Query 044559
Match_columns 585
No_of_seqs 247 out of 1630
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02573 pyruvate decarboxylas 100.0 5.1E-97 1E-101 813.7 56.9 547 39-585 11-578 (578)
2 COG0028 IlvB Thiamine pyrophos 100.0 6.8E-96 1E-100 790.3 45.4 498 43-561 1-533 (550)
3 TIGR01504 glyox_carbo_lig glyo 100.0 1.6E-91 3.6E-96 772.3 45.9 504 43-565 2-561 (588)
4 COG3961 Pyruvate decarboxylase 100.0 2.9E-90 6.4E-95 699.1 45.2 530 42-580 2-556 (557)
5 PRK08979 acetolactate synthase 100.0 1.3E-90 2.9E-95 764.8 46.1 505 43-564 3-551 (572)
6 PRK06965 acetolactate synthase 100.0 5.6E-90 1.2E-94 761.4 45.2 519 22-564 4-567 (587)
7 PRK07979 acetolactate synthase 100.0 7E-90 1.5E-94 760.1 45.8 506 43-564 3-553 (574)
8 PRK06466 acetolactate synthase 100.0 1.2E-89 2.7E-94 758.1 46.2 505 43-564 3-553 (574)
9 PRK09107 acetolactate synthase 100.0 1.4E-89 3E-94 757.9 46.0 504 41-563 8-558 (595)
10 TIGR03393 indolpyr_decarb indo 100.0 1.4E-88 3E-93 744.4 52.3 512 44-570 1-538 (539)
11 PRK08322 acetolactate synthase 100.0 3.8E-89 8.3E-94 752.3 46.1 505 44-573 1-542 (547)
12 TIGR03394 indol_phenyl_DC indo 100.0 2E-88 4.3E-93 739.8 51.0 507 45-571 1-533 (535)
13 PRK11269 glyoxylate carboligas 100.0 4.9E-89 1.1E-93 755.2 46.3 503 43-564 3-561 (591)
14 PRK07282 acetolactate synthase 100.0 4.1E-89 8.9E-94 751.4 45.1 501 42-564 8-546 (566)
15 PRK07418 acetolactate synthase 100.0 9.4E-89 2E-93 755.7 47.6 501 41-563 16-563 (616)
16 PRK06725 acetolactate synthase 100.0 9.9E-89 2.1E-93 747.6 45.7 504 40-564 11-550 (570)
17 PRK06048 acetolactate synthase 100.0 1.9E-88 4E-93 746.8 47.5 501 42-564 6-543 (561)
18 PRK08978 acetolactate synthase 100.0 7.3E-89 1.6E-93 749.1 43.7 496 44-565 1-531 (548)
19 PRK07789 acetolactate synthase 100.0 2.2E-88 4.8E-93 752.2 47.8 507 39-563 26-580 (612)
20 KOG1184 Thiamine pyrophosphate 100.0 7E-88 1.5E-92 678.6 45.8 539 42-581 2-561 (561)
21 PRK06456 acetolactate synthase 100.0 2.9E-88 6.3E-93 748.1 46.8 505 43-564 1-550 (572)
22 PRK08527 acetolactate synthase 100.0 3.3E-88 7.2E-93 745.1 46.4 503 43-565 2-544 (563)
23 PRK08617 acetolactate synthase 100.0 2.3E-88 5E-93 745.8 44.2 505 42-569 3-546 (552)
24 PLN02470 acetolactate synthase 100.0 4.1E-88 8.9E-93 747.0 46.3 503 42-564 11-562 (585)
25 TIGR03457 sulphoacet_xsc sulfo 100.0 5.3E-88 1.1E-92 745.8 46.6 502 43-566 1-564 (579)
26 PRK08611 pyruvate oxidase; Pro 100.0 5.5E-88 1.2E-92 744.0 46.5 500 43-564 3-535 (576)
27 PRK08273 thiamine pyrophosphat 100.0 4.4E-88 9.5E-93 747.7 44.9 500 44-562 3-549 (597)
28 PRK08155 acetolactate synthase 100.0 1.2E-87 2.5E-92 741.5 46.9 501 43-565 12-549 (564)
29 TIGR02418 acolac_catab acetola 100.0 6.9E-88 1.5E-92 740.0 44.5 498 46-566 1-537 (539)
30 CHL00099 ilvB acetohydroxyacid 100.0 2E-87 4.4E-92 740.7 46.7 504 42-564 8-560 (585)
31 PRK06457 pyruvate dehydrogenas 100.0 1.1E-87 2.5E-92 738.7 44.0 491 43-564 1-524 (549)
32 PRK07710 acetolactate synthase 100.0 1.9E-87 4.1E-92 740.2 45.7 504 40-564 12-553 (571)
33 PRK09124 pyruvate dehydrogenas 100.0 4.5E-87 9.9E-92 738.3 47.6 499 44-564 3-535 (574)
34 PRK06546 pyruvate dehydrogenas 100.0 6.6E-87 1.4E-91 735.0 47.2 498 44-563 3-534 (578)
35 PRK05858 hypothetical protein; 100.0 1.7E-87 3.7E-92 736.3 41.6 502 43-564 4-535 (542)
36 TIGR00118 acolac_lg acetolacta 100.0 1.3E-86 2.9E-91 732.8 45.8 501 44-564 1-541 (558)
37 PRK06882 acetolactate synthase 100.0 1.4E-86 3.1E-91 734.9 45.8 504 44-564 4-551 (574)
38 TIGR02720 pyruv_oxi_spxB pyruv 100.0 1.9E-86 4.1E-91 731.6 45.8 500 46-565 1-538 (575)
39 PRK08199 thiamine pyrophosphat 100.0 7.1E-87 1.5E-91 734.2 42.3 498 41-564 5-543 (557)
40 PRK06154 hypothetical protein; 100.0 3.2E-86 7E-91 726.9 46.8 498 40-563 16-559 (565)
41 PRK06276 acetolactate synthase 100.0 1.7E-86 3.6E-91 734.3 44.8 499 44-562 1-546 (586)
42 PRK07524 hypothetical protein; 100.0 4E-86 8.8E-91 725.4 42.4 493 43-561 1-531 (535)
43 TIGR03254 oxalate_oxc oxalyl-C 100.0 1.2E-85 2.5E-90 724.2 44.8 507 43-566 2-545 (554)
44 PRK07525 sulfoacetaldehyde ace 100.0 2.4E-85 5.3E-90 725.3 46.3 500 42-563 4-566 (588)
45 PRK07064 hypothetical protein; 100.0 1.2E-85 2.6E-90 724.0 41.1 491 43-561 2-530 (544)
46 PRK09259 putative oxalyl-CoA d 100.0 4.5E-85 9.7E-90 721.1 42.9 509 41-566 7-553 (569)
47 PRK08266 hypothetical protein; 100.0 6.6E-85 1.4E-89 717.4 41.1 497 43-565 3-531 (542)
48 PRK06112 acetolactate synthase 100.0 8.3E-84 1.8E-88 712.9 49.1 508 38-565 8-566 (578)
49 PRK12474 hypothetical protein; 100.0 4.3E-84 9.4E-89 705.6 45.0 477 42-558 3-518 (518)
50 PRK07586 hypothetical protein; 100.0 7.2E-84 1.6E-88 704.7 43.3 482 44-558 1-514 (514)
51 PRK08327 acetolactate synthase 100.0 2.1E-83 4.5E-88 706.6 42.4 506 42-560 5-568 (569)
52 KOG1185 Thiamine pyrophosphate 100.0 4.9E-83 1.1E-87 637.4 36.2 509 40-565 10-566 (571)
53 PRK07092 benzoylformate decarb 100.0 1.9E-82 4.1E-87 695.0 44.4 487 43-559 11-530 (530)
54 PRK07449 2-succinyl-5-enolpyru 100.0 8E-82 1.7E-86 696.7 34.6 509 44-575 9-565 (568)
55 KOG4166 Thiamine pyrophosphate 100.0 1.9E-79 4.1E-84 600.1 30.8 503 43-565 90-653 (675)
56 PLN02980 2-oxoglutarate decarb 100.0 1.5E-73 3.3E-78 685.6 39.0 513 44-575 301-905 (1655)
57 COG3960 Glyoxylate carboligase 100.0 1.6E-67 3.4E-72 503.0 22.2 504 43-564 3-561 (592)
58 TIGR00173 menD 2-succinyl-5-en 100.0 2.3E-63 4.9E-68 530.2 27.0 390 46-449 2-431 (432)
59 COG3962 Acetolactate synthase 100.0 1.5E-61 3.2E-66 479.8 30.9 514 42-571 5-587 (617)
60 COG1165 MenD 2-succinyl-6-hydr 100.0 1.5E-54 3.2E-59 444.9 29.1 509 43-576 7-563 (566)
61 cd07039 TPP_PYR_POX Pyrimidine 100.0 6.2E-41 1.3E-45 308.6 17.9 161 45-213 1-162 (164)
62 cd07037 TPP_PYR_MenD Pyrimidin 100.0 3.2E-39 7E-44 294.6 16.8 153 49-209 2-162 (162)
63 cd07038 TPP_PYR_PDC_IPDC_like 100.0 7.4E-39 1.6E-43 294.4 18.3 162 48-209 1-162 (162)
64 PF02776 TPP_enzyme_N: Thiamin 100.0 1.1E-37 2.3E-42 290.9 14.2 164 44-214 1-166 (172)
65 TIGR03297 Ppyr-DeCO2ase phosph 100.0 2.1E-35 4.6E-40 302.8 30.5 331 58-563 1-340 (361)
66 cd02013 TPP_Xsc_like Thiamine 100.0 1.4E-36 3E-41 288.9 16.3 182 385-571 2-191 (196)
67 cd02006 TPP_Gcl Thiamine pyrop 100.0 2.8E-36 6E-41 288.6 15.1 175 385-564 6-199 (202)
68 TIGR03336 IOR_alpha indolepyru 100.0 2.7E-33 5.9E-38 308.9 39.6 481 42-562 3-533 (595)
69 cd02005 TPP_PDC_IPDC Thiamine 100.0 7.2E-35 1.6E-39 273.9 18.1 176 386-567 1-182 (183)
70 cd02010 TPP_ALS Thiamine pyrop 100.0 7.7E-35 1.7E-39 272.2 15.4 169 389-564 1-175 (177)
71 cd02015 TPP_AHAS Thiamine pyro 100.0 3.8E-34 8.3E-39 270.5 16.1 171 387-564 1-179 (186)
72 cd02003 TPP_IolD Thiamine pyro 100.0 9.4E-35 2E-39 278.4 12.0 174 391-571 3-196 (205)
73 cd02009 TPP_SHCHC_synthase Thi 100.0 5.7E-34 1.2E-38 266.1 14.5 163 389-559 3-175 (175)
74 cd02014 TPP_POX Thiamine pyrop 100.0 5.4E-33 1.2E-37 260.6 15.7 171 387-564 2-178 (178)
75 cd02004 TPP_BZL_OCoD_HPCL Thia 100.0 6.9E-33 1.5E-37 258.7 16.0 164 389-559 1-172 (172)
76 cd07035 TPP_PYR_POX_like Pyrim 100.0 2.5E-32 5.4E-37 250.8 16.8 153 48-209 1-155 (155)
77 PRK06163 hypothetical protein; 100.0 9.5E-32 2.1E-36 254.5 15.5 164 384-563 10-177 (202)
78 cd02002 TPP_BFDC Thiamine pyro 100.0 3.5E-31 7.6E-36 248.9 14.5 164 387-558 1-178 (178)
79 cd02001 TPP_ComE_PpyrDC Thiami 100.0 1.3E-30 2.9E-35 238.1 15.7 155 390-561 2-157 (157)
80 cd07034 TPP_PYR_PFOR_IOR-alpha 100.0 5.6E-30 1.2E-34 236.4 17.9 154 46-207 1-158 (160)
81 TIGR03846 sulfopy_beta sulfopy 100.0 8E-30 1.7E-34 238.3 16.2 157 390-563 2-160 (181)
82 cd03371 TPP_PpyrDC Thiamine py 100.0 1.3E-29 2.9E-34 238.4 15.7 161 390-564 2-168 (188)
83 PF02775 TPP_enzyme_C: Thiamin 100.0 4.5E-30 9.7E-35 235.1 10.6 141 409-556 1-153 (153)
84 cd06586 TPP_enzyme_PYR Pyrimid 100.0 2.9E-28 6.3E-33 223.6 16.8 154 48-209 1-154 (154)
85 cd02008 TPP_IOR_alpha Thiamine 100.0 2.2E-28 4.8E-33 229.2 14.7 159 386-558 9-176 (178)
86 cd03375 TPP_OGFOR Thiamine pyr 100.0 6.5E-28 1.4E-32 228.3 16.0 159 390-563 12-188 (193)
87 cd03372 TPP_ComE Thiamine pyro 100.0 8.3E-28 1.8E-32 224.8 16.3 157 390-564 2-160 (179)
88 cd00568 TPP_enzymes Thiamine p 100.0 8E-28 1.7E-32 224.0 14.7 160 392-558 2-168 (168)
89 cd03376 TPP_PFOR_porB_like Thi 99.9 2.8E-27 6E-32 230.1 15.6 167 386-561 10-202 (235)
90 cd02018 TPP_PFOR Thiamine pyro 99.9 3.4E-27 7.4E-32 230.0 16.1 171 386-562 10-206 (237)
91 PRK09628 oorB 2-oxoglutarate-a 99.9 2.3E-26 5E-31 227.1 16.9 163 385-562 24-204 (277)
92 TIGR03845 sulfopyru_alph sulfo 99.9 1.1E-25 2.3E-30 204.7 15.7 151 48-211 2-156 (157)
93 PRK05778 2-oxoglutarate ferred 99.9 1.2E-25 2.5E-30 224.4 17.2 159 387-560 28-204 (301)
94 PRK11867 2-oxoglutarate ferred 99.9 2E-25 4.3E-30 222.1 16.9 172 386-573 22-217 (286)
95 PRK11869 2-oxoacid ferredoxin 99.9 8.8E-25 1.9E-29 215.3 14.8 147 399-560 32-194 (280)
96 PRK11866 2-oxoacid ferredoxin 99.9 1.1E-23 2.3E-28 207.8 16.5 161 387-562 13-195 (279)
97 TIGR02177 PorB_KorB 2-oxoacid: 99.9 9.9E-24 2.2E-28 208.6 14.0 145 400-560 26-187 (287)
98 COG4231 Indolepyruvate ferredo 99.9 1.6E-18 3.5E-23 181.8 33.5 460 42-555 14-550 (640)
99 PRK13030 2-oxoacid ferredoxin 99.8 1.1E-15 2.5E-20 175.2 35.2 469 41-554 17-598 (1159)
100 PRK09193 indolepyruvate ferred 99.7 2E-15 4.3E-20 172.6 34.0 476 36-554 20-612 (1165)
101 cd02012 TPP_TK Thiamine pyroph 99.7 8.1E-18 1.8E-22 166.9 10.6 123 432-564 102-232 (255)
102 TIGR03181 PDH_E1_alph_x pyruva 99.7 4.8E-17 1E-21 167.3 10.3 116 433-560 120-247 (341)
103 cd02000 TPP_E1_PDC_ADC_BCADC T 99.7 1.4E-16 3E-21 161.1 10.6 119 432-560 101-229 (293)
104 PF00205 TPP_enzyme_M: Thiamin 99.7 7.2E-17 1.6E-21 144.8 7.4 111 242-354 1-137 (137)
105 PRK13029 2-oxoacid ferredoxin 99.7 1.6E-13 3.5E-18 156.7 36.2 440 38-520 25-579 (1186)
106 TIGR03182 PDH_E1_alph_y pyruva 99.6 6.3E-16 1.4E-20 157.4 10.1 119 432-560 107-235 (315)
107 CHL00149 odpA pyruvate dehydro 99.6 2.1E-15 4.5E-20 154.7 10.3 116 432-560 125-260 (341)
108 PRK05899 transketolase; Review 99.6 2.2E-15 4.7E-20 168.0 11.1 117 432-560 115-249 (624)
109 PLN02374 pyruvate dehydrogenas 99.5 2.3E-13 4.9E-18 142.7 11.6 116 432-560 191-326 (433)
110 PRK11865 pyruvate ferredoxin o 99.5 1.3E-12 2.8E-17 129.9 16.4 165 385-560 22-212 (299)
111 cd02007 TPP_DXS Thiamine pyrop 99.4 4.6E-13 9.9E-18 126.9 10.4 112 432-561 72-192 (195)
112 PRK11864 2-ketoisovalerate fer 99.4 9.5E-12 2.1E-16 123.7 15.3 164 387-560 24-208 (300)
113 PRK05444 1-deoxy-D-xylulose-5- 99.4 2.5E-12 5.4E-17 142.2 11.2 123 432-563 114-246 (580)
114 PRK12571 1-deoxy-D-xylulose-5- 99.1 4.5E-10 9.8E-15 124.9 11.8 123 433-562 121-286 (641)
115 COG1013 PorB Pyruvate:ferredox 99.0 4.9E-09 1.1E-13 104.8 13.8 124 434-561 69-206 (294)
116 PRK08659 2-oxoglutarate ferred 99.0 2E-08 4.3E-13 104.8 17.9 163 43-213 6-175 (376)
117 PRK09627 oorA 2-oxoglutarate-a 99.0 1.4E-08 3.1E-13 105.5 16.5 167 42-213 4-174 (375)
118 PLN02790 transketolase 99.0 3.3E-09 7.1E-14 118.5 11.9 118 432-560 102-239 (654)
119 PRK07119 2-ketoisovalerate fer 98.9 3.2E-08 7E-13 102.3 17.3 159 43-213 6-175 (352)
120 TIGR03710 OAFO_sf 2-oxoacid:ac 98.9 1.9E-08 4.1E-13 110.6 15.3 166 41-214 193-365 (562)
121 COG4032 Predicted thiamine-pyr 98.8 2.1E-08 4.6E-13 85.5 10.0 162 43-212 3-166 (172)
122 PRK12754 transketolase; Review 98.8 1.4E-08 3E-13 112.8 11.6 118 432-560 111-247 (663)
123 PF00456 Transketolase_N: Tran 98.8 3.2E-09 7E-14 108.2 6.1 117 433-560 109-244 (332)
124 PTZ00089 transketolase; Provis 98.8 1.2E-08 2.7E-13 114.0 11.3 118 432-560 113-250 (661)
125 TIGR00232 tktlase_bact transke 98.8 1.5E-08 3.2E-13 113.3 11.8 118 432-560 107-243 (653)
126 PRK12753 transketolase; Review 98.8 1.3E-08 2.9E-13 113.6 10.9 117 433-560 112-247 (663)
127 PRK00945 acetyl-CoA decarbonyl 98.8 2.1E-08 4.5E-13 91.4 9.0 60 243-304 25-91 (171)
128 PRK08366 vorA 2-ketoisovalerat 98.8 1.5E-07 3.2E-12 98.3 16.6 156 42-209 4-166 (390)
129 PRK12315 1-deoxy-D-xylulose-5- 98.8 3.1E-08 6.8E-13 109.3 12.1 122 433-563 111-247 (581)
130 PRK08367 porA pyruvate ferredo 98.8 2.1E-07 4.5E-12 97.5 17.0 158 43-210 6-170 (394)
131 PRK09622 porA pyruvate flavodo 98.8 1.9E-07 4.2E-12 98.6 16.6 162 38-211 7-177 (407)
132 PF01855 POR_N: Pyruvate flavo 98.7 1.3E-07 2.9E-12 91.5 12.4 151 53-212 2-157 (230)
133 COG3959 Transketolase, N-termi 98.7 1.9E-07 4E-12 86.9 12.5 113 436-559 124-241 (243)
134 PF00676 E1_dh: Dehydrogenase 98.7 3.3E-08 7.1E-13 100.2 7.5 117 434-560 100-226 (300)
135 cd02017 TPP_E1_EcPDC_like Thia 98.7 1.1E-07 2.4E-12 97.2 10.9 117 433-560 116-318 (386)
136 TIGR00315 cdhB CO dehydrogenas 98.7 4.2E-08 9.1E-13 88.8 6.2 60 243-304 18-83 (162)
137 COG1071 AcoA Pyruvate/2-oxoglu 98.6 2E-07 4.4E-12 94.4 10.4 119 432-560 133-262 (358)
138 PF13292 DXP_synthase_N: 1-deo 98.6 3.4E-07 7.3E-12 88.2 10.9 160 390-558 47-270 (270)
139 PLN02269 Pyruvate dehydrogenas 98.6 2.2E-07 4.8E-12 96.0 9.6 116 432-560 135-260 (362)
140 COG0021 TktA Transketolase [Ca 98.6 3.5E-07 7.6E-12 97.5 11.0 116 433-559 114-248 (663)
141 TIGR00204 dxs 1-deoxy-D-xylulo 98.5 6E-07 1.3E-11 99.9 11.4 123 433-563 109-278 (617)
142 PLN02234 1-deoxy-D-xylulose-5- 98.5 8.7E-07 1.9E-11 97.5 12.1 126 432-563 174-325 (641)
143 cd02016 TPP_E1_OGDC_like Thiam 98.5 3.8E-07 8.2E-12 89.4 7.7 118 433-560 111-247 (265)
144 cd03377 TPP_PFOR_PNO Thiamine 98.4 7.2E-06 1.6E-10 83.4 16.6 100 454-560 152-268 (365)
145 cd02011 TPP_PK Thiamine pyroph 98.4 1.5E-06 3.2E-11 83.1 9.6 101 433-543 60-169 (227)
146 TIGR03186 AKGDH_not_PDH alpha- 98.4 2E-06 4.3E-11 97.2 11.2 118 432-560 186-389 (889)
147 COG0674 PorA Pyruvate:ferredox 98.3 1.5E-05 3.2E-10 82.9 16.0 158 43-213 5-169 (365)
148 TIGR00759 aceE pyruvate dehydr 98.2 6.5E-06 1.4E-10 92.0 11.2 89 432-530 186-289 (885)
149 PLN02582 1-deoxy-D-xylulose-5- 98.2 9.4E-06 2E-10 90.3 11.6 126 432-562 141-323 (677)
150 PRK13012 2-oxoacid dehydrogena 98.2 1.1E-05 2.4E-10 91.6 12.2 118 432-560 200-403 (896)
151 KOG0523 Transketolase [Carbohy 98.2 1.3E-05 2.9E-10 84.7 11.2 118 431-559 114-241 (632)
152 PRK09405 aceE pyruvate dehydro 98.1 2.2E-05 4.7E-10 89.0 12.1 118 432-560 192-395 (891)
153 PLN02225 1-deoxy-D-xylulose-5- 98.1 1.8E-05 4E-10 87.5 10.9 170 387-562 123-367 (701)
154 PRK09404 sucA 2-oxoglutarate d 98.1 9.5E-06 2.1E-10 92.7 8.3 116 435-560 314-449 (924)
155 COG1154 Dxs Deoxyxylulose-5-ph 98.0 1.7E-05 3.6E-10 84.5 7.4 121 433-561 113-281 (627)
156 PRK05261 putative phosphoketol 97.9 4.5E-05 9.8E-10 85.3 10.4 118 433-560 140-284 (785)
157 TIGR00239 2oxo_dh_E1 2-oxoglut 97.9 4.2E-05 9.1E-10 87.2 9.2 120 432-560 312-450 (929)
158 TIGR02176 pyruv_ox_red pyruvat 97.8 0.0008 1.7E-08 80.1 17.7 155 43-208 3-168 (1165)
159 TIGR02176 pyruv_ox_red pyruvat 97.6 0.00098 2.1E-08 79.3 15.3 101 454-560 952-1068(1165)
160 KOG0225 Pyruvate dehydrogenase 97.5 0.00025 5.3E-09 69.9 7.6 117 432-560 162-288 (394)
161 KOG1182 Branched chain alpha-k 97.1 0.00028 6.1E-09 68.7 2.8 113 435-560 193-319 (432)
162 cd07035 TPP_PYR_POX_like Pyrim 97.0 0.006 1.3E-07 55.5 10.3 106 440-557 46-154 (155)
163 cd07039 TPP_PYR_POX Pyrimidine 96.9 0.0065 1.4E-07 56.0 9.7 119 426-560 39-160 (164)
164 COG1880 CdhB CO dehydrogenase/ 96.8 0.0018 3.8E-08 57.0 4.7 49 244-292 27-75 (170)
165 PF02776 TPP_enzyme_N: Thiamin 96.8 0.0076 1.6E-07 56.0 9.1 119 425-559 39-162 (172)
166 cd07033 TPP_PYR_DXS_TK_like Py 96.3 0.2 4.3E-06 45.6 15.4 113 84-209 40-156 (156)
167 cd06586 TPP_enzyme_PYR Pyrimid 96.1 0.035 7.7E-07 50.2 9.3 104 440-557 47-153 (154)
168 cd07038 TPP_PYR_PDC_IPDC_like 96.0 0.038 8.2E-07 50.8 8.9 109 440-557 47-161 (162)
169 cd07037 TPP_PYR_MenD Pyrimidin 95.5 0.051 1.1E-06 49.9 7.6 105 440-557 47-161 (162)
170 PF09364 XFP_N: XFP N-terminal 95.1 0.027 5.8E-07 57.1 4.6 95 434-536 139-240 (379)
171 TIGR03845 sulfopyru_alph sulfo 95.0 0.21 4.5E-06 45.6 9.8 106 439-557 45-153 (157)
172 smart00861 Transket_pyr Transk 95.0 0.54 1.2E-05 43.3 12.8 113 85-209 51-166 (168)
173 cd02013 TPP_Xsc_like Thiamine 94.7 0.81 1.8E-05 43.4 13.6 114 94-211 58-180 (196)
174 PLN02470 acetolactate synthase 94.5 0.53 1.1E-05 52.8 13.6 119 425-559 51-173 (585)
175 TIGR00232 tktlase_bact transke 94.4 0.77 1.7E-05 52.0 14.6 118 84-211 397-516 (653)
176 PRK07524 hypothetical protein; 94.4 0.21 4.6E-06 55.3 10.0 109 440-559 51-164 (535)
177 PRK09259 putative oxalyl-CoA d 94.4 0.17 3.7E-06 56.5 9.4 120 426-559 48-171 (569)
178 TIGR03254 oxalate_oxc oxalyl-C 94.4 0.18 3.8E-06 56.2 9.3 121 426-560 41-165 (554)
179 PRK08611 pyruvate oxidase; Pro 94.3 0.18 3.9E-06 56.4 9.3 119 426-560 44-165 (576)
180 PRK06965 acetolactate synthase 94.3 0.41 9E-06 53.6 12.1 120 425-560 59-182 (587)
181 PF02775 TPP_enzyme_C: Thiamin 94.2 0.13 2.8E-06 46.7 6.7 118 83-207 19-153 (153)
182 PRK08322 acetolactate synthase 94.2 0.18 3.9E-06 56.0 9.2 108 440-560 50-161 (547)
183 PTZ00182 3-methyl-2-oxobutanat 94.2 3.7 8E-05 42.8 18.2 155 44-212 35-208 (355)
184 PRK07979 acetolactate synthase 94.2 0.18 3.9E-06 56.4 9.0 120 425-560 42-165 (574)
185 COG3957 Phosphoketolase [Carbo 94.1 0.07 1.5E-06 58.3 5.2 82 434-520 152-240 (793)
186 PRK09107 acetolactate synthase 94.1 0.2 4.3E-06 56.2 9.1 120 425-560 49-172 (595)
187 COG0028 IlvB Thiamine pyrophos 94.1 0.2 4.3E-06 55.3 8.9 108 440-560 51-162 (550)
188 TIGR01504 glyox_carbo_lig glyo 94.1 0.25 5.5E-06 55.3 9.9 108 441-560 54-165 (588)
189 PRK07586 hypothetical protein; 94.1 0.19 4.2E-06 55.3 8.8 108 440-560 51-162 (514)
190 PRK07789 acetolactate synthase 94.0 0.22 4.8E-06 56.1 9.4 118 426-559 70-191 (612)
191 cd02004 TPP_BZL_OCoD_HPCL Thia 94.0 0.34 7.5E-06 44.8 9.2 110 93-210 52-172 (172)
192 PRK06725 acetolactate synthase 93.9 0.22 4.7E-06 55.6 9.0 119 426-560 53-175 (570)
193 PTZ00089 transketolase; Provis 93.9 0.55 1.2E-05 53.2 12.1 117 84-211 404-523 (661)
194 cd02006 TPP_Gcl Thiamine pyrop 93.8 1.2 2.6E-05 42.5 12.6 114 94-211 62-195 (202)
195 PRK12753 transketolase; Review 93.8 0.61 1.3E-05 52.8 12.2 117 84-211 403-522 (663)
196 PRK12754 transketolase; Review 93.7 1.2 2.6E-05 50.3 14.3 116 84-210 403-521 (663)
197 PRK08266 hypothetical protein; 93.7 0.67 1.4E-05 51.5 12.4 121 425-559 43-168 (542)
198 PRK06466 acetolactate synthase 93.6 0.54 1.2E-05 52.6 11.5 120 425-560 42-165 (574)
199 PRK06276 acetolactate synthase 93.6 0.31 6.7E-06 54.7 9.5 107 440-559 50-160 (586)
200 PRK07525 sulfoacetaldehyde ace 93.6 0.26 5.6E-06 55.3 8.8 119 426-560 44-165 (588)
201 PLN02790 transketolase 93.5 0.72 1.6E-05 52.2 12.2 116 84-211 393-513 (654)
202 PRK05858 hypothetical protein; 93.5 0.36 7.8E-06 53.6 9.7 119 426-560 43-165 (542)
203 TIGR00118 acolac_lg acetolacta 93.4 0.68 1.5E-05 51.6 11.8 118 426-559 40-161 (558)
204 PRK07418 acetolactate synthase 93.4 0.35 7.7E-06 54.5 9.6 118 426-559 61-182 (616)
205 PRK07710 acetolactate synthase 93.4 0.28 6E-06 54.9 8.7 107 440-559 65-175 (571)
206 PRK08979 acetolactate synthase 93.3 0.31 6.8E-06 54.4 8.9 119 426-560 43-165 (572)
207 cd07034 TPP_PYR_PFOR_IOR-alpha 93.3 0.2 4.3E-06 45.7 6.2 105 439-556 52-158 (160)
208 PF00676 E1_dh: Dehydrogenase 93.3 0.43 9.2E-06 48.6 9.1 106 100-209 112-224 (300)
209 PRK11269 glyoxylate carboligas 93.3 0.94 2E-05 50.9 12.7 120 426-560 43-166 (591)
210 cd02001 TPP_ComE_PpyrDC Thiami 93.2 3.5 7.7E-05 37.5 14.2 140 59-210 14-155 (157)
211 cd02009 TPP_SHCHC_synthase Thi 93.2 2.6 5.5E-05 39.1 13.6 122 83-210 42-175 (175)
212 PRK06456 acetolactate synthase 93.2 0.36 7.8E-06 54.0 9.2 119 426-560 44-166 (572)
213 PRK12474 hypothetical protein; 93.2 0.39 8.5E-06 52.9 9.4 107 441-560 56-166 (518)
214 PRK06882 acetolactate synthase 93.2 0.33 7.2E-06 54.3 8.9 106 441-559 55-164 (574)
215 TIGR03181 PDH_E1_alph_x pyruva 93.1 0.58 1.3E-05 48.5 9.9 112 93-210 130-246 (341)
216 cd02005 TPP_PDC_IPDC Thiamine 93.1 3.3 7.2E-05 38.7 14.2 112 95-211 56-175 (183)
217 PF02779 Transket_pyr: Transke 93.0 0.72 1.6E-05 43.0 9.6 118 84-211 49-174 (178)
218 PRK06048 acetolactate synthase 93.0 0.34 7.3E-06 54.1 8.6 107 440-559 57-167 (561)
219 TIGR02720 pyruv_oxi_spxB pyruv 92.8 0.43 9.4E-06 53.3 9.1 119 426-560 39-160 (575)
220 PRK07064 hypothetical protein; 92.6 0.66 1.4E-05 51.5 10.2 108 441-559 54-166 (544)
221 PF02552 CO_dh: CO dehydrogena 92.6 0.14 3E-06 46.8 3.9 51 242-292 24-75 (167)
222 TIGR03457 sulphoacet_xsc sulfo 92.5 0.45 9.9E-06 53.2 8.8 107 441-560 52-161 (579)
223 cd02003 TPP_IolD Thiamine pyro 92.5 0.59 1.3E-05 44.7 8.3 146 61-211 17-185 (205)
224 PRK07282 acetolactate synthase 92.5 0.4 8.6E-06 53.5 8.2 119 426-560 49-171 (566)
225 TIGR02418 acolac_catab acetola 92.4 0.45 9.7E-06 52.8 8.6 105 442-559 50-158 (539)
226 PRK06457 pyruvate dehydrogenas 92.4 0.47 1E-05 52.8 8.7 119 426-560 40-161 (549)
227 PRK06112 acetolactate synthase 92.4 0.57 1.2E-05 52.4 9.4 118 426-559 50-171 (578)
228 cd02010 TPP_ALS Thiamine pyrop 92.4 0.91 2E-05 42.3 9.3 111 96-211 55-171 (177)
229 PRK08617 acetolactate synthase 92.4 0.5 1.1E-05 52.6 8.9 119 426-560 43-165 (552)
230 PRK08978 acetolactate synthase 92.4 0.4 8.8E-06 53.3 8.1 108 440-560 50-161 (548)
231 PRK11892 pyruvate dehydrogenas 92.4 5.8 0.00013 42.9 16.5 146 44-206 142-309 (464)
232 PRK08527 acetolactate synthase 92.3 0.46 9.9E-06 53.0 8.5 108 440-560 53-164 (563)
233 PRK08155 acetolactate synthase 92.3 1.6 3.5E-05 48.7 12.7 119 425-559 51-173 (564)
234 cd02015 TPP_AHAS Thiamine pyro 92.2 1.1 2.4E-05 42.0 9.8 111 94-211 55-175 (186)
235 PRK08327 acetolactate synthase 92.2 0.43 9.4E-06 53.3 8.1 114 440-559 62-181 (569)
236 cd02008 TPP_IOR_alpha Thiamine 92.1 1.7 3.7E-05 40.4 10.8 111 95-208 57-175 (178)
237 PRK08199 thiamine pyrophosphat 92.0 1.7 3.8E-05 48.3 12.6 118 426-559 47-168 (557)
238 CHL00099 ilvB acetohydroxyacid 92.0 0.6 1.3E-05 52.3 8.9 118 426-559 52-173 (585)
239 TIGR00173 menD 2-succinyl-5-en 91.9 0.37 8E-06 51.8 6.8 105 442-560 52-167 (432)
240 cd07036 TPP_PYR_E1-PDHc-beta_l 91.7 9 0.0002 35.2 14.9 146 47-208 4-166 (167)
241 PRK12571 1-deoxy-D-xylulose-5- 91.4 1.7 3.6E-05 49.1 11.6 150 45-211 320-480 (641)
242 PRK11866 2-oxoacid ferredoxin 91.4 2.7 5.9E-05 42.1 11.8 154 46-208 18-190 (279)
243 cd00568 TPP_enzymes Thiamine p 91.3 1.6 3.5E-05 39.9 9.6 110 94-208 51-167 (168)
244 PRK08273 thiamine pyrophosphat 90.9 0.85 1.9E-05 51.2 8.8 119 426-560 43-165 (597)
245 PRK06154 hypothetical protein; 90.9 1.1 2.5E-05 49.9 9.7 118 426-560 55-177 (565)
246 PRK06546 pyruvate dehydrogenas 90.8 0.76 1.6E-05 51.4 8.1 106 441-559 54-162 (578)
247 TIGR00204 dxs 1-deoxy-D-xylulo 90.7 9.4 0.0002 43.0 16.7 151 44-211 310-471 (617)
248 PRK07092 benzoylformate decarb 90.5 0.97 2.1E-05 50.0 8.7 120 426-560 49-172 (530)
249 cd02000 TPP_E1_PDC_ADC_BCADC T 90.5 1.3 2.9E-05 44.8 9.0 99 108-212 127-230 (293)
250 PRK05899 transketolase; Review 90.5 2.7 5.7E-05 47.6 12.2 115 84-210 368-486 (624)
251 TIGR03297 Ppyr-DeCO2ase phosph 90.4 0.49 1.1E-05 49.3 5.8 112 437-558 35-152 (361)
252 cd07033 TPP_PYR_DXS_TK_like Py 90.3 1.7 3.8E-05 39.4 8.7 101 440-556 51-154 (156)
253 COG1071 AcoA Pyruvate/2-oxoglu 89.8 2.9 6.4E-05 43.1 10.6 121 83-208 134-259 (358)
254 PRK05778 2-oxoglutarate ferred 89.7 5 0.00011 40.7 12.2 157 45-210 28-203 (301)
255 cd02002 TPP_BFDC Thiamine pyro 89.6 6.1 0.00013 36.5 12.1 133 67-208 25-177 (178)
256 cd07036 TPP_PYR_E1-PDHc-beta_l 89.5 2.5 5.4E-05 39.0 9.1 97 440-554 56-163 (167)
257 PRK12315 1-deoxy-D-xylulose-5- 89.5 2.9 6.2E-05 46.8 11.3 150 43-211 277-438 (581)
258 PRK05444 1-deoxy-D-xylulose-5- 89.4 3.2 6.9E-05 46.5 11.7 151 44-211 279-440 (580)
259 TIGR03182 PDH_E1_alph_y pyruva 89.4 2.1 4.5E-05 43.9 9.4 110 97-212 118-236 (315)
260 cd03375 TPP_OGFOR Thiamine pyr 89.4 7.4 0.00016 36.7 12.5 156 44-211 8-185 (193)
261 cd02014 TPP_POX Thiamine pyrop 89.2 18 0.0004 33.4 15.1 112 94-210 56-173 (178)
262 PRK06163 hypothetical protein; 88.9 22 0.00047 33.9 16.8 156 44-211 13-174 (202)
263 TIGR03394 indol_phenyl_DC indo 88.6 1.3 2.9E-05 48.9 7.9 109 442-560 52-166 (535)
264 cd03372 TPP_ComE Thiamine pyro 88.5 15 0.00033 34.1 13.8 106 94-211 47-156 (179)
265 TIGR03846 sulfopy_beta sulfopy 88.1 4.5 9.8E-05 37.8 10.0 107 94-211 47-157 (181)
266 PRK12270 kgd alpha-ketoglutara 88.1 2.3 5.1E-05 48.9 9.2 95 456-560 650-754 (1228)
267 PRK09124 pyruvate dehydrogenas 87.8 1.8 4E-05 48.3 8.5 106 442-560 55-163 (574)
268 cd03371 TPP_PpyrDC Thiamine py 87.5 5.8 0.00013 37.3 10.4 107 94-211 53-164 (188)
269 COG3958 Transketolase, C-termi 87.4 7.3 0.00016 38.7 11.0 155 45-211 8-170 (312)
270 PRK09628 oorB 2-oxoglutarate-a 87.4 20 0.00044 35.9 14.6 153 47-210 28-201 (277)
271 CHL00144 odpB pyruvate dehydro 87.2 17 0.00037 37.4 14.4 154 44-211 4-176 (327)
272 PLN02582 1-deoxy-D-xylulose-5- 87.2 6.3 0.00014 44.6 12.1 151 44-211 356-517 (677)
273 PRK13012 2-oxoacid dehydrogena 87.1 18 0.00039 42.2 15.8 178 82-283 573-762 (896)
274 PLN02374 pyruvate dehydrogenas 87.1 3.9 8.5E-05 43.7 9.9 96 108-209 224-324 (433)
275 PRK11869 2-oxoacid ferredoxin 86.2 12 0.00025 37.6 12.2 154 45-208 18-191 (280)
276 CHL00149 odpA pyruvate dehydro 86.2 5.5 0.00012 41.3 10.3 96 108-209 158-258 (341)
277 PLN02683 pyruvate dehydrogenas 85.7 33 0.00072 35.8 15.7 155 40-208 23-196 (356)
278 PLN02573 pyruvate decarboxylas 85.1 2.4 5.1E-05 47.5 7.5 122 426-560 55-183 (578)
279 PLN02225 1-deoxy-D-xylulose-5- 84.8 21 0.00046 40.4 14.5 153 43-211 380-542 (701)
280 cd02018 TPP_PFOR Thiamine pyro 84.7 8.2 0.00018 37.8 10.2 88 121-212 103-205 (237)
281 TIGR03336 IOR_alpha indolepyru 83.2 6.8 0.00015 44.0 10.1 117 95-212 409-532 (595)
282 PF02779 Transket_pyr: Transke 82.9 7.7 0.00017 36.0 8.8 104 440-557 60-171 (178)
283 PRK07449 2-succinyl-5-enolpyru 82.2 15 0.00033 40.9 12.4 122 83-210 416-549 (568)
284 COG2609 AceE Pyruvate dehydrog 81.9 6.4 0.00014 43.6 8.6 82 434-520 191-287 (887)
285 cd03376 TPP_PFOR_porB_like Thi 81.7 18 0.00039 35.3 11.2 94 114-211 87-201 (235)
286 TIGR02177 PorB_KorB 2-oxoacid: 80.5 14 0.00031 37.1 10.2 151 46-209 12-185 (287)
287 COG1029 FwdB Formylmethanofura 80.5 2.8 6.2E-05 42.6 5.1 45 238-283 65-109 (429)
288 cd01460 vWA_midasin VWA_Midasi 80.3 10 0.00022 37.7 9.0 85 455-544 166-256 (266)
289 PRK09212 pyruvate dehydrogenas 79.9 63 0.0014 33.2 15.1 154 44-211 4-176 (327)
290 TIGR03186 AKGDH_not_PDH alpha- 79.5 1.2E+02 0.0027 35.5 18.3 183 81-282 559-753 (889)
291 PLN02269 Pyruvate dehydrogenas 79.1 16 0.00035 38.1 10.5 110 92-209 145-258 (362)
292 PRK10886 DnaA initiator-associ 78.5 15 0.00033 34.7 9.2 102 44-145 28-149 (196)
293 PLN02980 2-oxoglutarate decarb 78.2 5.2 0.00011 50.4 7.6 117 426-558 340-466 (1655)
294 PRK11892 pyruvate dehydrogenas 77.7 15 0.00033 39.7 10.0 95 440-554 201-308 (464)
295 PLN02234 1-deoxy-D-xylulose-5- 77.2 93 0.002 35.2 16.2 152 44-211 357-518 (641)
296 PRK11864 2-ketoisovalerate fer 76.7 19 0.0004 36.5 9.7 123 82-208 63-205 (300)
297 PRK13936 phosphoheptose isomer 76.6 24 0.00052 33.4 10.1 100 45-144 31-150 (197)
298 TIGR03393 indolpyr_decarb indo 76.3 9.6 0.00021 42.3 8.4 108 441-560 52-167 (539)
299 PRK11867 2-oxoglutarate ferred 75.6 17 0.00037 36.6 9.2 159 45-211 27-203 (286)
300 PLN02683 pyruvate dehydrogenas 74.6 23 0.00049 37.0 10.1 99 439-555 85-194 (356)
301 COG4032 Predicted thiamine-pyr 73.7 8 0.00017 34.0 5.3 97 442-554 56-159 (172)
302 PRK00414 gmhA phosphoheptose i 73.7 30 0.00066 32.5 9.9 100 44-144 31-150 (192)
303 PRK11865 pyruvate ferredoxin o 73.4 34 0.00074 34.6 10.6 87 56-144 36-130 (299)
304 COG0075 Serine-pyruvate aminot 72.1 17 0.00036 38.2 8.3 37 454-493 56-92 (383)
305 TIGR00441 gmhA phosphoheptose 71.3 34 0.00073 30.9 9.3 97 48-144 2-118 (154)
306 smart00861 Transket_pyr Transk 70.7 25 0.00055 32.1 8.5 104 440-556 61-164 (168)
307 PRK09212 pyruvate dehydrogenas 70.3 33 0.00071 35.4 10.0 37 511-554 133-170 (327)
308 cd02016 TPP_E1_OGDC_like Thiam 69.1 36 0.00078 33.8 9.5 95 108-208 141-244 (265)
309 cd01453 vWA_transcription_fact 68.9 26 0.00055 32.7 8.2 70 453-544 107-179 (183)
310 cd02012 TPP_TK Thiamine pyroph 68.6 39 0.00085 33.3 9.9 108 95-211 111-228 (255)
311 PRK13937 phosphoheptose isomer 67.6 41 0.00089 31.5 9.4 100 45-144 26-145 (188)
312 PRK13761 hypothetical protein; 67.3 11 0.00025 35.8 5.3 50 237-287 52-101 (248)
313 PRK05261 putative phosphoketol 65.9 1.7E+02 0.0036 34.0 15.1 114 83-209 450-580 (785)
314 cd02007 TPP_DXS Thiamine pyrop 65.4 43 0.00094 31.6 9.1 98 95-209 81-189 (195)
315 PTZ00182 3-methyl-2-oxobutanat 64.1 39 0.00086 35.2 9.2 37 511-554 164-201 (355)
316 PRK13938 phosphoheptose isomer 63.9 40 0.00087 31.9 8.4 101 44-145 32-153 (196)
317 cd05007 SIS_Etherase N-acetylm 62.8 38 0.00083 33.5 8.5 101 45-145 37-158 (257)
318 KOG4166 Thiamine pyrophosphate 61.6 52 0.0011 34.6 9.1 102 443-559 144-251 (675)
319 PRK11916 electron transfer fla 59.6 34 0.00073 34.9 7.5 101 255-359 196-311 (312)
320 PRK03363 fixB putative electro 57.8 29 0.00062 35.5 6.6 101 255-359 197-312 (313)
321 PLN00022 electron transfer fla 56.9 31 0.00067 35.9 6.8 102 255-360 239-354 (356)
322 COG1701 Uncharacterized protei 56.1 25 0.00054 33.2 5.3 50 237-287 54-103 (256)
323 PF08121 Toxin_33: Waglerin fa 55.5 8.9 0.00019 21.3 1.4 14 6-19 4-17 (22)
324 PRK07119 2-ketoisovalerate fer 55.0 17 0.00037 37.9 4.6 49 440-490 60-108 (352)
325 PF13580 SIS_2: SIS domain; PD 54.9 63 0.0014 28.5 7.7 95 45-140 23-138 (138)
326 PF13519 VWA_2: von Willebrand 53.0 30 0.00064 31.0 5.5 71 453-542 99-171 (172)
327 CHL00144 odpB pyruvate dehydro 52.9 87 0.0019 32.2 9.4 40 510-555 132-171 (327)
328 PRK09444 pntB pyridine nucleot 50.6 15 0.00032 39.1 3.3 39 242-280 296-334 (462)
329 PF12804 NTP_transf_3: MobA-li 50.4 1.7E+02 0.0037 25.9 10.1 96 42-140 22-123 (160)
330 PF02603 Hpr_kinase_N: HPr Ser 50.1 16 0.00034 31.9 2.9 48 239-289 67-114 (127)
331 PF01855 POR_N: Pyruvate flavo 48.7 20 0.00044 34.8 3.8 50 440-491 48-97 (230)
332 COG2204 AtoC Response regulato 48.2 3.9E+02 0.0085 28.9 14.3 137 114-286 59-198 (464)
333 cd05006 SIS_GmhA Phosphoheptos 48.0 1.3E+02 0.0028 27.6 9.1 101 45-145 21-141 (177)
334 COG0794 GutQ Predicted sugar p 47.9 68 0.0015 30.4 7.0 38 108-145 88-126 (202)
335 PRK13685 hypothetical protein; 44.2 1.3E+02 0.0028 30.9 9.2 83 454-544 194-287 (326)
336 COG0021 TktA Transketolase [Ca 43.9 1.6E+02 0.0034 33.0 9.8 157 43-209 356-520 (663)
337 PF02233 PNTB: NAD(P) transhyd 43.8 18 0.00038 38.8 2.7 39 242-280 297-335 (463)
338 PRK08659 2-oxoglutarate ferred 43.1 38 0.00083 35.6 5.1 50 440-491 60-109 (376)
339 COG0054 RibH Riboflavin syntha 42.8 1.7E+02 0.0037 26.3 8.2 65 51-115 35-117 (152)
340 PRK08366 vorA 2-ketoisovalerat 42.3 37 0.0008 35.9 4.8 46 440-487 61-106 (390)
341 TIGR00239 2oxo_dh_E1 2-oxoglut 42.2 1E+02 0.0022 36.4 8.6 95 108-208 344-447 (929)
342 PRK13982 bifunctional SbtC-lik 41.9 97 0.0021 33.7 7.9 90 388-488 234-341 (475)
343 COG0541 Ffh Signal recognition 41.6 47 0.001 35.2 5.3 48 239-286 114-161 (451)
344 TIGR00274 N-acetylmuramic acid 41.5 1E+02 0.0022 31.2 7.6 100 45-144 45-165 (291)
345 cd08663 DAP_dppA_1 Peptidase M 41.3 76 0.0017 31.5 6.5 139 48-197 40-204 (266)
346 PRK05441 murQ N-acetylmuramic 40.7 1.5E+02 0.0031 30.2 8.7 101 45-145 50-171 (299)
347 PF00766 ETF_alpha: Electron t 40.6 27 0.00059 28.1 2.7 42 254-295 8-51 (86)
348 cd08769 DAP_dppA_2 Peptidase M 40.5 30 0.00064 34.5 3.5 139 48-198 40-205 (270)
349 COG1013 PorB Pyruvate:ferredox 39.8 3.8E+02 0.0082 27.1 11.4 60 83-143 65-126 (294)
350 PRK09404 sucA 2-oxoglutarate d 38.7 1.7E+02 0.0037 34.7 9.7 95 108-208 343-446 (924)
351 PRK12570 N-acetylmuramic acid- 38.3 1.7E+02 0.0037 29.6 8.8 101 45-145 46-167 (296)
352 COG5242 TFB4 RNA polymerase II 38.3 92 0.002 29.7 6.1 68 456-545 157-227 (296)
353 TIGR02717 AcCoA-syn-alpha acet 38.2 4.7E+02 0.01 28.2 12.6 44 242-288 390-434 (447)
354 COG0552 FtsY Signal recognitio 37.7 61 0.0013 33.2 5.2 48 239-286 153-200 (340)
355 TIGR03127 RuMP_HxlB 6-phospho 37.5 1.6E+02 0.0035 26.9 8.0 89 47-145 20-112 (179)
356 cd02974 AhpF_NTD_N Alkyl hydro 37.4 75 0.0016 26.1 4.9 43 535-578 5-47 (94)
357 COG2025 FixB Electron transfer 36.9 1.3E+02 0.0027 30.8 7.4 101 256-360 198-312 (313)
358 PF04951 Peptidase_M55: D-amin 36.5 15 0.00032 36.5 0.7 140 48-199 40-206 (265)
359 cd02774 MopB_Res-Cmplx1_Nad11- 36.2 39 0.00085 35.4 3.8 36 244-279 213-252 (366)
360 cd01455 vWA_F11C1-5a_type Von 35.7 2E+02 0.0042 27.1 8.0 71 453-544 111-186 (191)
361 PF07085 DRTGG: DRTGG domain; 35.7 37 0.00081 28.2 3.0 34 251-288 60-93 (105)
362 TIGR00853 pts-lac PTS system, 35.2 34 0.00073 28.2 2.5 37 252-288 3-39 (95)
363 COG3958 Transketolase, C-termi 35.2 4.9E+02 0.011 26.3 11.0 101 440-555 61-164 (312)
364 PRK05333 NAD-dependent deacety 34.9 39 0.00084 34.1 3.5 38 238-287 5-42 (285)
365 COG3960 Glyoxylate carboligase 34.9 52 0.0011 33.3 4.1 51 505-560 113-166 (592)
366 cd05005 SIS_PHI Hexulose-6-pho 34.2 2.3E+02 0.0049 26.0 8.3 89 47-145 23-115 (179)
367 COG0777 AccD Acetyl-CoA carbox 33.6 48 0.001 32.8 3.6 63 432-494 129-210 (294)
368 cd05564 PTS_IIB_chitobiose_lic 33.2 42 0.00091 27.6 2.8 33 254-286 1-33 (96)
369 COG1737 RpiR Transcriptional r 33.2 2.8E+02 0.006 27.8 9.3 93 47-145 120-217 (281)
370 PF00448 SRP54: SRP54-type pro 32.5 68 0.0015 30.3 4.5 45 241-286 17-62 (196)
371 cd06578 HemD Uroporphyrinogen- 32.0 3.4E+02 0.0074 25.6 9.6 60 44-103 82-143 (239)
372 KOG2487 RNA polymerase II tran 31.4 1.2E+02 0.0025 30.0 5.8 69 455-545 170-240 (314)
373 PRK05579 bifunctional phosphop 31.3 1.9E+02 0.0042 30.6 8.1 144 388-543 169-339 (399)
374 PRK02947 hypothetical protein; 31.2 1.4E+02 0.003 29.3 6.6 97 45-143 28-144 (246)
375 cd02072 Glm_B12_BD B12 binding 31.1 56 0.0012 28.6 3.3 27 52-79 102-128 (128)
376 COG0362 Gnd 6-phosphogluconate 30.2 44 0.00095 35.0 2.9 114 389-520 81-203 (473)
377 COG0279 GmhA Phosphoheptose is 30.1 4.4E+02 0.0096 24.2 9.1 100 45-145 29-149 (176)
378 PRK09590 celB cellobiose phosp 30.1 45 0.00098 28.0 2.5 37 253-289 2-38 (104)
379 PRK11382 frlB fructoselysine-6 29.6 1.8E+02 0.0039 30.0 7.5 95 48-145 33-132 (340)
380 TIGR00162 conserved hypothetic 29.6 4.3E+02 0.0092 24.7 9.3 25 45-69 34-58 (188)
381 PRK11337 DNA-binding transcrip 28.9 3.1E+02 0.0067 27.4 9.0 95 47-145 130-227 (292)
382 cd06311 PBP1_ABC_sugar_binding 28.8 5.4E+02 0.012 24.8 15.8 151 39-211 105-273 (274)
383 KOG0081 GTPase Rab27, small G 28.5 76 0.0017 28.7 3.7 39 252-290 122-165 (219)
384 PF13380 CoA_binding_2: CoA bi 28.4 89 0.0019 26.6 4.2 39 48-87 69-107 (116)
385 TIGR00114 lumazine-synth 6,7-d 28.4 3E+02 0.0066 24.4 7.6 27 49-75 21-51 (138)
386 cd05014 SIS_Kpsf KpsF-like pro 28.2 1.8E+02 0.0039 24.7 6.2 39 107-145 48-87 (128)
387 PRK09622 porA pyruvate flavodo 27.8 82 0.0018 33.5 4.6 50 440-491 68-117 (407)
388 PF07905 PucR: Purine cataboli 27.8 1.4E+02 0.003 25.7 5.3 49 240-288 59-107 (123)
389 COG1208 GCD1 Nucleoside-diphos 27.7 3.5E+02 0.0075 28.2 9.2 48 43-90 31-82 (358)
390 PF06711 DUF1198: Protein of u 27.6 42 0.00091 29.5 1.9 31 255-285 11-41 (148)
391 PRK10892 D-arabinose 5-phospha 27.5 3.1E+02 0.0067 27.9 8.8 93 49-145 38-134 (326)
392 cd05005 SIS_PHI Hexulose-6-pho 27.5 97 0.0021 28.5 4.6 46 238-285 19-64 (179)
393 KOG0225 Pyruvate dehydrogenase 27.3 5.3E+02 0.011 26.6 9.7 105 99-209 177-286 (394)
394 cd02771 MopB_NDH-1_NuoG2-N7 Mo 27.2 92 0.002 33.7 5.1 44 239-282 252-295 (472)
395 PRK08367 porA pyruvate ferredo 27.0 84 0.0018 33.3 4.5 45 440-486 62-106 (394)
396 TIGR03599 YloV DAK2 domain fus 26.9 2.8E+02 0.006 30.7 8.6 71 45-115 321-395 (530)
397 cd05565 PTS_IIB_lactose PTS_II 26.5 62 0.0013 26.9 2.7 34 254-287 2-35 (99)
398 cd02772 MopB_NDH-1_NuoG2 MopB_ 26.3 64 0.0014 34.2 3.6 37 239-275 238-274 (414)
399 TIGR03710 OAFO_sf 2-oxoacid:ac 26.2 80 0.0017 35.2 4.4 51 440-492 249-299 (562)
400 PRK11302 DNA-binding transcrip 26.2 3.6E+02 0.0079 26.7 8.9 88 47-140 118-210 (284)
401 PRK08811 uroporphyrinogen-III 26.1 3.6E+02 0.0077 26.8 8.6 96 45-140 100-227 (266)
402 COG3142 CutC Uncharacterized p 26.1 1.2E+02 0.0025 29.4 4.7 41 238-282 154-195 (241)
403 COG1938 Archaeal enzymes of AT 26.0 3.4E+02 0.0074 26.6 8.0 89 45-145 94-182 (244)
404 cd06348 PBP1_ABC_ligand_bindin 26.0 1.5E+02 0.0032 30.3 6.1 54 244-299 57-110 (344)
405 TIGR00723 ttdB_fumA_fumB hydro 25.9 1.5E+02 0.0032 27.2 5.3 103 18-139 54-158 (168)
406 PRK06091 membrane protein FdrA 25.7 2.5E+02 0.0054 31.1 7.8 71 44-115 203-288 (555)
407 PLN00125 Succinyl-CoA ligase [ 25.3 3.5E+02 0.0076 27.5 8.4 135 406-550 155-298 (300)
408 COG1282 PntB NAD/NADP transhyd 25.3 65 0.0014 33.2 3.0 39 242-280 298-336 (463)
409 PF10686 DUF2493: Protein of u 25.1 2.4E+02 0.0053 21.7 5.6 46 239-285 17-62 (71)
410 PRK05647 purN phosphoribosylgl 25.0 1.3E+02 0.0028 28.5 5.0 37 454-490 3-39 (200)
411 COG2086 FixA Electron transfer 25.0 1.2E+02 0.0025 30.2 4.7 42 247-288 105-146 (260)
412 PRK08285 cobH precorrin-8X met 24.8 1.4E+02 0.003 28.6 5.0 53 239-291 137-191 (208)
413 PLN02404 6,7-dimethyl-8-ribity 24.6 4.1E+02 0.0089 23.7 7.6 26 50-75 29-58 (141)
414 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.5 2.7E+02 0.0059 23.4 6.7 38 107-144 47-85 (126)
415 PRK09627 oorA 2-oxoglutarate-a 24.5 1.1E+02 0.0023 32.3 4.7 49 440-490 59-107 (375)
416 KOG1250 Threonine/serine dehyd 24.2 8.7E+02 0.019 25.7 10.9 156 82-284 89-246 (457)
417 COG1154 Dxs Deoxyxylulose-5-ph 24.1 1E+03 0.023 26.6 16.2 152 42-210 314-476 (627)
418 TIGR00521 coaBC_dfp phosphopan 24.0 2.7E+02 0.0059 29.5 7.6 66 425-494 201-277 (390)
419 cd01465 vWA_subgroup VWA subgr 23.6 2.1E+02 0.0045 25.5 6.1 25 511-540 146-170 (170)
420 KOG0369 Pyruvate carboxylase [ 23.4 7.1E+02 0.015 28.2 10.4 140 32-205 82-231 (1176)
421 cd02761 MopB_FmdB-FwdB The Mop 22.9 1.1E+02 0.0025 32.3 4.7 44 238-281 221-268 (415)
422 TIGR00789 flhB_rel flhB C-term 22.7 96 0.0021 24.8 3.0 32 253-287 16-47 (82)
423 PRK13398 3-deoxy-7-phosphohept 22.5 1.7E+02 0.0036 29.2 5.4 52 238-289 39-100 (266)
424 cd00281 DAP_dppA Peptidase M55 22.4 46 0.001 33.0 1.4 139 48-197 40-203 (265)
425 PTZ00187 succinyl-CoA syntheta 22.4 3.5E+02 0.0075 27.7 7.7 133 406-545 174-314 (317)
426 PF02006 DUF137: Protein of un 22.3 68 0.0015 29.3 2.3 36 251-287 3-38 (178)
427 PRK09405 aceE pyruvate dehydro 22.2 1.4E+03 0.03 27.2 17.1 121 81-208 564-694 (891)
428 cd06344 PBP1_ABC_ligand_bindin 22.2 1.8E+02 0.004 29.5 5.9 56 244-301 56-111 (332)
429 COG0182 Predicted translation 22.0 97 0.0021 31.5 3.5 48 473-520 203-263 (346)
430 TIGR00627 tfb4 transcription f 22.0 4E+02 0.0087 26.7 7.9 71 453-544 146-221 (279)
431 PRK04175 rpl7ae 50S ribosomal 21.6 3.3E+02 0.007 23.5 6.4 86 467-576 33-119 (122)
432 PRK00481 NAD-dependent deacety 21.5 92 0.002 30.4 3.3 25 241-265 2-26 (242)
433 PRK11557 putative DNA-binding 21.5 6.3E+02 0.014 24.9 9.6 92 48-144 119-214 (278)
434 TIGR01501 MthylAspMutase methy 21.4 1.1E+02 0.0025 26.9 3.5 29 50-79 102-130 (134)
435 TIGR03677 rpl7ae 50S ribosomal 21.3 5.2E+02 0.011 22.0 8.5 86 468-576 30-115 (117)
436 PRK11302 DNA-binding transcrip 21.2 1.2E+02 0.0025 30.3 4.1 46 238-285 114-159 (284)
437 PRK09130 NADH dehydrogenase su 20.8 1.2E+02 0.0025 34.8 4.4 38 243-280 428-469 (687)
438 COG0496 SurE Predicted acid ph 20.5 7.5E+02 0.016 24.4 9.2 81 70-150 16-100 (252)
439 PRK04175 rpl7ae 50S ribosomal 20.4 2.3E+02 0.005 24.4 5.2 44 244-287 37-80 (122)
440 cd05009 SIS_GlmS_GlmD_2 SIS (S 20.2 1.4E+02 0.003 26.2 4.1 45 240-285 1-45 (153)
441 PRK05678 succinyl-CoA syntheta 20.2 5E+02 0.011 26.2 8.3 80 11-91 120-209 (291)
442 PF04405 ScdA_N: Domain of Unk 20.1 98 0.0021 22.7 2.4 36 43-83 2-43 (56)
No 1
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=5.1e-97 Score=813.65 Aligned_cols=547 Identities=90% Similarity=1.433 Sum_probs=447.1
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhh
Q 044559 39 VNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGG 118 (585)
Q Consensus 39 ~~~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~ 118 (585)
+....++++++|++.|+++||+||||+||+++++|+++|.+..+|++|.+|||++|+||||||||+||.|||++|+|||+
T Consensus 11 ~~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg~gv~~~t~GpG~ 90 (578)
T PLN02573 11 VSSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGVGACVVTFTVGG 90 (578)
T ss_pred cccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhCCCeEEEecCccH
Confidence 34445799999999999999999999999999999999965457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhh
Q 044559 119 LSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK 198 (585)
Q Consensus 119 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~ 198 (585)
+|+++||++||.+++|||+|+|+.+....+++..+||.....++.++.++|+++|||+.++.+++++++.+++|++.|++
T Consensus 91 ~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~ 170 (578)
T PLN02573 91 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALK 170 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998877777667766543345567899999999999999999999999999999999
Q ss_pred cCCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHH
Q 044559 199 ESKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADA 278 (585)
Q Consensus 199 ~~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 278 (585)
++|||||+||.|++..+.+.....+.+....+......+.+..+++++++|.+||||+|++|.|+.++++.+++++|||+
T Consensus 171 ~~gPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~ 250 (578)
T PLN02573 171 ESKPVYISVSCNLAAIPHPTFSREPVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACKAFVELADA 250 (578)
T ss_pred cCCCEEEEeehhhhcCccccccCCCCCcccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHHHHHHHHHH
Confidence 99999999999997643211111111111111111112356779999999999999999999999999999999999999
Q ss_pred hCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceec
Q 044559 279 CGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIA 337 (585)
Q Consensus 279 ~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~ 337 (585)
+|+||+||++|||+||++||+++|.+.|..+... .+.+|..+.++.++||||.|+..++
T Consensus 251 ~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~ 330 (578)
T PLN02573 251 SGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTIG 330 (578)
T ss_pred hCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEEC
Confidence 9999999999999999999999998744433221 1223433445678999999999997
Q ss_pred cCCccccccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccc
Q 044559 338 NGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNC 417 (585)
Q Consensus 338 ~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~ 417 (585)
+...+...+++.+|++|.+.++.....|..|++...............++++.++++.|++.++++++++.|+|++++..
T Consensus 331 ~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iiv~D~G~~~~~~ 410 (578)
T PLN02573 331 NGPAFGCVLMKDFLEALAKRVKKNTTAYENYKRIFVPEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVIAETGDSWFNC 410 (578)
T ss_pred CcceECCcCHHHHHHHHHHHhhccccccccccccccCcccCCCCCCCCccCHHHHHHHHHHhcCCCCEEEEecccchhhH
Confidence 32233344789999999988764322222332211111100111123469999999999999999999999999985433
Q ss_pred ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeee
Q 044559 418 QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVE 497 (585)
Q Consensus 418 ~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~ 497 (585)
.+++.+++.+++.+.++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++||+||++|++.+.
T Consensus 411 ~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~ 490 (578)
T PLN02573 411 QKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVE 490 (578)
T ss_pred HhccCCCCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEe
Confidence 45667777778899999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred ecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHHHHhhhh
Q 044559 498 IHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAA 577 (585)
Q Consensus 498 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~~ 577 (585)
.++..+.++.++||.++|++||...+.+++++|++.+||+++|+++++...++|+||||.+++++.+..+..|..+++..
T Consensus 491 ~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~lieV~v~~~~~~~~~~~~~~~~~~~ 570 (578)
T PLN02573 491 IHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFIEVIVHKDDTSKELLEWGSRVSAA 570 (578)
T ss_pred ecccCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEEEEEcCcCCCCHHHHHHHHHHhhc
Confidence 44445666678999999999972111128999999999999999998312689999999999999999999999999999
Q ss_pred cCCCCCCC
Q 044559 578 NSRPPNPQ 585 (585)
Q Consensus 578 ~~~~~~~~ 585 (585)
|++++|||
T Consensus 571 ~~~~~~~~ 578 (578)
T PLN02573 571 NSRPPNPQ 578 (578)
T ss_pred ccCCCCCC
Confidence 99999998
No 2
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.8e-96 Score=790.28 Aligned_cols=498 Identities=27% Similarity=0.373 Sum_probs=410.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
+|+++++|++.|+++||++|||+||+.+++++|+|.+. +||+|.+|||++|+|||+||||+||+ |||++|+|||++|+
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~-~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~ 79 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDS-GIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNL 79 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhC-CCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHH
Confidence 48999999999999999999999999999999999886 89999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++|+.|++|||+||||.++...+++. + |..||..|++++|||++++.+++++++.+++||++|.++ |
T Consensus 80 ~tgla~A~~d~~Pll~itGqv~~~~~g~~a-----f---Qe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrp 151 (550)
T COG0028 80 LTGLADAYMDSVPLLAITGQVPTSLIGTDA-----F---QEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRP 151 (550)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccccCcch-----h---hhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999887762 3 355899999999999999999999999999999999997 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++..+......... ......+..... +++++++++|.+||||+|++|+|+.++++.++|++|+|+++
T Consensus 152 Gpv~i~iP~Dv~~~~~~~~~~~~~--~~~~~~p~~~~~-~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~ 228 (550)
T COG0028 152 GPVVVDLPKDVLAAEAEEPGPEPA--ILPPYRPAPPPP-EAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLG 228 (550)
T ss_pred ceEEEEcChhHhhccccccccccc--ccccCCCCCCcH-HHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHC
Confidence 999999999998753222111111 111111111122 78999999999999999999999999999999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCC----------c-----cccc-----ccccCCCccEEEEcCCcceeccCC
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTA----------F-----FSVG-----YSLLLKKEKAVILQPDRVVIANGP 340 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~----------~-----~~~~-----~~~~~~~~~~i~vd~d~~~i~~~~ 340 (585)
+||++|++|||++|++||+++|... ..+.. . ..+. |..|.++.++||||+|+.+++ +.
