BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044559
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
Length = 566
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/557 (40%), Positives = 315/557 (56%), Gaps = 28/557 (5%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+G +LA RLVQIG F+V GD+NL LLD L+ + I CCNELN G++A+GYARS
Sbjct: 4 TVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARS 63
Query: 105 RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ 164
G A VVTF+VG +S +NA+ GAY+ENLP+I I G PNSND GT ILHHTIG D+S
Sbjct: 64 NGAAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSY 123
Query: 165 ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPV 224
+L + VTC + + A ID + TAL+E KP Y+ +ACN+ + P PV
Sbjct: 124 QLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNIAS--EPCVRPGPV 181
Query: 225 PFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVA 284
LS + L L K+ PV++ G K+R A A A LAD AV
Sbjct: 182 SSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVT 241
Query: 285 VMPSAKGLVPEHHPHFIGTYWGAVS---------------------TAFFSVGYSLLLKK 323
+M +AKG PE H F G YWG VS + +VG+S K
Sbjct: 242 IMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKG 301
Query: 324 EKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEP 383
++ +PDRV + +G A+ ++ FL+AL+++ + + + + VP
Sbjct: 302 PNVILAEPDRVTV-DGRAYDGFTLRAFLQALAEKAPARPASAQ---KSSVPTCSLTATSD 357
Query: 384 KEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGA 443
+ L + + +HI +L+S T ++AETGDSWFN ++ LP+G E +MQ+G IGWSV +
Sbjct: 358 EAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPRGARVELEMQWGHIGWSVPS 417
Query: 444 TLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503
G A +++ + +GDGSFQ+TAQ+V+ M+R IIFLINN GY IE+ IHDGPY
Sbjct: 418 AFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPY 477
Query: 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563
N IKNW+Y GL++ + GEG K +EL EAI A + IE + + D
Sbjct: 478 NYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKANTRGP-TLIECQIDRTDC 536
Query: 564 SKELLEWGSRVSAANSR 580
+ L++WG +V++ N+R
Sbjct: 537 TDMLVQWGRKVASTNAR 553
>pdb|2WVA|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust.
Identities = 235/570 (41%), Positives = 333/570 (58%), Gaps = 42/570 (7%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+G +LA RLVQIG F+V GD+NL LLD+L+ + + CCNELN G++A+GYAR+
Sbjct: 4 TVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARA 63
Query: 105 RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ 164
+G A VVT++VG LS +AI GAY+ENLP+I I G PN+ND+ +LHH +G D+
Sbjct: 64 KGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
Query: 165 ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPV 224
+L + +T + E+A ID + TAL+E KPVY+ +ACN+ ++P P
Sbjct: 124 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMP----CAAPG 179
Query: 225 PFS--LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYA 282
P S + + S+E L F+ K ++ G K+R A A A V+ ADA G A
Sbjct: 180 PASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGA 239
Query: 283 VAVMPSAKGLVPEHHPHFIGTYWGAVS---------------------TAFFSVGYSLLL 321
VA M +AK PE +PH+IGT WG VS + + G++ +
Sbjct: 240 VATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIP 299
Query: 322 KKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPE-GQPPK 380
+K V+ +P R V+ NG F V +KD+L L++++ T A + + + E +
Sbjct: 300 DPKKLVLAEP-RSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAP 358
Query: 381 CEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWS 440
+P PL + + ++ +L+ T VIAETGDSWFN Q++KLP G E++MQ+G IGWS
Sbjct: 359 ADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWS 418
Query: 441 VGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD 500
V A GYA PE+R I +GDGSFQ+TAQ+V+ M+R IIFLINN GYTIEV IHD
Sbjct: 419 VPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHD 478
Query: 501 GPYNVIKNWNYTGLVDAIH------NGEGKCWTTKVFCE--EELIEAIENATGPKKDCLC 552
GPYN IKNW+Y GL++ + +G GK K E E + A+ N GP
Sbjct: 479 GPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGP-----T 533
Query: 553 FIEVLVHKDDTSKELLEWGSRVSAANSRPP 582
IE + ++D ++EL++WG RV+AANSR P
Sbjct: 534 LIECFIGREDCTEELVKWGKRVAAANSRKP 563
>pdb|3OE1|A Chain A, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|B Chain B, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|C Chain C, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|D Chain D, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
Length = 568
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/570 (41%), Positives = 333/570 (58%), Gaps = 42/570 (7%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+G +LA RLVQIG F+V GD+NL LLD+L+ + + CCNELN G++A+GYAR+
Sbjct: 4 TVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARA 63
Query: 105 RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ 164
+G A VVT++VG LS +AI GAY+ENLP+I I G PN+ND+ +LHH +G D+
Sbjct: 64 KGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
Query: 165 ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPV 224
+L + +T + E+A ID + TAL+E KPVY+ +ACN+ ++P P
Sbjct: 124 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMP----CAAPG 179
Query: 225 PFS--LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYA 282
P S + + S+E L F+ K ++ G K+R A A A V+ ADA G A
Sbjct: 180 PASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGA 239
Query: 283 VAVMPSAKGLVPEHHPHFIGTYWGAVS---------------------TAFFSVGYSLLL 321
VA M +AK PE +PH+IGT WG VS + + G++ +
Sbjct: 240 VATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIP 299
Query: 322 KKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPE-GQPPK 380
+K V+ +P R V+ NG F V +KD+L L++++ T A + + + E +
Sbjct: 300 DPKKLVLAEP-RSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAP 358
Query: 381 CEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWS 440
+P PL + + ++ +L+ T VIAETGDSWFN Q++KLP G E++MQ+G IGWS
Sbjct: 359 ADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWS 418
Query: 441 VGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD 500
V A GYA PE+R I +GDGSFQ+TAQ+V+ M+R IIFLINN GYTI+V IHD
Sbjct: 419 VPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIDVMIHD 478
Query: 501 GPYNVIKNWNYTGLVDAIH------NGEGKCWTTKVFCE--EELIEAIENATGPKKDCLC 552
GPYN IKNW+Y GL++ + +G GK K E E + A+ N GP
Sbjct: 479 GPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGP-----T 533
Query: 553 FIEVLVHKDDTSKELLEWGSRVSAANSRPP 582
IE + ++D ++EL++WG RV+AANSR P
Sbjct: 534 LIECFIGREDCTEELVKWGKRVAAANSRKP 563
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 232/566 (40%), Positives = 329/566 (58%), Gaps = 34/566 (6%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+G +LA RLVQIG F+V GD+NL LLD+L+ + + CCNELN G++A+GYAR+
Sbjct: 4 TVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARA 63
Query: 105 RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ 164
+G A VVT++VG LS +AI GAY+ENLP+I I G PN+ND+ +LHH +G D+
Sbjct: 64 KGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
Query: 165 ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPV 224
+L + +T + E+A ID + TAL+E KPVY+ +ACN+ ++P P
Sbjct: 124 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMP----CAAPG 179
Query: 225 PFS--LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYA 282
P S + + S+E L F+ K ++ G K+R A A A V+ DA G A
Sbjct: 180 PASALFNDEASDEASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGA 239
Query: 283 VAVMPSAKGLVPEHHPHFIGTYWGAVS---------------------TAFFSVGYSLLL 321
VA M +AK PE + +IGT WG VS + + G++ +
Sbjct: 240 VATMAAAKSFFPEENALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIP 299
Query: 322 KKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPE-GQPPK 380
+K V+ +P R V+ NG F V +KD+L L++++ T + + + + E +
Sbjct: 300 DPKKLVLAEP-RSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGSLDFFKSLNAGELKKAAP 358
Query: 381 CEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWS 440
+P PL + + ++ +L+ T VIAETGDSWFN Q++KLP G E++MQ+G IGWS
Sbjct: 359 ADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWS 418
Query: 441 VGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD 500
V A GYA PE+R I +GDGSFQ+TAQ+V+ M+R IIFLINN GYTIEV IHD
Sbjct: 419 VPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHD 478
Query: 501 GPYNVIKNWNYTGLVDAIH-NG---EGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEV 556
GPYN IKNW+Y GL++ + NG G K EL EAI+ A D IE
Sbjct: 479 GPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALA-NTDGPTLIEC 537
Query: 557 LVHKDDTSKELLEWGSRVSAANSRPP 582
+ ++D ++EL++WG RV+AANSR P
Sbjct: 538 FIGREDCTEELVKWGKRVAAANSRKP 563
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 249 bits (635), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 186/571 (32%), Positives = 273/571 (47%), Gaps = 42/571 (7%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
SE TLG++L RL Q+ VF +PGDFNL+LLD + G+ G NELNA YAADGY
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGY 61
Query: 102 ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
AR +G+ + TF VG LS LN IAG+Y+E++ ++ +VG P+ + +LHHT+G D
Sbjct: 62 ARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGD 121
Query: 162 FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPT-FS 220
F+ R ++ A++ ++ A ID + T +PVY+ + NL + P
Sbjct: 122 FTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLL 181
Query: 221 REPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVK-PVLVAGPKMRVAKACNAFVELADAC 279
+ P+ SL P N+ L+K K PV++A +L D
Sbjct: 182 QTPIDMSLKP---NDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLT 238
Query: 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVST-----------AFFSVG----------YS 318
+ V P KG + E HP + G Y G +S SVG +S
Sbjct: 239 QFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFS 298
Query: 319 LLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQP 378
K + V D + I N F V MK L+ L L + A + Y + VP P
Sbjct: 299 YSYKTKNIVEFHSDHMKIRNA-TFPGVQMKFVLQKL---LTTIADAAKGYKPVAVPARTP 354
Query: 379 PKCE--PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGS 436
PL+ ++ + L VIAETG S F + P Q+ +GS
Sbjct: 355 ANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGS 414
