Query 044558
Match_columns 197
No_of_seqs 129 out of 190
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:27:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04601 DUF569: Protein of un 100.0 2.3E-61 5E-66 389.0 16.2 142 1-147 1-142 (142)
2 cd00257 Fascin Fascin-like dom 99.3 8.4E-11 1.8E-15 89.7 11.2 97 9-122 3-100 (119)
3 PF06268 Fascin: Fascin domain 98.8 8.3E-09 1.8E-13 78.8 4.5 57 6-66 34-90 (111)
4 cd00257 Fascin Fascin-like dom 98.6 1.1E-07 2.4E-12 72.4 7.4 58 7-68 43-100 (119)
5 PF04601 DUF569: Protein of un 98.6 1.5E-07 3.2E-12 76.5 7.8 84 7-99 51-142 (142)
6 PF06268 Fascin: Fascin domain 98.2 1.3E-05 2.7E-10 61.2 8.5 90 17-121 2-91 (111)
7 PF06229 FRG1: FRG1-like famil 97.9 2.4E-05 5.3E-10 66.3 6.4 61 6-70 37-98 (191)
8 PF06229 FRG1: FRG1-like famil 97.7 0.0002 4.4E-09 60.7 8.0 90 18-122 2-96 (191)
9 PF00167 FGF: Fibroblast growt 97.0 0.0024 5.3E-08 49.4 6.4 58 9-69 2-60 (122)
10 KOG3962 Predicted actin-bundli 96.6 0.0042 9E-08 54.4 5.7 97 9-123 49-151 (246)
11 cd00058 FGF Acidic and basic f 96.2 0.01 2.2E-07 46.8 5.3 56 12-70 3-59 (123)
12 smart00442 FGF Acidic and basi 96.2 0.015 3.3E-07 46.0 6.0 60 8-70 3-63 (126)
13 PF14200 RicinB_lectin_2: Rici 95.4 0.31 6.6E-06 36.1 10.3 76 39-123 2-80 (105)
14 PF00167 FGF: Fibroblast growt 94.6 0.15 3.3E-06 39.3 6.8 59 8-70 42-104 (122)
15 smart00472 MIR Domain in ryano 93.7 0.25 5.3E-06 32.8 5.5 42 5-46 5-56 (57)
16 KOG3359 Dolichyl-phosphate-man 93.2 3.4 7.4E-05 41.7 14.8 140 7-155 317-502 (723)
17 smart00791 Agglutinin Amaranth 92.8 1.8 3.9E-05 35.3 10.2 98 9-121 7-112 (139)
18 cd00058 FGF Acidic and basic f 92.6 0.51 1.1E-05 37.1 6.7 61 6-70 38-102 (123)
19 PF07468 Agglutinin: Agglutini 92.1 4.2 9.1E-05 33.7 11.6 118 9-134 7-137 (153)
20 PF05270 AbfB: Alpha-L-arabino 91.3 0.51 1.1E-05 38.4 5.4 100 9-122 2-117 (142)
21 PF14200 RicinB_lectin_2: Rici 90.7 1.7 3.7E-05 32.0 7.4 74 7-85 14-93 (105)
22 smart00791 Agglutinin Amaranth 90.3 1.4 3.1E-05 35.9 7.1 84 53-150 7-92 (139)
23 smart00472 MIR Domain in ryano 89.4 1.3 2.8E-05 29.3 5.3 49 102-152 4-57 (57)
24 smart00442 FGF Acidic and basi 89.3 1.1 2.4E-05 35.3 5.7 59 8-70 44-106 (126)
25 COG1928 PMT1 Dolichyl-phosphat 88.7 2 4.4E-05 43.2 8.2 96 1-103 360-478 (699)
26 KOG3885 Fibroblast growth fact 83.3 2.9 6.3E-05 34.7 5.3 58 14-74 32-91 (155)
27 KOG3359 Dolichyl-phosphate-man 80.9 9.7 0.00021 38.6 8.9 96 2-103 379-498 (723)
28 KOG3885 Fibroblast growth fact 72.5 9.6 0.00021 31.6 5.4 62 8-73 68-135 (155)
29 KOG3358 Uncharacterized secret 71.4 35 0.00076 29.4 8.6 110 7-123 38-166 (211)
30 PF02815 MIR: MIR domain; Int 70.7 14 0.0003 30.3 6.0 91 37-128 45-163 (190)
31 KOG3962 Predicted actin-bundli 67.5 4.7 0.0001 35.6 2.6 54 8-64 94-148 (246)
32 KOG3533 Inositol 1,4,5-trispho 59.0 14 0.00031 40.5 4.6 67 4-70 241-327 (2706)
33 PF05270 AbfB: Alpha-L-arabino 56.5 21 0.00047 28.9 4.5 62 6-69 49-118 (142)
34 TIGR03299 LGT_TIGR03299 phage/ 52.7 9.8 0.00021 34.7 2.1 40 145-193 33-74 (309)
35 PF02815 MIR: MIR domain; Int 52.5 22 0.00048 29.1 4.1 67 6-72 67-160 (190)
36 COG1928 PMT1 Dolichyl-phosphat 49.5 1.9E+02 0.0042 29.5 10.6 137 8-155 306-482 (699)
37 PF03498 CDtoxinA: Cytolethal 45.8 47 0.001 27.2 4.9 64 4-70 48-114 (150)
38 PF07468 Agglutinin: Agglutini 43.4 74 0.0016 26.4 5.7 71 52-130 6-80 (153)
39 cd00161 RICIN Ricin-type beta- 38.8 1.3E+02 0.0029 20.9 11.9 96 11-123 2-102 (124)
40 PF08709 Ins145_P3_rec: Inosit 30.0 72 0.0016 27.0 3.8 61 7-67 101-180 (214)
No 1
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=100.00 E-value=2.3e-61 Score=389.01 Aligned_cols=142 Identities=61% Similarity=1.046 Sum_probs=137.9
Q ss_pred CCCCCCCCEEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEeccCCCCcccCCCCCCCCCCCcceE
Q 044558 1 MEFFNKAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKV 80 (197)
Q Consensus 1 ME~F~d~~~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~LqsayGRYL~as~~~~~~G~~g~~v 80 (197)
||+|+|++||||||++||||+|||||++|+|+++++++||+|+||+++++.++|+|||||||||+||+.+|++|++|++|
T Consensus 1 Me~F~d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v 80 (142)
T PF04601_consen 1 MEFFPDGKHVRLRSHHGKYLHADEDGEGVSQDRRGASLNAAWTVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRV 80 (142)
T ss_pred CCccCCCCEEEEEecCCCEEEEcCCCCeEEECCCCCCCcceEEEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCCEE
Confidence 99999999999999999999999999999999999999999999999776799999999999999999999999999999
Q ss_pred EeecCCCCCCCCCCCCceeeEeecCCEEEEEcCCCceeccCCCCCCCcceEEEeCCCCCcccCeEeE
Q 044558 81 VQTSTSASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRANGGTPPWRNSITHDVPHRTATQDWVLW 147 (197)
Q Consensus 81 vq~~~~~~~~~~~d~~i~W~~~~~g~~v~Lr~~~gryLRANG~~~pwr~~VTvD~~~~~~~~~~~~W 147 (197)
+|+++++ .|..+||+|+++|++|+||+++||||||||+++||||+||||+|++++|++||+|
T Consensus 81 ~Q~~~~~-----~d~~~~Wepvr~g~~V~Lr~~~gr~LRANG~~~~Wrn~VT~D~~~~s~~~~wv~w 142 (142)
T PF04601_consen 81 VQTDPDR-----LDSSVEWEPVRDGFYVKLRHRSGRYLRANGGYPPWRNSVTVDVPHRSATQDWVLW 142 (142)
T ss_pred EecCCcc-----CCCCceEEEecCCCEEEEEecCCceEEcCCCCCCCcceEEecCCCCCeEEEEEEC
Confidence 9999877 6889999999999999999999999999999999999999999999999999988
No 2
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.26 E-value=8.4e-11 Score=89.72 Aligned_cols=97 Identities=27% Similarity=0.379 Sum_probs=73.3
Q ss_pred EEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEeccCCCCcccCCCCCCCCCCCcceEEeecCCCC
Q 044558 9 AVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKVVQTSTSAS 88 (197)
Q Consensus 9 ~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~LqsayGRYL~as~~~~~~G~~g~~vvq~~~~~~ 88 (197)
.|.|||+.||||.|.++|..|.+.+........|.++.. +++.|.||++.||||++.++. . +..+.+.
T Consensus 3 ~v~Lrs~~gkyl~~~~~g~~v~a~~~~~~~~e~F~l~~~--~~g~v~Lrs~~G~yls~~~~g-------~--l~~~~~~- 70 (119)
T cd00257 3 QVVLRSVNGRYLSAEAGGDKVDANRDSLKGDETFTLEFD--NTGKYALRSHDGKYLSADSDG-------G--VQLEGHP- 70 (119)
T ss_pred EEEEEEcCCCEEEEeccCCEEEEcCccCCCceEEEEEEC--CCCeEEEEECCCcEEEEECCC-------C--EEecCCC-
Confidence 589999999999999999668888887777789999885 478999999999999986533 1 1222111
Q ss_pred CCCCCCCCceeeEeec-CCEEEEEcCCCceeccCC
Q 044558 89 SSENSDRCIEWEPVTS-GFEVKFRTRDGKFLRANG 122 (197)
Q Consensus 89 ~~~~~d~~i~W~~~~~-g~~v~Lr~~~gryLRANG 122 (197)
...-.|.+... ++.+.||..+|+||.++.