T Consensus 229 ~Pv~~t~~gkg~~p~~hp~~lG~~g-~~g~~~a~~~~~~aDlll~vG~rf~~~~~~~~~f~~~~~ii~iDidp~ei~-k~ 306 (550)
T COG0028 229 APVVTTLMGKGAVPEDHPLSLGMLG-MHGTKAANEALEEADLLLAVGARFDDRVTGYSGFAPPAAIIHIDIDPAEIG-KN 306 (550)
T ss_pred CCEEEccCcCccCCCCCcccccccc-ccccHHHHHHhhcCCEEEEecCCCcccccchhhhCCcCCEEEEeCChHHhC-CC
Confidence 9999999999999999999999873 33220 0 1122 444554434999999999997 43
Q ss_pred cccc----ccHHHHHHHHHHHhccC-cchhhhhccccCCCC-CCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccc
Q 044559 341 AFGC----VLMKDFLKALSKRLKSN-TTAYENYHRIYVPEG-QPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSW 414 (585)
Q Consensus 341 ~~~~----~~~~~~l~~L~~~l~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~ 414 (585)
+..+ .|++.+|++|.+.++.. ..|+....+.+.... ...........+|.++++.|++.+++|++++.|+|++.
T Consensus 307 ~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~l~~~~~~daiv~~d~G~~~ 386 (550)
T COG0028 307 YPVDVPIVGDAKATLEALLEELKPERAAWLEELLEARAAYRDLALEELADDGIKPQYVIKVLRELLPDDAIVVTDVGQHQ 386 (550)
T ss_pred CCCCeeEeccHHHHHHHHHHhhhhcchHHHHHHHHHHHhhhhhhhhccCCCccCHHHHHHHHHHhCCCCeEEEeCCcHHH
Confidence 3333 38999999999988753 222221111100000 00011112223799999999999999999999999998
Q ss_pred ccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcce
Q 044559 415 FNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT 493 (585)
Q Consensus 415 ~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~ 493 (585)
.|. .++...++++++.++++|+||||+|+|||||++.|+|+||+|+|||||+|++|||+|++||++|+++||+||++|+
T Consensus 387 ~w~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN~~~g 466 (550)
T COG0028 387 MWAARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNGGYG 466 (550)
T ss_pred HHHHHhcccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEEEEECCccc
Confidence 875 4455556667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeee----cCCC--cCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCC
Q 044559 494 IEVEI----HDGP--YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKD 561 (585)
Q Consensus 494 ~~~~~----~~~~--~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~ 561 (585)
|.++. +.+. ..++.++.|.++||+||+ ++++|++++||+++|+++++ .++|+||||.||++
T Consensus 467 ~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~-----~g~~v~~~~el~~al~~al~--~~~p~lidv~id~~ 533 (550)
T COG0028 467 MVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGA-----KGIRVETPEELEEALEEALA--SDGPVLIDVVVDPE 533 (550)
T ss_pred cchHHHHHhcCCCcceeecCCccHHHHHHHcCC-----eeEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecCc
Confidence 94332 2222 234443339999999999 99999999999999999997 99999999999998
No 3
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=1.6e-91 Score=772.26 Aligned_cols=504 Identities=19% Similarity=0.225 Sum_probs=408.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhc-Cc-cEEEEeCChhhHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLS 120 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~t-g~-~v~~~tsGpG~~n 120 (585)
+|+++++|++.|+++||+||||+||+++.+|+++|.++++|++|.+|||++|+||||||||+| |+ |||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 589999999999999999999999999999999997555799999999999999999999999 88 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++||++||.+++|||+|+|+.+....+++. + |..||.++|+++|||++++.+++++++.|++|++.|+++
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~-----~---q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~ 153 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKED-----F---QAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGR 153 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCc-----c---cccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999987655432 2 345889999999999999999999999999999999986
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+.+. ..+........ .+.++++.+++++++|.+||||+|++|.|+.++++.++|.+|||++
T Consensus 154 ~GPV~l~iP~Dv~~~~~~~--~~~~~~~~~~~--~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~ 229 (588)
T TIGR01504 154 PGPVLIDLPFDVQVAEIEF--DPDTYEPLPVY--KPAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELT 229 (588)
T ss_pred CCeEEEEeCcchhhcccCC--cccccccccCC--CCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHh
Confidence 6999999999997643221 10000001111 1123467899999999999999999999999999999999999999
Q ss_pred CCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceecc
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIAN 338 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~ 338 (585)
++||+||++|||+||++||+++|++.+..+... .+.+|..+.++.++||||.|+..++
T Consensus 230 g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~- 308 (588)
T TIGR01504 230 GVPVIPTLMGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIG- 308 (588)
T ss_pred CCCeEEcCccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhc-
Confidence 999999999999999999999998742222110 1223333456678999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccC------c--chhh-hhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 044559 339 GPAFGC----VLMKDFLKALSKRLKSN------T--TAYE-NYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETA 405 (585)
Q Consensus 339 ~~~~~~----~~~~~~l~~L~~~l~~~------~--~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~i 405 (585)
+.+..+ .|++.+|++|.+.+... . ..|. .+.+.+.. ..........++++.++++.|++.++++++
T Consensus 309 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~p~~~~~~l~~~l~~d~i 387 (588)
T TIGR01504 309 RVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRT-LLRKTHFDNVPVKPQRVYEEMNKAFGRDVC 387 (588)
T ss_pred CcCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHh-CcccccCCCCCcCHHHHHHHHHHhCCCCCE
Confidence 333232 38899999998866321 0 1121 11111000 000011223469999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEE
Q 044559 406 VIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTII 484 (585)
Q Consensus 406 iv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~i 484 (585)
++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++
T Consensus 388 vv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~ 467 (588)
T TIGR01504 388 YVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYIH 467 (588)
T ss_pred EEECCcHHHHHHHHhccccCCCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEE
Confidence 999999998764 4566666667998999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcceeeeee----cCCC-----cC-------CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC-C-
Q 044559 485 FLINNGGYTIEVEI----HDGP-----YN-------VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG-P- 546 (585)
Q Consensus 485 vV~NN~~~~~~~~~----~~~~-----~~-------~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~-~- 546 (585)
||+||++|++.+.. +.+. +. +..++||.++|++||+ ++.+|++++||+++|+++++ .
T Consensus 468 iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~eL~~al~~a~~~~~ 542 (588)
T TIGR01504 468 VLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGC-----KAIRVFKPEEIAPAFEQAKALMA 542 (588)
T ss_pred EEEeCCchHHHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHHHHhhcc
Confidence 99999999983321 1111 11 1136999999999999 99999999999999999983 1
Q ss_pred CCCCeEEEEEEcCCCCChH
Q 044559 547 KKDCLCFIEVLVHKDDTSK 565 (585)
Q Consensus 547 ~~~gp~vIeV~v~~~~~~~ 565 (585)
..++|+||||.+++++.++
T Consensus 543 ~~~~p~lIeV~i~~~~~~~ 561 (588)
T TIGR01504 543 EHRVPVVVEVILERVTNIS 561 (588)
T ss_pred cCCCcEEEEEEeccccCCC
Confidence 2689999999999988853
No 4
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2.9e-90 Score=699.11 Aligned_cols=530 Identities=38% Similarity=0.643 Sum_probs=471.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHH
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 121 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~ 121 (585)
..+|++++|+++|.+.||+++||+||+.+++|+|.|...+++|||.+.||.+|+||||||||.+|.+++++|.|+|.+.+
T Consensus 2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~Gi~alvTTfGVGELSA 81 (557)
T COG3961 2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNGISALVTTFGVGELSA 81 (557)
T ss_pred CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcCceEEEEecccchhhh
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCC
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK 201 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~G 201 (585)
++||+++|++++|||+|+|.+++..+.++.++||++|.+++..+.+|++++|+....+++.+.+++.|+|+++.+...++
T Consensus 82 ~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~R 161 (557)
T COG3961 82 LNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRR 161 (557)
T ss_pred hcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCC
Q 044559 202 PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281 (585)
Q Consensus 202 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~ 281 (585)
||||.+|.|+... ++..+. .|.......+++....+.++.++++|.++|+|+|++|..+.+.+..+++.+|++++++
T Consensus 162 PvYI~lP~dva~~--~~~~p~-~Pl~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~ 238 (557)
T COG3961 162 PVYIGLPADVADL--PIEAPL-TPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGF 238 (557)
T ss_pred CeEEEcchHHhcC--cCCCCC-CccccccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCC
Confidence 9999999999775 332221 2222222224445566789999999999999999999999999999999999999999
Q ss_pred ceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccCC
Q 044559 282 AVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANGP 340 (585)
Q Consensus 282 Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~~ 340 (585)
|+++++||||.|+|.||.|+|.|.|..+.+. +|.+|+...+..++|+++.+...+. ..
T Consensus 239 p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~-~~ 317 (557)
T COG3961 239 PVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIK-DA 317 (557)
T ss_pred CeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEec-cc
Confidence 9999999999999999999999998877543 5666776666778999999999887 67
Q ss_pred ccccccHHHHHHHHHHHhccCcchh--hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccc
Q 044559 341 AFGCVLMKDFLKALSKRLKSNTTAY--ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQ 418 (585)
Q Consensus 341 ~~~~~~~~~~l~~L~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~ 418 (585)
.|..+.++++|+.|.+.+..+.... .++.+.. + .........+++..++|+.+..++.++++|++|.|+++|+..
T Consensus 318 ~f~~l~m~~~L~~L~~~i~~~~~~~~~~~~~~~~-p--~~~~~~~~~pLtq~~~w~~~~~fl~p~dviiaetGtS~FG~~ 394 (557)
T COG3961 318 VFTNLSMKDALQELAKKIDKRNLSAPPVAYPART-P--PTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGAL 394 (557)
T ss_pred ccCCeeHHHHHHHHHHHhhhcccCCCCccCCCCC-C--CCCCCCCCCcccHHHHHHHHHhhCCCCCEEEEccccccccce
Confidence 7777889999999998886654211 1111111 1 011223456799999999999999999999999999999999
Q ss_pred cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeee
Q 044559 419 KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI 498 (585)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
.+.+|++.+++.+.-||+|||++|+|+|+++|.|+||||+++|||||+|++||+.|..|++++.+|+|+||+||.+++.+
T Consensus 395 ~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStmiR~gl~p~ifvlNN~GYTIEr~I 474 (557)
T COG3961 395 DIRLPKGATFISQPLWGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNNDGYTIERAI 474 (557)
T ss_pred eeecCCCCeEEcccchhhcccccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHHHHcCCCcEEEEEcCCCcEEEehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC--CCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHHHHhhh
Q 044559 499 HD--GPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 499 ~~--~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~ 576 (585)
|+ .+|+++..|||.++.++||+++... .+++++.++|..+++.+++ ..+++.+|||+++..|.|+.|.+|.+..+.
T Consensus 475 Hg~~~~YNdI~~Wd~~~l~~afg~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~i~lIEv~lp~~D~P~~L~~~~~~~a~ 552 (557)
T COG3961 475 HGPTAPYNDIQSWDYTALPEAFGAKNGEA-KFRATTGEELALALDVAFA-NNDRIRLIEVMLPVLDAPELLIDQAKATAA 552 (557)
T ss_pred cCCCcCcccccccchhhhhhhcCCCCceE-EEeecChHHHHHHHHHHhc-CCCceEEEEEecCcccCCHHHHHHHHhhhh
Confidence 96 6899999999999999999965542 3889999999999999985 667899999999999999999999999998
Q ss_pred hcCC
Q 044559 577 ANSR 580 (585)
Q Consensus 577 ~~~~ 580 (585)
+|.+
T Consensus 553 ~n~k 556 (557)
T COG3961 553 QNNK 556 (557)
T ss_pred hhcC
Confidence 8754
No 5
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.3e-90 Score=764.84 Aligned_cols=505 Identities=20% Similarity=0.252 Sum_probs=407.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
++|++++|++.|+++||+||||+||+++++|+++|.+.++|++|.+|||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 82 (572)
T PRK08979 3 MLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNT 82 (572)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHH
Confidence 37999999999999999999999999999999999755579999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++||.+++|||+|+|+.+....+.+ .+ |..||..+|+++|||+.++++++++++.+++|++.|+++ +
T Consensus 83 l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~ 154 (572)
T PRK08979 83 ITGIATAYMDSIPMVVLSGQVPSNLIGND-----AF---QECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRP 154 (572)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCC-----CC---cccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999988765543 22 345889999999999999999999999999999999986 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++..+.+.....+.+....+..+...++++.+++++++|.+||||+|++|.|++++++.++|++|||+++
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~ 234 (572)
T PRK08979 155 GPVVIDLPKDCLNPAILHPYEYPESIKMRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLN 234 (572)
T ss_pred CcEEEecCHhHhhhhhcccccCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhC
Confidence 99999999999764221100001010001000111224567999999999999999999999998899999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccC
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANG 339 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~ 339 (585)
+||+||++|||+||++||+++|.+ |..+... .+.+|..+.++.++||||.|+..++ +
T Consensus 235 ~pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~ 312 (572)
T PRK08979 235 LPVVSTLMGLGAFPGTHKNSLGML-GMHGRYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSIS-K 312 (572)
T ss_pred CCEEEcccccccCCCCCcccccCC-ccCCCHHHHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999987 4433221 1223333455678999999999887 4
Q ss_pred Ccccc----ccHHHHHHHHHHHhccCc--------chh-hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 044559 340 PAFGC----VLMKDFLKALSKRLKSNT--------TAY-ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAV 406 (585)
Q Consensus 340 ~~~~~----~~~~~~l~~L~~~l~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii 406 (585)
.+..+ .|++.+|++|.+.+..+. ..| +.+...+...... ......++++.++++.|++.++++.++
T Consensus 313 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~d~iv 391 (572)
T PRK08979 313 TVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLA-YDKSSERIKPQQVIETLYKLTNGDAYV 391 (572)
T ss_pred ccCCceEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchh-ccCCCCCcCHHHHHHHHHHhcCCCeEE
Confidence 33323 388999999988765321 011 1111111010000 011234699999999999999999999
Q ss_pred EecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEE
Q 044559 407 IAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIF 485 (585)
Q Consensus 407 v~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~iv 485 (585)
+.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+|+||+++|||||+|++|||+|++||++|+++|
T Consensus 392 v~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpv~~v 471 (572)
T PRK08979 392 ASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKII 471 (572)
T ss_pred EECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHHcCCCeEEE
Confidence 99999987664 45666777779999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcceeeeee----cCCCcC--CC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEc
Q 044559 486 LINNGGYTIEVEI----HDGPYN--VI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLV 558 (585)
Q Consensus 486 V~NN~~~~~~~~~----~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v 558 (585)
|+||++|++.++. +.+.+. .+ .++||.++|++||+ ++++|++.+||+++|+++++ ..++|+||||.+
T Consensus 472 V~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~eL~~al~~a~~-~~~~p~lIev~i 545 (572)
T PRK08979 472 NLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGH-----VGIRISDPDELESGLEKALA-MKDRLVFVDINV 545 (572)
T ss_pred EEeCCccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh-cCCCcEEEEEEe
Confidence 9999999984321 233221 12 35899999999999 99999999999999999985 238999999999
Q ss_pred CCCCCh
Q 044559 559 HKDDTS 564 (585)
Q Consensus 559 ~~~~~~ 564 (585)
++++.+
T Consensus 546 ~~~~~~ 551 (572)
T PRK08979 546 DETEHV 551 (572)
T ss_pred CCcccc
Confidence 976643
No 6
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.6e-90 Score=761.39 Aligned_cols=519 Identities=20% Similarity=0.258 Sum_probs=414.3
Q ss_pred CCCCccccccCCCCCCccCCCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHH
Q 044559 22 PNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101 (585)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gy 101 (585)
|....+|+.|..+. .-+|+++++|++.|+++||+||||+||+++.+|+++|.+.++|++|.+|||++|+|||+||
T Consensus 4 ~~~~~~~~~~~~~~-----~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgY 78 (587)
T PRK06965 4 PSAEFSTAESLSPP-----AADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGY 78 (587)
T ss_pred CccccccccccCCC-----chhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHH
Confidence 34455666654332 1247999999999999999999999999999999999765679999999999999999999
Q ss_pred hHhcCc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeC
Q 044559 102 ARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVN 180 (585)
Q Consensus 102 ar~tg~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~ 180 (585)
+|+||+ +||++|+|||++|+++||++||.+++|||+|+|+.+....+++ .+ |..||..+|+++|||+.++.
T Consensus 79 ar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~l~~~itk~~~~v~ 150 (587)
T PRK06965 79 ARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQD-----AF---QECDTVGITRPIVKHNFLVK 150 (587)
T ss_pred HHHhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----Cc---ccccHHHHhcCCcceeEEeC
Confidence 999999 9999999999999999999999999999999999998866553 22 34689999999999999999
Q ss_pred ChhhHHHHHHHHHHHhhhc-CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEc
Q 044559 181 NLEDAHELIDTAVSTALKE-SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVA 259 (585)
Q Consensus 181 ~~~~~~~~l~~A~~~a~~~-~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~ 259 (585)
+++++++.+++|++.|+++ +|||||+||.|++..+.+.....+.+. ....+...++++.+++++++|.+||||+|++
T Consensus 151 ~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~ 228 (587)
T PRK06965 151 DVRDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPCEYEYPKSVEM--RSYNPVTKGHSGQIRKAVSLLLSAKRPYIYT 228 (587)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEEEeChhhhhChhccccCccccc--cCCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999997 699999999999764321101111110 0000101124667999999999999999999
Q ss_pred CCcccccchHHHHHHHHHHhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------cccccc
Q 044559 260 GPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYS 318 (585)
Q Consensus 260 G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~ 318 (585)
|.|+.++++.++|++|+|++|+||+||++|||+||++||+++|.+ |..+... .+.++.
T Consensus 229 G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~-G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~~~~~ 307 (587)
T PRK06965 229 GGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGML-GMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPA 307 (587)
T ss_pred CCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCChh
Confidence 999999999999999999999999999999999999999999986 4333211 111122
Q ss_pred ccCC-CccEEEEcCCcceeccCCccc----cccHHHHHHHHHHHhccCc-----chhhhhc----cccCCCCCCCCCCCC
Q 044559 319 LLLK-KEKAVILQPDRVVIANGPAFG----CVLMKDFLKALSKRLKSNT-----TAYENYH----RIYVPEGQPPKCEPK 384 (585)
Q Consensus 319 ~~~~-~~~~i~vd~d~~~i~~~~~~~----~~~~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~ 384 (585)
.+.+ +.++||||.|+..++ +.... ..|++.+|++|.+.+.... .....|. +.+....... ....
T Consensus 308 ~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 385 (587)
T PRK06965 308 HFASRPRKIIHIDIDPSSIS-KRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCLKY-DRES 385 (587)
T ss_pred hcCCCCceEEEEeCCHHHhC-CcCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhc-cccC
Confidence 3333 468999999999887 33222 2478999999988764321 0011111 1110000000 1113
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc
Q 044559 385 EPLRVNVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG 463 (585)
Q Consensus 385 ~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG 463 (585)
.++++..+++.|++.++++++++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++|.|+|+||+|+|||
T Consensus 386 ~~i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG 465 (587)
T PRK06965 386 EIIKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEG 465 (587)
T ss_pred CCcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcch
Confidence 469999999999999999999999999987664 4566666677999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeee----cCCCcC--CC-CCCChHHHHHHhcCCCCCceeEEEcCHHHH
Q 044559 464 SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI----HDGPYN--VI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEEL 536 (585)
Q Consensus 464 sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL 536 (585)
||+|++|||+|++||++|+++||+||++|++.++. +.+.+. .+ ..+||.++|++||+ ++++|++.+||
T Consensus 466 sf~m~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~~~~v~~~~eL 540 (587)
T PRK06965 466 SIQMCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGH-----VGMRIEKTSDV 540 (587)
T ss_pred hhhcCHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCC-----EEEEECCHHHH
Confidence 99999999999999999999999999999984322 223322 23 35899999999999 99999999999
Q ss_pred HHHHHhhcCCCCCCeEEEEEEcCCCCCh
Q 044559 537 IEAIENATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 537 ~~aL~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
+++|++++. ..++|+||||.+++++.+
T Consensus 541 ~~al~~a~~-~~~~p~lieV~i~~~~~~ 567 (587)
T PRK06965 541 EPALREALR-LKDRTVFLDFQTDPTENV 567 (587)
T ss_pred HHHHHHHHh-cCCCcEEEEEEecccccc
Confidence 999999984 247899999999987754
No 7
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=7e-90 Score=760.09 Aligned_cols=506 Identities=19% Similarity=0.247 Sum_probs=408.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
++|++|+|++.|+++||+||||+||+.+++|+++|.+.++|++|.+|||++|+|||+||+|+||+ |||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~ 82 (574)
T PRK07979 3 MLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhh
Confidence 47999999999999999999999999999999999754579999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++||.+++|||+|+|+.+....+++ .+ |..||..+++++|||+.++++++++++.|++||+.|.++ +
T Consensus 83 l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~ 154 (574)
T PRK07979 83 ITGIATAYMDSIPLVVLSGQVATSLIGYD-----AF---QECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRP 154 (574)
T ss_pred HHHHHHHhhcCCCEEEEECCCChhccCCC-----CC---ceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999998766554 22 345889999999999999999999999999999999997 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++....+.....+.+.......+...++++.+++++++|.+||||+|++|.|+.++++.++|++|||+++
T Consensus 155 GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~ 234 (574)
T PRK07979 155 GPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLN 234 (574)
T ss_pred CcEEEEcChhhhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHhC
Confidence 99999999999763211100001010000000111234667999999999999999999999998899999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccC
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANG 339 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~ 339 (585)
+||+||++|||+||++||+++|.+ |..+... .+.+|..+.++.++||||.|+..++ +
T Consensus 235 ~pv~tt~~gkg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~ 312 (574)
T PRK07979 235 LPVVSSLMGLGAFPATHRQSLGML-GMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSIS-K 312 (574)
T ss_pred CCEEEccccCCCCCCCCcccccCC-cCCCCHHHHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999986 4433211 1222333455678999999999887 3
Q ss_pred Ccccc----ccHHHHHHHHHHHhccCc-----chhhhh----ccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 044559 340 PAFGC----VLMKDFLKALSKRLKSNT-----TAYENY----HRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAV 406 (585)
Q Consensus 340 ~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii 406 (585)
.+..+ .|++.+|++|.+.+.... .....| .+.+.... ........++++..+++.|++.+++++++
T Consensus 313 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~~l~~d~iv 391 (574)
T PRK07979 313 TVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQC-LKYDTHSEKIKPQAVIETLWRLTKGDAYV 391 (574)
T ss_pred cccCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCh-hhccCCCCCcCHHHHHHHHHhhcCCCEEE
Confidence 33323 388999999988765321 001111 11100000 00011134699999999999999999999
Q ss_pred EecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEE
Q 044559 407 IAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIF 485 (585)
Q Consensus 407 v~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~iv 485 (585)
+.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++|+|+++||+++|||||+|++|||+|++||++|+++|
T Consensus 392 v~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v~iv 471 (574)
T PRK07979 392 TSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVL 471 (574)
T ss_pred EeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 99999987664 45666666779999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcceeeeee----cCCCcC--CC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC-CCCCCeEEEEEE
Q 044559 486 LINNGGYTIEVEI----HDGPYN--VI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG-PKKDCLCFIEVL 557 (585)
Q Consensus 486 V~NN~~~~~~~~~----~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~-~~~~gp~vIeV~ 557 (585)
|+||++|++.++. +.+.+. .+ ..+||.++|++||+ ++++|++.+||+++|+++++ .+.++|+||||.
T Consensus 472 V~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~g~~v~~~~eL~~al~~a~~~~~~~~p~lIeV~ 546 (574)
T PRK07979 472 NLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGH-----VGIQISHPDELESKLSEALEQVRNNRLVFVDVT 546 (574)
T ss_pred EEeCchhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHHHHhccCCCCcEEEEEE
Confidence 9999999984322 233221 22 45899999999999 99999999999999999985 114899999999
Q ss_pred cCCCCCh
Q 044559 558 VHKDDTS 564 (585)
Q Consensus 558 v~~~~~~ 564 (585)
+++++.+
T Consensus 547 i~~~~~~ 553 (574)
T PRK07979 547 VDGSEHV 553 (574)
T ss_pred ECCccCc
Confidence 9987644
No 8
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.2e-89 Score=758.12 Aligned_cols=505 Identities=21% Similarity=0.269 Sum_probs=406.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.+|||++|+||||||||+||+ +||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~ 82 (574)
T PRK06466 3 LLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 47999999999999999999999999999999999765689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++||.+++|||+|+|+.+....+++. .|..||..+|+++|||++++.+++++++.+++|++.|+++ +
T Consensus 83 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~--------~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~ 154 (574)
T PRK06466 83 ITGIATAYMDSIPMVVLSGQVPSTLIGEDA--------FQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRP 154 (574)
T ss_pred HHHHHHHHhcCCCEEEEecCCCccccCCCc--------ccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987665532 2346889999999999999999999999999999999987 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++....+.....+.+.......+...+..+.+++++++|.+||||+|++|.|+.++++.++|++|||++|
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g 234 (574)
T PRK06466 155 GPVVVDIPKDMTNPAEKFEYEYPKKVKLRSYSPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLN 234 (574)
T ss_pred CcEEEEcCHhHhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhC
Confidence 99999999999653111100000000000000111123567899999999999999999999998899999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccC
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANG 339 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~ 339 (585)
+||++|++|||+||++||+++|.+ |..+... .+.+|..+.++.++||||.|+..++ .
T Consensus 235 ~pv~tt~~~kg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~-~ 312 (574)
T PRK06466 235 LPVTNTLMGLGGFPGTDRQFLGML-GMHGTYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASIS-K 312 (574)
T ss_pred CCEEEcCccCCCCCCCChhhcCCC-ccccCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999987 4332211 1222333455668999999999887 3
Q ss_pred Ccccc----ccHHHHHHHHHHHhccCc-----chhhhh----ccccCCCCC-CCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 044559 340 PAFGC----VLMKDFLKALSKRLKSNT-----TAYENY----HRIYVPEGQ-PPKCEPKEPLRVNVLFQHIQKMLSSETA 405 (585)
Q Consensus 340 ~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~----~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~~l~~~~i 405 (585)
.+..+ .|++.+|++|.+.++... ..+..| ...+..... ......+.++++.++++.|++.++++.+
T Consensus 313 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~i 392 (574)
T PRK06466 313 TIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDKGDGGIIKPQQVVETLYEVTNGDAY 392 (574)
T ss_pred ccCCCeEEecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhcccCCCCCcCHHHHHHHHHhhCCCCeE
Confidence 33223 378999999988764321 011111 111101000 0011123469999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEE
Q 044559 406 VIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTII 484 (585)
Q Consensus 406 iv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~i 484 (585)
++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++
T Consensus 393 v~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpv~i 472 (574)
T PRK06466 393 VTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVKI 472 (574)
T ss_pred EEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEE
Confidence 999999987654 4555666667999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcceeeee----ecCCCcC--CC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCC-CCeEEEEE
Q 044559 485 FLINNGGYTIEVE----IHDGPYN--VI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKK-DCLCFIEV 556 (585)
Q Consensus 485 vV~NN~~~~~~~~----~~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~-~gp~vIeV 556 (585)
||+||++|++.+. .+++.+. .+ ..+||.++|++||+ ++.+|++.+||+++|+++++ . ++|+||||
T Consensus 473 vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~~p~lIev 545 (574)
T PRK06466 473 INLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGH-----VGIRITDLKDLKPKLEEAFA--MKDRLVFIDI 545 (574)
T ss_pred EEEeCCccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--cCCCcEEEEE
Confidence 9999999998432 1233322 22 45899999999999 99999999999999999985 4 89999999
Q ss_pred EcCCCCCh
Q 044559 557 LVHKDDTS 564 (585)
Q Consensus 557 ~v~~~~~~ 564 (585)
.+++++..
T Consensus 546 ~i~~~~~~ 553 (574)
T PRK06466 546 YVDRSEHV 553 (574)
T ss_pred EeCCcccc
Confidence 99987643
No 9
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.4e-89 Score=757.95 Aligned_cols=504 Identities=19% Similarity=0.265 Sum_probs=407.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhH
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 119 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~ 119 (585)
...||++++|++.|+++||+||||+||+++++|+++|.+.++|++|.+|||++|+|||+||+|+||+ +||++|+|||++
T Consensus 8 ~~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~ 87 (595)
T PRK09107 8 PRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGAT 87 (595)
T ss_pred hhhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHh
Confidence 3668999999999999999999999999999999999765689999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc
Q 044559 120 SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE 199 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~ 199 (585)
|+++||++||.+++|||+|+|+.+....+.+ .+ |..||..+++++|||++++++++++++.+++|++.|+++
T Consensus 88 N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~ 159 (595)
T PRK09107 88 NAVTPLQDALMDSIPLVCITGQVPTHLIGSD-----AF---QECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSG 159 (595)
T ss_pred HHHHHHHHHhhcCCCEEEEEcCCChhhcCCC-----CC---cccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999988765543 22 345889999999999999999999999999999999997
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccc--hHHHHHHHH
Q 044559 200 -SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAK--ACNAFVELA 276 (585)
Q Consensus 200 -~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~--a~~~l~~la 276 (585)
+|||||+||.|++..+.+.......+.. ....+...++.+.+++++++|.+||||+|++|.|+.+++ +.++|++|+
T Consensus 160 ~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~la 238 (595)
T PRK09107 160 RPGPVVVDIPKDVQFATGTYTPPQKAPVH-VSYQPKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELV 238 (595)
T ss_pred CCceEEEecCCChhhcccccccccccccc-cCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHHH
Confidence 6999999999997642111011000000 000111123456799999999999999999999998775 899999999
Q ss_pred HHhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcce
Q 044559 277 DACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVV 335 (585)
Q Consensus 277 e~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~ 335 (585)
|++|+||+||++|||+||++||+++|.+ |..+... .+..|..+.++.++||||.|+..
T Consensus 239 e~lg~pv~tt~~gkg~~p~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~ 317 (595)
T PRK09107 239 ELTGFPITSTLMGLGAYPASGKNWLGML-GMHGTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSS 317 (595)
T ss_pred HHHCCCEEECccccccCCCCCCcccCCC-CCCccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHH
Confidence 9999999999999999999999999987 3332211 12223334566789999999998
Q ss_pred eccCCcccc----ccHHHHHHHHHHHhccCc--------chh-hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCC-
Q 044559 336 IANGPAFGC----VLMKDFLKALSKRLKSNT--------TAY-ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLS- 401 (585)
Q Consensus 336 i~~~~~~~~----~~~~~~l~~L~~~l~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~- 401 (585)
++ +.+..+ .|++.+|++|.+.+.... ..| +.+.+.+....... .....++++..+++.|++.++
T Consensus 318 i~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~~l~~ 395 (595)
T PRK09107 318 IN-KNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLAY-TPSDDVIMPQYAIQRLYELTKG 395 (595)
T ss_pred hC-CCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhhc-cCCCCCcCHHHHHHHHHHhCCC
Confidence 87 333222 388999999988774321 011 11111110000000 111346999999999999997
Q ss_pred CCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCC
Q 044559 402 SETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQ 480 (585)
Q Consensus 402 ~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~l 480 (585)
++.+++.|+|++..|. .+++.+++.+|+.++++|+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++
T Consensus 396 ~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~l 475 (595)
T PRK09107 396 RDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNL 475 (595)
T ss_pred CCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHHhCC
Confidence 5888999999987765 456667777799999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCcceeeee----ecCCCcCC--C-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEE
Q 044559 481 KTIIFLINNGGYTIEVE----IHDGPYNV--I-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCF 553 (585)
Q Consensus 481 pv~ivV~NN~~~~~~~~----~~~~~~~~--~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~v 553 (585)
|+++||+||++|++.+. ++++.+.. . ..+||.++|++||+ ++++|++.+||+++|+++++ .++|+|
T Consensus 476 pvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~l 548 (595)
T PRK09107 476 PVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGA-----VGIRCEKPGDLDDAIQEMID--VDKPVI 548 (595)
T ss_pred CeEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEE
Confidence 99999999999998431 22333321 2 35899999999999 99999999999999999986 789999
Q ss_pred EEEEcCCCCC
Q 044559 554 IEVLVHKDDT 563 (585)
Q Consensus 554 IeV~v~~~~~ 563 (585)
|||.+++.+.
T Consensus 549 IeV~i~~~~~ 558 (595)
T PRK09107 549 FDCRVANLEN 558 (595)
T ss_pred EEEEecCccc
Confidence 9999997653
No 10
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=1.4e-88 Score=744.37 Aligned_cols=512 Identities=34% Similarity=0.509 Sum_probs=414.6
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 123 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~ 123 (585)
+|++++|++.|+++||++|||+||+++++|+++|.++++|++|.+|||++|+||||||+|+||.+||++|+|||++|+++
T Consensus 1 ~t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg~gv~~~t~GPG~~n~~~ 80 (539)
T TIGR03393 1 YTVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKGAAALLTTFGVGELSAIN 80 (539)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcCceEEEEecCccHHHHhh
Confidence 37899999999999999999999999999999997656899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcE
Q 044559 124 AIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPV 203 (585)
Q Consensus 124 ~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 203 (585)
||++||.+++|||+|+|+.+....+++.+.|+..+...+.+..++++++|||+..+ +++++++.+++|++.|.+++|||
T Consensus 81 gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~gPv 159 (539)
T TIGR03393 81 GIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVL-TEQNATAEIDRVITTALRERRPG 159 (539)
T ss_pred HHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999988876666666666555434545578999999999866 78999999999999999988999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCce
Q 044559 204 YISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAV 283 (585)
Q Consensus 204 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv 283 (585)
||+||.|++..+ ..... .+.............+..+++++++|.+||||+|++|.|+.++++.++|.+|||++++||
T Consensus 160 ~l~iP~Dv~~~~--~~~~~-~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv 236 (539)
T TIGR03393 160 YLMLPVDVAAKA--VTPPV-NPLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPH 236 (539)
T ss_pred EEEecccccCCc--cCCCC-cccCcCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHHHHHHhCCCE
Confidence 999999998743 21111 111000001111222345899999999999999999999998899999999999999999
Q ss_pred EeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccCCcc
Q 044559 284 AVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANGPAF 342 (585)
Q Consensus 284 ~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~~~~ 342 (585)
+||++|||+||++||+++|.+.|..+... .+.+|....+..++||+|+|+..++ ....
T Consensus 237 ~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~ 315 (539)
T TIGR03393 237 ATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLTPEQTIDVQPHAARVG-NVWF 315 (539)
T ss_pred EECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccccceeeccCCcccEEEEcCCeEEEC-ceEe
Confidence 99999999999999999998744333211 1222332123357999999998887 3333
Q ss_pred cc---ccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccc
Q 044559 343 GC---VLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQK 419 (585)
Q Consensus 343 ~~---~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~ 419 (585)
.+ .|+..+|.+|.+.+... |...... +.. .......++++..+++.|++.++++++++.|+|++.++..+
T Consensus 316 ~~~~i~D~~~~l~~l~~~l~~~---~~~~~~~--~~~--~~~~~~~~l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~ 388 (539)
T TIGR03393 316 TGIPMNDAIETLVELCEHAGLM---WSSSGAI--PFP--QPDESRSALSQENFWQTLQTFLRPGDIILADQGTSAFGAAD 388 (539)
T ss_pred CCcCHHHHHHHHHHHhhhcccc---ccccccc--CcC--CCCCCCCccCHHHHHHHHHHhcCCCCEEEEccCchhhhhhh
Confidence 23 36778888887765321 2111000 100 01112246999999999999999999999999998755556
Q ss_pred ccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeec
Q 044559 420 LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH 499 (585)
Q Consensus 420 ~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~ 499 (585)
+..+.+.+++.+.++|+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||++|+++||+||++|++.+..+
T Consensus 389 ~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~ 468 (539)
T TIGR03393 389 LRLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIH 468 (539)
T ss_pred ccCCCCCeEEechhhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeec
Confidence 66767677998999999999999999999999999999999999999999999999999999999999999999965443
Q ss_pred C--CCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHH
Q 044559 500 D--GPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEW 570 (585)
Q Consensus 500 ~--~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~ 570 (585)
. ..|.++..+||.++|++||+. +++++++|++.+||+++|+++++ .++|+||||.+++++.++.+.++
T Consensus 469 ~~~~~~~~~~~~df~~la~a~G~~-~~~~~~~v~~~~el~~al~~a~~--~~~p~liev~i~~~~~p~~~~~~ 538 (539)
T TIGR03393 469 GAEQRYNDIALWNWTHLPQALSLD-PQSECWRVSEAEQLADVLEKVAA--HERLSLIEVVLPKADIPPLLGAL 538 (539)
T ss_pred CCCCCcCcCCCCCHHHHHHHcCCC-CccceEEeccHHHHHHHHHHHhc--cCCeEEEEEEcCcccCCHHHHhc
Confidence 2 356677789999999999981 12248999999999999999986 89999999999999999876543
No 11
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=3.8e-89 Score=752.26 Aligned_cols=505 Identities=19% Similarity=0.267 Sum_probs=411.1
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
|+++++|++.|+++||+||||+||+++.+|+++|.+ ++|++|.+|||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~ 79 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRD-SSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLV 79 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHH
Confidence 689999999999999999999999999999999964 689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-CC
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-SK 201 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~G 201 (585)
+||++||.+++|||+|+|+++....+++. .|..||.++|+++|||++++++++++++.+++|++.|+++ +|
T Consensus 80 ~~i~~A~~~~~Pll~i~g~~~~~~~~~~~--------~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 151 (547)
T PRK08322 80 TGVAYAQLGGMPMVAITGQKPIKRSKQGS--------FQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPG 151 (547)
T ss_pred HHHHHHhhcCCCEEEEeccccccccCCCc--------cccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999987655431 2356899999999999999999999999999999999997 69
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCC
Q 044559 202 PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281 (585)
Q Consensus 202 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~ 281 (585)
||||+||.|++..+ .... +...... ....++.+.+++++++|.+||||+|++|.|+.++++.++|.+|||++++
T Consensus 152 PV~l~iP~dv~~~~--~~~~-~~~~~~~---~~~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~ 225 (547)
T PRK08322 152 AVHLELPEDIAAEE--TDGK-PLPRSYS---RRPYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGI 225 (547)
T ss_pred cEEEEcChhhhhCc--cccc-cccccCC---CCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCC
Confidence 99999999997642 2111 1111111 1112345679999999999999999999999888899999999999999
Q ss_pred ceEeCCCCccccCCCCCCccccccCCCCCCc-----------cc----------ccccccCCCccEEEEcCCcceeccCC
Q 044559 282 AVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF-----------FS----------VGYSLLLKKEKAVILQPDRVVIANGP 340 (585)
Q Consensus 282 Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~-----------~~----------~~~~~~~~~~~~i~vd~d~~~i~~~~ 340 (585)
||+||++|||.||++||+++|.+ |..+... .. ..|. ..++.++||||.|+..++ ..
T Consensus 226 pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~-~~~~~~~i~id~d~~~~~-~~ 302 (547)
T PRK08322 226 PFFTTQMGKGVIPETHPLSLGTA-GLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN-PNGDKKVIHINFLPAEVD-PV 302 (547)
T ss_pred CEEEccccCCcCCCCCchhccCC-CCCCCHHHHHHHHhCCEEEEECCCCccccccccC-CCCCCeEEEEeCCHHHcC-CC
Confidence 99999999999999999999976 3332211 11 1111 123568999999998886 33
Q ss_pred cccc----ccHHHHHHHHHHHhccCcc----hhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 044559 341 AFGC----VLMKDFLKALSKRLKSNTT----AYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGD 412 (585)
Q Consensus 341 ~~~~----~~~~~~l~~L~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~ 412 (585)
...+ .|++.+|++|.+.++.... ++..+++...............++++.++++.|++.++++++++.|+|+
T Consensus 303 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ii~~d~G~ 382 (547)
T PRK08322 303 YFPQVEVVGDIANSLWQLKERLADQPHWDFPRFLKIREAIEAHLEEGADDDRFPMKPQRIVADLRKVMPDDDIVILDNGA 382 (547)
T ss_pred cCCCeEEecCHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhhhcccCCCCCcCHHHHHHHHHHHCCCCeEEEECCcH
Confidence 3222 4889999999887754221 1122221110100000111223689999999999999999999999999
Q ss_pred cccccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCc
Q 044559 413 SWFNCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGG 491 (585)
Q Consensus 413 ~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~ 491 (585)
+..|.. ++...++.+++.+.++|+|||++|+|||+++++|+++|++++|||||+|+++||+|++||++|+++||+||++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN~~ 462 (547)
T PRK08322 383 YKIWFARNYRAYEPNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDNA 462 (547)
T ss_pred HHHHHHHhcccCCCCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHHhCCCeEEEEEeCCC
Confidence 876643 4555555668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeee----cCC-CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHH
Q 044559 492 YTIEVEI----HDG-PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKE 566 (585)
Q Consensus 492 ~~~~~~~----~~~-~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~ 566 (585)
|++.+.. +.. .+.++.++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++++.++.
T Consensus 463 ~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIev~v~~~~~~~~ 535 (547)
T PRK08322 463 YGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGA-----KGYRVESADDLLPTLEEALA--QPGVHVIDCPVDYSENDRV 535 (547)
T ss_pred cchHHHHHHhhcCCcccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecCccCcch
Confidence 9984322 111 2345567999999999999 99999999999999999986 7899999999999888776
Q ss_pred HHHHHHH
Q 044559 567 LLEWGSR 573 (585)
Q Consensus 567 ~~~~~~~ 573 (585)
+....++
T Consensus 536 ~~~~~~~ 542 (547)
T PRK08322 536 LNQELGE 542 (547)
T ss_pred hhhhhhh
Confidence 6665443
No 12
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=2e-88 Score=739.78 Aligned_cols=507 Identities=23% Similarity=0.360 Sum_probs=404.6
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHH
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLN 123 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~ 123 (585)
+.+++|++.|+++||++|||+||+++.+|++++.+.++|++|.+|||++|+|||+||||+||+ +||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 578999999999999999999999999999999765459999999999999999999999999 9999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcE
Q 044559 124 AIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPV 203 (585)
Q Consensus 124 ~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 203 (585)
||++||.+++|||+|+|+.++...+++.+.||..+ +..+|.++|+++|||+.++.+++++++.+++|++.|++++|||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~~gPv 158 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR--TLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARELSRPV 158 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeecc--chHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHCCCCE
Confidence 99999999999999999999887777655444321 2336889999999999999999999999999999999989999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCce
Q 044559 204 YISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAV 283 (585)
Q Consensus 204 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv 283 (585)
||+||.|++..+.+ ..... ..........+..+++++++|.+||||+|++|.|+.++++.++|++|||++|+||
T Consensus 159 ~i~iP~Dv~~~~~~--~~~~~----~~~~~~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv 232 (535)
T TIGR03394 159 YLEIPRDMVNAEVE--PVPDD----PAWPVDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPV 232 (535)
T ss_pred EEEechhhccCccC--CCCCC----CCCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCCCE
Confidence 99999999874321 11101 1111112234567899999999999999999999999899999999999999999
Q ss_pred EeCCCCccccCCCCCCccccccCCCCCCc------------------cccc--cc-ccCCCccEEEEcCCcceeccCCcc
Q 044559 284 AVMPSAKGLVPEHHPHFIGTYWGAVSTAF------------------FSVG--YS-LLLKKEKAVILQPDRVVIANGPAF 342 (585)
Q Consensus 284 ~tt~~gkg~~~~~hp~~~g~~~g~~~~~~------------------~~~~--~~-~~~~~~~~i~vd~d~~~i~~~~~~ 342 (585)
+||++|||+||++||+++|.+.|..+... .... +. .+.++.++||||.|+..++ ..+.
T Consensus 233 ~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~ 311 (535)
T TIGR03394 233 VTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLG-YHVY 311 (535)
T ss_pred EEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEEC-CeeE
Confidence 99999999999999999997545443221 1111 11 2334568999999999887 5555
Q ss_pred ccccHHHHHHHHHHHhccCcch-hhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCC--CEEEecCCcccccccc
Q 044559 343 GCVLMKDFLKALSKRLKSNTTA-YENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSE--TAVIAETGDSWFNCQK 419 (585)
Q Consensus 343 ~~~~~~~~l~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~--~iiv~d~G~~~~~~~~ 419 (585)
.++.+.++...|.+.+...... ...+.... ............++++.++++.|++.++++ .+++.|+|++.+|+..
T Consensus 312 ~~~~i~d~~~~L~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~~~ 390 (535)
T TIGR03394 312 ADIPLAGLVDALLALLCGLPPSDRTTRGKGP-HAYPRGLQADAEPIAPMDIARAVNDRFARHGQMPLAADIGDCLFTAMD 390 (535)
T ss_pred CCccHHHHHHHHHHhhhcccccccccccccc-cccccccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHHHh
Confidence 5554444444443332211100 00011000 000000011234699999999999999875 4689999998776654
Q ss_pred ccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeec
Q 044559 420 LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH 499 (585)
Q Consensus 420 ~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~ 499 (585)
++ ..+|+.++++|+|||++|+|||+++|.+ +++|+++|||||+|++|||+|++||++|+++||+||++|++.+..+
T Consensus 391 ~~---~~~~~~~~~~g~mG~glpaaiGa~lA~~-~r~v~i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~ 466 (535)
T TIGR03394 391 MD---DAGLMAPGYYAGMGFGVPAGIGAQCTSG-KRILTLVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRVFQ 466 (535)
T ss_pred cC---CCcEECcCccchhhhHHHHHHHHHhCCC-CCeEEEEeChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeehhc
Confidence 42 3458888999999999999999999976 4568899999999999999999999999999999999999965544
Q ss_pred C-CCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHH
Q 044559 500 D-GPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWG 571 (585)
Q Consensus 500 ~-~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~ 571 (585)
. ..++++.++||+++|++||+ ++++|++.+||.++|+++++ ..++|+||||.+++++.++.+.++.
T Consensus 467 ~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~-~~~~p~lIev~i~~~~~~~~~~~~~ 533 (535)
T TIGR03394 467 PESAFNDLDDWRFADMAAGMGG-----DGVRVRTRAELAAALDKAFA-TRGRFQLIEAMLPRGVLSDTLARFV 533 (535)
T ss_pred cCCCcccCCCCCHHHHHHHcCC-----CceEeCCHHHHHHHHHHHHh-cCCCeEEEEEECCcccCCHHHHHHh
Confidence 3 34667778999999999999 99999999999999999985 3456999999999999998877654
No 13
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=4.9e-89 Score=755.16 Aligned_cols=503 Identities=20% Similarity=0.238 Sum_probs=406.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhc-Cc-cEEEEeCChhhHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLS 120 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~t-g~-~v~~~tsGpG~~n 120 (585)
.|+++++|++.|+++||+||||+||+++.+|+++|.++++|++|.+|||++|+|||+||||+| |+ +||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N 82 (591)
T PRK11269 3 KMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (591)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH
Confidence 389999999999999999999999999999999997656899999999999999999999999 98 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++||++||.+++|||+|+|+.+....+++ . .|..||..+|+++|||++++.++++++++|++||+.|+++
T Consensus 83 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~---~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~ 154 (591)
T PRK11269 83 MITGLYSASADSIPILCITGQAPRARLHKE-----D---FQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGR 154 (591)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCC-----c---ccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999998765554 2 2356899999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+ .....+........ .+.++++.+++++++|.+||||+||+|.|+.++++.+++++|||++
T Consensus 155 ~GPV~l~iP~Dv~~~~--~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~ 230 (591)
T PRK11269 155 PGPVLIDLPFDVQVAE--IEFDPDTYEPLPVY--KPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELT 230 (591)
T ss_pred CCeEEEEeChhhhhcc--cccccccccccccC--CCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHHh
Confidence 6999999999997642 21111100001111 1123566799999999999999999999999889999999999999
Q ss_pred CCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceecc
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIAN 338 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~ 338 (585)
|+||+||++|||+||++||+++|.+....+... .+.+|..+.++.++||||.|+..++
T Consensus 231 g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~- 309 (591)
T PRK11269 231 GVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIG- 309 (591)
T ss_pred CCCeEecccccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhC-
Confidence 999999999999999999999998732212110 1222333455678999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccC------c--chh-hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 044559 339 GPAFGC----VLMKDFLKALSKRLKSN------T--TAY-ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETA 405 (585)
Q Consensus 339 ~~~~~~----~~~~~~l~~L~~~l~~~------~--~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~i 405 (585)
+.+..+ .|++.+|++|.+.++.. . ..| +.+...+.. ........+.++++..+++.|++.++++++
T Consensus 310 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~~l~~d~i 388 (591)
T PRK11269 310 RVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRT-LLRKTHFDNVPIKPQRVYEEMNKAFGRDTC 388 (591)
T ss_pred CCCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHh-chhhccCCCCCcCHHHHHHHHHHhcCCCcE
Confidence 322222 37899999998877431 0 112 112111100 000011123469999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEE
Q 044559 406 VIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTII 484 (585)
Q Consensus 406 iv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~i 484 (585)
++.|+|++..|. .++..+++..|+.++++|+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||++|+++
T Consensus 389 vv~d~g~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~~ 468 (591)
T PRK11269 389 YVSTIGLSQIAAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLPYIH 468 (591)
T ss_pred EEECCcHHHHHHHHhcccCCCCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHHhCCCeEE
Confidence 999999987654 4555656666888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcceeeeeec----CC-----CcCCC-------CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--C
Q 044559 485 FLINNGGYTIEVEIH----DG-----PYNVI-------KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--P 546 (585)
Q Consensus 485 vV~NN~~~~~~~~~~----~~-----~~~~~-------~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~ 546 (585)
||+||++|++.+..+ .. .|..+ +++||.++|++||+ ++.+|++++||+++|+++++ .
T Consensus 469 vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~~~~ 543 (591)
T PRK11269 469 VLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGC-----KAIRVFKPEDIAPALEQAKALMA 543 (591)
T ss_pred EEEeCCchhHHHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHhhcc
Confidence 999999999843211 11 11111 35999999999999 99999999999999999983 1
Q ss_pred CCCCeEEEEEEcCCCCCh
Q 044559 547 KKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 547 ~~~gp~vIeV~v~~~~~~ 564 (585)
+.++|+||||.+++++..
T Consensus 544 ~~~gp~lieV~v~~~~~~ 561 (591)
T PRK11269 544 EFRVPVVVEVILERVTNI 561 (591)
T ss_pred cCCCcEEEEEEeccccCC
Confidence 268999999999987753
No 14
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=4.1e-89 Score=751.43 Aligned_cols=501 Identities=20% Similarity=0.256 Sum_probs=407.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
..++++++|++.|+++||++|||+||+++++|+++|.+.++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 8 ~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 8 SPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 568999999999999999999999999999999999765689999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++||++||.+++|||+|+|+.+....+++ .+ |..||..+|+++|||+.++++++++++.+++|++.|+++
T Consensus 88 ~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~ 159 (566)
T PRK07282 88 AITGIADAMSDSVPLLVFTGQVARAGIGKD-----AF---QEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGR 159 (566)
T ss_pred HHHHHHHHhhcCCCEEEEecccccccCCCC-----Cc---cccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999888766554 22 235789999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+.+.......+. ....+...+++..+++++++|.+|+||+|++|.|+.++++.++|++|||++
T Consensus 160 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l 237 (566)
T PRK07282 160 PGPVVIDLPKDVSALETDFIYDPEVNL--PSYQPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERY 237 (566)
T ss_pred CCeEEEeCChhhhhhhhcccccccccc--cCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHh
Confidence 699999999999864321101000010 000111123456799999999999999999999999999999999999999
Q ss_pred CCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceecc
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIAN 338 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~ 338 (585)
++||+||++|||+||++||+++|.+ |..+... .+..+..+.++.++||||.|+..++
T Consensus 238 ~~pv~tt~~gkg~ip~~hpl~~G~~-G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~- 315 (566)
T PRK07282 238 QIPVVTTLLGQGTIATSHPLFLGMG-GMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIG- 315 (566)
T ss_pred CCCEEeccccCCCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999976 3333211 1122333455678999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc--chh-hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 044559 339 GPAFGC----VLMKDFLKALSKRLKSNT--TAY-ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETG 411 (585)
Q Consensus 339 ~~~~~~----~~~~~~l~~L~~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G 411 (585)
+....+ .|++.+|++|.+.++... ..| +.+.+.+.... .......++++.++++.|++.++++++++.|+|
T Consensus 316 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~~~~~~~ivv~d~G 393 (566)
T PRK07282 316 KIIKTDIPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKDKNRVR--SYDKKERVVQPQAVIERIGELTNGDAIVVTDVG 393 (566)
T ss_pred CCCCCCeEEecCHHHHHHHHHHhhcccCChHHHHHHHHHHHHhch--hccCcCCCcCHHHHHHHHHhhcCCCeEEEECCc
Confidence 332222 488999999988775421 122 11111110000 001123469999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCC
Q 044559 412 DSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490 (585)
Q Consensus 412 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 490 (585)
++..|. .++..+++.+|+.++++|+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||++|+++||+||+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~ 473 (566)
T PRK07282 394 QHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNH 473 (566)
T ss_pred HHHHHHHHhcccCCCCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCC
Confidence 987664 4566666777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeee----cCCCc--CCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCC
Q 044559 491 GYTIEVEI----HDGPY--NVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 491 ~~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
+|++.+.. +++.+ ..+ .++||.++|++||+ ++.+|++.+||+++|+. +. .++|+||||.+++++.
T Consensus 474 ~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~-~~--~~~p~lIeV~v~~~~~ 545 (566)
T PRK07282 474 SLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGI-----KHYKFDNPETLAQDLEV-IT--EDVPMLIEVDISRKEH 545 (566)
T ss_pred CchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHH-hc--CCCCEEEEEEeCCccc
Confidence 99984321 23322 223 46899999999999 99999999999999974 54 6899999999998765
Q ss_pred h
Q 044559 564 S 564 (585)
Q Consensus 564 ~ 564 (585)
+
T Consensus 546 ~ 546 (566)
T PRK07282 546 V 546 (566)
T ss_pred c
Confidence 3
No 15
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=9.4e-89 Score=755.68 Aligned_cols=501 Identities=22% Similarity=0.284 Sum_probs=405.9
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCCh
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIA---EPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTV 116 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGp 116 (585)
...++++++|++.|+++||+||||+||+++.+|+++|.+ ..+|++|.+|||++|+|||+||||+||+ |||++|+||
T Consensus 16 ~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~GP 95 (616)
T PRK07418 16 PQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSGP 95 (616)
T ss_pred CccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCc
Confidence 445899999999999999999999999999999999963 2369999999999999999999999999 999999999
Q ss_pred hhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHh
Q 044559 117 GGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTA 196 (585)
Q Consensus 117 G~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a 196 (585)
|++|+++||++|+.+++|||+|+|+.+....+++ .+ |..||..+|+++|||++++.+++++++.|++||+.|
T Consensus 96 G~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~-----~~---Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A 167 (616)
T PRK07418 96 GATNLVTGIATAQMDSVPMVVITGQVPRPAIGTD-----AF---QETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIA 167 (616)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecCCCccccCCC-----Cc---ccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998866554 22 235889999999999999999999999999999999
Q ss_pred hhc-CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHH
Q 044559 197 LKE-SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVEL 275 (585)
Q Consensus 197 ~~~-~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~l 275 (585)
+++ +|||||+||.|++..+.+.....+.............++++.+++++++|.+||||+|++|.|+.++++.++|++|
T Consensus 168 ~~~~~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~~l~~l 247 (616)
T PRK07418 168 SSGRPGPVLIDIPKDVGQEEFDYVPVEPGSVKPPGYRPTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAHAELKEL 247 (616)
T ss_pred hcCCCCcEEEecchhhhhchhcccccCccccccCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHHHHHHHH
Confidence 987 5999999999997643221100000000000001112456789999999999999999999999988999999999
Q ss_pred HHHhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcc
Q 044559 276 ADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRV 334 (585)
Q Consensus 276 ae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~ 334 (585)
||++++||++|++|||+||++||+++|.+ |..+... .+.+|..+.++.++||||.|+.
T Consensus 248 ae~l~~pV~tt~~gkg~~p~~hpl~~G~~-G~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 326 (616)
T PRK07418 248 AERFQIPVTTTLMGKGAFDEHHPLSVGML-GMHGTAYANFAVTECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPA 326 (616)
T ss_pred HHHHCCCEEEccCCCcCCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHH
Confidence 99999999999999999999999999976 3333211 1112333555678999999999
Q ss_pred eeccCCcccc----ccHHHHHHHHHHHhccCc-----chhh----hhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 044559 335 VIANGPAFGC----VLMKDFLKALSKRLKSNT-----TAYE----NYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLS 401 (585)
Q Consensus 335 ~i~~~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~ 401 (585)
.++ +.+..+ .|++.+|++|++.++... ..|. .|++.. . ........++++.++++.|++.++
T Consensus 327 ~ig-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~l~~~~v~~~l~~~~~ 401 (616)
T PRK07418 327 EVG-KNRRPDVPIVGDVRKVLVKLLERSLEPTTPPRTQAWLERINRWKQDY-P---LVVPPYEGEIYPQEVLLAVRDLAP 401 (616)
T ss_pred HhC-CccCCCeEEecCHHHHHHHHHHhhhccccccchHHHHHHHHHHHHhC-c---ccccCCCCCcCHHHHHHHHHhhCC
Confidence 887 433322 489999999998775422 1121 121110 0 001112356999999999999998
Q ss_pred CCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCc
Q 044559 402 SETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQK 481 (585)
Q Consensus 402 ~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lp 481 (585)
+++++.|+|++..|...+...++.+|+.+.++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|
T Consensus 402 -d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lp 480 (616)
T PRK07418 402 -DAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQYGIN 480 (616)
T ss_pred -CcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHHhCCC
Confidence 5999999999877764332234456898999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCcceeeeee----cCCCc--CCC--CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEE
Q 044559 482 TIIFLINNGGYTIEVEI----HDGPY--NVI--KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCF 553 (585)
Q Consensus 482 v~ivV~NN~~~~~~~~~----~~~~~--~~~--~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~v 553 (585)
+++||+||++|++.+.. +...+ .++ ..+||.++|++||+ ++++|++++||+++|+++++ .++|+|
T Consensus 481 vi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~g~~V~~~~el~~al~~a~~--~~~p~l 553 (616)
T PRK07418 481 VKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGV-----KGMVISERDQLKDAIAEALA--HDGPVL 553 (616)
T ss_pred eEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEE
Confidence 99999999999983221 12222 223 46899999999999 99999999999999999986 889999
Q ss_pred EEEEcCCCCC
Q 044559 554 IEVLVHKDDT 563 (585)
Q Consensus 554 IeV~v~~~~~ 563 (585)
|||.+++++.
T Consensus 554 IeV~i~~~~~ 563 (616)
T PRK07418 554 IDVHVRRDEN 563 (616)
T ss_pred EEEEecCccc
Confidence 9999998774
No 16
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=9.9e-89 Score=747.56 Aligned_cols=504 Identities=20% Similarity=0.227 Sum_probs=410.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhh
Q 044559 40 NPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGG 118 (585)
Q Consensus 40 ~~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~ 118 (585)
-..+++++++|++.|+++||+||||+||+++++|+++|.+ .+|++|.+|||++|+||||||||+||+ |||++|+|||+
T Consensus 11 ~~~~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~ 89 (570)
T PRK06725 11 QCEEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYE-SGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGA 89 (570)
T ss_pred hcccccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHh-cCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccH
Confidence 3456899999999999999999999999999999999975 479999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhh
Q 044559 119 LSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK 198 (585)
Q Consensus 119 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~ 198 (585)
+|+++||++||.+++|||+|+|+.+....+++ .+ |..||..+++++|||++++.+++++++.|++|++.|++
T Consensus 90 ~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s 161 (570)
T PRK06725 90 TNLVTGLADAYMDSIPLVVITGQVATPLIGKD-----GF---QEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAES 161 (570)
T ss_pred HHHHHHHHHHhhcCcCEEEEecCCCcccccCC-----CC---cccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988765543 22 34588999999999999999999999999999999999
Q ss_pred c-CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHH
Q 044559 199 E-SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELAD 277 (585)
Q Consensus 199 ~-~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae 277 (585)
+ +|||||+||.|++..+.+.......+ ..+......+++..+++++++|.+||||+|++|.|+.++++.++|.+|||
T Consensus 162 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae 239 (570)
T PRK06725 162 GRPGPVLIDIPKDVQNEKVTSFYNEVVE--IPGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFAR 239 (570)
T ss_pred CCCCcEEEccccchhhcccccccCcccc--cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHH
Confidence 7 69999999999986432110110000 00000111234567999999999999999999999999999999999999
Q ss_pred HhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCccee
Q 044559 278 ACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVI 336 (585)
Q Consensus 278 ~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i 336 (585)
++++||+||++|||.||++||+++|.+ |..+... .+.++..+.++.++||||.|+..+
T Consensus 240 ~~~~PV~tt~~~kg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i 318 (570)
T PRK06725 240 ENRIPVVSTLMGLGAYPPGDPLFLGML-GMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEF 318 (570)
T ss_pred HhCCCEEECCccCcCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHh
Confidence 999999999999999999999999987 4433211 112222344566899999999998
Q ss_pred ccCCcccc----ccHHHHHHHHHHHhccCc-chh-hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecC
Q 044559 337 ANGPAFGC----VLMKDFLKALSKRLKSNT-TAY-ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAET 410 (585)
Q Consensus 337 ~~~~~~~~----~~~~~~l~~L~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~ 410 (585)
+ ..+..+ .|+..+|++|.+.+.... ..| +.+...+.... ........++++.++++.|++.++++++++.|+
T Consensus 319 ~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~l~~d~iiv~d~ 396 (570)
T PRK06725 319 H-KNVAVEYPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWKEEYP-LSYKQKESELKPQHVINLVSELTNGEAIVTTEV 396 (570)
T ss_pred C-CCCCCCeEEecCHHHHHHHHHHhccccCcHHHHHHHHHHHHhCh-hhhcccCCCcCHHHHHHHHHhhCCCCcEEEeCC
Confidence 7 333322 378999999988775421 112 11111110000 000112346999999999999999999999999
Q ss_pred Ccccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeC
Q 044559 411 GDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489 (585)
Q Consensus 411 G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN 489 (585)
|++..|. .++..+.+.+|+.+.++|+|||++|+|||+++|+|+++||+++|||||+|+++||+|++||++|+++||+||
T Consensus 397 g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~vV~NN 476 (570)
T PRK06725 397 GQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINN 476 (570)
T ss_pred cHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEEEEEC
Confidence 9987664 456666667799999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccceeeeee----cCCCc--CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCC
Q 044559 490 GGYTIEVEI----HDGPY--NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 490 ~~~~~~~~~----~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
++|++.+.. +++.+ .++.++||.++|++||+ ++.+|++.+||.++|+++++ .++|+||||.+++++.
T Consensus 477 ~~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~~p~liev~id~~~~ 549 (570)
T PRK06725 477 KFLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGV-----KGLRATNSTEAKQVMLEAFA--HEGPVVVDFCVEEGEN 549 (570)
T ss_pred CccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCccc
Confidence 999984322 23333 34467999999999999 99999999999999999986 8999999999998765
Q ss_pred h
Q 044559 564 S 564 (585)
Q Consensus 564 ~ 564 (585)
+
T Consensus 550 ~ 550 (570)
T PRK06725 550 V 550 (570)
T ss_pred c
Confidence 4
No 17
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=1.9e-88 Score=746.78 Aligned_cols=501 Identities=23% Similarity=0.305 Sum_probs=407.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
..|+++++|++.|+++||++|||+||+++++|+++|.+ ++|++|.||||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 6 ~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n 84 (561)
T PRK06048 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYD-SDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATN 84 (561)
T ss_pred ccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhh-CCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 34899999999999999999999999999999999965 589999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++||++||.+++|||+|+|+.+....+.+ .+ |..||..+|+++|||++++++++++++.+++|++.|+++
T Consensus 85 ~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~ 156 (561)
T PRK06048 85 LVTGIATAYMDSVPIVALTGQVPRSMIGND-----AF---QEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGR 156 (561)
T ss_pred HHHHHHHHhhcCCCEEEEeccCCccccCCC-----Cc---cccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988755543 12 245889999999999999999999999999999999987
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+.+.......+. ....+...++.+.+++++++|.+||||+|++|.|++++++.++|++|||++
T Consensus 157 ~GPV~l~iP~dv~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~l 234 (561)
T PRK06048 157 PGPVLIDLPKDVTTAEIDFDYPDKVEL--RGYKPTYKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETI 234 (561)
T ss_pred CCeEEEecChhhhhcccccccCccccc--ccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHHHHHHh
Confidence 699999999999764311100110000 000011123456799999999999999999999999989999999999999
Q ss_pred CCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceecc
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIAN 338 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~ 338 (585)
|+||+||++|||+||++||+++|.+ |..+... .+..|..+.++.++||||.|+..++
T Consensus 235 g~pV~tt~~~kg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~- 312 (561)
T PRK06048 235 PAPVTTTLMGIGAIPTEHPLSLGML-GMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEIS- 312 (561)
T ss_pred CCCEEEccccCccCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999986 4333211 1112233455678999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc-chh-hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 044559 339 GPAFGC----VLMKDFLKALSKRLKSNT-TAY-ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGD 412 (585)
Q Consensus 339 ~~~~~~----~~~~~~l~~L~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~ 412 (585)
..+..+ .|++.+|++|.+.+.... ..| +.+........... .....++++..+++.|++.+| +++++.|+|+
T Consensus 313 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~~~p-~~iiv~d~g~ 390 (561)
T PRK06048 313 KNVKVDVPIVGDAKQVLKSLIKYVQYCDRKEWLDKINQWKKEYPLKY-KEREDVIKPQYVIEQIYELCP-DAIIVTEVGQ 390 (561)
T ss_pred CCCCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHhChhhc-cCCCCCcCHHHHHHHHHhhCC-CcEEEEcCcH
Confidence 333322 478999999998875432 122 11111110000000 112346899999999999998 7999999999
Q ss_pred ccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCc
Q 044559 413 SWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGG 491 (585)
Q Consensus 413 ~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~ 491 (585)
+..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||++|+++||+||++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~ 470 (561)
T PRK06048 391 HQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVAILNNGY 470 (561)
T ss_pred HHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHHcCCCeEEEEEECCc
Confidence 87654 45566666779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeee----cCCCc--CCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCCh
Q 044559 492 YTIEVEI----HDGPY--NVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 492 ~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
|++.+.. ++..+ .++ +++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++++.+
T Consensus 471 y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~t~~el~~al~~a~~--~~~p~liev~~~~~~~~ 543 (561)
T PRK06048 471 LGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGA-----LGLRVEKPSEVRPAIEEAVA--SDRPVVIDFIVECEENV 543 (561)
T ss_pred cHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEecCcccc
Confidence 9984322 22333 233 57999999999999 99999999999999999986 88999999999987754
No 18
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=7.3e-89 Score=749.15 Aligned_cols=496 Identities=21% Similarity=0.291 Sum_probs=406.9
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
||++++|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~ 79 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYD-GGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLI 79 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 689999999999999999999999999999999975 489999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-CC
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-SK 201 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~G 201 (585)
+||++|+.+++|||+|+|+++....+++ .+ |..||..+|+++|||++++++++++++++++|++.|+++ +|
T Consensus 80 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 151 (548)
T PRK08978 80 TGLADALLDSVPVVAITGQVSSPLIGTD-----AF---QEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPG 151 (548)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCC-----CC---cccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998765543 22 345899999999999999999999999999999999996 69
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCC
Q 044559 202 PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281 (585)
Q Consensus 202 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~ 281 (585)
||||+||.|++..+.+ ...+.. ... ....++++.+++++++|.+||||+|++|.|+.++++.+++++|||++|+
T Consensus 152 PV~l~iP~dv~~~~~~--~~~~~~--~~~--~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~ 225 (548)
T PRK08978 152 PVLVDIPKDIQLAEGE--LEPHLT--TVE--NEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGM 225 (548)
T ss_pred cEEEecChhhhhcccc--cccccc--ccC--CCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCC
Confidence 9999999999764322 111110 000 1112345679999999999999999999999988899999999999999
Q ss_pred ceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccCC
Q 044559 282 AVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANGP 340 (585)
Q Consensus 282 Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~~ 340 (585)
||+||++|||+||++||+++|.+ |..+... .+..+..+.++.++||||.|+..++ +.