Query: 437 IGWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
IG++ GATLG A + P+KRVI IGDGS Q+T Q++STM+R G K +F++NN GY
Sbjct: 415 IGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGY 474
Query: 493 TIEVEIHDGP---YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKD 549
TI+ IH GP YN I+ W++ L+ G T +V E + ++ +
Sbjct: 475 TIQKLIH-GPKAQYNEIQGWDHLSLLPTF--GAKDYETHRVATTGEWDKLTQDKSFNDNS 531
Query: 550 CLCFIEVLVHKDDTSKELLEWGSRVSAANSR 580
+ IEV++ D + L+E +A N++
Sbjct: 532 KIRMIEVMLPVFDAPQNLVEQAKLTAATNAK 562
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 249 bits (635), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 184/570 (32%), Positives = 271/570 (47%), Gaps = 40/570 (7%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
SE TLG++L RL Q+ VF +PGDFNL+LLD + G+ G NELNA YAADGY
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGY 61
Query: 102 ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
AR +G+ + TF VG LS LN IAG+Y+E++ ++ +VG P+ + +LHHT+G D
Sbjct: 62 ARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGD 121
Query: 162 FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPT-FS 220
F+ R ++ A++ ++ A ID + T +PVY+ + NL + P
Sbjct: 122 FTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLL 181
Query: 221 REPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280
+ P+ SL P ++ + A PV++A +L D
Sbjct: 182 QTPIDMSLKP--NDAESEKEVIDTILVLIKDAKNPVILADACCSRHDVKAETKKLIDLTQ 239
Query: 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVST-----------AFFSVG----------YSL 319
+ V P KG + E HP + G Y G +S SVG +S
Sbjct: 240 FPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSY 299
Query: 320 LLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPP 379
K + V D + I N F V MK L+ L L + A + Y + VP P
Sbjct: 300 SYKTKNIVEFHSDHMKIRNA-TFPGVQMKFVLQKL---LTAIADAAKGYKPVAVPARTPA 355
Query: 380 KCE--PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSI 437
PL+ ++ + L VIAETG S F + P Q+ +GSI
Sbjct: 356 NAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSI 415
Query: 438 GWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT 493
G++ GATLG A + P+KRVI IGDGS Q+T Q++STM+R G K +F++NN GYT
Sbjct: 416 GFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYT 475
Query: 494 IEVEIHDGP---YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDC 550
IE IH GP YN I+ W++ L+ G T +V E + ++ +
Sbjct: 476 IEKLIH-GPKAQYNEIQGWDHLSLLPTF--GAKDYETHRVATTGEWDKLTQDKSFNDNSK 532
Query: 551 LCFIEVLVHKDDTSKELLEWGSRVSAANSR 580
+ IEV++ D + L+E +A N++
Sbjct: 533 IRMIEVMLPVFDAPQNLVEQAKLTAATNAK 562
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 248 bits (633), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 183/570 (32%), Positives = 271/570 (47%), Gaps = 40/570 (7%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
SE TLG++L RL Q+ VF +PGDFNL+LLD + G+ G NELNA YAADGY
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGY 61
Query: 102 ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
AR +G+ + TF VG LS LN IAG+Y+E++ ++ +VG P+ + +LHHT+G D
Sbjct: 62 ARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGD 121
Query: 162 FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPT-FS 220
F+ R ++ A++ ++ A ID + T +PVY+ + NL + P
Sbjct: 122 FTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLL 181
Query: 221 REPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280
+ P+ SL P ++ + A PV++A +L D
Sbjct: 182 QTPIDMSLKP--NDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQ 239
Query: 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVST-----------AFFSVG----------YSL 319
+ V P KG + E HP + G Y G +S SVG +S
Sbjct: 240 FPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSY 299
Query: 320 LLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPP 379
K + V D + I N F V MK L+ L L + A + Y + VP P
Sbjct: 300 SYKTKNIVEFHSDHMKIRNA-TFPGVQMKFVLQKL---LTNIADAAKGYKPVAVPARTPA 355
Query: 380 KCE--PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSI 437
PL+ ++ + L VIAETG S F + P Q+ +GSI
Sbjct: 356 NAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSI 415
Query: 438 GWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT 493
G++ GATLG A + P+KRVI IGDGS Q+T Q++STM+R G K +F++NN GYT
Sbjct: 416 GFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYT 475
Query: 494 IEVEIHDGP---YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDC 550
I+ IH GP YN I+ W++ L+ G T +V E + ++ +
Sbjct: 476 IQKLIH-GPKAQYNEIQGWDHLSLLPTF--GAKDYETHRVATTGEWDKLTQDKSFNDNSK 532
Query: 551 LCFIEVLVHKDDTSKELLEWGSRVSAANSR 580
+ IEV++ D + L+E +A N++
Sbjct: 533 IRMIEVMLPVFDAPQNLVEQAKLTAATNAK 562
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 248 bits (632), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 185/569 (32%), Positives = 269/569 (47%), Gaps = 38/569 (6%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
SE TLGR+L RL Q+ +F +PGDFNL+LLD++ PG+ G NELNA YAADGY
Sbjct: 2 SEITLGRYLFERLKQVEVQTIFGLPGDFNLSLLDNIYEVPGMRWAGNANELNAAYAADGY 61
Query: 102 ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
AR +G+ + TF VG LS LN IAG+Y+E++ ++ +VG P+ + +LHHT+G D
Sbjct: 62 ARLKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSVSSQAKQLLLHHTLGNGD 121
Query: 162 FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSR 221
F+ R ++ A++ ++ A ID + T +PVY+ + NL + P S
Sbjct: 122 FTVFHRMSSNISETTAMITDINTAPAEIDRCIRTTYVSQRPVYLGLPANLVDLTVPA-SL 180
Query: 222 EPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281
P LS K ++ + +A PV++A A +L D +
Sbjct: 181 LDTPIDLSLKPNDPEAEEEVIENVLQLIKEAKNPVILADACCSRHDAKAETKKLIDLTQF 240
Query: 282 AVAVMPSAKGLVPEHHPHFIGTYWGAVST-----------AFFSVG----------YSLL 320
V P KG + E HP F G Y G +S+ SVG +S
Sbjct: 241 PAFVTPMGKGSIDEKHPRFGGVYVGTLSSPAVKEAVESADLVLSVGALLSDFNTGSFSYS 300
Query: 321 LKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPK 380
K + V D I + F V MK AL K L A + Y + VP +P
Sbjct: 301 YKTKNIVEFHSDYTKIRSA-TFPGVQMK---FALQKLLTKVADAAKGYKPVPVP-SEPEH 355
Query: 381 CEP---KEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSI 437
E PL+ ++ + + L VI ETG S F + P Q+ +GSI
Sbjct: 356 NEAVADSTPLKQEWVWTQVGEFLREGDVVITETGTSAFGINQTHFPNNTYGISQVLWGSI 415
Query: 438 GWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT 493
G++ GATLG A + P+KRVI IGDGS Q+T Q++STM+R G K +F++NN GYT
Sbjct: 416 GFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYT 475
Query: 494 IEVEIH--DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCL 551
IE IH YN I+NW + L+ G +V E + + +
Sbjct: 476 IERLIHGETAQYNCIQNWQHLELLPTF--GAKDYEAVRVSTTGEWNKLTTDEKFQDNTRI 533
Query: 552 CFIEVLVHKDDTSKELLEWGSRVSAANSR 580
IEV++ D L++ +A N++
Sbjct: 534 RLIEVMLPTMDAPSNLVKQAQLTAATNAK 562
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 186/571 (32%), Positives = 272/571 (47%), Gaps = 42/571 (7%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
SE TLG++L RL Q+ VF +PG FNL+LLD + G+ G NELNA YAADGY
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGAFNLSLLDKIYEVEGMRWAGNANELNAAYAADGY 61
Query: 102 ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
AR +G+ + TF VG LS LN IAG+Y+E++ ++ +VG P+ + +LHHT+G D
Sbjct: 62 ARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGD 121
Query: 162 FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPT-FS 220
F+ R ++ A++ ++ A ID + T +PVY+ + NL + P
Sbjct: 122 FTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLL 181
Query: 221 REPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVK-PVLVAGPKMRVAKACNAFVELADAC 279
+ P+ SL P N+ L+K K PV++A +L D
Sbjct: 182 QTPIDMSLKP---NDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLT 238
Query: 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVST-----------AFFSVG----------YS 318
+ V P KG + E HP + G Y G +S SVG +S
Sbjct: 239 QFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFS 298
Query: 319 LLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQP 378
K + V D + I N F V MK L+ L L + A + Y + VP P
Sbjct: 299 YSYKTKNIVEFHSDHMKIRNA-TFPGVQMKFVLQKL---LTAIADAAKGYKPVAVPARTP 354
Query: 379 PKCE--PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGS 436
PL+ ++ + L VIAETG S F + P Q+ +GS
Sbjct: 355 ANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGS 414
Query: 437 IGWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
IG++ GATLG A + P+KRVI IGDGS Q+T Q++STM+R G K +F++NN GY
Sbjct: 415 IGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGY 474
Query: 493 TIEVEIHDGP---YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKD 549
TIE IH GP YN I+ W++ L+ G T +V E + ++ +
Sbjct: 475 TIEKLIH-GPKAQYNEIQGWDHLSLLPTF--GAKDYETHRVATTGEWDKLTQDKSFNDNS 531
Query: 550 CLCFIEVLVHKDDTSKELLEWGSRVSAANSR 580
+ IEV++ D + L+E +A N++
Sbjct: 532 KIRMIEVMLPVFDAPQNLVEQAKLTAATNAK 562
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 180/559 (32%), Positives = 266/559 (47%), Gaps = 40/559 (7%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
SE TLG++L RL Q+ VF +PGDFNL+LLD + G+ G NELNA YAADGY
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGY 61
Query: 102 ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
AR +G+ + TF VG LS LN IAG+Y+E++ ++ +VG P+ + +LHHT+G D
Sbjct: 62 ARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGD 121
Query: 162 FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPT-FS 220
F+ R ++ A++ ++ A ID + T +PVY+ + NL + P
Sbjct: 122 FTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLL 181
Query: 221 REPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280
+ P+ SL P ++ + A PV++A +L D
Sbjct: 182 QTPIDMSLKP--NDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQ 239
Query: 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVST-----------AFFSVG----------YSL 319
+ V P KG + E HP + G Y G +S SVG +S
Sbjct: 240 FPAFVTPMGKGSISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSY 299
Query: 320 LLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPP 379
K + V D + I N F V MK L+ L L + A + Y + VP P
Sbjct: 300 SYKTKNIVEFHSDHMKIRNA-TFPGVQMKFVLQKL---LTNIADAAKGYKPVAVPARTPA 355
Query: 380 KCE--PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSI 437
PL+ ++ + L VIAETG S F + P Q+ +GSI
Sbjct: 356 NAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSI 415