T Consensus 71 -----~~~e~F~~e~~~~g~~al~~~~G~yl~~~~ 100 (119)
T cd00257 71 -----NADCRFTLEFHGDGKWALRAENGRYLGGDG 100 (119)
T ss_pred -----CCCcEEEEEECCCCeEEEEcCCCCEEeecC
Confidence 22233555443 479999999999999974
No 3
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=98.77 E-value=8.3e-09 Score=78.81 Aligned_cols=57 Identities=30% Similarity=0.468 Sum_probs=51.2
Q ss_pred CCCEEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEeccCCCCcccC
Q 044558 6 KAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTA 66 (197)
Q Consensus 6 d~~~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~LqsayGRYL~a 66 (197)
+...|.||++.||||.+|.|| .|.++.+..+.++.|.++.. ++.++|+.++||||++
T Consensus 34 ~~~~v~lrs~~GkYls~~~~G-~v~~~~~~~~~~~~F~i~~~---~~~~~~~~~nGkYl~~ 90 (111)
T PF06268_consen 34 GSYKVALRSHNGKYLSVDSDG-SVVADSETPGPDEFFEIEWH---GGKVALRASNGKYLSA 90 (111)
T ss_dssp TEEEEEEECTTSEEEEEETTS-EEEEEESSSSGGGCBEEEEE---TTEEEEECTTSCEEEE
T ss_pred CCCEEEEEcCCCCEEEEcCCC-eEEecCCCCCCCcEEEEEEC---CCEEEEECCCCCEEee
Confidence 456789999999999999999 59999998889999999985 7889999899999995
No 4
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=98.64 E-value=1.1e-07 Score=72.44 Aligned_cols=58 Identities=31% Similarity=0.446 Sum_probs=51.6
Q ss_pred CCEEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEeccCCCCcccCCC
Q 044558 7 AKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASE 68 (197)
Q Consensus 7 ~~~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~LqsayGRYL~as~ 68 (197)
...|.||++.|+||.+++|| .|+...+ ......|.+|.. +++.|.||+.+|+||++..
T Consensus 43 ~g~v~Lrs~~G~yls~~~~g-~l~~~~~-~~~~e~F~~e~~--~~g~~al~~~~G~yl~~~~ 100 (119)
T cd00257 43 TGKYALRSHDGKYLSADSDG-GVQLEGH-PNADCRFTLEFH--GDGKWALRAENGRYLGGDG 100 (119)
T ss_pred CCeEEEEECCCcEEEEECCC-CEEecCC-CCCCcEEEEEEC--CCCeEEEEcCCCCEEeecC
Confidence 56789999999999999999 5999888 788899999984 5689999999999999964
No 5
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=98.61 E-value=1.5e-07 Score=76.51 Aligned_cols=84 Identities=24% Similarity=0.356 Sum_probs=58.7
Q ss_pred CCEEEEeecCCCeEEEeCC-------CCcEEEeC-CCCCCCCceEEEEEecCCCeEEeccCCCCcccCCCCCCCCCCCcc
Q 044558 7 AKAVRLRSHLGKYLVANDD-------EETVRQSR-KGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGK 78 (197)
Q Consensus 7 ~~~VrLRS~~gkYL~ADeD-------G~~Vs~~~-~~~s~na~W~Ve~~~~~~~~v~LqsayGRYL~as~~~~~~G~~g~ 78 (197)
..+|+|||++|+||.|-+. |++|.|.. .......-|.... ++.+|+|++.+||||-|..-..+.- .
T Consensus 51 ~~~v~L~saYGrYL~as~~~~~lG~~G~~v~Q~~~~~~d~~~~Wepvr---~g~~V~Lr~~~gr~LRANG~~~~Wr---n 124 (142)
T PF04601_consen 51 PNYVRLRSAYGRYLAASDEPALLGHTGRRVVQTDPDRLDSSVEWEPVR---DGFYVKLRHRSGRYLRANGGYPPWR---N 124 (142)
T ss_pred CCEEEEeeccCceEeccCCcCCCCCCCCEEEecCCccCCCCceEEEec---CCCEEEEEecCCceEEcCCCCCCCc---c
Confidence 5799999999999999876 57788875 3334456776543 5789999999999999988765542 2
Q ss_pred eEEeecCCCCCCCCCCCCcee
Q 044558 79 KVVQTSTSASSSENSDRCIEW 99 (197)
Q Consensus 79 ~vvq~~~~~~~~~~~d~~i~W 99 (197)
.|++-.+.. ..+...|.|
T Consensus 125 ~VT~D~~~~---s~~~~wv~w 142 (142)
T PF04601_consen 125 SVTVDVPHR---SATQDWVLW 142 (142)
T ss_pred eEEecCCCC---CeEEEEEEC
Confidence 344443332 124455555
No 6
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=98.17 E-value=1.3e-05 Score=61.22 Aligned_cols=90 Identities=24% Similarity=0.324 Sum_probs=67.3
Q ss_pred CCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEeccCCCCcccCCCCCCCCCCCcceEEeecCCCCCCCCCCCC
Q 044558 17 GKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKVVQTSTSASSSENSDRC 96 (197)
Q Consensus 17 gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~LqsayGRYL~as~~~~~~G~~g~~vvq~~~~~~~~~~~d~~ 96 (197)
++|+.+..-|..|.+.+...+....|+++.. .+...|.||+..|+||.+..+- . +..+.+. .+..
T Consensus 2 ~~~~~~~k~~~~l~an~~~~~~~e~f~le~~-~~~~~v~lrs~~GkYls~~~~G-------~--v~~~~~~-----~~~~ 66 (111)
T PF06268_consen 2 NGYLVSEKFGAHLNANRASLSDWETFQLEFD-DGSYKVALRSHNGKYLSVDSDG-------S--VVADSET-----PGPD 66 (111)
T ss_dssp TEEEEETTCTCBEEEEESSSSCGGSEEEEEE-TTEEEEEEECTTSEEEEEETTS-------E--EEEEESS-----SSGG
T ss_pred CcEEEEEEcCCEEECChhcCcccEEEEEEEE-CCCCEEEEEcCCCCEEEEcCCC-------e--EEecCCC-----CCCC
Confidence 5799999999999999877777889999974 2236778999999999975433 2 2222222 2455
Q ss_pred ceeeEeecCCEEEEEcCCCceeccC
Q 044558 97 IEWEPVTSGFEVKFRTRDGKFLRAN 121 (197)
Q Consensus 97 i~W~~~~~g~~v~Lr~~~gryLRAN 121 (197)
..|+....++.+.|+..+||||.+.
T Consensus 67 ~~F~i~~~~~~~~~~~~nGkYl~~~ 91 (111)
T PF06268_consen 67 EFFEIEWHGGKVALRASNGKYLSAG 91 (111)
T ss_dssp GCBEEEEETTEEEEECTTSCEEEEE
T ss_pred cEEEEEECCCEEEEECCCCCEEeeC
Confidence 5566666689999999999999854
No 7
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=97.92 E-value=2.4e-05 Score=66.30 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=41.1
Q ss_pred CCCEEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CCCCcccCCCCC
Q 044558 6 KAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CYNKYLTASEEP 70 (197)
Q Consensus 6 d~~~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ayGRYL~as~~~ 70 (197)
+...|.|||++||||.+|++| .|+..++.-++...|.+.. .++...+.+ ++++||...+..
T Consensus 37 ~~~~iafKs~~GkYLs~Dk~G-~v~a~sdAiGp~E~f~~V~---~~~~~a~~~~~~~~FLs~~~~~ 98 (191)
T PF06229_consen 37 GDEKIAFKSGHGKYLSCDKDG-IVSARSDAIGPQEQFEPVF---QDGKPALFSSSNNKFLSVDEEG 98 (191)
T ss_dssp SSS-EEEEETTS-BEEE-SSS-BEEE--SS--TTTBEEEE----STT--EEEE-TTS-BEEE-SSS
T ss_pred CCCceEeeccCccEEEEcCCC-cEEEEeecCCCceEEEEEE---CCCCeEEEecCCCeEEEEeccc
Confidence 456799999999999999999 5999999889999999965 345555555 999999998844
No 8
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=97.66 E-value=0.0002 Score=60.70 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=48.2
Q ss_pred CeEEEeCCCCcEEEeC----CCCCCCCceEEEEEecCCCeEEeccCCCCcccCCCCCCCCCCCcceEEeecCCCCCCCCC
Q 044558 18 KYLVANDDEETVRQSR----KGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKVVQTSTSASSSENS 93 (197)
Q Consensus 18 kYL~ADeDG~~Vs~~~----~~~s~na~W~Ve~~~~~~~~v~LqsayGRYL~as~~~~~~G~~g~~vvq~~~~~~~~~~~ 93 (197)
.||.|=+||.-.+-.+ +++++.-+|+.-.++ ++..|.|||.|||||++... |.-+...+. .
T Consensus 2 syi~a~d~G~~t~~ePhd~~~~p~p~qV~va~~v~-~~~~iafKs~~GkYLs~Dk~-------G~v~a~sdA-------i 66 (191)
T PF06229_consen 2 SYIEALDNGLFTTGEPHDVGEGPDPRQVWVATRVP-GDEKIAFKSGHGKYLSCDKD-------GIVSARSDA-------I 66 (191)
T ss_dssp -BEEE-TTS-EEE----SSS----TTT-EEEEE---SSS-EEEEETTS-BEEE-SS-------SBEEE--SS--------
T ss_pred ceeeeeccCCccccCCCcCCCCCChhHeEEEEEec-CCCceEeeccCccEEEEcCC-------CcEEEEeec-------C
Confidence 5999999996333333 356778899999885 45789999999999998643 333333332 1
Q ss_pred CCCceeeEeecCCEEEEEc-CCCceeccCC
Q 044558 94 DRCIEWEPVTSGFEVKFRT-RDGKFLRANG 122 (197)
Q Consensus 94 d~~i~W~~~~~g~~v~Lr~-~~gryLRANG 122 (197)
-..=.|+|+..++...+.. .+++||..+.
