTEEEEEECCTTSTTS-CC---GGGGSSEEEEEECSS-EEEEE--ETTEEEEEEC
T ss_pred C-ccCCCCeEEEEcccCEEEE-EE-CCEEEEecCCCCCCCC-Cc---eecCCCeEEEEecCC-EEEEE--ECCeEEEEEC
Confidence 1 1122346666544333333 23 7999999654322211 11 111345666665432 33333 5999999975
Q ss_pred cCCCCcEEEEEeecCccceeEEEEEeCCeEEEeeCCCcEEEeeC
Q 044557 260 EEDDGNILVVGALRGHTKSILCMAVVSDLVCSGSADKTIRIWRG 303 (362)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~s~s~D~~i~~W~~ 303 (362)
.....-. .-..-...|..++-...+.+.-. |+.|..|-.
T Consensus 206 n~~gqlg----~p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~ 244 (282)
T 3qhy_B 206 NRYKQTT----VPTEALSGVSAIASGEWYSLALK-NGKVIAWGS 244 (282)
T ss_dssp CTTSTTC----CCGGGGSSCCEEEECSSCEEEEE-TTEEEEEST
T ss_pred CCCCCCC----CCcccCCCceEEEcCCCEEEEEE-CCEEEEecC
Confidence 4322110 00111234667766555444444 999999953
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.76 E-value=1.8e+02 Score=27.19 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=37.9
Q ss_pred CceeEEEEecCCCEEEEEEC------------CCcEEEEECCCceEEEeeeccCcccEEEEEEcCCCc-EEE
Q 044557 143 DAVSALALTKDETLLYSVSW------------DRTIKIWRTSDFKCLESITNAHDDAINAVALSDDGD-VYT 201 (362)
Q Consensus 143 ~~v~~~~~~~~~~~l~s~s~------------d~~i~iwd~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~s 201 (362)
.....|.|.++|.+.++... ...|..++..+++....+.......++.++|+||++ |+.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV 547 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEE
Confidence 34567899999987763321 125666666666654444323345789999999997 443
No 358
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=30.86 E-value=2.1e+02 Score=26.72 Aligned_cols=58 Identities=10% Similarity=0.263 Sum_probs=35.6
Q ss_pred cEEEEEEcCCCcEEEEeCC-------------CeEEEEeCCCCCCcceeehhhhc-cccceeEEEEecCCCEEEEE
Q 044557 187 AINAVALSDDGDVYTGSAD-------------KKIKVWRRSPGNKKHSLVDVLER-HNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 187 ~v~~v~~~~~~~~~s~~~d-------------g~i~iw~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~~~~~l~s~ 248 (362)
....|+|.++|.|..+... ..|..++..+++. ..+. .. ....++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel-~~fl---~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFM---VGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCE-EEEE---ECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeE-EEEE---eCCCCccccCCEECCCCCEEEEE
Confidence 4677899999986553221 1455555544432 1121 11 13568999999999988866
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=29.31 E-value=2.7e+02 Score=23.89 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=36.4
Q ss_pred cEEEEEEcC---CCcEEEEeCCCeEEEEeCCCCCCcceeehhhhc----------------cccceeEEEEecC-CCEEE
Q 044557 187 AINAVALSD---DGDVYTGSADKKIKVWRRSPGNKKHSLVDVLER----------------HNSGINALALSCD-GSVLY 246 (362)
Q Consensus 187 ~v~~v~~~~---~~~~~s~~~dg~i~iw~~~~~~~~~~~~~~~~~----------------h~~~v~~i~~s~~-~~~l~ 246 (362)
.|.++++.| .+.++.++..+.|... .++....+....... ....+.+|.+.|. ...|+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 477888886 4567777766655443 333222222221111 1235788999883 45556
Q ss_pred EEcCCCcEEE
Q 044557 247 SGACDRSIIV 256 (362)
Q Consensus 247 s~~~d~~i~~ 256 (362)
.+..++.|..