T Consensus 226 Pv~tt~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 303 (548)
T PRK08978 226 PAVATLKGLGAVEADHPYYLGML-GMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEIN-KL 303 (548)
T ss_pred CEEEccccCCCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhC-CC
Confidence 99999999999999999999976 3332211 1112333556678999999999887 33
Q ss_pred ccc----cccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccc
Q 044559 341 AFG----CVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFN 416 (585)
Q Consensus 341 ~~~----~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~ 416 (585)
+.. ..|++.+|++|.+.+.... +.+.+.+.+....... .....++++..+++.|++.++++++++.|+|++..|
T Consensus 304 ~~~~~~i~~d~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~ 381 (548)
T PRK08978 304 RQAHVALQGDLNALLPALQQPLNIDA-WRQHCAQLRAEHAWRY-DHPGEAIYAPALLKQLSDRKPADTVVTTDVGQHQMW 381 (548)
T ss_pred CCCCeEEecCHHHHHHHHHHhccchH-HHHHHHHHHHhCchhc-cCCCCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHH
Confidence 222 2489999999987653221 2122211110000000 112346899999999999999999999999998766
Q ss_pred c-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 417 C-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 417 ~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
. .++...++.+|+.++++|+|||++|+|||++++.|+++||+++|||||+|++|||+|++||++|+++||+||++|++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~ 461 (548)
T PRK08978 382 VAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMV 461 (548)
T ss_pred HHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 4 455566667799999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred eee----cCCCc--CCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChH
Q 044559 496 VEI----HDGPY--NVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSK 565 (585)
Q Consensus 496 ~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
+.. +++.+ .++ .++||.++|++||+ ++++|++.+||+++|+++++ .++|.||||.+|+++.+.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIeV~id~~~~~~ 531 (548)
T PRK08978 462 RQWQQLFFDERYSETDLSDNPDFVMLASAFGI-----PGQTITRKDQVEAALDTLLN--SEGPYLLHVSIDELENVW 531 (548)
T ss_pred HHHHHHHhCCcceecCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEecCccccc
Confidence 322 23333 233 56999999999999 99999999999999999986 889999999999877643
No 19
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=2.2e-88 Score=752.20 Aligned_cols=507 Identities=22% Similarity=0.281 Sum_probs=409.1
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChh
Q 044559 39 VNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVG 117 (585)
Q Consensus 39 ~~~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG 117 (585)
+.+..||++++|++.|+++||+||||+||+++.+|+++|.++++|++|.||||++|+|||+||+|+||+ +||++|+|||
T Consensus 26 ~~~~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG 105 (612)
T PRK07789 26 VAPERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPG 105 (612)
T ss_pred cccccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCcc
Confidence 445557999999999999999999999999999999999765689999999999999999999999999 9999999999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhh
Q 044559 118 GLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTAL 197 (585)
Q Consensus 118 ~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~ 197 (585)
++|+++||++||.+++|||+|+|+.+....+.+ .+ |..||..+|+++|||++++++++++++++++|++.|+
T Consensus 106 ~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~ 177 (612)
T PRK07789 106 ATNLVTPIADANMDSVPVVAITGQVGRGLIGTD-----AF---QEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIAS 177 (612)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----cC---cccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988765543 22 3458999999999999999999999999999999999
Q ss_pred hc-CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHH
Q 044559 198 KE-SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELA 276 (585)
Q Consensus 198 ~~-~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~la 276 (585)
++ +|||||+||.|++..+.+........ .....+...++.+.+++++++|.+||||+|++|.|+.++++.++|++|+
T Consensus 178 ~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~--~~~~~~~~~p~~~~i~~~~~~L~~AkrPlIl~G~g~~~~~a~~~l~~la 255 (612)
T PRK07789 178 TGRPGPVLVDIPKDALQAQTTFSWPPRMD--LPGYRPVTKPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELA 255 (612)
T ss_pred cCCCceEEEEEccchhhcccccccCcccc--ccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 87 69999999999976432110010000 1100010123456799999999999999999999999889999999999
Q ss_pred HHhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcce
Q 044559 277 DACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVV 335 (585)
Q Consensus 277 e~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~ 335 (585)
|++|+||+||+++||+||++||+++|.+ |..+... .+..+..+.++.++||||.|+..
T Consensus 256 e~l~~PV~tt~~~kg~~p~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~ 334 (612)
T PRK07789 256 ELTGIPVVTTLMARGAFPDSHPQHLGMP-GMHGTVAAVAALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAE 334 (612)
T ss_pred HHHCCCEEEcccccccCCCCChhhccCC-cccCcHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHH
Confidence 9999999999999999999999999976 3332210 11122334566789999999998
Q ss_pred eccCCcccc----ccHHHHHHHHHHHhccCc-----chhhhhc----cccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCC
Q 044559 336 IANGPAFGC----VLMKDFLKALSKRLKSNT-----TAYENYH----RIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSS 402 (585)
Q Consensus 336 i~~~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~ 402 (585)
++ ..+..+ .|++.+|++|.+.++... ..+..|. +.+...........+.++++..+++.|++.+++
T Consensus 335 i~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~ 413 (612)
T PRK07789 335 IG-KNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDEPSDGSLAPQYVIERLGEIAGP 413 (612)
T ss_pred hC-CCCCCCeEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCccccccccCCCcCHHHHHHHHHhhCCC
Confidence 87 333222 488999999998775321 0111221 111100000111123469999999999999999
Q ss_pred CCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCc
Q 044559 403 ETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQK 481 (585)
Q Consensus 403 ~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lp 481 (585)
+++++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++++|+|+|++++|||||+|++|||+|++||++|
T Consensus 414 ~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~lp 493 (612)
T PRK07789 414 DAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGIP 493 (612)
T ss_pred CeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhccHHHHHHHHHcCCC
Confidence 999999999987664 4466666667999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCcceeeeee----cCCCcC--CC-----CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCC
Q 044559 482 TIIFLINNGGYTIEVEI----HDGPYN--VI-----KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDC 550 (585)
Q Consensus 482 v~ivV~NN~~~~~~~~~----~~~~~~--~~-----~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~g 550 (585)
+++||+||++|++.+.. +++.+. ++ +.+||.++|++||+ ++++|++.+||+++|+++++ ..++
T Consensus 494 v~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~eL~~al~~a~~-~~~~ 567 (612)
T PRK07789 494 IKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGC-----VGLRCEREEDVDAVIEKARA-INDR 567 (612)
T ss_pred eEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh-cCCC
Confidence 99999999999984321 222222 22 24899999999999 99999999999999999985 2379
Q ss_pred eEEEEEEcCCCCC
Q 044559 551 LCFIEVLVHKDDT 563 (585)
Q Consensus 551 p~vIeV~v~~~~~ 563 (585)
|+||||.+++++.
T Consensus 568 p~lIev~i~~~~~ 580 (612)
T PRK07789 568 PVVIDFVVGKDAM 580 (612)
T ss_pred cEEEEEEECCccc
Confidence 9999999997654
No 20
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=7e-88 Score=678.63 Aligned_cols=539 Identities=63% Similarity=1.007 Sum_probs=488.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHH
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 121 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~ 121 (585)
+.++.+++|+++|.+.||++|||+||+.++.|+|.|...+++||+.+.||.+||||||||||..|.++|++|.|+|.+.+
T Consensus 2 ~~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLSA 81 (561)
T KOG1184|consen 2 SPITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKGIGACVTTFGVGELSA 81 (561)
T ss_pred CceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcCceEEEEEeccchhhh
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCC
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK 201 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~G 201 (585)
++|+++||++++|||+|+|-+++..+++++++||++|.+++..+.+|++.+++++..+++.+++++.|++|+++|.....
T Consensus 82 lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~r 161 (561)
T KOG1184|consen 82 LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKESK 161 (561)
T ss_pred hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCC
Q 044559 202 PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281 (585)
Q Consensus 202 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~ 281 (585)
||||.||.|+...+.+.....+.+....+...+.....+.++.+++++.++++|+|++|.-.++.++.++..+|+++++.
T Consensus 162 PVYi~iP~n~~~~~~~~~~l~~~p~~~~~~~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~~~~~~ 241 (561)
T KOG1184|consen 162 PVYIGVPANLADLPVPAFGLLPVPLDLSPKPSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELADATGF 241 (561)
T ss_pred CeEEEeecccccCcCCcccCCCCCcccCCCCCcHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHHHhhCC
Confidence 99999999998765554433355555555556666677889999999999999999999999999999999999999999
Q ss_pred ceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccCC
Q 044559 282 AVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANGP 340 (585)
Q Consensus 282 Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~~ 340 (585)
|++.|++|||.++|+||.|.|.|.|..+... ++.+|+...++.++++++.|...+. ..
T Consensus 242 p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~~~k~~~~i~~~~d~v~i~-~~ 320 (561)
T KOG1184|consen 242 PVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSYLYKKKNAIEFHSDRVKIR-NA 320 (561)
T ss_pred CeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEeecCccceEEEecceEEec-cc
Confidence 9999999999999999999999988876543 4566666667778999999999886 67
Q ss_pred ccccccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccc
Q 044559 341 AFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKL 420 (585)
Q Consensus 341 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~ 420 (585)
.|..++++.+|+.|+++++.....++++.+....+.......+..+++...++..++..+.+.+++++|+|.|+|....+
T Consensus 321 ~f~~v~mk~~l~~Lak~I~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~d~v~~ETG~S~F~~~~~ 400 (561)
T KOG1184|consen 321 TFGGVLMKDFLQELAKRIKKNKTSYENYVRIPVPEPKPLACPPNAPLRQEWMWNHIQKFLSSGDVVIAETGDSWFGINQT 400 (561)
T ss_pred cccceeHHHHHHHHHHhhcccccchhcccccCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCceEEEecccceecceee
Confidence 88889999999999999887665444343332222222334455678999999999999999999999999999998889
Q ss_pred cccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecC
Q 044559 421 KLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD 500 (585)
Q Consensus 421 ~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~ 500 (585)
.+|.+..+.+...||++||++|+++|++.|.++|+|++++|||||++++||+.|++|.++|..|+|+||+||.+++.+|+
T Consensus 401 ~fP~g~~~~~q~~wgsIG~svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStmir~gl~~~if~~NN~GYTIE~~IH~ 480 (561)
T KOG1184|consen 401 KFPKGCGYESQMQWGSIGWSVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTMIRWGLKPIIFLINNGGYTIEVEIHD 480 (561)
T ss_pred ccccccceEEEEEEeeccccchhhhhhhhccCCceEEEEecCccceeeHHHHHHHHhcCCCcEEEEEeCCceEEEEeecC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHHHHhhhhcCC
Q 044559 501 GPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSR 580 (585)
Q Consensus 501 ~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~~~~~ 580 (585)
+.|+++.+|||.++.++||..++.++..++.+-+|+.++++++...+.+++.+|||+++..|.++.|.+|++..+..|++
T Consensus 481 ~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~~~~~i~liEv~l~~~D~p~~L~~~~~~~a~~n~k 560 (561)
T KOG1184|consen 481 GPYNDIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFEKNDKIRLIEVILPVDDAPKELLEWGSLVAAANSK 560 (561)
T ss_pred CCccccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhcccCceEEEEEecCcccChHHHHHHHHHhhhcccC
Confidence 88999999999999999999888789999999999999999888546778999999999999999999999999998876
Q ss_pred C
Q 044559 581 P 581 (585)
Q Consensus 581 ~ 581 (585)
|
T Consensus 561 ~ 561 (561)
T KOG1184|consen 561 P 561 (561)
T ss_pred C
Confidence 4
No 21
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2.9e-88 Score=748.09 Aligned_cols=505 Identities=21% Similarity=0.262 Sum_probs=405.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhh
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIA---EPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGG 118 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~ 118 (585)
+++++++|++.|+++||+||||+||+++++|+++|.+ +++|++|.+|||++|+|||+||+|+||+ +||++|+|||+
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~ 80 (572)
T PRK06456 1 MPTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGT 80 (572)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCH
Confidence 4689999999999999999999999999999999964 2469999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhh
Q 044559 119 LSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK 198 (585)
Q Consensus 119 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~ 198 (585)
+|+++||++|+.+++|||+|+|+.+....+++. + |..||.++|+++|||+.++++++++++.+++|++.|++
T Consensus 81 ~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~---q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~ 152 (572)
T PRK06456 81 TNLVTGLITAYWDSSPVIAITGQVPRSVMGKMA-----F---QEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATT 152 (572)
T ss_pred HHHHHHHHHHHhhCCCEEEEecCCCccccCCCC-----c---cccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988665542 2 34588999999999999999999999999999999999
Q ss_pred c-CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHH
Q 044559 199 E-SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELAD 277 (585)
Q Consensus 199 ~-~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae 277 (585)
+ +|||||+||.|++..+.+.......+...........++++.+++++++|.+||||+|++|.|++++++.++|++|+|
T Consensus 153 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae 232 (572)
T PRK06456 153 GRPGPVVIDIPRDIFYEKMEEIKWPEKPLVKGYRDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAE 232 (572)
T ss_pred CCCCcEEEecChhHhhcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHHHH
Confidence 7 699999999999764321100000000000000011234567999999999999999999999998899999999999
Q ss_pred HhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCC-CccEEEEcCCcce
Q 044559 278 ACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLK-KEKAVILQPDRVV 335 (585)
Q Consensus 278 ~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~-~~~~i~vd~d~~~ 335 (585)
++|+||+||++|||+||++||+++|.+ |..+... .+..|..+.+ ..++||||+|+..
T Consensus 233 ~~~~pv~tt~~gkg~i~~~hp~~~G~~-g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 311 (572)
T PRK06456 233 LLHIPIVSTFPGKTAIPHDHPLYFGPM-GYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTD 311 (572)
T ss_pred HhCCCEEEcCccCcCCCCCCccccccC-CCCCCHHHHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHH
Confidence 999999999999999999999999976 3222211 1122333333 5689999999998
Q ss_pred eccCCccc----cccHHHHHHHHHHHhccC---c--chhh-hhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 044559 336 IANGPAFG----CVLMKDFLKALSKRLKSN---T--TAYE-NYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETA 405 (585)
Q Consensus 336 i~~~~~~~----~~~~~~~l~~L~~~l~~~---~--~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~i 405 (585)
++ ..+.. ..|++.+|++|.+.+... . ..|. .+...+.............++++.++++.|++.++++++
T Consensus 312 ~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~i 390 (572)
T PRK06456 312 GE-KAIKVDVGIYGNAKIILRELIKAITELGQKRDRSAWLKRVKEYKEYYSQFYYTEENGKLKPWKIMKTIRQALPRDAI 390 (572)
T ss_pred hC-CccCCCeEEecCHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHhchhhcccccCCCcCHHHHHHHHHHhCCCCEE
Confidence 86 32222 247899999998876531 1 1121 111111000000001123369999999999999999999
Q ss_pred EEecCCccccccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEE
Q 044559 406 VIAETGDSWFNCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTII 484 (585)
Q Consensus 406 iv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~i 484 (585)
++.|+|++.+|.. ++..+++.+++.+.++|+|||++|+|||+++|.|+++||+++|||||+|++|||+|++||++|+++
T Consensus 391 i~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i~i 470 (572)
T PRK06456 391 VTTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPVIS 470 (572)
T ss_pred EEECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHHhCCCeEE
Confidence 9999999877653 345555566999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcceeeeee----cCCCc--CCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEE
Q 044559 485 FLINNGGYTIEVEI----HDGPY--NVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVL 557 (585)
Q Consensus 485 vV~NN~~~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~ 557 (585)
||+||++|++.++. +.+.+ .++ +++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.
T Consensus 471 vV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIev~ 543 (572)
T PRK06456 471 VIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGA-----LGFNVTTYEDIEKSLKSAIK--EDIPAVIRVP 543 (572)
T ss_pred EEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCC-----eeEEeCCHHHHHHHHHHHHh--CCCCEEEEEE
Confidence 99999999984332 22222 234 46999999999999 99999999999999999986 7899999999
Q ss_pred cCCCCCh
Q 044559 558 VHKDDTS 564 (585)
Q Consensus 558 v~~~~~~ 564 (585)
+++++.+
T Consensus 544 v~~~~~~ 550 (572)
T PRK06456 544 VDKEELA 550 (572)
T ss_pred eCccccc
Confidence 9987644
No 22
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.3e-88 Score=745.08 Aligned_cols=503 Identities=20% Similarity=0.263 Sum_probs=409.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
.++++++|++.|+++||+||||+||+++++|+++|.+.++|++|.+|||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 47899999999999999999999999999999999765689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++||.+++|||+|+|+.+....+++ .+ |..||..+++++|||+.++++++++++.|++|++.|+++ +
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~ 153 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTD-----AF---QEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRP 153 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCC-----CC---cccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988755443 22 346889999999999999999999999999999999996 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++..+.+.......+.. ...+...++++.+++++++|.+||||+|++|.|+.++++.++|++|+|+++
T Consensus 154 GPV~l~iP~Dv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~ 231 (563)
T PRK08527 154 GPVHIDIPKDVTATLGEFEYPKEISLK--TYKPTYKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTG 231 (563)
T ss_pred CcEEEEcCHhHhhhhhccccccccccc--cCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHC
Confidence 999999999997642111011111100 000111124567999999999999999999999999899999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccC
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANG 339 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~ 339 (585)
+||+||++|||+||++||+++|.+ |..+... .+.+|..+.++.++||||.|+..++ .
T Consensus 232 ~pV~tt~~~kg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~-~ 309 (563)
T PRK08527 232 IPAVETLMARGVLRSDDPLLLGML-GMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSIS-K 309 (563)
T ss_pred CCEEEccccCCCCCCCChhhcCCC-cccCCHHHHHHHHhCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999986 3333211 1222334556678999999999886 3
Q ss_pred Cccc----cccHHHHHHHHHHHhccCc----chhh-hhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecC
Q 044559 340 PAFG----CVLMKDFLKALSKRLKSNT----TAYE-NYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAET 410 (585)
Q Consensus 340 ~~~~----~~~~~~~l~~L~~~l~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~ 410 (585)
.... ..|++.+|++|.+.++... ..|. .+.+.+...... ......++++.++++.|++.++++++++.|+
T Consensus 310 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~ 388 (563)
T PRK08527 310 IVNADYPIVGDLKNVLKEMLEELKEENPTTYKEWREILKRYNELHPLS-YEDSDEVLKPQWVIERVGELLGDDAIISTDV 388 (563)
T ss_pred CCCCCeEEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhCccc-ccCCCCCcCHHHHHHHHHhhCCCCeEEEECC
Confidence 2211 2489999999998775421 1121 111111000000 0111346999999999999999999999999
Q ss_pred Ccccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeC
Q 044559 411 GDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489 (585)
Q Consensus 411 G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN 489 (585)
|++..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+++||+++|||||+|++|||+|++||++|+++||+||
T Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN 468 (563)
T PRK08527 389 GQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINIILNN 468 (563)
T ss_pred cHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHHhCCCeEEEEEEC
Confidence 9987664 456666667799999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccceeeeee----cCCCc--CCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCC
Q 044559 490 GGYTIEVEI----HDGPY--NVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDD 562 (585)
Q Consensus 490 ~~~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
++|++.+.. ++..+ .++ .++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++.+
T Consensus 469 ~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lieV~v~~~~ 541 (563)
T PRK08527 469 NFLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGG-----IGFRVTTKEEFDKALKEALE--SDKVALIDVKIDRFE 541 (563)
T ss_pred CcchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEECCcc
Confidence 999984322 22232 234 36899999999999 99999999999999999986 789999999999877
Q ss_pred ChH
Q 044559 563 TSK 565 (585)
Q Consensus 563 ~~~ 565 (585)
.+.
T Consensus 542 ~~~ 544 (563)
T PRK08527 542 NVL 544 (563)
T ss_pred ccc
Confidence 543
No 23
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=2.3e-88 Score=745.83 Aligned_cols=505 Identities=19% Similarity=0.238 Sum_probs=408.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
..++++++|++.|+++||+||||+||+++.+|+++|.+ ++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N 81 (552)
T PRK08617 3 KKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALED-SGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSN 81 (552)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhh-CCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhH
Confidence 45899999999999999999999999999999999975 589999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++||++|+.+++|||+|+|+.+....+++ . .|..||.++|+++|||++++++++++++.+++|++.|+++
T Consensus 82 ~l~gl~~A~~~~~PvlvisG~~~~~~~~~~-----~---~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~ 153 (552)
T PRK08617 82 LATGLVTATAEGDPVVAIGGQVKRADRLKR-----T---HQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGR 153 (552)
T ss_pred hHHHHHHHhhcCCCEEEEecCCcccccCCC-----C---ccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999888765543 1 2356899999999999999999999999999999999987
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+.+ ....... ..+ ....++++.+++++++|.+||||+|++|.|+.++++.+++++|||++
T Consensus 154 ~GPV~l~iP~dv~~~~~~--~~~~~~~-~~~--~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~ 228 (552)
T PRK08617 154 PGAAFVSLPQDVVDAPVT--SKAIAPL-SKP--KLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERT 228 (552)
T ss_pred CCcEEEeChhhhhhcccc--ccccccc-cCC--CCCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHh
Confidence 699999999999874322 1100000 011 11122455789999999999999999999999888999999999999
Q ss_pred CCceEeCCCCccccCCCCC-CccccccCCCCCCc-----------cccc-----cc--cc--CCCccEEEEcCCcceecc
Q 044559 280 GYAVAVMPSAKGLVPEHHP-HFIGTYWGAVSTAF-----------FSVG-----YS--LL--LKKEKAVILQPDRVVIAN 338 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp-~~~g~~~g~~~~~~-----------~~~~-----~~--~~--~~~~~~i~vd~d~~~i~~ 338 (585)
|+||+||++|||+||++|| +++|.+ |..+... ..+| |. .+ .++.++||||.|+..++
T Consensus 229 ~~pV~tt~~gkg~~~~~hp~~~~G~~-g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 306 (552)
T PRK08617 229 NLPVVETFQAAGVISRELEDHFFGRV-GLFRNQPGDELLKKADLVITIGYDPIEYEPRNWNSEGDATIIHIDVLPAEID- 306 (552)
T ss_pred CCCEEeccccCccCCCCCchhhccCC-cCCCcHHHHHHHHhCCEEEEecCccccccccccccCCCCcEEEEeCChHHhC-
Confidence 9999999999999999998 688875 3322111 1111 11 11 23468999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc------chhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 044559 339 GPAFGC----VLMKDFLKALSKRLKSNT------TAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIA 408 (585)
Q Consensus 339 ~~~~~~----~~~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~ 408 (585)
..+..+ .|++.+|++|.+.++... .+.+.|++...............++++..+++.|++.++++.+++.
T Consensus 307 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~ 386 (552)
T PRK08617 307 NYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLEILEELRAQLEELAERPARLEEGAVHPLRIIRALQDIVTDDTTVTV 386 (552)
T ss_pred CccCCCeEEeCCHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHhhhhhcccCCCCcCHHHHHHHHHHhcCCCcEEEe
Confidence 333322 488999999988765321 1112222211100000011223468999999999999999999999
Q ss_pred cCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEE
Q 044559 409 ETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLI 487 (585)
Q Consensus 409 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~ 487 (585)
|+|++..|. .++...++.+++.+.++|+|||++|+|||+++++|+++|++++|||||+|++|||+|++||++|+++||+
T Consensus 387 d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV~ 466 (552)
T PRK08617 387 DVGSHYIWMARYFRSYEPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLNIVHIIW 466 (552)
T ss_pred CCcHHHHHHHHhccccCCCeEEecCccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHHhCCCeEEEEE
Confidence 999987664 3444455566888889999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcceeeeee----cCC-CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCC
Q 044559 488 NNGGYTIEVEI----HDG-PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDD 562 (585)
Q Consensus 488 NN~~~~~~~~~----~~~-~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
||++|++.+.. +.. ...++.++||.++|++||+ ++++|++++||+++|+++++ .++|+||||.+++++
T Consensus 467 NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~liev~~~~~~ 539 (552)
T PRK08617 467 NDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESFGA-----KGLRVTSPDELEPVLREALA--TDGPVVIDIPVDYSD 539 (552)
T ss_pred ECCccchHHHHHHhhcCCcccCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCcEEEEEEecccc
Confidence 99999984321 111 1234567999999999999 99999999999999999986 889999999999988
Q ss_pred ChHHHHH
Q 044559 563 TSKELLE 569 (585)
Q Consensus 563 ~~~~~~~ 569 (585)
.++.+..
T Consensus 540 ~~~~~~~ 546 (552)
T PRK08617 540 NIKLMEQ 546 (552)
T ss_pred cchhhhh
Confidence 8766543
No 24
>PLN02470 acetolactate synthase
Probab=100.00 E-value=4.1e-88 Score=746.96 Aligned_cols=503 Identities=17% Similarity=0.232 Sum_probs=403.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
.+++++++|++.|+++||+||||+||+++++|+++|.+.++|++|.+|||++|+|||+||+|+||+ |||++|+|||++|
T Consensus 11 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N 90 (585)
T PLN02470 11 EPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATN 90 (585)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 348999999999999999999999999999999999755579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++||++||.+++|||+|+|+.++...+++ .+ |..||..+++++|||++++.+++++++.|++|++.|.++
T Consensus 91 ~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~ 162 (585)
T PLN02470 91 LVTGLADALLDSVPLVAITGQVPRRMIGTD-----AF---QETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGR 162 (585)
T ss_pred HHHHHHHHHhcCCcEEEEecCCChhhcCCC-----cC---cccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998765543 22 345889999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+.......+.+...........++++.+++++++|.+||||+|++|.|+. ++.++|++|+|++
T Consensus 163 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~--~a~~~l~~lae~~ 240 (585)
T PLN02470 163 PGPVLVDIPKDIQQQLAVPNWNQPMKLPGYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCL--NSSEELREFVELT 240 (585)
T ss_pred CCeEEEEecCchhhhhccccccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCChh--hhHHHHHHHHHHh
Confidence 69999999999976421110000111000000001123456799999999999999999999986 4789999999999
Q ss_pred CCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceecc
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIAN 338 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~ 338 (585)
++||+||++|||+||++||+++|.+ |..+... .+..|..+.+..++||||+|+..++
T Consensus 241 ~~pv~tt~~gkg~~~~~hpl~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~- 318 (585)
T PLN02470 241 GIPVASTLMGLGAFPASDELSLQML-GMHGTVYANYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIG- 318 (585)
T ss_pred CCCEEEccCccccCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999976 4332211 1112233455678999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc------chh-hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 044559 339 GPAFGC----VLMKDFLKALSKRLKSNT------TAY-ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVI 407 (585)
Q Consensus 339 ~~~~~~----~~~~~~l~~L~~~l~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv 407 (585)
+....+ .|++.+|++|.+.+.... ..| +.+.+.+...... ......++++..+++.|++.++++++++
T Consensus 319 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~d~iv~ 397 (585)
T PLN02470 319 KNKQPHVSVCADVKLALQGLNKLLEERKAKRPDFSAWRAELDEQKEKFPLS-YPTFGDAIPPQYAIQVLDELTDGNAIIS 397 (585)
T ss_pred CCcCCCeEEecCHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHhChhc-ccCCCCCcCHHHHHHHHHhhCCCCEEEE
Confidence 333222 478999999988775421 111 1111111000000 0111246999999999999999999999
Q ss_pred ecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEE
Q 044559 408 AETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFL 486 (585)
Q Consensus 408 ~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV 486 (585)
.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++|+++||
T Consensus 398 ~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~v~ivV 477 (585)
T PLN02470 398 TGVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIMV 477 (585)
T ss_pred ECCcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEE
Confidence 9999987664 456666667799999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcceeeeee----cCCCc--CCC--------CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeE
Q 044559 487 INNGGYTIEVEI----HDGPY--NVI--------KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLC 552 (585)
Q Consensus 487 ~NN~~~~~~~~~----~~~~~--~~~--------~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~ 552 (585)
+||++|++.++. +...+ ..+ ..+||.++|++||+ ++.+|++++||+++|+++++ .++|+
T Consensus 478 ~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~ 550 (585)
T PLN02470 478 LNNQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKI-----PAARVTRKSDLREAIQKMLD--TPGPY 550 (585)
T ss_pred EeCCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCE
Confidence 999999984321 11111 111 12899999999999 99999999999999999996 78999
Q ss_pred EEEEEcCCCCCh
Q 044559 553 FIEVLVHKDDTS 564 (585)
Q Consensus 553 vIeV~v~~~~~~ 564 (585)
||||.+++++.+
T Consensus 551 lieV~i~~~~~~ 562 (585)
T PLN02470 551 LLDVIVPHQEHV 562 (585)
T ss_pred EEEEEeCCccCc
Confidence 999999987644
No 25
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=5.3e-88 Score=745.85 Aligned_cols=502 Identities=19% Similarity=0.275 Sum_probs=407.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
+||++++|++.|+++||++|||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 79 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPP-AGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNC 79 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHH
Confidence 4899999999999999999999999999999999975 579999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCC
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK 201 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~G 201 (585)
++||++||.+++|||+|+|+.+....+.+ .+ |..||..+|+++|||++++++++++++.|++|++.|.+++|
T Consensus 80 ~~gla~A~~~~~Pvl~I~g~~~~~~~~~~-----~~---Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~G 151 (579)
T TIGR03457 80 VTAIAAAYWAHTPVVIVTPEAGTKTIGLG-----GF---QEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREMG 151 (579)
T ss_pred HHHHHHHhhcCCCEEEEeCCCccccCCCC-----CC---cccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988755543 12 34588999999999999999999999999999999999899
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCC
Q 044559 202 PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281 (585)
Q Consensus 202 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~ 281 (585)
||||+||.|++..+.+. ..+.+. ... ...+++..+++++++|.+||||+|++|.|+.++++.++|++|||++|+
T Consensus 152 PV~l~iP~Dv~~~~~~~--~~~~~~--~~~--~~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~ 225 (579)
T TIGR03457 152 PAQLNIPRDYFYGEIDV--EIPRPV--RLD--RGAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGA 225 (579)
T ss_pred CEEEEeCcchhhhhccc--ccCccc--ccC--CCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCC
Confidence 99999999998643211 111110 111 112355679999999999999999999999999999999999999999
Q ss_pred ceEeCCCCccccCCCCCCccccccCCCCCCc---------------c------ccc-cc--ccCCCccEEEEcCCcceec
Q 044559 282 AVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------F------SVG-YS--LLLKKEKAVILQPDRVVIA 337 (585)
Q Consensus 282 Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~------~~~-~~--~~~~~~~~i~vd~d~~~i~ 337 (585)
||+||++|||+||++||+++|.+ |..+... . +.. |. .+.++.++||||.|+..++
T Consensus 226 PV~tt~~gkg~~p~~hp~~~G~~-g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~ 304 (579)
T TIGR03457 226 PVVNSYLHNDSFPASHPLWVGPL-GYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIG 304 (579)
T ss_pred CEEEcccccccCCCCCchhccCC-cCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhC
Confidence 99999999999999999999976 2222110 1 110 11 2344678999999999887
Q ss_pred cCCcccc----ccHHHHHHHHHHHhccCc-------------chhhhhcc----ccC-CCCC------CCCCCCCCCcCH
Q 044559 338 NGPAFGC----VLMKDFLKALSKRLKSNT-------------TAYENYHR----IYV-PEGQ------PPKCEPKEPLRV 389 (585)
Q Consensus 338 ~~~~~~~----~~~~~~l~~L~~~l~~~~-------------~~~~~~~~----~~~-~~~~------~~~~~~~~~i~~ 389 (585)
..+..+ .|++.+|++|.+.+.... .....|.+ .+. .... ......+.++++
T Consensus 305 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (579)
T TIGR03457 305 -LVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHP 383 (579)
T ss_pred -CCCCCCeeEecCHHHHHHHHHHhhhhcccccchhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCH
Confidence 333222 478999999988774320 00111211 000 0000 000122346999
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhccc
Q 044559 390 NVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT 468 (585)
Q Consensus 390 ~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~ 468 (585)
.++++.|++.++++++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++++|+++||+++|||||+|+
T Consensus 384 ~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~ 463 (579)
T TIGR03457 384 RQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMS 463 (579)
T ss_pred HHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhcc
Confidence 9999999999999999999999987665 456666777799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEEEeCCcceeeeee----cCCCc--CCCCC-CChHHHHHHhcCCCCCceeEEEcCHHHHHHHHH
Q 044559 469 AQDVSTMLRCGQKTIIFLINNGGYTIEVEI----HDGPY--NVIKN-WNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIE 541 (585)
Q Consensus 469 ~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~~~--~~~~~-~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~ 541 (585)
+|||+|++||++|+++||+||++|++.+.. +++.+ .++.. +||.++|++||+ ++++|++++||.++|+
T Consensus 464 ~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~g~~v~~~~el~~al~ 538 (579)
T TIGR03457 464 MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGA-----KGVVVDKPEDVGPALK 538 (579)
T ss_pred HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHH
Confidence 999999999999999999999999984321 22322 23443 799999999999 9999999999999999
Q ss_pred hhcC-CCCCCeEEEEEEcCCCCChHH
Q 044559 542 NATG-PKKDCLCFIEVLVHKDDTSKE 566 (585)
Q Consensus 542 ~a~~-~~~~gp~vIeV~v~~~~~~~~ 566 (585)
++++ .+.++|+||||.+++++.++.
T Consensus 539 ~a~~~~~~~~p~lieV~v~~~~~~~~ 564 (579)
T TIGR03457 539 KAIAAQAEGKTTVIEIVCTRELGDPF 564 (579)
T ss_pred HHHhhCCCCCcEEEEEEeCCCcCCch
Confidence 9985 235799999999999886554
No 26
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=5.5e-88 Score=743.96 Aligned_cols=500 Identities=22% Similarity=0.317 Sum_probs=406.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-PGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
.++++++|++.|+++||+||||+||+++.+|+++|.+. ++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 82 (576)
T PRK08611 3 KIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIH 82 (576)
T ss_pred CCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHH
Confidence 37999999999999999999999999999999999653 579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcC
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKES 200 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 200 (585)
+++||++||.+++|||+|||+.+....+++. + |..||.++|+++|||++++.+++++++.+++|++.|.+++
T Consensus 83 ~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~-----~---q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~ 154 (576)
T PRK08611 83 LLNGLYDAKMDHVPVLALAGQVTSDLLGTDF-----F---QEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK 154 (576)
T ss_pred HHHHHHHHhhcCCCEEEEecCCcccccCCCC-----c---cccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999988665542 2 3458899999999999999999999999999999999989
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++..+.+.......+. ..+ ....++++.+++++++|.+||||+|++|.|++ ++.++|++|||++|
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~~~ 229 (576)
T PRK08611 155 GVAVLTIPDDLPAQKIKDTTNKTVDT-FRP--TVPSPKPKDIKKAAKLINKAKKPVILAGLGAK--HAKEELLAFAEKAK 229 (576)
T ss_pred CCEEEEeChhhhhccccccccccccc-CCC--CCCCCCHHHHHHHHHHHHcCCCcEEEECcCcc--hHHHHHHHHHHHhC
Confidence 99999999999764321100000110 001 11123556799999999999999999999996 47899999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCCc---------------cccccccc-CCCccEEEEcCCcceeccCCcccc
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------FSVGYSLL-LKKEKAVILQPDRVVIANGPAFGC 344 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~~~~~~~~-~~~~~~i~vd~d~~~i~~~~~~~~ 344 (585)
+||+||++|||+||++||+++|.+ |..+... ..+.|..+ .++.++||||.|+.+++ ..+..+
T Consensus 230 ~PV~tt~~gkg~~~~~hp~~~G~~-g~~~~~~a~~~l~~aDlvl~iG~~~~~~~~~~~~~~~i~id~d~~~i~-~~~~~~ 307 (576)
T PRK08611 230 IPIIHTLPAKGIIPDDHPYSLGNL-GKIGTKPAYEAMQEADLLIMVGTNYPYVDYLPKKAKAIQIDTDPANIG-KRYPVN 307 (576)
T ss_pred CCEEEccccccccCCCCccccccC-CCCCcHHHHHHHHhCCEEEEeCCCCCccccCCCCCcEEEEeCCHHHcC-CccCCC
Confidence 999999999999999999999976 4333211 22223223 33568999999999887 333222
Q ss_pred ----ccHHHHHHHHHHHhccCcc-hh-hhh---ccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccc
Q 044559 345 ----VLMKDFLKALSKRLKSNTT-AY-ENY---HRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWF 415 (585)
Q Consensus 345 ----~~~~~~l~~L~~~l~~~~~-~~-~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~ 415 (585)
.|++.||++|.+.+..... .| +.+ ++.............+.++++.++++.|++.+|++++++.|+|++..
T Consensus 308 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~ivv~d~G~~~~ 387 (576)
T PRK08611 308 VGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIADDDAVLSVDVGTVTV 387 (576)
T ss_pred eeEecCHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhcCCCeEEEEcChHHHH
Confidence 4889999999987754321 11 111 11000000000112234699999999999999999999999999977
Q ss_pred cc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCccee
Q 044559 416 NC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI 494 (585)
Q Consensus 416 ~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~ 494 (585)
|. .++..+++.+|+.+.++|+|||++|+|||++++.|+++||+++|||||+|++|||+|++||++|+++||+||++|++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~iivV~NN~~~g~ 467 (576)
T PRK08611 388 WSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNNQQLAF 467 (576)
T ss_pred HHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHHhCCCeEEEEEeCCcchH
Confidence 64 44566666678888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeeec----CCC-cCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCCh
Q 044559 495 EVEIH----DGP-YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 495 ~~~~~----~~~-~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
.+..+ ... ..++.++||.++|++||+ ++++|++++||+++|+++++ .++|+||||.+++++.+
T Consensus 468 i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIeV~vd~~~~~ 535 (576)
T PRK08611 468 IKYEQQAAGELEYAIDLSDMDYAKFAEACGG-----KGYRVEKAEELDPAFEEALA--QDKPVIIDVYVDPNAAP 535 (576)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCcccC
Confidence 43211 112 244568999999999999 99999999999999999986 79999999999987643
No 27
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=4.4e-88 Score=747.75 Aligned_cols=500 Identities=21% Similarity=0.264 Sum_probs=404.3
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-PGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
++++++|++.|+++||+||||+||+++++|+++|.+. ++|++|.+|||++|+||||||||+||+ |||++|+|||++|+
T Consensus 3 ~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 82 (597)
T PRK08273 3 QTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHL 82 (597)
T ss_pred ccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 7899999999999999999999999999999999653 469999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhccee-EEEEEeCChhhHHHHHHHHHHHhhhcC
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVT-CYQAVVNNLEDAHELIDTAVSTALKES 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~t-k~~~~v~~~~~~~~~l~~A~~~a~~~~ 200 (585)
++||++||.+++|||+|+|+.++...+++. + |..||.++|+++| ||+.++.+++++++.+++|++.|++++
T Consensus 83 ~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~-----~---q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~ 154 (597)
T PRK08273 83 LNGLYDAKLDHVPVVAIVGQQARAALGGHY-----Q---QEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER 154 (597)
T ss_pred HHHHHHHHhcCCCEEEEecCCchhhcCCCC-----C---CccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999988665542 2 2457889999999 999999999999999999999999988
Q ss_pred CcEEEEecCCCCCCCCCCCCCC--CCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHH
Q 044559 201 KPVYISVACNLPAIPHPTFSRE--PVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADA 278 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 278 (585)
|||||+||.|++..+.+..... ..............++++.+++++++|.+||||+|++|.|+. ++.++|.+|||+
T Consensus 155 gPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~--~a~~~l~~lae~ 232 (597)
T PRK08273 155 TVTAVILPNDVQELEYEPPPHAHGTVHSGVGYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGAL--GATDEVIAVAER 232 (597)
T ss_pred CCEEEEeCcchhhCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEECcchH--hHHHHHHHHHHH
Confidence 9999999999986421110000 000000000011123567899999999999999999999996 689999999999
Q ss_pred hCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------ccccccccC---CCccEEEEcCCcceeccCC
Q 044559 279 CGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------FSVGYSLLL---KKEKAVILQPDRVVIANGP 340 (585)
Q Consensus 279 ~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~~~~~~~~~---~~~~~i~vd~d~~~i~~~~ 340 (585)
+++||+||++|||+||++||+++|.+ |..+... ..+.|..+. ++.++||||.|+..++ ..
T Consensus 233 ~~~PV~tt~~gkg~~~e~hp~~~G~~-G~~g~~~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~i~Id~d~~~~~-~~ 310 (597)
T PRK08273 233 LGAGVAKALLGKAALPDDLPWVTGSI-GLLGTKPSYELMRECDTLLMVGSSFPYSEFLPKEGQARGVQIDIDGRMLG-LR 310 (597)
T ss_pred hCCceeecccCcccCCCCCccceecC-CCCccHHHHHHHHhCCEEEEeCCCCCHHhcCCCCCCCeEEEEeCCHHHcC-CC
Confidence 99999999999999999999999986 4444221 122222222 2468999999999886 32
Q ss_pred ccc----cccHHHHHHHHHHHhccCc-chh-hhh---ccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 044559 341 AFG----CVLMKDFLKALSKRLKSNT-TAY-ENY---HRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETG 411 (585)
Q Consensus 341 ~~~----~~~~~~~l~~L~~~l~~~~-~~~-~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G 411 (585)
+.. ..|++.+|++|.+.+.... ..| +.+ ++.+.............++++.++++.|++.++++++++.|+|
T Consensus 311 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~~ivv~d~G 390 (597)
T PRK08273 311 YPMEVNLVGDAAETLRALLPLLERKKDRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRLPDNAILTADSG 390 (597)
T ss_pred CCCCceEecCHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCc
Confidence 222 2478999999988776432 112 111 1111000000011123469999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhccc-HHHHHHHHHh-----CCceEE
Q 044559 412 DSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQDVSTMLRC-----GQKTII 484 (585)
Q Consensus 412 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~eL~ta~~~-----~lpv~i 484 (585)
++..|. .++..+++.+++.++++|+|||++|+|||+++|+|+++||+|+|||||+|+ +|||+|++|| ++|+++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lpvii 470 (597)
T PRK08273 391 SCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPRLIV 470 (597)
T ss_pred HHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccCCCEEE
Confidence 987654 456666667789999999999999999999999999999999999999999 6999999999 899999
Q ss_pred EEEeCCcceeeee----ecCCC----cCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEE
Q 044559 485 FLINNGGYTIEVE----IHDGP----YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEV 556 (585)
Q Consensus 485 vV~NN~~~~~~~~----~~~~~----~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV 556 (585)
||+||++|++.+. .+++. +.+++++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||
T Consensus 471 vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIeV 543 (597)
T PRK08273 471 LVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGL-----KGIRVDDPEQLGAAWDEALA--ADRPVVLEV 543 (597)
T ss_pred EEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 9999999998321 12221 234578999999999999 99999999999999999986 899999999
Q ss_pred EcCCCC
Q 044559 557 LVHKDD 562 (585)
Q Consensus 557 ~v~~~~ 562 (585)
.+++++
T Consensus 544 ~~~~~~ 549 (597)
T PRK08273 544 KTDPNV 549 (597)
T ss_pred EeCCCC
Confidence 999876
No 28
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.2e-87 Score=741.53 Aligned_cols=501 Identities=20% Similarity=0.259 Sum_probs=408.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
.++++++|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+||||||||+||+ +||++|+|||++|+
T Consensus 12 ~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 91 (564)
T PRK08155 12 RFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNL 91 (564)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHH
Confidence 37999999999999999999999999999999999766689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++|+.+++|||+|+|+.+....+++ .+ |..||..+|+++|||++++++++++++.+++|++.|+++ +
T Consensus 92 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~ 163 (564)
T PRK08155 92 VTAIADARLDSIPLVCITGQVPASMIGTD-----AF---QEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRP 163 (564)
T ss_pred HHHHHHHHhcCCCEEEEeccCCcccccCC-----Cc---cccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998765553 22 345889999999999999999999999999999999987 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++..+.+.. ..+.+.. .. ....++++.+++++++|.+||||+|++|.|+.++++.+++++|||+++
T Consensus 164 GPV~i~iP~Dv~~~~~~~~-~~~~~~~-~~--~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~ 239 (564)
T PRK08155 164 GPVWIDIPKDVQTAVIELE-ALPAPAE-KD--AAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARARELAEKAQ 239 (564)
T ss_pred CcEEEEcCHhHHhhhcccc-cCCCccc-cC--CCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHHC
Confidence 9999999999976432110 1111100 00 011234567999999999999999999999998889999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccC
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANG 339 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~ 339 (585)
+||+||++|||+||++||+++|.+ |..+... .+.++..+.+..++||||.|+..++ +
T Consensus 240 ~pv~tt~~~kg~i~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~ 317 (564)
T PRK08155 240 LPTTMTLMALGMLPKAHPLSLGML-GMHGARSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELG-K 317 (564)
T ss_pred CCEEEcccccccCCCCChhhccCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999987 3322110 1112223455678999999999886 3
Q ss_pred Cccc----cccHHHHHHHHHHHhccCc-chh-hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcc
Q 044559 340 PAFG----CVLMKDFLKALSKRLKSNT-TAY-ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDS 413 (585)
Q Consensus 340 ~~~~----~~~~~~~l~~L~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~ 413 (585)
.... ..|++.+|++|.+.+.... ..| +.+...+...... ......++++.++++.|++.+|++.+++.|+|++
T Consensus 318 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~v~~~l~~~l~~~~iv~~D~G~~ 396 (564)
T PRK08155 318 IKQPHVAIQADVDDVLAQLLPLVEAQPRAEWHQLVADLQREFPCP-IPKADDPLSHYGLINAVAACVDDNAIITTDVGQH 396 (564)
T ss_pred CcCCCeEEecCHHHHHHHHHHhhcccchHHHHHHHHHHHHhChhh-cccCCCCcCHHHHHHHHHHhCCCCeEEEECCchH
Confidence 3222 2489999999988775422 122 1111111110000 0112346899999999999999999999999998
Q ss_pred cccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcc
Q 044559 414 WFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492 (585)
Q Consensus 414 ~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~ 492 (585)
..|. .++..+++.+|+.++++|+|||++|+|+|+++++|+++|++++|||||+|+++||+|++||++|+++||+||++|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpvi~vV~NN~~~ 476 (564)
T PRK08155 397 QMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNNEAL 476 (564)
T ss_pred HHHHHHhccccCCCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 7664 456666667799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeee----cCCCc--CCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChH
Q 044559 493 TIEVEI----HDGPY--NVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSK 565 (585)
Q Consensus 493 ~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
++.+.. +...+ .++ .++||.++|++||+ ++++|++.+||.++|+++++ .++|+||||.+++++.+.
T Consensus 477 g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIeV~~~~~~~~~ 549 (564)
T PRK08155 477 GLVHQQQSLFYGQRVFAATYPGKINFMQIAAGFGL-----ETCDLNNEADPQAALQEAIN--RPGPALIHVRIDAEEKVY 549 (564)
T ss_pred cccHHHHHHhcCCCeeeccCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCCcccC
Confidence 984321 22222 223 46999999999999 99999999999999999986 789999999999877553
No 29
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=6.9e-88 Score=740.01 Aligned_cols=498 Identities=19% Similarity=0.258 Sum_probs=401.8
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHH
Q 044559 46 LGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNA 124 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~ 124 (585)
++++|++.|+++||+||||+||+++.+|++++.+ ++|++|.+|||++|+|||+||||+||+ +||++|+|||++|+++|
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~g 79 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALED-KGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTG 79 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhh-CCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHH
Confidence 5799999999999999999999999999999964 589999999999999999999999999 99999999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-CCcE
Q 044559 125 IAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-SKPV 203 (585)
Q Consensus 125 l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~GPV 203 (585)
|++|+.+++|||+|+|+.++...+.+ . +|..||.++|+++|||+.++++++++++.+++|++.|+++ +|||
T Consensus 80 l~~A~~~~~Pvl~I~G~~~~~~~~~~-----~---~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV 151 (539)
T TIGR02418 80 LATANSEGDPVVAIGGQVKRADLLKL-----T---HQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAA 151 (539)
T ss_pred HHHHhhcCCCEEEEeCCCcccccccC-----c---ccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence 99999999999999999888755443 1 2356889999999999999999999999999999999987 6999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCce
Q 044559 204 YISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAV 283 (585)
Q Consensus 204 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv 283 (585)
||+||.|++..+ .... ..+....+. ...+++..+++++++|.+||||+|++|.|+.++++.++|++|||++|+||
T Consensus 152 ~l~iP~dv~~~~--~~~~-~~~~~~~~~--~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv 226 (539)
T TIGR02418 152 FVSLPQDVVDSP--VSVK-AIPASYAPK--LGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPV 226 (539)
T ss_pred EEEcChhHhhCc--cccc-ccCcccCCC--CCCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCE
Confidence 999999998643 2111 011001111 11224457899999999999999999999998899999999999999999
Q ss_pred EeCCCCccccCCCC-CCccccccCCCCCCc-----------cccc-----cc--cc--CCCccEEEEcCCcceeccCCcc
Q 044559 284 AVMPSAKGLVPEHH-PHFIGTYWGAVSTAF-----------FSVG-----YS--LL--LKKEKAVILQPDRVVIANGPAF 342 (585)
Q Consensus 284 ~tt~~gkg~~~~~h-p~~~g~~~g~~~~~~-----------~~~~-----~~--~~--~~~~~~i~vd~d~~~i~~~~~~ 342 (585)
++|++|||.||++| |+++|+. |..+... ...| |. .+ ..+.++||||.|+..++ ..+.
T Consensus 227 ~tt~~gkg~i~~~~~~~~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~ 304 (539)
T TIGR02418 227 VETFQGAGAVSRELEDHFFGRV-GLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWNSENDATIVHIDVEPAQID-NNYQ 304 (539)
T ss_pred EEccccCcCCCCCCChhhcccC-cCCCcHHHHHHHHhCCEEEEecCcccccCccccCcCCCCeEEEEeCChHHcC-CccC
Confidence 99999999999997 7898875 4333211 1111 11 11 12468999999999887 3332
Q ss_pred cc----ccHHHHHHHHHHHhccCc---c--hh-hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 044559 343 GC----VLMKDFLKALSKRLKSNT---T--AY-ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGD 412 (585)
Q Consensus 343 ~~----~~~~~~l~~L~~~l~~~~---~--~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~ 412 (585)
.+ .|++.+|++|.+.++... . .| +.+++.+.............++++.++++.|++.++++++++.|+|+
T Consensus 305 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~ 384 (539)
T TIGR02418 305 PDLELVGDIASTLDLLAERIPGYELPPDALAILEDLKQQREALDRVPATLKQAHLHPLEIIKAMQAIVTDDVTVTVDMGS 384 (539)
T ss_pred CCeEEecCHHHHHHHHHHhhccccCccchHHHHHHHHHHHHHhhhccccCCCCCcCHHHHHHHHHhhCCCCCEEEECCcH
Confidence 22 478999999988765421 1 11 11211110000000011234689999999999999999999999999
Q ss_pred ccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCc
Q 044559 413 SWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGG 491 (585)
Q Consensus 413 ~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~ 491 (585)
+..|. .++....+.+++.+.++|+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||++|+++||+||++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~ivV~NN~~ 464 (539)
T TIGR02418 385 HYIWMARYFRSYRARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHIIWNDNG 464 (539)
T ss_pred HHHHHHHhcccCCCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHHhCCCeEEEEEECCc
Confidence 87664 34555555668888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeee----cCC-CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHH
Q 044559 492 YTIEVEI----HDG-PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKE 566 (585)
Q Consensus 492 ~~~~~~~----~~~-~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~ 566 (585)
|++.+.. ++. ...++.++||.++|++||+ ++.+|++++||+++|+++++ .++|+||||.+++++.+..
T Consensus 465 y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~eL~~al~~a~~--~~~p~lIev~v~~~~~~~~ 537 (539)
T TIGR02418 465 YNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGA-----KGLRVESPDQLEPTLRQAME--VEGPVVVDIPVDYSDNPKL 537 (539)
T ss_pred chHHHHHHHHhcCCcccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEecCcccccc
Confidence 9984321 121 1234568999999999999 99999999999999999986 8899999999999887643
No 30
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=2e-87 Score=740.75 Aligned_cols=504 Identities=22% Similarity=0.268 Sum_probs=403.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChh
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE---PGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVG 117 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG 117 (585)
..++++++|++.|+++||++|||+||+++++|+++|.+. ++|++|.+|||++|+|||+||+|+||+ +||++|+|||
T Consensus 8 ~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG 87 (585)
T CHL00099 8 REKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSGPG 87 (585)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCCCc
Confidence 347999999999999999999999999999999999642 359999999999999999999999999 9999999999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhh
Q 044559 118 GLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTAL 197 (585)
Q Consensus 118 ~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~ 197 (585)
++|+++||++|+.+++|||+|+|+.++...+++ .+ |..||..+++++|||+.++.+++++++.+++||+.|+
T Consensus 88 ~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~ 159 (585)
T CHL00099 88 ATNLVTGIATAQMDSVPLLVITGQVGRAFIGTD-----AF---QEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAK 159 (585)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----Cc---cccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999988765543 22 3457889999999999999999999999999999999
Q ss_pred hc-CCcEEEEecCCCCCCCCCCCCCCCCC--CcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHH
Q 044559 198 KE-SKPVYISVACNLPAIPHPTFSREPVP--FSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVE 274 (585)
Q Consensus 198 ~~-~GPV~i~iP~dv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~ 274 (585)
++ +|||||+||.|++..+.+.....+.. ...........++++.+++++++|.+||||+|++|.|+.++++.++|++
T Consensus 160 ~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~ 239 (585)
T CHL00099 160 HGRPGPVLIDIPKDVGLEKFDYYPPEPGNTIIKILGCRPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITE 239 (585)
T ss_pred cCCCCeEEEecChhhhhhhcccccccccccccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHHH
Confidence 86 69999999999976422111110100 0011101111235668999999999999999999999998899999999
Q ss_pred HHHHhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCc
Q 044559 275 LADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDR 333 (585)
Q Consensus 275 lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~ 333 (585)
|||++|+||+||++|||+||++||+++|.+ |..+... .+.+|..+.++.++||||.|+
T Consensus 240 lae~lg~PV~tt~~~kg~~~~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~ 318 (585)
T CHL00099 240 LAELYKIPVTTTLMGKGIFDEDHPLCLGML-GMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDP 318 (585)
T ss_pred HHHHHCCCEEEccccCcCCCCCCCcccCCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCH
Confidence 999999999999999999999999999986 4332211 111222345567899999999
Q ss_pred ceeccCCcccc----ccHHHHHHHHHHHhccCc--------chh-hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhC
Q 044559 334 VVIANGPAFGC----VLMKDFLKALSKRLKSNT--------TAY-ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKML 400 (585)
Q Consensus 334 ~~i~~~~~~~~----~~~~~~l~~L~~~l~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l 400 (585)
.+++ ..+..+ .|++.||++|.+.+.... ..| +.+...+ ............++++.++++.|++.+
T Consensus 319 ~~i~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~~~ 396 (585)
T CHL00099 319 AEIG-KNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWR-KEYPLLIPKPSTSLSPQEVINEISQLA 396 (585)
T ss_pred HHhC-CCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHH-HhChhhccccCCCcCHHHHHHHHHhhC
Confidence 9887 333332 488999999988775321 111 1111111 000000011234799999999999999
Q ss_pred CCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCC
Q 044559 401 SSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQ 480 (585)
Q Consensus 401 ~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~l 480 (585)
+ +++++.|+|++..|...+...++.+|+.+.++|+|||++|+|||+++|.|+|+|++|+|||||+|++|||+|++||++
T Consensus 397 ~-d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l 475 (585)
T CHL00099 397 P-DAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNL 475 (585)
T ss_pred C-CeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHHhCC
Confidence 9 899999999987765433222345689899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCcceeeeee----cCCCcC----CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeE
Q 044559 481 KTIIFLINNGGYTIEVEI----HDGPYN----VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLC 552 (585)
Q Consensus 481 pv~ivV~NN~~~~~~~~~----~~~~~~----~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~ 552 (585)
|+++||+||++|++.+.. +.+.+. ....+||.++|++||+ ++++|++.+||.++|+++++ .++|.
T Consensus 476 ~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~ 548 (585)
T CHL00099 476 PIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGI-----KGLRIKSRKDLKSSLKEALD--YDGPV 548 (585)
T ss_pred CeEEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCE
Confidence 999999999999984321 222222 1246899999999999 99999999999999999986 88999
Q ss_pred EEEEEcCCCCCh
Q 044559 553 FIEVLVHKDDTS 564 (585)
Q Consensus 553 vIeV~v~~~~~~ 564 (585)
||||.+++++.+
T Consensus 549 liev~v~~~~~~ 560 (585)
T CHL00099 549 LIDCQVIEDENC 560 (585)
T ss_pred EEEEEECCCccc
Confidence 999999987654
No 31
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-87 Score=738.69 Aligned_cols=491 Identities=19% Similarity=0.261 Sum_probs=397.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
++|++++|++.|+++||+||||+||+++.+|++++.+. +|++|.+|||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 1 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~-~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~ 79 (549)
T PRK06457 1 MPSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKS-KVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHL 79 (549)
T ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhc-CCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhh
Confidence 36999999999999999999999999999999999754 69999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCC
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK 201 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~G 201 (585)
++||++||.+++|||+|||+.+....+++ .+ |..||.++|+++|||++++++++++++.+++|++.|++++|
T Consensus 80 l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~G 151 (549)
T PRK06457 80 LNGLYDAKMDHAPVIALTGQVESDMIGHD-----YF---QEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISKRG 151 (549)
T ss_pred HHHHHHHHhcCCCEEEEecCCCccccCCC-----cc---cccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988755443 23 34689999999999999999999999999999999999889
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCC
Q 044559 202 PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281 (585)
Q Consensus 202 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~ 281 (585)
||||+||.|++..+.+ .. . ....... . +.....+++++++|.+||||+|++|.|++ ++.+++++|||++++
T Consensus 152 PV~l~iP~Dv~~~~~~--~~-~-~~~~~~~-~--~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lAe~~~~ 222 (549)
T PRK06457 152 VAHINLPVDILRKSSE--YK-G-SKNTEVG-K--VKYSIDFSRAKELIKESEKPVLLIGGGTR--GLGKEINRFAEKIGA 222 (549)
T ss_pred CEEEEeCHhHhhcccc--cc-c-ccccCCC-C--CCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHHCC
Confidence 9999999999764221 11 1 1000001 1 11124688999999999999999999996 578999999999999
Q ss_pred ceEeCCCCccccCCCCCCccccccCCCCCCc---------------ccccccccC-CCccEEEEcCCcceeccCCcccc-
Q 044559 282 AVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------FSVGYSLLL-KKEKAVILQPDRVVIANGPAFGC- 344 (585)
Q Consensus 282 Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~~~~~~~~~-~~~~~i~vd~d~~~i~~~~~~~~- 344 (585)
||+||++|||.||++||+++|.+ |..+... ..+++..+. ++.++||||.|+..++ +.+..+
T Consensus 223 PV~tt~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~ii~id~d~~~~~-~~~~~~~ 300 (549)
T PRK06457 223 PIIYTLNGKGILPDLDPKVMGGI-GLLGTKPSIEAMDKADLLIMLGTSFPYVNFLNKSAKVIQVDIDNSNIG-KRLDVDL 300 (549)
T ss_pred CEEEcccccccCCCCChhhccCC-CCCCCHHHHHHHHhCCEEEEECCCCChhhcCCCCCcEEEEeCCHHHhC-CCCCCCe
Confidence 99999999999999999999986 3332211 122222233 3568999999999887 333333
Q ss_pred ---ccHHHHHHHHHHHhccCc-c----hhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccc
Q 044559 345 ---VLMKDFLKALSKRLKSNT-T----AYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFN 416 (585)
Q Consensus 345 ---~~~~~~l~~L~~~l~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~ 416 (585)
.|++.+|+.+........ . ....|.+.... .......++++.++++.|++.+|++++++.|+|++..|
T Consensus 301 ~i~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~g~~~~~ 376 (549)
T PRK06457 301 SYPIPVAEFLNIDIEEKSDKFYEELKGKKEDWLDSISK----QENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTGNVTMW 376 (549)
T ss_pred EEecCHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH----hhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHH
Confidence 478899954332111100 0 01122211000 00112346899999999999999999999999998766
Q ss_pred c-ccccccCCCeeeecCCcccccchhHHHHhhhhcCC-CCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCccee
Q 044559 417 C-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVP-EKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI 494 (585)
Q Consensus 417 ~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p-~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~ 494 (585)
. .++..+++.+++.+.++|+|||++|+|||+++++| +|+||+++|||||+|++|||+|+++|++|+++||+||++|++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~ivV~NN~~~g~ 456 (549)
T PRK06457 377 TARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNSKLGM 456 (549)
T ss_pred HHHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHHHCCCeEEEEEECCccch
Confidence 4 34555556678988999999999999999999998 999999999999999999999999999999999999999998
Q ss_pred eee---ec--CCCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCCh
Q 044559 495 EVE---IH--DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 495 ~~~---~~--~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
.+. .+ .....++.++||.++|++||+ ++++|++++||+++|+++++ .++|+||||.+++++.+
T Consensus 457 i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIeV~i~~~~~~ 524 (549)
T PRK06457 457 IKFEQEVMGYPEWGVDLYNPDFTKIAESIGF-----KGFRLEEPKEAEEIIEEFLN--TKGPAVLDAIVDPNERP 524 (549)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCccccC
Confidence 432 11 112345567999999999999 99999999999999999996 88999999999987754
No 32
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.9e-87 Score=740.24 Aligned_cols=504 Identities=20% Similarity=0.221 Sum_probs=408.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhh
Q 044559 40 NPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGG 118 (585)
Q Consensus 40 ~~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~ 118 (585)
..++++++++|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||+ +||++|+|||+
T Consensus 12 ~~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~ 90 (571)
T PRK07710 12 EEKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYD-CGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGA 90 (571)
T ss_pred ccccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccH
Confidence 3445899999999999999999999999999999999975 479999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhh
Q 044559 119 LSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK 198 (585)
Q Consensus 119 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~ 198 (585)
+|+++||++||.+++|||+|||+.+....+++ .+ |..||..+|+++|||++++.+++++++.+++|++.|++
T Consensus 91 ~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~ 162 (571)
T PRK07710 91 TNVVTGLADAMIDSLPLVVFTGQVATSVIGSD-----AF---QEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATT 162 (571)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCccccCCC-----Cc---cccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998765553 22 34589999999999999999999999999999999998
Q ss_pred c-CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHH
Q 044559 199 E-SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELAD 277 (585)
Q Consensus 199 ~-~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae 277 (585)
+ +|||||+||.|++..+.+.......+. ....+...+++..+++++++|.+|+||+|++|.|+.++++.++|++|+|
T Consensus 163 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae 240 (571)
T PRK07710 163 GRPGPVLIDIPKDMVVEEGEFCYDVQMDL--PGYQPNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAE 240 (571)
T ss_pred CCCCcEEEEcChhHhhccccccccccccc--cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHHHHHHH
Confidence 7 699999999999764311100000000 0000111234567999999999999999999999988889999999999
Q ss_pred HhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCccee
Q 044559 278 ACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVI 336 (585)
Q Consensus 278 ~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i 336 (585)
++|+||+||++|||+||++||+++|.+ |..+... .+..|..+.++.++||||.|+..+
T Consensus 241 ~~~~pv~tt~~~kg~i~~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i 319 (571)
T PRK07710 241 QQEIPVVHTLLGLGGFPADHPLFLGMA-GMHGTYTANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEI 319 (571)
T ss_pred HhCCCEEEcCccCccCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHh
Confidence 999999999999999999999999976 4333211 111233355667899999999988
Q ss_pred ccCCcccc----ccHHHHHHHHHHHhccCc--chhh-hhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEec
Q 044559 337 ANGPAFGC----VLMKDFLKALSKRLKSNT--TAYE-NYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAE 409 (585)
Q Consensus 337 ~~~~~~~~----~~~~~~l~~L~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d 409 (585)
+ ..+..+ .|++.+|++|.+.+.... ..|. .++.......... .....++++..+++.|++.++++++++.|
T Consensus 320 g-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~iv~~d 397 (571)
T PRK07710 320 G-KNVPTEIPIVADAKQALQVLLQQEGKKENHHEWLSLLKNWKEKYPLSY-KRNSESIKPQKAIEMLYEITKGEAIVTTD 397 (571)
T ss_pred c-CcCCCCeEEecCHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhChhhh-cCCCCCcCHHHHHHHHHhhCCCCeEEEEC
Confidence 7 332222 489999999988765321 1221 1111110000000 11134689999999999999999999999
Q ss_pred CCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEe
Q 044559 410 TGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLIN 488 (585)
Q Consensus 410 ~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~N 488 (585)
+|++..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+++||+++|||||+|+++||+|++||++|+++||+|
T Consensus 398 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~ivV~N 477 (571)
T PRK07710 398 VGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILN 477 (571)
T ss_pred CcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEE
Confidence 99987664 44666666679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeee----cCCCc--CCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCC
Q 044559 489 NGGYTIEVEI----HDGPY--NVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKD 561 (585)
Q Consensus 489 N~~~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~ 561 (585)
|++|++.+.. +++.+ ..+ .++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.++++
T Consensus 478 N~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lieV~vd~~ 550 (571)
T PRK07710 478 NEALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGI-----KGVRIDDELEAKEQLQHAIE--LQEPVVIDCRVLQS 550 (571)
T ss_pred CchHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEecCc
Confidence 9999984322 22222 222 46999999999999 99999999999999999986 78999999999987
Q ss_pred CCh
Q 044559 562 DTS 564 (585)
Q Consensus 562 ~~~ 564 (585)
+.+
T Consensus 551 ~~~ 553 (571)
T PRK07710 551 EKV 553 (571)
T ss_pred ccc
Confidence 754
No 33
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-87 Score=738.29 Aligned_cols=499 Identities=18% Similarity=0.211 Sum_probs=405.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
++++++|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+|||+||||+||+ +||++|+|||.+|++
T Consensus 3 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~ 82 (574)
T PRK09124 3 QTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLI 82 (574)
T ss_pred ccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHH
Confidence 7999999999999999999999999999999999765689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCc
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKP 202 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GP 202 (585)
+||++|+.+++|||+|+|+.+....+++. + |..||.++|+++|||++++.+++++++.+++|++.|++++||
T Consensus 83 ~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~---Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~gP 154 (574)
T PRK09124 83 NGLFDCHRNHVPVLAIAAHIPSSEIGSGY-----F---QETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILNRGV 154 (574)
T ss_pred HHHHHHhhcCCCEEEEecCCccccCCCCC-----c---cccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999988666542 2 345889999999999999999999999999999999988899
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCc
Q 044559 203 VYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYA 282 (585)
Q Consensus 203 V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~P 282 (585)
|||+||.|++..+.+.. .........+ ....++++.+++++++|.+||||+|++|.|+. ++.++|.+|||++|+|
T Consensus 155 V~l~iP~Dv~~~~~~~~-~~~~~~~~~~--~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lae~l~~P 229 (574)
T PRK09124 155 AVVVLPGDVALKPAPER-ATPHWYHAPQ--PVVTPAEEELRKLAALLNGSSNITLLCGSGCA--GAHDELVALAETLKAP 229 (574)
T ss_pred EEEEeChhhhhCccccc-cccccccCCC--CCCCCCHHHHHHHHHHHHcCCCCEEEECcChH--hHHHHHHHHHHHhCCc
Confidence 99999999977532211 0000000000 11123456789999999999999999999984 6889999999999999
Q ss_pred eEeCCCCccccCCCCCCccccccCCCCCCc---------------cccccccc-CCCccEEEEcCCcceeccCCcccc--
Q 044559 283 VAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------FSVGYSLL-LKKEKAVILQPDRVVIANGPAFGC-- 344 (585)
Q Consensus 283 v~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~~~~~~~~-~~~~~~i~vd~d~~~i~~~~~~~~-- 344 (585)
|+||++|||+||++||+++|.+ |..+... ..+.+..+ .++.++||||.|+..++ .....+
T Consensus 230 V~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~ii~id~d~~~~~-~~~~~~~~ 307 (574)
T PRK09124 230 IVHALRGKEHVEYDNPYDVGMT-GLIGFSSGYHAMMNCDTLLMLGTDFPYRQFYPTDAKIIQIDINPGSLG-RRSPVDLG 307 (574)
T ss_pred eEEcccccccCCCCCcccccCC-ccCCCHHHHHHHHhCCEEEEECCCCCcccccCCCCcEEEeeCCHHHhC-CCCCCCeE
Confidence 9999999999999999999976 3333211 22223222 34568999999999887 333332
Q ss_pred --ccHHHHHHHHHHHhccCc-c-hhhhhcc----ccCCC-CCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccc
Q 044559 345 --VLMKDFLKALSKRLKSNT-T-AYENYHR----IYVPE-GQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWF 415 (585)
Q Consensus 345 --~~~~~~l~~L~~~l~~~~-~-~~~~~~~----~~~~~-~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~ 415 (585)
.|++.+|++|.+.+..+. . +.+.+.+ .+... ..........++++..+++.|++.++++++++.|+|++..