T Consensus 67 Gp~E~f~~V~~~~~~a~~~~~~~~FLs~~~ 96 (191)
T PF06229_consen 67 GPQEQFEPVFQDGKPALFSSSNNKFLSVDE 96 (191)
T ss_dssp -TTTBEEEE-STT--EEEE-TTS-BEEE-S
T ss_pred CCceEEEEEECCCCeEEEecCCCeEEEEec
Confidence 1222499998766666655 8999998876
No 9
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=96.99 E-value=0.0024 Score=49.42 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=50.8
Q ss_pred EEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CCCCcccCCCC
Q 044558 9 AVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CYNKYLTASEE 69 (197)
Q Consensus 9 ~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ayGRYL~as~~ 69 (197)
.++|=++.|+||...+|| .|....+..+.++.|.|+.+ +.+.|+|++ ..++||+-...
T Consensus 2 ~~~Ly~~~~~~L~i~~~g-~V~gt~~~~~~~s~~~i~~~--~~g~V~i~~~~s~~YLcmn~~ 60 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNG-TVDGTGDDNSPYSVFEIHSV--GFGVVRIRGVKSCRYLCMNKC 60 (122)
T ss_dssp EEEEEETTSEEEEEETTS-BEEEESSTTSTTGEEEEEEE--ETTEEEEEETTTTEEEEEBTT
T ss_pred CEEEEECCCeEEEECCCC-eEeCCCCcCcceeEEEEEec--cceEEEEEEecceEEEEECCC
Confidence 577888889999999999 69999988899999999997 348999999 79999988653
No 10
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=96.62 E-value=0.0042 Score=54.35 Aligned_cols=97 Identities=26% Similarity=0.369 Sum_probs=63.4
Q ss_pred EEEEeecCCCeEEEeCCCCcEEEe-C----CCCCCCC-ceEEEEEecCCCeEEeccCCCCcccCCCCCCCCCCCcceEEe
Q 044558 9 AVRLRSHLGKYLVANDDEETVRQS-R----KGSSSEA-RWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKVVQ 82 (197)
Q Consensus 9 ~VrLRS~~gkYL~ADeDG~~Vs~~-~----~~~s~na-~W~Ve~~~~~~~~v~LqsayGRYL~as~~~~~~G~~g~~vvq 82 (197)
+|-+.---|+||+|-++|. -++. + .++.+.. .++|-+ .+.+|+|+|.||+||+-+.+...-|..
T Consensus 49 ~v~ie~~~~~yl~a~dng~-ft~g~ph~~~~gp~p~e~f~avki---~dsrIaLKsGyGKYlsinsdglvvg~q------ 118 (246)
T KOG3962|consen 49 TVAIEIDDGTYLGAMDNGL-FTLGAPHDEVDGPEPEEQFMAVKI---SDSRIALKSGYGKYLSINSDGLVVGRQ------ 118 (246)
T ss_pred EEEEEecCceEEEEEecCc-eeeccCCccccCCCchhhEEEEEc---cCceEEecccccceeeecCCccEEEeh------
Confidence 5555555589999999996 4433 3 2333333 445554 469999999999999998776333211
Q ss_pred ecCCCCCCCCCCCCceeeEeecCCEEEEEcCCCceeccCCC
Q 044558 83 TSTSASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRANGG 123 (197)
Q Consensus 83 ~~~~~~~~~~~d~~i~W~~~~~g~~v~Lr~~~gryLRANG~ 123 (197)
+ ...+-=.|+|+..++.--|...++.|.+.|.+
T Consensus 119 ----e----AvG~~EQw~~vFq~~r~a~~as~s~~~~~~e~ 151 (246)
T KOG3962|consen 119 ----E----AVGSREQWEPVFQEGRMALLASNSCFIRCNEA 151 (246)
T ss_pred ----h----hcCcHhhchhhhhccceEEeeccceeEEechh
Confidence 0 12334458888877766666677777777654
No 11
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=96.22 E-value=0.01 Score=46.78 Aligned_cols=56 Identities=25% Similarity=0.185 Sum_probs=47.2
Q ss_pred EeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CCCCcccCCCCC
Q 044558 12 LRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CYNKYLTASEEP 70 (197)
Q Consensus 12 LRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ayGRYL~as~~~ 70 (197)
|=++.+.||.-++|| .|...++..+..+.|.++.+ +.+.|+||+ +.++||+-...-
T Consensus 3 Ly~~~~~~L~I~~dG-~V~Gt~~~~~~~s~l~~~s~--~~g~v~i~~v~s~~YLCmn~~G 59 (123)
T cd00058 3 LYCRTGFHLQILPDG-TVDGTRDDSSSYTILERIAV--AVGVVSIKGVASCRYLCMNKCG 59 (123)
T ss_pred EEEcCCeEEEEcCCC-cEecccCCCCCCceEEEEEC--CCCEEEEEEcccceEEEECCCC
Confidence 334448999999999 49999888889999999986 579999999 799999987543
No 12
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=96.17 E-value=0.015 Score=45.96 Aligned_cols=60 Identities=23% Similarity=0.210 Sum_probs=50.9
Q ss_pred CEEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CCCCcccCCCCC
Q 044558 8 KAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CYNKYLTASEEP 70 (197)
Q Consensus 8 ~~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ayGRYL~as~~~ 70 (197)
..++|=++.|.||.-+.|| .|.-..+..+..+.|.++.+ +.+.|+||+ +.++||+-...-
T Consensus 3 R~~~Ly~~~~~~L~I~~~G-~V~Gt~~~~~~~~ile~~s~--~~g~V~ik~~~s~~YLCmn~~G 63 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDG-TVDGTRDESSSFTILEIIAV--AVGVVAIKGVASCRYLCMNKCG 63 (126)
T ss_pred eEEEEEeCCCeEEEEcCCc-eEecccCCCCcceEEEEEec--cCCEEEEEEcccceEEEECCCC
Confidence 4667778888999999999 58888887788999999986 458999999 899999986644
No 13
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=95.45 E-value=0.31 Score=36.08 Aligned_cols=76 Identities=24% Similarity=0.409 Sum_probs=56.6
Q ss_pred CCceEEEEEecCCCeEEecc-CCCCcccCCCCCCCCCCCcceEEeecCCCCCCCCCCCCceeeEeecC-CEEEEEcC-CC
Q 044558 39 EARWTVEFVQDNCHLIRLKS-CYNKYLTASEEPFLSGLTGKKVVQTSTSASSSENSDRCIEWEPVTSG-FEVKFRTR-DG 115 (197)
Q Consensus 39 na~W~Ve~~~~~~~~v~Lqs-ayGRYL~as~~~~~~G~~g~~vvq~~~~~~~~~~~d~~i~W~~~~~g-~~v~Lr~~-~g 115 (197)
|-.|.+..+...+++..|++ +.|+||....... ..|..++|-.+.. .++-.|.....+ +.|.|+.. +|
T Consensus 2 nQ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~---~~g~~v~~~~~~~------~~~Q~W~i~~~~~g~y~I~n~~s~ 72 (105)
T PF14200_consen 2 NQQWTFTPVGDSDGYYKIRNVNSGKYLDVAGGST---ANGTNVQQWTCNG------NDNQQWKIEPVGDGYYRIRNKNSG 72 (105)
T ss_dssp GGEEEEEEEETTTTEEEEEETTTTEEEEEGCTTC---STTEBEEEEESSS------SGGGEEEEEESTTSEEEEEETSTT
T ss_pred CCEEEEEEecCCCCEEEEEECCCCCEEEeCCCCc---CCCcEEEEecCCC------CcCcEEEEEEecCCeEEEEECCCC
Confidence 55899999855578999999 8999999876442 2356787777644 577789998864 67888876 47
Q ss_pred ceeccCCC
Q 044558 116 KFLRANGG 123 (197)
Q Consensus 116 ryLRANG~ 123 (197)
++|=..|.
T Consensus 73 ~~Ldv~~~ 80 (105)
T PF14200_consen 73 KVLDVAGG 80 (105)
T ss_dssp EEEEEGGG
T ss_pred cEEEECCC
Confidence 88866543
No 14
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=94.61 E-value=0.15 Score=39.33 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=48.8
Q ss_pred CEEEEeec-CCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CC--CCcccCCCCC
Q 044558 8 KAVRLRSH-LGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CY--NKYLTASEEP 70 (197)
Q Consensus 8 ~~VrLRS~-~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ay--GRYL~as~~~ 70 (197)
..|+||+. .++||+-|++|+ |+-+..... +|.|..+.. ++.+..+.| .| +.||+-...-
T Consensus 42 g~V~i~~~~s~~YLcmn~~G~-ly~~~~~~~-~C~F~e~~~--~n~y~~~~s~~~~~~~yla~~~~G 104 (122)
T PF00167_consen 42 GVVRIRGVKSCRYLCMNKCGR-LYGSKNFNK-DCVFREELL--ENGYNTYESAKYGRGWYLAFNRRG 104 (122)
T ss_dssp TEEEEEETTTTEEEEEBTTSB-EEEESSBTG-GGEEEEEEE--TTSEEEEEESTTGTTEBCEBCTTS
T ss_pred eEEEEEEecceEEEEECCCCe-EccccccCC-CceEEEEEc--cCCEEEEEeccCCccEEEEECCCC
Confidence 48999996 899999999995 888766555 999998774 678999999 45 9999987654
No 15
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=93.67 E-value=0.25 Score=32.85 Aligned_cols=42 Identities=24% Similarity=0.450 Sum_probs=32.1
Q ss_pred CCCCEEEEeec-CCCeEEEeCCC--------CcEEEeCCCC-CCCCceEEEE
Q 044558 5 NKAKAVRLRSH-LGKYLVANDDE--------ETVRQSRKGS-SSEARWTVEF 46 (197)
Q Consensus 5 ~d~~~VrLRS~-~gkYL~ADeDG--------~~Vs~~~~~~-s~na~W~Ve~ 46 (197)
..+..||||.- .|+||++.+.- ..|+|..... ..++.|.|+.