T Consensus 194 vg~~~ggl~~ 203 (394)
T 3b7f_A 194 IGMSSGGVFE 203 (394)
T ss_dssp EEEETBEEEE
T ss_pred EEECCCCEEE
Confidence 5655554443
No 360
>2z5e_A Proteasome assembling chaperone 3; beta sandwich, homodimer; 2.00A {Homo sapiens}
Probab=28.81 E-value=38 Score=24.25 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=34.7
Q ss_pred ccceeccceeeecccCccceeeeEecCcEEEEecCCCeEEEe
Q 044557 3 NLSVVDHHCLTTLKGHNSYVSSLALAGKFLYTGSSDNEVRSW 44 (362)
Q Consensus 3 ~~~~~~~~~~~tl~gH~~~V~~l~~~~~~l~t~s~Dg~i~vW 44 (362)
++-....++..++.|+...|....|+.+.+++.+..|++=-|
T Consensus 4 ~~pv~~kq~s~~I~Gv~Tevv~~~FsD~ilV~VTQ~Gk~Gt~ 45 (122)
T 2z5e_A 4 TPLVISKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTL 45 (122)
T ss_dssp CCSSCEEEEEEEETTEEEEEEEEECSSEEEEEEESTTCCCEE
T ss_pred CCCcceeEEEEEECCeeeEEEEEecCCEEEEEEEeCCeeeEE
Confidence 344566778888999999999999999999999999886444
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=24.84 E-value=2.2e+02 Score=26.71 Aligned_cols=58 Identities=10% Similarity=0.232 Sum_probs=34.8
Q ss_pred EEEEEEcCCCcEEEEeCC-------------CeEEEEeCCCCCCcceeehhhhccccceeEEEEecCCCEEEEE
Q 044557 188 INAVALSDDGDVYTGSAD-------------KKIKVWRRSPGNKKHSLVDVLERHNSGINALALSCDGSVLYSG 248 (362)
Q Consensus 188 v~~v~~~~~~~~~s~~~d-------------g~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~ 248 (362)
.--|+|+|.|.|+.+... ..+.+.+..+++. ..+... .-.+.++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~-~rf~~~--P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVG--PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE-EEEEEC--CTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE-EEEEeC--CCCccCcCeeECCCCCEEEEE
Confidence 467899999986654332 2344444444432 122211 124678999999999888765
No 362
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.65 E-value=2e+02 Score=26.20 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=34.7
Q ss_pred EEEEeCCCeEEEEeCCCCCC----cceeehhhh--ccccceeEEEEecCCCEEEEEcCCCcEEE
Q 044557 199 VYTGSADKKIKVWRRSPGNK----KHSLVDVLE--RHNSGINALALSCDGSVLYSGACDRSIIV 256 (362)
Q Consensus 199 ~~s~~~dg~i~iw~~~~~~~----~~~~~~~~~--~h~~~v~~i~~s~~~~~l~s~~~d~~i~~ 256 (362)
++.|+.+|.|+-.-+..... ...++..+. ....+|..+.+++++.+|+.++.++.+++
T Consensus 424 ~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 424 MFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 56788898765443322110 000111111 23578999999999999999998775554
No 363
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.63 E-value=1.3e+02 Score=27.93 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=39.5
Q ss_pred EEEEEEcCCC--c-EEEEeCCCeEEEEeCCCCCCcceeehhh--hcccccee-EEEEecCCCEEEEEcCCCcEEE
Q 044557 188 INAVALSDDG--D-VYTGSADKKIKVWRRSPGNKKHSLVDVL--ERHNSGIN-ALALSCDGSVLYSGACDRSIIV 256 (362)
Q Consensus 188 v~~v~~~~~~--~-~~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~h~~~v~-~i~~s~~~~~l~s~~~d~~i~~ 256 (362)
.++|+....+ . ++.|+.+|.|.-..+........+...+ .....+|. .+.+++++.+|+.++.++.+++
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4445544322 2 5678899987665443221110111111 12246785 8999999999999987765544
No 364
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=21.09 E-value=2.7e+02 Score=26.14 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=46.7
Q ss_pred EEEEEcCCCc--EEEEeCCCeEEEEeCCCCC---------CcceeehhhhccccceeEEEEecCCCEEEEEcCCCcEEEE
Q 044557 189 NAVALSDDGD--VYTGSADKKIKVWRRSPGN---------KKHSLVDVLERHNSGINALALSCDGSVLYSGACDRSIIVW 257 (362)
Q Consensus 189 ~~v~~~~~~~--~~s~~~dg~i~iw~~~~~~---------~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~~d~~i~~w 257 (362)
..+.++|+|+ ++++-.+.++.++|++... ....+....+ -.......+|.++|....|--.|.+|.-|
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkW 404 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKW 404 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEE
Confidence 4577889998 3456678899999986311 0001111111 23345678899999666677799999999
Q ss_pred eccC
Q 044557 258 EKEE 261 (362)
Q Consensus 258 d~~~ 261 (362)
++..
T Consensus 405 ni~~ 408 (638)
T 3sbq_A 405 NMEE 408 (638)
T ss_dssp EHHH
T ss_pred eccH
Confidence 9753
No 365
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=20.32 E-value=1.8e+02 Score=26.79 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=35.7
Q ss_pred EEEEeCCCeEEEEeCCCCCC--cceeehhhhccccce-eEEEEecCCCEEEEEcCCCcEEEE
Q 044557 199 VYTGSADKKIKVWRRSPGNK--KHSLVDVLERHNSGI-NALALSCDGSVLYSGACDRSIIVW 257 (362)
Q Consensus 199 ~~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~h~~~v-~~i~~s~~~~~l~s~~~d~~i~~w 257 (362)
++.|+.+|.|+-.-+..... ....+. + ....+| ..+.++++..+|+.++.++.+++-
T Consensus 403 ~FlGT~~G~l~Kv~~~~~~~~~~~ee~~-v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 403 AFLGDSQGQLHRVYLGPGSDGHPYSTQS-I-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp EEEEETTSEEEEEECSSSCCSCCSEEEE-S-STTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred EEEECCCCeEEEEEEcCCCCeeEEeeec-c-CCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 55788999886554432111 111111 1 234577 489999999999999888766654
Done!