T Consensus 308 i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~ 387 (574)
T PRK09124 308 LVGDVKATLAALLPLLEEKTDRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFAADDAIFTCDVGTPTV 387 (574)
T ss_pred EEccHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcCCCcEEEEcCCHHHH
Confidence 479999999988765322 1 1111111 00000 0000111234689999999999999999999999999987
Q ss_pred ccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCccee
Q 044559 416 NCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI 494 (585)
Q Consensus 416 ~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~ 494 (585)
|.. ++..+++.+|+.+.++|+|||++|+|||+++|+|+|+||+|+|||||+|++|||+|++||++|+++||+||++|++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~ 467 (574)
T PRK09124 388 WAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIVVFNNSVLGF 467 (574)
T ss_pred HHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHHhCCCeEEEEEeCCcccc
Confidence 643 4556666779999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeee--cCC---CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCCh
Q 044559 495 EVEI--HDG---PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 495 ~~~~--~~~---~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
.+.. ..+ .++++.++||.++|++||+ ++++|++++||+++|+++++ .++|+||||.+++++.+
T Consensus 468 i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIev~i~~~~~~ 535 (574)
T PRK09124 468 VAMEMKAGGYLTDGTDLHNPDFAAIAEACGI-----TGIRVEKASELDGALQRAFA--HDGPALVDVVTAKQELA 535 (574)
T ss_pred HHHHHHhcCCccccCcCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecCcccC
Confidence 4211 111 2345677999999999999 99999999999999999986 88999999999987754
No 34
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-87 Score=734.97 Aligned_cols=498 Identities=18% Similarity=0.236 Sum_probs=406.1
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
||++++|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 3 ~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~ 82 (578)
T PRK06546 3 KTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLI 82 (578)
T ss_pred ccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHH
Confidence 7999999999999999999999999999999999876689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCc
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKP 202 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GP 202 (585)
+||++|+.+++|||+|+|+.+....+++. + |..||.++|+++|||+++|++++++++.+++|++.|++++||
T Consensus 83 ~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-----~---Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GP 154 (578)
T PRK06546 83 NGLYDAHRSGAPVLAIASHIPSAQIGSGF-----F---QETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVAGGGV 154 (578)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCCC-----c---cccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999887666542 2 345788999999999999999999999999999999988999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCc
Q 044559 203 VYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYA 282 (585)
Q Consensus 203 V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~P 282 (585)
|||+||.|++..+.+.. ..+ ....+......++++.+++++++|.+||||+|++|.|++ ++.+++.+|||++|+|
T Consensus 155 V~l~lP~Dv~~~~~~~~-~~~--~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~--~a~~~l~~lae~~g~P 229 (578)
T PRK06546 155 SVVTLPGDIADEPAPEG-FAP--SVISPRRPTVVPDPAEVRALADAINEAKKVTLFAGAGVR--GAHAEVLALAEKIKAP 229 (578)
T ss_pred EEEEcChhhhhcccccc-ccc--cccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchH--HHHHHHHHHHHHhCcc
Confidence 99999999976432210 000 000111111123567899999999999999999999997 5889999999999999
Q ss_pred eEeCCCCccccCCCCCCccccccCCCCCCc---------------ccccccccCCCccEEEEcCCcceeccCCccc----
Q 044559 283 VAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------FSVGYSLLLKKEKAVILQPDRVVIANGPAFG---- 343 (585)
Q Consensus 283 v~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~~~~~~~~~~~~~~i~vd~d~~~i~~~~~~~---- 343 (585)
|++|++|||+||++||+++|+. |..+... ..+.|..+.++.++||||.|+..++ .....
T Consensus 230 v~~t~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~I~vd~d~~~~~-~~~~~~~~i 307 (578)
T PRK06546 230 VGHSLRGKEWIQYDNPFDVGMS-GLLGYGAAHEAMHEADLLILLGTDFPYDQFLPDVRTAQVDIDPEHLG-RRTRVDLAV 307 (578)
T ss_pred eEECcccccCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEEcCCCChhhcCCCCcEEEEeCCHHHhC-CCCCCCeEE
Confidence 9999999999999999999975 4433211 2233334556678999999999887 33222
Q ss_pred cccHHHHHHHHHHHhccCcc-hh-hhh---ccccCCCC---CCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccc
Q 044559 344 CVLMKDFLKALSKRLKSNTT-AY-ENY---HRIYVPEG---QPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWF 415 (585)
Q Consensus 344 ~~~~~~~l~~L~~~l~~~~~-~~-~~~---~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~ 415 (585)
..|++.+|++|.+.+..+.. .| ..+ .+....+. .........++++..+++.|++.++++++++.|+|++..
T Consensus 308 ~~D~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~ 387 (578)
T PRK06546 308 HGDVAETIRALLPLVKEKTDRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELAADDAVFTVDTGMCNV 387 (578)
T ss_pred EcCHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhccCCcEEEECCcHHHH
Confidence 24889999999988754321 11 111 11100000 000111234699999999999999999999999999887
Q ss_pred cccc-ccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCccee
Q 044559 416 NCQK-LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI 494 (585)
Q Consensus 416 ~~~~-~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~ 494 (585)
|... +...++.+++.+.++|+|||++|+|||+++|+|+++||+|+|||||+|+++||+|+++|++|+++||+||++|++
T Consensus 388 ~~~~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~~vV~NN~~~g~ 467 (578)
T PRK06546 388 WAARYITPNGRRRVIGSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVVVFNNSTLGM 467 (578)
T ss_pred HHHHhcCCCCCceEEccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHHhCCCeEEEEEECCcccc
Confidence 6543 444455668888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred ee--eecCC---CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCC
Q 044559 495 EV--EIHDG---PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 495 ~~--~~~~~---~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
.+ +...+ ...++.++||.++|++||+ ++.+|++++||.++|+++++ .+||+||||.+++++.
T Consensus 468 i~~~q~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~lIev~~~~~~~ 534 (578)
T PRK06546 468 VKLEMLVDGLPDFGTDHPPVDYAAIAAALGI-----HAVRVEDPKDVRGALREAFA--HPGPALVDVVTDPNAL 534 (578)
T ss_pred HHHHHHhcCCCcccccCCCCCHHHHHHHCCC-----eeEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCCcc
Confidence 42 11111 1234578999999999999 99999999999999999986 8899999999998763
No 35
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-87 Score=736.25 Aligned_cols=502 Identities=22% Similarity=0.296 Sum_probs=403.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
+|+++++|++.|+++||++|||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 4 ~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~ 82 (542)
T PRK05858 4 TGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGARE-EGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNG 82 (542)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHH
Confidence 5899999999999999999999999999999999965 479999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++|+.+++|||+|+|+.+....+++. + |..||..+|+++|||++++++++++++.+++|++.|+++ +
T Consensus 83 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~-----~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 154 (542)
T PRK05858 83 MSAMAAAQFNQSPLVVLGGRAPALRWGMGS-----L---QEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHR 154 (542)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCCCC-----C---cccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999987666542 2 345889999999999999999999999999999999986 7
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++..+.+.. ..+.+..... ....++++.+++++++|.+||||+|++|.|++++++.+++++|||++|
T Consensus 155 GPV~l~iP~dv~~~~~~~~-~~~~~~~~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg 231 (542)
T PRK05858 155 GPVFVDFPMDHAFSMADDD-GRPGALTELP--AGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELG 231 (542)
T ss_pred CeEEEEcChhhhhcccccc-ccccccccCC--CCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHhC
Confidence 9999999999986432110 0111110000 111235667999999999999999999999998899999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCC----------CCCc-ccccccccCCCccEEEEcCCcceeccCCccc----cc
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAV----------STAF-FSVGYSLLLKKEKAVILQPDRVVIANGPAFG----CV 345 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~----------~~~~-~~~~~~~~~~~~~~i~vd~d~~~i~~~~~~~----~~ 345 (585)
+||+||++|||.||++||+++|...... +... ....+..+.++.++||||.|+..++ ..... ..
T Consensus 232 ~pV~tt~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~ 310 (542)
T PRK05858 232 IPVLMNGMGRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGVFGGTAQLVHVDDAPPQRA-HHRPVAAGLYG 310 (542)
T ss_pred CCEEEcCCcCCCCCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccccCCCCEEEEECCCHHHhc-CCCCCceEEeC
Confidence 9999999999999999999987531100 0000 0001122334578999999998887 32222 23
Q ss_pred cHHHHHHHHHHHhccCcc--hh-hhhccccC---CCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccc-c
Q 044559 346 LMKDFLKALSKRLKSNTT--AY-ENYHRIYV---PEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNC-Q 418 (585)
Q Consensus 346 ~~~~~l~~L~~~l~~~~~--~~-~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~ 418 (585)
|++.+|++|.+.+..... .| ..+.+.+. ............++++.++++.|++.+|++.+++.|+|++..|. .
T Consensus 311 d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~ 390 (542)
T PRK05858 311 DLSAILSALAGAGGDRTDHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGR 390 (542)
T ss_pred CHHHHHHHHHHhcccccCcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHH
Confidence 789999999887754211 12 11111100 00000011223469999999999999999999999999987554 3
Q ss_pred cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeee-
Q 044559 419 KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVE- 497 (585)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~- 497 (585)
++....+.+|+.++++|+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||++|+++||+||++|++.+.
T Consensus 391 ~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~ 470 (542)
T PRK05858 391 YIDPYRPGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNNGIWGLEKHP 470 (542)
T ss_pred HccccCCCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEEEEeCCchhhHHHH
Confidence 4555555568888889999999999999999999999999999999999999999999999999999999999998332
Q ss_pred ---ecCC-CcCCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCCh
Q 044559 498 ---IHDG-PYNVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 498 ---~~~~-~~~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
.+.. ...++ +++||.++|++||+ ++.+|++++||+++|+++++ .++|+||||.+++++.+
T Consensus 471 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIev~~~~~~~~ 535 (542)
T PRK05858 471 MEALYGYDVAADLRPGTRYDEVVRALGG-----HGELVTVPAELGPALERAFA--SGVPYLVNVLTDPSVAY 535 (542)
T ss_pred HHHhcCCccccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCcEEEEEEECCCcCC
Confidence 1121 12233 67999999999999 99999999999999999996 88999999999988654
No 36
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=1.3e-86 Score=732.79 Aligned_cols=501 Identities=23% Similarity=0.291 Sum_probs=406.7
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
|+++++|++.|+++||+||||+||+++++|+++|.++++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 6899999999999999999999999999999999766789999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-CC
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-SK 201 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~G 201 (585)
+||++|+.+++|||+|+|+++....+.+ .+ |..||..+|+++|||++++++++++++.+++|++.|+++ +|
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~G 152 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSD-----AF---QEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPG 152 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCC-----CC---cccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999988765543 22 345899999999999999999999999999999999987 69
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCC
Q 044559 202 PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281 (585)
Q Consensus 202 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~ 281 (585)
||||+||.|++..+ .....+.........+...+.+..+++++++|.+||||+|++|.|++++++.++|++|+|++++
T Consensus 153 PV~i~iP~dv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~ 230 (558)
T TIGR00118 153 PVLVDLPKDVTTAE--IEYPYPEKVNLPGYRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQI 230 (558)
T ss_pred eEEEEcChhhhhhh--ccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCC
Confidence 99999999997642 2111110000000001112245569999999999999999999999988999999999999999
Q ss_pred ceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccCC
Q 044559 282 AVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANGP 340 (585)
Q Consensus 282 Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~~ 340 (585)
||+||++|||+||++||+++|.+ |..+... .+.+|..+.++.++||||.|+..++ ..
T Consensus 231 pv~tt~~~kg~~~e~hp~~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 308 (558)
T TIGR00118 231 PVTTTLMGLGSFPEDHPLSLGML-GMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIG-KN 308 (558)
T ss_pred CEEEccccCCCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhC-Cc
Confidence 99999999999999999999986 3332211 1223334556678999999998876 33
Q ss_pred ccc----cccHHHHHHHHHHHhccCc----chhhh-hccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 044559 341 AFG----CVLMKDFLKALSKRLKSNT----TAYEN-YHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETG 411 (585)
Q Consensus 341 ~~~----~~~~~~~l~~L~~~l~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G 411 (585)
... ..|++.+|++|.+.+.... ..|.+ .++.+...... ......++++..+++.|++.+|++++++.|+|
T Consensus 309 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g 387 (558)
T TIGR00118 309 VRVDIPIVGDARNVLEELLKKLFELKERKESAWLEQINKWKKEYPLK-MDYTEEGIKPQQVIEELSRVTKDEAIVTTDVG 387 (558)
T ss_pred CCCCeEEecCHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHhChhh-ccCCCCCcCHHHHHHHHHhhCCCCeEEEeCCc
Confidence 222 2488999999998774321 12211 11111010000 01123468999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCC
Q 044559 412 DSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490 (585)
Q Consensus 412 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 490 (585)
++..|. .++..+++.+|+.++++|+|||++|+|||++++.|+++|++++|||||+|+++||+|++|+++|+++||+||+
T Consensus 388 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~vv~NN~ 467 (558)
T TIGR00118 388 QHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKILILNNR 467 (558)
T ss_pred HHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEeCC
Confidence 986554 4555666667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeee----cCCCcC--CC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCC
Q 044559 491 GYTIEVEI----HDGPYN--VI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 491 ~~~~~~~~----~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
+|++.+.. +.+.+. .+ +++||.++|++||+ ++++|++.++|+++|+++++ .++|+||||++++++.
T Consensus 468 ~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~~p~liev~~~~~~~ 540 (558)
T TIGR00118 468 YLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGI-----KGIRIEKPEELDEKLKEALS--SNEPVLLDVVVDKPEN 540 (558)
T ss_pred chHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEeCCccc
Confidence 99983211 222221 22 36999999999999 99999999999999999986 7899999999997765
Q ss_pred h
Q 044559 564 S 564 (585)
Q Consensus 564 ~ 564 (585)
+
T Consensus 541 ~ 541 (558)
T TIGR00118 541 V 541 (558)
T ss_pred c
Confidence 4
No 37
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.4e-86 Score=734.92 Aligned_cols=504 Identities=22% Similarity=0.263 Sum_probs=404.2
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 4 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l 83 (574)
T PRK06882 4 LSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAI 83 (574)
T ss_pred ccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHH
Confidence 8999999999999999999999999999999999764579999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-CC
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-SK 201 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~G 201 (585)
+||++||.+++|||+|+|+.+....+++ .+ |..||..+|+++|||+.++++++++++.+++|++.|.++ +|
T Consensus 84 ~~i~~A~~~~~Pvlvi~G~~~~~~~~~~-----~~---q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~G 155 (574)
T PRK06882 84 TGIATAYTDSVPLVILSGQVPSNLIGTD-----AF---QECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPG 155 (574)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCC-----cc---cccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998765543 22 346889999999999999999999999999999999986 69
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCC
Q 044559 202 PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281 (585)
Q Consensus 202 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~ 281 (585)
||||+||.|++....+.....+......+..+...+++..+++++++|.+||||+|++|.|+.++++.++|++|+|++++
T Consensus 156 PV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~ 235 (574)
T PRK06882 156 PVVIDIPKDMVNPANKFTYEYPEEVSLRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNL 235 (574)
T ss_pred CEEEecCHHHhhhhcccccccCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHhCC
Confidence 99999999997632110000000000000001011245679999999999999999999999988999999999999999
Q ss_pred ceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccCC
Q 044559 282 AVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANGP 340 (585)
Q Consensus 282 Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~~ 340 (585)
||+||++|||+||++||+++|.+ |..+... .+.+|..+.++.++||||.|+..++ ..
T Consensus 236 pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~~ 313 (574)
T PRK06882 236 PVTSSLMGLGAYPSTDKQFLGML-GMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSIS-KN 313 (574)
T ss_pred CEEEcCccCcCCCCCChhhcCCC-cccccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhc-Cc
Confidence 99999999999999999999976 4332211 1222333455678999999999887 32
Q ss_pred ccc----cccHHHHHHHHHHHhccCc--------c-hhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 044559 341 AFG----CVLMKDFLKALSKRLKSNT--------T-AYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVI 407 (585)
Q Consensus 341 ~~~----~~~~~~~l~~L~~~l~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv 407 (585)
+.. ..|++.+|++|.+.+.... . +++.+.+.+....... .....++++..+++.|++.++++.+++
T Consensus 314 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~~~l~~~~ii~ 392 (574)
T PRK06882 314 VPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLEF-DRTSDVIKPQQVVEAIYRLTNGDAYVA 392 (574)
T ss_pred cCCceEEecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhhh-ccCCCCcCHHHHHHHHHhhcCCCeEEE
Confidence 222 2488999999988774311 1 1111111110000000 011236899999999999999999999
Q ss_pred ecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEE
Q 044559 408 AETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFL 486 (585)
Q Consensus 408 ~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV 486 (585)
.|+|++..|. .++..+.+.+|+.++++|+|||++|+|||++++.|+++||+++|||||+|+++||+|++||++|+++||
T Consensus 393 ~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lpv~~vV 472 (574)
T PRK06882 393 SDVGQHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIVS 472 (574)
T ss_pred ecCchhHHHHHHhccccCCCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEE
Confidence 9999986654 455666666688889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcceeeee----ecCCCcC--CC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcC
Q 044559 487 INNGGYTIEVE----IHDGPYN--VI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVH 559 (585)
Q Consensus 487 ~NN~~~~~~~~----~~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~ 559 (585)
+||++|++.++ ++++.+. .+ ..+||.++|++||+ ++++|++.+||+++|+++++ ..++|+||||.++
T Consensus 473 ~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~eL~~al~~a~~-~~~~p~liev~i~ 546 (574)
T PRK06882 473 LNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGH-----VGIQIDTPDELEEKLTQAFS-IKDKLVFVDVNVD 546 (574)
T ss_pred EECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh-cCCCcEEEEEEec
Confidence 99999998332 1222221 22 35899999999999 99999999999999999985 2379999999999
Q ss_pred CCCCh
Q 044559 560 KDDTS 564 (585)
Q Consensus 560 ~~~~~ 564 (585)
+++.+
T Consensus 547 ~~~~~ 551 (574)
T PRK06882 547 ETEHV 551 (574)
T ss_pred Ccccc
Confidence 87644
No 38
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=1.9e-86 Score=731.63 Aligned_cols=500 Identities=18% Similarity=0.241 Sum_probs=401.8
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-CCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHH
Q 044559 46 LGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEP-GLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLN 123 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~ 123 (585)
++++|++.|+++||+||||+||+++++|+++|.+++ +|++|.+|||++|+|||+||+|+||+ |||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 479999999999999999999999999999997643 59999999999999999999999999 9999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcE
Q 044559 124 AIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPV 203 (585)
Q Consensus 124 ~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 203 (585)
||++||.+++|||+|+|+.+....+.+ .+ |..||..+|+++|||+.++.+++++++.+++|++.|.+++|||
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV 152 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMD-----TF---QEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVA 152 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCC-----Cc---ceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 999999999999999999988755543 22 3458899999999999999999999999999999999988999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCce
Q 044559 204 YISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAV 283 (585)
Q Consensus 204 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv 283 (585)
||+||.|++..+.+.......+....+. ....++++.+++++++|.+||||+|++|.|++ ++.++|.+|||++++||
T Consensus 153 ~l~iP~Dv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~PV 229 (575)
T TIGR02720 153 VVTIPVDFGWQEIPDNDYYASSVSYQTP-LLPAPDVEAVTRAVQTLKAAERPVIYYGIGAR--KAGEELEALSEKLKIPL 229 (575)
T ss_pred EEEECcchhhccccccccccccccccCC-CCCCCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHhCCCE
Confidence 9999999976432211000001000001 11134567899999999999999999999997 58899999999999999
Q ss_pred EeCCCCccccCCCCCCccccccCCCCCCc---------------ccccccc----cCCCccEEEEcCCcceeccCCccc-
Q 044559 284 AVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------FSVGYSL----LLKKEKAVILQPDRVVIANGPAFG- 343 (585)
Q Consensus 284 ~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~~~~~~~----~~~~~~~i~vd~d~~~i~~~~~~~- 343 (585)
+||++|||.||++||+++|.+ |..+... ..+++.. +..+.++||||.|+..++ +.+..
T Consensus 230 ~tt~~gkg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~~~~~~ 307 (575)
T TIGR02720 230 ISTGLAKGIIEDRYPAYLGSA-YRVAQKPANEALFQADLVLFVGNNYPFAEVSKAFKNTKYFIQIDIDPAKLG-KRHHTD 307 (575)
T ss_pred EEcccccccCCCCCcccccCC-cCCCcHHHHHHHHhCCEEEEeCCCCCccccccccCCCceEEEEeCCHHHhC-CCCCCC
Confidence 999999999999999999986 3322211 1122211 122334599999999887 33322
Q ss_pred ---cccHHHHHHHHHHHhccCcc-hh-hhhc---cccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccc
Q 044559 344 ---CVLMKDFLKALSKRLKSNTT-AY-ENYH---RIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWF 415 (585)
Q Consensus 344 ---~~~~~~~l~~L~~~l~~~~~-~~-~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~ 415 (585)
..|++.+|++|.+.+..... .| ..+. +...............++++..+++.|++.++++++++.|+|++..
T Consensus 308 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~D~g~~~~ 387 (575)
T TIGR02720 308 IAVLADAKKALAAILAQVEPRESTPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDINI 387 (575)
T ss_pred eEEecCHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhCCCCcEEEeCCcHHHH
Confidence 24889999999988754221 12 1111 0000000000112234699999999999999999999999999887
Q ss_pred ccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCccee
Q 044559 416 NCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI 494 (585)
Q Consensus 416 ~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~ 494 (585)
|.. ++..+.+.+|+.+.++|+|||++|+|||+++++|+|+||+++|||||+|++|||+|++||++|+++||+||++|++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~VV~NN~~yg~ 467 (575)
T TIGR02720 388 NSNRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSNCTYGF 467 (575)
T ss_pred HHHHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEEEEeCCccHH
Confidence 753 4566666779999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeee---cCCCc--CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhc--CCCCCCeEEEEEEcCCCCChH
Q 044559 495 EVEI---HDGPY--NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENAT--GPKKDCLCFIEVLVHKDDTSK 565 (585)
Q Consensus 495 ~~~~---~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~--~~~~~gp~vIeV~v~~~~~~~ 565 (585)
.+.. ..+.+ .++.++||.++|++||+ ++++|++.+||+++|++++ + .++|+||||++++++.++
T Consensus 468 i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~-----~~~~v~~~~el~~al~~a~~~~--~~~p~liev~i~~~~~~~ 538 (575)
T TIGR02720 468 IKDEQEDTNQPLIGVDFNDADFAKIAEGVGA-----VGFRVNKIEQLPAVFEQAKAIK--QGKPVLIDAKITGDRPLP 538 (575)
T ss_pred HHHHHHHhCCCcccccCCCCCHHHHHHHCCC-----EEEEeCCHHHHHHHHHHHHhhC--CCCcEEEEEEeCCCCCCC
Confidence 3211 12223 34567999999999999 9999999999999999998 5 789999999999987544
No 39
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=7.1e-87 Score=734.20 Aligned_cols=498 Identities=21% Similarity=0.292 Sum_probs=402.9
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhH
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 119 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~ 119 (585)
+..++++++|++.|+++||+||||+||+++.+|+++|.++++|++|.+|||++|+|||+||||+||+ +||++|+|||++
T Consensus 5 ~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 84 (557)
T PRK08199 5 PRARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGAT 84 (557)
T ss_pred cccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHH
Confidence 4568999999999999999999999999999999999876679999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc
Q 044559 120 SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE 199 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~ 199 (585)
|+++||++||.+++|||+|+|+.+....+++. + |..||..+|+++|||++++++++++++.++||++.|.++
T Consensus 85 N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-----~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~ 156 (557)
T PRK08199 85 NASIGVHTAFQDSTPMILFVGQVARDFREREA-----F---QEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSG 156 (557)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCccccCCCCc-----c---cccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988666542 2 345899999999999999999999999999999999997
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHH
Q 044559 200 -SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADA 278 (585)
Q Consensus 200 -~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 278 (585)
+|||||+||.|++..+ ...... .. ..+. ...++++.+++++++|.+||||+|++|.|+.++++.++|++|+|+
T Consensus 157 ~~GPV~l~iP~dl~~~~--~~~~~~-~~-~~~~--~~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~ 230 (557)
T PRK08199 157 RPGPVVLALPEDVLSET--AEVPDA-PP-YRRV--AAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAER 230 (557)
T ss_pred CCCcEEEEcCHhHhhCc--cccccc-CC-cCCC--CCCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHH
Confidence 6999999999997642 211110 01 1111 112346679999999999999999999999988899999999999
Q ss_pred hCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccC---CCccEEEEcCCcc
Q 044559 279 CGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLL---KKEKAVILQPDRV 334 (585)
Q Consensus 279 ~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~---~~~~~i~vd~d~~ 334 (585)
+|+||++|++|||+||++||+++|.+ |..+... .+..|..+. +..++||||.|+.
T Consensus 231 ~~~pV~tt~~~kg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~ 309 (557)
T PRK08199 231 WGLPVACAFRRQDLFDNRHPNYAGDL-GLGINPALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAE 309 (557)
T ss_pred hCCCEEEcCCcCCCCCCCChhhccCC-cCcCCHHHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHH
Confidence 99999999999999999999999975 3222110 111222222 4568999999999
Q ss_pred eeccCCcccc----ccHHHHHHHHHHHhccCcchhhhhc----cccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 044559 335 VIANGPAFGC----VLMKDFLKALSKRLKSNTTAYENYH----RIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAV 406 (585)
Q Consensus 335 ~i~~~~~~~~----~~~~~~l~~L~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii 406 (585)
.++ .....+ .|++.+|++|.+.+......|..+. +.... ... ......++++..+++.|++.+++++++
T Consensus 310 ~~~-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~l~~~~ii 386 (557)
T PRK08199 310 ELG-RVYRPDLAIVADPAAFAAALAALEPPASPAWAEWTAAAHADYLA-WSA-PLPGPGAVQLGEVMAWLRERLPADAII 386 (557)
T ss_pred HhC-CccCCCeEEecCHHHHHHHHHhcccccchhHHHHHHHHHHHHHh-hcc-ccCCCCCcCHHHHHHHHHHhCCCCeEE
Confidence 887 322222 4799999999876543222222211 11100 000 111223699999999999999999999
Q ss_pred EecCCccccccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEE
Q 044559 407 IAETGDSWFNCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIF 485 (585)
Q Consensus 407 v~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~iv 485 (585)
+.|+|++..|.. ++...++..++. .++|+|||++|+|||+++++|+++||+|+|||||+|+++||+|++++++|+++|
T Consensus 387 ~~d~g~~~~~~~~~~~~~~~~~~~~-~~~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~~~l~i~~v 465 (557)
T PRK08199 387 TNGAGNYATWLHRFFRFRRYRTQLA-PTSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYGLPIIVI 465 (557)
T ss_pred EECChHHHHHHHHhcCcCCCCeEEC-CCCccccchHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 999998876643 344444444554 457999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcceeeee----ecCCCc--CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcC
Q 044559 486 LINNGGYTIEVE----IHDGPY--NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVH 559 (585)
Q Consensus 486 V~NN~~~~~~~~----~~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~ 559 (585)
|+||++|++.+. .+.+.+ .++.++||.++|++||+ ++.+|++++||.++|+++++ .++|+||||.++
T Consensus 466 v~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~li~v~~~ 538 (557)
T PRK08199 466 VVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGG-----HGETVERTEDFAPAFERALA--SGKPALIEIRID 538 (557)
T ss_pred EEeCCcchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeC
Confidence 999999998322 122322 34567899999999999 99999999999999999986 789999999999
Q ss_pred CCCCh
Q 044559 560 KDDTS 564 (585)
Q Consensus 560 ~~~~~ 564 (585)
+++.+
T Consensus 539 ~~~~~ 543 (557)
T PRK08199 539 PEAIT 543 (557)
T ss_pred HHHcC
Confidence 87654
No 40
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=3.2e-86 Score=726.92 Aligned_cols=498 Identities=20% Similarity=0.237 Sum_probs=396.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhc--Cc-cEEEEeCCh
Q 044559 40 NPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSR--GV-GACVVTFTV 116 (585)
Q Consensus 40 ~~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~t--g~-~v~~~tsGp 116 (585)
...+|+++++|++.|+++||++|||+|| .+|+++|.+ .+|++|.+|||++|+||||||+|+| |+ +||++|+||
T Consensus 16 ~~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GP 91 (565)
T PRK06154 16 EAKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAA-AGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGP 91 (565)
T ss_pred CcCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHh-cCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCc
Confidence 4455899999999999999999999995 489999975 5899999999999999999999999 37 999999999
Q ss_pred hhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHh
Q 044559 117 GGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTA 196 (585)
Q Consensus 117 G~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a 196 (585)
|++|+++||++||.+++|||+|+|+.+....+.+ +..||.++|+++|||+.++.+++++++.|++||+.|
T Consensus 92 G~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~----------~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A 161 (565)
T PRK06154 92 GAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA----------PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRL 161 (565)
T ss_pred cHHHHHHHHHHHhhcCCCEEEEeCCCCcccccCC----------CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887643322 124678999999999999999999999999999999
Q ss_pred hhc-CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHH
Q 044559 197 LKE-SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVEL 275 (585)
Q Consensus 197 ~~~-~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~l 275 (585)
+++ +|||||+||.|++..+ .... +.+.. .+......++++.+++++++|.+||||+|++|.|++++++.++|.+|
T Consensus 162 ~s~~~GPV~l~iP~Dv~~~~--~~~~-~~~~~-~~~~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~l 237 (565)
T PRK06154 162 RNGRPGPVVLELPVDVLAEE--LDEL-PLDHR-PSRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKEL 237 (565)
T ss_pred hcCCCceEEEecchHHhhhh--cccc-ccccc-CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHH
Confidence 996 7999999999998643 2110 10000 00011112356679999999999999999999999999999999999
Q ss_pred HHHhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------ccc---ccc-ccCCCccEEEEcCCccee
Q 044559 276 ADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------FSV---GYS-LLLKKEKAVILQPDRVVI 336 (585)
Q Consensus 276 ae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~~~---~~~-~~~~~~~~i~vd~d~~~i 336 (585)
||++++||+||++|||+||++||+++|.. |..+... ..+ .|. .+.++.++||||.|+..+
T Consensus 238 ae~l~~PV~tt~~gkg~~~~~hpl~~G~~-g~~~~~~~~~~~~~aDlvL~lG~~l~~~~~~~~~~~~~~vI~id~d~~~~ 316 (565)
T PRK06154 238 AELLEIPVMTTLNGKSAFPEDHPLALGSG-GRARPATVAHFLREADVLFGIGCSLTRSYYGLPMPEGKTIIHSTLDDADL 316 (565)
T ss_pred HHHhCCCEEECCCcccCCCCCCccccCCC-CCCCcHHHHHHHHhCCEEEEECCCCcccccCccCCCCCeEEEEECCHHHh
Confidence 99999999999999999999999999975 3222110 111 111 134467899999999988
Q ss_pred ccCCccc----cccHHHHHHHHHHHhccCcc-------hhh-h---hccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 044559 337 ANGPAFG----CVLMKDFLKALSKRLKSNTT-------AYE-N---YHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLS 401 (585)
Q Consensus 337 ~~~~~~~----~~~~~~~l~~L~~~l~~~~~-------~~~-~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~ 401 (585)
+ +.+.. ..|++.+|++|.+.++.+.. .|. . +++...............++++.++++.|++.++
T Consensus 317 ~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~ 395 (565)
T PRK06154 317 N-KDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAVD 395 (565)
T ss_pred c-cccCCCeeEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHhcC
Confidence 7 32222 23789999999887754311 111 1 1111000100001122346999999999999997
Q ss_pred -CCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhC
Q 044559 402 -SETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCG 479 (585)
Q Consensus 402 -~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~ 479 (585)
+|.+++.|+|++..|. .++...++.+|+.+.++|+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||+
T Consensus 396 ~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~ 475 (565)
T PRK06154 396 IKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVRER 475 (565)
T ss_pred CCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHHhC
Confidence 4888888999998764 35556666679988899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeCCcceeeeeec---CCCc--CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC-CCCCCeEE
Q 044559 480 QKTIIFLINNGGYTIEVEIH---DGPY--NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG-PKKDCLCF 553 (585)
Q Consensus 480 lpv~ivV~NN~~~~~~~~~~---~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~-~~~~gp~v 553 (585)
+|+++||+||++|++.+..+ ...+ .+ .++||.++|++||+ ++++|++.+||.++|+++++ .+.++|+|
T Consensus 476 lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~-~~~df~~lA~a~G~-----~g~~V~~~~el~~al~~a~~~~~~~~p~l 549 (565)
T PRK06154 476 IPILTILLNNFSMGGYDKVMPVSTTKYRATD-ISGDYAAIARALGG-----YGERVEDPEMLVPALLRALRKVKEGTPAL 549 (565)
T ss_pred CCeEEEEEECCccceeehhhhhhcCcccccC-CCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHhhccCCCeEE
Confidence 99999999999999843321 1222 22 35899999999999 99999999999999999984 13688999
Q ss_pred EEEEcCCCCC
Q 044559 554 IEVLVHKDDT 563 (585)
Q Consensus 554 IeV~v~~~~~ 563 (585)
|||++++++.
T Consensus 550 Iev~v~~~~~ 559 (565)
T PRK06154 550 LEVITSEETA 559 (565)
T ss_pred EEEEeChHHh
Confidence 9999987653
No 41
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.7e-86 Score=734.28 Aligned_cols=499 Identities=21% Similarity=0.306 Sum_probs=404.4
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
|+++++|++.|+++||++|||+||+++.+|+++|.+ .+|++|.+|||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l 79 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYD-SDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLV 79 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHh-CCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHH
Confidence 689999999999999999999999999999999975 479999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-CC
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-SK 201 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~G 201 (585)
+||++|+.+++|||+|+|+.+....+.+ .+ |..||.++|+++|||++++++++++++.+++|++.|+++ +|
T Consensus 80 ~~i~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~G 151 (586)
T PRK06276 80 TGIATAYADSSPVIALTGQVPTKLIGND-----AF---QEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPG 151 (586)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCC-----CC---ccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999998765543 22 345899999999999999999999999999999999987 69
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCc--CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 202 PVYISVACNLPAIPHPTFSREPVPFS--LSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 202 PV~i~iP~dv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
||||+||.|++..+.+.. ..+.+.. .....+...+....+++++++|.+||||+|++|.|+.++++.++|++|+|++
T Consensus 152 PV~l~iP~Dv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~ 230 (586)
T PRK06276 152 PVHIDLPKDVQEGELDLE-KYPIPAKIDLPGYKPTTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELV 230 (586)
T ss_pred cEEEEcChhHHhhhhccc-cccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHH
Confidence 999999999976421110 0011000 0000010122456799999999999999999999999889999999999999
Q ss_pred CCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceecc
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIAN 338 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~ 338 (585)
|+||+||++|||+||++||+++|.+ |..+... .+.++..+.++.++||||.|+..++
T Consensus 231 ~~pv~tt~~~kg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 308 (586)
T PRK06276 231 KIPVCTTLMGKGAFPEDHPLALGMV-GMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIG- 308 (586)
T ss_pred CCCEEEcCCCCccCCCCCcccccCC-CCCCCHHHHHHHHcCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999976 3333211 1112333455678999999998886
Q ss_pred CCccc----cccHHHHHHHHHHHhccCc----chhhhh-ccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCC-----CC
Q 044559 339 GPAFG----CVLMKDFLKALSKRLKSNT----TAYENY-HRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSS-----ET 404 (585)
Q Consensus 339 ~~~~~----~~~~~~~l~~L~~~l~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~-----~~ 404 (585)
..... ..|++.+|++|.+.+.... ..|... .+.. ............++++..+++.|++.+++ ++
T Consensus 309 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~ 387 (586)
T PRK06276 309 KNVRVDVPIVGDAKNVLRDLLAELMKKEIKNKSEWLERVKKLK-KESIPRMDFDDKPIKPQRVIKELMEVLREIDPSKNT 387 (586)
T ss_pred CcCCCceEEecCHHHHHHHHHHhhhhhcccchHHHHHHHHHHH-HhccccccCCCCCcCHHHHHHHHHHhccccCCCCCe
Confidence 33222 2489999999988775421 122111 1111 00001111123468999999999999998 99
Q ss_pred EEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceE
Q 044559 405 AVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTI 483 (585)
Q Consensus 405 iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ 483 (585)
+++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++|.|+++||+++|||||+|+++||+|++||++|++
T Consensus 388 iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ 467 (586)
T PRK06276 388 IITTDVGQNQMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPVV 467 (586)
T ss_pred EEEeCCcHHHHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHHhCCCeE
Confidence 9999999987664 345566667799899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcceeeee----ecCCCc--CCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEE
Q 044559 484 IFLINNGGYTIEVE----IHDGPY--NVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEV 556 (585)
Q Consensus 484 ivV~NN~~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV 556 (585)
+||+||++|++... .++..+ .++ .++||.++|++||+ ++++|++++||+++|+++++ .++|.||||
T Consensus 468 ~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIeV 540 (586)
T PRK06276 468 ICIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPDFVKLAESYGV-----KADRVEKPDEIKEALKEAIK--SGEPYLLDI 540 (586)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 99999999998321 122322 344 46999999999999 99999999999999999986 789999999
Q ss_pred EcCCCC
Q 044559 557 LVHKDD 562 (585)
Q Consensus 557 ~v~~~~ 562 (585)
.+++++
T Consensus 541 ~i~~~~ 546 (586)
T PRK06276 541 IIDPAE 546 (586)
T ss_pred Eecccc
Confidence 999765
No 42
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=4e-86 Score=725.36 Aligned_cols=493 Identities=23% Similarity=0.302 Sum_probs=398.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
+.|++++|++.|+++||++|||+||+++++|+++|.+ .+|++|.+|||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 1 ~~~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~-~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 79 (535)
T PRK07524 1 MTTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAG-SGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNI 79 (535)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 4589999999999999999999999999999999975 489999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCcc-ccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNR-ILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~-~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
++||++||.+++|||+|+|+.+....+++. ++| +..||.++|+++|||++++.+++++++.|++|++.|+++
T Consensus 80 ~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~------~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~ 153 (535)
T PRK07524 80 ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLH------ELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSAR 153 (535)
T ss_pred HHHHHHHHhcCCCEEEEeCCCChhhcCCCCcccc------ccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999887665532 222 345899999999999999999999999999999999986
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+ .......+. ... ....++++.+++++++|.+||||+|++|.|++ ++.++|.+|||++
T Consensus 154 ~GPV~l~iP~Dv~~~~--~~~~~~~~~-~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l 226 (535)
T PRK07524 154 PRPVHIEIPLDVLAAP--ADHLLPAPP-TRP--ARPGPAPAALAQAAERLAAARRPLILAGGGAL--AAAAALRALAERL 226 (535)
T ss_pred CCcEEEEeCHhHHhcc--cccccCccc-ccC--CCCCCCHHHHHHHHHHHHhCCCcEEEECCChH--HHHHHHHHHHHHH
Confidence 7999999999998643 211111000 000 11123567799999999999999999999996 5889999999999
Q ss_pred CCceEeCCCCccccCCCCCCccccccCCCCCC-------c-----ccc---c----c-cccCCCccEEEEcCCcceeccC
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTA-------F-----FSV---G----Y-SLLLKKEKAVILQPDRVVIANG 339 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~-------~-----~~~---~----~-~~~~~~~~~i~vd~d~~~i~~~ 339 (585)
++||+||++|||.||++||+++|...+..... . ..+ . | ..+.++.++||||.|+.+++ .
T Consensus 227 ~~pV~tt~~~kg~~p~~hp~~~G~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~ 305 (535)
T PRK07524 227 DAPVALTINAKGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLA-R 305 (535)
T ss_pred CCCEEEcccccccCCCCChhhccCCCCCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhC-C
Confidence 99999999999999999999998763221110 0 010 1 1 12445678999999998886 3
Q ss_pred Cccc----cccHHHHHHHHHHHhccCcc--hhh-h-hccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 044559 340 PAFG----CVLMKDFLKALSKRLKSNTT--AYE-N-YHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETG 411 (585)
Q Consensus 340 ~~~~----~~~~~~~l~~L~~~l~~~~~--~~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G 411 (585)
.+.. ..|++.+|++|.+.++.+.. .|. . +.+.+.... . . .....+++.++++.|++.++ +.+++.|+|
T Consensus 306 ~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~l~~~l~-~~~i~~d~g 381 (535)
T PRK07524 306 NYPPALALVGDARAALEALLARLPGQAAAADWGAARVAALRQALR-A-E-WDPLTAAQVALLDTILAALP-DAIFVGDST 381 (535)
T ss_pred CcCCCceEecCHHHHHHHHHHhccccCCchhhHHHHHHHHHHhch-h-h-ccccccCHHHHHHHHHHhCC-CCEEEeCCc
Confidence 3222 24899999999988765321 121 1 111110000 0 0 11224577889999999998 688889999
Q ss_pred cccccc-ccccccCCCeeee-cCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeC
Q 044559 412 DSWFNC-QKLKLPKGCGYEF-QMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489 (585)
Q Consensus 412 ~~~~~~-~~~~~~~~~~~~~-~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN 489 (585)
++.+|. .++..+++.+|+. +.++|+|||++|+|||+++|+|+++||+++|||||+|+++||+|++||++|+++||+||
T Consensus 382 ~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~~~lpi~~vV~NN 461 (535)
T PRK07524 382 QPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVLLWNN 461 (535)
T ss_pred HHHHHHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEEC
Confidence 887664 4566666667887 88999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccceeeee-ec--CC--CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCC
Q 044559 490 GGYTIEVE-IH--DG--PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKD 561 (585)
Q Consensus 490 ~~~~~~~~-~~--~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~ 561 (585)
++|++.+. ++ .. .+.++.++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||++++-
T Consensus 462 ~~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~liev~~~~~ 531 (535)
T PRK07524 462 DGYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGC-----AAERVADLEQLQAALRAAFA--RPGPTLIEVDQACW 531 (535)
T ss_pred CchHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCC-----cEEEeCCHHHHHHHHHHHHh--CCCCEEEEEECCcc
Confidence 99997322 11 11 2245577999999999999 99999999999999999996 89999999999874
No 43
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=1.2e-85 Score=724.15 Aligned_cols=507 Identities=19% Similarity=0.228 Sum_probs=398.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
+++++++|++.|+++||+||||+||+++.++++++.+ .+|++|.+|||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 80 (554)
T TIGR03254 2 LTDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQA-KGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNG 80 (554)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhH
Confidence 4789999999999999999999999999999999864 689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++||.+++|||+|+|+.+....+.+ .+..|..||..+|+++|||++++++++++++.|++|++.|+++ |
T Consensus 81 ~~gia~A~~~~~Pvl~I~G~~~~~~~~~~------~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~p 154 (554)
T TIGR03254 81 LTALANATTNCFPMIMISGSSERHIVDLQ------QGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRP 154 (554)
T ss_pred HHHHHHHHhcCCCEEEEEccCCccccccC------CCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999886632111 0112346899999999999999999999999999999999986 7
Q ss_pred CcEEEEecCCCCCCCCCCCCCC-CCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 201 KPVYISVACNLPAIPHPTFSRE-PVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
|||||+||.|++..+.+..... +......+. ....+.++.+++++++|.+||||+|++|.|++++++.++|.+|+|++
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~ 233 (554)
T TIGR03254 155 GGVYLDLPAAVLGQTMEAEKAKKTLVKVVDPA-PKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKT 233 (554)
T ss_pred CcEEEEcCHHHhhccccccccccccccccCCC-CCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHH
Confidence 9999999999987432211000 000000110 11123467799999999999999999999999989999999999999
Q ss_pred CCceEeCCCCccccCCCCCCccccccCC-C---------CCCc---ccccc-cccCCCccEEEEcCCcceeccCCccc--
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGA-V---------STAF---FSVGY-SLLLKKEKAVILQPDRVVIANGPAFG-- 343 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~-~---------~~~~---~~~~~-~~~~~~~~~i~vd~d~~~i~~~~~~~-- 343 (585)
++||+||++|||+||++||+++|..... . +... .+.+| ..+.++.++||||.|+..++ ..+..
T Consensus 234 ~~pv~tt~~gkg~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~-~~~~~~~ 312 (554)
T TIGR03254 234 GIPFLPMSMAKGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMD-SNRPIAA 312 (554)
T ss_pred CCCEEEcCCcceeCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhC-CCcCCce
Confidence 9999999999999999999999854210 0 0111 12222 23445678999999998876 22211
Q ss_pred --cccHHHHHHHHHHHhccC----cchhh----hhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCC--CCEEEecCC
Q 044559 344 --CVLMKDFLKALSKRLKSN----TTAYE----NYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSS--ETAVIAETG 411 (585)
Q Consensus 344 --~~~~~~~l~~L~~~l~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~--~~iiv~d~G 411 (585)
..|++.+|++|.+.++.. ...|. .+++...............++++..+++.|++.+++ +.+++.|+|
T Consensus 313 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~ivv~d~~ 392 (554)
T TIGR03254 313 PVVGDIGSVVQALLSAAKNGGVKPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVNEGA 392 (554)
T ss_pred EEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 238999999999887532 11221 111111000000001123479999999999999974 678888888
Q ss_pred cccccccc-ccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCC
Q 044559 412 DSWFNCQK-LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490 (585)
Q Consensus 412 ~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 490 (585)
++..|... +...++.+++.+.++|+|||++|+|||+++| ++|+||+++|||||+|++|||+|++||++|+++||+||+
T Consensus 393 ~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-~~~~vv~i~GDGsf~m~~~EL~Ta~r~~l~v~~vV~NN~ 471 (554)
T TIGR03254 393 NTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-TGKPVVALEGDSAFGFSGMEVETICRYNLPVCVVIFNNG 471 (554)
T ss_pred hHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc-CCCcEEEEEcCchhcccHHHHHHHHHcCCCEEEEEEeCh
Confidence 77666543 4444555688889999999999999999998 589999999999999999999999999999999999999
Q ss_pred cceeeee--ecCC--CcCCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChH
Q 044559 491 GYTIEVE--IHDG--PYNVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSK 565 (585)
Q Consensus 491 ~~~~~~~--~~~~--~~~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
+|...++ .+.. .+.++ +++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++++.++
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIev~id~~~~~~ 544 (554)
T TIGR03254 472 GIYRGDDVNVVGADPAPTVLVHGARYDKMMKAFGG-----VGYNVTTPDELKAALNEALA--SGKPTLINAVIDPSAGTE 544 (554)
T ss_pred hhhhhhhhhhcCCCCCccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEECCCcCCc
Confidence 9843211 1111 23444 67999999999999 99999999999999999986 789999999999888764
Q ss_pred H
Q 044559 566 E 566 (585)
Q Consensus 566 ~ 566 (585)
.
T Consensus 545 ~ 545 (554)
T TIGR03254 545 S 545 (554)
T ss_pred c
Confidence 3
No 44
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=2.4e-85 Score=725.29 Aligned_cols=500 Identities=21% Similarity=0.291 Sum_probs=404.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
..||++++|++.|+++||+||||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|++|+ +||++|+|||++|
T Consensus 4 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 82 (588)
T PRK07525 4 MKMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPP-AGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITN 82 (588)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhc-cCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 34899999999999999999999999999999999964 579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcC
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKES 200 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 200 (585)
+++||++|+.+++|||+|+|+.+....+.+ .+ |..||.++|+++|||+.++++++++++.+++|++.|++++
T Consensus 83 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~~ 154 (588)
T PRK07525 83 FVTAVATAYWAHTPVVLVTPQAGTKTIGQG-----GF---QEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRES 154 (588)
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCcccCCCC-----CC---cccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999987655443 12 3458899999999999999999999999999999999989
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++..+.+. ..+.+. ... ...+++..+++++++|.+||||+|++|.|++++++.++|++|||++|
T Consensus 155 GPV~i~iP~Dv~~~~~~~--~~~~~~--~~~--~~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~ 228 (588)
T PRK07525 155 GPAQINIPRDYFYGVIDV--EIPQPV--RLE--RGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLD 228 (588)
T ss_pred CCEEEEcChhHhhhhccc--ccCccc--cCC--CCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhC
Confidence 999999999997643221 111110 101 11235667999999999999999999999999999999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCCc---------------c------ccc-c--cccCCCccEEEEcCCccee
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------F------SVG-Y--SLLLKKEKAVILQPDRVVI 336 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~------~~~-~--~~~~~~~~~i~vd~d~~~i 336 (585)
+||+||++|||.||++||+++|.+ |..+... . +.. | ..+.++.++||||.|+..+
T Consensus 229 ~pv~tT~~gkg~~p~~hpl~~G~~-g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~ 307 (588)
T PRK07525 229 APVACGYLHNDAFPGSHPLWVGPL-GYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRI 307 (588)
T ss_pred CCeEEcccccccCCCCCccccccC-cccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHh
Confidence 999999999999999999999976 3222110 1 111 1 1234567899999999988
Q ss_pred ccCCcccc----ccHHHHHHHHHHHhccC------c--------chhhhhcc----ccC-CC-----CCCC-CCCCCCCc
Q 044559 337 ANGPAFGC----VLMKDFLKALSKRLKSN------T--------TAYENYHR----IYV-PE-----GQPP-KCEPKEPL 387 (585)
Q Consensus 337 ~~~~~~~~----~~~~~~l~~L~~~l~~~------~--------~~~~~~~~----~~~-~~-----~~~~-~~~~~~~i 387 (585)
+ ..+..+ .|++.+|++|.+.+... . .....|.. .+. .. +... ......++
T Consensus 308 ~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 386 (588)
T PRK07525 308 G-LTKKVSVGICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYM 386 (588)
T ss_pred C-CCCCCCceEecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCc
Confidence 7 333222 37899999998877532 0 00111110 000 00 0000 00123469
Q ss_pred CHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhc
Q 044559 388 RVNVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQ 466 (585)
Q Consensus 388 ~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~ 466 (585)
++.++++.|++.+|++++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+|++.|+|+||+++|||||+
T Consensus 387 ~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~ 466 (588)
T PRK07525 387 HPRQALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWG 466 (588)
T ss_pred CHHHHHHHHHHhCCCCcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHh
Confidence 999999999999999999999999987765 4456667777999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCceEEEEEeCCcceeeeee----cCCCc--CCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHH
Q 044559 467 VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI----HDGPY--NVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEA 539 (585)
Q Consensus 467 ~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~a 539 (585)
|++|||+|++||++|+++||+||++|++.+.. +++.+ .++ +.+||.++|++||+ ++++|++.+||+++
T Consensus 467 ~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~a 541 (588)
T PRK07525 467 ISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGA-----EGVVVDTQEELGPA 541 (588)
T ss_pred ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHH
Confidence 99999999999999999999999999983221 12222 234 35899999999999 99999999999999
Q ss_pred HHhhcC-CCCCCeEEEEEEcCCCCC
Q 044559 540 IENATG-PKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 540 L~~a~~-~~~~gp~vIeV~v~~~~~ 563 (585)
|+++++ .+.++|+||||.++++..
T Consensus 542 l~~a~~~~~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 542 LKRAIDAQNEGKTTVIEIMCNQELG 566 (588)
T ss_pred HHHHHhcCCCCCcEEEEEEeccccC
Confidence 999986 123699999999997654
No 45
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-85 Score=724.01 Aligned_cols=491 Identities=21% Similarity=0.270 Sum_probs=392.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
+++++++|++.|+++||+||||+||+++.+|++++.++++|++|.+|||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 47999999999999999999999999999999999765689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCcc-ccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNR-ILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~-~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
++||++||.+++|||+|+|+.++...+++. ++| +..||.++|+++|||++++++++++++.|++|++.|+++
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~------~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~ 155 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIH------EAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAP 155 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccc------cccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999998877555442 222 345899999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+.+.. ....+. .. ....++++.+++++++|.+||||+|++|.|+. ++.++|.+||| +
T Consensus 156 ~GPV~l~iP~dv~~~~~~~~-~~~~~~--~~--~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~--~a~~~l~~lae-~ 227 (544)
T PRK07064 156 TGPVSVEIPIDIQAAEIELP-DDLAPV--HV--AVPEPDAAAVAELAERLAAARRPLLWLGGGAR--HAGAEVKRLVD-L 227 (544)
T ss_pred CCcEEEEeCHhHhhcccccc-cccccc--cC--CCCCCCHHHHHHHHHHHHhCCCCEEEECCChH--hHHHHHHHHHH-c
Confidence 79999999999976432111 000011 00 11123566899999999999999999999996 57889999999 9
Q ss_pred CCceEeCCCCccccCCCCCCccccccCCCCC-------Cc-----------ccccccccCCCccEEEEcCCcceeccCCc
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVST-------AF-----------FSVGYSLLLKKEKAVILQPDRVVIANGPA 341 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~-------~~-----------~~~~~~~~~~~~~~i~vd~d~~~i~~~~~ 341 (585)
++||++|++|||+||++||+++|.+.+.... +. .+..|. +....++||||.|+..++ ...
T Consensus 228 ~~pv~~t~~~kg~~~~~hp~~~G~~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~-~~~ 305 (544)
T PRK07064 228 GFGVVTSTQGRGVVPEDHPASLGAFNNSAAVEALYKTCDLLLVVGSRLRGNETLKYS-LALPRPLIRVDADAAADG-RGY 305 (544)
T ss_pred CCCEEEccCccccCCCCChhhcccCCCCHHHHHHHHhCCEEEEecCCCCcccccccc-cCCCCceEEEeCCHHHhC-CcC
Confidence 9999999999999999999999987422111 00 122232 222357999999998886 322
Q ss_pred c----ccccHHHHHHHHHHHhccCc---chhh-hhccccCCCCCCCCCCCCCCcCH-HHHHHHHHhhCCCCCEEEecCCc
Q 044559 342 F----GCVLMKDFLKALSKRLKSNT---TAYE-NYHRIYVPEGQPPKCEPKEPLRV-NVLFQHIQKMLSSETAVIAETGD 412 (585)
Q Consensus 342 ~----~~~~~~~~l~~L~~~l~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l~~~l~~~~iiv~d~G~ 412 (585)
. ...|++.+|++|.+.+.... ..|. .+...+.... . . ....+.+ ..+++.|++.+|++++++.|+|.
T Consensus 306 ~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~l~~~l~~~~ii~~d~~~ 381 (544)
T PRK07064 306 PNDLFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAREAAV-A-D--LRKGLGPYAKLVDALRAALPRDGNWVRDVTI 381 (544)
T ss_pred CCCceEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhh-h-h--cccccCcHHHHHHHHHHhCCCCCEEEeCCcc
Confidence 2 23489999999988775421 1221 1211110000 0 0 0123444 46999999999999999999985
Q ss_pred c-ccc-cccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCC
Q 044559 413 S-WFN-CQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490 (585)
Q Consensus 413 ~-~~~-~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 490 (585)
+ ..| ..++....+.+++.+.+ |+|||++|+|||+++|+|+++||+++|||||+|++|||+|++||++|+++||+||+
T Consensus 382 ~~~~~~~~~~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~ 460 (544)
T PRK07064 382 SNSTWGNRLLPIFEPRANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLMNDG 460 (544)
T ss_pred chHHHHHHhcCccCCCceeccCC-CccccccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEEEEeCC
Confidence 3 444 34455555544666555 89999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeec----CC--CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCC
Q 044559 491 GYTIEVEIH----DG--PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKD 561 (585)
Q Consensus 491 ~~~~~~~~~----~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~ 561 (585)
+|++.+..+ .+ .+.++.++||.++|++||+ ++.+|++++||+++|+++++ .++|+||||.++..
T Consensus 461 ~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIeV~~~~~ 530 (544)
T PRK07064 461 GYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGL-----PHWRVTSADDFEAVLREALA--KEGPVLVEVDMLSI 530 (544)
T ss_pred hhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHc--CCCCEEEEEEcccc
Confidence 999843221 22 3456678999999999999 99999999999999999986 88999999999843
No 46
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=4.5e-85 Score=721.12 Aligned_cols=509 Identities=20% Similarity=0.235 Sum_probs=397.6
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhH
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 119 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~ 119 (585)
-.+|+++++|++.|+++||+||||+||+.+.++++++.+ ++|++|.+|||++|+|||+||+|+||+ |||++|+|||++
T Consensus 7 ~~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~ 85 (569)
T PRK09259 7 LQLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQA-EGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFL 85 (569)
T ss_pred cCCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhh-CCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHH
Confidence 356799999999999999999999999999999999864 589999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc
Q 044559 120 SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE 199 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~ 199 (585)
|+++||++|+.+++|||+|+|+.+....+.++ ..+ |..||..+|+++|||++++++++++++.|++||+.|+++
T Consensus 86 N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~---~~~---q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~ 159 (569)
T PRK09259 86 NGLTALANATTNCFPMIMISGSSEREIVDLQQ---GDY---EELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSG 159 (569)
T ss_pred HHHHHHHHHHhcCCCEEEEEccCCcccccccC---CCc---cccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhC
Confidence 99999999999999999999998765322111 122 345899999999999999999999999999999999986
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCC-CCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHH
Q 044559 200 -SKPVYISVACNLPAIPHPTFSRE-PVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELAD 277 (585)
Q Consensus 200 -~GPV~i~iP~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae 277 (585)
+|||||+||.|++..+.+..... +......+. ....+.++.+++++++|.+||||+|++|.|++++++.+++.+|||
T Consensus 160 ~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae 238 (569)
T PRK09259 160 RPGGVYLDLPAKVLAQTMDADEALTSLVKVVDPA-PAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVE 238 (569)
T ss_pred CCCcEEEEeCHHHhhCcccccccccccccccCCC-CCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHH
Confidence 79999999999987532211000 000000010 111234677999999999999999999999999899999999999
Q ss_pred HhCCceEeCCCCccccCCCCCCccccccCC-C-CCCc-----------ccccc-cccCCCccEEEEcCCcceeccCCccc
Q 044559 278 ACGYAVAVMPSAKGLVPEHHPHFIGTYWGA-V-STAF-----------FSVGY-SLLLKKEKAVILQPDRVVIANGPAFG 343 (585)
Q Consensus 278 ~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~-~-~~~~-----------~~~~~-~~~~~~~~~i~vd~d~~~i~~~~~~~ 343 (585)
++++||+||++|||+||++||+++|..... . ..+. .+.++ ..+.++.++||||.|+..++ ..+..
T Consensus 239 ~l~iPV~tt~~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~-~~~~~ 317 (569)
T PRK09259 239 KTGIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEID-SNRPI 317 (569)
T ss_pred HHCCCEEecccccccCCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhc-CCccC
Confidence 999999999999999999999999864211 0 0111 11122 22445678999999998876 22211
Q ss_pred ----cccHHHHHHHHHHHhccC----cchh-hh---hccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCC--CCCEEEec
Q 044559 344 ----CVLMKDFLKALSKRLKSN----TTAY-EN---YHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLS--SETAVIAE 409 (585)
Q Consensus 344 ----~~~~~~~l~~L~~~l~~~----~~~~-~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~--~~~iiv~d 409 (585)
..|++.+|++|.+.++.. ...| +. +++...............++++..+++.|++.++ +|.+++.|
T Consensus 318 ~~~i~~D~~~~L~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~d~iv~~~ 397 (569)
T PRK09259 318 AAPVVGDIGSVMQALLAGLKQNTFKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENPDIYLVNE 397 (569)
T ss_pred ceeEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCCCCCEEEEeC
Confidence 238999999999887532 1122 11 1111100000000112346999999999999995 47788888
Q ss_pred CCccccccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEe
Q 044559 410 TGDSWFNCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLIN 488 (585)
Q Consensus 410 ~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~N 488 (585)
+|++..|.. ++....+.+++.++++|+|||++|+|||+++| ++++||+++|||||+|+++||+|++||++|+++||+|
T Consensus 398 ~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-~~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~vV~N 476 (569)
T PRK09259 398 GANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-TGKPVVAIEGDSAFGFSGMEVETICRYNLPVTVVIFN 476 (569)
T ss_pred chHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-CCCcEEEEecCccccccHHHHHHHHHcCCCEEEEEEe
Confidence 777765543 34444445588888999999999999999999 6999999999999999999999999999999999999
Q ss_pred CCccee--eeeecC-CCc--CCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCC
Q 044559 489 NGGYTI--EVEIHD-GPY--NVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDD 562 (585)
Q Consensus 489 N~~~~~--~~~~~~-~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
|++|.. ++..+. ..+ .++ +++||.++|++||+ ++++|++.+||+++|++++. .++|+||||.+++++
T Consensus 477 N~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIev~id~~~ 549 (569)
T PRK09259 477 NGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAFGG-----VGYNVTTPDELRHALTEAIA--SGKPTLINVVIDPAA 549 (569)
T ss_pred ChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEECCCC
Confidence 999722 211111 111 233 57999999999999 99999999999999999986 889999999999887
Q ss_pred ChHH
Q 044559 563 TSKE 566 (585)
Q Consensus 563 ~~~~ 566 (585)
.++.
T Consensus 550 ~~~~ 553 (569)
T PRK09259 550 GTES 553 (569)
T ss_pred CCCc
Confidence 6643
No 47
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-85 Score=717.39 Aligned_cols=497 Identities=22% Similarity=0.276 Sum_probs=398.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-PGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
+||++++|++.|+++||++|||+||+++++|+++|.+. ++|++|.++||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N 82 (542)
T PRK08266 3 TMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLN 82 (542)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 48999999999999999999999999999999999764 579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++||++||.+++|||+|+|+.+....+++.. +.++..||.++|+++|||+.++.+++++++.+++|++.|+++
T Consensus 83 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~-----~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 157 (542)
T PRK08266 83 AGAALLTAYGCNSPVLCLTGQIPSALIGKGRG-----HLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGR 157 (542)
T ss_pred HHHHHHHHHhhCCCEEEEecCCChhhccCCCC-----cceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998876555421 112345899999999999999999999999999999999986
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+.+.. ..+..... ....++.+.+++++++|.+||||+|++|.|+. ++.++|.+|+|++
T Consensus 158 ~GPV~l~iP~dv~~~~~~~~---~~~~~~~~--~~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~~ 230 (542)
T PRK08266 158 PRPVALEMPWDVFGQRAPVA---AAPPLRPA--PPPAPDPDAIAAAAALIAAAKNPMIFVGGGAA--GAGEEIRELAEML 230 (542)
T ss_pred CCcEEEEeCHhHhhCccccc---ccccccCC--CCCCCCHHHHHHHHHHHHhCCCCEEEECCChh--hHHHHHHHHHHHH
Confidence 79999999999976432211 00100000 11123456789999999999999999999963 6899999999999
Q ss_pred CCceEeCCCCccccCCCCCCccccccCC--C-CCCc----------ccccccccCCCccEEEEcCCcceeccCCcccc--
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGA--V-STAF----------FSVGYSLLLKKEKAVILQPDRVVIANGPAFGC-- 344 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~--~-~~~~----------~~~~~~~~~~~~~~i~vd~d~~~i~~~~~~~~-- 344 (585)
|+||++|++|||+||++||+++|..... . ..+. .+..|..+.+..++||||.|+..++ . +..+
T Consensus 231 g~pv~tt~~~kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~-~~~~~~ 308 (542)
T PRK08266 231 QAPVVAFRSGRGIVSDRHPLGLNFAAAYELWPQTDVVIGIGSRLELPTFRWPWRPDGLKVIRIDIDPTEMR-R-LKPDVA 308 (542)
T ss_pred CCCEEEeccccccCCCCCccccCCHHHHHHHHhCCEEEEeCCCcCcccccccccCCCCcEEEEECCHHHhC-C-cCCCce
Confidence 9999999999999999999999854110 0 0010 1112333344568999999999886 3 3222
Q ss_pred --ccHHHHHHHHHHHhccC---cchh-hhhccccCCCCCCCCCCCCCCcCHH-HHHHHHHhhCCCCCEEEecCCcccccc
Q 044559 345 --VLMKDFLKALSKRLKSN---TTAY-ENYHRIYVPEGQPPKCEPKEPLRVN-VLFQHIQKMLSSETAVIAETGDSWFNC 417 (585)
Q Consensus 345 --~~~~~~l~~L~~~l~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~~l~~~~iiv~d~G~~~~~~ 417 (585)
.|++.+|++|.+.++.. ...| ..+...+.. ... .. ..++++ .+++.|++.+|++++++.|+|++.+|.