T Consensus 5 ~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~~~~~~~W~ie~ 56 (57)
T smart00472 5 RWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPAGDANTLWLIEP 56 (57)
T ss_pred ccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCCCCCCCcEEEEe
Confidence 45789999985 89999986543 3688876554 5788999985
No 16
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=3.4 Score=41.71 Aligned_cols=140 Identities=17% Similarity=0.302 Sum_probs=89.8
Q ss_pred CCEEEEeec--CCCeEEEeCC----C----CcEEEeCCCCCCCCceEEEE--E-----------e-cCCCeEEecc-CCC
Q 044558 7 AKAVRLRSH--LGKYLVANDD----E----ETVRQSRKGSSSEARWTVEF--V-----------Q-DNCHLIRLKS-CYN 61 (197)
Q Consensus 7 ~~~VrLRS~--~gkYL~ADeD----G----~~Vs~~~~~~s~na~W~Ve~--~-----------~-~~~~~v~Lqs-ayG 61 (197)
|..|.||++ -|.|||.-.. | .-|++-.+ ...|..|.|+. . + .++..|+|+- .-|
T Consensus 317 GS~Itir~~~~~~gyLHSH~~~YP~g~S~QQQVT~Y~~-~D~NN~Wli~~~~~~~d~~~~~~~~~v~~G~~vrL~H~~T~ 395 (723)
T KOG3359|consen 317 GSTITLRHHKTGGGYLHSHLHTYPEGYSEQQQVTGYPH-KDANNEWLIELNPHPSDPVNATQIEPVRHGDIVRLRHKMTG 395 (723)
T ss_pred ccEEEEEecCCcceeeecccccCCCCcCccceEEeecc-cCCCceEEEecCCCCcccccCCcceeccCCcEEEEEecccC
Confidence 467899997 5789998643 3 34665554 45788999992 1 1 2247899988 999
Q ss_pred CcccCCCCCCCCCCCcceEEee-cCCCCCCCCCCCCceeeEee---c-----------CCEEEEEcC-CCceeccCCC-C
Q 044558 62 KYLTASEEPFLSGLTGKKVVQT-STSASSSENSDRCIEWEPVT---S-----------GFEVKFRTR-DGKFLRANGG-T 124 (197)
Q Consensus 62 RYL~as~~~~~~G~~g~~vvq~-~~~~~~~~~~d~~i~W~~~~---~-----------g~~v~Lr~~-~gryLRANG~-~ 124 (197)
|+|.+.+.++|...+-..|.=- +.+ ...|.+-.|.+.= . ...++|.|. -|+||-..|+ +
T Consensus 396 r~LhsHdv~apvs~~~~EvS~yg~~~----~~gd~~d~w~veIv~~~~~~~~~~i~tl~t~fRl~h~~t~c~L~ss~~~L 471 (723)
T KOG3359|consen 396 RNLHSHDVAAPVSPQQYEVSCYGDSG----FEGDANDLWRVEIVKKKPNEDQERIKTLTTEFRLIHVLTGCYLKSSGKKL 471 (723)
T ss_pred cccccCCCCCCCCCCceEEEEEeccc----cccCccccEEEEEecCCCCCCCceEEEeeeEEEEEEcccceEEccCCCcC
Confidence 9999999998876542222111 111 1234555566541 1 236788775 5899999987 7
Q ss_pred CCCc---ceEEEeCCCC-CcccCeEeEEEEEeeCC
Q 044558 125 PPWR---NSITHDVPHR-TATQDWVLWGVDIVDIL 155 (197)
Q Consensus 125 ~pwr---~~VTvD~~~~-~~~~~~~~W~Ve~Vp~~ 155 (197)
|.|- --|+.+...+ .. ..|-||.+.-.
T Consensus 472 P~WGf~Q~EV~c~~~~~~~~----T~WnVEe~~n~ 502 (723)
T KOG3359|consen 472 PEWGFEQQEVVCAKNPRDKS----TTWNVEEHENP 502 (723)
T ss_pred CcccccceEEecccCCcCCC----ceEEEecccCC
Confidence 7797 5566654311 22 35999987644
No 17
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=92.82 E-value=1.8 Score=35.33 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=66.9
Q ss_pred EEEEeecCCCeEEEeCCC-C-cEEEeCC-CCCCCCceEEEEEecCCCeEEecc-CCCCcccCCCCCCCCCCCcceEEee-
Q 044558 9 AVRLRSHLGKYLVANDDE-E-TVRQSRK-GSSSEARWTVEFVQDNCHLIRLKS-CYNKYLTASEEPFLSGLTGKKVVQT- 83 (197)
Q Consensus 9 ~VrLRS~~gkYL~ADeDG-~-~Vs~~~~-~~s~na~W~Ve~~~~~~~~v~Lqs-ayGRYL~as~~~~~~G~~g~~vvq~- 83 (197)
+|-.|+--||||.+---+ . -+.++.+ -..+-+++.|+. ..++.|.+|+ -.|+|-.++ ..|+.-.
T Consensus 7 ~V~FKg~n~kYLry~~~~~~~~lqf~~ddI~dp~v~~ev~~--~~dg~V~ik~~~~nKfWr~s---------~~WI~a~s 75 (139)
T smart00791 7 YVLFKGNNQKYLRYQSIQQYGLLQFSADKILDPLVQFEVFP--TYNGLVHIKSNYTNKFWRLS---------HYWITADA 75 (139)
T ss_pred EEEEEcCCCceEEEEeecccceeEecccccCCcceeEEEEE--cCCCcEEEEecCCCceEccC---------CCEEEecC
Confidence 888999999999987522 1 2333332 245778899988 3578999999 689998776 2454322
Q ss_pred -cCCCCCCCCCCCCceeeEee-cCCEEEEEcC-CCceeccC
Q 044558 84 -STSASSSENSDRCIEWEPVT-SGFEVKFRTR-DGKFLRAN 121 (197)
Q Consensus 84 -~~~~~~~~~~d~~i~W~~~~-~g~~v~Lr~~-~gryLRAN 121 (197)
++++ ..++..+.+|+. +++.+.||+. +|+|.+..
T Consensus 76 ~d~~e----~~sscTLF~Pv~~d~~~i~lr~vq~~~~~~r~ 112 (139)
T smart00791 76 NDPDE----NKSACTLFRPLYVEMKKIRLLNVQLGHYTKRY 112 (139)
T ss_pred CCCcc----CCCcccEEeEEeccCceEEEEEecCCceEEee
Confidence 3322 345788888888 5689999996 56665443
No 18
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=92.63 E-value=0.51 Score=37.09 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=50.1
Q ss_pred CCCEEEEeec-CCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CC--CCcccCCCCC
Q 044558 6 KAKAVRLRSH-LGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CY--NKYLTASEEP 70 (197)
Q Consensus 6 d~~~VrLRS~-~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ay--GRYL~as~~~ 70 (197)
+...|+||+- .++||+-|++|. ++... ..+.+|.|.-+.. +.+|-.+.| .| +-|||-...-
T Consensus 38 ~~g~v~i~~v~s~~YLCmn~~G~-ly~s~-~~~~dC~F~E~~~--~n~Y~~y~S~~~~~~~ylal~~~G 102 (123)
T cd00058 38 AVGVVSIKGVASCRYLCMNKCGK-LYGSK-GFTEECLFREELL--ENNYNTYASAKYRRRWYLALNKKG 102 (123)
T ss_pred CCCEEEEEEcccceEEEECCCCC-EEECC-CCCCCCEEEEEEc--cCCcEEEEEcccCCCcEEEECCCC
Confidence 3568999996 899999999995 88777 6788999998884 568999999 55 7899886654
No 19
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=92.06 E-value=4.2 Score=33.74 Aligned_cols=118 Identities=16% Similarity=0.242 Sum_probs=70.1
Q ss_pred EEEEeecCCCeEEEeCCCC----cEEEeCCC-CCCCCceEEEEEecCCCeEEecc-CCCCcccCCCCCCCCCCCcceEEe
Q 044558 9 AVRLRSHLGKYLVANDDEE----TVRQSRKG-SSSEARWTVEFVQDNCHLIRLKS-CYNKYLTASEEPFLSGLTGKKVVQ 82 (197)
Q Consensus 9 ~VrLRS~~gkYL~ADeDG~----~Vs~~~~~-~s~na~W~Ve~~~~~~~~v~Lqs-ayGRYL~as~~~~~~G~~g~~vvq 82 (197)
+|..+...||||.+-..+. -+.++.+. ..+-+++.|+.....++.|.+|+ -.|||-..+... +.|+.=
T Consensus 7 ~V~fkg~N~kYLry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s~n------~~WI~a 80 (153)
T PF07468_consen 7 YVAFKGDNGKYLRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSSPN------DYWIWA 80 (153)
T ss_dssp CEEEETTTS-EEEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESCCC--------BEEE
T ss_pred EEEEEcCCCcEEEEEecccccceeEEecCCcCCCCceeEEEEEcccCCCeEEEEeccCCceeEeCCCC------CcEEEe
Confidence 6667778999999875332 24555543 46889999998555679999999 689999964311 124433
Q ss_pred e--cCCCCCCCCCCCCceeeEeec----CCEEEEEcC-CCceeccCCCCCCCcceEEEe
Q 044558 83 T--STSASSSENSDRCIEWEPVTS----GFEVKFRTR-DGKFLRANGGTPPWRNSITHD 134 (197)
Q Consensus 83 ~--~~~~~~~~~~d~~i~W~~~~~----g~~v~Lr~~-~gryLRANG~~~pwr~~VTvD 134 (197)
. ++++ +.......+.+|+.. ...+.|++. +|+|.+.+---.+|.+..-..