Query: 438 GWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT 493
G++ GATLG A + P+KRVI IGDGS Q+T Q++STM+R G K +F++NN GYT
Sbjct: 416 GFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYT 475
Query: 494 IEVEIHDGP---YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDC 550
IE IH GP YN I+ W++ L+ G T +V E + ++ +
Sbjct: 476 IEKLIH-GPKAQYNEIQGWDHLSLLPTF--GAKDYETHRVATTGEWDKLTQDKSFNDNSK 532
Query: 551 LCFIEVLVHKDDTSKELLE 569
+ IE+++ D + L++
Sbjct: 533 IRMIEIMLPVFDAPQNLVK 551
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 243 bits (619), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 172/505 (34%), Positives = 246/505 (48%), Gaps = 38/505 (7%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
SE TLG++L RL Q+ VF +PGDFNL+LLD + G+ G NELNA YAADGY
Sbjct: 1 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGY 60
Query: 102 ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
AR +G+ + TF VG LS LN IAG+Y+E++ ++ +VG P+ + +LHHT+G D
Sbjct: 61 ARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGD 120
Query: 162 FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPT-FS 220
F+ R ++ A++ ++ A ID + T +PVY+ + NL + P
Sbjct: 121 FTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLL 180
Query: 221 REPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280
+ P+ SL P ++ + A PV++A +L D
Sbjct: 181 QTPIDMSLKP--NDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQ 238
Query: 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVST-----------AFFSVG----------YSL 319
+ V P KG + E HP + G Y G +S SVG +S
Sbjct: 239 FPAFVTPMGKGSISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSY 298
Query: 320 LLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPP 379
K + V D + I N F V MK L+ L L + A + Y + VP P
Sbjct: 299 SYKTKNIVEFHSDHMKIRNA-TFPGVQMKFVLQKL---LTNIADAAKGYKPVAVPARTPA 354
Query: 380 KCE--PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSI 437
PL+ ++ + L VIAETG S F + P Q+ +GSI
Sbjct: 355 NAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSI 414
Query: 438 GWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT 493
G++ GATLG A + P+KRVI IGDGS Q+T Q++STM+R G K +F++NN GYT
Sbjct: 415 GFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYT 474
Query: 494 IEVEIHDGP---YNVIKNWNYTGLV 515
IE IH GP YN I+ W++ L+
Sbjct: 475 IEKLIH-GPKAQYNEIQGWDHLSLL 498
>pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBF|B Chain B, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBG|A Chain A, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
pdb|2VBG|B Chain B, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
Length = 570
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 173/560 (30%), Positives = 267/560 (47%), Gaps = 42/560 (7%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+G +L RL ++G ++F VPGD+NL LD +I+ + IG NELNA Y ADGYAR+
Sbjct: 26 TVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYART 85
Query: 105 RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ 164
+ A + TF VG LS +N +AG+Y+ENLP++ IVG P S + +HHT+ DF
Sbjct: 86 KKAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKH 145
Query: 165 ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIP--HPTFSRE 222
++ + VT + ++ E+A ID +S LKE KPVYI++ ++ A P S E
Sbjct: 146 FMKMHEPVTAARTLL-TAENATYEIDRVLSQLLKERKPVYINLPVDVAAAKAEKPALSLE 204
Query: 223 PVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYA 282
S + + ++ L L A KPV++AG ++ +
Sbjct: 205 KE--SSTTNTTEQVILSKIEES----LKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLP 258
Query: 283 VAVMPSAKGLVPEHHPHFIGTYWGAVS---------TAFF-----------SVG-YSLLL 321
+ + K V E P F+G Y G +S +A F S G ++ L
Sbjct: 259 ITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTHHL 318
Query: 322 KKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKC 381
+ K + L D +I N V DF +S + YE Y+ +
Sbjct: 319 DENKMISLNIDEGIIFN----KVVEDFDFRAVVSSLSELKGIEYEGQ---YIDKQYEEFI 371
Query: 382 EPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSV 441
PL + L+Q ++ + S ++AE G S+F + L + Q +GSIG++
Sbjct: 372 PSSAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGASTIFLKSNSRFIGQPLWGSIGYTF 431
Query: 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDG 501
A LG + E R + IGDGS Q+T Q++ +R I F+INN GYT+E EIH G
Sbjct: 432 PAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIH-G 490
Query: 502 P---YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLV 558
P YN I WNY+ L + E + + V E E + ++ A + + +IE+++
Sbjct: 491 PTQSYNDIPMWNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQA-DVNRMYWIELVL 549
Query: 559 HKDDTSKELLEWGSRVSAAN 578
K+D K L + G + N
Sbjct: 550 EKEDAPKLLKKMGKLFAEQN 569
>pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|B Chain B, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|C Chain C, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|D Chain D, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
Length = 552
Score = 231 bits (589), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 163/539 (30%), Positives = 256/539 (47%), Gaps = 39/539 (7%)
Query: 49 HLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVG 108
+L RL GA +F VPGD+NL LDH+I P + +GC NELNA YAADGYAR +G
Sbjct: 10 YLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFA 69
Query: 109 ACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 168
A + TF VG LS +N IAG+Y+E++P++ IVG P + +LHHT+G +F
Sbjct: 70 ALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHM 129
Query: 169 FQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPV-PFS 227
+ +T QAV+ +E ID ++T L+E +P Y+ LPA + PV +
Sbjct: 130 SEPITVAQAVLTEQNACYE-IDRVLTTMLRERRPGYLM----LPADVAKKAATPPVNALT 184
Query: 228 LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287
++ L L + + L+A + +A + A A M
Sbjct: 185 HKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATML 244
Query: 288 SAKGLVPEHHPHFIGTYWGAVSTA---------------------FFSVGYSLLLKKEKA 326
KG+ E F GTY G+ ST + G++ L +
Sbjct: 245 MGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQT 304
Query: 327 VILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEP 386
+ +QP + + F + M ++ L + K + A + G P +P
Sbjct: 305 IEVQPHAARVGD-VWFTGIPMNQAIETLVELCKQHVHA----GLMSSSSGAIPFPQPDGS 359
Query: 387 LRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLG 446
L ++ +Q + ++A+ G S F L+LP + Q +GSIG+++ A G
Sbjct: 360 LTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFG 419
Query: 447 YAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYN 504
+ P +RVI GDG+ Q+T Q++ +MLR Q II ++NN GYT+E IH + YN
Sbjct: 420 AQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 479
Query: 505 VIKNWNYTGLVDAIH-NGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDD 562
I WN+T + A+ + + +CW +V E+L + +E ++ L IEV++ K D
Sbjct: 480 DIALWNWTHIPQALSLDPQSECW--RVSEAEQLADVLEKVAHHER--LSLIEVMLPKAD 534
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 132/562 (23%), Positives = 217/562 (38%), Gaps = 44/562 (7%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
S L L R L GA +F +PGDF L L L +E G+AAD
Sbjct: 19 SHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAA 78
Query: 102 AR-SRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160
AR S +G VT+ G +++NA+AGAY+E P++ I G P + + +LHH
Sbjct: 79 ARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTL 138
Query: 161 DFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFS 220
D + + F+ +T QA +++ A I + A +S+PVY+ IP +
Sbjct: 139 D--TQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQSRPVYLE-------IPRNMVN 189
Query: 221 REPVPFSLSPKLS-NEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
E P P + L + A PVL+ ++R ELA
Sbjct: 190 AEVEPVGDDPAWPVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRL 249
Query: 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAV-----------STAFFSVGYSL----LLKKE 324
G V +GL+ + +GTY G S F +G L +
Sbjct: 250 GVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQ 309
Query: 325 KAVILQP-----DRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPP 379
+ + L+ DR V + + + + AL +RL + P G
Sbjct: 310 RKIDLRKTIHAFDRAVTLGYHTYADIPLAGLVDALLERLPPSDRTTRGKEPHAYPTGLQA 369
Query: 380 KCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGW 439
EP P+ + + + A+ GD F + G Y +G+
Sbjct: 370 DGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTAMDM---IDAGLMAPGYYAGMGF 426
Query: 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH 499
V A +G KR++ +GDG+FQ+T ++ R G I+ L NN + +
Sbjct: 427 GVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRTFQ 486
Query: 500 -DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLV 558
+ +N + +W + + + G+G +V EL A++ A + IE ++
Sbjct: 487 PESAFNDLDDWRFADMAAGM-GGDG----VRVRTRAELKAALDKAFA-TRGRFQLIEAMI 540
Query: 559 HK---DDTSKELLEWGSRVSAA 577
+ DT ++ R+ AA
Sbjct: 541 PRGVLSDTLARFVQGQKRLHAA 562
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 179/471 (38%), Gaps = 56/471 (11%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVT 113
L + G VF PG L L + I E ADGYA++ A +
Sbjct: 12 LRRQGIDTVFGNPGSNELPFLKDFPED--FRYILALQEACVVGIADGYAQASRKPAFINL 69
Query: 114 FTVGGL-SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV 172
+ G + + A++ A++ + PLI G G +L + D + R V
Sbjct: 70 HSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNV----DAANLPRPL--V 123
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA---CNLPAIP--HPTFSREPVPFS 227
+ E H + ++ PVY+SV + A P H F R S
Sbjct: 124 KWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRH---VS 180
Query: 228 LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287
S +L+++ LN A P +V GP + A A V LA+ V V P
Sbjct: 181 SSVRLNDQ-----DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAP 235
Query: 288 SA-KGLVPEHHPHFIGTY-WGAVSTAFFSVGYSLLL----------KKEKAVILQP---- 331
SA + P HP F G G + + G+ ++L + + L+P
Sbjct: 236 SAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRL 295
Query: 332 -----DRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKE- 385
D + A P G ++ D + A++ L + E+ ++ +P K +
Sbjct: 296 ISVTCDPLEAARAP-MGDAIVAD-IGAMASALAN--LVEESSRQLPTAAPEPAKVDQDAG 351
Query: 386 PLRVNVLFQHIQKMLSSETAVIAE----TGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSV 441
L +F + M + E T W Q+L + Y F G +G+++