T Consensus 309 i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~---~~~~~~~~~~~~l~~~lp~d~ivv~d~g~~~~~~ 383 (542)
T PRK08266 309 IVADAKAGTAALLDALSKAGSKRPSRRAELRELKAA-ARQ-RI---QAVQPQASYLRAIREALPDDGIFVDELSQVGFAS 383 (542)
T ss_pred EecCHHHHHHHHHHhhhhcccCchHHHHHHHHHHHh-hhh-cc---ccCCHHHHHHHHHHHhcCCCcEEEeCCcHHHHHH
Confidence 47899999999887542 1112 111111100 000 00 125665 479999999999999999999987765
Q ss_pred c-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeee
Q 044559 418 Q-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEV 496 (585)
Q Consensus 418 ~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~ 496 (585)
. ++....+.+++.++++|+|||++|+|+|+++++|+++|++++|||||+|+++||+|++||++|+++||+||++|++.+
T Consensus 384 ~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~ivv~NN~~y~~~~ 463 (542)
T PRK08266 384 WFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTVVFNNNAYGNVR 463 (542)
T ss_pred HHhcccCCCCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCCcchHHH
Confidence 4 345555566888889999999999999999999999999999999999999999999999999999999999999832
Q ss_pred e----ecCCCc--CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChH
Q 044559 497 E----IHDGPY--NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSK 565 (585)
Q Consensus 497 ~----~~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
. .+++.+ .++.++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.|++.+...
T Consensus 464 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~liev~i~~~~~~~ 531 (542)
T PRK08266 464 RDQKRRFGGRVVASDLVNPDFVKLAESFGV-----AAFRVDSPEELRAALEAALA--HGGPVLIEVPVPRGSEAS 531 (542)
T ss_pred HHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCcEEEEEEecCCCCcc
Confidence 1 122322 44567899999999999 99999999999999999986 789999999999876553
No 48
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=8.3e-84 Score=712.86 Aligned_cols=508 Identities=21% Similarity=0.245 Sum_probs=402.8
Q ss_pred ccCCCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCCh
Q 044559 38 LVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTV 116 (585)
Q Consensus 38 ~~~~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGp 116 (585)
+-.+..++++++|++.|+++||++|||+|+.. .+++++.+ ++|++|.+|||++|+|||+||||+||+ +||++|+||
T Consensus 8 ~~~~~~~~~a~~i~~~L~~~GV~~vFG~~~~~--~~~~~~~~-~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~Gp 84 (578)
T PRK06112 8 PGFTLNGTVAHAIARALKRHGVEQIFGQSLPS--ALFLAAEA-IGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGP 84 (578)
T ss_pred CCCccCcCHHHHHHHHHHHCCCCEEeecccch--HhHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 34456789999999999999999999998653 34566653 579999999999999999999999999 999999999
Q ss_pred hhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHh
Q 044559 117 GGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTA 196 (585)
Q Consensus 117 G~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a 196 (585)
|++|+++||++||.+++|||+|+|+.+....+++ .+ |..||.++|+++|||++++.+++++++.+++|++.|
T Consensus 85 G~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A 156 (578)
T PRK06112 85 AATLLVAPLAEALKASVPIVALVQDVNRDQTDRN-----AF---QELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAA 156 (578)
T ss_pred cHHHHHHHHHHHhhcCCCEEEEecCCccccCCCC-----Cc---cccChhhhhccccceEEEeCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998766554 22 346899999999999999999999999999999999
Q ss_pred hhc-CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCC-CChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHH
Q 044559 197 LKE-SKPVYISVACNLPAIPHPTFSREPVPFSLSPKL-SNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVE 274 (585)
Q Consensus 197 ~~~-~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~ 274 (585)
+++ +|||||+||.|++..+.+... .+.+....... ....+++..+++++++|.+||||+|++|.|+.++++.++|.+
T Consensus 157 ~~~~~GPv~l~iP~Dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~ 235 (578)
T PRK06112 157 TSGRPGPVVLLLPADLLTAAAAAPA-APRSNSLGHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAA 235 (578)
T ss_pred hhCCCCcEEEEcCHhHhhCcccccc-CcccccccCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHH
Confidence 997 699999999999864321110 01000000000 011235667899999999999999999999998899999999
Q ss_pred HHHHhCCceEeCCCCccccCCCCCCccccccCCCC-------CCc------------------ccccccccCCCccEEEE
Q 044559 275 LADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVS-------TAF------------------FSVGYSLLLKKEKAVIL 329 (585)
Q Consensus 275 lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~-------~~~------------------~~~~~~~~~~~~~~i~v 329 (585)
|+|++|+||++|++|||+||++||+++|.+....+ ... .+.+|..+.++.++|||
T Consensus 236 lae~lg~pV~~t~~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~i 315 (578)
T PRK06112 236 LQSLAGLPVATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSWSLYPEQAQYIHI 315 (578)
T ss_pred HHHHhCCCEEEcccccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECCCCCccccccccccCCCCeEEEE
Confidence 99999999999999999999999999997632111 000 12234444456789999
Q ss_pred cCCcceeccCCcc---ccccHHHHHHHHHHHhccCc--------chh-hhhccc---cCCCCCCCCCCCCCCcCHHHHHH
Q 044559 330 QPDRVVIANGPAF---GCVLMKDFLKALSKRLKSNT--------TAY-ENYHRI---YVPEGQPPKCEPKEPLRVNVLFQ 394 (585)
Q Consensus 330 d~d~~~i~~~~~~---~~~~~~~~l~~L~~~l~~~~--------~~~-~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~ 394 (585)
|.|+..++ ..+. -..|++.+|++|.+.+...+ ..| ..+.+. ..............++++.++++
T Consensus 316 d~d~~~~~-~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~ 394 (578)
T PRK06112 316 DVDGEEVG-RNYEALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPIRPERIMA 394 (578)
T ss_pred ECChHHhC-ccccceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCcCHHHHHH
Confidence 99998886 2211 12388999999988764321 111 111110 00000000111234699999999
Q ss_pred HHHhhCCCCCEEEecCCccccccc-cccccC-CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHH
Q 044559 395 HIQKMLSSETAVIAETGDSWFNCQ-KLKLPK-GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDV 472 (585)
Q Consensus 395 ~l~~~l~~~~iiv~d~G~~~~~~~-~~~~~~-~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL 472 (585)
.|++.++++++++.|+|++..|.. ++.... ..+|+.+.++|+|||++|+|+|+++|+|+++||+++|||||+|+++||
T Consensus 395 ~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~~~el 474 (578)
T PRK06112 395 ELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAEL 474 (578)
T ss_pred HHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHhHHHHH
Confidence 999999999999999998876653 344433 335888899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceEEEEEeCCcceeeeeec----CC--CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCC
Q 044559 473 STMLRCGQKTIIFLINNGGYTIEVEIH----DG--PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGP 546 (585)
Q Consensus 473 ~ta~~~~lpv~ivV~NN~~~~~~~~~~----~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~ 546 (585)
+|+++|++|+++||+||++|++.+... .+ .+.++.++||.++|++||+ ++++|++.+||+++|+++++
T Consensus 475 ~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~el~~al~~a~~- 548 (578)
T PRK06112 475 ETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGC-----DGVRVEDPAELAQALAAAMA- 548 (578)
T ss_pred HHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh-
Confidence 999999999999999999999854221 12 1234567999999999999 99999999999999999986
Q ss_pred CCCCeEEEEEEcCCCCChH
Q 044559 547 KKDCLCFIEVLVHKDDTSK 565 (585)
Q Consensus 547 ~~~gp~vIeV~v~~~~~~~ 565 (585)
.+||.||||++++++.++
T Consensus 549 -~~gp~lIev~~~~~~~p~ 566 (578)
T PRK06112 549 -APGPTLIEVITDPSAFPP 566 (578)
T ss_pred -CCCCEEEEEEcCcccCCC
Confidence 789999999999998886
No 49
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-84 Score=705.55 Aligned_cols=477 Identities=17% Similarity=0.148 Sum_probs=377.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
.+||++++|++.|+++||+||||+||+++++|++++.+.++|++|.+|||++|+||||||||+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N 82 (518)
T PRK12474 3 QTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLAN 82 (518)
T ss_pred cCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhH
Confidence 568999999999999999999999999999999999765689999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++||++||.+++|||+|+|+.+....+.+. + +..||..+++++|||+.++.+++++++.|+||++.|+++
T Consensus 83 ~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~-----~---q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~ 154 (518)
T PRK12474 83 GLANLHNARRAASPIVNIVGDHAVEHLQYDA-----P---LTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAP 154 (518)
T ss_pred hHHHHHHHhhcCCCEEEEeccCchhhcCCCC-----c---cccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998876554431 1 234889999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+.+. ...+.+. .. . ..++++.+++++++|.+||||+|++|.|+.++++.+++++|||++
T Consensus 155 ~GPV~l~iP~Dv~~~~~~~-~~~~~~~-~~---~-~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~ 228 (518)
T PRK12474 155 GGIATLIMPADVAWNEAAY-AAQPLRG-IG---P-APVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKT 228 (518)
T ss_pred CCcEEEEechhhhcccccC-CcCCCCC-CC---C-CCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHH
Confidence 6999999999997643211 1001110 01 1 123466899999999999999999999999889999999999999
Q ss_pred CCceEeC------CCCccccCC-CCCCccccccCC-CCCCc-cccc----ccc----------cCCCccEEEEcCCccee
Q 044559 280 GYAVAVM------PSAKGLVPE-HHPHFIGTYWGA-VSTAF-FSVG----YSL----------LLKKEKAVILQPDRVVI 336 (585)
Q Consensus 280 ~~Pv~tt------~~gkg~~~~-~hp~~~g~~~g~-~~~~~-~~~~----~~~----------~~~~~~~i~vd~d~~~i 336 (585)
|+||++| ++|||+||+ +||++.+...-. ...+. ...| +.. +.+..++++++.
T Consensus 229 g~PV~~t~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----- 303 (518)
T PRK12474 229 GVRLYCDTFAPRIERGAGRVPIERIPYFHEQITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQ----- 303 (518)
T ss_pred CCCEEEecCcccccCCCCCCCCcccccchHHHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECC-----
Confidence 9999975 469999995 667764321000 00010 0111 110 112233444432
Q ss_pred ccCCccccccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccc
Q 044559 337 ANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFN 416 (585)
Q Consensus 337 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~ 416 (585)
.+.|++.+|++|.+.++........+ ... .......++++.++++.|++.++++++++.|+|++..|
T Consensus 304 ------~~~d~~~~l~~L~~~l~~~~~~~~~~-----~~~--~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~ 370 (518)
T PRK12474 304 ------PDEDLAQALQDLADAVDAPAEPAART-----PLA--LPALPKGALNSLGVAQLIAHRTPDQAIYADEALTSGLF 370 (518)
T ss_pred ------CCcCHHHHHHHHHHhccccccccccc-----ccc--ccCCCCCCcCHHHHHHHHHHHCCCCeEEEECCCcCHHH
Confidence 23578999999988765321110000 000 00112346999999999999999999999999998776
Q ss_pred cc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 417 CQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 417 ~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
.. +++...+.+++.+. +|+|||++|+|||+++|+|+|+||+++|||||+|++|||+|++||++|+++||+||++|++.
T Consensus 371 ~~~~~~~~~p~~~~~~~-~gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i 449 (518)
T PRK12474 371 FDMSYDRARPHTHLPLT-GGSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVTVVIFANRSYAIL 449 (518)
T ss_pred HHHhhcccCCCCEEccC-CCccCccHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHHHCCCcEEEEEcCCcchHH
Confidence 53 34444455577664 49999999999999999999999999999999999999999999999999999999999984
Q ss_pred ee---ec----CC----CcCCC--CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEc
Q 044559 496 VE---IH----DG----PYNVI--KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLV 558 (585)
Q Consensus 496 ~~---~~----~~----~~~~~--~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v 558 (585)
++ .+ .+ .+.++ +++||.++|++||+ ++++|++++||.++|+++++ .++|+||||.+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~rv~~~~eL~~al~~a~~--~~~p~liev~~ 518 (518)
T PRK12474 450 NGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGV-----EASRATTAEEFSAQYAAAMA--QRGPRLIEAMI 518 (518)
T ss_pred HHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHc--CCCCEEEEEEC
Confidence 32 11 11 12333 35899999999999 99999999999999999986 89999999975
No 50
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=7.2e-84 Score=704.72 Aligned_cols=482 Identities=21% Similarity=0.179 Sum_probs=379.3
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
|+++++|++.|+++||+||||+||+++++|++++.+.++|++|.+|||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 6899999999999999999999999999999999765689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-CC
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-SK 201 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~G 201 (585)
+||++||.+++|||+|+|+.+....+.+. .|..||.++|+++|||+.++++++++++.|++|++.|+++ +|
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~--------~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~G 152 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDA--------PLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQ 152 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCc--------ccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999998887555432 2345889999999999999999999999999999999997 79
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCC
Q 044559 202 PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281 (585)
Q Consensus 202 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~ 281 (585)
||||+||.|++..+.+ .... ..... ....++++.+++++++|.+||||+|++|.|+.++++.+++.+|||++|+
T Consensus 153 PV~l~iP~Dv~~~~~~--~~~~-~~~~~---~~~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~ 226 (514)
T PRK07586 153 VATLILPADVAWSEGG--PPAP-PPPAP---APAAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGA 226 (514)
T ss_pred cEEEEeccchhccccc--cccc-cCCCC---CCCCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCC
Confidence 9999999999864321 1111 10101 1112456789999999999999999999999999999999999999999
Q ss_pred ceEeCC------CCccccCCCCCCccccccCC--CCCCc-cccc------cccc-CCCccEEEEcCCcceeccCCccccc
Q 044559 282 AVAVMP------SAKGLVPEHHPHFIGTYWGA--VSTAF-FSVG------YSLL-LKKEKAVILQPDRVVIANGPAFGCV 345 (585)
Q Consensus 282 Pv~tt~------~gkg~~~~~hp~~~g~~~g~--~~~~~-~~~~------~~~~-~~~~~~i~vd~d~~~i~~~~~~~~~ 345 (585)
||+|+. +|||+||++|+.+.+..... ...+. ...| |..+ ....++++.+.+..++. ....
T Consensus 227 pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 302 (514)
T PRK07586 227 RLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGAKAPVAFFAYPGKPSRLVPEGCEVHTLA----GPGE 302 (514)
T ss_pred CEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECCCCcccccccCCCccccCCCCceEEEEC----CCcc
Confidence 999864 59999998887665422100 00111 0111 1101 11112222222222221 1235
Q ss_pred cHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccc-cccccC
Q 044559 346 LMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQ-KLKLPK 424 (585)
Q Consensus 346 ~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~-~~~~~~ 424 (585)
|++.+|++|.+.++...... ..... . .......++++.++++.|++.+|++++++.|+|++.+|.. ++...+
T Consensus 303 d~~~~l~~L~~~l~~~~~~~-~~~~~--~----~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~ 375 (514)
T PRK07586 303 DAAAALEALADALGAKPAAP-PLAAP--A----RPPLPTGALTPEAIAQVIAALLPENAIVVDESITSGRGFFPATAGAA 375 (514)
T ss_pred cHHHHHHHHHHhhcccccch-hhhhc--c----ccCCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccC
Confidence 88999999988775321110 11000 0 0111234699999999999999999999999999877754 344445
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeee---c-C
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI---H-D 500 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~---~-~ 500 (585)
+.+|+.+.+ |+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||++|+++||+||++|++.+.. + .
T Consensus 376 ~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~ 454 (514)
T PRK07586 376 PHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIFANRAYAILRGELARVGA 454 (514)
T ss_pred CCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcC
Confidence 555776665 9999999999999999999999999999999999999999999999999999999999984321 1 1
Q ss_pred ---C----CcCCC--CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEc
Q 044559 501 ---G----PYNVI--KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLV 558 (585)
Q Consensus 501 ---~----~~~~~--~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v 558 (585)
+ .+.++ +++||.++|++||+ ++++|++++||.++|+++++ .++|+||||.+
T Consensus 455 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~el~~al~~a~~--~~~p~liev~~ 514 (514)
T PRK07586 455 GNPGPRALDMLDLDDPDLDWVALAEGMGV-----PARRVTTAEEFADALAAALA--EPGPHLIEAVV 514 (514)
T ss_pred CCCCccccccccCCCCCCCHHHHHHHCCC-----cEEEeCCHHHHHHHHHHHHc--CCCCEEEEEEC
Confidence 1 12333 46899999999999 99999999999999999996 78999999985
No 51
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=2.1e-83 Score=706.63 Aligned_cols=506 Identities=20% Similarity=0.250 Sum_probs=395.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-----CCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCC
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEP-----GLNLIGCCNELNAGYAADGYARSRGV-GACVVTFT 115 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-----~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsG 115 (585)
.+++++++|++.|+++||+||||+||+++++|++++.+++ +|++|.+|||++|+||||||||+||+ +||++|+|
T Consensus 5 ~~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~G 84 (569)
T PRK08327 5 TMYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVD 84 (569)
T ss_pred ccccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 3479999999999999999999999999999999997532 39999999999999999999999999 99999999
Q ss_pred hhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCcc---ccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHH
Q 044559 116 VGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNR---ILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTA 192 (585)
Q Consensus 116 pG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~---~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A 192 (585)
||++|+++||++||.+++|||+|+|+.+....+++. ..++.++ +..||..+|+++|||+.++++++++.+.|++|
T Consensus 85 PG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~q--e~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A 162 (569)
T PRK08327 85 VGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQ--EMRDQGGLVREYVKWDYEIRRGDQIGEVVARA 162 (569)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccch--hhhhHHHHHhhhhhhhcccCCHHHHHHHHHHH
Confidence 999999999999999999999999998877554321 1112232 23589999999999999999999999999999
Q ss_pred HHHhhhc-CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHH
Q 044559 193 VSTALKE-SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNA 271 (585)
Q Consensus 193 ~~~a~~~-~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~ 271 (585)
++.|.++ +|||||+||.|++..+.+.... +.+..... ....++++.+++++++|++||||+|++|.|+.++++.++
T Consensus 163 ~~~a~~~~~GPV~i~iP~Dv~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~ 239 (569)
T PRK08327 163 IQIAMSEPKGPVYLTLPREVLAEEVPEVKA-DAGRQMAP--APPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFAS 239 (569)
T ss_pred HHHHhcCCCCCEEEECcHHHHhhhcccccc-CccccCCC--CCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHH
Confidence 9999986 7999999999998643221100 00000111 111245678999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEeCCCCccccCCCCCCccccccCCCC--CCc-----cccccc----ccCCCccEEEEcCCcceecc--
Q 044559 272 FVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVS--TAF-----FSVGYS----LLLKKEKAVILQPDRVVIAN-- 338 (585)
Q Consensus 272 l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~--~~~-----~~~~~~----~~~~~~~~i~vd~d~~~i~~-- 338 (585)
|.+|||++++||+||++|||.||++||+++|.+..... .+. ..+++. .+.++.++||||.|+.+++.
T Consensus 240 l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~vi~Id~d~~~~~~~~ 319 (569)
T PRK08327 240 LRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPDPRADLAEADLVLVVDSDVPWIPKKIRPDADARVIQIDVDPLKSRIPL 319 (569)
T ss_pred HHHHHHHhCCCEEecCCCceeCCCCCccccccccchhhhhCCEEEEeCCCCCCccccccCCCCCeEEEEeCChhhhcccc
Confidence 99999999999999999999999999999996521111 111 111221 12345689999999987751
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCcc-----------hhhhhccccCCCCCC--CCCCCCCCcCHHHHHHHHHhhCC
Q 044559 339 GPAFGC----VLMKDFLKALSKRLKSNTT-----------AYENYHRIYVPEGQP--PKCEPKEPLRVNVLFQHIQKMLS 401 (585)
Q Consensus 339 ~~~~~~----~~~~~~l~~L~~~l~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~~~l~ 401 (585)
..+..+ .|++.+|++|.+.+..... .|..+.......... .....+.++++.++++.|++.++
T Consensus 320 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~ 399 (569)
T PRK08327 320 WGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYLSYCLGEVAD 399 (569)
T ss_pred cCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhhccCCCCCcCHHHHHHHHHHhcC
Confidence 121112 3899999999987754211 121111110000000 01123357999999999999999
Q ss_pred CCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHH--HHHHHHhC
Q 044559 402 SETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQD--VSTMLRCG 479 (585)
Q Consensus 402 ~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~e--L~ta~~~~ 479 (585)
++++++.|.+ +...+++.+++.+|+.+.++|+|||++|+|+|+++|+|+++||+++|||||+|+++| |+|++||+
T Consensus 400 ~~~~vv~~~~---~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~ 476 (569)
T PRK08327 400 EYDAIVTEYP---FVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHWVAERYG 476 (569)
T ss_pred ccceEEeccH---HHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcHHHHHHHHHhC
Confidence 9888886643 223445566666799999999999999999999999999999999999999999876 89999999
Q ss_pred CceEEEEEeCCcceeeee----ecC-C------C--cCCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC
Q 044559 480 QKTIIFLINNGGYTIEVE----IHD-G------P--YNVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG 545 (585)
Q Consensus 480 lpv~ivV~NN~~~~~~~~----~~~-~------~--~~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~ 545 (585)
+|+++||+||++|++.+. ++. + . ...+ +++||.++|++||+ ++++|++.+||.++|+++++
T Consensus 477 l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~ 551 (569)
T PRK08327 477 LPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGG-----YGERVEDPEELKGALRRALA 551 (569)
T ss_pred CCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCC-----CceEeCCHHHHHHHHHHHHH
Confidence 999999999999998432 121 1 1 2234 67999999999999 89999999999999999985
Q ss_pred --CCCCCeEEEEEEcCC
Q 044559 546 --PKKDCLCFIEVLVHK 560 (585)
Q Consensus 546 --~~~~gp~vIeV~v~~ 560 (585)
.+.+||+||||.+++
T Consensus 552 ~~~~~~gp~liev~v~~ 568 (569)
T PRK08327 552 AVRKGRRSAVLDVIVDR 568 (569)
T ss_pred HHhcCCCcEEEEEEccC
Confidence 112789999999975
No 52
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=4.9e-83 Score=637.38 Aligned_cols=509 Identities=21% Similarity=0.267 Sum_probs=412.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhh
Q 044559 40 NPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGG 118 (585)
Q Consensus 40 ~~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~ 118 (585)
..+.+++++.+++.|+.+||+||||+-|.++.+|..++++. |||||.+|||++|+|+|++|++.||+ |||++++|||.
T Consensus 10 ~~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqal-GIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl 88 (571)
T KOG1185|consen 10 KASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQAL-GIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGPGL 88 (571)
T ss_pred ccccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHc-CCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCChH
Confidence 35668999999999999999999999999999999999875 89999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhh
Q 044559 119 LSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK 198 (585)
Q Consensus 119 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~ 198 (585)
+|+++|++||+.+++|||+|.|..++.+.+++. + |..||+++++|+||++.+++++++++..+++|++.|++
T Consensus 89 ~hal~gv~NA~~n~wPll~IgGsa~~~~~~rGa-----f---Qe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~ 160 (571)
T KOG1185|consen 89 THALAGVANAQMNCWPLLLIGGSASTLLENRGA-----F---QELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMS 160 (571)
T ss_pred HHHHHHhhhhhhccCcEEEEecccchhhhcccc-----c---ccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhc
Confidence 999999999999999999999999998877763 2 45699999999999999999999999999999999999
Q ss_pred c-CCcEEEEecCCCCCCCCCCCCC----CCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHH
Q 044559 199 E-SKPVYISVACNLPAIPHPTFSR----EPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFV 273 (585)
Q Consensus 199 ~-~GPV~i~iP~dv~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~ 273 (585)
+ |||||+++|.|+.......... .+.+....|. .+.+++.++++++++|++||||++++|.|+.++.+.++|+
T Consensus 161 G~PG~~yvD~P~d~v~~~~~~e~~~~~~~p~~~~p~P~--i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~ 238 (571)
T KOG1185|consen 161 GRPGPVYVDLPADVVLPSKMVEKEIDVSEPQPPIPLPP--IPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLR 238 (571)
T ss_pred CCCCceEEecccceeeeecccccccccCCCCCCCCCCC--CCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHH
Confidence 7 8999999999964421111110 1111111111 2245677899999999999999999999999988999999
Q ss_pred HHHHHhCCceEeCCCCccccCCCCCCccccccCCCCCCc-------ccccc----c---ccCCCccEEEEcCCcceeccC
Q 044559 274 ELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF-------FSVGY----S---LLLKKEKAVILQPDRVVIANG 339 (585)
Q Consensus 274 ~lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~-------~~~~~----~---~~~~~~~~i~vd~d~~~i~~~ 339 (585)
+|.|.+|+|++.|+||||++|++||++++..+...-... ..++| + .|.++.|+|+||+++++++++
T Consensus 239 ~~Ve~~glPflptpMgKGll~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n 318 (571)
T KOG1185|consen 239 KFVETTGLPFLPTPMGKGLLPDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNN 318 (571)
T ss_pred HHHHhcCCCcccCcccccCCCCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcc
Confidence 999999999999999999999999999886531111100 22233 2 355788999999999999833
Q ss_pred Ccccc----ccHHHHHHHHHHHhccCcchh----hhhccccCC---C---CCCCCCCCCCCcCHHHHHHHHHhhCC-CCC
Q 044559 340 PAFGC----VLMKDFLKALSKRLKSNTTAY----ENYHRIYVP---E---GQPPKCEPKEPLRVNVLFQHIQKMLS-SET 404 (585)
Q Consensus 340 ~~~~~----~~~~~~l~~L~~~l~~~~~~~----~~~~~~~~~---~---~~~~~~~~~~~i~~~~~~~~l~~~l~-~~~ 404 (585)
..-++ .|++.++.+|.+.+...+..| ++|+.++++ . ..+.......++++..+++.+++.|| +|.
T Consensus 319 ~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L~~~d~ 398 (571)
T KOG1185|consen 319 FVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELLPNDDT 398 (571)
T ss_pred cCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhcCCCCc
Confidence 12222 389999999999998754321 112222110 0 01112334557999999999999999 889
Q ss_pred EEEecCCcccc-ccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceE
Q 044559 405 AVIAETGDSWF-NCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTI 483 (585)
Q Consensus 405 iiv~d~G~~~~-~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ 483 (585)
|+|+|.++.+- ....+....+++++..+.||+||.|+++|||+|++.|+++|+|+.||++|.|+.+|++|++||+||++
T Consensus 399 ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~vR~~Lpvv 478 (571)
T KOG1185|consen 399 ILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFVRYKLPVV 478 (571)
T ss_pred EEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHHHhcCCeE
Confidence 99999998863 33334333445589999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCC-cceee----eeecCC-------CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCe
Q 044559 484 IFLINNG-GYTIE----VEIHDG-------PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCL 551 (585)
Q Consensus 484 ivV~NN~-~~~~~----~~~~~~-------~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp 551 (585)
+||+||+ -||.. .++..+ +...+.+.+|++++++||. +++.|++++||..+++++.+ .+++|
T Consensus 479 ~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~-----kG~~v~t~~el~~~l~~a~q-~~~~p 552 (571)
T KOG1185|consen 479 IVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGG-----KGYFVSTVEELLAALQQACQ-DTDKP 552 (571)
T ss_pred EEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCC-----CceeeCCHHHHHHHHHHHHh-cCCCC
Confidence 9999664 46651 122111 1123478999999999999 99999999999999999985 56699
Q ss_pred EEEEEEcCCCCChH
Q 044559 552 CFIEVLVHKDDTSK 565 (585)
Q Consensus 552 ~vIeV~v~~~~~~~ 565 (585)
+||+|.|++.+..+
T Consensus 553 svINVlI~p~~~rk 566 (571)
T KOG1185|consen 553 SVINVLIGPTAFRK 566 (571)
T ss_pred eEEEEEeccccccc
Confidence 99999999987653
No 53
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=1.9e-82 Score=695.04 Aligned_cols=487 Identities=23% Similarity=0.261 Sum_probs=394.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
++|++++|++.|+++||+||||+||+++++|++++.+ +|++|.+|||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~--~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~ 88 (530)
T PRK07092 11 MTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD--DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNA 88 (530)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh--cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHH
Confidence 3899999999999999999999999999999999963 69999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++||.+++|||+|+|+.+....+++.+. +..||.++|+++|||+.++++++++++.+++|++.|+++ +
T Consensus 89 ~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-------~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 161 (530)
T PRK07092 89 MGNLFTAFKNHTPLVITAGQQARSILPFEPFL-------AAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPR 161 (530)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCccchh-------cccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988766554311 234788999999999999999999999999999999987 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++..+ .... ...... ....++++.+++++++|.+||||+|++|.|++++++.++|++|+|++|
T Consensus 162 GPv~l~iP~d~~~~~--~~~~--~~~~~~---~~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg 234 (530)
T PRK07092 162 GPVFVSIPYDDWDQP--AEPL--PARTVS---SAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHR 234 (530)
T ss_pred CcEEEEccHHHhhCc--cccc--ccCCCC---CCCCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHC
Confidence 999999999997643 2111 110011 111235667999999999999999999999998889999999999999
Q ss_pred CceEeCCC-CccccCCCCCCccccccCCCC--------CCc-----------cccccc-ccCCCccEEEEcCCcceeccC
Q 044559 281 YAVAVMPS-AKGLVPEHHPHFIGTYWGAVS--------TAF-----------FSVGYS-LLLKKEKAVILQPDRVVIANG 339 (585)
Q Consensus 281 ~Pv~tt~~-gkg~~~~~hp~~~g~~~g~~~--------~~~-----------~~~~~~-~~~~~~~~i~vd~d~~~i~~~ 339 (585)
+||++|++ +||+||++||+++|.+.+... .+. .+.+|. .+.++.++||||.|+..++ .
T Consensus 235 ~pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~ 313 (530)
T PRK07092 235 APVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAA-W 313 (530)
T ss_pred CcEEEecCCCcCcCCCCCccccCcCCccHHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhc-C
Confidence 99999876 799999999999997632110 000 011121 2334678999999998775 2
Q ss_pred Cccc---cccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccc
Q 044559 340 PAFG---CVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFN 416 (585)
Q Consensus 340 ~~~~---~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~ 416 (585)
.... ..|++.+|++|.+.++........+++. .. .......++++..+++.|++.++++++++.|+|++..|
T Consensus 314 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~ 388 (530)
T PRK07092 314 APMGDAIVGDIRLALRDLLALLPPSARPAPPARPM--PP---PAPAPGEPLSVAFVLQTLAALRPADAIVVEEAPSTRPA 388 (530)
T ss_pred CCCCCcccCCHHHHHHHHHHhhccccccchhhhhc--cc---cccCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCccHHH
Confidence 2211 2388999999998876432111011110 00 01112356899999999999999999999999988766
Q ss_pred cc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 417 CQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 417 ~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
.. ++....+.+|+.+ .+|+|||++|+|+|++++.|+++|++++|||+|+|+++||+|+++|++|+++||+||++|++.
T Consensus 389 ~~~~~~~~~~~~~~~~-~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lp~~~vv~NN~~~~~~ 467 (530)
T PRK07092 389 MQEHLPMRRQGSFYTM-ASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNNGRYGAL 467 (530)
T ss_pred HHHhcCcCCCCceEcc-CCCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHHhCCCcEEEEEeChHHHHH
Confidence 43 4555555557754 469999999999999999999999999999999999999999999999999999999999983
Q ss_pred eeec-----CC-CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcC
Q 044559 496 VEIH-----DG-PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVH 559 (585)
Q Consensus 496 ~~~~-----~~-~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~ 559 (585)
+..+ +. .+.++.++||.++|++||+ ++++|++.+||.++|+++++ .++|+||||.+|
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~-----~~~~v~~~~~l~~al~~a~~--~~~p~liev~~d 530 (530)
T PRK07092 468 RWFAPVFGVRDVPGLDLPGLDFVALARGYGC-----EAVRVSDAAELADALARALA--ADGPVLVEVEVA 530 (530)
T ss_pred HHHHHhhCCCCCCCCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEcC
Confidence 3211 11 2345578999999999999 99999999999999999986 889999999986
No 54
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=8e-82 Score=696.71 Aligned_cols=509 Identities=17% Similarity=0.149 Sum_probs=389.4
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
++++++|++.|+++||++|||+||+++.+|++++.++++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l 88 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLY 88 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhh
Confidence 8999999999999999999999999999999999765689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCCh--hhHHHHHHHHHHH---hh
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNL--EDAHELIDTAVST---AL 197 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~--~~~~~~l~~A~~~---a~ 197 (585)
+||++||.+++|||+|+|+.+....+++. .|..||.++++++|+++.++.+. +.++..+.++++. |.
T Consensus 89 ~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~--------~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~ 160 (568)
T PRK07449 89 PAVIEAGLTGVPLIVLTADRPPELRDCGA--------NQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQ 160 (568)
T ss_pred HHHHHHhhcCCcEEEEECCCCHHHhcCCC--------CceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887655542 24568999999999877766544 2344444444444 65
Q ss_pred hc-CCcEEEEecCCCCCCCCC-CCCCCC--CCCcC--CC-CCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHH
Q 044559 198 KE-SKPVYISVACNLPAIPHP-TFSREP--VPFSL--SP-KLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACN 270 (585)
Q Consensus 198 ~~-~GPV~i~iP~dv~~~~~~-~~~~~~--~~~~~--~~-~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~ 270 (585)
++ +|||||+||.|++..+.. .....+ .+... .+ ......+++..+++++++|.+ |||+|++|.|+.+ +.+
T Consensus 161 ~~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~--~~~ 237 (568)
T PRK07449 161 TLQAGPVHINCPFREPLYPDDDDDTGSPWLAPLGDWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAE--EGQ 237 (568)
T ss_pred CCCCCCEEEeCCCCCCCCCCCcccccccccccccccccccccccccCccccchhhhhhhcc-CCeEEEECCCChH--HHH
Confidence 55 799999999998643211 000000 01000 00 000012334568899999998 9999999999985 349
Q ss_pred HHHHHHHHhCCceEeCCCCccccCCCCCCccccccCC---CCCCc--------cccc-----c--ccc--CCCccEEEEc
Q 044559 271 AFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGA---VSTAF--------FSVG-----Y--SLL--LKKEKAVILQ 330 (585)
Q Consensus 271 ~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~---~~~~~--------~~~~-----~--~~~--~~~~~~i~vd 330 (585)
+|.+|||++|+||++|+++|+.+|++||+++|.+.+. ..... ...| + ..+ ....++||||
T Consensus 238 ~l~~lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~~~~~~~i~id 317 (568)
T PRK07449 238 AIAALAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLADCEPEYWVVD 317 (568)
T ss_pred HHHHHHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHhcCCCCEEEEC
Confidence 9999999999999999999999999999999976422 11110 1111 1 011 1234899999
Q ss_pred CCcceeccCCccc----cccHHHHHHHHHHHhccCcchhhhhccccCC--CCCCCCCCCCCCcCHHHHHHHHHhhCCCCC
Q 044559 331 PDRVVIANGPAFG----CVLMKDFLKALSKRLKSNTTAYENYHRIYVP--EGQPPKCEPKEPLRVNVLFQHIQKMLSSET 404 (585)
Q Consensus 331 ~d~~~i~~~~~~~----~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ 404 (585)
.|+..++ ..... ..|++.+|++ ..... ...+...+...+.. .... ......++++..+++.|++.+|+++
T Consensus 318 ~d~~~~~-~~~~~~~~i~~d~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~~~ 393 (568)
T PRK07449 318 PGPGRLD-PAHHATRRLTASVATWLEA-HPAEK-RKPWLQEWQALNEKAREAVR-EQLAEDTFTEAKVAAALADLLPEGG 393 (568)
T ss_pred CCCCcCC-CCCCceEEEEEcHHHHHHh-ccccc-chHHHHHHHHHHHHHHHHHH-HHhccCCccHHHHHHHHHHhCCCCC
Confidence 9999886 32222 2478899988 32211 11111111111000 0000 0012346899999999999999999
Q ss_pred EEEecCCccccccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceE
Q 044559 405 AVIAETGDSWFNCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTI 483 (585)
Q Consensus 405 iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ 483 (585)
++++|.|++.+|.. ++..+.+.+++.+.++++|||++|+|||++++ |+++||+|+|||||+|+++||+|++||++|++
T Consensus 394 iv~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-~~~~vv~i~GDGsf~~~~~eL~Ta~r~~l~i~ 472 (568)
T PRK07449 394 QLFVGNSLPVRDVDAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-SAKPTVALIGDLSFLHDLNGLLLLKQVPAPLT 472 (568)
T ss_pred eEEEECcHHHHHHHHccCcCCCceEEecCCccchhhHHHHHHHHHhc-CCCCEEEEechHHhhcCcHHHHhhcccCCCeE
Confidence 99999998876643 44555556688889999999999999999999 89999999999999999999999999999999
Q ss_pred EEEEeCCcceeeeeec---C----C-CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEE
Q 044559 484 IFLINNGGYTIEVEIH---D----G-PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIE 555 (585)
Q Consensus 484 ivV~NN~~~~~~~~~~---~----~-~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIe 555 (585)
+||+||++|++.+.+. . + .+....++||+++|++||+ ++++|++++||+++|+++++ .++|+|||
T Consensus 473 ivVlNN~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~V~~~~eL~~al~~a~~--~~~p~lIe 545 (568)
T PRK07449 473 IVVVNNNGGGIFSLLPQPEEEPVFERFFGTPHGVDFAHAAAMYGL-----EYHRPETWAELEEALADALP--TPGLTVIE 545 (568)
T ss_pred EEEEECCCCccccCCCCCCCcchhhHhhcCCCCCCHHHHHHHcCC-----CccCCCCHHHHHHHHHHHhc--CCCCEEEE
Confidence 9999999999743221 1 1 2233467999999999999 99999999999999999986 88999999
Q ss_pred EEcCCCCChHHHHHHHHHhh
Q 044559 556 VLVHKDDTSKELLEWGSRVS 575 (585)
Q Consensus 556 V~v~~~~~~~~~~~~~~~~~ 575 (585)
|.+++++.++.++.+.+.++
T Consensus 546 v~id~~~~~~~~~~~~~~~~ 565 (568)
T PRK07449 546 VKTNRSQGAQLLQALLAQVS 565 (568)
T ss_pred EeCChhhhHHHHHHHHHHhh
Confidence 99999999999988877654
No 55
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.9e-79 Score=600.15 Aligned_cols=503 Identities=20% Similarity=0.257 Sum_probs=407.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
.+||+|++.+.|.+++|++|||+||+.++|++|||.+++.+++|+-|||++|+|||.||||++|+ |||++|||||++|+
T Consensus 90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATNv 169 (675)
T KOG4166|consen 90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATNV 169 (675)
T ss_pred CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++++++|..|++||+++|||.|+...|.+. +| ..|-+.+.+++|||.+.|.+.+++++.|++||.+|+++ |
T Consensus 170 vtp~ADAlaDg~PlVvftGQVptsaIGtDA-----FQ---EadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRP 241 (675)
T KOG4166|consen 170 VTPLADALADGVPLVVFTGQVPTSAIGTDA-----FQ---EADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRP 241 (675)
T ss_pred cchhhHHhhcCCcEEEEecccchhhcccch-----hc---cCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCC
Confidence 999999999999999999999999888763 33 33568999999999999999999999999999999997 7
Q ss_pred CcEEEEecCCCCCCC--CCCCCCCCCCC--c--CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCccccc-chHHHHH
Q 044559 201 KPVYISVACNLPAIP--HPTFSREPVPF--S--LSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVA-KACNAFV 273 (585)
Q Consensus 201 GPV~i~iP~dv~~~~--~~~~~~~~~~~--~--~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~-~a~~~l~ 273 (585)
|||.+++|.|++..- .|.......|. . ..+.+. ....-..+++++++|+.||+|++++|.|+..+ +...+|.
T Consensus 242 GPVLVDlPKDvta~~l~~pip~~~~lPsn~~m~~~~~~~-~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~ 320 (675)
T KOG4166|consen 242 GPVLVDLPKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPP-EDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLG 320 (675)
T ss_pred CCeEeeCcHHHHHHHhcCCchhhhcCCchhhHhhCCCCc-hhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHHH
Confidence 999999999996531 11111111111 0 011111 01122578999999999999999999999764 5667999
Q ss_pred HHHHHhCCceEeCCCCccccCCCCCCccccccCCCCC---Cc------------------ccccccccCCCcc-------
Q 044559 274 ELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVST---AF------------------FSVGYSLLLKKEK------- 325 (585)
Q Consensus 274 ~lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~---~~------------------~~~~~~~~~~~~~------- 325 (585)
+|.|+++|||.||.+|-|.++.+.++.+.++ |..+. +. .|.+.+.|.+.++
T Consensus 321 ~fser~qIPVtttL~GLGs~d~~d~lSLhML-GMHG~~yAN~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~r 399 (675)
T KOG4166|consen 321 RFSERTQIPVTTTLMGLGSYDCDDELSLHML-GMHGTVYANYAVQHADLILAFGVRFDDRVTGNLSAFAPRARRAAAEGR 399 (675)
T ss_pred HHHHhhcCcceehhhcccCcCCCCchhhhhh-cccccceehhhhhccceeEEecceeccccccchhhhChhhhhhhhccc
Confidence 9999999999999999999999999877665 22221 11 3444455655555
Q ss_pred --EEEEcCCcceeccCCccc----cccHHHHHHHHHHHhccCcc----hh----hhhccccCCCCCCCCCCCCCCcCHHH
Q 044559 326 --AVILQPDRVVIANGPAFG----CVLMKDFLKALSKRLKSNTT----AY----ENYHRIYVPEGQPPKCEPKEPLRVNV 391 (585)
Q Consensus 326 --~i~vd~d~~~i~~~~~~~----~~~~~~~l~~L~~~l~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~i~~~~ 391 (585)
+||+|+++..|| +...+ +.|+...|..+...++.... .| ..|++.. +.. -.+..+...+.|++
T Consensus 400 ggIiHfdispknIg-Kvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~f-P~s-f~~~tpGe~ikPQ~ 476 (675)
T KOG4166|consen 400 GGIIHFDISPKNIG-KVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKF-PLS-FKEETPGEAIKPQY 476 (675)
T ss_pred CceEEEecCHHHhC-cccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhC-Cee-eeccCCccccChHH
Confidence 999999999997 44333 34777778777665543321 12 1232211 110 01234556799999
Q ss_pred HHHHHHhhCCC---CCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcc
Q 044559 392 LFQHIQKMLSS---ETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQV 467 (585)
Q Consensus 392 ~~~~l~~~l~~---~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~ 467 (585)
+++.|.+...+ ..||...+|.+.+|+ +.++..+++.|++++|+|+||||+|+||||+.|+|+.-||-+.||+||.|
T Consensus 477 vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~P~~iViDIDGDaSF~M 556 (675)
T KOG4166|consen 477 VIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVANPDAIVIDIDGDASFIM 556 (675)
T ss_pred HHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhcccccCcccEEEeccCCceeee
Confidence 99999998765 678888999999985 45566666679999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCceEEEEEeCCcceeeee----ecCCCcCC--CCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHH
Q 044559 468 TAQDVSTMLRCGQKTIIFLINNGGYTIEVE----IHDGPYNV--IKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIE 541 (585)
Q Consensus 468 ~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~----~~~~~~~~--~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~ 541 (585)
+.+||.|+++.++||.|+|+||...||..+ ++...|.. -.++||.++|+++|+ ++.||+..+||++.++
T Consensus 557 t~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGi-----kalRV~K~edL~~k~k 631 (675)
T KOG4166|consen 557 TVQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGI-----KALRVTKKEDLREKIK 631 (675)
T ss_pred ehHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCC-----chheeehHHHHHHHHH
Confidence 999999999999999999999999999322 22333332 257999999999999 9999999999999999
Q ss_pred hhcCCCCCCeEEEEEEcCCCCChH
Q 044559 542 NATGPKKDCLCFIEVLVHKDDTSK 565 (585)
Q Consensus 542 ~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
+++. .+||+|+||.++..+..-
T Consensus 632 efls--TkGPvLleV~v~~kehVl 653 (675)
T KOG4166|consen 632 EFLS--TKGPVLLEVIVPHKEHVL 653 (675)
T ss_pred HHhC--CCCCeEEEEEccCcccee
Confidence 9997 999999999999877543
No 56
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=1.5e-73 Score=685.62 Aligned_cols=513 Identities=16% Similarity=0.143 Sum_probs=389.1
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
..++++|++.|+++||+||||+||++++||++++.+.++|++|.++||++|+|||+||||+||+ |||++|+|||++|++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l 380 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL 380 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence 5699999999999999999999999999999999766679999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhH------HHHHHHHHHHh
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDA------HELIDTAVSTA 196 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~------~~~l~~A~~~a 196 (585)
+||++|+.+++|||+|||+++....+++. .|..||..+|+++|||++++++++++ ++.+++|++.|
T Consensus 381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga--------~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A 452 (1655)
T PLN02980 381 PAVVEASQDFVPLLLLTADRPPELQDAGA--------NQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWA 452 (1655)
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhcCCC--------CcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999988666542 34678999999999999999999983 58999999999
Q ss_pred hhc-CCcEEEEecCCCCCCCCCCCC------------CCCCCCc-CC--CCCCChhhHHHHHHHHHHHHHhcCCCEEEcC
Q 044559 197 LKE-SKPVYISVACNLPAIPHPTFS------------REPVPFS-LS--PKLSNEMGLEAAVEAAAEFLNKAVKPVLVAG 260 (585)
Q Consensus 197 ~~~-~GPV~i~iP~dv~~~~~~~~~------------~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G 260 (585)
+++ +|||||+||+|.+........ ....+.. .. +......+....+++++++|.+||||+|++|
T Consensus 453 ~s~rpGPVhL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkRPvIvaG 532 (1655)
T PLN02980 453 TSSPCGPVHINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAKRGLLLIG 532 (1655)
T ss_pred hCCCCCCEEEECccCCccccccccccccccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCCCcEEEEc
Confidence 987 699999999764321110000 0000000 00 0000011345679999999999999999999
Q ss_pred CcccccchHHHHHHHHHHhCCceEeCCCC-c------cccCC--CCCCccccccC----CCC----CCc--ccc------
Q 044559 261 PKMRVAKACNAFVELADACGYAVAVMPSA-K------GLVPE--HHPHFIGTYWG----AVS----TAF--FSV------ 315 (585)
Q Consensus 261 ~g~~~~~a~~~l~~lae~~~~Pv~tt~~g-k------g~~~~--~hp~~~g~~~g----~~~----~~~--~~~------ 315 (585)
.|+..+++. ++.+|||++++||++|+++ + |+||+ +||+++|.+.. ... ... ..+
T Consensus 533 ~G~~~~~a~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl~iG~rl~s 611 (1655)
T PLN02980 533 AIHTEDDIW-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQIGSRITS 611 (1655)
T ss_pred CCCchHHHH-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEEEeCCcccc
Confidence 998766555 4589999999999999975 4 99999 89999987621 100 001 011
Q ss_pred -----cccccCCCccEEEEcCCcceeccCCccc----cccHHHHHHHHHHHhccCc-chh-hhhccccCC--CCCCCCCC
Q 044559 316 -----GYSLLLKKEKAVILQPDRVVIANGPAFG----CVLMKDFLKALSKRLKSNT-TAY-ENYHRIYVP--EGQPPKCE 382 (585)
Q Consensus 316 -----~~~~~~~~~~~i~vd~d~~~i~~~~~~~----~~~~~~~l~~L~~~l~~~~-~~~-~~~~~~~~~--~~~~~~~~ 382 (585)
.+..+.+ .++||||.|+..++ ..... ..|++.++++|.+...... ..| ..+...... ........
T Consensus 612 ~~~t~~~~~~~~-~~~I~ID~d~~~i~-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 689 (1655)
T PLN02980 612 KRVSQMLEKCFP-FSYILVDKHPCRHD-PSHLVTHRVQSNIVQFADCLLKAQFPRRRSKWHGHLQALDGMVAQEISFQIH 689 (1655)
T ss_pred HHHHHHHHhCCC-CeEEEECCCCCccC-CcccceEEEEeCHHHHHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1111223 35999999999886 22221 2478999998866432211 112 222111000 00000001
Q ss_pred CCCCcCHHHHHHHHHhhCCCCCEEEecCCccc----ccc-cccc-----------ccCCCeeee-cCCcccccc--hhHH
Q 044559 383 PKEPLRVNVLFQHIQKMLSSETAVIAETGDSW----FNC-QKLK-----------LPKGCGYEF-QMQYGSIGW--SVGA 443 (585)
Q Consensus 383 ~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~----~~~-~~~~-----------~~~~~~~~~-~~~~g~mG~--~lpa 443 (585)
...++++.++++.|++.+|+|.+++.|.|++. .|. .+++ ...+.+++. +.++|+||+ ++|+
T Consensus 690 ~~~~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lpa 769 (1655)
T PLN02980 690 AESSLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLST 769 (1655)
T ss_pred cCCCcchHHHHHHHHHhCCCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHHH
Confidence 12258899999999999999999999998642 332 2221 233444664 678899999 5999
Q ss_pred HHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHh--CCceEEEEEeCCcceeeeeec----------CCCcCCCCCCCh
Q 044559 444 TLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRC--GQKTIIFLINNGGYTIEVEIH----------DGPYNVIKNWNY 511 (585)
Q Consensus 444 AiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~--~lpv~ivV~NN~~~~~~~~~~----------~~~~~~~~~~d~ 511 (585)
|||++++. +++|++|+|||||+|++|||+|++|+ ++|++|||+||++|+|++.+. +..+....++||
T Consensus 770 AIGaala~-~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~~df 848 (1655)
T PLN02980 770 AIGFAVGC-NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHDISI 848 (1655)
T ss_pred HHHHhhcC-CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCCCCH
Confidence 99999997 89999999999999999999999994 999999999999999854321 111222357999
Q ss_pred HHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHHHHhh
Q 044559 512 TGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVS 575 (585)
Q Consensus 512 ~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~ 575 (585)
.++|++||+ ++++|++++||.++|++++. .++|+||||.++++++.+..+.+.....
T Consensus 849 ~~lA~a~G~-----~~~rV~~~~eL~~aL~~a~~--~~~p~lIEV~t~~~~~~~~~~~~~~~~~ 905 (1655)
T PLN02980 849 ENLCLAHGV-----RHLHVGTKSELEDALFTSQV--EQMDCVVEVESSIDANAAFHSTLRKFAC 905 (1655)
T ss_pred HHHHHHcCC-----ceeecCCHHHHHHHHHHhhc--cCCCEEEEEecChhhhHHHHHHHHHHHH
Confidence 999999999 99999999999999999986 7899999999999999888776665443
No 57
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=1.6e-67 Score=503.05 Aligned_cols=504 Identities=18% Similarity=0.221 Sum_probs=405.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhc-Cc-cEEEEeCChhhHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLS 120 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~t-g~-~v~~~tsGpG~~n 120 (585)
.|..-|+-+-.|++.||+..||+||..+.|++.+|.+..+|+.|++||-.+|.+||.||.|++ |. |||+.||||+.+.
T Consensus 3 kmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagtd 82 (592)
T COG3960 3 KMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (592)
T ss_pred chhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCccc
Confidence 366778889999999999999999999999999999888899999999999999999999986 55 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++|++.|+.|++|+|+||||.|+....+. .+ |..|...+.+|++||..++..|..++.++++||...+++
T Consensus 83 mitglysa~adsipilcitgqaprarl~ke-----df---qavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~r 154 (592)
T COG3960 83 MITGLYSASADSIPILCITGQAPRARLHKE-----DF---QAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGR 154 (592)
T ss_pred hhhhhhhcccccccEEEecCCCchhhhchh-----hh---hhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCC
Confidence 999999999999999999999998754442 22 345778899999999999999999999999999999986
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
||||.|++|+|+|..+..+....-.| ++. ..+.....+.++++.+|..++||+|++|+|....++.+.+.+|||..
T Consensus 155 pgpvlidlp~dvq~aeiefd~d~yep--l~~--~kpaatr~qaekalaml~~aerplivagggiinadaa~l~~efael~ 230 (592)
T COG3960 155 PGPVLIDLPFDVQVAEIEFDPDMYEP--LPV--YKPAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELT 230 (592)
T ss_pred CCCeEEecccceEEEEEecCccccCc--CCc--CCchhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHHHc
Confidence 89999999999987543222111111 111 11234566788999999999999999999999999999999999999
Q ss_pred CCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceecc
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIAN 338 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~ 338 (585)
|+||+.|.||-|++|++||+..|+..-+.+... .|.+...+.++.++||+|++|.+||
T Consensus 231 gvpviptlmgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanrhtgsv~vyt~gr~fihvdieptqig- 309 (592)
T COG3960 231 GVPVIPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQIG- 309 (592)
T ss_pred CCcccchhccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhcccCceeeeecCceEEEEeccccccc-
Confidence 999999999999999999999998632222111 1222223456778999999999997
Q ss_pred CCccccc----cHHHHHHHHHHHhccCcc-----hhhhhc---cccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 044559 339 GPAFGCV----LMKDFLKALSKRLKSNTT-----AYENYH---RIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAV 406 (585)
Q Consensus 339 ~~~~~~~----~~~~~l~~L~~~l~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii 406 (585)
+...+++ |.+..|+.+++...+.+. .|..|. +.+.....+...-+..++.|+++++.+++.++.|..+
T Consensus 310 rvf~pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~fgrd~~y 389 (592)
T COG3960 310 RVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCY 389 (592)
T ss_pred eeecCccceeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhcCCceeE
Confidence 3333332 677888887765432111 222332 1111111122223456899999999999999999999
Q ss_pred EecCCccccc-cccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEE
Q 044559 407 IAETGDSWFN-CQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIF 485 (585)
Q Consensus 407 v~d~G~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~iv 485 (585)
++.+|.+... ++++...+++.|+..+..|.+||.+|+|+|...|.|+|.+|++.||-.|+|-+.||....++++|-+.|
T Consensus 390 vstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~adp~r~vvalsgdydfqfmieelavgaq~k~pyihv 469 (592)
T COG3960 390 VTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIPYIHV 469 (592)
T ss_pred EEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhcccCceEEE
Confidence 9999999764 566666666669999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcceeeeeec---CCCcC------C-------CCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CC
Q 044559 486 LINNGGYTIEVEIH---DGPYN------V-------IKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PK 547 (585)
Q Consensus 486 V~NN~~~~~~~~~~---~~~~~------~-------~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~ 547 (585)
|.||..+|..++.+ +..|+ + -..+|..+++|++|+ +.+||.+++|+..+++++.. .+
T Consensus 470 ~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgc-----kairv~~p~e~a~af~~a~~lm~e 544 (592)
T COG3960 470 LVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGC-----KAIRVFKPEDIAPAFEQAKALMAQ 544 (592)
T ss_pred EecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCc-----eeEEecChHHhhHHHHHHHHHHHh
Confidence 99999888732211 22221 1 145899999999998 99999999999999998865 45
Q ss_pred CCCeEEEEEEcCCCCCh
Q 044559 548 KDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 548 ~~gp~vIeV~v~~~~~~ 564 (585)
..-|+|+|+.+.+-.+.
T Consensus 545 h~vpvvve~ilervtni 561 (592)
T COG3960 545 HRVPVVVEVILERVTNI 561 (592)
T ss_pred cCCCeeeehHHHHhhcc
Confidence 77899999999875543
No 58
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=2.3e-63 Score=530.24 Aligned_cols=390 Identities=20% Similarity=0.188 Sum_probs=302.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHH
Q 044559 46 LGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNA 124 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~ 124 (585)
.+++|++.|+++||+||||+||+++.+|++++.+.++|++|.+|||++|+||||||||+||+ |||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 47999999999999999999999999999999655689999999999999999999999999 99999999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhh------HHHHHHHHHHHhhh
Q 044559 125 IAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLED------AHELIDTAVSTALK 198 (585)
Q Consensus 125 l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~------~~~~l~~A~~~a~~ 198 (585)
|++||.+++|||+|+|+++....+++. .|..||.++|+++|||+.+++++++ +++.+++|++.|.+
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~--------~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~ 153 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGA--------NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQG 153 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCC--------CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhC
Confidence 999999999999999999987655542 2456899999999999999999998 89999999999999
Q ss_pred c-CCcEEEEecCCCCCCCCCCCCCCCC-C--CcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHH
Q 044559 199 E-SKPVYISVACNLPAIPHPTFSREPV-P--FSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVE 274 (585)
Q Consensus 199 ~-~GPV~i~iP~dv~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~ 274 (585)
+ +|||||+||.|++..+.+....... . ...........+.+..+++++++|.+||||+|++|.|+.++ +.++|.+
T Consensus 154 ~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~-a~~~l~~ 232 (432)
T TIGR00173 154 PPPGPVHINVPFREPLYPDPLLQPLQPWLRSGVPTVTTGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAE-DAEALAA 232 (432)
T ss_pred CCCCCEEEeCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHH-HHHHHHH
Confidence 6 6999999999996532211000000 0 00000011112345679999999999999999999999876 8999999
Q ss_pred HHHHhCCceEeCCCCccccCCCCCCccccccCCCCCC--------c------------ccccccccCCCccEEEEcCCcc
Q 044559 275 LADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTA--------F------------FSVGYSLLLKKEKAVILQPDRV 334 (585)
Q Consensus 275 lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~--------~------------~~~~~~~~~~~~~~i~vd~d~~ 334 (585)
|+|++++||++|++|||.+ ++| +++|.+.+..+.. . .+..| .+.++.++||||.|+.
T Consensus 233 lae~~~~PV~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~-~~~~~~~~i~vd~d~~ 309 (432)
T TIGR00173 233 LAEALGWPLLADPLSGLRG-GPH-LVIDHYDLLLANPELREELQPDLVIRFGGPPVSKRLRQW-LARQPAEYWVVDPDPG 309 (432)
T ss_pred HHHhCCCeEEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhCCCCEEEEeCCCcchhHHHHH-HhCCCCcEEEECCCCC
Confidence 9999999999999999999 789 9998653211111 1 01112 1233568999999999
Q ss_pred eeccCCccc----cccHHHHHHHHHHHhccCcc-hhhhhccccCC--CCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 044559 335 VIANGPAFG----CVLMKDFLKALSKRLKSNTT-AYENYHRIYVP--EGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVI 407 (585)
Q Consensus 335 ~i~~~~~~~----~~~~~~~l~~L~~~l~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv 407 (585)
.++ ..... ..|++.+|++|.+.++.... +.+.|.+.... .... ....+.++++.++++.|++.+|+|.+|+
T Consensus 310 ~~~-~~~~~~~~i~~D~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~p~~~~~~l~~~lp~d~ivv 387 (432)
T TIGR00173 310 WLD-PSHHATTRLEASPAEFAEALAGLLKNPDAAWLDRWLEAEAKAREALR-EVLAEEPLSELSLARALSQLLPEGAALF 387 (432)
T ss_pred ccC-CCCCceEEEEECHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHH-HHhccCCccHHHHHHHHHHhCCCCCeEE
Confidence 886 32222 24899999999888754222 22223211000 0000 0011346899999999999999999999
Q ss_pred ecCCcccccccc-cccc-CCCeeeecCCcccccchhHHHHhhhh
Q 044559 408 AETGDSWFNCQK-LKLP-KGCGYEFQMQYGSIGWSVGATLGYAQ 449 (585)
Q Consensus 408 ~d~G~~~~~~~~-~~~~-~~~~~~~~~~~g~mG~~lpaAiGaal 449 (585)
.|.|++..|... +... .+.++++++++|+||++||+|||+++
T Consensus 388 ~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 388 VGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred EECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 999999887544 4443 45779999999999999999999986
No 59
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-61 Score=479.82 Aligned_cols=514 Identities=20% Similarity=0.253 Sum_probs=391.5
Q ss_pred CCCcHHHHHHHHHHHcCC---------CEEEecCCCC-hHHHHHhhhcCC-CCeEEeCcchHHHHHHHhHHhHhcCc---
Q 044559 42 SESTLGRHLARRLVQIGA---------TDVFSVPGDF-NLTLLDHLIAEP-GLNLIGCCNELNAGYAADGYARSRGV--- 107 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV---------~~vFg~PG~~-~~~l~~al~~~~-~i~~i~~~~E~~A~~~A~Gyar~tg~--- 107 (585)
..+|.++++++.|.+.=+ .-||.+-|.. ...+=+||.+.+ .+.++..+||++-+++|.||+|...|
T Consensus 5 vRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~ 84 (617)
T COG3962 5 VRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRI 84 (617)
T ss_pred ehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhcee
Confidence 358999999999987533 3567777754 557888998755 48999999999999999999998764
Q ss_pred cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCC-hhHHHhhhcceeEEEEEeCChhhHH
Q 044559 108 GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD-FSQELRCFQTVTCYQAVVNNLEDAH 186 (585)
Q Consensus 108 ~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~-~~dq~~~~~~~tk~~~~v~~~~~~~ 186 (585)
-+|..+.|||++|++++.+-|..+++|+|+|-||.-.. +..++.+||.-+..+ .+.-.+.|+|++||.-+|++||++-
T Consensus 85 ~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~-R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~ 163 (617)
T COG3962 85 YAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFAT-RQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLM 163 (617)
T ss_pred eEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcc-cCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHH
Confidence 56777889999999999999999999999999996443 445555554332111 1123589999999999999999999
Q ss_pred HHHHHHHHHhhhc--CCcEEEEecCCCCCCCCCCCCCC----CCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcC
Q 044559 187 ELIDTAVSTALKE--SKPVYISVACNLPAIPHPTFSRE----PVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAG 260 (585)
Q Consensus 187 ~~l~~A~~~a~~~--~GPV~i~iP~dv~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G 260 (585)
..+.||++..+.+ .|||-|.||.||+.+ ..+.+. +.-.+... +.+++..+..++++|+++|||+||+|
T Consensus 164 sal~rA~~VmTDPA~~GpvTl~l~QDVq~e--A~Dyp~~FF~~rv~~~rR----~~Pd~~eL~~A~~lik~ak~PlIvaG 237 (617)
T COG3962 164 SALPRAMRVMTDPADCGPVTLALCQDVQAE--AYDYPESFFEKRVWRIRR----PPPDERELADAAALIKSAKKPLIVAG 237 (617)
T ss_pred HHHHHHHHHhCChhhcCceEEEechhhhhh--hcCCcHHhhhhhhhhccC----CCCCHHHHHHHHHHHHhcCCCEEEec
Confidence 9999999999886 699999999999864 221111 11111111 13467789999999999999999999
Q ss_pred CcccccchHHHHHHHHHHhCCceEeCCCCccccCCCCCCcccccc--CCCCCCc------------------cccccccc
Q 044559 261 PKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYW--GAVSTAF------------------FSVGYSLL 320 (585)
Q Consensus 261 ~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~--g~~~~~~------------------~~~~~~~~ 320 (585)
+|+.++++.++|++|+|..|+||+.|-.|||.++.+||+.+|... |..+.+. .|.+|..|
T Consensus 238 GGv~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~~A~~ADlVigiGTR~~DFTTgS~alF 317 (617)
T COG3962 238 GGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALF 317 (617)
T ss_pred CceeechHHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHhhhhhcCEEEEecccccccccccHHHh
Confidence 999999999999999999999999999999999999999999762 2221111 45556555
Q ss_pred C-CCccEEEEcCCcceeccCCccc-cccHHHHHHHHHHHhccCcc--hh-hhhccc---cCCCCCC-CCCCC--CCCcCH
Q 044559 321 L-KKEKAVILQPDRVVIANGPAFG-CVLMKDFLKALSKRLKSNTT--AY-ENYHRI---YVPEGQP-PKCEP--KEPLRV 389 (585)
Q Consensus 321 ~-~~~~~i~vd~d~~~i~~~~~~~-~~~~~~~l~~L~~~l~~~~~--~~-~~~~~~---~~~~~~~-~~~~~--~~~i~~ 389 (585)
. +..+++.++..+..-.+..-++ ..|.+..|.+|.+.|..-+. .| ++..+. +..+... ..... ....+.
T Consensus 318 ~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt~ptq 397 (617)
T COG3962 318 KNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTAAGWTDERERLKAAWDAEADAPTAKNHFLNTLPTQ 397 (617)
T ss_pred cCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhcccccccccccccCccc
Confidence 4 5678999887766443122222 23788999999988875443 12 111111 1010000 00111 123466
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcccccccc---ccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhc
Q 044559 390 NVLFQHIQKMLSSETAVIAETGDSWFNCQK---LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQ 466 (585)
Q Consensus 390 ~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~---~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~ 466 (585)
.+++-.+++..+++++|++-.|+---.... ...|.. |...++|++|||-+..++|+|+|.|+|.|++++|||||+
T Consensus 398 ~~vigav~~~~~~~svvvcAAGsLPGdLhkLW~~~~p~~--YH~EYgfSCMGYEiaG~lG~K~a~pdreV~vmVGDGSym 475 (617)
T COG3962 398 TQVIGAVQRTISDDSVVVCAAGSLPGDLHKLWRAGVPGT--YHLEYGFSCMGYEIAGGLGAKAAEPDREVYVMVGDGSYM 475 (617)
T ss_pred hhHHHHHHhhcCCCcEEEEeCCCCcHHHHHHhccCCCCc--eeeeecccccccccccccccccCCCCCeEEEEEcccchh
Confidence 789999999999999999988865322222 234444 888999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCceEEEEEeCCcceeeee---ecCC-CcC----------CCCCCChHHHHHHhcCCCCCceeEEEcC
Q 044559 467 VTAQDVSTMLRCGQKTIIFLINNGGYTIEVE---IHDG-PYN----------VIKNWNYTGLVDAIHNGEGKCWTTKVFC 532 (585)
Q Consensus 467 ~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~---~~~~-~~~----------~~~~~d~~~la~a~G~~~~~~~~~~V~~ 532 (585)
|--.||.|++.+++.+++++++|.|||.... -+++ .|+ .+..+||++.|++||+ +.++|.+
T Consensus 476 MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga-----~~~kv~~ 550 (617)
T COG3962 476 MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGA-----KAYKVGT 550 (617)
T ss_pred hhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCc-----eeEecCC
Confidence 9999999999999999999999999997221 1222 221 2578999999999999 9999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHH
Q 044559 533 EEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWG 571 (585)
Q Consensus 533 ~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~ 571 (585)
.+||+.+|+++.. +.+++||+|.+++...++..-.||
T Consensus 551 i~eL~aAL~~Ak~--~~~ttvi~I~t~P~~~t~~g~~WW 587 (617)
T COG3962 551 IEELEAALADAKA--SDRTTVIVIDTDPKTTTDDGGSWW 587 (617)
T ss_pred HHHHHHHHHHHHh--CCCCEEEEEecCCccccCCCCcee
Confidence 9999999999986 899999999999876555433333
No 60
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-54 Score=444.87 Aligned_cols=509 Identities=17% Similarity=0.164 Sum_probs=367.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
....+..|++.|.++||++++.+|||+++||.-++.+++.|+++.-.+||+|+|+|.|.||++++ .+++||||++++|+
T Consensus 7 nt~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl 86 (566)
T COG1165 7 NTLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANL 86 (566)
T ss_pred hHHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhc
Confidence 35688999999999999999999999999999999888899999999999999999999999999 88999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHH-------HHHHHHH
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHE-------LIDTAVS 194 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~-------~l~~A~~ 194 (585)
++||.||.+.++||||+|+|+|.+.++++ .+|+++|..+|.++++|+..+..|++-.+ .-.+++.
