BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044558
         (197 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GP0|A Chain A, The Crystal Structure Of Human Fascin 1 R149a K150a
          R151a Mutant
 pdb|4GP0|B Chain B, The Crystal Structure Of Human Fascin 1 R149a K150a
          R151a Mutant
          Length = 493

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/17 (70%), Positives = 14/17 (82%)

Query: 9  AVRLRSHLGKYLVANDD 25
          AV LRSHLG+YL A+ D
Sbjct: 59 AVCLRSHLGRYLAADKD 75


>pdb|4GOV|A Chain A, The Crystal Structure Of Human Fascin 1 S39d Mutant
 pdb|4GOV|B Chain B, The Crystal Structure Of Human Fascin 1 S39d Mutant
          Length = 493

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/17 (70%), Positives = 14/17 (82%)

Query: 9  AVRLRSHLGKYLVANDD 25
          AV LRSHLG+YL A+ D
Sbjct: 59 AVCLRSHLGRYLAADKD 75


>pdb|1DFC|A Chain A, Crystal Structure Of Human Fascin, An Actin-Crosslinking
          Protein
 pdb|1DFC|B Chain B, Crystal Structure Of Human Fascin, An Actin-Crosslinking
          Protein
 pdb|3LLP|A Chain A, 1.8 Angstrom Human Fascin 1 Crystal Structure
 pdb|3LLP|B Chain B, 1.8 Angstrom Human Fascin 1 Crystal Structure
          Length = 493

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/17 (70%), Positives = 14/17 (82%)

Query: 9  AVRLRSHLGKYLVANDD 25
          AV LRSHLG+YL A+ D
Sbjct: 59 AVCLRSHLGRYLAADKD 75


>pdb|4GP3|A Chain A, The Crystal Structure Of Human Fascin 1 K358a Mutant
 pdb|4GP3|B Chain B, The Crystal Structure Of Human Fascin 1 K358a Mutant
          Length = 493

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/17 (70%), Positives = 14/17 (82%)

Query: 9  AVRLRSHLGKYLVANDD 25
          AV LRSHLG+YL A+ D
Sbjct: 59 AVCLRSHLGRYLAADKD 75


>pdb|4GOY|A Chain A, The Crystal Structure Of Human Fascin 1 K41a Mutant
 pdb|4GOY|B Chain B, The Crystal Structure Of Human Fascin 1 K41a Mutant
          Length = 493

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/17 (70%), Positives = 14/17 (82%)

Query: 9  AVRLRSHLGKYLVANDD 25
          AV LRSHLG+YL A+ D
Sbjct: 59 AVCLRSHLGRYLAADKD 75


>pdb|3P53|A Chain A, Structure Of Fascin
 pdb|3P53|B Chain B, Structure Of Fascin
          Length = 496

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/17 (70%), Positives = 14/17 (82%)

Query: 9  AVRLRSHLGKYLVANDD 25
          AV LRSHLG+YL A+ D
Sbjct: 62 AVCLRSHLGRYLAADKD 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,524,471
Number of Sequences: 62578
Number of extensions: 200610
Number of successful extensions: 383
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 8
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)