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMW---QRLNMRNPGSYYF-CAAGGLGFAL 407
Query: 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
A +G + PE++VIA IGDGS + + T + TI ++NNG Y
Sbjct: 408 PAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY 458
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 179/471 (38%), Gaps = 56/471 (11%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVT 113
L + G VF PG L L + I E ADGYA++ A +
Sbjct: 12 LRRQGIDTVFGNPGSNELPFLKDFPED--FRYILALQEACVVGIADGYAQASRKPAFINL 69
Query: 114 FTVGGL-SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV 172
+ G + + A++ A++ + PLI G G +L + D + R V
Sbjct: 70 HSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNV----DAANLPRPL--V 123
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA---CNLPAIP--HPTFSREPVPFS 227
+ E H + ++ PVY+SV + A P H F R S
Sbjct: 124 KWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRH---VS 180
Query: 228 LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287
S +L+++ LN A P +V GP + A A V LA+ V V P
Sbjct: 181 SSVRLNDQ-----DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAP 235
Query: 288 SA-KGLVPEHHPHFIGTY-WGAVSTAFFSVGYSLLL----------KKEKAVILQP---- 331
SA + P HP F G G + + G+ ++L + + L+P
Sbjct: 236 SAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRL 295
Query: 332 -----DRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKE- 385
D + A P G ++ D + A++ L + E+ ++ +P K +
Sbjct: 296 ISVTCDPLEAARAP-MGDAIVAD-IGAMASALAN--LVEESSRQLPTAAPEPAKVDQDAG 351
Query: 386 PLRVNVLFQHIQKMLSSETAVIAE----TGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSV 441
L +F + M + E T W Q+L + Y F G +G+++
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMW---QRLNMRNPGSYYF-CAAGGLGFAL 407
Query: 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
A +G + PE++VIA IGDGS + + T + TI ++NNG Y
Sbjct: 408 PAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY 458
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 179/471 (38%), Gaps = 56/471 (11%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVT 113
L + G VF PG L L + I E ADGYA++ A +
Sbjct: 12 LRRQGIDTVFGNPGSNQLPFLKDFPED--FRYILALQEACVVGIADGYAQASRKPAFINL 69
Query: 114 FTVGGL-SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV 172
+ G + + A++ A++ + PLI G G +L + D + R V
Sbjct: 70 HSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNV----DAANLPRPL--V 123
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA---CNLPAIP--HPTFSREPVPFS 227
+ E H + ++ PVY+SV + A P H F R S
Sbjct: 124 KWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRH---VS 180
Query: 228 LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287
S +L+++ LN A P +V GP + A A V LA+ V V P
Sbjct: 181 SSVRLNDQ-----DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAP 235
Query: 288 SA-KGLVPEHHPHFIGTY-WGAVSTAFFSVGYSLLL----------KKEKAVILQP---- 331
SA + P HP F G G + + G+ ++L + + L+P
Sbjct: 236 SAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRL 295
Query: 332 -----DRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKE- 385
D + A P G ++ D + A++ L + E+ ++ +P K +
Sbjct: 296 ISVTCDPLEAARAP-MGDAIVAD-IGAMASALAN--LVEESSRQLPTAAPEPAKVDQDAG 351
Query: 386 PLRVNVLFQHIQKMLSSETAVIAE----TGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSV 441
L +F + M + E T W Q+L + Y F G +G+++
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMW---QRLNMRNPGSYYF-CAAGGLGFAL 407
Query: 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
A +G + PE++VIA IGDGS + + T + TI ++NNG Y
Sbjct: 408 PAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY 458
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 179/471 (38%), Gaps = 56/471 (11%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVT 113
L + G VF PG L L + I E ADGYA++ A +
Sbjct: 11 LRRQGIDTVFGNPGSNELPFLKDFPED--FRYILALQEACVVGIADGYAQASRKPAFINL 68
Query: 114 FTVGGL-SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV 172
+ G + + A++ A++ + PLI G G +L + D + R V
Sbjct: 69 HSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNV----DAANLPRPL--V 122
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA---CNLPAIP--HPTFSREPVPFS 227
+ E H + ++ PVY+SV + A P H F R S
Sbjct: 123 KWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRH---VS 179
Query: 228 LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287
S +L+++ LN A P +V GP + A A V LA+ V V P
Sbjct: 180 SSVRLNDQ-----DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAP 234
Query: 288 SA-KGLVPEHHPHFIGTY-WGAVSTAFFSVGYSLLL----------KKEKAVILQP---- 331
SA + P HP F G G + + G+ ++L + + L+P
Sbjct: 235 SAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRL 294
Query: 332 -----DRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKE- 385
D + A P G ++ D + A++ L + E+ ++ +P K +
Sbjct: 295 ISVTCDPLEAARAP-MGDAIVAD-IGAMASALAN--LVEESSRQLPTAAPEPAKVDQDAG 350
Query: 386 PLRVNVLFQHIQKMLSSETAVIAE----TGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSV 441
L +F + M + E T W Q+L + Y F G +G+++
Sbjct: 351 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMW---QRLNMRNPGSYYF-CAAGGLGFAL 406
Query: 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
A +G + PE++VIA IGDGS + + T + TI ++NNG Y
Sbjct: 407 PAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY 457
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 179/471 (38%), Gaps = 56/471 (11%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVT 113
L + G VF PG L L + I E ADGYA++ A +
Sbjct: 12 LRRQGIDTVFGNPGSNELPFLKDFPED--FRYILALQEACVVGIADGYAQASRKPAFINL 69
Query: 114 FTVGGL-SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV 172
+ G + + A++ A++ + PLI G G +L + D + R V
Sbjct: 70 HSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNV----DAANLPRPL--V 123
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA---CNLPAIP--HPTFSREPVPFS 227
+ E H + ++ PVY+SV + A P H F R S
Sbjct: 124 KWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRH---VS 180
Query: 228 LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287
S +L+++ LN A P +V GP + A A V LA+ V V P
Sbjct: 181 SSVRLNDQ-----DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAP 235
Query: 288 SA-KGLVPEHHPHFIGTY-WGAVSTAFFSVGYSLLL----------KKEKAVILQP---- 331
SA + P HP F G G + + G+ ++L + + L+P
Sbjct: 236 SAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRL 295
Query: 332 -----DRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKE- 385
D + A P G ++ D + A++ L + E+ ++ +P K +
Sbjct: 296 ISVTCDPLEAARAP-MGDAIVAD-IGAMASALAN--LVEESSRQLPTAAPEPAKVDQDAG 351
Query: 386 PLRVNVLFQHIQKMLSSETAVIAE----TGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSV 441
L +F + M + E T W Q+L + Y F G +G+++
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMW---QRLNMRNPGSYYF-CAAGGLGFAL 407
Query: 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
A +G + PE++VIA IGDGS + + T + TI ++NNG Y
Sbjct: 408 PAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY 458
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 111/472 (23%), Positives = 178/472 (37%), Gaps = 58/472 (12%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVT 113
L + G VF PG L L + I E ADGYA++ A +
Sbjct: 11 LRRQGIDTVFGNPGSNELPFLKDFPED--FRYILALQEACVVGIADGYAQASRKPAFINL 68
Query: 114 FTVGGL-SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV 172
+ G + + A++ A++ + PLI G G +L + D + R V
Sbjct: 69 HSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNV----DAANLPRPL--V 122
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA---CNLPAIP--HPTFSREPVPFS 227
+ E H + ++ PVY+SV + A P H F R S
Sbjct: 123 KWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRH---VS 179
Query: 228 LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287
S +L+++ LN A P +V GP + A A V LA+ V V P
Sbjct: 180 SSVRLNDQ-----DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAP 234
Query: 288 SA-KGLVPEHHPHFIGTY-WGAVSTAFFSVGYSLLL----------KKEKAVILQPDRVV 335
SA + P HP F G G + + G+ ++L + + L+P +
Sbjct: 235 SAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRL 294
Query: 336 IANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEG--QPPKCEPKEPLRVN--- 390
I+ C ++ + + ++ A + V E Q P P EP +V+
Sbjct: 295 IS----VTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAP-EPAKVDQDA 349
Query: 391 ------VLFQHIQKMLSSETAVIAE----TGDSWFNCQKLKLPKGCGYEFQMQYGSIGWS 440
+F + M + E T W Q+L + Y F G +G++
Sbjct: 350 GRLHPETVFDTLNDMAPENAIYLNESTSTTAQMW---QRLNMRNPGSYYF-CAAGGLGFA 405
Query: 441 VGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
+ A +G + PE++VIA IGDGS + + T + TI ++NNG Y
Sbjct: 406 LPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY 457
>pdb|2FWN|A Chain A, Phosphorylation Of An Active Site Serine In A Thdp-
Dependent Enzyme By Phosphonate Inactivation
Length = 528
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 110/471 (23%), Positives = 180/471 (38%), Gaps = 56/471 (11%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVT 113
L + G VF PG L L + I E ADGYA++ A +
Sbjct: 12 LRRQGIDTVFGNPGXNELPFLKDFPED--FRYILALQEACVVGIADGYAQASRKPAFINL 69
Query: 114 FTVGGL-SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV 172
+ G + + A++ A++ + PLI G G +L + + + + L +
Sbjct: 70 HSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTN-VDAANLPRPLVKWSYE 128
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA---CNLPAIP--HPTFSREPVPFS 227
A E H + ++ PVY+SV + A P H F R S
Sbjct: 129 PASAA-----EVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRH---VS 180
Query: 228 LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287
S +L+++ LN A P +V GP + A A V LA+ V V P
Sbjct: 181 SSVRLNDQ-----DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAP 235
Query: 288 SA-KGLVPEHHPHFIGTY-WGAVSTAFFSVGYSLLL----------KKEKAVILQP---- 331
SA + P HP F G G + + G+ ++L + + L+P
Sbjct: 236 SAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRL 295
Query: 332 -----DRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKE- 385
D + A P G ++ D + A++ L + E+ ++ +P K +
Sbjct: 296 ISVTCDPLEAARAP-MGDAIVAD-IGAMASALAN--LVEESSRQLPTAAPEPAKVDQDAG 351
Query: 386 PLRVNVLFQHIQKMLSSETAVIAE----TGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSV 441
L +F + M + E T W Q+L + Y F G +G+++