T Consensus 81 da~~p~e--d~s~~~cTLF~Pv~vd~~~~~~i~l~~~~n~~~~~r~t~~~~~~sCL~A~ 137 (153)
T PF07468_consen 81 DADDPDE--DQSKPSCTLFEPVKVDVKDFNVIALRNMQNGHFCKRLTYGGKFVSCLNAA 137 (153)
T ss_dssp EESSHHH---TCSTCGG-EEEEESCCCETTEEEEEETTTTEEEEEE--STTBSSEEEEE
T ss_pred cCCCccc--ccCCCCceEEEEEEecCCCccEEEEEecCCceEEEEEccCCcceeeEeec
Confidence 2 2221 123357778889864 358888885 678876654334466665554
No 20
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=91.26 E-value=0.51 Score=38.40 Aligned_cols=100 Identities=24% Similarity=0.287 Sum_probs=57.9
Q ss_pred EEEEeec--CCCeEEEeCCCCcEEEeCCCCC-C-----CCceEEEEEecCCCeEEeccC--CCCcccCCCCCCCCCCCcc
Q 044558 9 AVRLRSH--LGKYLVANDDEETVRQSRKGSS-S-----EARWTVEFVQDNCHLIRLKSC--YNKYLTASEEPFLSGLTGK 78 (197)
Q Consensus 9 ~VrLRS~--~gkYL~ADeDG~~Vs~~~~~~s-~-----na~W~Ve~~~~~~~~v~Lqsa--yGRYL~as~~~~~~G~~g~ 78 (197)
.+||+|. -++||..+.. .|.++.-..+ . ++.|.|..=..+.++|.|+|+ -|.||...+..
T Consensus 2 ~~~~~s~~~~~ryirh~~~--~~~~~~v~~~s~~~~r~da~f~vvpGLa~~~~vSfES~~~PG~yLrh~~~~-------- 71 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRGS--LVRLDPVSSSSSALDRADATFRVVPGLADSSCVSFESVNYPGYYLRHSNFR-------- 71 (142)
T ss_dssp EEEEEESSSTTEEEEEETT--EEEEEES-SSGGHHHHHGG-EEEEE-SS-TTCEEEEESSSTTEEEEEETTE--------
T ss_pred eEEEECCCCCCeEEEEcCc--eEEEeeccCCcchhhccCceEEEEEccCCCCEEEEEECCCCCcEEEEECCE--------
Confidence 3688885 6899988654 3677664443 2 689999764345689999994 59999764322
Q ss_pred eEEeecCCCCCC-CCCCCCceeeEee---cCCEEEEEcCC--CceeccCC
Q 044558 79 KVVQTSTSASSS-ENSDRCIEWEPVT---SGFEVKFRTRD--GKFLRANG 122 (197)
Q Consensus 79 ~vvq~~~~~~~~-~~~d~~i~W~~~~---~g~~v~Lr~~~--gryLRANG 122 (197)
+++...+... -..|.. |-+.. ..+.+.|+..+ |+|||-.+
T Consensus 72 --v~l~~~d~s~~F~~dAT--F~~~~Gl~~~g~~sfeS~n~Pg~ylrh~~ 117 (142)
T PF05270_consen 72 --VRLEKNDGSALFREDAT--FCPRPGLAGPGYVSFESYNYPGRYLRHYN 117 (142)
T ss_dssp --EEEEE--SSHHHHHHT---EEEEE-SSSTTEEEEEESSSTTEEEEEET
T ss_pred --EEEeecCCCccccCCce--EEEecCCCCCCcceEEEecCCCeEEEEEC
Confidence 2222111000 001233 44433 24678998876 79998765
No 21
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=90.68 E-value=1.7 Score=32.05 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=55.7
Q ss_pred CCEEEEeec-CCCeEEEeC----CCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CCCCcccCCCCCCCCCCCcceE
Q 044558 7 AKAVRLRSH-LGKYLVAND----DEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CYNKYLTASEEPFLSGLTGKKV 80 (197)
Q Consensus 7 ~~~VrLRS~-~gkYL~ADe----DG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ayGRYL~as~~~~~~G~~g~~v 80 (197)
.....|++. -|+||-++. +|..|.+.......+-.|.|+.. ++++..|++ ..|++|...+.... .|..+
T Consensus 14 ~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~--~~g~y~I~n~~s~~~Ldv~~~~~~---~g~~v 88 (105)
T PF14200_consen 14 DGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPV--GDGYYRIRNKNSGKVLDVAGGSTA---NGTNV 88 (105)
T ss_dssp TTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEES--TTSEEEEEETSTTEEEEEGGGSSS---TTEBE
T ss_pred CCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEe--cCCeEEEEECCCCcEEEECCCCCC---CCCEE
Confidence 457899995 799999985 46678887665578889999984 568899999 78999988654322 35667
Q ss_pred EeecC
Q 044558 81 VQTST 85 (197)
Q Consensus 81 vq~~~ 85 (197)
+|-.+
T Consensus 89 ~~~~~ 93 (105)
T PF14200_consen 89 QQWEY 93 (105)
T ss_dssp EEEE-
T ss_pred EEEeC
Confidence 77665
No 22
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=90.34 E-value=1.4 Score=35.91 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=54.2
Q ss_pred eEEeccCCCCcccCCCCCCCCCCCcceEEeecCCCCCCCCCCCCceeeEee-cCCEEEEEcC-CCceeccCCCCCCCcce
Q 044558 53 LIRLKSCYNKYLTASEEPFLSGLTGKKVVQTSTSASSSENSDRCIEWEPVT-SGFEVKFRTR-DGKFLRANGGTPPWRNS 130 (197)
Q Consensus 53 ~v~LqsayGRYL~as~~~~~~G~~g~~vvq~~~~~~~~~~~d~~i~W~~~~-~g~~v~Lr~~-~gryLRANG~~~pwr~~ 130 (197)
+|.+||-.|.||.+-.. .+..-+|...+. -.|..+--++.. .++.|.||+. +|||-|++ +.|=..
T Consensus 7 ~V~FKg~n~kYLry~~~------~~~~~lqf~~dd----I~dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s---~~WI~a 73 (139)
T smart00791 7 YVLFKGNNQKYLRYQSI------QQYGLLQFSADK----ILDPLVQFEVFPTYNGLVHIKSNYTNKFWRLS---HYWITA 73 (139)
T ss_pred EEEEEcCCCceEEEEee------cccceeEecccc----cCCcceeEEEEEcCCCcEEEEecCCCceEccC---CCEEEe
Confidence 89999999999987542 245567776554 356666666654 3679999986 58999998 556333
Q ss_pred EEEeCCCCCcccCeEeEEEE
Q 044558 131 ITHDVPHRTATQDWVLWGVD 150 (197)
Q Consensus 131 VTvD~~~~~~~~~~~~W~Ve 150 (197)
.+-| +..+.....+.|.|-
T Consensus 74 ~s~d-~~e~~sscTLF~Pv~ 92 (139)
T smart00791 74 DAND-PDENKSACTLFRPLY 92 (139)
T ss_pred cCCC-CccCCCcccEEeEEe
Confidence 2222 211111334778776
No 23
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=89.44 E-value=1.3 Score=29.29 Aligned_cols=49 Identities=27% Similarity=0.523 Sum_probs=32.4
Q ss_pred eecCCEEEEEcC-CCceeccCCCC-CCCc---ceEEEeCCCCCcccCeEeEEEEEe
Q 044558 102 VTSGFEVKFRTR-DGKFLRANGGT-PPWR---NSITHDVPHRTATQDWVLWGVDIV 152 (197)
Q Consensus 102 ~~~g~~v~Lr~~-~gryLRANG~~-~pwr---~~VTvD~~~~~~~~~~~~W~Ve~V 152 (197)
++.|..|+|+|. .|+||...... ++|. .-||.......... -+|.||.+
T Consensus 4 v~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~~~~~--~~W~ie~~ 57 (57)
T smart00472 4 VRWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPAGDAN--TLWLIEPV 57 (57)
T ss_pred cccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCCCCCC--CcEEEEeC
Confidence 446789999996 59999998875 7776 46776532211111 25999863
No 24
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=89.26 E-value=1.1 Score=35.30 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=47.0
Q ss_pred CEEEEeec-CCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CCC--CcccCCCCC
Q 044558 8 KAVRLRSH-LGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CYN--KYLTASEEP 70 (197)
Q Consensus 8 ~~VrLRS~-~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ayG--RYL~as~~~ 70 (197)
..|+||+- .++||+-|++|. ++.... .+.+|.|.-+.. +.+|-.+.| .|. -|||-...-
T Consensus 44 g~V~ik~~~s~~YLCmn~~G~-ly~s~~-~~~dC~F~E~~~--~n~y~~y~S~~~~~~~ylal~~~G 106 (126)
T smart00442 44 GVVAIKGVASCRYLCMNKCGK-LYGSKN-FTEDCVFREEME--ENGYNTYASAKYRKRWYVALNKKG 106 (126)
T ss_pred CEEEEEEcccceEEEECCCCC-EEEccc-CCCCcEEEEEec--cCCeEEEEEcccCCceEEEECCCC
Confidence 57999996 899999999995 777665 668999987773 568888888 566 688876543
No 25
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.75 E-value=2 Score=43.17 Aligned_cols=96 Identities=23% Similarity=0.360 Sum_probs=65.3
Q ss_pred CCCCCCCCEEEEeec-CCCeEEEeCCCC-------cEEEeC--CCCCCCCceEEEEEecC-----------CCeEEecc-
Q 044558 1 MEFFNKAKAVRLRSH-LGKYLVANDDEE-------TVRQSR--KGSSSEARWTVEFVQDN-----------CHLIRLKS- 58 (197)
Q Consensus 1 ME~F~d~~~VrLRS~-~gkYL~ADeDG~-------~Vs~~~--~~~s~na~W~Ve~~~~~-----------~~~v~Lqs- 58 (197)
+|.-.||+.||||=+ .||+||+-+-=. -|||-. .....+-.|.||++... ....||+.
