BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044558
         (197 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6LMG3|SECA_PHOPR Protein translocase subunit SecA OS=Photobacterium profundum
           GN=secA PE=3 SV=1
          Length = 910

 Score = 33.5 bits (75), Expect = 0.86,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 12/115 (10%)

Query: 6   KAKAVRLRSHLGKY----LVANDDEETVRQSRKGSSSEARWTVEF----VQDNCHLIRLK 57
           KAK V  R  L +     L+  +   TVR++ K       + V+     V +NC +  ++
Sbjct: 44  KAKTVEFRERLDQGESLDLLLPEAFATVREASKRVFGMRHFDVQLLGGMVLNNCQIAEMR 103

Query: 58  SCYNKYLTASEEPFLSGLTGKKV----VQTSTSASSSENSDRCIEWEPVTSGFEV 108
           +   K LTA+   +L+ LTGK V    V    +A  +E +    E+  +T G  V
Sbjct: 104 TGEGKTLTATLPAYLNALTGKGVHIVTVNDYLAARDAETNRALFEFLGMTVGINV 158


>sp|O84874|GLGB_CHLTR 1,4-alpha-glucan branching enzyme GlgB OS=Chlamydia trachomatis
           (strain D/UW-3/Cx) GN=glgB PE=3 SV=1
          Length = 738

 Score = 30.4 bits (67), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 96  CIEWEPVTSGFEVKFRTRD-GKFLRANGGTPPWRNSITHDVPHRTATQDWV 145
           C +WE VT   +V  ++   GKF     G PPW  S+  D  +     +W+
Sbjct: 182 CYKWEMVTESGQVLIKSDPYGKFF----GPPPWSVSVVIDDSYEWTDSEWL 228


>sp|Q00293|PGLRX_ASPTU Exopolygalacturonase X OS=Aspergillus tubingensis GN=pgaX PE=1 SV=1
          Length = 435

 Score = 30.4 bits (67), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 118 LRANGGTPPWRNSITHDVPHRTATQDWVLWGVDIVDILDFESLSNCESFASSLSNCSSHS 177
           L+  GG+   +N IT+D    TA  D V W ++I      ++ + C  + SSL+    H 
Sbjct: 317 LQGGGGSGSVKN-ITYD----TALIDNVDWAIEITQCYGQKNTTLCNEYPSSLTISDVHI 371

Query: 178 EDFARSDSGS 187
           ++F  + SGS
Sbjct: 372 KNFRGTTSGS 381


>sp|Q27UB3|PGLRX_ASPNG Exopolygalacturonase X OS=Aspergillus niger GN=pgaX PE=3 SV=1
          Length = 435

 Score = 30.4 bits (67), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 118 LRANGGTPPWRNSITHDVPHRTATQDWVLWGVDIVDILDFESLSNCESFASSLSNCSSHS 177
           L+  GG+   +N IT+D    TA  D V W ++I      ++ + C  + SSL+    H 
Sbjct: 317 LQGGGGSGSVKN-ITYD----TALIDNVDWAIEITQCYGQKNTTLCNEYPSSLTISDVHI 371

Query: 178 EDFARSDSGS 187
           ++F  + SGS
Sbjct: 372 KNFRGTTSGS 381


>sp|A2R060|PGLRX_ASPNC Probable exopolygalacturonase X OS=Aspergillus niger (strain CBS
           513.88 / FGSC A1513) GN=pgaX PE=3 SV=1
          Length = 435

 Score = 30.4 bits (67), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 118 LRANGGTPPWRNSITHDVPHRTATQDWVLWGVDIVDILDFESLSNCESFASSLSNCSSHS 177
           L+  GG+   +N IT+D    TA  D V W ++I      ++ + C  + SSL+    H 
Sbjct: 317 LQGGGGSGSVKN-ITYD----TALIDNVDWAIEITQCYGQKNTTLCNEYPSSLTISDVHI 371

Query: 178 EDFARSDSGS 187
           ++F  + SGS
Sbjct: 372 KNFRGTTSGS 381


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.127    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,995,165
Number of Sequences: 539616
Number of extensions: 2644844
Number of successful extensions: 6616
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6615
Number of HSP's gapped (non-prelim): 9
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)