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMW---QRLNMRNPGSYYF-CAAGGLGFAL 407
Query: 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
A +G + PE++VIA IGDGS + + T + TI ++NNG Y
Sbjct: 408 PAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY 458
>pdb|2FN3|A Chain A, High Resolution Structure Of S26a Mutant Of Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamine Thiazolone Diphosphate
Length = 528
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 111/472 (23%), Positives = 178/472 (37%), Gaps = 58/472 (12%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVT 113
L + G VF PG L L + I E ADGYA++ A +
Sbjct: 12 LRRQGIDTVFGNPGANELPFLKDFPED--FRYILALQEACVVGIADGYAQASRKPAFINL 69
Query: 114 FTVGGL-SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV 172
+ G + + A++ A++ + PLI G G +L + D + R V
Sbjct: 70 HSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNV----DAANLPRPL--V 123
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA---CNLPAIP--HPTFSREPVPFS 227
+ E H + ++ PVY+SV + A P H F R S
Sbjct: 124 KWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRH---VS 180
Query: 228 LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287
S +L+++ LN A P +V GP + A A V LA+ V V P
Sbjct: 181 SSVRLNDQ-----DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAP 235
Query: 288 SA-KGLVPEHHPHFIGTY-WGAVSTAFFSVGYSLLL----------KKEKAVILQPDRVV 335
SA + P HP F G G + + G+ ++L + + L+P +
Sbjct: 236 SAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRL 295
Query: 336 IANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEG--QPPKCEPKEPLRVN--- 390
I+ C ++ + + ++ A + V E Q P P EP +V+
Sbjct: 296 IS----VTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAP-EPAKVDQDA 350
Query: 391 ------VLFQHIQKMLSSETAVIAE----TGDSWFNCQKLKLPKGCGYEFQMQYGSIGWS 440
+F + M + E T W Q+L + Y F G +G++
Sbjct: 351 GRLHPETVFDTLNDMAPENAIYLNESTSTTAQMW---QRLNMRNPGSYYF-CAAGGLGFA 406
Query: 441 VGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
+ A +G + PE++VIA IGDGS + + T + TI ++NNG Y
Sbjct: 407 LPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY 458
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 111/471 (23%), Positives = 179/471 (38%), Gaps = 56/471 (11%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVT 113
L + G VF PG L L + I E ADGYA++ A +
Sbjct: 12 LRRQGIDTVFGNPGSNALPFLKDFPED--FRYILALQEACVVGIADGYAQASRKPAFINL 69
Query: 114 FTVGGL-SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV 172
+ G + + A++ A++ + PLI G G +L + D + R V
Sbjct: 70 HSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNV----DAANLPRPL--V 123
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA---CNLPAIP--HPTFSREPVPFS 227
+ E H + ++ PVY+SV + A P H F R S
Sbjct: 124 KWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRH---VS 180
Query: 228 LSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287
S +L+++ LN A P +V GP + A A V LA+ V V P
Sbjct: 181 SSVRLNDQ-----DLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAP 235
Query: 288 SA-KGLVPEHHPHFIGTY-WGAVSTAFFSVGYSLLL----------KKEKAVILQP---- 331
SA + P HP F G G + + G+ ++L + + L+P
Sbjct: 236 SAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRL 295
Query: 332 -----DRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKE- 385
D + A P G ++ D + A++ L + E+ ++ +P K +
Sbjct: 296 ISVTCDPLEAARAP-MGDAIVAD-IGAMASALAN--LVEESSRQLPTAAPEPAKVDQDAG 351
Query: 386 PLRVNVLFQHIQKMLSSETAVIAE----TGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSV 441
L +F + M + E T W Q+L + Y F G +G+++
Sbjct: 352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMW---QRLNMRNPGSYYF-CAAGGLGFAL 407
Query: 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
A +G + PE++VIA IGDGS + + T + TI ++NNG Y
Sbjct: 408 PAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY 458
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 118/511 (23%), Positives = 201/511 (39%), Gaps = 71/511 (13%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-G 108
L L + G VF+ PG ++ + L + + +E +AA+GYARS G G
Sbjct: 17 LVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPG 76
Query: 109 ACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 168
C+ T G ++++ +A A +++PL+ I G GT+ I +
Sbjct: 77 ICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPI--------VEV 128
Query: 169 FQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNLP---AIPH-PTFSREP 223
+++T + +V ++ED +I+ A A PV + V ++ AIP+ R P
Sbjct: 129 TRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPNWEQAMRLP 188
Query: 224 VPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVL-VAGPKMRVAKACNAFVELADACGYA 282
S PK + L ++++ KPVL V G + + FVEL G
Sbjct: 189 GYMSRMPKPPEDSHL----EQIVRLISESKKPVLYVGGGCLNSSDELGRFVEL---TGIP 241
Query: 283 VAVMPSAKGLVP---EHHPHFIGTYWGAVSTAFFSVGYSLLL------------------ 321
VA G P E H +G + G V A ++V +S LL
Sbjct: 242 VATTLMGLGSYPXDDELSLHMLGMH-GTV-YANYAVEHSDLLLAFGVRFDDRVTGKLEAF 299
Query: 322 -KKEKAVILQPDRVVIANG--PAFG-CVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQ 377
+ K V + D I P C +K L+ ++K L++ + ++ E
Sbjct: 300 ASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELN 359
Query: 378 PPKCEPKEPLRVNVLF-----QHIQKMLSSET--AVIAETG--------DSWFNCQKLKL 422
K K PL Q+ K+L T I TG ++N +K +
Sbjct: 360 VQKQ--KFPLSFKTFGEAIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQFYNYKKPRQ 417
Query: 423 PKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKT 482
G M +G + A +G + + P+ V+ GDGSF + Q+++T+
Sbjct: 418 WLSSGGLGAMGFG-----LPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPV 472
Query: 483 IIFLINNGGYTIEVEIHDGPYNVIKNWNYTG 513
+ L+NN + ++ D Y + + G
Sbjct: 473 KVLLLNNQHLGMVMQWEDRFYKANRAHTFLG 503
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 118/511 (23%), Positives = 201/511 (39%), Gaps = 71/511 (13%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-G 108
L L + G VF+ PG ++ + L + + +E +AA+GYARS G G
Sbjct: 18 LVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPG 77
Query: 109 ACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 168
C+ T G ++++ +A A +++PL+ I G GT+ I +
Sbjct: 78 ICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPI--------VEV 129
Query: 169 FQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNLP---AIPH-PTFSREP 223
+++T + +V ++ED +I+ A A PV + V ++ AIP+ R P
Sbjct: 130 TRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPNWEQAMRLP 189
Query: 224 VPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVL-VAGPKMRVAKACNAFVELADACGYA 282
S PK + L ++++ KPVL V G + + FVEL G
Sbjct: 190 GYMSRMPKPPEDSHL----EQIVRLISESKKPVLYVGGGCLNSSDELGRFVEL---TGIP 242
Query: 283 VAVMPSAKGLVP---EHHPHFIGTYWGAVSTAFFSVGYSLLL------------------ 321
VA G P E H +G + G V A ++V +S LL
Sbjct: 243 VASTLMGLGSYPXDDELSLHMLGMH-GTV-YANYAVEHSDLLLAFGVRFDDRVTGKLEAF 300
Query: 322 -KKEKAVILQPDRVVIANG--PAFG-CVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQ 377
+ K V + D I P C +K L+ ++K L++ + ++ E
Sbjct: 301 ASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELN 360
Query: 378 PPKCEPKEPLRVNVLF-----QHIQKMLSSET--AVIAETG--------DSWFNCQKLKL 422
K K PL Q+ K+L T I TG ++N +K +
Sbjct: 361 VQKQ--KFPLSFKTFGEAIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQFYNYKKPRQ 418
Query: 423 PKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKT 482
G M +G + A +G + + P+ V+ GDGSF + Q+++T+
Sbjct: 419 WLSSGGLGAMGFG-----LPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPV 473
Query: 483 IIFLINNGGYTIEVEIHDGPYNVIKNWNYTG 513
+ L+NN + ++ D Y + + G
Sbjct: 474 KVLLLNNQHLGMVMQWEDRFYKANRAHTFLG 504
>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
Length = 573
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 97/461 (21%), Positives = 170/461 (36%), Gaps = 71/461 (15%)
Query: 82 GLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVG 140
G++ + +E AG AAD AR G AC T G ++ IA + + P+I +
Sbjct: 48 GIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAA 107
Query: 141 GPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHE---LIDTAVSTAL 197
S+D N D Q L V L+ HE L+D+AV+ A+
Sbjct: 108 QSESHDIFPN----------DTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAM 157
Query: 198 KES-KPVYISVACNL--------PAIPHPTFSREPVPFSLSPKLSNEMGLXXXXXXXXXF 248
E P +IS+ +L +P+P + P + G
Sbjct: 158 TEPVGPSFISLPVDLLGSSEGIDTTVPNPPANTPAKPVGVVAD-----GWQKAADQAAAL 212
Query: 249 LNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWG-- 306
L +A PVLV G + A A LA+ V AKG++P H G G
Sbjct: 213 LAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYM 272
Query: 307 -------AVSTAFFSVGYSLLLKKEKAVILQP-------DRVVIANGPAFGCV------- 345
A+ T F V L + + A L+P ++ + P +
Sbjct: 273 DGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPD 332
Query: 346 --LMKDFLKALSKRLKSNTTAY--ENYH-----RIYVPEGQPPKCEPKEPLRVNVLFQHI 396
++ D L A + ++ T ++ + H R + E ++ +RV+ + +
Sbjct: 333 VDVVTDVL-AFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVIDSM 391
Query: 397 QKMLSS-----ETAVIAETGDSWFNCQKLKLPKG---CGYEFQMQYGSIGWSVGATLGYA 448
++ E ++++ G +F + + G+ S G+ + A +G
Sbjct: 392 NTVMEEAAEPGEGTIVSDIG--FFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQ 449
Query: 449 QSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
+ P++ GDG F + D+ T+ R + ++NN
Sbjct: 450 MARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNN 490
>pdb|1POW|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POW|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 106/548 (19%), Positives = 205/548 (37%), Gaps = 69/548 (12%)
Query: 58 GATDVFSVPGDFNLTLLDHLIAEPG-LNLIGCCNELNAGYAADGYARSRG-VGACVVTFT 115
G ++ +PG +++D L AE ++ I +E AA A+ G +G C +
Sbjct: 17 GVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG 76
Query: 116 VGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR---CFQTV 172
GG ++N + A +++P++ ++G +GT + T QE+ + V
Sbjct: 77 PGGTHLMNGLYDAREDHVPVLALIG-----QFGTTGMNMDTF------QEMNENPIYADV 125
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKL 232
Y N +ID A+ A + + +LP P S L
Sbjct: 126 ADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDWYASANSYQTPL 185
Query: 233 SNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGL 292
E + L A +P++ G R KA +L+ + AKG+