T Consensus 87 ~PAViEA~~srvpLIVLTADRP~EL~~~G--------AnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~ 158 (566)
T COG1165 87 YPAVIEANLSRVPLIVLTADRPPELRGCG--------ANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQ 158 (566)
T ss_pred cHHHHhhhhcCCceEEEeCCCCHHHhcCC--------CchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988776 46899999999999999999988765433 3344555
Q ss_pred Hhhhc-CCcEEEEecCCCCCCCCCCCCCCCCCC-----c-----CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcc
Q 044559 195 TALKE-SKPVYISVACNLPAIPHPTFSREPVPF-----S-----LSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKM 263 (585)
Q Consensus 195 ~a~~~-~GPV~i~iP~dv~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~ 263 (585)
.|+++ +||||||+|++.+..+.+... ..... . ..+...+ .. .+.+.+ .+ ...++|.+||+|.-.
T Consensus 159 ~a~~~~~GpVHiN~PfrePL~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~-~~~~~rgviv~G~~~ 233 (566)
T COG1165 159 QARTPHAGPVHINVPFREPLVPDLEPE-GAGTPWGRPLGHWWFYTGPWTVD-QG-PDLLSE-WF-FWRQKRGVIVAGRMS 233 (566)
T ss_pred hccCCCCCceEecCCCCccCCCCCCcc-ccccccccccCchhhcCCceeee-cc-cccccc-hh-hhcccCceEEEecCc
Confidence 55555 799999999998764221110 01000 0 0000000 00 111222 22 235799999999766
Q ss_pred cccchHHHHHHHHHHhCCceEeCCCCc-cc-cCCCCCCccccc-cC---------CCCCCcccccccccC---CCccEEE
Q 044559 264 RVAKACNAFVELADACGYAVAVMPSAK-GL-VPEHHPHFIGTY-WG---------AVSTAFFSVGYSLLL---KKEKAVI 328 (585)
Q Consensus 264 ~~~~a~~~l~~lae~~~~Pv~tt~~gk-g~-~~~~hp~~~g~~-~g---------~~~~~~~~~~~~~~~---~~~~~i~ 328 (585)
.. ....+.++++.+|+|+++.+.+. +. ++... +++..- .. ..+..........|. ...+++.
T Consensus 234 ~~--e~~~i~~~a~~lg~PilaDplS~lr~~i~~yD-~~L~~~~~~~~L~~d~VI~fG~~~~SK~l~qwl~~~~~~~~~v 310 (566)
T COG1165 234 AQ--EGKGILALANTLGWPILADPLSPLRNYIPCYD-LWLANPKAAEKLRPDIVIQFGSPPTSKRLLQWLADTEPIEYWV 310 (566)
T ss_pred hh--hhHHHHHHHHHhCCceecccccccCCCcccch-hhhcCchhhhhcCccEEEEeCCCcccHHHHHHHhccCCCcEEE
Confidence 43 56669999999999999998752 11 11111 111100 00 000000111111122 2356778
Q ss_pred EcCCcceecc---CCccccccHHHHHHHHHHHhccCcchhhhhccccCCCC--CCCCCCCCCCcCHHHHHHHHHhhCCCC
Q 044559 329 LQPDRVVIAN---GPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEG--QPPKCEPKEPLRVNVLFQHIQKMLSSE 403 (585)
Q Consensus 329 vd~d~~~i~~---~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~l~~~l~~~ 403 (585)
||.....+.. .......++..+++.+-.....++.|.++|.......+ ....... ..++..+++..|.+.+|++
T Consensus 311 vd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~~~-~~~~e~~~a~~l~~~lp~~ 389 (566)
T COG1165 311 VDPGGGWLDPSHHATTRLSADVATWARSIHPAGRIRKPWLDEWLALNEKARQAVRDQLAA-EALTEAHLAAALADLLPPQ 389 (566)
T ss_pred EcCCCCcCCcccccceEEEeehhHhHHHhccccccccHHHHHHHHHHHHHHHHHHHHhcc-cCchhhHHHHHHHHhCCCC
Confidence 8765543321 11222346677776554332212233333432110000 0000111 1567788999999999999
Q ss_pred CEEEecCCccccccccc-cccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCce
Q 044559 404 TAVIAETGDSWFNCQKL-KLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKT 482 (585)
Q Consensus 404 ~iiv~d~G~~~~~~~~~-~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv 482 (585)
+.++....+..+....+ ..+.+.+.++++|.++|++.+++|+|++.+. .+++|+++||.||+|+++.|....+...|+
T Consensus 390 ~~LFvgNSmpVRdvd~~~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a~-~~ptv~liGDLS~lhD~NgLl~~k~~~~~l 468 (566)
T COG1165 390 DQLFVGNSMPVRDVDALGQLPAGYRVYSNRGASGIDGTVSTALGIARAT-QKPTVALIGDLSFLHDLNGLLLLKKVPQPL 468 (566)
T ss_pred CeEEEecCchhhhHHHhccCccCceeecCCCccccchhHHHHhhhhhhc-CCceEEEEechhhhhccchHhhcCCCCCCe
Confidence 99995444444444333 3447788999999999999999999999985 678999999999999999999888899999
Q ss_pred EEEEEeCCcceeeeeecCC--------CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEE
Q 044559 483 IIFLINNGGYTIEVEIHDG--------PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFI 554 (585)
Q Consensus 483 ~ivV~NN~~~~~~~~~~~~--------~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vI 554 (585)
+|||+||+|+||+..+..+ .|...+..||+.+|+.||. +|.++.+.+||+++++.+.. ..|..||
T Consensus 469 tIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~tPh~ldF~~la~~y~l-----~y~~~~s~~~l~~~~~~~~~--~~g~~vi 541 (566)
T COG1165 469 TIVVVNNNGGGIFSLLPQAQSEPVFERLFGTPHGLDFAHLAATYGL-----EYHRPQSWDELGEALDQAWR--RSGTTVI 541 (566)
T ss_pred EEEEEeCCCceeeeeccCCCCcchHHHhcCCCCCCCHHHHHHHhCc-----cccccCcHHHHHHHHhhhcc--CCCcEEE
Confidence 9999999999997665421 1333478999999999999 99999999999999999985 7889999
Q ss_pred EEEcCCCCChHHHHHHHHHhhh
Q 044559 555 EVLVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 555 eV~v~~~~~~~~~~~~~~~~~~ 576 (585)
||++++++..+.++.+.+.+..
T Consensus 542 Evkt~r~~~~~~~q~l~~~~~~ 563 (566)
T COG1165 542 EVKTDRSDGAQLHQALLAQVSH 563 (566)
T ss_pred EEecChhHHHHHHHHHHHHHhh
Confidence 9999999999999999887764
No 61
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=100.00 E-value=6.2e-41 Score=308.59 Aligned_cols=161 Identities=25% Similarity=0.407 Sum_probs=150.2
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHH
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLN 123 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~ 123 (585)
|++++|++.|+++||++|||+||+++++|++++.+.++|++|.+|||++|+|||+||+|++|+ +||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 589999999999999999999999999999999765689999999999999999999999999 9999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcE
Q 044559 124 AIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPV 203 (585)
Q Consensus 124 ~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 203 (585)
|+++|+.+++|||+|+|+.+....+++ .+ |..||.++++++|||+.++++++++++.+++|++.|++++|||
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV 152 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTD-----YF---QEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVA 152 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCC-----CC---cccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcCCCCE
Confidence 999999999999999999998765543 12 3458999999999999999999999999999999999988999
Q ss_pred EEEecCCCCC
Q 044559 204 YISVACNLPA 213 (585)
Q Consensus 204 ~i~iP~dv~~ 213 (585)
||+||.|++.
T Consensus 153 ~l~iP~dv~~ 162 (164)
T cd07039 153 VLILPGDVQD 162 (164)
T ss_pred EEEeChHHhc
Confidence 9999999965
No 62
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=100.00 E-value=3.2e-39 Score=294.56 Aligned_cols=153 Identities=24% Similarity=0.296 Sum_probs=142.1
Q ss_pred HHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHH
Q 044559 49 HLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAG 127 (585)
Q Consensus 49 ~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~ 127 (585)
+|++.|+++||++|||+||+++.+|++++.++++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|+++||++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 68999999999999999999999999999766689999999999999999999999999 99999999999999999999
Q ss_pred hhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhh------HHHHHHHHHHHhhhc-C
Q 044559 128 AYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLED------AHELIDTAVSTALKE-S 200 (585)
Q Consensus 128 A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~------~~~~l~~A~~~a~~~-~ 200 (585)
|+.+++|||+|+|+.+....+++ . .|..||..+|+++|||+.+++++++ +++.+++|++.|+++ |
T Consensus 82 A~~~~~Pvl~i~g~~~~~~~~~~-----~---~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~ 153 (162)
T cd07037 82 AYYSGVPLLVLTADRPPELRGTG-----A---NQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPP 153 (162)
T ss_pred HHhcCCCEEEEECCCCHHhcCCC-----C---CcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999988755443 2 2356889999999999999999999 999999999999996 6
Q ss_pred CcEEEEecC
Q 044559 201 KPVYISVAC 209 (585)
Q Consensus 201 GPV~i~iP~ 209 (585)
|||||+||+
T Consensus 154 GPv~l~iP~ 162 (162)
T cd07037 154 GPVHLNLPF 162 (162)
T ss_pred CCEEEeccC
Confidence 999999995
No 63
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=100.00 E-value=7.4e-39 Score=294.40 Aligned_cols=162 Identities=51% Similarity=0.871 Sum_probs=147.5
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHHHHH
Q 044559 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 127 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l~~ 127 (585)
|+|++.|+++||+||||+||+.+.+|+++|.+.++|++|.++||++|+|||+||+|+|+.+||++|+|||++|+++||++
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~~ 80 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIAG 80 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHHH
Confidence 47999999999999999999999999999976558999999999999999999999993399999999999999999999
Q ss_pred hhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEe
Q 044559 128 AYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISV 207 (585)
Q Consensus 128 A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~i 207 (585)
|+.+++|||+|+|+.+....+++.++|+..+..++.||.++++++|||++++.+++++++.+++||+.|.+++|||||+|
T Consensus 81 A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 81 AYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 99999999999999998877776656654432234478999999999999999999999999999999999889999999
Q ss_pred cC
Q 044559 208 AC 209 (585)
Q Consensus 208 P~ 209 (585)
|.
T Consensus 161 P~ 162 (162)
T cd07038 161 PR 162 (162)
T ss_pred cC
Confidence 94
No 64
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=100.00 E-value=1.1e-37 Score=290.90 Aligned_cols=164 Identities=33% Similarity=0.500 Sum_probs=147.6
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
||++++|++.|+++||++|||+||+.+.+|+++|.+.++|++|.+|||.+|++||+||+|++|+ +||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 7899999999999999999999999999999999987689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhh-cCC
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESK 201 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~-~~G 201 (585)
++|++|+.+++|||+|+|+++....+++ .++ +..||.++|++++||++++.+++++++.+++|++.|.. ++|
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~q--~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~g 153 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRG-----AFQ--QEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPG 153 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTT-----STT--SSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTS
T ss_pred HHHhhcccceeeEEEEecccchhhhccc-----ccc--cchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCc
Confidence 9999999999999999999998866643 222 24589999999999999999999999999999999966 489
Q ss_pred cEEEEecCCCCCC
Q 044559 202 PVYISVACNLPAI 214 (585)
Q Consensus 202 PV~i~iP~dv~~~ 214 (585)
||||+||.|++..
T Consensus 154 Pv~l~ip~dv~~~ 166 (172)
T PF02776_consen 154 PVYLEIPQDVQEA 166 (172)
T ss_dssp EEEEEEEHHHHTS
T ss_pred cEEEEcChhHhhC
Confidence 9999999999774
No 65
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=100.00 E-value=2.1e-35 Score=302.83 Aligned_cols=331 Identities=21% Similarity=0.225 Sum_probs=234.7
Q ss_pred CCCEEEecCCCChHHHHHhhh-cCCCCeEEeCcchHHHHHHHhHHhHhcCc-c-EEEEeCChh-hHHHHHHHHHhhhcCC
Q 044559 58 GATDVFSVPGDFNLTLLDHLI-AEPGLNLIGCCNELNAGYAADGYARSRGV-G-ACVVTFTVG-GLSVLNAIAGAYSENL 133 (585)
Q Consensus 58 GV~~vFg~PG~~~~~l~~al~-~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~-v~~~tsGpG-~~n~~~~l~~A~~~~~ 133 (585)
||++++|+|.+...+|++.+. ..+.+++|.+.+|..|+.+|.||+.+||+ + |.+-.||.| ..|.+++|++....++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 799999999999999999998 44589999999999999999999999987 4 556788888 6677777777789999
Q ss_pred cEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 044559 134 PLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPA 213 (585)
Q Consensus 134 PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~~ 213 (585)
|||+|+|.+...... +. .|...+..+| +.+|+ . ++||..+..
T Consensus 81 P~l~~i~~RG~~g~~------------de-pqh~~~G~~t------------~~lL~----~---------~~i~~~~~~ 122 (361)
T TIGR03297 81 PLLLIVGWRGEPGVH------------DE-PQHVKQGRIT------------LSLLD----A---------LEIPWEVLS 122 (361)
T ss_pred CeeEEEecCCCCCCC------------CC-chhhHHhHHH------------HHHHH----H---------cCCCEEECC
Confidence 999999987664111 11 1111111111 11111 1 244444321
Q ss_pred CCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCCcccc
Q 044559 214 IPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLV 293 (585)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~ 293 (585)
. ......+.++++.+...+.++|+.++= .|+.|
T Consensus 123 ~-------------------~~~~~~~~~~~a~~~~~~~~~p~a~l~----------------------------~~~~~ 155 (361)
T TIGR03297 123 T-------------------DNDEALAQIERALAHALATSRPYALVV----------------------------RKGTF 155 (361)
T ss_pred C-------------------ChHHHHHHHHHHHHHHHHHCCCEEEEE----------------------------ccccc
Confidence 0 001133456666666666666655431 01111
Q ss_pred CCCCCCccccccCCCCCCcccccccccCCCccEEEEcCCcceeccCCccccccHHHHHHHHHHHhccCcchhhhhccccC
Q 044559 294 PEHHPHFIGTYWGAVSTAFFSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYV 373 (585)
Q Consensus 294 ~~~hp~~~g~~~g~~~~~~~~~~~~~~~~~~~~i~vd~d~~~i~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~ 373 (585)
.. + . . +. . . .
T Consensus 156 ~~--------~-------------~--~-~~---------~--~-~---------------------------------- 165 (361)
T TIGR03297 156 AS--------Y-------------K--L-KG---------E--P-A---------------------------------- 165 (361)
T ss_pred cc--------c-------------c--c-cc---------C--C-C----------------------------------
Confidence 00 0 0 0 00 0 0 0
Q ss_pred CCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccccc-c--cC-CCeeeecCCcccccchhHHHHhhhh
Q 044559 374 PEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLK-L--PK-GCGYEFQMQYGSIGWSVGATLGYAQ 449 (585)
Q Consensus 374 ~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~-~--~~-~~~~~~~~~~g~mG~~lpaAiGaal 449 (585)
......+++.++++.+.+.+++++++++|+|........++ . +. +..++. +|+||+++|+|+|+++
T Consensus 166 -------~~~~~~~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~f~~---~GsMG~a~p~AlG~al 235 (361)
T TIGR03297 166 -------NPLPTLMTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFLT---VGSMGHASQIALGLAL 235 (361)
T ss_pred -------CCCcCCCCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCceEe---echhhhHHHHHHHHHH
Confidence 00011368889999999999999999999998654322222 1 11 233543 5999999999999999
Q ss_pred cCCCCcEEEEEccchhcccHHHHHHHHHhCC-ceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeE
Q 044559 450 SVPEKRVIACIGDGSFQVTAQDVSTMLRCGQ-KTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTT 528 (585)
Q Consensus 450 A~p~r~vv~v~GDGsf~~~~~eL~ta~~~~l-pv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~ 528 (585)
+.|+++||+++|||+|+|+++||.|+.++++ |+++||+||++|++.. +.......+||.++|++||+. +++
T Consensus 236 a~p~r~Vv~i~GDGsflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~g----~q~~~~~~~d~~~iA~a~G~~----~~~ 307 (361)
T TIGR03297 236 ARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAHDSVG----GQPTVSQHLDFAQIAKACGYA----KVY 307 (361)
T ss_pred HCCCCCEEEEEChHHHHHHHHHHHHHHHhCCCCeEEEEEcCccccccC----CcCCCCCCCCHHHHHHHCCCc----eEE
Confidence 9999999999999999999999999999996 8999999999998631 111222469999999999962 578
Q ss_pred EEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCC
Q 044559 529 KVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 529 ~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
+|++.+||+++|+++++ .++|+||||.+++...
T Consensus 308 ~v~~~~eL~~al~~a~~--~~gp~lIeV~v~~g~~ 340 (361)
T TIGR03297 308 EVSTLEELETALTAASS--ANGPRLIEVKVRPGSR 340 (361)
T ss_pred EeCCHHHHHHHHHHHHh--CCCcEEEEEEecCCCc
Confidence 99999999999999986 7899999999998654
No 66
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=100.00 E-value=1.4e-36 Score=288.90 Aligned_cols=182 Identities=15% Similarity=0.262 Sum_probs=156.9
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc
Q 044559 385 EPLRVNVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG 463 (585)
Q Consensus 385 ~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG 463 (585)
.++++.++++.|++.++++++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+|+||+++|||
T Consensus 2 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG 81 (196)
T cd02013 2 NPMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDG 81 (196)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcch
Confidence 358899999999999999999999999987664 4566666677998999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeee----cCCCc--CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHH
Q 044559 464 SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI----HDGPY--NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELI 537 (585)
Q Consensus 464 sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~ 537 (585)
+|+|+++||+|+++|++|+++||+||++|++.+.. +++.+ .++.++||.++|++||+ ++++|++++||+
T Consensus 82 ~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~ 156 (196)
T cd02013 82 AWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGA-----KGITVDKPEDVG 156 (196)
T ss_pred HHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCC-----EEEEECCHHHHH
Confidence 99999999999999999999999999999984321 22222 34567999999999999 999999999999
Q ss_pred HHHHhhcC-CCCCCeEEEEEEcCCCCChHHHHHHH
Q 044559 538 EAIENATG-PKKDCLCFIEVLVHKDDTSKELLEWG 571 (585)
Q Consensus 538 ~aL~~a~~-~~~~gp~vIeV~v~~~~~~~~~~~~~ 571 (585)
++|+++++ .+.++|+||||.+++++..+..+.+.
T Consensus 157 ~al~~a~~~~~~~~p~liev~v~~~~~~~~~~~~~ 191 (196)
T cd02013 157 PALQKAIAMMAEGKTTVIEIVCDQELGDPFRRDAL 191 (196)
T ss_pred HHHHHHHhcCCCCCeEEEEEEeCcccCCchHHHhh
Confidence 99999984 33689999999999988765544433
No 67
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=100.00 E-value=2.8e-36 Score=288.63 Aligned_cols=175 Identities=20% Similarity=0.263 Sum_probs=151.0
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc
Q 044559 385 EPLRVNVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG 463 (585)
Q Consensus 385 ~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG 463 (585)
.+++++++++.|++.+|++++++.|+|++..|. .++..+++.+++.++++|+|||++|+|||+++|+|+|+||+|+|||
T Consensus 6 ~~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG 85 (202)
T cd02006 6 VPIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDY 85 (202)
T ss_pred CCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeCh
Confidence 468999999999999999999999999987664 4566666677888889999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeec----CCC-----cCC-------CCCCChHHHHHHhcCCCCCcee
Q 044559 464 SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH----DGP-----YNV-------IKNWNYTGLVDAIHNGEGKCWT 527 (585)
Q Consensus 464 sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~----~~~-----~~~-------~~~~d~~~la~a~G~~~~~~~~ 527 (585)
||+|++|||+|++||++|+++||+||++|++.++.+ ... +.. .+++||.++|++||+ ++
T Consensus 86 ~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~ 160 (202)
T cd02006 86 DFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGC-----KA 160 (202)
T ss_pred HhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCC-----EE
Confidence 999999999999999999999999999999833211 111 111 135999999999999 99
Q ss_pred EEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCCCCCh
Q 044559 528 TKVFCEEELIEAIENATG--PKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 528 ~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~~~~~ 564 (585)
.+|++++||+++|+++++ .+.++|+||||.+++++..
T Consensus 161 ~~v~~~~el~~al~~a~~~~~~~~~p~liev~i~~~~~~ 199 (202)
T cd02006 161 IRVTKPEELAAAFEQAKKLMAEHRVPVVVEAILERVTNI 199 (202)
T ss_pred EEECCHHHHHHHHHHHHHhcccCCCcEEEEEEecccccC
Confidence 999999999999999983 1268999999999988763
No 68
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=100.00 E-value=2.7e-33 Score=308.93 Aligned_cols=481 Identities=15% Similarity=0.067 Sum_probs=287.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhh
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE---PGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGG 118 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~ 118 (585)
.-|+|.++++..+.+.|++.++|+||++.+++++.|.+. .++.++++.+|.+|..||.|-+. +|.=++..|+|||+
T Consensus 3 ~~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~-aG~ra~t~ts~~Gl 81 (595)
T TIGR03336 3 ELLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAW-SGLRAFCTMKHVGL 81 (595)
T ss_pred eeecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHh-cCcceEEEccCCch
Confidence 358999999999999999999999999999999988653 36899999999999999999554 56545566899998
Q ss_pred HHHHHHHHHhh--hcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEE-EEEeCChhhHHHHHHHHHHH
Q 044559 119 LSVLNAIAGAY--SENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QAVVNNLEDAHELIDTAVST 195 (585)
Q Consensus 119 ~n~~~~l~~A~--~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~ 195 (585)
.-+.-.|..+. -.+.|++++.++++... ..+ ..++-.++.-.+.| .....+++++.+...+||++
T Consensus 82 ~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~---------~~~---~~q~d~~~~~~~~~~vl~p~~~qE~~d~~~~Af~l 149 (595)
T TIGR03336 82 NVAADPLMTLAYTGVKGGLVVVVADDPSMH---------SSQ---NEQDTRHYAKFAKIPCLEPSTPQEAKDMVKYAFEL 149 (595)
T ss_pred hhhHHHhhhhhhhcCcCceEEEEccCCCCc---------cch---hhHhHHHHHHhcCCeEECCCCHHHHHHHHHHHHHH
Confidence 76666666555 34678999999876652 111 11111122222332 34445788999999999999
Q ss_pred hhhcCCcEEEEecCCCCCCCCCCCCCCC-C-C----CcCCCCC--CChh---hHH----HHHHHHHHHHHhcCCC-----
Q 044559 196 ALKESKPVYISVACNLPAIPHPTFSREP-V-P----FSLSPKL--SNEM---GLE----AAVEAAAEFLNKAVKP----- 255 (585)
Q Consensus 196 a~~~~GPV~i~iP~dv~~~~~~~~~~~~-~-~----~~~~~~~--~~~~---~~~----~~v~~~~~~L~~a~rp----- 255 (585)
|..-+-||.+..-..+.+..+++..... . + ....+.. ..+. ... +.++++.+.....+..
T Consensus 150 ae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (595)
T TIGR03336 150 SEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEIN 229 (595)
T ss_pred HHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccC
Confidence 9988999999997766554333211110 0 0 0000000 0000 011 1222222222221111
Q ss_pred ---EEEcCCcccccchHHHHHHHHHHhCCc--eEeCCCCccccCCCCCCccccccCCC---CCCcccccccc----cCC-
Q 044559 256 ---VLVAGPKMRVAKACNAFVELADACGYA--VAVMPSAKGLVPEHHPHFIGTYWGAV---STAFFSVGYSL----LLK- 322 (585)
Q Consensus 256 ---vIi~G~g~~~~~a~~~l~~lae~~~~P--v~tt~~gkg~~~~~hp~~~g~~~g~~---~~~~~~~~~~~----~~~- 322 (585)
+.|+..|.....+.+ .++.+|+- |+.- +-+-|-+.........+.. .......+.+. +..
T Consensus 230 ~~di~iv~~G~~~~~a~e----a~~~~Gi~~~v~~~---~~i~Pld~~~i~~~~~~~~~vivvEe~~~~~~~~~~~~~~~ 302 (595)
T TIGR03336 230 GAKIGVIASGIAYNYVKE----ALERLGVDVSVLKI---GFTYPVPEGLVEEFLSGVEEVLVVEELEPVVEEQVKALAGT 302 (595)
T ss_pred CCCEEEEEcCHHHHHHHH----HHHHcCCCeEEEEe---CCCCCCCHHHHHHHHhcCCeEEEEeCCccHHHHHHHHHHHh
Confidence 344444443222333 33334542 2210 0011100000000000000 00000000000 000
Q ss_pred -CccEEEEcCCcceeccCCccccccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 044559 323 -KEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLS 401 (585)
Q Consensus 323 -~~~~i~vd~d~~~i~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~ 401 (585)
..++..+.....-+ .....+|.+.+.+.|.+. ........ ..... .........-........+++.|++.++
T Consensus 303 ~~~~v~~~G~~d~fi---~~~~~Ld~~~i~~~i~~~-~~~~~~~~-~~~~~-~~~~~r~~~~C~GCp~~~~~~~l~~~l~ 376 (595)
T TIGR03336 303 AGLNIKVHGKEDGFL---PREGELNPDIVVNALAKF-GLAPSVTH-EKPVP-KPLPVRPPSLCAGCPHRATFYAMKKVAD 376 (595)
T ss_pred cCCCeEEecccCCcc---CcccCcCHHHHHHHHHHh-CCCccccc-ccccc-cccCCCCCCCCCCCCChHHHHHHHHhcc
Confidence 00122222111000 112245677777776543 11111000 00000 0000011112233556779999999999
Q ss_pred CCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhccc-HHHHHHHHHhCC
Q 044559 402 SETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQDVSTMLRCGQ 480 (585)
Q Consensus 402 ~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~eL~ta~~~~l 480 (585)
++.+++.|+|++..|.. .|. .++.+ +++||+++|+|+|+++|.|+++||+++|||+|+|+ ++||+|++++++
T Consensus 377 ~d~ivv~D~G~~~~~~~---~p~--~~~~~--~~~mG~~~~~AiGa~~a~p~~~Vv~i~GDG~f~~~g~~eL~tav~~~~ 449 (595)
T TIGR03336 377 REAIFPSDIGCYTLGIQ---PPL--GTVDT--TLCMGASIGVASGLSKAGEKQRIVAFIGDSTFFHTGIPGLINAVYNKA 449 (595)
T ss_pred CCcEEecCcchhhcccc---CCc--cccce--eeccCchHHHHhhhhhcCCCCCEEEEeccchhhhcCHHHHHHHHHcCC
Confidence 99999999999977642 121 23322 58999999999999999999999999999999997 999999999999
Q ss_pred ceEEEEEeCCcceeeeeec-CC-Cc----CCCCCCChHHHHHHhcCCCCCceeEEEcCH---HHHHHHHHhhcCCCCCCe
Q 044559 481 KTIIFLINNGGYTIEVEIH-DG-PY----NVIKNWNYTGLVDAIHNGEGKCWTTKVFCE---EELIEAIENATGPKKDCL 551 (585)
Q Consensus 481 pv~ivV~NN~~~~~~~~~~-~~-~~----~~~~~~d~~~la~a~G~~~~~~~~~~V~~~---~eL~~aL~~a~~~~~~gp 551 (585)
|+++||+||++|+|...+. .+ .+ ....++||.++|++||+ ++.+|.++ ++|.++|+++++ .++|
T Consensus 450 ~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~-----~~~~v~~~~~l~~l~~al~~a~~--~~gp 522 (595)
T TIGR03336 450 NITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGV-----EFVEVVDPLNVKETIEVFKAALA--AEGV 522 (595)
T ss_pred CeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCC-----CEEEEeCcCCHHHHHHHHHHHHh--cCCC
Confidence 9999999999999943221 11 11 12357999999999999 89999887 456889999986 7899
Q ss_pred EEEEEEcCCCC
Q 044559 552 CFIEVLVHKDD 562 (585)
Q Consensus 552 ~vIeV~v~~~~ 562 (585)
.||++..+-..
T Consensus 523 ~li~v~~~C~l 533 (595)
T TIGR03336 523 SVIIAKQPCVL 533 (595)
T ss_pred EEEEEcccCcc
Confidence 99999876543
No 69
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=100.00 E-value=7.2e-35 Score=273.87 Aligned_cols=176 Identities=49% Similarity=0.767 Sum_probs=156.2
Q ss_pred CcCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchh
Q 044559 386 PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSF 465 (585)
Q Consensus 386 ~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf 465 (585)
++++.++++.|++.++++++++.|+|++.+...++...++.+++.+.++|+||+++|+|+|++++.|+++|++++|||+|
T Consensus 1 ~l~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f 80 (183)
T cd02005 1 PLTQARLWQQVQNFLKPNDILVAETGTSWFGALDLKLPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSF 80 (183)
T ss_pred CCCHHHHHHHHHHhcCCCCEEEECCchHHHhhhhccCCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchh
Confidence 47889999999999999999999999986544556666667799999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCC--CcCCCCCCChHHHHHHhc----CCCCCceeEEEcCHHHHHHH
Q 044559 466 QVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDG--PYNVIKNWNYTGLVDAIH----NGEGKCWTTKVFCEEELIEA 539 (585)
Q Consensus 466 ~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~--~~~~~~~~d~~~la~a~G----~~~~~~~~~~V~~~~eL~~a 539 (585)
+|+++||+|+++|++|+++||+||++|++.+..+.. .+.++.++||.++|++|| + ++.+|++.+||+++
T Consensus 81 ~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~-----~~~~v~~~~el~~a 155 (183)
T cd02005 81 QMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGG-----LSFRVKTEGELDEA 155 (183)
T ss_pred hccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccc-----cEEEecCHHHHHHH
Confidence 999999999999999999999999999996544432 345556799999999999 6 89999999999999
Q ss_pred HHhhcCCCCCCeEEEEEEcCCCCChHHH
Q 044559 540 IENATGPKKDCLCFIEVLVHKDDTSKEL 567 (585)
Q Consensus 540 L~~a~~~~~~gp~vIeV~v~~~~~~~~~ 567 (585)
|+++++ ..++|+||||.+++++.++.|
T Consensus 156 l~~a~~-~~~~p~liev~~~~~~~~~~~ 182 (183)
T cd02005 156 LKDALF-NRDKLSLIEVILPKDDAPEAL 182 (183)
T ss_pred HHHHHh-cCCCcEEEEEEcCcccCCccc
Confidence 999984 358999999999999988765
No 70
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=100.00 E-value=7.7e-35 Score=272.16 Aligned_cols=169 Identities=15% Similarity=0.262 Sum_probs=147.7
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcc
Q 044559 389 VNVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQV 467 (585)
Q Consensus 389 ~~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~ 467 (585)
|.+++++|++.+++++++++|+|++..|. .++...++.+++.+.++|+|||++|+|+|+++|+|+++||+|+|||||+|
T Consensus 1 p~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m 80 (177)
T cd02010 1 PQRIVHDLRAVMGDDDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMM 80 (177)
T ss_pred CHHHHHHHHHHCCCCcEEEecCcHHHHHHHHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHh
Confidence 35789999999999999999999987664 34555556679999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCceEEEEEeCCcceeeeeec---CC--CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHh
Q 044559 468 TAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH---DG--PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIEN 542 (585)
Q Consensus 468 ~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~---~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~ 542 (585)
+++||+|++||++|+++||+||++|++.+..+ .. .+.++.++||.++|++||+ ++.+|++++||+++|++
T Consensus 81 ~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~ 155 (177)
T cd02010 81 NSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGA-----KGYRIESADDLLPVLER 155 (177)
T ss_pred HHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHH
Confidence 99999999999999999999999999843211 11 2344567899999999999 99999999999999999
Q ss_pred hcCCCCCCeEEEEEEcCCCCCh
Q 044559 543 ATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 543 a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
+++ .++|+||||.+++.+.+
T Consensus 156 a~~--~~~p~liev~~~~~~~~ 175 (177)
T cd02010 156 ALA--ADGVHVIDCPVDYSENI 175 (177)
T ss_pred HHh--CCCCEEEEEEecccccC
Confidence 996 88999999999986543
No 71
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=100.00 E-value=3.8e-34 Score=270.48 Aligned_cols=171 Identities=23% Similarity=0.358 Sum_probs=149.5
Q ss_pred cCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchh
Q 044559 387 LRVNVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSF 465 (585)
Q Consensus 387 i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf 465 (585)
+++.++++.|++.++++++++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||++++.|+++||+++|||+|
T Consensus 1 ~~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f 80 (186)
T cd02015 1 IKPQEVIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSF 80 (186)
T ss_pred CCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHH
Confidence 4678899999999999999999999986654 456666667799999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCceEEEEEeCCcceeeeee----cCCCcC--C-CCCCChHHHHHHhcCCCCCceeEEEcCHHHHHH
Q 044559 466 QVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI----HDGPYN--V-IKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIE 538 (585)
Q Consensus 466 ~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~~~~--~-~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~ 538 (585)
+|+++||+|+++|++|+++||+||++|++.+.. +.+.+. . .+++||.++|++||+ ++.+|++.+||++
T Consensus 81 ~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~ 155 (186)
T cd02015 81 QMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGI-----KGLRVEKPEELEA 155 (186)
T ss_pred hccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCC-----ceEEeCCHHHHHH
Confidence 999999999999999999999999999984322 122221 2 257999999999999 9999999999999
Q ss_pred HHHhhcCCCCCCeEEEEEEcCCCCCh
Q 044559 539 AIENATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 539 aL~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
+|+++++ .++|+||||.+++++.+
T Consensus 156 al~~a~~--~~~p~liev~~~~~~~~ 179 (186)
T cd02015 156 ALKEALA--SDGPVLLDVLVDPEENV 179 (186)
T ss_pred HHHHHHh--CCCCEEEEEEeCCCccc
Confidence 9999986 78999999999986654
No 72
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=100.00 E-value=9.4e-35 Score=278.36 Aligned_cols=174 Identities=20% Similarity=0.358 Sum_probs=149.9
Q ss_pred HHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccH
Q 044559 391 VLFQHIQKMLSSETAVIAETGDSWFNCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTA 469 (585)
Q Consensus 391 ~~~~~l~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~ 469 (585)
++++.|++.+++++++++|+|++..|.. +++..++.+++.+.++|+|||++|+|||+++|+|+++||+++|||+|+|+.
T Consensus 3 ~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~ 82 (205)
T cd02003 3 EVLGALNEAIGDDDVVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH 82 (205)
T ss_pred hHHHHHHHhCCCCCEEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH
Confidence 5789999999999999999999887653 455556667998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEEeCCcceeeeeec----CCC----c-----------CCCCCCChHHHHHHhcCCCCCceeEEE
Q 044559 470 QDVSTMLRCGQKTIIFLINNGGYTIEVEIH----DGP----Y-----------NVIKNWNYTGLVDAIHNGEGKCWTTKV 530 (585)
Q Consensus 470 ~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~----~~~----~-----------~~~~~~d~~~la~a~G~~~~~~~~~~V 530 (585)
+||+|++||++|+++||+||++|++.+..+ ... + ...+++||.++|++||+ ++.+|
T Consensus 83 ~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v 157 (205)
T cd02003 83 SEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGA-----RVEKV 157 (205)
T ss_pred HHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCC-----EEEEE
Confidence 999999999999999999999999843211 111 1 12356999999999999 99999
Q ss_pred cCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHH
Q 044559 531 FCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWG 571 (585)
Q Consensus 531 ~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~ 571 (585)
++++||+++|+++++ .++|+||||.+++.+.++....|+
T Consensus 158 ~~~~el~~al~~a~~--~~gp~lIeV~v~~~~~~~~~~~~~ 196 (205)
T cd02003 158 KTIEELKAALAKAKA--SDRTTVIVIKTDPKSMTPGYGSWW 196 (205)
T ss_pred CCHHHHHHHHHHHHh--CCCCEEEEEEeeccccCCCCCCeE
Confidence 999999999999986 899999999999988776554443
No 73
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=100.00 E-value=5.7e-34 Score=266.13 Aligned_cols=163 Identities=18% Similarity=0.128 Sum_probs=142.7
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCccccccc-cccc-cCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhc
Q 044559 389 VNVLFQHIQKMLSSETAVIAETGDSWFNCQ-KLKL-PKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQ 466 (585)
Q Consensus 389 ~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~-~~~~-~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~ 466 (585)
...+++.|++.+|++.+++.|+|++..|.. +++. +++.+++.+.++++||+++|+|||+++|. +|+||+++|||||+
T Consensus 3 ~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-~~~Vv~i~GDGsf~ 81 (175)
T cd02009 3 EPALARALPDHLPEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-DKPTVLLTGDLSFL 81 (175)
T ss_pred hHHHHHHHHHhCCCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhcC-CCCEEEEEehHHHH
Confidence 456899999999999999999999987754 4555 56677999999999999999999999998 99999999999999
Q ss_pred ccHHHHHHHHHhCCceEEEEEeCCcceeeeeecC----CCcCC-C---CCCChHHHHHHhcCCCCCceeEEEcCHHHHHH
Q 044559 467 VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD----GPYNV-I---KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIE 538 (585)
Q Consensus 467 ~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~----~~~~~-~---~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~ 538 (585)
|+++||+|++||++|+++||+||++|++.+.... ..+.. + .++||.++|++||+ ++.+|++++||++
T Consensus 82 m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~ 156 (175)
T cd02009 82 HDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGL-----EYRRVSSLDELEQ 156 (175)
T ss_pred HhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCC-----CeeeCCCHHHHHH
Confidence 9999999999999999999999999998443221 12211 1 37999999999999 9999999999999
Q ss_pred HHHhhcCCCCCCeEEEEEEcC
Q 044559 539 AIENATGPKKDCLCFIEVLVH 559 (585)
Q Consensus 539 aL~~a~~~~~~gp~vIeV~v~ 559 (585)
+|+++++ .++|+||||.++
T Consensus 157 al~~a~~--~~~p~lIev~v~ 175 (175)
T cd02009 157 ALESALA--QDGPHVIEVKTD 175 (175)
T ss_pred HHHHHHh--CCCCEEEEEeCC
Confidence 9999986 899999999986
No 74
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=100.00 E-value=5.4e-33 Score=260.61 Aligned_cols=171 Identities=16% Similarity=0.242 Sum_probs=150.5
Q ss_pred cCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchh
Q 044559 387 LRVNVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSF 465 (585)
Q Consensus 387 i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf 465 (585)
+++..+++.|++.++++++++.|+|++..+. .++..+++.+++.+.++|+|||++|+|+|+++++++++|++++|||||
T Consensus 2 ~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f 81 (178)
T cd02014 2 IHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGF 81 (178)
T ss_pred CCHHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHH
Confidence 6789999999999999999999999987654 456666667799999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCceEEEEEeCCcceeeeee----cCCCc-CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHH
Q 044559 466 QVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI----HDGPY-NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAI 540 (585)
Q Consensus 466 ~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~~~-~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL 540 (585)
+|+.+||+|++++++|+++||+||++|++.+.. ....+ +++.++||.++|++||+ +++++++++||+++|
T Consensus 82 ~~~~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~~l 156 (178)
T cd02014 82 AMLMGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGI-----KGIRVEDPDELEAAL 156 (178)
T ss_pred HhhHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHH
Confidence 999999999999999999999999999983211 11122 34567899999999999 999999999999999
Q ss_pred HhhcCCCCCCeEEEEEEcCCCCCh
Q 044559 541 ENATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 541 ~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
+++++ .++|+||||.+++++.+
T Consensus 157 ~~a~~--~~~p~liev~~~~~~~~ 178 (178)
T cd02014 157 DEALA--ADGPVVIDVVTDPNEPP 178 (178)
T ss_pred HHHHh--CCCCEEEEEEeCCCCCC
Confidence 99986 78999999999987653
No 75
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=100.00 E-value=6.9e-33 Score=258.74 Aligned_cols=164 Identities=20% Similarity=0.304 Sum_probs=143.5
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcc
Q 044559 389 VNVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQV 467 (585)
Q Consensus 389 ~~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~ 467 (585)
|+++++.|++.+|++++++.|+|++..|. .++..+++.+++.++++|+||+++|+|||++++.|+++|++++|||+|+|
T Consensus 1 p~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~ 80 (172)
T cd02004 1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGF 80 (172)
T ss_pred CHHHHHHHHHHCCCCcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcC
Confidence 35689999999999999999999887554 34555566668888899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCceEEEEEeCCcceeeeeecC----C---CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHH
Q 044559 468 TAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD----G---PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAI 540 (585)
Q Consensus 468 ~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~----~---~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL 540 (585)
+++||+|++++++|+++||+||++|++.+..+. + ...++..+||.++|++||+ ++.+|++.+||+++|
T Consensus 81 ~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al 155 (172)
T cd02004 81 SGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGG-----KGELVTTPEELKPAL 155 (172)
T ss_pred CHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHH
Confidence 999999999999999999999999998433221 1 1234567999999999999 999999999999999
Q ss_pred HhhcCCCCCCeEEEEEEcC
Q 044559 541 ENATGPKKDCLCFIEVLVH 559 (585)
Q Consensus 541 ~~a~~~~~~gp~vIeV~v~ 559 (585)
+++++ .++|+||||.++
T Consensus 156 ~~a~~--~~~p~liev~i~ 172 (172)
T cd02004 156 KRALA--SGKPALINVIID 172 (172)
T ss_pred HHHHH--cCCCEEEEEEcC
Confidence 99986 789999999985
No 76
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=100.00 E-value=2.5e-32 Score=250.78 Aligned_cols=153 Identities=30% Similarity=0.419 Sum_probs=142.0
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHH
Q 044559 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIA 126 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~ 126 (585)
++|++.|+++||+++||+||+.+.+|++++. ++++++|.++||.+|++||+||+|++|+ +||++|+|||++|+++++.
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~-~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~ 79 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALA-RSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA 79 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH
Confidence 4799999999999999999999999999998 5689999999999999999999999998 9999999999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-CCcEEE
Q 044559 127 GAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-SKPVYI 205 (585)
Q Consensus 127 ~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~GPV~i 205 (585)
+|+.+++|||+|+|+++....++.. + |..||.++++++|||+.++.+++++.+.+++|++.|.++ +|||||
T Consensus 80 ~A~~~~~Pll~i~~~~~~~~~~~~~-----~---q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l 151 (155)
T cd07035 80 NAYLDSIPLLVITGQRPTAGEGRGA-----F---QEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVAL 151 (155)
T ss_pred HHHhhCCCEEEEeCCCccccccCCc-----c---cccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999988665431 1 346889999999999999999999999999999999987 799999
Q ss_pred EecC
Q 044559 206 SVAC 209 (585)
Q Consensus 206 ~iP~ 209 (585)
+||.
T Consensus 152 ~ip~ 155 (155)
T cd07035 152 DLPK 155 (155)
T ss_pred EecC
Confidence 9984
No 77
>PRK06163 hypothetical protein; Provisional
Probab=99.97 E-value=9.5e-32 Score=254.49 Aligned_cols=164 Identities=21% Similarity=0.243 Sum_probs=139.1
Q ss_pred CCCcCHHHHHHHHHhhCCCCCEEEecCCccc--cccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEc
Q 044559 384 KEPLRVNVLFQHIQKMLSSETAVIAETGDSW--FNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIG 461 (585)
Q Consensus 384 ~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~--~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~G 461 (585)
...++.+++++.|.+.+++++++++|+|++. .|... . .+.+++ .+|+|||++|+|+|+++|+|+++||+++|
T Consensus 10 ~~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~-~--~~~~~~---~~GsMG~glpaAiGaalA~p~r~Vv~i~G 83 (202)
T PRK06163 10 AKVMNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAG-Q--RPQNFY---MLGSMGLAFPIALGVALAQPKRRVIALEG 83 (202)
T ss_pred CCCcCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhh-c--CCCCeE---eecccccHHHHHHHHHHhCCCCeEEEEEc
Confidence 3568899999999999999999999999743 45432 1 222355 38999999999999999999999999999
Q ss_pred cchhcccHHHHHHHHHh-CCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCce-eEEEcCHHHHHHH
Q 044559 462 DGSFQVTAQDVSTMLRC-GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCW-TTKVFCEEELIEA 539 (585)
Q Consensus 462 DGsf~~~~~eL~ta~~~-~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~-~~~V~~~~eL~~a 539 (585)
||||+|+++||+|+++| ++|+++||+||++|++.... .+....++||.++|++||+ + +++|++.+||+++
T Consensus 84 DG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~---~~~~~~~~Df~~lA~a~G~-----~~~~~v~~~~el~~a 155 (202)
T PRK06163 84 DGSLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGGQ---PTLTSQTVDVVAIARGAGL-----ENSHWAADEAHFEAL 155 (202)
T ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCc---cCCCCCCCCHHHHHHHCCC-----ceEEEeCCHHHHHHH
Confidence 99999999999999987 68999999999999984221 2223356999999999999 7 6899999999999
Q ss_pred HHhhcCCCCCCeEEEEEEcCCCCC
Q 044559 540 IENATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 540 L~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
|+++++ .++|.||||.+++...
T Consensus 156 l~~a~~--~~~p~lIeV~i~~~~~ 177 (202)
T PRK06163 156 VDQALS--GPGPSFIAVRIDDKPG 177 (202)
T ss_pred HHHHHh--CCCCEEEEEEecCCCC
Confidence 999986 7999999999997553
No 78
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.97 E-value=3.5e-31 Score=248.90 Aligned_cols=164 Identities=26% Similarity=0.366 Sum_probs=141.6
Q ss_pred cCHHHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchh
Q 044559 387 LRVNVLFQHIQKMLSSETAVIAETGDSWFNCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSF 465 (585)
Q Consensus 387 i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf 465 (585)
+++.++++.|++.+|++++++.|+|++..|.. +++..++.+++.+.+ |+||+++|+|+|+++|.|+++|++++|||+|
T Consensus 1 ~~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG~f 79 (178)
T cd02002 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDGSF 79 (178)
T ss_pred CCHHHHHHHHHhhCCCCeEEEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCchh
Confidence 46888999999999999999999998876654 344445566888888 9999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCceEEEEEeCCcceeeeeec----CC-----C--cC--CCCCCChHHHHHHhcCCCCCceeEEEcC
Q 044559 466 QVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH----DG-----P--YN--VIKNWNYTGLVDAIHNGEGKCWTTKVFC 532 (585)
Q Consensus 466 ~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~----~~-----~--~~--~~~~~d~~~la~a~G~~~~~~~~~~V~~ 532 (585)
+|+++||+|++++++|+++||+||++|++.+..+ .. . .. ..+.+||.++|++||+ ++.+|++
T Consensus 80 ~~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~ 154 (178)
T cd02002 80 MYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGV-----EAERVET 154 (178)
T ss_pred hccHHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCC-----ceEEeCC
Confidence 9999999999999999999999999999843211 10 1 11 1256999999999999 8999999
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEEEc
Q 044559 533 EEELIEAIENATGPKKDCLCFIEVLV 558 (585)
Q Consensus 533 ~~eL~~aL~~a~~~~~~gp~vIeV~v 558 (585)
.+||+++|+++++ .++|+||||.+
T Consensus 155 ~~el~~al~~a~~--~~~p~vi~v~v 178 (178)
T cd02002 155 PEELDEALREALA--EGGPALIEVVV 178 (178)
T ss_pred HHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 9999999999986 78999999975
No 79
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.97 E-value=1.3e-30 Score=238.12 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=131.8
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccH
Q 044559 390 NVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTA 469 (585)
Q Consensus 390 ~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~ 469 (585)
+.+++.|.+.+ +|++++.|+|++..+.. .....+.+|+. +|+||+++|+|+|++++.| ++||+++|||||+|++
T Consensus 2 ~~~~~~l~~~l-~d~~vv~d~G~~~~~~~-~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~~-~~Vv~i~GDG~f~m~~ 75 (157)
T cd02001 2 IAAIAEIIEAS-GDTPIVSTTGYASRELY-DVQDRDGHFYM---LGSMGLAGSIGLGLALGLS-RKVIVVDGDGSLLMNP 75 (157)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCHhHHHHH-HhhcCCCCEEe---ecchhhHHHHHHHHHhcCC-CcEEEEECchHHHhcc
Confidence 45788999999 79999999999877652 22233344764 9999999999999999986 8999999999999999
Q ss_pred HHHHHHHHh-CCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCC
Q 044559 470 QDVSTMLRC-GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKK 548 (585)
Q Consensus 470 ~eL~ta~~~-~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~ 548 (585)
+||+|++++ ++|+++||+||++|++..... .+ ...+||.++|++||+ ++++|++++||+++|+++++ .
T Consensus 76 ~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~--~~--~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~ 144 (157)
T cd02001 76 GVLLTAGEFTPLNLILVVLDNRAYGSTGGQP--TP--SSNVNLEAWAAACGY-----LVLSAPLLGGLGSEFAGLLA--T 144 (157)
T ss_pred cHHHHHHHhcCCCEEEEEEeCccccccCCcC--CC--CCCCCHHHHHHHCCC-----ceEEcCCHHHHHHHHHHHHh--C
Confidence 999999999 599999999999999843111 11 136999999999999 89999999999999999996 7
Q ss_pred CCeEEEEEEcCCC
Q 044559 549 DCLCFIEVLVHKD 561 (585)
Q Consensus 549 ~gp~vIeV~v~~~ 561 (585)
++|+||||.+++.
T Consensus 145 ~gp~vi~v~i~~~ 157 (157)
T cd02001 145 TGPTLLHAPIAPG 157 (157)
T ss_pred CCCEEEEEEecCC
Confidence 8999999999763
No 80
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=99.97 E-value=5.6e-30 Score=236.40 Aligned_cols=154 Identities=20% Similarity=0.097 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc----CCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHH
Q 044559 46 LGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIA----EPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 121 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~----~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~ 121 (585)
++|+|++.|+++||+++||+||+.+.++++++.+ ..+|++|.++||++|++||+||+|.+++ +|++|+|||++|+
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~-v~~~~~gpG~~n~ 79 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR-AMTATSGPGLNLM 79 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc-EEEeeCcchHHHH
Confidence 5799999999999999999999999999999964 4589999999999999999999998888 9999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCC
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK 201 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~G 201 (585)
+++|++|+.+++|||+|+|+++....+.. + .. .+..|+..++++ +||+.++.+++++++++++|++.|.++++
T Consensus 80 ~~~l~~a~~~~~P~v~i~g~~~~~~~~~~---~-~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~ 152 (160)
T cd07034 80 AEALYLAAGAELPLVIVVAQRPGPSTGLP---K-PD--QSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYRL 152 (160)
T ss_pred HHHHHHHHhCCCCEEEEEeeCCCCCCCCC---C-cC--cHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999888744320 1 11 134578899999 99999999999999999999999999889
Q ss_pred cEEEEe
Q 044559 202 PVYISV 207 (585)
Q Consensus 202 PV~i~i 207 (585)
||+|-+
T Consensus 153 Pv~l~~ 158 (160)
T cd07034 153 PVIVLS 158 (160)
T ss_pred CEEEEc
Confidence 999865
No 81
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.97 E-value=8e-30 Score=238.26 Aligned_cols=157 Identities=21% Similarity=0.254 Sum_probs=131.3
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccH
Q 044559 390 NVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTA 469 (585)
Q Consensus 390 ~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~ 469 (585)
+.+++.|++.+| ++++++|+|.+..+...+ ...+.+++. +|+||+++|+|+|+|+|+ +++||+++|||+|+|++
T Consensus 2 ~~~~~~l~~~l~-d~iiv~d~G~~~~~~~~~-~~~~~~~~~---~gsmG~~lpaAiGa~la~-~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE-DELVVSNIGVPSKELYAI-RDRPLNFYM---LGSMGLASSIGLGLALAT-DRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC-CCEEEecCCHhHHHHHhh-hcCCCCeee---ccccccHHHHHHHHHHcC-CCcEEEEEcchHHHhhh
Confidence 468899999998 999999999875432222 123334553 899999999999999999 99999999999999999
Q ss_pred HHHHHHHHhC-CceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEE-EcCHHHHHHHHHhhcCCC
Q 044559 470 QDVSTMLRCG-QKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTK-VFCEEELIEAIENATGPK 547 (585)
Q Consensus 470 ~eL~ta~~~~-lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-V~~~~eL~~aL~~a~~~~ 547 (585)
+||+|+++|+ +|+++||+||++|++.... .... ..++||.++|++||+ ++.+ |+++++|+++|+ +++
T Consensus 76 ~el~ta~~~~~~pv~~vV~NN~~yg~~~~q--~~~~-~~~~d~~~lA~a~G~-----~~~~~v~~~~~l~~al~-a~~-- 144 (181)
T TIGR03846 76 GVLPTIAAESPKNLILVILDNGAYGSTGNQ--PTPA-SRRTDLELVAKAAGI-----RNVEKVADEEELRDALK-ALA-- 144 (181)
T ss_pred hHHHHHHHhCCCCeEEEEEeCCccccccCc--CCCC-CCCCCHHHHHHHCCC-----CeEEEeCCHHHHHHHHH-HHc--
Confidence 9999999999 5999999999999985321 1111 147899999999999 8888 999999999997 775
Q ss_pred CCCeEEEEEEcCCCCC
Q 044559 548 KDCLCFIEVLVHKDDT 563 (585)
Q Consensus 548 ~~gp~vIeV~v~~~~~ 563 (585)
.++|.||||.+++++.
T Consensus 145 ~~~p~li~v~~~~~~~ 160 (181)
T TIGR03846 145 MKGPTFIHVKVKPGNA 160 (181)
T ss_pred CCCCEEEEEEeCCCCC
Confidence 7899999999998764
No 82
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.96 E-value=1.3e-29 Score=238.45 Aligned_cols=161 Identities=23% Similarity=0.259 Sum_probs=133.7
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcccccccccc-cc---CCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchh
Q 044559 390 NVLFQHIQKMLSSETAVIAETGDSWFNCQKLK-LP---KGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSF 465 (585)
Q Consensus 390 ~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~-~~---~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf 465 (585)
.++++.|++.+|++++++.|.|.++...+.+. .+ .+.+|+. .|+|||++|+|+|++++.|+++|++|+|||+|
T Consensus 2 ~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~---~g~mG~~lpaAiGaala~p~~~Vv~i~GDG~f 78 (188)
T cd03371 2 EDAIEIVLSRAPATAAVVSTTGMTSRELFELRDRPGGGHAQDFLT---VGSMGHASQIALGIALARPDRKVVCIDGDGAA 78 (188)
T ss_pred HHHHHHHHhhcCCCCEEEECCCcchHHHHHhhcCCCCCccCceee---cCccccHHHHHHHHHHhCCCCcEEEEeCCcHH
Confidence 35789999999999999999997754222222 12 1234554 39999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCC-ceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCcee-EEEcCHHHHHHHHHhh
Q 044559 466 QVTAQDVSTMLRCGQ-KTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWT-TKVFCEEELIEAIENA 543 (585)
Q Consensus 466 ~~~~~eL~ta~~~~l-pv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~-~~V~~~~eL~~aL~~a 543 (585)
+|+++||+|++++++ |+++||+||++|++.... .....++||.++|++||+ ++ .+|++.+||+++|+++
T Consensus 79 ~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~----~~~~~~~d~~~~A~a~G~-----~~~~~v~~~~el~~al~~a 149 (188)
T cd03371 79 LMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQ----PTVSFDVSLPAIAKACGY-----RAVYEVPSLEELVAALAKA 149 (188)
T ss_pred HhhccHHHHHHHcCCCCcEEEEEeCchhhccCCc----CCCCCCCCHHHHHHHcCC-----ceEEecCCHHHHHHHHHHH
Confidence 999999999999997 799999999999984211 111236899999999999 76 5899999999999999
Q ss_pred cCCCCCCeEEEEEEcCCCCCh
Q 044559 544 TGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 544 ~~~~~~gp~vIeV~v~~~~~~ 564 (585)
++ .++|+||||.+++.+.+
T Consensus 150 ~~--~~~p~lIev~~~~~~~~ 168 (188)
T cd03371 150 LA--ADGPAFIEVKVRPGSRS 168 (188)
T ss_pred Hh--CCCCEEEEEEecCCCCC
Confidence 86 78999999999988764
No 83
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.96 E-value=4.5e-30 Score=235.07 Aligned_cols=141 Identities=28% Similarity=0.449 Sum_probs=123.0
Q ss_pred cCCccccccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEE
Q 044559 409 ETGDSWFNCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLI 487 (585)
Q Consensus 409 d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~ 487 (585)
|+|++..|.. ++...++.+++.+.++++||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++|+++|+++||+
T Consensus 1 D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~ 80 (153)
T PF02775_consen 1 DIGCHTMWAAQYLRVRRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVL 80 (153)
T ss_dssp -SSHHHHHHHHHSCCSSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEE
T ss_pred CcChhHHHHHHhcCcCCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEEEE
Confidence 7899988754 456667778999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcceeeeeec----CCCc--C---CCCCCChHHHHHHhcCCCCCceeEEEcCH--HHHHHHHHhhcCCCCCCeEEEEE
Q 044559 488 NNGGYTIEVEIH----DGPY--N---VIKNWNYTGLVDAIHNGEGKCWTTKVFCE--EELIEAIENATGPKKDCLCFIEV 556 (585)
Q Consensus 488 NN~~~~~~~~~~----~~~~--~---~~~~~d~~~la~a~G~~~~~~~~~~V~~~--~eL~~aL~~a~~~~~~gp~vIeV 556 (585)
||++|++.+... .+.+ . .++++||.++|++||+ ++.+|++. +||+++|+++++ .++|+||||
T Consensus 81 nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~~el~~al~~a~~--~~gp~vIeV 153 (153)
T PF02775_consen 81 NNGGYGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGI-----KGARVTTPDPEELEEALREALE--SGGPAVIEV 153 (153)
T ss_dssp ESSBSHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTS-----EEEEESCHSHHHHHHHHHHHHH--SSSEEEEEE
T ss_pred eCCcceEeccccccCcCcccccccccccccCCHHHHHHHcCC-----cEEEEccCCHHHHHHHHHHHHh--CCCcEEEEc
Confidence 999999943221 1111 1 2678999999999999 99999998 999999999996 999999998
No 84
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.96 E-value=2.9e-28 Score=223.61 Aligned_cols=154 Identities=27% Similarity=0.336 Sum_probs=140.2
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHHHHH
Q 044559 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 127 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l~~ 127 (585)
++|++.|+++||+++||+||+...++++++.+.++++++.++||++|++||+||+|.+++++|++++|||++|+++++.+
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~~ 80 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLAD 80 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHHH
Confidence 37899999999999999999999999999976678999999999999999999999999888999999999999999999
Q ss_pred hhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEe
Q 044559 128 AYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISV 207 (585)
Q Consensus 128 A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~i 207 (585)
|+.+++|||+|+++++....+.+ . +|..+|..++++++||...++++++..+.+.+|++.|.+++|||+|++
T Consensus 81 a~~~~~Pvl~i~~~~~~~~~~~~-----~---~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 81 AAAEHLPVVFLIGARGISAQAKQ-----T---FQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHhcCCCEEEEeCCCChhhhccC-----c---ccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 99999999999999887643322 1 234578999999999999999999999999999999988899999999
Q ss_pred cC
Q 044559 208 AC 209 (585)
Q Consensus 208 P~ 209 (585)
|.
T Consensus 153 p~ 154 (154)
T cd06586 153 PR 154 (154)
T ss_pred cC
Confidence 84
No 85
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.96 E-value=2.2e-28 Score=229.23 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=133.0
Q ss_pred CcCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchh
Q 044559 386 PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSF 465 (585)
Q Consensus 386 ~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf 465 (585)
......+++.|++.++++++++.|+|++..|... +. +++ .++|+||+++|+|+|+++|.|+++|++++|||+|
T Consensus 9 gc~~~~~~~~l~~~l~~~~iv~~D~G~~~~~~~~---~~--~~~--~~~g~mG~gl~~AiGa~la~p~~~Vv~i~GDG~f 81 (178)
T cd02008 9 GCPHRPSFYALRKAFKKDSIVSGDIGCYTLGALP---PL--NAI--DTCTCMGASIGVAIGMAKASEDKKVVAVIGDSTF 81 (178)
T ss_pred CCCChHHHHHHHHHhcCCeEEecCcCcccccccC---Ch--hhc--cccccCccHHHHHhhHHhhCCCCCEEEEecChHH
Confidence 3456678999999999999999999998776531 11 122 3689999999999999999999999999999999
Q ss_pred ccc-HHHHHHHHHhCCceEEEEEeCCcceeeeeec--CCC--c-CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHH--
Q 044559 466 QVT-AQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGP--Y-NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELI-- 537 (585)
Q Consensus 466 ~~~-~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~--~~~--~-~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~-- 537 (585)
+|+ ++||+|+++|++|+++||+||++|++...+. ... + ....++||.++|++||+ ++++|++.+||+
T Consensus 82 ~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~~ 156 (178)
T cd02008 82 FHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGV-----KRVVVVDPYDLKAI 156 (178)
T ss_pred hhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCC-----CEEEecCccCHHHH
Confidence 999 7999999999999999999999999843221 111 1 22346899999999999 999999888887
Q ss_pred -HHHHhhcCCCCCCeEEEEEEc
Q 044559 538 -EAIENATGPKKDCLCFIEVLV 558 (585)
Q Consensus 538 -~aL~~a~~~~~~gp~vIeV~v 558 (585)
++|+++++ .++|.||+|..
T Consensus 157 ~~al~~a~~--~~gp~lI~v~~ 176 (178)
T cd02008 157 REELKEALA--VPGVSVIIAKR 176 (178)
T ss_pred HHHHHHHHh--CCCCEEEEEeC
Confidence 88899986 78999999975
No 86
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.95 E-value=6.5e-28 Score=228.34 Aligned_cols=159 Identities=18% Similarity=0.126 Sum_probs=125.3
Q ss_pred HHHHHHHHh--hCCCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccch-hc
Q 044559 390 NVLFQHIQK--MLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGS-FQ 466 (585)
Q Consensus 390 ~~~~~~l~~--~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGs-f~ 466 (585)
+.+.+++.+ ..|+|++++.|+|++.+...++.. +..+++||+++|+|+|+++|+|+|+||+++|||| |+
T Consensus 12 ~~~~~~~~~~~~~~~d~ii~~D~G~~~~~~~~~~~--------~~~~g~mG~glpaAiGa~la~p~r~Vv~i~GDGs~f~ 83 (193)
T cd03375 12 KALAKALAELGIDPEKVVVVSGIGCSSRLPYYFNT--------YGFHTLHGRALAVATGVKLANPDLTVIVVSGDGDLAA 83 (193)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCChhceehhhccc--------cchhhhhccHHHHHHHHHHhCCCCeEEEEeccchHhh
Confidence 344555543 246789999999987533222221 2235899999999999999999999999999999 57
Q ss_pred ccHHHHHHHHHhCCceEEEEEeCCcceeeeeec-----CCC------cCC-CCCCChHHHHHHhcCCCCCceeE---EEc
Q 044559 467 VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH-----DGP------YNV-IKNWNYTGLVDAIHNGEGKCWTT---KVF 531 (585)
Q Consensus 467 ~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----~~~------~~~-~~~~d~~~la~a~G~~~~~~~~~---~V~ 531 (585)
|+++||+|++||++|+++||+||++|++.+.+. .+. +.. .+.+||.++|++||+ ++. +|+
T Consensus 84 m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~~~~~~~v~ 158 (193)
T cd03375 84 IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGA-----TFVARGFSG 158 (193)
T ss_pred ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCC-----CEEEEEecC
Confidence 999999999999999999999999999943221 111 111 235899999999999 774 799
Q ss_pred CHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCC
Q 044559 532 CEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 532 ~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
+++||+++|+++++ .++|+||||.++--..