T Consensus 360 ~~~l~~G~~vrL~H~~T~~~Lh~H~~~~pvS~~~~EvS~yg~~~~gd~~d~w~i~i~~~~~~~~~~~i~pl~t~fRl~h~ 439 (699)
T COG1928 360 IEPLKDGQSVRLRHKYTGKNLHFHDVKPPVSGNQYEVSGYGDSFEGDEKDDWIIEIVKDEANEDQERIHPLETKFRLYHV 439 (699)
T ss_pred ceeccCCcEEEEEEeeccceeecCCCCCCCCCCceeeeeccccccCCcccceeeEeeeccCCCccceeeecccceeeeec
Confidence 456678999999987 999999986422 344443 23457789999987521 15788888
Q ss_pred CCCCcccCCCCCCCC-CCCcceEEeecCCCCCCCCCCCCceeeEee
Q 044558 59 CYNKYLTASEEPFLS-GLTGKKVVQTSTSASSSENSDRCIEWEPVT 103 (197)
Q Consensus 59 ayGRYL~as~~~~~~-G~~g~~vvq~~~~~~~~~~~d~~i~W~~~~ 103 (197)
--|.||+.++...|. |.....|+=... . +...-|-++.
T Consensus 440 ~~~cyL~s~~~~lP~Wgf~q~EV~c~~~-~------~~~T~W~ie~ 478 (699)
T COG1928 440 LTGCYLASHDLKLPEWGFSQREVLCAKD-R------DPSTTWNIEE 478 (699)
T ss_pred ccceeeccCCCCCCCcccccceeEeeec-c------CCcceeeeec
Confidence 799999999888664 655444432221 2 5556666643
No 26
>KOG3885 consensus Fibroblast growth factor [Signal transduction mechanisms]
Probab=83.30 E-value=2.9 Score=34.66 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=46.8
Q ss_pred ecC-CCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CCCCcccCCCCCCCCC
Q 044558 14 SHL-GKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CYNKYLTASEEPFLSG 74 (197)
Q Consensus 14 S~~-gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ayGRYL~as~~~~~~G 74 (197)
++- |.+|-+..|| +|.-.++..+..+...+..+ +-+.|.+|+ .-++||+=..+-.+-|
T Consensus 32 ~~t~g~hLqi~p~g-~V~Gt~~~~s~~siLei~sv--~~GvV~IkGV~s~~YL~Mn~~G~Lyg 91 (155)
T KOG3885|consen 32 CRNGGHFLRILPDG-TVDGTRDRSDQHTIFEIITV--AVGVVAIKGVESELYLAMNKEGKLYA 91 (155)
T ss_pred EcCCCEEEEEcCCC-ccccccccCCCceeEEEEEe--eecEEEEEEeeceeEEEECCCCcEec
Confidence 455 8999999999 58888888888888888876 457999999 8999999876654433
No 27
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.86 E-value=9.7 Score=38.58 Aligned_cols=96 Identities=24% Similarity=0.348 Sum_probs=68.0
Q ss_pred CCCCCCCEEEEeec-CCCeEEEeCCC-------CcEEEeCCC---CCCCCceEEEEEecC---C--------CeEEecc-
Q 044558 2 EFFNKAKAVRLRSH-LGKYLVANDDE-------ETVRQSRKG---SSSEARWTVEFVQDN---C--------HLIRLKS- 58 (197)
Q Consensus 2 E~F~d~~~VrLRS~-~gkYL~ADeDG-------~~Vs~~~~~---~s~na~W~Ve~~~~~---~--------~~v~Lqs- 58 (197)
|.-.+|..||||=- -||+||+-+=- .-|+|-... ...|..|+||++... + ..+||..
T Consensus 379 ~~v~~G~~vrL~H~~T~r~LhsHdv~apvs~~~~EvS~yg~~~~~gd~~d~w~veIv~~~~~~~~~~i~tl~t~fRl~h~ 458 (723)
T KOG3359|consen 379 EPVRHGDIVRLRHKMTGRNLHSHDVAAPVSPQQYEVSCYGDSGFEGDANDLWRVEIVKKKPNEDQERIKTLTTEFRLIHV 458 (723)
T ss_pred eeccCCcEEEEEecccCcccccCCCCCCCCCCceEEEEEeccccccCccccEEEEEecCCCCCCCceEEEeeeEEEEEEc
Confidence 45678999999975 89999998742 347776543 346789999998533 1 4678888
Q ss_pred CCCCcccCCCCCCCC-CCCcceEEeecCCCCCCCCCCCCceeeEee
Q 044558 59 CYNKYLTASEEPFLS-GLTGKKVVQTSTSASSSENSDRCIEWEPVT 103 (197)
Q Consensus 59 ayGRYL~as~~~~~~-G~~g~~vvq~~~~~~~~~~~d~~i~W~~~~ 103 (197)
--|.||..++...|. |.....|+=... . .+.+.-|-++.
T Consensus 459 ~t~c~L~ss~~~LP~WGf~Q~EV~c~~~-~-----~~~~T~WnVEe 498 (723)
T KOG3359|consen 459 LTGCYLKSSGKKLPEWGFEQQEVVCAKN-P-----RDKSTTWNVEE 498 (723)
T ss_pred ccceEEccCCCcCCcccccceEEecccC-C-----cCCCceEEEec
Confidence 799999999988774 755444432222 2 46777788864
No 28
>KOG3885 consensus Fibroblast growth factor [Signal transduction mechanisms]
Probab=72.53 E-value=9.6 Score=31.58 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=49.7
Q ss_pred CEEEEeec-CCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CCC----CcccCCCCCCCC
Q 044558 8 KAVRLRSH-LGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CYN----KYLTASEEPFLS 73 (197)
Q Consensus 8 ~~VrLRS~-~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ayG----RYL~as~~~~~~ 73 (197)
..|.+|.- -+.||+-|++|+ .+-+ ..-+.+|+|.=.+. +++|-..+| .|. -|++-+.+..|.
T Consensus 68 GvV~IkGV~s~~YL~Mn~~G~-LygS-~~~t~eC~F~E~~~--EN~YntY~S~~y~~~~~~yvaL~k~G~pr 135 (155)
T KOG3885|consen 68 GVVAIKGVESELYLAMNKEGK-LYAS-KEFTEECKFKELVL--ENYYNTYASAKYRHNGEWFVALNKKGIPR 135 (155)
T ss_pred cEEEEEEeeceeEEEECCCCc-EecC-CCCCccceeEEEee--cCCchheeehhhcccccEEEEECCCCCCC
Confidence 48999994 899999999996 6655 66778999986664 679999999 788 788887776553
No 29
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only]
Probab=71.42 E-value=35 Score=29.43 Aligned_cols=110 Identities=21% Similarity=0.277 Sum_probs=70.0
Q ss_pred CCEEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEec------C----CCeEEecc-CCCCcccCCCCCCCC-C
Q 044558 7 AKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQD------N----CHLIRLKS-CYNKYLTASEEPFLS-G 74 (197)
Q Consensus 7 ~~~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~------~----~~~v~Lqs-ayGRYL~as~~~~~~-G 74 (197)
.+.+||-||==||=.---- .+|+--......|.-|+|-.+.+ + +..|||+- --|+.|..---..|+ |
T Consensus 38 ~~~~RLHSHDVkYGSgSGQ-QSVTgv~~~dD~NSyW~Ik~~~~~~c~rG~pikcG~~iRL~H~~TgknLHSHhf~sPlSg 116 (211)
T KOG3358|consen 38 KHKFRLHSHDVKYGSGSGQ-QSVTGVEGVDDSNSYWRIKPVSGTTCERGDPIKCGQTIRLTHLKTGKNLHSHHFTSPLSG 116 (211)
T ss_pred ccceeeeccccCccCCCCc-ceeecccccccCcceEEEecCCCCcccCCCccccCCeEEEEEeecccchhhcccCCCCCC
Confidence 3456777764466332221 24555455556788999998752 1 26899999 899999876655555 3
Q ss_pred CCcceEEeecCCCCCCCCCCCCceeeEeecC------CEEEEEcCC-CceeccCCC
Q 044558 75 LTGKKVVQTSTSASSSENSDRCIEWEPVTSG------FEVKFRTRD-GKFLRANGG 123 (197)
Q Consensus 75 ~~g~~vvq~~~~~~~~~~~d~~i~W~~~~~g------~~v~Lr~~~-gryLRANG~ 123 (197)
..+..+.=.+- .-|..=.|.+++.| ..|+|+|.+ +-||.-.|+
T Consensus 117 nqEVSafG~dg------egDtgD~Wtvic~g~~W~r~~~vrl~Hi~T~~yLs~sg~ 166 (211)
T KOG3358|consen 117 NQEVSAFGEDG------EGDTGDHWTVICNGKTWKRDARVRLQHIDTSVYLSVSGE 166 (211)
T ss_pred CeeEEeecccC------CCCcccceEEEeCCccccccceEEEEEeccceeEEeccc
Confidence 33333321121 23555569999854 489999964 899988875
No 30
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=70.72 E-value=14 Score=30.26 Aligned_cols=91 Identities=21% Similarity=0.334 Sum_probs=51.5
Q ss_pred CCCCceEEEEEecC---------CCeEEecc-CCCCcccCCCCCCCCCCC---cceEEeecCCC-CCCCCCCC-CceeeE
Q 044558 37 SSEARWTVEFVQDN---------CHLIRLKS-CYNKYLTASEEPFLSGLT---GKKVVQTSTSA-SSSENSDR-CIEWEP 101 (197)
Q Consensus 37 s~na~W~Ve~~~~~---------~~~v~Lqs-ayGRYL~as~~~~~~G~~---g~~vvq~~~~~-~~~~~~d~-~i~W~~ 101 (197)
+.++-|.||.+..+ +..|||+- .-|+||.+.+..+|...+ -..+..-.... .++. .|. .-.|+.