Sbjct: 186 LPEPDVQAVTRLTQTLL-AAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMSTYPAKGI 242
Query: 293 VPEHHPHFIGTY--------------------------WGAVSTAFFSVGYSLLLKKEKA 326
V + +P ++G+ + VS AF + Y L + + A
Sbjct: 243 VADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPA 302
Query: 327 VI---LQPDRVVIANG-PAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCE 382
+ + D V+A+ +L + + + ++N +N+ R Y+ E
Sbjct: 303 KLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNW-RAYL-----ASLE 356
Query: 383 PKE--PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQK-LKLPKGCGYEFQMQYGSIGW 439
K+ PL+ + + + K+ + + GD N + LKL + + ++G
Sbjct: 357 DKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGV 416
Query: 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT-IEVEI 498
+ + + PE++V GDG +T QD++T ++ I + N Y I+ E
Sbjct: 417 GIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQ 476
Query: 499 HDGPYN-----VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCF 553
D N + +++ + D +H +V E+L + E A +
Sbjct: 477 EDTNQNDFIGVEFNDIDFSKIADGVH-----MQAFRVNKIEQLPDVFEQAKAIAQHEPVL 531
Query: 554 IEVLVHKD 561
I+ ++ D
Sbjct: 532 IDAVITGD 539
>pdb|2EZ4|A Chain A, Pyruvate Oxidase Variant F479w
pdb|2EZ4|B Chain B, Pyruvate Oxidase Variant F479w
pdb|2EZ8|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ8|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Lactyl-Thiamin Diphosphate
pdb|2EZ9|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZ9|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate Analogue 2-Phosphonolactyl-Thiamin
Diphosphate
pdb|2EZT|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZT|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Hydroxyethyl-Thiamin Diphosphate
pdb|2EZU|A Chain A, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
pdb|2EZU|B Chain B, Pyruvate Oxidase Variant F479w In Complex With Reaction
Intermediate 2-Acetyl-Thiamin Diphosphate
Length = 603
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 106/548 (19%), Positives = 205/548 (37%), Gaps = 69/548 (12%)
Query: 58 GATDVFSVPGDFNLTLLDHLIAEPG-LNLIGCCNELNAGYAADGYARSRG-VGACVVTFT 115
G ++ +PG +++D L AE ++ I +E AA A+ G +G C +
Sbjct: 25 GVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG 84
Query: 116 VGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR---CFQTV 172
GG ++N + A +++P++ ++G +GT + T QE+ + V
Sbjct: 85 PGGTHLMNGLYDAREDHVPVLALIG-----QFGTTGMNMDTF------QEMNENPIYADV 133
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKL 232
Y N +ID A+ A + + +LP P S L
Sbjct: 134 ADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDWYASANSYQTPL 193
Query: 233 SNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGL 292
E + L A +P++ G R KA +L+ + AKG+
Sbjct: 194 LPEPDVQAVTRLTQTLL-AAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMSTYPAKGI 250
Query: 293 VPEHHPHFIGTY--------------------------WGAVSTAFFSVGYSLLLKKEKA 326
V + +P ++G+ + VS AF + Y L + + A
Sbjct: 251 VADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPA 310
Query: 327 VI---LQPDRVVIANG-PAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCE 382
+ + D V+A+ +L + + + ++N +N+ R Y+ E
Sbjct: 311 KLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNW-RAYL-----ASLE 364
Query: 383 PKE--PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQK-LKLPKGCGYEFQMQYGSIGW 439
K+ PL+ + + + K+ + + GD N + LKL + + ++G
Sbjct: 365 DKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGV 424
Query: 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT-IEVEI 498
+ + + PE++V GDG +T QD++T ++ I + N Y I+ E
Sbjct: 425 GIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGWIKDEQ 484
Query: 499 HDGPYN-----VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCF 553
D N + +++ + D +H +V E+L + E A +
Sbjct: 485 EDTNQNDFIGVEFNDIDFSKIADGVH-----MQAFRVNKIEQLPDVFEQAKAIAQHEPVL 539
Query: 554 IEVLVHKD 561
I+ ++ D
Sbjct: 540 IDAVITGD 547
>pdb|4FEE|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEE|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal B
pdb|4FEG|A Chain A, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
pdb|4FEG|B Chain B, High-Resolution Structure Of Pyruvate Oxidase In Complex
With Reaction Intermediate 2-Hydroxyethyl-Thiamin
Diphosphate Carbanion-Enamine, Crystal A
Length = 603
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 106/548 (19%), Positives = 205/548 (37%), Gaps = 69/548 (12%)
Query: 58 GATDVFSVPGDFNLTLLDHLIAEPG-LNLIGCCNELNAGYAADGYARSRG-VGACVVTFT 115
G ++ +PG +++D L AE ++ I +E AA A+ G +G C +
Sbjct: 25 GVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG 84
Query: 116 VGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR---CFQTV 172
GG ++N + A +++P++ ++G +GT + T QE+ + V
Sbjct: 85 PGGTHLMNGLYDAREDHVPVLALIG-----QFGTTGMNMDTF------QEMNENPIYADV 133
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKL 232
Y N +ID A+ A + + +LP P S L
Sbjct: 134 ADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDWYASANSYQTPL 193
Query: 233 SNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGL 292
E + L A +P++ G R KA +L+ + AKG+
Sbjct: 194 LPEPDVQAVTRLTQTLL-AAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMSTYPAKGI 250
Query: 293 VPEHHPHFIGTY--------------------------WGAVSTAFFSVGYSLLLKKEKA 326
V + +P ++G+ + VS AF + Y L + + A
Sbjct: 251 VADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPA 310
Query: 327 VI---LQPDRVVIANG-PAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCE 382
+ + D V+A+ +L + + + ++N +N+ R Y+ E
Sbjct: 311 KLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNW-RAYL-----ASLE 364
Query: 383 PKE--PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQK-LKLPKGCGYEFQMQYGSIGW 439
K+ PL+ + + + K+ + + GD N + LKL + + ++G
Sbjct: 365 DKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGV 424
Query: 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT-IEVEI 498
+ + + PE++V GDG +T QD++T ++ I + N Y I+ E
Sbjct: 425 GIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQ 484
Query: 499 HDGPYN-----VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCF 553
D N + +++ + D +H +V E+L + E A +
Sbjct: 485 EDTNQNDFIGVEFNDIDFSKIADGVH-----MQAFRVNKIEQLPDVFEQAKAIAQHEPVL 539
Query: 554 IEVLVHKD 561
I+ ++ D
Sbjct: 540 IDAVITGD 547
>pdb|1Y9D|A Chain A, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|B Chain B, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|C Chain C, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
pdb|1Y9D|D Chain D, Pyruvate Oxidase Variant V265a From Lactobacillus
Plantarum
Length = 603
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 106/548 (19%), Positives = 205/548 (37%), Gaps = 69/548 (12%)
Query: 58 GATDVFSVPGDFNLTLLDHLIAEPG-LNLIGCCNELNAGYAADGYARSRG-VGACVVTFT 115
G ++ +PG +++D L AE ++ I +E AA A+ G +G C +
Sbjct: 25 GVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG 84
Query: 116 VGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR---CFQTV 172
GG ++N + A +++P++ ++G +GT + T QE+ + V
Sbjct: 85 PGGTHLMNGLYDAREDHVPVLALIG-----QFGTTGMNMDTF------QEMNENPIYADV 133
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKL 232
Y N +ID A+ A + + +LP P S L
Sbjct: 134 ADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDWYASANSYQTPL 193
Query: 233 SNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGL 292
E + L A +P++ G R KA +L+ + AKG+
Sbjct: 194 LPEPDVQAVTRLTQTLL-AAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMSTYPAKGI 250
Query: 293 VPEHHPHFIGTY--------------------------WGAVSTAFFSVGYSLLLKKEKA 326
V + +P ++G+ + VS AF + Y L + + A
Sbjct: 251 VADRYPAYLGSANRAAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPA 310
Query: 327 VI---LQPDRVVIANG-PAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCE 382
+ + D V+A+ +L + + + ++N +N+ R Y+ E
Sbjct: 311 KLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNW-RAYL-----ASLE 364
Query: 383 PKE--PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQK-LKLPKGCGYEFQMQYGSIGW 439
K+ PL+ + + + K+ + + GD N + LKL + + ++G
Sbjct: 365 DKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGV 424
Query: 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT-IEVEI 498
+ + + PE++V GDG +T QD++T ++ I + N Y I+ E
Sbjct: 425 GIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQ 484
Query: 499 HDGPYN-----VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCF 553
D N + +++ + D +H +V E+L + E A +
Sbjct: 485 EDTNQNDFIGVEFNDIDFSKIADGVH-----MQAFRVNKIEQLPDVFEQAKAIAQHEPVL 539
Query: 554 IEVLVHKD 561
I+ ++ D
Sbjct: 540 IDAVITGD 547
>pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|2IHT|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
Length = 573
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/462 (20%), Positives = 165/462 (35%), Gaps = 73/462 (15%)
Query: 82 GLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVG 140
G++ + +E AG AAD AR G AC T G ++ IA + + P+I +
Sbjct: 48 GIDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGXTNLSTGIATSVLDRSPVIALAA 107
Query: 141 GPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHE---LIDTAVSTAL 197
S+D N D Q L V L+ HE L+D+AV+ A
Sbjct: 108 QSESHDIFPN----------DTHQCLDSVAIVAPXSKYAVELQRPHEITDLVDSAVNAAX 157
Query: 198 KES-KPVYISVACNL--------PAIPHPTFSREPVPFSLSPKLSNEMGLXXXXXXXXXF 248
E P +IS+ +L +P+P + P + G
Sbjct: 158 TEPVGPSFISLPVDLLGSSEGIDTTVPNPPANTPAKPVGVVAD-----GWQKAADQAAAL 212
Query: 249 LNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWG-- 306
L +A PVLV G + A A LA+ V AKG++P H G G
Sbjct: 213 LAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYX 272
Query: 307 -------AVSTAFFSVGYSLLLKKEKAVILQP-------DRVVIANGPAFGCV------- 345
A+ T F V L + + A L+P ++ + P +
Sbjct: 273 DGILNFPALQTXFAPVDLVLTVGYDYAEDLRPSXWQKGIEKKTVRISPTVNPIPRVYRPD 332
Query: 346 --LMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQ---HIQKML 400
++ D L A + ++ T ++ R + +P + E L ++ + +++
Sbjct: 333 VDVVTDVL-AFVEHFETATASFGAKQRHDI---EPLRARIAEFLADPETYEDGXRVHQVI 388
Query: 401 SSETAVIAETGD----------SWFNCQKLKLPKG---CGYEFQMQYGSIGWSVGATLGY 447
S V E + +F + + G+ S G+ + A +G
Sbjct: 389 DSXNTVXEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGA 448
Query: 448 AQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