T Consensus 159 ~~~el~~al~~al~--~~gp~vIev~~~C~~~ 188 (193)
T cd03375 159 DIKQLKEIIKKAIQ--HKGFSFVEVLSPCPTF 188 (193)
T ss_pred CHHHHHHHHHHHHh--cCCCEEEEEECCCCCC
Confidence 99999999999996 8999999999875433
No 87
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.95 E-value=8.3e-28 Score=224.81 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=131.5
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccH
Q 044559 390 NVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTA 469 (585)
Q Consensus 390 ~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~ 469 (585)
+.+++.|++.+| ++++++|+|++..+...+. ..+.+++ .+|+||+++|+|+|+++|.| ++|++++|||+|+|++
T Consensus 2 ~~~~~~l~~~~~-~~~vv~d~G~~~~~~~~~~-~~~~~~~---~~g~mG~~lp~AiGaala~~-~~vv~i~GDG~f~m~~ 75 (179)
T cd03372 2 RDAIKTLIADLK-DELVVSNIGFPSKELYAAG-DRPLNFY---MLGSMGLASSIGLGLALAQP-RKVIVIDGDGSLLMNL 75 (179)
T ss_pred HHHHHHHHHhCC-CCeEEeCCCHhHHHHHHcc-Ccccccc---cccchhhHHHHHHHHHhcCC-CcEEEEECCcHHHhCH
Confidence 468899999999 9999999999865543332 1223344 28999999999999999988 9999999999999999
Q ss_pred HHHHHHHHhCC-ceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc-CHHHHHHHHHhhcCCC
Q 044559 470 QDVSTMLRCGQ-KTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF-CEEELIEAIENATGPK 547 (585)
Q Consensus 470 ~eL~ta~~~~l-pv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~-~~~eL~~aL~~a~~~~ 547 (585)
+||+|++++++ |+++||+||++|++..... .+ ...++||.++|++||+ ++.+|+ +.++|+++|++++
T Consensus 76 ~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~--~~-~~~~~d~~~lA~a~G~-----~~~~v~~~~~el~~al~~a~--- 144 (179)
T cd03372 76 GALATIAAEKPKNLIIVVLDNGAYGSTGNQP--TH-AGKKTDLEAVAKACGL-----DNVATVASEEAFEKAVEQAL--- 144 (179)
T ss_pred HHHHHHHHcCCCCEEEEEEcCccccccCCCC--CC-CCCCCCHHHHHHHcCC-----CeEEecCCHHHHHHHHHHhc---
Confidence 99999999995 7999999999999842111 11 1146999999999999 899999 9999999999985
Q ss_pred CCCeEEEEEEcCCCCCh
Q 044559 548 KDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 548 ~~gp~vIeV~v~~~~~~ 564 (585)
++|.||||.+++++.+
T Consensus 145 -~gp~lIev~~~~~~~~ 160 (179)
T cd03372 145 -DGPSFIHVKIKPGNTD 160 (179)
T ss_pred -CCCEEEEEEEcCCCCC
Confidence 6899999999987764
No 88
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.95 E-value=8e-28 Score=224.04 Aligned_cols=160 Identities=26% Similarity=0.434 Sum_probs=138.5
Q ss_pred HHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHH
Q 044559 392 LFQHIQKMLSSETAVIAETGDSWFNCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQ 470 (585)
Q Consensus 392 ~~~~l~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~ 470 (585)
+++.|.+.++++++++.|+|++..+.. ++....+.+++.+.++|+||+++|+|+|++++.|+++|++++|||+|+|+++
T Consensus 2 ~~~~l~~~~~~~~~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~~~~ 81 (168)
T cd00568 2 VLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMMTGQ 81 (168)
T ss_pred HHHHHHHHCCCCCEEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhccHH
Confidence 578889999999999999999877654 3444445557888899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEEeCCcceeeeeec----CC--CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhc
Q 044559 471 DVSTMLRCGQKTIIFLINNGGYTIEVEIH----DG--PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENAT 544 (585)
Q Consensus 471 eL~ta~~~~lpv~ivV~NN~~~~~~~~~~----~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~ 544 (585)
||+|++++++|+++||+||++|++....+ +. .+...+.+||.+++++||+ ++.+|+++++|++++++++
T Consensus 82 ~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~-----~~~~v~~~~~l~~a~~~a~ 156 (168)
T cd00568 82 ELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGA-----KGVRVEDPEDLEAALAEAL 156 (168)
T ss_pred HHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999999843221 11 2244577999999999999 9999999999999999998
Q ss_pred CCCCCCeEEEEEEc
Q 044559 545 GPKKDCLCFIEVLV 558 (585)
Q Consensus 545 ~~~~~gp~vIeV~v 558 (585)
+ .++|+||||++
T Consensus 157 ~--~~~p~~i~v~~ 168 (168)
T cd00568 157 A--AGGPALIEVKT 168 (168)
T ss_pred h--CCCCEEEEEEC
Confidence 6 88999999975
No 89
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.95 E-value=2.8e-27 Score=230.12 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=135.8
Q ss_pred CcCHHHHHHHHHhhCCCCCEEEecCCcccccccc-----ccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEE
Q 044559 386 PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQK-----LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACI 460 (585)
Q Consensus 386 ~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~-----~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~ 460 (585)
......+++.|++.+|+|.+++.|+|++..|... ++.+...+++. ..++||+++|+|+|++++.|+|+||+++
T Consensus 10 gC~~~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~--~~gsmG~GlpaAiGa~~a~p~r~VV~i~ 87 (235)
T cd03376 10 GCGAALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFE--NAAAVASGIEAALKALGRGKDITVVAFA 87 (235)
T ss_pred CCccHHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCccccccceehhhc--CHHHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 3566788999999999999999999999765332 23333333332 3479999999999999999999999999
Q ss_pred ccchh-cccHHHHHHHHHhCCceEEEEEeCCcceee---eeecC---CC-----c-C-----CCCCCChHHHHHHhcCCC
Q 044559 461 GDGSF-QVTAQDVSTMLRCGQKTIIFLINNGGYTIE---VEIHD---GP-----Y-N-----VIKNWNYTGLVDAIHNGE 522 (585)
Q Consensus 461 GDGsf-~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~---~~~~~---~~-----~-~-----~~~~~d~~~la~a~G~~~ 522 (585)
|||+| +|+++||+|++|+++|+++||+||++|++. +.... +. + . ....+||.++|++||+
T Consensus 88 GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~-- 165 (235)
T cd03376 88 GDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNI-- 165 (235)
T ss_pred cCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCC--
Confidence 99995 899999999999999999999999999972 21111 11 1 1 2256899999999998
Q ss_pred CCceeE---EEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCC
Q 044559 523 GKCWTT---KVFCEEELIEAIENATGPKKDCLCFIEVLVHKD 561 (585)
Q Consensus 523 ~~~~~~---~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~ 561 (585)
+++ ++++++||+++|+++++ .++|+||||.++--
T Consensus 166 ---~~~~~~~v~~~~el~~al~~a~~--~~gP~lIev~~~C~ 202 (235)
T cd03376 166 ---PYVATASVAYPEDLYKKVKKALS--IEGPAYIHILSPCP 202 (235)
T ss_pred ---cEEEEEcCCCHHHHHHHHHHHHh--CCCCEEEEEECCCC
Confidence 775 58999999999999996 88999999999854
No 90
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.95 E-value=3.4e-27 Score=229.98 Aligned_cols=171 Identities=12% Similarity=0.064 Sum_probs=138.9
Q ss_pred CcCHHHHHHHHHhhCC--CCCEEEecCCccccccccc-cccCCCeeeecC--CcccccchhHHHHhhhhc-----CCCCc
Q 044559 386 PLRVNVLFQHIQKMLS--SETAVIAETGDSWFNCQKL-KLPKGCGYEFQM--QYGSIGWSVGATLGYAQS-----VPEKR 455 (585)
Q Consensus 386 ~i~~~~~~~~l~~~l~--~~~iiv~d~G~~~~~~~~~-~~~~~~~~~~~~--~~g~mG~~lpaAiGaalA-----~p~r~ 455 (585)
......+++.|.+.++ ++.+++.|+|++..|...+ ..+...++..+. +.|+||+++|+|||++++ .|+++
T Consensus 10 gc~~~~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~ 89 (237)
T cd02018 10 GCGEVTAVRVVLAALPAPEDTVIANSTGCSSVYASTAPFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKD 89 (237)
T ss_pred CCCcHHHHHHHHHHhCCCCCEEEEeCCCccceecccCcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCc
Confidence 3456678899999999 9999999999998775433 222222344443 559999999999999999 99999
Q ss_pred EEEEEccchhc-ccHHHHHHHHHhCCceEEEEEeCCcceeeeeec-----CCC-------cCCCCCCChHHHHHHhcCCC
Q 044559 456 VIACIGDGSFQ-VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH-----DGP-------YNVIKNWNYTGLVDAIHNGE 522 (585)
Q Consensus 456 vv~v~GDGsf~-~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----~~~-------~~~~~~~d~~~la~a~G~~~ 522 (585)
||+++|||+|+ |++++|+|++++++|+++||+||++|++...+. .+. ..++.++||.++|++||+
T Consensus 90 Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~-- 167 (237)
T cd02018 90 VVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGC-- 167 (237)
T ss_pred EEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCC--
Confidence 99999999998 899999999999999999999999999842111 111 123567999999999999
Q ss_pred CCceeEE---EcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCC
Q 044559 523 GKCWTTK---VFCEEELIEAIENATGPKKDCLCFIEVLVHKDD 562 (585)
Q Consensus 523 ~~~~~~~---V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
++.+ |+++++|+++|+++++ +.+||+||||.++...
T Consensus 168 ---~~~~~~~v~~~~~l~~al~~al~-~~~GP~lI~v~i~c~~ 206 (237)
T cd02018 168 ---VYVARLSPALKKHFLKVVKEAIS-RTDGPTFIHAYTPCIT 206 (237)
T ss_pred ---CEEEEEccCCHHHHHHHHHHHHh-cCCCCEEEEEeCCCCC
Confidence 8875 9999999999999982 2789999999988544
No 91
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.94 E-value=2.3e-26 Score=227.10 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=133.5
Q ss_pred CCcCHHHHHHHHHhh--CCCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEcc
Q 044559 385 EPLRVNVLFQHIQKM--LSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGD 462 (585)
Q Consensus 385 ~~i~~~~~~~~l~~~--l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GD 462 (585)
..+.+..++++|.+. .+++.++++|+|++..+..++.. ....++||+++|+|+|+|+|+|+++||+++||
T Consensus 24 ~~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~~~~~--------~~~~~~~G~alPaAiGaklA~Pdr~VV~i~GD 95 (277)
T PRK09628 24 DGVILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSSYVNC--------NTVHTTHGRAVAYATGIKLANPDKHVIVVSGD 95 (277)
T ss_pred CchHHHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhccCCC--------CceeeccccHHHHHHHHHHHCCCCeEEEEECc
Confidence 357889999999998 58899999999998554332211 11235899999999999999999999999999
Q ss_pred chhcc-cHHHHHHHHHhCCceEEEEEeCCcceeeeeecC-----C------CcCC-CCCCChHHHHHHhcCCCCCcee--
Q 044559 463 GSFQV-TAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD-----G------PYNV-IKNWNYTGLVDAIHNGEGKCWT-- 527 (585)
Q Consensus 463 Gsf~~-~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~-----~------~~~~-~~~~d~~~la~a~G~~~~~~~~-- 527 (585)
|+|+| +.+|+.|++|+++|+++||+||+.|||.+.+.. + ++.. .+++||.++|++||+ .+
T Consensus 96 G~f~~~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~-----~~va 170 (277)
T PRK09628 96 GDGLAIGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGA-----SFVA 170 (277)
T ss_pred hHHHHhhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCC-----ceEE
Confidence 99975 789999999999999999999999999432211 1 1212 256799999999999 76
Q ss_pred -EEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCC
Q 044559 528 -TKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDD 562 (585)
Q Consensus 528 -~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
.+|+++++|+++|++|++ .+||+||||.++...
T Consensus 171 ~~~v~~~~el~~al~~Al~--~~Gp~lIeV~~~c~~ 204 (277)
T PRK09628 171 RESVIDPQKLEKLLVKGFS--HKGFSFFDVFSNCHI 204 (277)
T ss_pred EEccCCHHHHHHHHHHHHh--CCCCEEEEEcCCCCC
Confidence 489999999999999997 899999999998654
No 92
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.93 E-value=1.1e-25 Score=204.73 Aligned_cols=151 Identities=22% Similarity=0.209 Sum_probs=121.1
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEE-eCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHH
Q 044559 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLI-GCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAI 125 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i-~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l 125 (585)
++|++.|+++||+++||+||+.+.+|++++.. +|++| .++||++|++||++| +++|+ +||+.++|+| |++++|
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~--~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l 76 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK--DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINAL 76 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh--CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHH
Confidence 68999999999999999999999999999953 49999 888888888888888 99888 7777777766 999999
Q ss_pred HHhh-hcCCcEEEEeCCCCCcccCC-ccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcE
Q 044559 126 AGAY-SENLPLICIVGGPNSNDYGT-NRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPV 203 (585)
Q Consensus 126 ~~A~-~~~~PllvI~g~~~~~~~~~-~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 203 (585)
++|+ .+++|||+|+|+++...... ++..+..++ ....++.++ ++.++.+++++ +.+++|++.|.+.+|||
T Consensus 77 ~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~-~~~l~~~~i------~~~~i~~~e~~-~~i~~A~~~a~~~~gPv 148 (157)
T TIGR03845 77 ASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRAT-PKLLDTLGI------PYTIPREPEEA-KLIEKAISDAYENSRPV 148 (157)
T ss_pred HHHHHcCCCCEEEEEeccCCCCCCCccccchhhhh-HHHHHHcCC------CeEEeCCHHHH-HHHHHHHHHHHhCCCCE
Confidence 9999 99999999999987732111 110000110 011133333 58889999999 99999999999988999
Q ss_pred EEEecCCC
Q 044559 204 YISVACNL 211 (585)
Q Consensus 204 ~i~iP~dv 211 (585)
+|-++.++
T Consensus 149 ~il~~~~~ 156 (157)
T TIGR03845 149 AALLDPKY 156 (157)
T ss_pred EEEEeCCc
Confidence 99998765
No 93
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.93 E-value=1.2e-25 Score=224.42 Aligned_cols=159 Identities=21% Similarity=0.202 Sum_probs=130.6
Q ss_pred cCHHHHHHHHHhh-C-CCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccch
Q 044559 387 LRVNVLFQHIQKM-L-SSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGS 464 (585)
Q Consensus 387 i~~~~~~~~l~~~-l-~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGs 464 (585)
+-...++++|.+. + |++.++++|+|++.++..++. .+...++||+++|+|+|+++|+|+++||+++|||+
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~--------~~~~~g~mG~alpaAiGaklA~pd~~VV~i~GDG~ 99 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL--------SHGLHTLHGRAIAFATGAKLANPDLEVIVVGGDGD 99 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc--------cCccchhhccHHHHHHHHHHHCCCCcEEEEeCccH
Confidence 4567788888886 4 788899999999875443221 12224899999999999999999999999999999
Q ss_pred h-cccHHHHHHHHHhCCceEEEEEeCCcceeeeeec-----CC------Cc-CCCCCCChHHHHHHhcCCCCCceeE---
Q 044559 465 F-QVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH-----DG------PY-NVIKNWNYTGLVDAIHNGEGKCWTT--- 528 (585)
Q Consensus 465 f-~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----~~------~~-~~~~~~d~~~la~a~G~~~~~~~~~--- 528 (585)
| +|+++||+|++|+++|+++||+||++|++...+. .+ ++ ....++||.++|+++|+ .++
T Consensus 100 ~~~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~-----~~va~~ 174 (301)
T PRK05778 100 LASIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGA-----TFVARS 174 (301)
T ss_pred HHhccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCC-----CEEEEe
Confidence 8 4999999999999999999999999999943221 01 12 12257899999999999 676
Q ss_pred EEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 529 KVFCEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 529 ~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
++.++++|.++|++|++ .+||+||||.+.-
T Consensus 175 ~v~~~~eL~~ai~~A~~--~~GpalIeV~~~C 204 (301)
T PRK05778 175 FAGDVKQLVELIKKAIS--HKGFAFIDVLSPC 204 (301)
T ss_pred ccCCHHHHHHHHHHHHh--CCCCEEEEEcCCC
Confidence 78999999999999996 8999999999873
No 94
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.93 E-value=2e-25 Score=222.07 Aligned_cols=172 Identities=20% Similarity=0.214 Sum_probs=137.6
Q ss_pred CcCHHHHHHHHHhhC------CCCCEEEecCCccccccccccccCCCeeeecCCc-ccccchhHHHHhhhhcCCCCcEEE
Q 044559 386 PLRVNVLFQHIQKML------SSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQY-GSIGWSVGATLGYAQSVPEKRVIA 458 (585)
Q Consensus 386 ~i~~~~~~~~l~~~l------~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaAiGaalA~p~r~vv~ 458 (585)
......+++.|.+.+ |++.++++|+|++.++.. |+.+.++ ++||+++|+|+|+|+|+|+++||+
T Consensus 22 GCg~~~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~~---------~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~ 92 (286)
T PRK11867 22 GCGDGSILAALQRALAELGLDPENVAVVSGIGCSGRLPG---------YINTYGFHTIHGRALAIATGLKLANPDLTVIV 92 (286)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCcEEEEeCCccccccCc---------cccccchhhhhhcHHHHHHHHHHhCCCCcEEE
Confidence 345566888888888 788999999999976432 3344455 899999999999999999999999
Q ss_pred EEccch-hcccHHHHHHHHHhCCceEEEEEeCCcceeeeeec-C-----C-----CcCCC-CCCChHHHHHHhcCCCCCc
Q 044559 459 CIGDGS-FQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH-D-----G-----PYNVI-KNWNYTGLVDAIHNGEGKC 525 (585)
Q Consensus 459 v~GDGs-f~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-~-----~-----~~~~~-~~~d~~~la~a~G~~~~~~ 525 (585)
++|||+ |+|+++||+|++|+++|+++||+||++|++...+. . . ++... .++||.++|+++|+
T Consensus 93 i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga----- 167 (286)
T PRK11867 93 VTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGA----- 167 (286)
T ss_pred EeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCC-----
Confidence 999995 99999999999999999999999999999943221 1 1 11122 35899999999998
Q ss_pred eeEE---EcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCC-hHHHHHHHHH
Q 044559 526 WTTK---VFCEEELIEAIENATGPKKDCLCFIEVLVHKDDT-SKELLEWGSR 573 (585)
Q Consensus 526 ~~~~---V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~-~~~~~~~~~~ 573 (585)
.++. +.++++|.++|+++++ .+||+||||.++--.. +....+|+++
T Consensus 168 ~~va~~~~~~~~el~~al~~Al~--~~Gp~lIev~~~C~~~~~~~~~~~~~~ 217 (286)
T PRK11867 168 TFVARGFDSDVKQLTELIKAAIN--HKGFSFVEILQPCPTFNNVNTFDWFKE 217 (286)
T ss_pred cEEEEecCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCCCchHHHHHHHH
Confidence 6653 6789999999999996 8999999999986554 4444444443
No 95
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.92 E-value=8.8e-25 Score=215.31 Aligned_cols=147 Identities=17% Similarity=0.195 Sum_probs=121.2
Q ss_pred hCCCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhccc-HHHHHHHHH
Q 044559 399 MLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQDVSTMLR 477 (585)
Q Consensus 399 ~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~eL~ta~~ 477 (585)
.+|++.++++|+|++..+..++.. ....+.||+++|+|+|+++|+|+++||+++|||+|+|. +|||+||+|
T Consensus 32 ~~p~d~ivvsdiG~~~~~~~~~~~--------~~~~~~mG~alp~AiGaklA~pd~~VVai~GDG~~~~iG~~eL~tA~r 103 (280)
T PRK11869 32 LKPRQVVIVSGIGQAAKMPHYINV--------NGFHTLHGRAIPAATAVKATNPELTVIAEGGDGDMYAEGGNHLIHAIR 103 (280)
T ss_pred CCCCCEEEEeCchHhhhHHHHccC--------CCCCcccccHHHHHHHHHHHCCCCcEEEEECchHHhhCcHHHHHHHHH
Confidence 357789999999998765332211 23356799999999999999999999999999999976 999999999
Q ss_pred hCCceEEEEEeCCcceeee-eecC----C------CcC-CCCCCChHHHHHHhcCCCCCceeEE---EcCHHHHHHHHHh
Q 044559 478 CGQKTIIFLINNGGYTIEV-EIHD----G------PYN-VIKNWNYTGLVDAIHNGEGKCWTTK---VFCEEELIEAIEN 542 (585)
Q Consensus 478 ~~lpv~ivV~NN~~~~~~~-~~~~----~------~~~-~~~~~d~~~la~a~G~~~~~~~~~~---V~~~~eL~~aL~~ 542 (585)
+++|+++||+||++|++.. +... + ++. ...++||.++|+++|+ .++. +.++++|.++|++
T Consensus 104 ~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~-----~~va~~~~~~~~~l~~~i~~ 178 (280)
T PRK11869 104 RNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDA-----SFVARTFSGDIEETKEILKE 178 (280)
T ss_pred hCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCC-----CEEEEeCCCCHHHHHHHHHH
Confidence 9999999999999999832 2211 1 112 2246899999999999 7888 7799999999999
Q ss_pred hcCCCCCCeEEEEEEcCC
Q 044559 543 ATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 543 a~~~~~~gp~vIeV~v~~ 560 (585)
|++ .+||+||||.+.-
T Consensus 179 Al~--~~Gp~lIeV~~pC 194 (280)
T PRK11869 179 AIK--HKGLAIVDIFQPC 194 (280)
T ss_pred HHh--CCCCEEEEEECCC
Confidence 997 8999999999874
No 96
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.91 E-value=1.1e-23 Score=207.78 Aligned_cols=161 Identities=19% Similarity=0.131 Sum_probs=127.8
Q ss_pred cCHHHHHHHHHhhC------CCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEE
Q 044559 387 LRVNVLFQHIQKML------SSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACI 460 (585)
Q Consensus 387 i~~~~~~~~l~~~l------~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~ 460 (585)
.....++..|++.+ +++.++++|+|++.+...++.. ....++||+++|+|+|+++|+|+++||+++
T Consensus 13 Cg~~~il~al~~al~~l~~~~~~~ivvsdiGc~~~~~~~~~~--------~~~~~~~G~alp~A~GaklA~Pd~~VV~i~ 84 (279)
T PRK11866 13 CGNYGILEALRKALAELGIPPENVVVVSGIGCSSNLPEFLNT--------YGIHGIHGRVLPIATGVKWANPKLTVIGYG 84 (279)
T ss_pred CCChHHHHHHHHHHHHhcCCCCCEEEEECCchhhhhhhhccC--------CCcccccccHHHHHHHHHHHCCCCcEEEEE
Confidence 44555666666666 6788999999999743322221 233788999999999999999999999999
Q ss_pred ccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeee-eecC-----CC-----cCCC-CCCChHHHHHHhcCCCCCcee
Q 044559 461 GDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEV-EIHD-----GP-----YNVI-KNWNYTGLVDAIHNGEGKCWT 527 (585)
Q Consensus 461 GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~-~~~~-----~~-----~~~~-~~~d~~~la~a~G~~~~~~~~ 527 (585)
||| +|+|+++||.||+|+|+|+++||+||+.|+|.. +... .. +... .+.||.++|+++|+ .+
T Consensus 85 GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~-----~~ 159 (279)
T PRK11866 85 GDGDGYGIGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGA-----TF 159 (279)
T ss_pred CChHHHHccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCC-----CE
Confidence 999 799999999999999999999999999999943 2211 11 1111 23699999999999 66
Q ss_pred EEE---cCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCC
Q 044559 528 TKV---FCEEELIEAIENATGPKKDCLCFIEVLVHKDD 562 (585)
Q Consensus 528 ~~V---~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
+.. .++++|.++|++|++ .+||.||||...--.
T Consensus 160 Va~~~~~~~~~l~~~l~~Al~--~~Gps~I~v~~pC~~ 195 (279)
T PRK11866 160 VARGFSGDVKHLKEIIKEAIK--HKGFSFIDVLSPCVT 195 (279)
T ss_pred EEEEcCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCC
Confidence 655 789999999999997 899999999987433
No 97
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.90 E-value=9.9e-24 Score=208.59 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=117.0
Q ss_pred CCCCCEEEecCCccccccccccccCCCeeeecCCc-ccccchhHHHHhhhhcCCCCcEEEEEccchhc-ccHHHHHHHHH
Q 044559 400 LSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQY-GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQ-VTAQDVSTMLR 477 (585)
Q Consensus 400 l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~-~~~~eL~ta~~ 477 (585)
.|++.++++|+|++... + +|+...++ +.||+++|+|+|+|+|+|+++||+++|||+|+ |+++||+||+|
T Consensus 26 ~p~d~iivsdiGc~~~~------~---~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f~~mg~~eL~tA~r 96 (287)
T TIGR02177 26 DPEQVVVVSGIGCSAKT------P---HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDLYGIGGNHFVAAGR 96 (287)
T ss_pred CCCCEEEEECCCccccc------C---CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHHHhccHHHHHHHHH
Confidence 46789999999998631 1 25555555 45899999999999999999999999999986 99999999999
Q ss_pred hCCceEEEEEeCCcceeeeeec--C---C------CcCCC---CCCChHHHHHHhcCCCCCceeEE-EcCHHHHHHHHHh
Q 044559 478 CGQKTIIFLINNGGYTIEVEIH--D---G------PYNVI---KNWNYTGLVDAIHNGEGKCWTTK-VFCEEELIEAIEN 542 (585)
Q Consensus 478 ~~lpv~ivV~NN~~~~~~~~~~--~---~------~~~~~---~~~d~~~la~a~G~~~~~~~~~~-V~~~~eL~~aL~~ 542 (585)
+|+|+++||+||+.|+|...+. . + ++..+ .+++|.++|+++|+ .+.. +.++++|.++|++
T Consensus 97 ~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~-----va~~~~~~~~eL~~ai~~ 171 (287)
T TIGR02177 97 RNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTF-----VARGFSGDVAHLKEIIKE 171 (287)
T ss_pred hCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCe-----EEEEecCCHHHHHHHHHH
Confidence 9999999999999999933211 1 1 11111 24667888888887 5665 6899999999999
Q ss_pred hcCCCCCCeEEEEEEcCC
Q 044559 543 ATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 543 a~~~~~~gp~vIeV~v~~ 560 (585)
|++ .+||+||||.+.-
T Consensus 172 Al~--~~GpslIeV~~pC 187 (287)
T TIGR02177 172 AIN--HKGYALVDILQPC 187 (287)
T ss_pred HHh--CCCCEEEEEeCCC
Confidence 997 8999999999874
No 98
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.85 E-value=1.6e-18 Score=181.81 Aligned_cols=460 Identities=17% Similarity=0.150 Sum_probs=278.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC----CCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCCh
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEP----GLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTV 116 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~----~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGp 116 (585)
.-+.|-++|++.+.+.||.++-|+||+++.+|.+.|.+-. ++.+-+..||..|..+|.| |...|. +++.. -.|
T Consensus 14 ~~llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~G-A~~~G~ral~~m-KhV 91 (640)
T COG4231 14 RLLLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAG-ASYAGVRALVTM-KHV 91 (640)
T ss_pred HHhccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHH-hhhcCceeeEEe-ccc
Confidence 4567889999999999999999999999999999987643 5899999999999999999 666676 65554 367
Q ss_pred hhHHHHHHHHHhhhcCCc--EEEEeCCCCCcccCCccccccccCCCChhHHHhhhcce-eEEEEEeCChhhHHHHHHHHH
Q 044559 117 GGLSVLNAIAGAYSENLP--LICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV-TCYQAVVNNLEDAHELIDTAV 193 (585)
Q Consensus 117 G~~n~~~~l~~A~~~~~P--llvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~-tk~~~~v~~~~~~~~~l~~A~ 193 (585)
|+.-+.-.+..+.+.++= ||+|+||.|......+ .++.+.|... --+..+..+++++.+++..||
T Consensus 92 GlNvAsDpl~s~ay~Gv~GGlviv~aDDpg~~SSqn------------eqdsr~y~~~a~iPvLeP~d~Qea~d~~~~af 159 (640)
T COG4231 92 GLNVASDPLMSLAYAGVTGGLVIVVADDPGMHSSQN------------EQDSRAYGKFALIPVLEPSDPQEAYDYVKYAF 159 (640)
T ss_pred ccccchhhhhhhhhcCccccEEEEEccCCCcccccc------------hhHhHHHHHhcCceeecCCChHHHHHHHHHHH
Confidence 766667778877777764 9999999887632221 1122222222 224556678999999999999
Q ss_pred HHhhhcCCcEEEEecCCCCCCCCCCCCC----CC-CCC-----------cCCCCCC---ChhhHHHHHHHHHHHHHhc--
Q 044559 194 STALKESKPVYISVACNLPAIPHPTFSR----EP-VPF-----------SLSPKLS---NEMGLEAAVEAAAEFLNKA-- 252 (585)
Q Consensus 194 ~~a~~~~GPV~i~iP~dv~~~~~~~~~~----~~-~~~-----------~~~~~~~---~~~~~~~~v~~~~~~L~~a-- 252 (585)
.++..-.-||.|..-.++.+....+... .+ .+. ...|... ...-....+.++.+.+++.
T Consensus 160 elSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~ 239 (640)
T COG4231 160 ELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPL 239 (640)
T ss_pred HHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeecCcccchhhHHHHHHHHHHHHHHHhhCcc
Confidence 9998878899999999987653222111 00 000 0001000 0011122234444444422
Q ss_pred --------CCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCCccccCCCCCCccccccCCCCCCcccccccccCCCc
Q 044559 253 --------VKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFFSVGYSLLLKKE 324 (585)
Q Consensus 253 --------~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~~~~~~~~~~~~~ 324 (585)
.+.-||+.+.+ +....++|. .+|+-.. . = .+..-||+-.... ..|..+.
T Consensus 240 n~v~~~~~~~lGII~~G~a-y~yVkeAl~----~lgl~~~--~-l--klg~~~Plp~~~i-------------~~F~~g~ 296 (640)
T COG4231 240 NRVEGSDDAKLGIIASGIA-YNYVKEALE----DLGLDDE--L-L--KLGTPYPLPEQLI-------------ENFLKGL 296 (640)
T ss_pred cccccCCCCceEEEecCcc-HHHHHHHHH----HcCCCce--e-E--EecCCcCCCHHHH-------------HHHHhcC
Confidence 22223333222 223444444 3443211 0 0 0111234322211 0011111
Q ss_pred -cEEEEc-CC----------------cceeccCC--cc---ccccHHHHHHHHHHHhccCcc-hhhh----hcccc--CC
Q 044559 325 -KAVILQ-PD----------------RVVIANGP--AF---GCVLMKDFLKALSKRLKSNTT-AYEN----YHRIY--VP 374 (585)
Q Consensus 325 -~~i~vd-~d----------------~~~i~~~~--~~---~~~~~~~~l~~L~~~l~~~~~-~~~~----~~~~~--~~ 374 (585)
+++-|. .+ +..+..+. .+ .+++++.+..+|...+..... ..+. .++.. .+
T Consensus 297 ~~vlVVEE~~P~iE~qv~~~l~~~g~~v~v~GKd~gllP~~GElt~~~i~~ai~~~l~~~~~~s~~~~~~~~~~~~~~~~ 376 (640)
T COG4231 297 ERVLVVEEGEPFIEEQVKALLYDAGLPVEVHGKDEGLLPMEGELTPEKIANAIAKFLGKEGSPSYESIVAEVRKAAVLIP 376 (640)
T ss_pred cEEEEEecCCchHHHHHHHHHHhcCCceEeecccccccCcccccCHHHHHHHHHHHhCccCCcccccchhhhhcccccCC
Confidence 111111 00 11111011 22 245777888888777654321 1111 11100 11
Q ss_pred CCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCC
Q 044559 375 EGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEK 454 (585)
Q Consensus 375 ~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r 454 (585)
.+.+.-+...+..+...+++.....+.... -.|+|++.+..+. | +-.....-.||.+++.|=|+.++.+ +
T Consensus 377 ~RpP~lC~GCPHr~sf~~~k~~~~~~~~~~--~~DIGCytlg~~~---P----~~~~d~t~~mGssig~a~g~~~~~~-k 446 (640)
T COG4231 377 PRPPALCPGCPHRPSFYALKKAAAELGGHP--SGDIGCYTLGILP---P----LNTVDTTTMMGSSIGIAGGLSFAST-K 446 (640)
T ss_pred CCCCcCCCCCCCchhhHHHHHHHHhhCCCC--CCCcceeecccCC---C----cchhhhhhhccchhhhccccccccC-C
Confidence 111122233344455566666666665444 6799999776531 1 1111223468888999999988765 8
Q ss_pred cEEEEEccchhccc-HHHHHHHHHhCCceEEEEEeCCcceee-eeecCCC-c----CCCCCCChHHHHHHhcCCCCCcee
Q 044559 455 RVIACIGDGSFQVT-AQDVSTMLRCGQKTIIFLINNGGYTIE-VEIHDGP-Y----NVIKNWNYTGLVDAIHNGEGKCWT 527 (585)
Q Consensus 455 ~vv~v~GDGsf~~~-~~eL~ta~~~~lpv~ivV~NN~~~~~~-~~~~~~~-~----~~~~~~d~~~la~a~G~~~~~~~~ 527 (585)
++++++|||+|+|+ +..|.+|+..+.+++++|++|..-+|. .|-+++. + ..-..++.+.+++++|+ ..
T Consensus 447 ~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv-----~~ 521 (640)
T COG4231 447 KIVAVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGV-----ED 521 (640)
T ss_pred ceEEEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCc-----ee
Confidence 89999999999997 888999999999999999999999993 3333432 1 12346899999999999 55
Q ss_pred EEE---cCHHHHHHHHHhhcCCCCCCeEEEE
Q 044559 528 TKV---FCEEELIEAIENATGPKKDCLCFIE 555 (585)
Q Consensus 528 ~~V---~~~~eL~~aL~~a~~~~~~gp~vIe 555 (585)
+++ -+.+++.++++++++ ..+|.||-
T Consensus 522 v~~vdp~~~~~~~~~~keale--~~gpsVii 550 (640)
T COG4231 522 VETVDPYDVKELSEAIKEALE--VPGPSVII 550 (640)
T ss_pred eeccCCcchHHHHHHHHHHhc--CCCceEEE
Confidence 544 468899999999997 77888873
No 99
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.76 E-value=1.1e-15 Score=175.19 Aligned_cols=469 Identities=14% Similarity=0.038 Sum_probs=261.5
Q ss_pred CCCCcHHHHHHHHHHH-------cCC---CEEEecCCCChHHHHHhhhcCC------CCeEEeCcchHHHHHHHhHHhH-
Q 044559 41 PSESTLGRHLARRLVQ-------IGA---TDVFSVPGDFNLTLLDHLIAEP------GLNLIGCCNELNAGYAADGYAR- 103 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~-------~GV---~~vFg~PG~~~~~l~~al~~~~------~i~~i~~~~E~~A~~~A~Gyar- 103 (585)
..-++|.|+|++.+.+ .|+ .+|-|+||++...+.+.|.+.. +|.+.+..||..|+-+|.|-++
T Consensus 17 ~~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~ 96 (1159)
T PRK13030 17 RIFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQV 96 (1159)
T ss_pred CEeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhccc
Confidence 4568999999999999 999 9999999999999999997643 4999999999999999999763
Q ss_pred -------hcCccEEEEeCChhhHHHHHHHHHhhhcCC----cEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcce
Q 044559 104 -------SRGVGACVVTFTVGGLSVLNAIAGAYSENL----PLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV 172 (585)
Q Consensus 104 -------~tg~~v~~~tsGpG~~n~~~~l~~A~~~~~----PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~ 172 (585)
..|.-.+..--+||+--+.-++..+.+.++ -||+|+||.|....... .|-.++..++..+
T Consensus 97 ~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SSq~---------eqdSr~~~~~a~i 167 (1159)
T PRK13030 97 EADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSSSM---------PHQSDFALIAWHM 167 (1159)
T ss_pred cccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccCcC---------HHHHHHHHHHcCC
Confidence 334322334567898778889988877777 59999999888733221 1112233333333
Q ss_pred eEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCCCCCCCC-----CCC--CcCCC-----CCCC-hhh--
Q 044559 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSRE-----PVP--FSLSP-----KLSN-EMG-- 237 (585)
Q Consensus 173 tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~~~~~~~~~~~-----~~~--~~~~~-----~~~~-~~~-- 237 (585)
. .....+++++.+....||.++....-||-+..-.++.+....+.... ..+ ...++ .... +..
T Consensus 168 P--vl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~ 245 (1159)
T PRK13030 168 P--VLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAI 245 (1159)
T ss_pred c--eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHH
Confidence 2 34556889999999999999887788999999888866422211100 000 11111 0011 010
Q ss_pred ---HHHHHHHHHHHHHhcCCC----------EEEcCCcccccchHHHHHHHHHHhCC-ceEeCCCCccccC--CCCCCcc
Q 044559 238 ---LEAAVEAAAEFLNKAVKP----------VLVAGPKMRVAKACNAFVELADACGY-AVAVMPSAKGLVP--EHHPHFI 301 (585)
Q Consensus 238 ---~~~~v~~~~~~L~~a~rp----------vIi~G~g~~~~~a~~~l~~lae~~~~-Pv~tt~~gkg~~~--~~hp~~~ 301 (585)
....+..+.+.-...+-+ +-|+-.|.. ...+++-.+.+|+ .......|-.++. -.+|+-.
T Consensus 246 ~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~a----y~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~ 321 (1159)
T PRK13030 246 EARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKA----HLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEP 321 (1159)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCcc----HHHHHHHHHHcCCCcccccccCccEEEeCCccCCCH
Confidence 111222333322212111 222222332 2333333344443 1111111111000 0123211
Q ss_pred ccc----cCCC-------CCCc-----ccccccccCC-CccEEEE-cCCcceeccCCccccccHHHHHHHHHHHhccCcc
Q 044559 302 GTY----WGAV-------STAF-----FSVGYSLLLK-KEKAVIL-QPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTT 363 (585)
Q Consensus 302 g~~----~g~~-------~~~~-----~~~~~~~~~~-~~~~i~v-d~d~~~i~~~~~~~~~~~~~~l~~L~~~l~~~~~ 363 (585)
... .|.. ..+. ....|..... ..+++-. |.+...+ -....++++..+...|...+.....
T Consensus 322 ~~i~~F~~g~d~VlVVEE~~p~iE~Qlk~~l~~~~~~~~~~v~GK~~~~G~pl--lp~~gEl~~~~v~~~l~~~l~~~~~ 399 (1159)
T PRK13030 322 TRLREFADGLEEILVIEEKRPVIEQQIKDYLYNRPGGARPRVVGKHDEDGAPL--LSELGELRPSLIAPVLAARLARHKP 399 (1159)
T ss_pred HHHHHHHhcCCEEEEEeCCchHHHHHHHHHHHhccccCCceeEEEECCCCCcC--CCCcCCcCHHHHHHHHHHHHhccCc
Confidence 100 0000 0000 0000000000 0111111 1110000 0122345666666666555432111
Q ss_pred --hhh----hhc-cc--c----CCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeee
Q 044559 364 --AYE----NYH-RI--Y----VPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEF 430 (585)
Q Consensus 364 --~~~----~~~-~~--~----~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~ 430 (585)
... .+. +. . .+.+.+.-+.. ..+...+ .++++.++..|+|++.+..+.++ .
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~R~P~~C~G---CPH~~s~-----k~~~~~~~~gdIGC~tl~~~~~~---~----- 463 (1159)
T PRK13030 400 ALDRRARVVDLVAPQILSNEADAVVRTPYFCSG---CPHNTST-----KVPEGSIAQAGIGCHFMASWMDR---D----- 463 (1159)
T ss_pred cchhhhccccccccccccccccCCCCCCCcCCC---CCCchhh-----ccCCCCEeecCcCHHHHhhcccc---c-----
Confidence 100 110 00 0 00011111111 2222222 35578899999999987654321 1
Q ss_pred cCCcccccchhHHHHhhhhcCCCCcEEEEEccchhccc-HHHHHHHHHhCCceEEEEEeCCcceee-eeecCCCcCCCCC
Q 044559 431 QMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQDVSTMLRCGQKTIIFLINNGGYTIE-VEIHDGPYNVIKN 508 (585)
Q Consensus 431 ~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~eL~ta~~~~lpv~ivV~NN~~~~~~-~~~~~~~~~~~~~ 508 (585)
...+-+||.+++.++|.+-+..+++||+++|||+|+|+ +..|..|+..+.|++++|++|+.-+|. .|-+++ .
T Consensus 464 ~~~~~~MG~~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~~al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g------~ 537 (1159)
T PRK13030 464 TTGLTQMGGEGVDWIGHAPFTETKHVFQNLGDGTYFHSGSLAIRQAVAAGANITYKILYNDAVAMTGGQPVDG------S 537 (1159)
T ss_pred cceeeccCccchhhceeccccCCCCEEEEeccchhhhcCHHHHHHHHhcCCCeEEEEEeCCcccccCCCCCCC------C
Confidence 22356799999999999888778899999999999997 889999999999999999999999983 222233 3
Q ss_pred CChHH---HHHHhcCCCCCceeEEEc--CHHH----------------HHHHHHhhcCCCCCCeEEE
Q 044559 509 WNYTG---LVDAIHNGEGKCWTTKVF--CEEE----------------LIEAIENATGPKKDCLCFI 554 (585)
Q Consensus 509 ~d~~~---la~a~G~~~~~~~~~~V~--~~~e----------------L~~aL~~a~~~~~~gp~vI 554 (585)
++..+ ++++.|+ +.+.|- ++.+ ..+++++++. +.+|++||
T Consensus 538 i~v~~i~~~~~a~Gv-----~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~-~~~GvsVi 598 (1159)
T PRK13030 538 ISVPQIARQVEAEGV-----SRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELR-ETPGVTVL 598 (1159)
T ss_pred CCHHHHHHHHHhCCC-----cEEEEecCChhhccccccCCCcccccHHHHHHHHHHHh-cCCCcEEE
Confidence 66777 6779999 555543 3333 2335555652 26787776
No 100
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.75 E-value=2e-15 Score=172.59 Aligned_cols=476 Identities=14% Similarity=0.067 Sum_probs=267.8
Q ss_pred CCccCCCCCcHHHHHHHHHHH-------cCC---CEEEecCCCChHHHHHhhhcCC------CCeEEeCcchHHHHHHHh
Q 044559 36 TPLVNPSESTLGRHLARRLVQ-------IGA---TDVFSVPGDFNLTLLDHLIAEP------GLNLIGCCNELNAGYAAD 99 (585)
Q Consensus 36 ~~~~~~~~~~~a~~i~~~L~~-------~GV---~~vFg~PG~~~~~l~~al~~~~------~i~~i~~~~E~~A~~~A~ 99 (585)
+-.....-++|.|+|++.+.+ .|+ .+|-|+||++...+.+.|.+.. +|.+.+..||..|+-+|.
T Consensus 20 ~~~~g~~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~ 99 (1165)
T PRK09193 20 TLERGRVFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVW 99 (1165)
T ss_pred ccccCCeeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHh
Confidence 334445568999999999998 999 9999999999999999986543 499999999999999997
Q ss_pred HHh--------HhcCccEEEEeCChhhHHHHHHHHHhhhcCC----cEEEEeCCCCCcccCCccccccccCCCChhHHHh
Q 044559 100 GYA--------RSRGVGACVVTFTVGGLSVLNAIAGAYSENL----PLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR 167 (585)
Q Consensus 100 Gya--------r~tg~~v~~~tsGpG~~n~~~~l~~A~~~~~----PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~ 167 (585)
|-- +..|.-.+..--|||+--+.-++..+.+.++ -||+|+||.+....... .+-.++..
T Consensus 100 GsQ~~~~~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SSq~---------eqdSr~~~ 170 (1165)
T PRK09193 100 GSQQVNLFPGAKYDGVFGMWYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSSTL---------PHQSEHAF 170 (1165)
T ss_pred hhcccccccceeeccceEEEecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccccc---------hhhhHHHH
Confidence 643 3344423334577998778888888777776 49999999888733221 11122333
Q ss_pred hhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCCCCCCCC-----CCC--CcCCCC-----CCC-
Q 044559 168 CFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSRE-----PVP--FSLSPK-----LSN- 234 (585)
Q Consensus 168 ~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~~~~~~~~~~~-----~~~--~~~~~~-----~~~- 234 (585)
++..+. .....+++++.+....||.++....-||-+..-.++.+....+.... ..+ ...++. ...
T Consensus 171 ~~a~iP--vl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~ 248 (1165)
T PRK09193 171 KAAGMP--VLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDP 248 (1165)
T ss_pred HHcCCc--eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCC
Confidence 333332 34456889999999999999887788999999888866421111100 000 011110 011
Q ss_pred hhh-----HHHHHHHHHHHHHhcC--C--------CEEEcCCcccccchHHHHHHH------HHHhCCceEeCCCCcccc
Q 044559 235 EMG-----LEAAVEAAAEFLNKAV--K--------PVLVAGPKMRVAKACNAFVEL------ADACGYAVAVMPSAKGLV 293 (585)
Q Consensus 235 ~~~-----~~~~v~~~~~~L~~a~--r--------pvIi~G~g~~~~~a~~~l~~l------ae~~~~Pv~tt~~gkg~~ 293 (585)
+.. ....+.++.+.....+ | -+-|+..|..+....++|.+| ++.+|+.++--.+
T Consensus 249 p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~lg~~~~~~~~~gi~ilKvgm----- 323 (1165)
T PRK09193 249 PLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDLGLDEETAARLGIRLYKVGM----- 323 (1165)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHcCCChhhhcccCCCEEEeCC-----
Confidence 011 1112222333221111 0 122333334333344444432 2334455542211
Q ss_pred CCCCCCccccccCCC-CCCc-ccccc-cccCC-Ccc--EEE--EcCCcceecc-----C---CccccccHHHHHHHHHHH
Q 044559 294 PEHHPHFIGTYWGAV-STAF-FSVGY-SLLLK-KEK--AVI--LQPDRVVIAN-----G---PAFGCVLMKDFLKALSKR 357 (585)
Q Consensus 294 ~~~hp~~~g~~~g~~-~~~~-~~~~~-~~~~~-~~~--~i~--vd~d~~~i~~-----~---~~~~~~~~~~~l~~L~~~ 357 (585)
.+|+-........ +... ....- ..+.. ..| ... .+..|..+|+ . ....++++..+...|...
T Consensus 324 --~~PL~~~~i~~Fa~g~~~vlVVEE~~p~iE~qlk~~l~~~~~~~rp~v~GK~~~~g~~llp~~gEl~~~~va~~l~~~ 401 (1165)
T PRK09193 324 --VWPLEPQGVRAFAEGLDEILVVEEKRQIIEYQLKEELYNWPDDVRPRVIGKFDPQGNWLLPAHGELSPAIIAKAIARR 401 (1165)
T ss_pred --CCCCCHHHHHHHHhcCCEEEEEecCchHHHHHHHHHHhhccCCcCceeEeeeCCCCCccCCCcCCcCHHHHHHHHHHH
Confidence 2333211110000 0000 00000 00000 000 000 0000111221 1 122345666666666554
Q ss_pred hccCc------chhh---hhcccc---------CCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccc
Q 044559 358 LKSNT------TAYE---NYHRIY---------VPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQK 419 (585)
Q Consensus 358 l~~~~------~~~~---~~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~ 419 (585)
+.... .... .+.... .+.+.+.-+...+ +..... +|++.++..|+||+.+..+.
T Consensus 402 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~P~fCsGCP---H~~st~-----vp~gs~~~~dIGChtl~~~~ 473 (1165)
T PRK09193 402 LLKLELPGDVRARIAARLAVLEAKEAALALPRVTAARTPYFCSGCP---HNTSTR-----VPEGSRALAGIGCHYMATWM 473 (1165)
T ss_pred hhhcccccccchhhhhcccccccccccccccccCCCCCCCcCCCCC---Ccccee-----cCCCCEEecCcChhhhccCC
Confidence 33210 0000 010000 0001111111111 122222 47889999999999876532
Q ss_pred ccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhccc-HHHHHHHHHhCCceEEEEEeCCcceee-ee
Q 044559 420 LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQDVSTMLRCGQKTIIFLINNGGYTIE-VE 497 (585)
Q Consensus 420 ~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~eL~ta~~~~lpv~ivV~NN~~~~~~-~~ 497 (585)
|.. + .++-+||.+.+.++|.+-...+++||+++|||+|+|+ +..|..|+..+.|++++|+.|+.-+|. .|
T Consensus 474 ---p~~----~-~~~~~MG~eg~~~~G~a~f~~~~hv~a~iGDgTffHSG~~al~~AV~~~~nit~~IL~N~~vAMTGgQ 545 (1165)
T PRK09193 474 ---DRN----T-STFTQMGGEGVPWIGQAPFTDEKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKILYNDAVAMTGGQ 545 (1165)
T ss_pred ---CCC----C-CeeeccCCcchhhceeccccCCCcEEEEeccccchhcCHHHHHHHHhcCCCeEEEEEeCCcccccCCC
Confidence 111 1 3466799999999999888778899999999999997 889999999999999999999999993 23
Q ss_pred ecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc--CHHHH-----------------HHHHHhhcCCCCCCeEEE
Q 044559 498 IHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEEL-----------------IEAIENATGPKKDCLCFI 554 (585)
Q Consensus 498 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL-----------------~~aL~~a~~~~~~gp~vI 554 (585)
-+++. +..+++..++++.|+ +.+.|- ++.++ .+++++++. +.+|++||
T Consensus 546 ~~~g~---~~~~~i~~~~~a~GV-----~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr-~~~GvsVi 612 (1165)
T PRK09193 546 PVDGG---LSVPQITRQLAAEGV-----KRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELR-EIPGVTVL 612 (1165)
T ss_pred CCCCC---cchhhHHHHHHhCCC-----CEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHh-cCCCcEEE
Confidence 33333 356899999999999 455443 44443 234555552 26677776
No 101
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.73 E-value=8.1e-18 Score=166.87 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=105.2
Q ss_pred CCcccccchhHHHHhhhhcCC----CCcEEEEEccchhcc--cHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCC
Q 044559 432 MQYGSIGWSVGATLGYAQSVP----EKRVIACIGDGSFQV--TAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p----~r~vv~v~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
...|+||+++|+|+|++++.+ +++|++++|||+|++ +.++|.++.++++|.+++|+||++|++.... ...
T Consensus 102 ~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~----~~~ 177 (255)
T cd02012 102 VTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPT----DDI 177 (255)
T ss_pred eCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcH----hhc
Confidence 346999999999999999866 899999999999998 5899999999999999999999999873211 123
Q ss_pred CCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCCh
Q 044559 506 IKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
....||.+++++||+ ++++|+ +.++|.++|+++.+ ..++|++|++.|.+..-.
T Consensus 178 ~~~~~~~~~~~a~G~-----~~~~v~G~d~~~l~~al~~a~~-~~~~P~~I~~~t~kg~g~ 232 (255)
T cd02012 178 LFTEDLAKKFEAFGW-----NVIEVDGHDVEEILAALEEAKK-SKGKPTLIIAKTIKGKGV 232 (255)
T ss_pred cCchhHHHHHHHcCC-----eEEEECCCCHHHHHHHHHHHHH-cCCCCEEEEEEeeccccc
Confidence 356899999999999 899999 99999999999985 228999999999875543
No 102
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.70 E-value=4.8e-17 Score=167.25 Aligned_cols=116 Identities=18% Similarity=0.117 Sum_probs=96.9
Q ss_pred CcccccchhHHHHhhhhcC----CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCC
Q 044559 433 QYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVI 506 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~----p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~ 506 (585)
..+.||+++|.|+|++++. ++++|++++|||+|+++ .++|+||+++++|+++||+||+ |++.... ....
T Consensus 120 ~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~-~~~~~~~----~~~~ 194 (341)
T TIGR03181 120 PNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ-WAISVPR----SKQT 194 (341)
T ss_pred CCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCC-Cccccch----hhhh
Confidence 3467999999999998876 89999999999999998 5789999999999999999997 6652110 1112
Q ss_pred CCCChHHHHHHhcCCCCCceeEEEcCHHHH------HHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 507 KNWNYTGLVDAIHNGEGKCWTTKVFCEEEL------IEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 507 ~~~d~~~la~a~G~~~~~~~~~~V~~~~eL------~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
..+||.++|++||+ ++++|+..+++ .+++++++. .++|+|||+.+.+
T Consensus 195 ~~~d~~~~a~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~a~~--~~gP~lIev~t~R 247 (341)
T TIGR03181 195 AAPTLAQKAIAYGI-----PGVQVDGNDVLAVYAVTKEAVERARS--GGGPTLIEAVTYR 247 (341)
T ss_pred CCcCHHHHHhhCCC-----CEEEECCCCHHHHHHHHHHHHHHHHc--CCCCEEEEEEeec
Confidence 45899999999999 99999988875 788888875 7899999999976
No 103
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.68 E-value=1.4e-16 Score=161.12 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=97.3
Q ss_pred CCcccccchhHHHHhhhhcC----CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCC
Q 044559 432 MQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~----p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
.+.|.||+++|.|+|+++|. ++++||+++|||+|++. .++|++|.++++|+++||.||+ |++..... ..
T Consensus 101 ~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~-~~i~~~~~----~~ 175 (293)
T cd02000 101 GGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNG-YAISTPTS----RQ 175 (293)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCC-eeccCCHH----HH
Confidence 45789999999999999885 78999999999999987 3679999999999999999995 98832211 11
Q ss_pred CCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 506 IKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
...+||.++|++||+ ++++|+ +++++.++++++++ .+.++|+||||.+.+
T Consensus 176 ~~~~~~~~~a~a~G~-----~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r 229 (293)
T cd02000 176 TAGTSIADRAAAYGI-----PGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYR 229 (293)
T ss_pred hCCccHHHHHHhCCC-----CEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Confidence 246899999999999 899997 46677777777663 136799999999875
No 104
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.67 E-value=7.2e-17 Score=144.77 Aligned_cols=111 Identities=32% Similarity=0.520 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------
Q 044559 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF--------- 312 (585)
Q Consensus 242 v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~--------- 312 (585)
|++++++|.+||||+|++|.++.++++.+++++|+|++|+||++|+++||+||++||+|+|.. |..+...
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~-g~~~~~~~~~~l~~aD 79 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYL-GLFGSPAANEALEQAD 79 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEES-CGGSCHHHHHHHHHSS
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccC-CccCCHHHHHHhcCCC
Confidence 578999999999999999999999999999999999999999999999999999999999943 4443221
Q ss_pred ------------ccccc-cccCCCccEEEEcCCcceeccCCcccc----ccHHHHHHHH
Q 044559 313 ------------FSVGY-SLLLKKEKAVILQPDRVVIANGPAFGC----VLMKDFLKAL 354 (585)
Q Consensus 313 ------------~~~~~-~~~~~~~~~i~vd~d~~~i~~~~~~~~----~~~~~~l~~L 354 (585)
.+.++ ..+.++.++||||.|+.+++ +.+..+ .|++.+|++|
T Consensus 80 lvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~-~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 80 LVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIG-KNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp EEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTT-SSSEESEEEESHHHHHHHHH
T ss_pred EEEEECCCCccccccccccccCCCCEEEEEECCHHHhC-CCCCCCEEEEECHHHHhhCC
Confidence 12222 22444458999999999997 444333 3788888876
No 105
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.67 E-value=1.6e-13 Score=156.73 Aligned_cols=440 Identities=14% Similarity=0.047 Sum_probs=244.7
Q ss_pred ccCCCCCcHHHHHHHHH-------HHcCCC---EEEecCCCChHHHHHhhhcC------CCCeEEeCcchHHHHHHHhHH
Q 044559 38 LVNPSESTLGRHLARRL-------VQIGAT---DVFSVPGDFNLTLLDHLIAE------PGLNLIGCCNELNAGYAADGY 101 (585)
Q Consensus 38 ~~~~~~~~~a~~i~~~L-------~~~GV~---~vFg~PG~~~~~l~~al~~~------~~i~~i~~~~E~~A~~~A~Gy 101 (585)
.....-++|.|+|++.+ .+.|++ +|-|+||++...+.++|.+. .+|.+.+..||..|+-|..|-
T Consensus 25 ~~g~~~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gs 104 (1186)
T PRK13029 25 ERGRIYISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGS 104 (1186)
T ss_pred ccCCEeecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhh
Confidence 34455689999999999 999999 99999999999999998543 259999999999999999886
Q ss_pred hHh--------cCccEEEEeCChhhHHHHHHHHHhh--hcCC--cEEEEeCCCCCcccCCccccccccCCCChhHHHhhh
Q 044559 102 ARS--------RGVGACVVTFTVGGLSVLNAIAGAY--SENL--PLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 169 (585)
Q Consensus 102 ar~--------tg~~v~~~tsGpG~~n~~~~l~~A~--~~~~--PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~ 169 (585)
.++ .|.-.+...-|||+--+.-++..+. ..++ -||+|+||.+....... .+-.+...++
T Consensus 105 q~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SSq~---------eqdSr~~~~~ 175 (1186)
T PRK13029 105 QQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSSSV---------AHQSDHTFIA 175 (1186)
T ss_pred hhcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccccC---------HHHHHHHHHH
Confidence 643 2331233456788776777887554 4444 39999999887733221 1111222333
Q ss_pred cceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCCCCCCCC-----CCC--CcCCC-----CCCC-hh
Q 044559 170 QTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSRE-----PVP--FSLSP-----KLSN-EM 236 (585)
Q Consensus 170 ~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~~~~~~~~~~~-----~~~--~~~~~-----~~~~-~~ 236 (585)
..+. .....+++++.+....||.++....-||-+..-.++.+....+.... ..+ +..++ .... +.
T Consensus 176 a~iP--vl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~ 253 (1186)
T PRK13029 176 WGIP--VLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPL 253 (1186)
T ss_pred cCCc--eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcccccCCccccccccCCCcH
Confidence 3332 34456889999999999999887788999999999876532221100 001 11111 0111 01
Q ss_pred h-----HHHHHHHHHHHHHhcCC----------CEEEcCCcccccchHHHHHHH------HHHhCCceEeCCCCccccCC
Q 044559 237 G-----LEAAVEAAAEFLNKAVK----------PVLVAGPKMRVAKACNAFVEL------ADACGYAVAVMPSAKGLVPE 295 (585)
Q Consensus 237 ~-----~~~~v~~~~~~L~~a~r----------pvIi~G~g~~~~~a~~~l~~l------ae~~~~Pv~tt~~gkg~~~~ 295 (585)
. ....+..+.+.....+- -+-|+-.|..+....++|.+| ++.+|+.++--.+
T Consensus 254 ~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ilKvgm------- 326 (1186)
T PRK13029 254 AQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLLKVGC------- 326 (1186)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCCEEEeCC-------
Confidence 1 11122222222211110 122223333333344444432 2334555543211
Q ss_pred CCCCccccc----cCCCC-------CCc-------ccccccccCCCccEEEEcCC---c----c--eeccCCcc---ccc
Q 044559 296 HHPHFIGTY----WGAVS-------TAF-------FSVGYSLLLKKEKAVILQPD---R----V--VIANGPAF---GCV 345 (585)
Q Consensus 296 ~hp~~~g~~----~g~~~-------~~~-------~~~~~~~~~~~~~~i~vd~d---~----~--~i~~~~~~---~~~ 345 (585)
.+||-.... .|... .+. .-++|..-.. .-|.=..| . . .-| ...+ .++
T Consensus 327 ~~PL~~~~i~~Fa~g~d~vlVVEE~~p~iE~qlk~~l~~~~~~~r--p~v~GK~~~~~~~~~~~~~~~g-~~llp~~gEL 403 (1186)
T PRK13029 327 VWPLDPQSVREFAQGLEEVLVVEEKRAVIEYQLKEELYNWREDVR--PAIFGKFDHRDGAGGEWSVPAG-RWLLPAHAEL 403 (1186)
T ss_pred CCCCCHHHHHHHHhcCCEEEEEecCchHHHHHHHHHHhhccCCcC--CeeEeccccccccccccccccc-CCCCCcccCc
Confidence 123321111 00000 000 0001110000 00111111 0 0 001 1122 345
Q ss_pred cHHHHHHHHHHHhccC---c---chhh---hhccccC-----CC----CCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEE
Q 044559 346 LMKDFLKALSKRLKSN---T---TAYE---NYHRIYV-----PE----GQPPKCEPKEPLRVNVLFQHIQKMLSSETAVI 407 (585)
Q Consensus 346 ~~~~~l~~L~~~l~~~---~---~~~~---~~~~~~~-----~~----~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv 407 (585)
++..+...|...+... . .... .+..... +. +.+.-+.. ..+....+ +|++.++.
T Consensus 404 ~p~~va~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~R~P~fCsG---CPH~~st~-----~~~gs~~~ 475 (1186)
T PRK13029 404 SPALIAKAIARRLAALGLPADVAARMDARVADIEAKERAAAQPRLLTERKPWFCSG---CPHNTSTR-----VPEGSRAL 475 (1186)
T ss_pred CHHHHHHHHHHHHHhcCCCcccchhhhhhhhhcccccccccccccCCCCCCCcCCC---CCCchhhc-----cCCCCEEe
Confidence 6666666665554211 0 0000 1100000 00 11111111 22222222 25788899
Q ss_pred ecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhccc-HHHHHHHHHhCCceEEEE
Q 044559 408 AETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQDVSTMLRCGQKTIIFL 486 (585)
Q Consensus 408 ~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~eL~ta~~~~lpv~ivV 486 (585)
.|+|++.+..+..+. ..++-.||.+.+.++|.+-...+++||..+|||+|+|+ +..|-.|+..+.|++++|
T Consensus 476 ~dIGChtl~~~~~~~--------~~~~~~MGgeg~~~~G~a~f~~~~hv~aniGDgTffHSG~~alr~AV~~~~nit~kI 547 (1186)
T PRK13029 476 AGIGCHYMAMWMDRS--------TEGFSQMGGEGVAWIGQMPFSRRRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKI 547 (1186)
T ss_pred cCcCHHHHhhccccc--------cceeeccCcchhhheeecccCCCCCEEEEeccccchhcCHHHHHHHHhcCCCEEEEE
Confidence 999999876543211 23466799999999999888778899999999999998 889999999999999999
Q ss_pred EeCCcceee-eeecCCCcCCCCCCChHH---HHHHhcC
Q 044559 487 INNGGYTIE-VEIHDGPYNVIKNWNYTG---LVDAIHN 520 (585)
Q Consensus 487 ~NN~~~~~~-~~~~~~~~~~~~~~d~~~---la~a~G~ 520 (585)
+.|+.-+|. .|-++| .++... +.++.|+
T Consensus 548 L~N~avAMTGgQp~~G------~~~v~~i~~~~~a~GV 579 (1186)
T PRK13029 548 LYNDAVAMTGGQPVDG------VLTVPQIARQVHAEGV 579 (1186)
T ss_pred EeCcchhccCCCCCCC------cCCHHHHHHHHHhCCc
Confidence 999999983 222233 355666 6699998
No 106
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.64 E-value=6.3e-16 Score=157.38 Aligned_cols=119 Identities=14% Similarity=0.069 Sum_probs=94.5
Q ss_pred CCcccccchhHHHHhhhhcC----CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCC
Q 044559 432 MQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~----p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
...|+||+++|.|+|+++|. +++.|++++|||+|++. ..+|.++.++++|+++||+||+ |++..... ..
T Consensus 107 ~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~-yg~s~~~~----~~ 181 (315)
T TIGR03182 107 GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNL-YAMGTSVE----RS 181 (315)
T ss_pred cCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCC-ccccCCHH----HH
Confidence 45789999999999999998 78999999999999876 3679999999999999999995 99832111 01
Q ss_pred CCCCChHHHHHHhcCCCCCceeEEEcC--HHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 506 IKNWNYTGLVDAIHNGEGKCWTTKVFC--EEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~V~~--~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
....||.++|++||+ ++++|+. ..++..+++++++ .+.++|+|||+.+.+
T Consensus 182 ~~~~~~a~~A~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 235 (315)
T TIGR03182 182 SSVTDLYKRGESFGI-----PGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYR 235 (315)
T ss_pred hCCcCHHHHHHhCCC-----CEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCc
Confidence 245799999999999 8999986 4444444444432 137899999999975
No 107
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.61 E-value=2.1e-15 Score=154.71 Aligned_cols=116 Identities=20% Similarity=0.132 Sum_probs=94.8
Q ss_pred CCcccccchhHHHHhhhhcC-----------CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCC-cceeeee
Q 044559 432 MQYGSIGWSVGATLGYAQSV-----------PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNG-GYTIEVE 497 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~-----------p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~-~~~~~~~ 497 (585)
++++.||+++|.|+|+++|. |++.|+|++|||+|+.. ..+|.+|.++++|+++||.||+ +++....
T Consensus 125 ~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~ 204 (341)
T CHL00149 125 GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHH 204 (341)
T ss_pred CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchh
Confidence 56799999999999999994 78999999999999742 2369999999999999999999 4554210
Q ss_pred ecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHH------HHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 498 IHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEEL------IEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 498 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL------~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
......||.++|++||+ .+++|+..+.+ ..+++++.. .++|+|||+.|.+
T Consensus 205 ------~~~~~~d~a~~a~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~tyR 260 (341)
T CHL00149 205 ------RSTSIPEIHKKAEAFGL-----PGIEVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALTYR 260 (341)
T ss_pred ------heeCCccHHHHHHhCCC-----CEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEEec
Confidence 01135899999999999 89999987754 677777775 7899999999954
No 108
>PRK05899 transketolase; Reviewed
Probab=99.60 E-value=2.2e-15 Score=167.98 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=102.8
Q ss_pred CCcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhcccH-HH-HHHHHHhCCceEEEEEeCCcceee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQVTA-QD-VSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~~~~-~e-L~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|+|+|+++|.+ +++|+|++|||+|+++. +| |.+|.++++|.+++|+||++|++.
T Consensus 115 ~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~ 194 (624)
T PRK05899 115 TTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISID 194 (624)
T ss_pred eCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccc
Confidence 348999999999999999977 78999999999999985 55 999999999999999999999983
Q ss_pred eeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 496 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
. ........||.+++++||+ ++++|+ +.++|.++|+++.. .++|+||+|.|.+
T Consensus 195 ~-----~~~~~~~~~~~~~~~a~G~-----~~~~VdG~d~~~l~~al~~a~~--~~~P~vI~v~t~k 249 (624)
T PRK05899 195 G-----PTEGWFTEDVKKRFEAYGW-----HVIEVDGHDVEAIDAAIEEAKA--STKPTLIIAKTII 249 (624)
T ss_pred c-----cccccccccHHHHhccCCC-----eEEEECCCCHHHHHHHHHHHHh--cCCCEEEEEEeEe
Confidence 2 2223345899999999999 999999 99999999999985 6799999999965
No 109
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.47 E-value=2.3e-13 Score=142.73 Aligned_cols=116 Identities=17% Similarity=0.052 Sum_probs=92.8
Q ss_pred CCcccccchhHHHHhhhhc-----------CCCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCC-cceeeee
Q 044559 432 MQYGSIGWSVGATLGYAQS-----------VPEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNG-GYTIEVE 497 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA-----------~p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~-~~~~~~~ 497 (585)
++++.||+++|.|+|+++| .+++.|+|++|||++... ..+|.+|..+++|+++||.||+ +++....
T Consensus 191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~ 270 (433)
T PLN02374 191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 270 (433)
T ss_pred CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceee
Confidence 5678999999999999998 367899999999999865 4589999999999999999887 3343211
Q ss_pred ecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHH------HHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 498 IHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEEL------IEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 498 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL------~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
. .....||.+.|++||+ .+++|+..+.+ .++++++.+ .++|+|||+.+-+
T Consensus 271 ~------~t~~~dia~~A~a~G~-----~~~~VDG~D~~av~~a~~~A~~~Ar~--g~gP~LIe~~tyR 326 (433)
T PLN02374 271 R------ATSDPEIWKKGPAFGM-----PGVHVDGMDVLKVREVAKEAIERARR--GEGPTLVECETYR 326 (433)
T ss_pred e------ccCCCCHHHHHHhcCC-----cEEEECCCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEe
Confidence 1 0135789999999999 99999866544 467777764 7899999999854
No 110
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.47 E-value=1.3e-12 Score=129.91 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=127.2
Q ss_pred CCcCHHHHHHHHHhhCCCCCEEEecCCcccccccccc-ccCCCeeeecCCcccccchhHHHHhhhhc----CCCCcEEEE
Q 044559 385 EPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLK-LPKGCGYEFQMQYGSIGWSVGATLGYAQS----VPEKRVIAC 459 (585)
Q Consensus 385 ~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~-~~~~~~~~~~~~~g~mG~~lpaAiGaalA----~p~r~vv~v 459 (585)
.......+++.|.+.+.++.+++.++|++..+...+. .| |-.+...+.||-+.+.|.|.+.| .++++||++
T Consensus 22 ~GCg~~~~~~~l~~a~g~~~vi~~~iGC~s~~~~~~p~~~----~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~ 97 (299)
T PRK11865 22 AGCGAAIAMRLALKALGKNTVIVVATGCLEVITTPYPETA----WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAI 97 (299)
T ss_pred cCCCcHHHHHHHHHHcCCCEEEEeCCCcccccCccCcCCc----cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3456677888999999889999999999987632221 11 22234467788999999998877 456789999
Q ss_pred Eccchhcc-cHHHHHHHHHhCCceEEEEEeCCcceee-eeecC----C------C------cCCCCCCChHHHHHHhcCC
Q 044559 460 IGDGSFQV-TAQDVSTMLRCGQKTIIFLINNGGYTIE-VEIHD----G------P------YNVIKNWNYTGLVDAIHNG 521 (585)
Q Consensus 460 ~GDGsf~~-~~~eL~ta~~~~lpv~ivV~NN~~~~~~-~~~~~----~------~------~~~~~~~d~~~la~a~G~~ 521 (585)
.|||+|.. .++.|..+++.+.|+++||+||+.|++. -|... + + ....+..|+..++.++|+
T Consensus 98 ~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~- 176 (299)
T PRK11865 98 GGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGI- 176 (299)
T ss_pred eCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCC-
Confidence 99998876 4889999999999999999999999982 11111 0 0 012247899999999998
Q ss_pred CCCceeE---EEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 522 EGKCWTT---KVFCEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 522 ~~~~~~~---~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
.|+ .+.++.++.++|++|++ .+||.+|+|...-
T Consensus 177 ----~YVA~~~~~~~~~l~~~i~~A~~--~~Gps~I~v~sPC 212 (299)
T PRK11865 177 ----PYVATASIGYPEDFMEKVKKAKE--VEGPAYIQVLQPC 212 (299)
T ss_pred ----CEEEEEeCCCHHHHHHHHHHHHh--CCCCEEEEEECCC
Confidence 444 45689999999999996 8899999999764
No 111
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.44 E-value=4.6e-13 Score=126.91 Aligned_cols=112 Identities=20% Similarity=0.278 Sum_probs=90.6
Q ss_pred CCcccccchhHHHHhhhhcCC----CCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCC
Q 044559 432 MQYGSIGWSVGATLGYAQSVP----EKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p----~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
...|++|.++|.|+|++++.+ +++|++++|||+|+ +...+|.+|.++++|+++ |+||++|++. +...