T Consensus 45 ~~~slW~IE~~~~~~~~g~~v~~g~~iRL~H~~Tg~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~-~d~~~~i~~~ 123 (190)
T PF02815_consen 45 SANSLWQIEPVSEDPWSGGPVKWGDVIRLRHLSTGKYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDA-NDDKVEIFEE 123 (190)
T ss_dssp SGGGEEEEEE-TSSTTTTSB-BTTSEEEEEETTTS-EEEEEEEEECCCTCGG-SEEEEEEEEECESSS--SSG-GGEEEE
T ss_pred ccccceEEecCCCCcccCCcccCCCEEEEEEccCCCEEEEcccccccccccccCcceeeEeeccccCCc-cccceeEEEe
Confidence 45677999984321 36899999 999999999888666443 22222211100 0000 111 111222
Q ss_pred ee-----------cCCEEEEEcC-CCceeccCCC-CCCCc
Q 044558 102 VT-----------SGFEVKFRTR-DGKFLRANGG-TPPWR 128 (197)
Q Consensus 102 ~~-----------~g~~v~Lr~~-~gryLRANG~-~~pwr 128 (197)
.. .+..++|+|. .|+||-+... +|.|-
T Consensus 124 ~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~lp~wg 163 (190)
T PF02815_consen 124 KSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVKLPEWG 163 (190)
T ss_dssp EESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEES-TTT
T ss_pred cccCCccCCcEEecccEEEEEECCcCEEEecCCccccccc
Confidence 11 2468999996 6999988764 66786
No 31
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=67.53 E-value=4.7 Score=35.62 Aligned_cols=54 Identities=26% Similarity=0.333 Sum_probs=41.1
Q ss_pred CEEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CCCCcc
Q 044558 8 KAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CYNKYL 64 (197)
Q Consensus 8 ~~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ayGRYL 64 (197)
.-|-|+|.+||||.-+.||- |.+..+.-.....|.-..+ ++..++|.| -.=+|+
T Consensus 94 srIaLKsGyGKYlsinsdgl-vvg~qeAvG~~EQw~~vFq--~~r~a~~as~s~~~~~ 148 (246)
T KOG3962|consen 94 SRIALKSGYGKYLSINSDGL-VVGRQEAVGSREQWEPVFQ--EGRMALLASNSCFIRC 148 (246)
T ss_pred ceEEecccccceeeecCCcc-EEEehhhcCcHhhchhhhh--ccceEEeeccceeEEe
Confidence 57899999999999999994 9998886666677876664 446666665 455555
No 32
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=58.97 E-value=14 Score=40.50 Aligned_cols=67 Identities=30% Similarity=0.407 Sum_probs=49.4
Q ss_pred CCCCCEEEEeec-CCCeEEEeCCC--CcEEEeCC-------CCCCCCceEEEEEecCC-----Ce----EEecc-CCCCc
Q 044558 4 FNKAKAVRLRSH-LGKYLVANDDE--ETVRQSRK-------GSSSEARWTVEFVQDNC-----HL----IRLKS-CYNKY 63 (197)
Q Consensus 4 F~d~~~VrLRS~-~gkYL~ADeDG--~~Vs~~~~-------~~s~na~W~Ve~~~~~~-----~~----v~Lqs-ayGRY 63 (197)
..+|..|||=-. ..|||.-||-- ..|.++.. ..|.+|-|.||++++++ ++ -|+|- |-|-|
T Consensus 241 lKgGDVVRLFHAeQekFLT~Dey~kq~hVFLRtT~RqSAtsATSSkALWEveVVqhd~cRGGag~WNslyRFKHLATg~Y 320 (2706)
T KOG3533|consen 241 LKGGDVVRLFHAEQEKFLTCDEYPKQNHVFLRTTNRQSATSATSSKALWEVEVVQHDPCRGGAGKWNSLYRFKHLATGMY 320 (2706)
T ss_pred hccCcEEEeecccccceeehhcccccceEEEeccCCcccccccccccceeEEEEecCCCCCcccchhhhhhhhhhcccce
Confidence 346788998764 78999999854 34666531 23578999999998542 34 48888 99999
Q ss_pred ccCCCCC
Q 044558 64 LTASEEP 70 (197)
Q Consensus 64 L~as~~~ 70 (197)
|+|-.++
T Consensus 321 LaAE~~~ 327 (2706)
T KOG3533|consen 321 LAAEPSP 327 (2706)
T ss_pred eecCCCc
Confidence 9997666
No 33
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=56.48 E-value=21 Score=28.94 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=43.9
Q ss_pred CCCEEEEeec--CCCeEEEeCCCCcEEEeCCCCC----CCCceEEEEEecCCCeEEecc--CCCCcccCCCC
Q 044558 6 KAKAVRLRSH--LGKYLVANDDEETVRQSRKGSS----SEARWTVEFVQDNCHLIRLKS--CYNKYLTASEE 69 (197)
Q Consensus 6 d~~~VrLRS~--~gkYL~ADeDG~~Vs~~~~~~s----~na~W~Ve~~~~~~~~v~Lqs--ayGRYL~as~~ 69 (197)
|...|-|.|. =|.||.. .++ .|.++++..+ ..|-|..+.=....+.+.|+| --||||...+.
T Consensus 49 ~~~~vSfES~~~PG~yLrh-~~~-~v~l~~~d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~~~ 118 (142)
T PF05270_consen 49 DSSCVSFESVNYPGYYLRH-SNF-RVRLEKNDGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHYNG 118 (142)
T ss_dssp -TTCEEEEESSSTTEEEEE-ETT-EEEEEE--SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEETT
T ss_pred CCCEEEEEECCCCCcEEEE-ECC-EEEEeecCCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEECC
Confidence 5668999996 5999976 667 5888886554 568898887333468999999 48999987553
No 34
>TIGR03299 LGT_TIGR03299 phage/plasmid-related protein TIGR03299. Members of this uncharacterized protein family are found in various Mycobacterium phage genomes, in Streptomyces coelicolor plasmid SCP1, and in bacterial genomes near various markers that suggest lateral gene transfer. The function is unknown.
Probab=52.71 E-value=9.8 Score=34.72 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=28.0
Q ss_pred EeEEEEEeeCCCCcccccccccccccccccCCCcccc--cCCCCCCceEEe
Q 044558 145 VLWGVDIVDILDFESLSNCESFASSLSNCSSHSEDFA--RSDSGSVPAVVS 193 (197)
Q Consensus 145 ~~W~Ve~Vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 193 (197)
|-|+|+-+|+.-..... ..+..+++.+. |+|++.+++|||
T Consensus 33 ldW~v~~~pv~~~~~~~---------~~~~~~p~~k~~vRsdt~~~LgVVs 74 (309)
T TIGR03299 33 FDWRIEEVPVLYVWPGD---------GLIRPHPDQKVLVRSDTGAPLSVVS 74 (309)
T ss_pred CCCEEEEeeeeeecCCC---------CceeecCCeeEEEEcCCCCeeeEeC
Confidence 67999999995321111 22455666664 999999999997
No 35
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=52.49 E-value=22 Score=29.07 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=41.4
Q ss_pred CCCEEEEeec-CCCeEEEeCCC----------CcEEEeCCCC---C-CCC-ceEEEEEec----------CCCeEEecc-
Q 044558 6 KAKAVRLRSH-LGKYLVANDDE----------ETVRQSRKGS---S-SEA-RWTVEFVQD----------NCHLIRLKS- 58 (197)
Q Consensus 6 d~~~VrLRS~-~gkYL~ADeDG----------~~Vs~~~~~~---s-~na-~W~Ve~~~~----------~~~~v~Lqs- 58 (197)
-+..||||-- -|+||++.+.. ..|+|-.... . .+. ...++.... .+.+++|+.
T Consensus 67 ~g~~iRL~H~~Tg~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~~d~~~~i~~~~~~~~~~~~~~~~~~s~frL~H~ 146 (190)
T PF02815_consen 67 WGDVIRLRHLSTGKYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDANDDKVEIFEEKSSTGMGEDEIKTLDSYFRLRHV 146 (190)
T ss_dssp TTSEEEEEETTTS-EEEEEEEEECCCTCGG-SEEEEEEEEECESSS-SSG-GGEEEEEESSSCSSSSBBBTTSEEEEEET
T ss_pred CCCEEEEEEccCCCEEEEcccccccccccccCcceeeEeeccccCCccccceeEEEecccCCccCCcEEecccEEEEEEC
Confidence 3679999985 89999998754 2355432111 1 222 222332221 137999999
Q ss_pred CCCCcccCCCCCCC
Q 044558 59 CYNKYLTASEEPFL 72 (197)
Q Consensus 59 ayGRYL~as~~~~~ 72 (197)
+.|.||.+.+...|
T Consensus 147 ~t~~~L~~~~~~lp 160 (190)
T PF02815_consen 147 ATGCWLHSHDVKLP 160 (190)
T ss_dssp TTTEEEEEEEEES-
T ss_pred CcCEEEecCCcccc
Confidence 89999999887764
No 36
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.52 E-value=1.9e+02 Score=29.52 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=80.3
Q ss_pred CEEEEeec--CCCeEEEeC------CC-CcEEEeCCCCCCCCceEEEEEe---------cCCCeEEecc-CCCCcccCCC
Q 044558 8 KAVRLRSH--LGKYLVAND------DE-ETVRQSRKGSSSEARWTVEFVQ---------DNCHLIRLKS-CYNKYLTASE 68 (197)
Q Consensus 8 ~~VrLRS~--~gkYL~ADe------DG-~~Vs~~~~~~s~na~W~Ve~~~---------~~~~~v~Lqs-ayGRYL~as~ 68 (197)
..|-||+. -|.|||.-. +| .-|++-. -...|..|.+|... .++..|+|+- ..|++|...+
T Consensus 306 S~itirh~~t~g~~LHSh~~~YP~gs~qqqvt~y~-~~d~NN~W~~e~~~~~~~~~~~l~~G~~vrL~H~~T~~~Lh~H~ 384 (699)
T COG1928 306 STITIRHAGTGGGYLHSHNQLYPEGSEQQQVTGYG-HKDANNEWLIELSDENATQIEPLKDGQSVRLRHKYTGKNLHFHD 384 (699)
T ss_pred eEEEEeccCCccchhhcccCCCCCCcccceeeccc-ccccccceeeeecccccccceeccCCcEEEEEEeeccceeecCC
Confidence 56778875 457777642 22 2344433 35678999999532 1236788888 8999999988
Q ss_pred CCCCCCCC--cceEEeecCCCCCCCCCCCCceeeEee--------------cCCEEEEEcC-CCceeccCCC-CCCCc--
Q 044558 69 EPFLSGLT--GKKVVQTSTSASSSENSDRCIEWEPVT--------------SGFEVKFRTR-DGKFLRANGG-TPPWR-- 128 (197)
Q Consensus 69 ~~~~~G~~--g~~vvq~~~~~~~~~~~d~~i~W~~~~--------------~g~~v~Lr~~-~gryLRANG~-~~pwr-- 128 (197)
.+.+-..+ +....-.++ + -|.+=.|...- -....+|+|. -|+||-..++ +|.|-
T Consensus 385 ~~~pvS~~~~EvS~yg~~~-~-----gd~~d~w~i~i~~~~~~~~~~~i~pl~t~fRl~h~~~~cyL~s~~~~lP~Wgf~ 458 (699)
T COG1928 385 VKPPVSGNQYEVSGYGDSF-E-----GDEKDDWIIEIVKDEANEDQERIHPLETKFRLYHVLTGCYLASHDLKLPEWGFS 458 (699)
T ss_pred CCCCCCCCceeeeeccccc-c-----CCcccceeeEeeeccCCCccceeeecccceeeeecccceeeccCCCCCCCcccc
Confidence 88665333 111111121 1 12222333321 1236777775 5899988875 77797
Q ss_pred -ceEEEeCCCCCcccCeEeEEEEEeeCC
Q 044558 129 -NSITHDVPHRTATQDWVLWGVDIVDIL 155 (197)
Q Consensus 129 -~~VTvD~~~~~~~~~~~~W~Ve~Vp~~ 155 (197)
.-|+........ ..|.||-+...