+ P++ GDG F + D+ T+ R + ++NN
Sbjct: 449 QXARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNN 490
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 26/250 (10%)
Query: 62 VFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120
VF PG L + D + N + +E AG+ A+GYAR+ G G +VT G +
Sbjct: 100 VFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN 159
Query: 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVN 180
V+ +A A+++ +P++ G ++ GT+ + + ++ T + +V
Sbjct: 160 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADV--------VGISRSCTKWNVMVK 211
Query: 181 NLEDAHELIDTAVSTALK-ESKPVYISVACNLPAIPHPTFSREPVPF----------SLS 229
++E+ I+ A A PV + +LP R P+P L+
Sbjct: 212 SVEELPLRINEAFEIATSGRPGPVLV----DLPKDVTAAILRNPIPTKTTLPSNALNQLT 267
Query: 230 PKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPK-MRVAKACNAFVELADACGYAVAVMPS 288
+ +E + +N A KPVL G + A EL+D V
Sbjct: 268 SRAQDEF-VMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQ 326
Query: 289 AKGLVPEHHP 298
G + P
Sbjct: 327 GLGSFDQEDP 336
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
G++G+ + A +G + PE VI GD SF +T ++S+ ++ G I ++NN
Sbjct: 513 GTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNN 567
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 26/250 (10%)
Query: 62 VFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120
VF PG L + D + N + +E AG+ A+GYAR+ G G +VT G +
Sbjct: 53 VFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATN 112
Query: 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVN 180
V+ +A A+++ +P++ G ++ GT+ + + ++ T + +V
Sbjct: 113 VVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADV--------VGISRSCTKWNVMVK 164
Query: 181 NLEDAHELIDTAVSTALK-ESKPVYISVACNLPAIPHPTFSREPVPF----------SLS 229
++E+ I+ A A PV + +LP R P+P L+
Sbjct: 165 SVEELPLRINEAFEIATSGRPGPVLV----DLPKDVTAAILRNPIPTKTTLPSNALNQLT 220
Query: 230 PKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPK-MRVAKACNAFVELADACGYAVAVMPS 288
+ +E + +N A KPVL G + A EL+D V
Sbjct: 221 SRAQDEF-VMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQ 279
Query: 289 AKGLVPEHHP 298
G + P
Sbjct: 280 GLGSFDQEDP 289
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
G++G+ + A +G + PE VI GD SF +T ++S+ ++ G I ++NN
Sbjct: 466 GTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNN 520
>pdb|1POX|A Chain A, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
pdb|1POX|B Chain B, The Refined Structures Of A Stabilized Mutant And Of
Wild-Type Pyruvate Oxidase From Lactobacillus Plantarum
Length = 585
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 105/554 (18%), Positives = 206/554 (37%), Gaps = 81/554 (14%)
Query: 58 GATDVFSVPGDFNLTLLDHLIAEPG-LNLIGCCNELNAGYAADGYARSRG-VGACVVTFT 115
G ++ +PG +++D L AE ++ I +E AA A+ G +G C +
Sbjct: 17 GVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG 76
Query: 116 VGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR---CFQTV 172
GG ++N + A +++P++ ++G +GT + T QE+ + V
Sbjct: 77 PGGTHLMNGLYDAREDHVPVLALIG-----QFGTTGMNMDTF------QEMNENPIYADV 125
Query: 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIP------HPTFSREPVPF 226
Y N +ID A+ A + + +LP + + + P
Sbjct: 126 ADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQISAEDWYASANNYQTPL 185
Query: 227 SLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVM 286
P + L L A +P++ G R KA +L+ +
Sbjct: 186 LPEPDVQAVTRLTQT-------LLAAERPLIYYGIGAR--KAGKELEQLSKTLKIPLMST 236
Query: 287 PSAKGLVPEHHPHFIGTY--------------------------WGAVSTAFFSVGYSLL 320
AKG+V + +P ++G+ + VS AF + Y L
Sbjct: 237 YPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQ 296
Query: 321 LKKEKAVI---LQPDRVVIANG-PAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEG 376
+ + A + + D V+A+ +L + + + ++N +N+ R Y+
Sbjct: 297 IDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNW-RAYL--- 352
Query: 377 QPPKCEPKE--PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQK-LKLPKGCGYEFQMQ 433
E K+ PL+ + + + K+ + + GD N + LKL +
Sbjct: 353 --ASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNL 410
Query: 434 YGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT 493
+ ++G + + + PE++V GDG +T QD+ T ++ I + N Y
Sbjct: 411 FATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLVTQVQYHLPVINVVFTNCQYG 470
Query: 494 -IEVEIHDGPYN-----VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPK 547
I+ E D N + +++ + D +H +V E+L + E A
Sbjct: 471 FIKDEQEDTNQNDFIGVEFNDIDFSKIADGVH-----MQAFRVNKIEQLPDVFEQAKAIA 525
Query: 548 KDCLCFIEVLVHKD 561
+ I+ ++ D
Sbjct: 526 QHEPVLIDAVITGD 539
>pdb|2PAN|A Chain A, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|B Chain B, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|C Chain C, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|D Chain D, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|E Chain E, Crystal Structure Of E. Coli Glyoxylate Carboligase
pdb|2PAN|F Chain F, Crystal Structure Of E. Coli Glyoxylate Carboligase
Length = 616
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 15/173 (8%)
Query: 383 PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSV 441
P +P RV ++ K + + G S Q L + K + Q G +GW++
Sbjct: 392 PVKPQRV---YEEXNKAFGRDVCYVTTIGLSQIAAAQXLHVFKDRHWINCGQAGPLGWTI 448
Query: 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN---GGYTIEVEI 498
A LG + P++ V+A GD FQ ++++ + I L+NN G
Sbjct: 449 PAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRA 508
Query: 499 HDGPYNV---IKNWNYTGL----VDAIHNGEG-KCWTTKVFCEEELIEAIENA 543
D Y V +N N + + VD + EG C +VF E++ A E A
Sbjct: 509 FDXDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQA 561
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 58 GATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG--VGACVVTFT 115
G T F VPG G+ I + A + A+GY R+ +G C+ T
Sbjct: 41 GITTAFGVPGAAINPFYSAXRKHGGIRHILARHVEGASHXAEGYTRATAGNIGVCLGTSG 100
Query: 116 VGGLSVLNAIAGAYSENLPLICIVG 140
G + A+ A ++++P++CI G
Sbjct: 101 PAGTDXITALYSASADSIPILCITG 125
>pdb|3LQ1|A Chain A, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
pdb|3LQ1|B Chain B, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
Length = 578
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 40/209 (19%)
Query: 43 ESTLGRHLA---RRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAAD 99
E L +LA LVQ G + PG + L + P L + +E +AG+ A
Sbjct: 7 EQVLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFAL 66
Query: 100 GYARSRGVGACVVTFTVGGLSVLN---AIAGAYSENLPLICI----------VGGPNSND 146
G A++ VV G + N A+A A +PLI + VG P + D
Sbjct: 67 GLAKAS--KRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMD 124
Query: 147 ----YGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKP 202
YG++ + LP+ S+E+ + +AV D A+ T P
Sbjct: 125 QLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAV-----------DIAMKTP---RGP 170
Query: 203 VYISVACNLPAIPHPTFSREPVPFSLSPK 231
V+++ P +P EP PF+ + K
Sbjct: 171 VHLNFPLREPLVP----ILEPSPFTATGK 195
>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From
Aerococcus Viridans
pdb|2DJI|A Chain A, Crystal Structure Of Pyruvate Oxidase From Aerococcus
Viridans Containing Fad
Length = 590
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 434 YGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
+ ++G ++ LG + P+++V IGDG+F +T DV T +R I + +N Y
Sbjct: 412 FATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNTEY 470
>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad
And Tpp, From Aerococcus Viridans
pdb|1V5G|A Chain A, Crystal Structure Of The Reaction Intermediate Between
Pyruvate Oxidase Containing Fad And Tpp, And Substrate
Pyruvate
Length = 589
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 434 YGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
+ ++G ++ LG + P+++V IGDG+F +T DV T +R I + +N Y
Sbjct: 411 FATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNTEY 469
>pdb|3EYA|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|C Chain C, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|D Chain D, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|E Chain E, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|F Chain F, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|G Chain G, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|H Chain H, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|I Chain I, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|J Chain J, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|K Chain K, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EYA|L Chain L, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 549
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 434 YGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG--G 491
+GS+ ++ LG + PE++V+A GDG F + D ++++ I + NN G
Sbjct: 405 HGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLG 464
Query: 492 YTIEVEIHDGPY----NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEE--ELIEAIENATG 545
+ + +E+ G Y + + N+ + +A C T + E+ E+ EA++ A
Sbjct: 465 F-VAMEMKAGGYLTDGTELHDTNFARIAEA-------CGITGIRVEKASEVDEALQRAF- 515
Query: 546 PKKDCLCFIEVLVHKDDTS 564
D ++V+V K++ +
Sbjct: 516 -SIDGPVLVDVVVAKEELA 533
>pdb|3EY9|A Chain A, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
pdb|3EY9|B Chain B, Structural Basis For Membrane Binding And Catalytic
Activation Of The Peripheral Membrane Enzyme Pyruvate
Oxidase From Escherichia Coli
Length = 572
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 434 YGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG--G 491
+GS+ ++ LG + PE++V+A GDG F + D ++++ I + NN G
Sbjct: 405 HGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLG 464
Query: 492 YTIEVEIHDGPY----NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEE--ELIEAIENATG 545
+ + +E+ G Y + + N+ + +A C T + E+ E+ EA++ A
Sbjct: 465 F-VAMEMKAGGYLTDGTELHDTNFARIAEA-------CGITGIRVEKASEVDEALQRAF- 515
Query: 546 PKKDCLCFIEVLVHKDDTS 564
D ++V+V K++ +
Sbjct: 516 -SIDGPVLVDVVVAKEELA 533
>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
Length = 568
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 439 WSV-GATLGY---AQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI 494
W V G +GY A +V K VIA GD +F + ++ T+ R + ++NNGG
Sbjct: 425 WGVMGIGMGYCVAAAAVTGKPVIAVEGDSAFGFSGMELETICRYNLPVTVIIMNNGGIYK 484
Query: 495 EVEIHDGPYNV----IKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDC 550
E P + + Y +++A G+G T EL A+E A K C
Sbjct: 485 GNEADPQPGVISCTRLTRGRYDMMMEAF-GGKGYVANTPA----ELKAALEEAVASGKPC 539
Query: 551 LCFIEVLVHKD 561
L I ++ D
Sbjct: 540 L--INAMIDPD 548
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 97/268 (36%), Gaps = 26/268 (9%)
Query: 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAAD--G 100
E T G H+ +++ D +T L + + G +E +AGYAA G
Sbjct: 8 ELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAG 67
Query: 101 YARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGP-------NSNDYGTNRIL 153
Y + G C+ G L+ + ++A A + P+I + G DY +
Sbjct: 68 YIEGK-PGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDY--EEMD 124
Query: 154 HHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKP--VYISVACNL 211
+ P R +N+++D I AV TA+ +P VY+ + L
Sbjct: 125 QMNVARPHCKASFR-----------INSIKDIPIGIARAVRTAV-SGRPGGVYVDLPAKL 172
Query: 212 PAIPHPTFSREPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNA 271
+ F ++ + A +PV++ G A+ +
Sbjct: 173 FGQTISVEEANKLLFKPIDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDE 232
Query: 272 FVELADACGYAVAVMPSAKGLVPEHHPH 299
L + G M AKGL+P++HP
Sbjct: 233 IRALVEETGIPFLPMGMAKGLLPDNHPQ 260
>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGN|B Chain B, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGO|A Chain A, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
pdb|2PGO|B Chain B, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
Length = 589
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 22/229 (9%)
Query: 82 GLNLIGCCNELNAGYAADGY----ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLIC 137
G +I EL + +GY RS VGA VG L + A+ A + +P +
Sbjct: 43 GKRVINPATELGGAWMVNGYNYVKDRSAAVGAW---HCVGNLLLHAAMQEARTGRIPAVH 99
Query: 138 IVGGPNSNDYGTNRILHHTIGLPDFSQEL--RCFQTVTCYQAVVNNLEDAHELIDTAVST 195
I G NS+ G + +Q++ + F + V L+ E I A
Sbjct: 100 I--GLNSDG--------RLAGRSEAAQQVPWQSFTPIARSTQRVERLDKVGEAIHEAFRV 149
Query: 196 ALKE-SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVK 254
A + P Y+ + +L A + VP + S L A
Sbjct: 150 AEGHPAGPAYVDIPFDLTA--DQIDDKALVPRGATRAKSVLHAPNEDVREAAAQLVAAKN 207
Query: 255 PVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGT 303
PV++AG + + A ++LA+ G V + G+ PE H +G+
Sbjct: 208 PVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGS 256
>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZG|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZH|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|C Chain C, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|D Chain D, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZF|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
pdb|1OZF|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
Length = 566
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 22/119 (18%)
Query: 386 PLRVNVLFQHIQKMLSSETAVIAETGDS--W-------FNCQKLKLPKGCGYEFQMQYG- 435
PLR+ + +Q +++S+ + + G W F +++ + G Q G
Sbjct: 373 PLRI---VRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNG-----QQTMGV 424
Query: 436 SIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI 494
++ W++GA L PE++V++ GDG F ++ ++ T +R + + + GY +
Sbjct: 425 ALPWAIGAWL----VNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNGYNM 479
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 21/163 (12%)
Query: 390 NVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQ 449
+VL ++ L +E A + + + K + CG M G +G+++GA++
Sbjct: 381 DVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIG-MGYAIGASVTSGS 439
Query: 450 SVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDG-------- 501
V +A GD +F + ++ T+ R I + NNGG + DG
Sbjct: 440 PV-----VAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNGG----IYRGDGVDLSGAGA 490
Query: 502 --PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIEN 542
P +++ + Y L+DA G G TT L I++
Sbjct: 491 PSPTDLLHHARYDKLMDAFR-GVGYNVTTTDELRHALTTGIQS 532
>pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2UZ1|A Chain A, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|D Chain D, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 394 QHIQKMLSSETAVIAETGDSWFNCQK-LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVP 452
Q I K + + V+A+ ++ + + K G+ GS+G G LG +
Sbjct: 377 QVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADL 436
Query: 453 E--KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD---GPYNV-- 505
E +R I GDGS + + T++R I+ ++NN + + GP V
Sbjct: 437 EAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTG 496
Query: 506 --IKNWNYTGLVDA 517
++N +Y G+ A
Sbjct: 497 TRLENGSYHGVAAA 510
>pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|C Chain C, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 394 QHIQKMLSSETAVIAETGDSWFNCQK-LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVP 452
Q I K + + V+A+ ++ + + K G+ GS+G G LG +
Sbjct: 377 QVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADL 436
Query: 453 E--KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD---GPYNV-- 505
E +R I GDGS + + T++R I+ ++NN + + GP V
Sbjct: 437 EAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTG 496
Query: 506 --IKNWNYTGLVDA 517
++N +Y G+ A
Sbjct: 497 TRLENGSYHGVAAA 510
>pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
pdb|3D7K|B Chain B, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
Length = 570
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 394 QHIQKMLSSETAVIAETGDSWFNCQK-LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVP 452
Q I K + + V+A+ ++ + + K G+ GS+G G LG +
Sbjct: 377 QVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADL 436
Query: 453 E--KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD---GPYNV-- 505
E +R I GDGS + + T++R I+ ++NN + + GP V
Sbjct: 437 EAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTG 496
Query: 506 --IKNWNYTGLVDA 517
++N +Y G+ A
Sbjct: 497 TRLENGSYHGVAAA 510
>pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|C Chain C, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|D Chain D, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
Length = 570
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 394 QHIQKMLSSETAVIAETGDSWFNCQK-LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVP 452
Q I K + + V+A+ ++ + + K G+ GS+G G LG +
Sbjct: 377 QVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADL 436
Query: 453 E--KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD---GPYNV-- 505
E +R I GDGS + + T++R I+ ++NN + + GP V
Sbjct: 437 EAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTG 496
Query: 506 --IKNWNYTGLVDA 517
++N +Y G+ A
Sbjct: 497 TRLENGSYHGVAAA 510
>pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
pdb|3IAE|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
Length = 570
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 394 QHIQKMLSSETAVIAETGDSWFNCQK-LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVP 452
Q I K + + V+A+ ++ + + K G+ GS+G G LG +
Sbjct: 377 QVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADL 436
Query: 453 E--KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD---GPYNV-- 505
E +R I GDGS + + T++R I+ ++NN + + GP V
Sbjct: 437 EAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTG 496
Query: 506 --IKNWNYTGLVDA 517
++N +Y G+ A
Sbjct: 497 TRLENGSYHGVAAA 510
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 36 TPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGC-CNELNA 94
T L +STL R LA RL+++G V + GD + HL +E G + N
Sbjct: 375 TGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI---VRRHLSSELGFSKAHRDVNVRRI 431
Query: 95 GYAADGYARSRGVGAC 110
G+ A ++RG+ C
Sbjct: 432 GFVASEITKNRGIAIC 447
>pdb|2AG1|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
Length = 563
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 12/135 (8%)
Query: 394 QHIQKMLSSETAVIAETGDS--WFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSV 451
Q I K + + V+A+ + W + ++ G G+ GS G G LG +
Sbjct: 377 QVIAKHVDAGVTVVADGALTYLWLSEVXSRVKPG-GFLCHGYLGSXGVGFGTALGAQVAD 435
Query: 452 PE--KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD---GPYNV- 505
E +R I GDGS + + T++R I+ + NN + + GP V
Sbjct: 436 LEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIXNNQSWGATLHFQQLAVGPNRVT 495
Query: 506 ---IKNWNYTGLVDA 517
++N +Y G+ A
Sbjct: 496 GTRLENGSYHGVAAA 510
>pdb|3M5G|A Chain A, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
pdb|3M5G|C Chain C, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
pdb|3M5G|E Chain E, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
pdb|3M5H|A Chain A, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 3sln
pdb|3M5H|C Chain C, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 3sln
pdb|3M5H|E Chain E, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 3sln
pdb|3M5I|A Chain A, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 6sln
pdb|3M5I|C Chain C, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 6sln
pdb|3M5I|E Chain E, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With 6sln
pdb|3M5J|A Chain A, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With Lstb
pdb|3M5J|C Chain C, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With Lstb
pdb|3M5J|E Chain E, Crystal Structure Of A H7 Influenza Virus Hemagglutinin
Complexed With Lstb
Length = 317
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 108 GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP------D 161
G V T T G+ V+NA + N+ IC G D G +L IG P +
Sbjct: 17 GTKVNTLTERGIEVVNATETVETTNIKKIC-TQGKRPTDLGQCGLLGTLIGPPQCDQFLE 75
Query: 162 FSQEL---RCFQTVTCYQAVVNNLEDAHELI 189
FS +L R T CY N E +++
Sbjct: 76 FSSDLIIERREGTDICYPGRFTNEESLRQIL 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,988,323
Number of Sequences: 62578
Number of extensions: 746958
Number of successful extensions: 1641
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1498
Number of HSP's gapped (non-prelim): 95
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)