T Consensus 459 q~EV~c~~~~~~~----T~W~ie~~~n~ 482 (699)
T COG1928 459 QREVLCAKDRDPS----TTWNIEENVND 482 (699)
T ss_pred cceeEeeeccCCc----ceeeeecccCc
Confidence 556665431122 24999987654
No 37
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=45.85 E-value=47 Score=27.21 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=42.5
Q ss_pred CCCCCEEEEeec-CCCeEEEeCCCCcEEEe-CCCCCCCCceEEEEEecCCCeEEecc-CCCCcccCCCCC
Q 044558 4 FNKAKAVRLRSH-LGKYLVANDDEETVRQS-RKGSSSEARWTVEFVQDNCHLIRLKS-CYNKYLTASEEP 70 (197)
Q Consensus 4 F~d~~~VrLRS~-~gkYL~ADeDG~~Vs~~-~~~~s~na~W~Ve~~~~~~~~v~Lqs-ayGRYL~as~~~ 70 (197)
|++..+|.+++. -|+=|.|+++|. +... .+.......|.+.. ...+-|.||| +-|+=|.....+
T Consensus 48 ~~~~g~Vqf~n~~~~~CL~~~~~G~-~~~~~C~~~~~~q~F~iiP--tttgAVQIks~~~~~Cl~~~~~~ 114 (150)
T PF03498_consen 48 FFPFGYVQFVNPKTGTCLAAYGNGV-FHYKSCDQDNLEQVFSIIP--TTTGAVQIKSLSTGECLQTFNNS 114 (150)
T ss_dssp -STTCEEEEEETTTSEEEEEETTCE-EEE--TTTCHGHH-EEEEE--BTTS-EEEEETTT--EEEE-STT
T ss_pred cCCCCEEEEEcCCCCcceeecCCCe-EeecccCCCChhceEEEEE--cCCCcEEEEecCCCceEEecCCC
Confidence 445679999996 788999999993 5433 23335567898887 4679999999 788777765544
No 38
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=43.40 E-value=74 Score=26.44 Aligned_cols=71 Identities=21% Similarity=0.224 Sum_probs=41.8
Q ss_pred CeEEeccCCCCcccCCCCCCCCCCCcceEEeecCCCCCCCCCCCCceeeEee---cCCEEEEEcC-CCceeccCCCCCCC
Q 044558 52 HLIRLKSCYNKYLTASEEPFLSGLTGKKVVQTSTSASSSENSDRCIEWEPVT---SGFEVKFRTR-DGKFLRANGGTPPW 127 (197)
Q Consensus 52 ~~v~LqsayGRYL~as~~~~~~G~~g~~vvq~~~~~~~~~~~d~~i~W~~~~---~g~~v~Lr~~-~gryLRANG~~~pw 127 (197)
.+|.+++-.|.||.+-.+. .....-+|.+.+. ..|+.+--++.. .++.|.||.. .|||.|.+..-.-|
T Consensus 6 ~~V~fkg~N~kYLry~~e~----~~~~~~LqF~~ed----i~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s~n~~W 77 (153)
T PF07468_consen 6 YYVAFKGDNGKYLRYRTED----IQQYGYLQFSGED----IGDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSSPNDYW 77 (153)
T ss_dssp CCEEEETTTS-EEEEEESS----CTTCCEEEEEESS----TT-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESCCC--B
T ss_pred EEEEEEcCCCcEEEEEecc----cccceeEEecCCc----CCCCceeEEEEEcccCCCeEEEEeccCCceeEeCCCCCcE
Confidence 3678888899999874422 1133456666544 456666677665 3679999987 58999975332336
Q ss_pred cce
Q 044558 128 RNS 130 (197)
Q Consensus 128 r~~ 130 (197)
=-+
T Consensus 78 I~a 80 (153)
T PF07468_consen 78 IWA 80 (153)
T ss_dssp EEE
T ss_pred EEe
Confidence 433
No 39
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=38.80 E-value=1.3e+02 Score=20.92 Aligned_cols=96 Identities=24% Similarity=0.314 Sum_probs=56.6
Q ss_pred EEeec--CCCeEEEeCC--CCcEEEeCCCCC-CCCceEEEEEecCCCeEEeccCCCCcccCCCCCCCCCCCcceEEeecC
Q 044558 11 RLRSH--LGKYLVANDD--EETVRQSRKGSS-SEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKVVQTST 85 (197)
Q Consensus 11 rLRS~--~gkYL~ADeD--G~~Vs~~~~~~s-~na~W~Ve~~~~~~~~v~LqsayGRYL~as~~~~~~G~~g~~vvq~~~ 85 (197)
+|++. -|+.|.+... |..|.+..-... .+-.|.+.. .+.+++++ .++.|.+.... .|..+++...
T Consensus 2 ~~~~~~~~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~----~g~~~~~~-~~~Cl~~~~~~-----~~~~~~~~~c 71 (124)
T cd00161 2 TIRNVNNTGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTS----DGTIRIKS-SNLCLDVGGDA-----PGSKVRLYTC 71 (124)
T ss_pred eeEeCCCCCeEEECCCCCCCCEEEEEECCCCCccCCEEEeC----CCeEEEcC-CCeEEcccCCC-----CCCEEEEEEC
Confidence 45554 4788887773 567777654333 677898864 57888887 78888875543 2344444332
Q ss_pred CCCCCCCCCCCceeeEeecCCEEEEEcCCCceeccCCC
Q 044558 86 SASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRANGG 123 (197)
Q Consensus 86 ~~~~~~~~d~~i~W~~~~~g~~v~Lr~~~gryLRANG~ 123 (197)
+. ....-.|..... +.+..+ ..+..|-..+.
T Consensus 72 ~~-----~~~~Q~W~~~~~-~~i~~~-~~~~cl~~~~~ 102 (124)
T cd00161 72 SG-----GSDNQRWTFNKD-GTIRNL-KSGKCLDVKGG 102 (124)
T ss_pred CC-----CCcCCEEEECCC-cEEEEC-CCCeEEeCCCC
Confidence 21 234567877543 333322 25677755543
No 40
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum to discriminate between different types of neuronal activity []. ; PDB: 3UJ4_B 3UJ0_B 3T8S_B 3JRR_B 1XZZ_A 3ILA_B 3HSM_A 2XOA_A 3IM6_A 3IM7_A ....
Probab=30.01 E-value=72 Score=27.04 Aligned_cols=61 Identities=25% Similarity=0.287 Sum_probs=43.3
Q ss_pred CCEEEEee-cCCCeEEEeCCC--------CcEEEeCCCCCCCCceEEEEEe-----cC----CCeEEecc-CCCCcccCC
Q 044558 7 AKAVRLRS-HLGKYLVANDDE--------ETVRQSRKGSSSEARWTVEFVQ-----DN----CHLIRLKS-CYNKYLTAS 67 (197)
Q Consensus 7 ~~~VrLRS-~~gkYL~ADeDG--------~~Vs~~~~~~s~na~W~Ve~~~-----~~----~~~v~Lqs-ayGRYL~as 67 (197)
|+.|.|+= .-+|||....+. -.|.++......++.|+|+..- ++ ++.|.|.+ +.++||..+
T Consensus 101 Gq~IQL~H~~S~kyL~~~~~~~s~~e~~~~~v~L~~~~~~e~s~F~i~P~~k~r~~Gd~V~~gD~i~l~~~~~~~~Lh~s 180 (214)
T PF08709_consen 101 GQAIQLLHVKSNKYLTCNSTEPSEYEKNNFKVSLQEFSSGENSWFRIHPAYKQRSEGDPVRYGDQIILISVSTEQYLHVS 180 (214)
T ss_dssp TEEEEEEETTTTEEEEEEEEEESSSSTTSEEEEEESSSSSGGGEEEEEESSTTS-TTSB-BTT-EEEEEETTT-SEEEEE
T ss_pred cceEEEeEeCccEEEEEeCCCCCcccccceEEEeccCCCcccEEEEEEcchheEcCCCeeeeCCEEEEEECCCCCccccc
Confidence 67888885 479999877554 2688887755467899999631 22 37899998 899999954
Done!