T Consensus 72 ~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~-vvdnN~~~~~-----~~~~- 144 (195)
T cd02007 72 FGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIV-ILNDNEMSIS-----PNVG- 144 (195)
T ss_pred ECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEE-EEECCCcccC-----CCCC-
Confidence 457899999999999999865 78999999999998 778999999999889877 5666667651 1111
Q ss_pred CCCCChHHHHHHhcCCCCCceeE---EEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCC
Q 044559 506 IKNWNYTGLVDAIHNGEGKCWTT---KVFCEEELIEAIENATGPKKDCLCFIEVLVHKD 561 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~---~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~ 561 (585)
++..+++++|+ ... ...+.+++.++++++.+ .++|++|++.|.+.
T Consensus 145 ----~~~~~~~a~G~-----~~~~~vdG~d~~~l~~a~~~a~~--~~~P~~I~~~T~kg 192 (195)
T cd02007 145 ----TPGNLFEELGF-----RYIGPVDGHNIEALIKVLKEVKD--LKGPVLLHVVTKKG 192 (195)
T ss_pred ----CHHHHHHhcCC-----CccceECCCCHHHHHHHHHHHHh--CCCCEEEEEEEecc
Confidence 57888999998 443 33589999999999885 78999999998753
No 112
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.37 E-value=9.5e-12 Score=123.66 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=122.5
Q ss_pred cCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcC-----CCCcEEEEEc
Q 044559 387 LRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSV-----PEKRVIACIG 461 (585)
Q Consensus 387 i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~-----p~r~vv~v~G 461 (585)
....-+++.+.+.+.++.+++.|+|++......+.. . .+-.+.-...||.+++.|.|+++|. ++..|+++.|
T Consensus 24 CG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~--~-~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~G 100 (300)
T PRK11864 24 CGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPK--S-PLTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWAG 100 (300)
T ss_pred CCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCc--c-cccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEc
Confidence 344556678888888899999999998653221111 1 0122334578999999999999885 4566777999
Q ss_pred cchhcc-cHHHHHHHHHhCCceEEEEEeCCcceee-eeecC----C------Cc-CCCCCCChHHHHHHhcCCCCCceeE
Q 044559 462 DGSFQV-TAQDVSTMLRCGQKTIIFLINNGGYTIE-VEIHD----G------PY-NVIKNWNYTGLVDAIHNGEGKCWTT 528 (585)
Q Consensus 462 DGsf~~-~~~eL~ta~~~~lpv~ivV~NN~~~~~~-~~~~~----~------~~-~~~~~~d~~~la~a~G~~~~~~~~~ 528 (585)
||++.. ..+.|..|+..++|+++||+||+.|++. .|.+. + +. ......|..+++.++|+ .|+
T Consensus 101 DG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~-----~yV 175 (300)
T PRK11864 101 DGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKV-----PYV 175 (300)
T ss_pred cCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCC-----CEE
Confidence 999866 5888999999999999999999999982 22221 1 11 12357899999999998 454
Q ss_pred E---EcCHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 529 K---VFCEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 529 ~---V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
. +.++.++.+++++|++ .+||.+|++...-
T Consensus 176 A~~~~~~~~~~~~~i~~A~~--~~Gps~I~~~spC 208 (300)
T PRK11864 176 ATASIAYPEDFIRKLKKAKE--IRGFKFIHLLAPC 208 (300)
T ss_pred EEEeCCCHHHHHHHHHHHHh--CCCCEEEEEeCCC
Confidence 2 3578999999999997 8999999998764
No 113
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.36 E-value=2.5e-12 Score=142.24 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=97.9
Q ss_pred CCcccccchhHHHHhhhhcC-----CCCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 432 MQYGSIGWSVGATLGYAQSV-----PEKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~-----p~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
...|++|.++|.|+|+++|. ++++|+|++|||+++ |+.++|.+|.++++|+ ++|+||++|++.... +....
T Consensus 114 ~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nl-i~IvdnN~~~i~~~~-~~~~~ 191 (580)
T PRK05444 114 FGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDL-IVILNDNEMSISPNV-GALSN 191 (580)
T ss_pred ECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCE-EEEEECCCCcCCCcc-hhhhh
Confidence 45689999999999999885 678999999999995 8899999999999998 688888888762110 00000
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEE---cCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKV---FCEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V---~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
.+...++.+++++||+ ++..+ .+.+++.++|++++. .++|++|++.|.+..-
T Consensus 192 ~~~~~~~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~T~kg~G 246 (580)
T PRK05444 192 YLARLRSSTLFEELGF-----NYIGPIDGHDLDALIETLKNAKD--LKGPVLLHVVTKKGKG 246 (580)
T ss_pred hhccccHHHHHHHcCC-----CeeeeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEecCCcC
Confidence 0233677789999999 77753 689999999999885 6799999999987443
No 114
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.09 E-value=4.5e-10 Score=124.94 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=92.7
Q ss_pred CcccccchhHHHHhhhhcCCCCcEEEEEccchh--cccHHHHHHHHHhCCceEEEEEeCCcceeeeee----------c-
Q 044559 433 QYGSIGWSVGATLGYAQSVPEKRVIACIGDGSF--QVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI----------H- 499 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf--~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~----------~- 499 (585)
+.|+||+++|+|+|++++.++++|+|++|||+| .+...++++|.++++|+++ |+||++|.+.... .
T Consensus 121 ~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~-I~dnN~~~i~~~~~~~~~~l~~~~~ 199 (641)
T PRK12571 121 SSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIV-ILNDNEMSIAPPVGALAAYLSTLRS 199 (641)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEE-EEECCCeeecCCccHHHHHHHHHhc
Confidence 467899999999999999999999999999999 5678999999999998755 7788888762110 0
Q ss_pred CCCcC-------C----CC-CC---------------ChHHHHHHhcCCCCCceeE-EEc--CHHHHHHHHHhhcCCCCC
Q 044559 500 DGPYN-------V----IK-NW---------------NYTGLVDAIHNGEGKCWTT-KVF--CEEELIEAIENATGPKKD 549 (585)
Q Consensus 500 ~~~~~-------~----~~-~~---------------d~~~la~a~G~~~~~~~~~-~V~--~~~eL~~aL~~a~~~~~~ 549 (585)
...|. + ++ .. -.....++||+ +++ .|+ +.++|.++|+++.. ..+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~-----~~~~~vdGhd~~~l~~al~~ak~-~~~ 273 (641)
T PRK12571 200 SDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGF-----TYVGPIDGHDMEALLSVLRAARA-RAD 273 (641)
T ss_pred CcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCC-----EEECccCCCCHHHHHHHHHHHHh-CCC
Confidence 11111 0 00 00 01367899999 888 575 89999999998863 247
Q ss_pred CeEEEEEEcCCCC
Q 044559 550 CLCFIEVLVHKDD 562 (585)
Q Consensus 550 gp~vIeV~v~~~~ 562 (585)
+|++|.+.|-+..
T Consensus 274 ~P~~I~~~T~kGk 286 (641)
T PRK12571 274 GPVLVHVVTEKGR 286 (641)
T ss_pred CCEEEEEEecCcc
Confidence 8999999998744
No 115
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=99.00 E-value=4.9e-09 Score=104.79 Aligned_cols=124 Identities=21% Similarity=0.193 Sum_probs=98.7
Q ss_pred cccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeec-----CC------
Q 044559 434 YGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH-----DG------ 501 (585)
Q Consensus 434 ~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----~~------ 501 (585)
.+.-|-+++.|.|.++|+++..||++.||| ++-...+.|..+.+.|.+|++||+||..|++..-+. .|
T Consensus 69 hs~~gra~a~atGik~A~~~l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G~~t~t~ 148 (294)
T COG1013 69 HSLHGRAAAVATGIKLANPALSVIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKGAKTKTT 148 (294)
T ss_pred eeccCcchhhHHHHHHhccCCeEEEEecchhHhhhhhHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCCceeeec
Confidence 456788999999999999999999999999 777889999999999999999999999999821111 01
Q ss_pred C-cCCC-CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCC
Q 044559 502 P-YNVI-KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKD 561 (585)
Q Consensus 502 ~-~~~~-~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~ 561 (585)
+ .... ...|...+|-++|.. .+-...+.++.++...+++|++ ..||.+|+|...--
T Consensus 149 p~Gk~~~~k~d~~~la~a~G~~--yVAr~~~~~~~~l~~~i~kA~~--~~Gps~I~v~sPC~ 206 (294)
T COG1013 149 PYGKRSEKKKDPGLLAMAAGAT--YVARASVGDPKDLTEKIKKAAE--HKGPSFIDVLSPCP 206 (294)
T ss_pred CCCCCcCCCCCHHHHHHHCCCC--eEEEecccCHHHHHHHHHHHHh--ccCCeEEEEecCCC
Confidence 1 1122 456999999999982 1112234579999999999997 88999999997643
No 116
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.98 E-value=2e-08 Score=104.76 Aligned_cols=163 Identities=14% Similarity=0.050 Sum_probs=127.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE---PGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 119 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~ 119 (585)
-++|.++++....+.|++.++++|+++.+++.+.|.+. -+..++..-+|.+|..||.|-+.+ |.=++..|||||++
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~a-G~Ra~TaTSg~Gl~ 84 (376)
T PRK08659 6 FLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWA-GAKAMTATSGPGFS 84 (376)
T ss_pred EeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhh-CCCeEeecCCCcHH
Confidence 47999999999999999999999999999999988653 246899999999999999996655 55467779999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHH-hhhc---ceeEEEEEeCChhhHHHHHHHHHHH
Q 044559 120 SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQEL-RCFQ---TVTCYQAVVNNLEDAHELIDTAVST 195 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~-~~~~---~~tk~~~~v~~~~~~~~~l~~A~~~ 195 (585)
=++-++.-|...++|++++..+++....+-- .+ .. | .|+. ..+. .+..-.....+++++.++..+||++
T Consensus 85 lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p--~~-~~---q-~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~l 157 (376)
T PRK08659 85 LMQENIGYAAMTETPCVIVNVQRGGPSTGQP--TK-PA---Q-GDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNL 157 (376)
T ss_pred HHHHHHHHHHHcCCCEEEEEeecCCCCCCCC--CC-cC---c-HHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHH
Confidence 9999998888889999999999876533211 00 11 1 1222 2222 3334456667899999999999999
Q ss_pred hhhcCCcEEEEecCCCCC
Q 044559 196 ALKESKPVYISVACNLPA 213 (585)
Q Consensus 196 a~~~~GPV~i~iP~dv~~ 213 (585)
|...+-||.+..-.-+-+
T Consensus 158 AE~~~~PViv~~D~~lsh 175 (376)
T PRK08659 158 AEKYRTPVIVLADEVVGH 175 (376)
T ss_pred HHHHCCCEEEEechHhhC
Confidence 998888999998875543
No 117
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.97 E-value=1.4e-08 Score=105.48 Aligned_cols=167 Identities=15% Similarity=0.048 Sum_probs=127.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhh
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE---PGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGG 118 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~ 118 (585)
.-++|.++++......|++.+.++|+++.+++.+.|.+. -+..++.+-+|.+|..||.|-+.+..| ++..|||||.
T Consensus 4 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R-a~taTSg~G~ 82 (375)
T PRK09627 4 IISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK-SMTASSGPGI 82 (375)
T ss_pred eEechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC-EEeecCCchH
Confidence 347999999999999999999999999999999988652 367899999999999999996655444 6677999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHH-hhhcceeEEEEEeCChhhHHHHHHHHHHHhh
Q 044559 119 LSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQEL-RCFQTVTCYQAVVNNLEDAHELIDTAVSTAL 197 (585)
Q Consensus 119 ~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~-~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~ 197 (585)
+=+.=.+.-|...++|++++..+++....|- ++.. .+ .|...|. .-...+.+-.....+++++.+...+||++|.
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~-p~~~-~q--~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE 158 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGL-PTRV-AQ--GDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAE 158 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCC-CCcc-ch--HHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHH
Confidence 9888899999999999999999976442221 0000 00 0111111 1111233345666789999999999999999
Q ss_pred hcCCcEEEEecCCCCC
Q 044559 198 KESKPVYISVACNLPA 213 (585)
Q Consensus 198 ~~~GPV~i~iP~dv~~ 213 (585)
.-+-||.+..-..+-+
T Consensus 159 ~~~~PViv~~D~~lsh 174 (375)
T PRK09627 159 RFMTPVFLLLDETVGH 174 (375)
T ss_pred HHcCceEEecchHHhC
Confidence 7789999998876543
No 118
>PLN02790 transketolase
Probab=98.96 E-value=3.3e-09 Score=118.52 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=94.4
Q ss_pred CCcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|.+|.+++.|+|.++|.. +..|+|++|||+++-. ...+..|..++||-+|+|+||++|.+.
T Consensus 102 ~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~ 181 (654)
T PLN02790 102 VTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISID 181 (654)
T ss_pred ccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCcccc
Confidence 456889999999999988754 4679999999999874 556888899999989999999999872
Q ss_pred eeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEE----cCHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 496 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKV----FCEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V----~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+.......-++.+.+++||+ +++.| .+.++|.++++++.+ ..++|+||++.|.+
T Consensus 182 -----~~~~~~~~~~~~~~f~a~G~-----~~~~vdgg~hd~~~l~~a~~~a~~-~~~~P~lI~~~T~k 239 (654)
T PLN02790 182 -----GDTEIAFTEDVDKRYEALGW-----HTIWVKNGNTDYDEIRAAIKEAKA-VTDKPTLIKVTTTI 239 (654)
T ss_pred -----CCcccccchhHHHHHHHcCC-----eEEEECCCCCCHHHHHHHHHHHHh-cCCCeEEEEEEEee
Confidence 21111123577899999999 89999 478899999998873 25799999999964
No 119
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.93 E-value=3.2e-08 Score=102.33 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=125.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE---PGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 119 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~ 119 (585)
-++|.++++....+.|++.+.++|+++.+++++.|.+. -+..++.+-+|.+|..||.|-+.+..| ++..|||||.+
T Consensus 6 ~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R-a~taTSg~Gl~ 84 (352)
T PRK07119 6 LMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR-VMTSSSSPGIS 84 (352)
T ss_pred eehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC-EEeecCcchHH
Confidence 58999999999999999999999999999999988652 246899999999999999996665444 56668999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhh---c-----ceeEEEEEeCChhhHHHHHHH
Q 044559 120 SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF---Q-----TVTCYQAVVNNLEDAHELIDT 191 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~---~-----~~tk~~~~v~~~~~~~~~l~~ 191 (585)
-+.-++.-|...++|++++..+++....+. .+ .+|-+++ + .+-.-.....+++++.++..+
T Consensus 85 lm~E~l~~a~~~e~P~v~v~v~R~~p~~g~-------t~----~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~ 153 (352)
T PRK07119 85 LKQEGISYLAGAELPCVIVNIMRGGPGLGN-------IQ----PSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTML 153 (352)
T ss_pred HHHHHHHHHHHccCCEEEEEeccCCCCCCC-------Cc----chhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHH
Confidence 999999999999999888888776432211 11 1222221 1 222345566789999999999
Q ss_pred HHHHhhhcCCcEEEEecCCCCC
Q 044559 192 AVSTALKESKPVYISVACNLPA 213 (585)
Q Consensus 192 A~~~a~~~~GPV~i~iP~dv~~ 213 (585)
||++|...+-||.+..-..+-+
T Consensus 154 Af~lAE~~~~PViv~~D~~lsh 175 (352)
T PRK07119 154 AFDLADKYRNPVMVLGDGVLGQ 175 (352)
T ss_pred HHHHHHHhCCCEEEEcchhhhC
Confidence 9999998888999998876543
No 120
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.91 E-value=1.9e-08 Score=110.60 Aligned_cols=166 Identities=17% Similarity=0.065 Sum_probs=129.1
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChh
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE---PGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVG 117 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG 117 (585)
...++|.++++....+.|++.++++|+++.+++.+.|.+. .++.++.+-+|.+|..||.|-+.+ |.=++..|||||
T Consensus 193 ~~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~a-G~Ra~taTSg~G 271 (562)
T TIGR03710 193 RILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYA-GARAMTATSGPG 271 (562)
T ss_pred EEEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhc-CCceeecCCCCC
Confidence 4558999999999999999999999999999999988653 369999999999999999996555 554667799999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHH-Hhhhc---ceeEEEEEeCChhhHHHHHHHHH
Q 044559 118 GLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE-LRCFQ---TVTCYQAVVNNLEDAHELIDTAV 193 (585)
Q Consensus 118 ~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq-~~~~~---~~tk~~~~v~~~~~~~~~l~~A~ 193 (585)
+.=+.-++.-|...++|++++.++++....+-. .+..| .|. ...+. .+-.-.....+++++.++..+||
T Consensus 272 l~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~------t~~eq-~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af 344 (562)
T TIGR03710 272 FALMTEALGLAGMTETPLVIVDVQRGGPSTGLP------TKTEQ-SDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAF 344 (562)
T ss_pred hhHhHHHHhHHHhccCCEEEEEcccCCCCCCCC------CCccH-HHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHH
Confidence 998889999999999999999999986533211 01001 111 11222 11223445578899999999999
Q ss_pred HHhhhcCCcEEEEecCCCCCC
Q 044559 194 STALKESKPVYISVACNLPAI 214 (585)
Q Consensus 194 ~~a~~~~GPV~i~iP~dv~~~ 214 (585)
++|..-+-||.+..-..+.+.
T Consensus 345 ~lAe~~~~PViv~~D~~l~~~ 365 (562)
T TIGR03710 345 NLAEKYQTPVIVLSDQYLANS 365 (562)
T ss_pred HHHHHhcCCEEEEechHHhCC
Confidence 999988899999988776543
No 121
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=98.85 E-value=2.1e-08 Score=85.48 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=125.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
.|++.+++.+.|++.||+++..+|-+....++.-++.++.|..|.+..|..+...+.|.+.+.++ +.++..|| ..|.
T Consensus 3 kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsG--lGNs 80 (172)
T COG4032 3 KVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSG--LGNS 80 (172)
T ss_pred ccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccC--cchH
Confidence 47899999999999999999999999999999999888899999888888888899998888778 77777766 5599
Q ss_pred HHHHHHhhh-cCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcC
Q 044559 122 LNAIAGAYS-ENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKES 200 (585)
Q Consensus 122 ~~~l~~A~~-~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 200 (585)
+++++.-+. -++|++.|.+.+.....+-... -..| . ..-++++..---++++..|++..+++..|+..|....
T Consensus 81 iNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQ--VpmG--r--~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s 154 (172)
T COG4032 81 INALASLYVTYKIPLLMLASHRGVLKEGIEAQ--VPMG--R--ALPKILEGLELPTYTIIGPEEALPLIENAILDAFENS 154 (172)
T ss_pred HHHHHHHHHHhccchhhhhhccchhhcCCccc--cccc--h--hhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcC
Confidence 999998875 7899999998776543221100 0011 0 1123333333346778899999999999999999888
Q ss_pred CcEEEEecCCCC
Q 044559 201 KPVYISVACNLP 212 (585)
Q Consensus 201 GPV~i~iP~dv~ 212 (585)
.||-+-+...++
T Consensus 155 ~pv~vlls~~~W 166 (172)
T COG4032 155 RPVAVLLSPKYW 166 (172)
T ss_pred CceEEEechHHh
Confidence 898877765554
No 122
>PRK12754 transketolase; Reviewed
Probab=98.85 E-value=1.4e-08 Score=112.81 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=93.9
Q ss_pred CCcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|.+|.+++.|+|.++|.. +.+|+|++|||+++-. ...+..|.+++||.+|+|++|+++.+
T Consensus 111 ~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~i- 189 (663)
T PRK12754 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISI- 189 (663)
T ss_pred ccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCcc-
Confidence 346889999999999888732 5679999999999875 44477788999999999999999987
Q ss_pred eeecCCCcCCCCCCChHHHHHHhcCCCCCceeEE-Ec--CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 496 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTK-VF--CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+++.......|+.+.+++||+ ++++ |+ +.+++.+|++++.. ..++|++|++.|-+
T Consensus 190 ----dg~~~~~~~~~~~~r~~a~Gw-----~vi~vvDG~D~~ai~~A~~~a~~-~~~~Pt~I~~~T~~ 247 (663)
T PRK12754 190 ----DGHVEGWFTDDTAMRFEAYGW-----HVIRGIDGHDADSIKRAVEEARA-VTDKPSLLMCKTII 247 (663)
T ss_pred ----CcchhhccCccHHHHHHhcCC-----eEEeeECCCCHHHHHHHHHHHHh-cCCCCEEEEEEeee
Confidence 332222224689999999999 8888 65 78999999988863 35899999999864
No 123
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=98.85 E-value=3.2e-09 Score=108.21 Aligned_cols=117 Identities=24% Similarity=0.292 Sum_probs=87.9
Q ss_pred CcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeee
Q 044559 433 QYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEV 496 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~ 496 (585)
..|++|.|++.|+|.|+|.. +.+|+|++|||.++=. ...+..|.+++|+=+|+|+|+++..+
T Consensus 109 stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~-- 186 (332)
T PF00456_consen 109 STGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQI-- 186 (332)
T ss_dssp --SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEET--
T ss_pred eccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCccc--
Confidence 46899999999999998742 4679999999999985 55688899999987888888877765
Q ss_pred eecCCCcCCCCCCChHHHHHHhcCCCCCceeEEE---cCHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 497 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKV---FCEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 497 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V---~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
++........|+.+-.++||+ +.++| .+.++|.+||+++.. ..++|++|.+.|-.
T Consensus 187 ---dg~~~~~~~~~~~~k~~a~Gw-----~v~~v~dGhd~~~i~~A~~~a~~-~~~kP~~Ii~~Tvk 244 (332)
T PF00456_consen 187 ---DGPTDIVFSEDIAKKFEAFGW-----NVIEVCDGHDVEAIYAAIEEAKA-SKGKPTVIIARTVK 244 (332)
T ss_dssp ---TEEGGGTHHSHHHHHHHHTT------EEEEEEETTBHHHHHHHHHHHHH-STSS-EEEEEEE-T
T ss_pred ---CCCcccccchHHHHHHHHhhh-----hhcccccCcHHHHHHHHHHHHHh-cCCCCceeecceEE
Confidence 332222223578999999999 89998 589999999999974 34899999999864
No 124
>PTZ00089 transketolase; Provisional
Probab=98.85 E-value=1.2e-08 Score=114.03 Aligned_cols=118 Identities=22% Similarity=0.218 Sum_probs=93.8
Q ss_pred CCcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|.+|.+++.|+|.++|.. +..|+|++|||+++=. ...+..|..++||-+|+|+||+++.+.
T Consensus 113 ~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~ 192 (661)
T PTZ00089 113 VTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITID 192 (661)
T ss_pred cCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccc
Confidence 346889999999999888743 5679999999999864 556788889999989999999999872
Q ss_pred eeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEE---c-CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 496 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKV---F-CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V---~-~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
++......-++.+..++||+ +++.| . +.++|.++++++.. ..++|++|++.|-+
T Consensus 193 -----~~~~~~~~~~~~~~f~a~G~-----~~i~v~dG~~D~~~l~~a~~~a~~-~~~~P~~I~~~T~k 250 (661)
T PTZ00089 193 -----GNTDLSFTEDVEKKYEAYGW-----HVIEVDNGNTDFDGLRKAIEEAKK-SKGKPKLIIVKTTI 250 (661)
T ss_pred -----cCcccccCccHHHHHHhcCC-----cEEEeCCCCCCHHHHHHHHHHHHh-cCCCcEEEEEEeee
Confidence 21111124678899999999 89998 2 79999999998874 23799999999854
No 125
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=98.84 E-value=1.5e-08 Score=113.33 Aligned_cols=118 Identities=21% Similarity=0.180 Sum_probs=93.3
Q ss_pred CCcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|++|.+++.|+|.++|.. +.+|+|++|||+++-. ...+..|..++||-+|+|+||++|.+
T Consensus 107 ~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i- 185 (653)
T TIGR00232 107 ATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISI- 185 (653)
T ss_pred eCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeee-
Confidence 346889999999999888632 5679999999999885 44577788999999999999999988
Q ss_pred eeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEE-c--CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 496 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKV-F--CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V-~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+++.......++.+.+++||+ ++++| + +.+++.+|++++.. ..++|++|++.|-+
T Consensus 186 ----~~~~~~~~~~~~~~~~~a~Gw-----~~~~v~DG~D~~ai~~A~~~a~~-~~~~P~~I~~~T~~ 243 (653)
T TIGR00232 186 ----DGAVDGSFTEDVAKRFEAYGW-----EVLEVEDGHDLAAIDAAIEEAKA-SKDKPTLIEVTTTI 243 (653)
T ss_pred ----ccccccccCccHHHHHHhcCC-----cEEEeCCCCCHHHHHHHHHHHHh-CCCCCEEEEEEeee
Confidence 222112224689999999999 89998 4 68899999998874 22589999999853
No 126
>PRK12753 transketolase; Reviewed
Probab=98.83 E-value=1.3e-08 Score=113.59 Aligned_cols=117 Identities=20% Similarity=0.177 Sum_probs=93.5
Q ss_pred CcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeee
Q 044559 433 QYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEV 496 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~ 496 (585)
..|.+|.+++.|+|.++|.. +.+|+|++|||+++=. ...+..|.+++||-+|+|+||+++.+
T Consensus 112 ~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i-- 189 (663)
T PRK12753 112 TTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISI-- 189 (663)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcC--
Confidence 56889999999999888742 4689999999999874 44577888999998899999999987
Q ss_pred eecCCCcCCCCCCChHHHHHHhcCCCCCceeEE-Ec--CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 497 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTK-VF--CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 497 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
++.......-|+.+.+++||+ +++. |+ +.++|.++++++.. ..++|++|++.|-+
T Consensus 190 ---~~~~~~~~~~~~~~~f~a~Gw-----~~~~~vDGhD~~~i~~a~~~a~~-~~~~P~~I~~~T~k 247 (663)
T PRK12753 190 ---DGETEGWFTDDTAKRFEAYHW-----HVIHEIDGHDPQAIKEAILEAQS-VKDKPSLIICRTII 247 (663)
T ss_pred ---CCChhhhcChhHHHHHHHcCC-----eEEceeCCCCHHHHHHHHHHHHH-CCCCeEEEEEEEee
Confidence 222222224688999999999 8884 75 78999999998874 35799999999864
No 127
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=98.80 E-value=2.1e-08 Score=91.40 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCEEEcCCcccc-cchHHHHHHHHHHhCCceEeCCC------CccccCCCCCCccccc
Q 044559 243 EAAAEFLNKAVKPVLVAGPKMRV-AKACNAFVELADACGYAVAVMPS------AKGLVPEHHPHFIGTY 304 (585)
Q Consensus 243 ~~~~~~L~~a~rpvIi~G~g~~~-~~a~~~l~~lae~~~~Pv~tt~~------gkg~~~~~hp~~~g~~ 304 (585)
++++++|.+||||+|++|.|+.+ .++.+++.+|+|++++||++|++ +||++++ |.++|..
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~l 91 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHEL 91 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHH
Confidence 57889999999999999999987 78899999999999999999999 8999998 8887765
No 128
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.80 E-value=1.5e-07 Score=98.32 Aligned_cols=156 Identities=13% Similarity=0.052 Sum_probs=120.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-----CCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCCh
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-----PGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTV 116 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~-----~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGp 116 (585)
.-++|.++++......|++.++++|+++.+++.+.|.+. -++.++.+-+|.+|..||.|-+.+..| ++..||||
T Consensus 4 ~~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR-a~TaTSg~ 82 (390)
T PRK08366 4 KVVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR-AFTATSAQ 82 (390)
T ss_pred EEeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC-eEeeeCcc
Confidence 348999999999999999999999999999999988653 247888888999999999996665444 56678999
Q ss_pred hhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhh-cceeE-EEEEeCChhhHHHHHHHHHH
Q 044559 117 GGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF-QTVTC-YQAVVNNLEDAHELIDTAVS 194 (585)
Q Consensus 117 G~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~-~~~tk-~~~~v~~~~~~~~~l~~A~~ 194 (585)
|++=+.-+|.-|...++|+++.-.+++...-. .. ..+|.+++ ..-+. ......+++++.++..+||+
T Consensus 83 Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~~~-------~~----~~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~ 151 (390)
T PRK08366 83 GLALMHEMLHWAAGARLPIVMVDVNRAMAPPW-------SV----WDDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFK 151 (390)
T ss_pred cHHHHhhHHHHHHhcCCCEEEEEeccCCCCCC-------CC----cchhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHH
Confidence 99999999999999999999888877655211 11 11232211 11112 22333688999999999999
Q ss_pred HhhhcCCcEEEEecC
Q 044559 195 TALKESKPVYISVAC 209 (585)
Q Consensus 195 ~a~~~~GPV~i~iP~ 209 (585)
+|..-+-||.+..-.
T Consensus 152 lAE~~~~PViv~~Dg 166 (390)
T PRK08366 152 VAETVNLPAMVVESA 166 (390)
T ss_pred HHHHHCCCEEEEecC
Confidence 999778999998854
No 129
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.79 E-value=3.1e-08 Score=109.32 Aligned_cols=122 Identities=21% Similarity=0.197 Sum_probs=89.1
Q ss_pred CcccccchhHHHHhhhhcC----CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCC--c-
Q 044559 433 QYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGP--Y- 503 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~----p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~--~- 503 (585)
+.|..|.++|.|+|.++|. .++.|+|++|||++... ...|..|..+++|+++||-|| +|.+.... ++. +
T Consensus 111 ~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN-~~si~~~~-~~~~~~l 188 (581)
T PRK12315 111 TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDN-QMSIAENH-GGLYKNL 188 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECC-CCcCCCCC-chhhhhh
Confidence 4566677888888887763 35789999999999873 556888889998876655555 47762111 110 0
Q ss_pred ---CCCCCCChHHHHHHhcCCCCCceeEEE-c--CHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCC
Q 044559 504 ---NVIKNWNYTGLVDAIHNGEGKCWTTKV-F--CEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 504 ---~~~~~~d~~~la~a~G~~~~~~~~~~V-~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
......+...++++||+ ++++| + +.+++.++++++.+ .++|+||++.|-+..-
T Consensus 189 ~~~~~~~~~~~~~~~~a~G~-----~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G 247 (581)
T PRK12315 189 KELRDTNGQSENNLFKAMGL-----DYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKG 247 (581)
T ss_pred hhhhhcccccHHHHHHhcCC-----eEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCC
Confidence 11123567789999999 89888 4 78999999999875 7899999999987543
No 130
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.78 E-value=2.1e-07 Score=97.46 Aligned_cols=158 Identities=16% Similarity=0.078 Sum_probs=119.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-----CCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChh
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-----PGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVG 117 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~-----~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG 117 (585)
-++|.+++++...+.|++.++++|+++.+++.+.+.+. -+.+++.+-+|.+|..||.|-+.+ |.=++..|||||
T Consensus 6 ~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~a-GaRa~TaTS~~G 84 (394)
T PRK08367 6 VMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAA-GVRTFTATASQG 84 (394)
T ss_pred eccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhh-CCCeEeeeccch
Confidence 48999999999999999999999999999999988652 257888888999999999996655 544666799999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhh
Q 044559 118 GLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTAL 197 (585)
Q Consensus 118 ~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~ 197 (585)
++=+.-.|.-|...++|+++..+.+.... .-+ +|..++ +. ...+-..-+. ....+++++.++...||++|.
T Consensus 85 l~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~--i~~d~~--D~-~~~rd~g~~~---~~a~~~QEa~D~~~~Af~lAE 155 (394)
T PRK08367 85 LALMHEVLFIAAGMRLPIVMAIGNRALSA-PIN--IWNDWQ--DT-ISQRDTGWMQ---FYAENNQEALDLILIAFKVAE 155 (394)
T ss_pred HHHHhhHHHHHHHccCCEEEEECCCCCCC-CCC--cCcchH--HH-HhccccCeEE---EeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887765542 101 110000 11 1111111222 233688999999999999999
Q ss_pred hcC--CcEEEEecCC
Q 044559 198 KES--KPVYISVACN 210 (585)
Q Consensus 198 ~~~--GPV~i~iP~d 210 (585)
..+ -||.+..-.-
T Consensus 156 ~~~~~~Pviv~~Dgf 170 (394)
T PRK08367 156 DERVLLPAMVGFDAF 170 (394)
T ss_pred HhCcCCCEEEEechh
Confidence 754 7999988764
No 131
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.77 E-value=1.9e-07 Score=98.56 Aligned_cols=162 Identities=14% Similarity=0.038 Sum_probs=125.4
Q ss_pred ccCCCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-----CCCeEEeCcchHHHHHHHhHHhHhcCccEEEE
Q 044559 38 LVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-----PGLNLIGCCNELNAGYAADGYARSRGVGACVV 112 (585)
Q Consensus 38 ~~~~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~-----~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~ 112 (585)
+-...-++|.++++....+.|++.++|+|+++.+++.+.+.+. -+..+|.+-+|.+|..||.|-+. +|.=++..
T Consensus 7 ~~~~~~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~-aGaRa~Ta 85 (407)
T PRK09622 7 LQEIEVWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAA-AGGRVATA 85 (407)
T ss_pred cceeeecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHh-hCcCEEee
Confidence 3445568999999999999999999999999999999988642 13578999999999999999554 45546777
Q ss_pred eCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhh--cceeEEEEEeCChhhHHHHHH
Q 044559 113 TFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF--QTVTCYQAVVNNLEDAHELID 190 (585)
Q Consensus 113 tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~--~~~tk~~~~v~~~~~~~~~l~ 190 (585)
|||||++=+.-+|.-|...++|++++..++..... + .. ..||.+++ +.-........+++++.++..
T Consensus 86 TS~~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~~----~---~i----~~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~ 154 (407)
T PRK09622 86 TSSQGLALMVEVLYQASGMRLPIVLNLVNRALAAP----L---NV----NGDHSDMYLSRDSGWISLCTCNPQEAYDFTL 154 (407)
T ss_pred cCcchHHHHhhHHHHHHHhhCCEEEEEeccccCCC----c---CC----CchHHHHHHHhcCCeEEEeCCCHHHHHHHHH
Confidence 99999999999999999999998888888765311 0 11 11222222 211233455578999999999
Q ss_pred HHHHHhhhc--CCcEEEEecCCC
Q 044559 191 TAVSTALKE--SKPVYISVACNL 211 (585)
Q Consensus 191 ~A~~~a~~~--~GPV~i~iP~dv 211 (585)
+||++|... +-||.+..-.-+
T Consensus 155 ~Af~lAE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 155 MAFKIAEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred HHHHHHHHhccCCCEEEEechhh
Confidence 999999886 789999988764
No 132
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.72 E-value=1.3e-07 Score=91.55 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=105.1
Q ss_pred HHHHcCCCEEEecCCCChHHHHHhhhc---CCCC--eEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHHHHH
Q 044559 53 RLVQIGATDVFSVPGDFNLTLLDHLIA---EPGL--NLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 127 (585)
Q Consensus 53 ~L~~~GV~~vFg~PG~~~~~l~~al~~---~~~i--~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l~~ 127 (585)
...+.|++.++++|+++..++++.+.+ ..++ +++.+-+|.+|..||.|.+.+ |.=++..|||||+.-+.-+|..
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~a-G~ra~t~ts~~Gl~lm~e~l~~ 80 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASAA-GARAMTATSGPGLNLMAEPLYW 80 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHHT-T--EEEEEECCHHHHHCCCHHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHhc-CCceEEeecCCcccccHhHHHH
Confidence 467899999999999999999998754 2344 999999999999999996665 5534467899999988899999
Q ss_pred hhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEe
Q 044559 128 AYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISV 207 (585)
Q Consensus 128 A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~i 207 (585)
|...++|++++..++.....+-. .+..| .| .-..+..-.-.....+++++.++...||++|..-+-||.+..
T Consensus 81 a~~~~~P~V~~~~~R~g~~~g~~------~~~~q-~D-~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~ 152 (230)
T PF01855_consen 81 AAGTELPIVIVVVQRAGPSPGLS------TQPEQ-DD-LMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLF 152 (230)
T ss_dssp HHHTT--EEEEEEEB---SSSB--------SB-S-HH-HHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHcCCCEEEEEEECCCCCCCCc------CcCCh-hH-HHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 99999999999988776533211 11111 12 222223333345557899999999999999999899999999
Q ss_pred cCCCC
Q 044559 208 ACNLP 212 (585)
Q Consensus 208 P~dv~ 212 (585)
..-+.
T Consensus 153 Dg~~~ 157 (230)
T PF01855_consen 153 DGFLC 157 (230)
T ss_dssp ECCCC
T ss_pred chhhh
Confidence 87775
No 133
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=98.71 E-value=1.9e-07 Score=86.88 Aligned_cols=113 Identities=22% Similarity=0.227 Sum_probs=85.1
Q ss_pred cccchhHHHHhhhhcCCCCcEEEEEccchhcc--cHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCC-CCCChH
Q 044559 436 SIGWSVGATLGYAQSVPEKRVIACIGDGSFQV--TAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVI-KNWNYT 512 (585)
Q Consensus 436 ~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~-~~~d~~ 512 (585)
+++.++++|+|+++...+.+|.+++|||-..- ++..+.+|++|+|+=+|.+++-+.... +|...++ +.-++.
T Consensus 124 GLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~Ql-----dG~t~~i~~~~pL~ 198 (243)
T COG3959 124 GLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQL-----DGETEEIMPKEPLA 198 (243)
T ss_pred cchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCccc-----CCchhhccCcchhH
Confidence 44455556666666667789999999999876 366789999999976776666654432 5544443 556899
Q ss_pred HHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcCCCCCCeEEEEEEcC
Q 044559 513 GLVDAIHNGEGKCWTTKVF--CEEELIEAIENATGPKKDCLCFIEVLVH 559 (585)
Q Consensus 513 ~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~ 559 (585)
+-.++||+ +..+|+ +.+++.++|+++.. ..++|.+|-..+-
T Consensus 199 ~k~eAFGw-----~V~evdG~d~~~i~~a~~~~~~-~~~rP~~IIa~Tv 241 (243)
T COG3959 199 DKWEAFGW-----EVIEVDGHDIEEIVEALEKAKG-SKGRPTVIIAKTV 241 (243)
T ss_pred HHHHhcCc-----eEEEEcCcCHHHHHHHHHhhhc-cCCCCeEEEEecc
Confidence 99999999 899997 68999999998874 2349999977654
No 134
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=98.69 E-value=3.3e-08 Score=100.17 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=79.0
Q ss_pred cccccchhHHHHhhhhcC----CCCcEEEEEccchhccc-HHH-HHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCC
Q 044559 434 YGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVT-AQD-VSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIK 507 (585)
Q Consensus 434 ~g~mG~~lpaAiGaalA~----p~r~vv~v~GDGsf~~~-~~e-L~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~ 507 (585)
.+.+|..+|.|.|.++|. .+.-++|++|||+..-. ..| |..|..+++|+++||-||+ |++...... ...
T Consensus 100 ~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~-~aist~~~~----~~~ 174 (300)
T PF00676_consen 100 SSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQ-YAISTPTEE----QTA 174 (300)
T ss_dssp ESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEES-EETTEEHHH----HCS
T ss_pred cccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCC-cccccCccc----ccc
Confidence 355666677777777663 35678999999996553 333 6677789999977776665 776211110 112
Q ss_pred CCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 508 NWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 508 ~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
..++...|++||+ .+++|+ |+.++-++.++|++ .+.+||+|||+.+-+
T Consensus 175 ~~~~~~~a~~~gi-----p~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR 226 (300)
T PF00676_consen 175 SPDIADRAKGYGI-----PGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYR 226 (300)
T ss_dssp SSTSGGGGGGTTS-----EEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--
T ss_pred ccchhhhhhccCC-----cEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeecc
Confidence 3567888999999 999996 67777666666655 347899999999954
No 135
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=98.68 E-value=1.1e-07 Score=97.24 Aligned_cols=117 Identities=20% Similarity=0.171 Sum_probs=90.9
Q ss_pred CcccccchhHHHHhhhhcC-----------CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeec
Q 044559 433 QYGSIGWSVGATLGYAQSV-----------PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIH 499 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~-----------p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~ 499 (585)
..|++|.|++.|+|.++|. .+.+|+||+|||.++=. ...+..|.+++|+=+|+|+|++...+
T Consensus 116 sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qi----- 190 (386)
T cd02017 116 PTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRL----- 190 (386)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCcc-----
Confidence 4578888888888887753 25789999999999874 45578888999977888888887765
Q ss_pred CCCcCC--CCCCChHHHHHHhcCCCCCceeEEEc----------------------------------------------
Q 044559 500 DGPYNV--IKNWNYTGLVDAIHNGEGKCWTTKVF---------------------------------------------- 531 (585)
Q Consensus 500 ~~~~~~--~~~~d~~~la~a~G~~~~~~~~~~V~---------------------------------------------- 531 (585)
++...+ ...-|+.+..++||+ +.+.|+
T Consensus 191 dG~t~~v~~~~e~l~~kf~AfGW-----~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~ 265 (386)
T cd02017 191 DGPVRGNGKIIQELEGIFRGAGW-----NVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFG 265 (386)
T ss_pred CCcccccccCchhHHHHHHhcCC-----EEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhcc
Confidence 333333 234689999999999 888884
Q ss_pred -------------------------CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 532 -------------------------CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 532 -------------------------~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+.++|.+|++++.. ..++|++|-+.|-.
T Consensus 266 ~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~-~~~kPt~Iia~Tik 318 (386)
T cd02017 266 KYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE-HKGKPTVILAKTIK 318 (386)
T ss_pred ccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHh-CCCCCeEEEEeCee
Confidence 78899999988763 35789999999865
No 136
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=98.65 E-value=4.2e-08 Score=88.83 Aligned_cols=60 Identities=15% Similarity=0.287 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCC------ccccCCCCCCccccc
Q 044559 243 EAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSA------KGLVPEHHPHFIGTY 304 (585)
Q Consensus 243 ~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g------kg~~~~~hp~~~g~~ 304 (585)
++++++|.+||||+|++|.|+.++++.+++++|+|++++||++|+.+ ||++ +||.++|..
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~ 83 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEI 83 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHH
Confidence 57889999999999999999998899999999999999999999998 8998 677777654
No 137
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=98.61 E-value=2e-07 Score=94.42 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=80.8
Q ss_pred CCcccccchhHHHHhhhhcCC-----CCcEEEEEccchhccc-HH-HHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 432 MQYGSIGWSVGATLGYAQSVP-----EKRVIACIGDGSFQVT-AQ-DVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p-----~r~vv~v~GDGsf~~~-~~-eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
++.+.+|..+|-|.|+++|.. ++-+++++|||+-.-. .. .|.-|.-+++|++++| +|++|+|.. +.. .
T Consensus 133 ~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~i-eNN~yAiSv---p~~-~ 207 (358)
T COG1071 133 GGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVI-ENNQYAISV---PRS-R 207 (358)
T ss_pred CCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEE-ecCCceeec---chh-h
Confidence 345788899999999988732 3368999999998764 33 3556667999976655 555698841 000 0
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
......+..=|.+||+ .+++|+ |.-.+-++.++|.+ ...+||+|||+.+-|
T Consensus 208 q~~~~~~~~ra~aygi-----pgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR 262 (358)
T COG1071 208 QTAAEIIAARAAAYGI-----PGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYR 262 (358)
T ss_pred cccchhHHhhhhccCC-----CeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Confidence 1122345657889999 999997 45555555555544 237799999999865
No 138
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=98.59 E-value=3.4e-07 Score=88.23 Aligned_cols=160 Identities=21% Similarity=0.315 Sum_probs=88.8
Q ss_pred HHHHHHHHhhCC-CCCEEEecCCccccccc-------c---ccc-------cCC-CeeeecCCcccccchhHHHHhhhhc
Q 044559 390 NVLFQHIQKMLS-SETAVIAETGDSWFNCQ-------K---LKL-------PKG-CGYEFQMQYGSIGWSVGATLGYAQS 450 (585)
Q Consensus 390 ~~~~~~l~~~l~-~~~iiv~d~G~~~~~~~-------~---~~~-------~~~-~~~~~~~~~g~mG~~lpaAiGaalA 450 (585)
-++--+|..++. +.+-++.|+|--.+... . ++. |++ -+-+...+.|--|.++++|+|.+.|
T Consensus 47 VELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~a 126 (270)
T PF13292_consen 47 VELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVA 126 (270)
T ss_dssp HHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEecccccchhhhccCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHH
Confidence 345556666663 45667889995332110 1 111 111 1123334556677788899998887
Q ss_pred C----CCCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceeeee----------ec-CCCcCCC-------
Q 044559 451 V----PEKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIEVE----------IH-DGPYNVI------- 506 (585)
Q Consensus 451 ~----p~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~----------~~-~~~~~~~------- 506 (585)
+ .++.||+|+|||++. |....|..+...+-+++| |+||+...|... +. ...|..+
T Consensus 127 r~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liV-ILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~ 205 (270)
T PF13292_consen 127 RDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIV-ILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSL 205 (270)
T ss_dssp HHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEE-EEEE-SBSSSB--SSHCCC--------------------
T ss_pred HHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEE-EEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHH
Confidence 5 478999999999985 557788888888888655 555555554110 00 1111110
Q ss_pred ------------------CCCChHHHHHHhcCCCCCceeEEE---cCHHHHHHHHHhhcCCCCCCeEEEEEEc
Q 044559 507 ------------------KNWNYTGLVDAIHNGEGKCWTTKV---FCEEELIEAIENATGPKKDCLCFIEVLV 558 (585)
Q Consensus 507 ------------------~~~d~~~la~a~G~~~~~~~~~~V---~~~~eL~~aL~~a~~~~~~gp~vIeV~v 558 (585)
... +..+.|.+|+ .|+-+ .+.++|.++|+++.+ .++|+||.|.|
T Consensus 206 l~~~~~~~~~~~r~~~s~K~~-~~~lFe~LG~-----~Y~GPiDGHdl~~Li~~l~~~K~--~~gPvllHV~T 270 (270)
T PF13292_consen 206 LKKIPPIEEFAKRIKESLKGF-SPNLFEELGF-----DYIGPIDGHDLEELIEVLENAKD--IDGPVLLHVIT 270 (270)
T ss_dssp ------------------------CCCHHCT------EEEEEEETT-HHHHHHHHHHHCC--SSSEEEEEEE-
T ss_pred HHhhhHHHHHHHHHhhhhhhh-hHHHHHHcCC-----eEEeccCCCCHHHHHHHHHHHhc--CCCCEEEEEeC
Confidence 011 1245677788 77765 479999999999986 89999999975
No 139
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=98.57 E-value=2.2e-07 Score=96.00 Aligned_cols=116 Identities=18% Similarity=0.033 Sum_probs=80.1
Q ss_pred CCcccccchhHHHHhhhhcC----CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCC
Q 044559 432 MQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~----p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
+..+.+|.++|.|+|+++|. .++.+++++|||+..-. ...|..|..+++|+++||-||+ |++.... .. .
T Consensus 135 ~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~-~aist~~-~~---~ 209 (362)
T PLN02269 135 GGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH-YGMGTAE-WR---A 209 (362)
T ss_pred ccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCC-EeccCch-hh---h
Confidence 34577888888888887774 35679999999996654 3345666778999777777766 8872110 00 0
Q ss_pred CCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 506 IKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
....+|.+ +++++ .+++|+ ++.++..+++++.+ .+ ++|+|||+.+-+
T Consensus 210 ~~~~~~~~--~~~~~-----p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR 260 (362)
T PLN02269 210 AKSPAYYK--RGDYV-----PGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYR 260 (362)
T ss_pred ccchHHHH--hhcCC-----CeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCc
Confidence 11233443 45666 788886 77888888887765 24 899999998865
No 140
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=3.5e-07 Score=97.48 Aligned_cols=116 Identities=20% Similarity=0.210 Sum_probs=94.7
Q ss_pred CcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhccc-HHH-HHHHHHhCCceEEEEEeCCcceeee
Q 044559 433 QYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQVT-AQD-VSTMLRCGQKTIIFLINNGGYTIEV 496 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~~~-~~e-L~ta~~~~lpv~ivV~NN~~~~~~~ 496 (585)
..|.+|-|++.|+|.++|.. |..+.|++|||+++=. .+| ..-|-+++|.=+|++.+++...|
T Consensus 114 TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~Isi-- 191 (663)
T COG0021 114 TTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISI-- 191 (663)
T ss_pred ccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCcee--
Confidence 35899999999999998732 4689999999999986 344 46667899999999999998887
Q ss_pred eecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc---CHHHHHHHHHhhcCCCCCCeEEEEEEcC
Q 044559 497 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF---CEEELIEAIENATGPKKDCLCFIEVLVH 559 (585)
Q Consensus 497 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~---~~~eL~~aL~~a~~~~~~gp~vIeV~v~ 559 (585)
+|.......-|..+=.+++|+ +++++. +.+++.+|+++|.. ..++|++|+|+|-
T Consensus 192 ---DG~~~~~f~ed~~~RfeAyGW-----~vi~~~DG~D~e~I~~Ai~~Ak~-~~dkPtlI~~kTi 248 (663)
T COG0021 192 ---DGDTSLSFTEDVAKRFEAYGW-----NVIRVIDGHDLEAIDKAIEEAKA-STDKPTLIIVKTI 248 (663)
T ss_pred ---ccCcccccchhHHHHHHhcCC-----eEEEecCCCCHHHHHHHHHHHHh-cCCCCeEEEEEee
Confidence 443333345788999999999 888765 49999999999984 5679999999985
No 141
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=98.50 E-value=6e-07 Score=99.89 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=87.1
Q ss_pred CcccccchhHHHHhhhhcC----CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeec-------
Q 044559 433 QYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIH------- 499 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~----p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~------- 499 (585)
..|..|.+++.|+|.++|. .+..|++++|||++.-. ...+..|..+++|+ ++|+||++|.+.....
T Consensus 109 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i~~~~~~~~~~l~ 187 (617)
T TIGR00204 109 SAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSISENVGALSNHLA 187 (617)
T ss_pred CCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCE-EEEEECCCcccCCCchHHHHHHH
Confidence 4566777888888887764 56789999999999864 55688888999998 8888888888721100
Q ss_pred ----CCCcC-------C----CCC-CC-h-H-------------HHHHHhcCCCCCceeE-EEc--CHHHHHHHHHhhcC
Q 044559 500 ----DGPYN-------V----IKN-WN-Y-T-------------GLVDAIHNGEGKCWTT-KVF--CEEELIEAIENATG 545 (585)
Q Consensus 500 ----~~~~~-------~----~~~-~d-~-~-------------~la~a~G~~~~~~~~~-~V~--~~~eL~~aL~~a~~ 545 (585)
...|. + .++ .+ + . .+.++||+ .++ .|+ +.++|.++|+++..
T Consensus 188 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~-----~~~~~vDGhd~~~l~~al~~ak~ 262 (617)
T TIGR00204 188 QLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGF-----NYIGPVDGHDLLELIETLKNAKK 262 (617)
T ss_pred HhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCC-----cEEcccCCCCHHHHHHHHHHHhc
Confidence 00111 0 011 01 1 1 13788999 677 564 89999999998875
Q ss_pred CCCCCeEEEEEEcCCCCC
Q 044559 546 PKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 546 ~~~~gp~vIeV~v~~~~~ 563 (585)
.++|++|.+.|.+..-
T Consensus 263 --~~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 263 --LKGPVFLHIQTKKGKG 278 (617)
T ss_pred --CCCCEEEEEEecCCCC
Confidence 6789999999987443
No 142
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.49 E-value=8.7e-07 Score=97.55 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=85.7
Q ss_pred CCcccccchhHHHHhhhhcC----CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeee-eecCCCcC
Q 044559 432 MQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEV-EIHDGPYN 504 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~----p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~-~~~~~~~~ 504 (585)
.+.|++|.+|++|+|.++|. .+.+|++++|||.+.-. ...+..|.+++-|+++ |+|+++..+.. .+.++.-.
T Consensus 174 ~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nliv-IlddN~~~~~~~~q~~g~~~ 252 (641)
T PLN02234 174 FGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIV-ILNDNKQVSLPTANLDGPTQ 252 (641)
T ss_pred ECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEE-EEECCCCCcccccccCCCCC
Confidence 45688999999999988775 35689999999999764 5667777866756555 55555552100 00011100
Q ss_pred C----------C------CCCChHHHHHHhcCCCCCceeE-EEc--CHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCC
Q 044559 505 V----------I------KNWNYTGLVDAIHNGEGKCWTT-KVF--CEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 505 ~----------~------~~~d~~~la~a~G~~~~~~~~~-~V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
+ + ..-+.....++||+ .++ .|+ +.++|.++|+++...+.++|++|.+.|-+..-
T Consensus 253 ~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~-----~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkG 325 (641)
T PLN02234 253 PVGALSCALSRLQSNCGMIRETSSTLFEELGF-----HYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRG 325 (641)
T ss_pred CcccHHHHHHHhhcccccccCCHHHHHHHcCC-----EEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCC
Confidence 0 0 00256788999999 888 775 89999999998764223589999999987553
No 143
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=98.46 E-value=3.8e-07 Score=89.42 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=81.8
Q ss_pred CcccccchhHHHHhhhhcCC---------CCcEEEEEccchhc-c-cHHHH-HHHHHhCCc---eEEEEEeCCcceeeee
Q 044559 433 QYGSIGWSVGATLGYAQSVP---------EKRVIACIGDGSFQ-V-TAQDV-STMLRCGQK---TIIFLINNGGYTIEVE 497 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~p---------~r~vv~v~GDGsf~-~-~~~eL-~ta~~~~lp---v~ivV~NN~~~~~~~~ 497 (585)
.-+-+|..+|-|.|+++|.. +.-+|++.|||+|. - ...|- .-+.-.++| +++||.| ++|++...
T Consensus 111 npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveN-Nq~g~sT~ 189 (265)
T cd02016 111 NPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVN-NQIGFTTD 189 (265)
T ss_pred CCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEe-CCEEEEec
Confidence 34668888888888887742 34568899999973 3 35553 334446787 6666655 55877311
Q ss_pred ecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 498 IHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 498 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
... .....+..+.|++||+ .+++|+ |++++.++.++|++ .+.++|+|||+.+-|
T Consensus 190 ~~~----~~~~~~~~~~a~~~gi-----p~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR 247 (265)
T cd02016 190 PRD----SRSSPYCTDVAKMIGA-----PIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYR 247 (265)
T ss_pred HHH----hcccccHHHHHeecCC-----CEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEec
Confidence 100 1124567889999999 899986 78888877777766 457899999999976
No 144
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.45 E-value=7.2e-06 Score=83.43 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=79.4
Q ss_pred CcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeec-C----C------Cc-CCCCCCChHHHHHHhcC
Q 044559 454 KRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH-D----G------PY-NVIKNWNYTGLVDAIHN 520 (585)
Q Consensus 454 r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-~----~------~~-~~~~~~d~~~la~a~G~ 520 (585)
..|+++.||| ++-...+.|..+.+.+.+|++||+||..|++.-.+. . | ++ ......|...++.++|.
T Consensus 152 ~~v~v~gGDG~~ydIG~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~g~ 231 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSYGN 231 (365)
T ss_pred cceEEEecchhhhccchhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHcCC
Confidence 5899999999 667889999999999999999999999999831111 0 1 11 12356899999999998
Q ss_pred CCCCceeE-E--E-cCHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 521 GEGKCWTT-K--V-FCEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 521 ~~~~~~~~-~--V-~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
.|+ + + .++.++.+++++|++ .+||.+|+|...-
T Consensus 232 -----~YVA~~s~~~~~~~~~~~i~eA~~--~~Gps~I~v~sPC 268 (365)
T cd03377 232 -----VYVAQIALGANDNQTLKAFREAEA--YDGPSLIIAYSPC 268 (365)
T ss_pred -----CEEEEEecccCHHHHHHHHHHHhc--CCCCEEEEEEccC
Confidence 333 3 3 378999999999997 8999999999864
No 145
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=98.40 E-value=1.5e-06 Score=83.14 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=72.4
Q ss_pred CcccccchhHHHHhhhhcCCCCcEEEEEccchhccc-HHHHHHHH----HhCCceEEEEEeCCcceeeeeecCCCc--CC
Q 044559 433 QYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQDVSTML----RCGQKTIIFLINNGGYTIEVEIHDGPY--NV 505 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~eL~ta~----~~~lpv~ivV~NN~~~~~~~~~~~~~~--~~ 505 (585)
..|.+|++++.|+|+++.+++..|+|++|||.+.-. +...|.+. .+++.-++.|++|++|.| .++. ..
T Consensus 60 ~~G~LG~gLs~A~G~a~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i-----~~pt~~~~ 134 (227)
T cd02011 60 EGGELGYSLSHAYGAVFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKI-----SNPTILAR 134 (227)
T ss_pred cccchhhHHHHHHHhhhcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcc-----cCCccccc
Confidence 368899999999999999999999999999996543 23334432 356766677778888987 2211 11
Q ss_pred CCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhh
Q 044559 506 IKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENA 543 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a 543 (585)
...-++.+.+++||+ +.+.|+ +++++.+++.++
T Consensus 135 ~~~e~l~~~~~~yG~-----~~~~VDG~D~~av~~~~a~a 169 (227)
T cd02011 135 ISHEELEALFRGYGY-----EPYFVEGDDPETMHQAMAAT 169 (227)
T ss_pred cCchhHHHHHHhCCC-----ceEEECCCCHHHHHHHHHHH
Confidence 235689999999999 788886 555554444443
No 146
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=98.36 E-value=2e-06 Score=97.15 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=93.0
Q ss_pred CCcccccchhHHHHhhhhcCC-----------CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP-----------EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEI 498 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p-----------~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
...|+||.|++.|+|.+++.. +++|+|++|||-++=. ...+..|.+++|+=+|+|+|++...+
T Consensus 186 ~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~ql---- 261 (889)
T TIGR03186 186 FPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRL---- 261 (889)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCcc----
Confidence 346899999999999988522 5789999999999874 55688889999988888888887765
Q ss_pred cCCCcCCC-C-CCChHHHHHHhcCCCCCceeEEEc---------------------------------------------
Q 044559 499 HDGPYNVI-K-NWNYTGLVDAIHNGEGKCWTTKVF--------------------------------------------- 531 (585)
Q Consensus 499 ~~~~~~~~-~-~~d~~~la~a~G~~~~~~~~~~V~--------------------------------------------- 531 (585)
+++-... . .-++.+..++||+ +.++|.
T Consensus 262 -DG~t~~~~~~~e~l~~kf~a~GW-----~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff 335 (889)
T TIGR03186 262 -DGPVRGNGRIIDELESQFAGAGW-----NVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFF 335 (889)
T ss_pred -CCccccccccchHHHHHHHhCCC-----EEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhc
Confidence 4433221 1 2579999999999 888872
Q ss_pred --------------------------CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 532 --------------------------CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 532 --------------------------~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+++.+.+|+++|.+ ..++|+||.++|-.
T Consensus 336 ~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~-~~~~PTvIla~Tvk 389 (889)
T TIGR03186 336 GQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVR-HEGRPTVILAKTMK 389 (889)
T ss_pred CccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh-CCCCCEEEEEEeee
Confidence 78899999988874 34799999999754
No 147
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=98.33 E-value=1.5e-05 Score=82.87 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=125.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE---PGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 119 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~ 119 (585)
.++|.++++......|++.+.++|=+...++++.+.+. -+..++.+-+|.+|..|+.| |-.+|.-+...|||||++
T Consensus 5 ~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~G-A~~aGar~~TaTSg~Gl~ 83 (365)
T COG0674 5 VMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIG-ASYAGARAFTATSGQGLL 83 (365)
T ss_pred eccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHH-HHhhCcceEeecCCccHH
Confidence 47899999999999999999999999999999987542 36899999999999999999 555566566779999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhc----ceeEEEEEeCChhhHHHHHHHHHHH
Q 044559 120 SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQ----TVTCYQAVVNNLEDAHELIDTAVST 195 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~----~~tk~~~~v~~~~~~~~~l~~A~~~ 195 (585)
-+..++.-|....+|+++...+++....+.- . ..+|.+++. .+...... +.+++.+...+||+.
T Consensus 84 Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p-----~-----~~dq~D~~~~r~~g~~~~~~~--s~qEa~d~t~~Af~i 151 (365)
T COG0674 84 LMAEALGLAAGTETPLVIVVAQRPLPSTGLP-----I-----KGDQSDLMAARDTGFPILVSA--SVQEAFDLTLLAFNI 151 (365)
T ss_pred HHHHHHHHHHhccCCeEEEEeccCcCCCccc-----c-----cccHHHHHHHHccCceEEeec--cHHHHHHHHHHHHHH
Confidence 9999999999999999999999887643321 1 112322221 33333332 789999999999999
Q ss_pred hhhcCCcEEEEecCCCCC
Q 044559 196 ALKESKPVYISVACNLPA 213 (585)
Q Consensus 196 a~~~~GPV~i~iP~dv~~ 213 (585)
|...+-||.+.+-.-+.+
T Consensus 152 Ae~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 152 AEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred HHHhcCCEEEeeccchhc
Confidence 998888998886655443
No 148
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=98.23 E-value=6.5e-06 Score=91.97 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=69.3
Q ss_pred CCcccccchhHHHHhhhhcC-----------CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeee
Q 044559 432 MQYGSIGWSVGATLGYAQSV-----------PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEI 498 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~-----------p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
...|+||.|++.|+|.+++. .+++|+||+|||-+.=. ...+..|.+++|+=+|+|+|++...+
T Consensus 186 ~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~ql---- 261 (885)
T TIGR00759 186 FPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRL---- 261 (885)
T ss_pred eCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCcc----
Confidence 34688999999999988753 35789999999999874 55678889999988888888887765
Q ss_pred cCCCcCCCC--CCChHHHHHHhcCCCCCceeEEE
Q 044559 499 HDGPYNVIK--NWNYTGLVDAIHNGEGKCWTTKV 530 (585)
Q Consensus 499 ~~~~~~~~~--~~d~~~la~a~G~~~~~~~~~~V 530 (585)
+++..... .-++.+..++||+ ..++|
T Consensus 262 -DG~v~~~~~i~e~le~~F~a~GW-----~Vi~V 289 (885)
T TIGR00759 262 -DGPVRGNGKIIQELESLFRGAGW-----NVIKV 289 (885)
T ss_pred -CCccccccccchhHHHHHHhcCC-----EEEEE
Confidence 44332221 2478999999999 88888
No 149
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.19 E-value=9.4e-06 Score=90.34 Aligned_cols=126 Identities=18% Similarity=0.247 Sum_probs=84.2
Q ss_pred CCcccccchhHHHHhhhhcC----CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcc--------eeeee
Q 044559 432 MQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGY--------TIEVE 497 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~----p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~--------~~~~~ 497 (585)
.+.|.+|.+++.|+|.++|. .++.|++++|||++.-. ...|..|..+++|+++||-||+.- ++...
T Consensus 141 ~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~ 220 (677)
T PLN02582 141 FGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPP 220 (677)
T ss_pred eccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCC
Confidence 45678888999999988774 46789999999999764 556888888899977766666631 11000
Q ss_pred ---e--------cCCCcCC-----------CCCC--Ch-H---------------HHHHHhcCCCCCceeE-EE--cCHH
Q 044559 498 ---I--------HDGPYNV-----------IKNW--NY-T---------------GLVDAIHNGEGKCWTT-KV--FCEE 534 (585)
Q Consensus 498 ---~--------~~~~~~~-----------~~~~--d~-~---------------~la~a~G~~~~~~~~~-~V--~~~~ 534 (585)
+ ..+.|.. ++.. ++ . .+.++||+ +|+ .| .+.+
T Consensus 221 vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~-----~y~g~iDGHd~~ 295 (677)
T PLN02582 221 VGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL-----YYIGPVDGHNID 295 (677)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCC-----eEEeeeCCCCHH
Confidence 0 0111110 0000 01 0 35789999 777 45 4899
Q ss_pred HHHHHHHhhcCCCCCCeEEEEEEcCCCC
Q 044559 535 ELIEAIENATGPKKDCLCFIEVLVHKDD 562 (585)
Q Consensus 535 eL~~aL~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
+|.++|+++.+...++|+||.|.|.+..
T Consensus 296 ~L~~al~~~k~~~~~~P~vihv~T~KGk 323 (677)
T PLN02582 296 DLVTILREVKSTKTTGPVLIHVVTEKGR 323 (677)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 9999999987411269999999998643
No 150
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=98.18 E-value=1.1e-05 Score=91.60 Aligned_cols=118 Identities=21% Similarity=0.201 Sum_probs=93.5
Q ss_pred CCcccccchhHHHHhhhhcCC-----------CCcEEEEEccchhcc--cHHHHHHHHHhCCceEEEEEeCCcceeeeee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP-----------EKRVIACIGDGSFQV--TAQDVSTMLRCGQKTIIFLINNGGYTIEVEI 498 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p-----------~r~vv~v~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
...|+||.|++.|+|.+++++ +++|+||+|||-+.= +...+..|.+++|+=+|+|+|++...+
T Consensus 200 ~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~l---- 275 (896)
T PRK13012 200 FPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRL---- 275 (896)
T ss_pred cCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccc----
Confidence 346899999999999988754 378999999999987 466688889999988888888886655
Q ss_pred cCCCcCCCCC--CChHHHHHHhcCCCCCceeEEE--------------------------c-------------------
Q 044559 499 HDGPYNVIKN--WNYTGLVDAIHNGEGKCWTTKV--------------------------F------------------- 531 (585)
Q Consensus 499 ~~~~~~~~~~--~d~~~la~a~G~~~~~~~~~~V--------------------------~------------------- 531 (585)
+|+...... -++.+..++||+ ..++| +
T Consensus 276 -DG~v~~~~~~~~~l~~~f~a~GW-----~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff 349 (896)
T PRK13012 276 -DGPVRGNGRIIQELEALFRGAGW-----NVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFF 349 (896)
T ss_pred -cCccccccccchHHHHHHHhCCC-----EEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhc
Confidence 443332212 489999999999 88888 4
Q ss_pred --------------------------CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 532 --------------------------CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 532 --------------------------~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+.+++.+|+++|.+ ..++|+||-++|-+
T Consensus 350 ~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~-~~~~PtvIla~Tvk 403 (896)
T PRK13012 350 GQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVR-HKGQPTVILAKTKK 403 (896)
T ss_pred cccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh-CCCCCEEEEEEeee
Confidence 78889999988873 35689999999764
No 151
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=1.3e-05 Score=84.67 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=89.0
Q ss_pred cCCcccccchhHHHHhhhhcCC-----CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 431 QMQYGSIGWSVGATLGYAQSVP-----EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 431 ~~~~g~mG~~lpaAiGaalA~p-----~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
..+.|.+|.+|+.|+|.|++.. +-+|+|++|||..+-. ...+..|-+|+++-+|+|++|+..++ ++.-
T Consensus 114 ~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~-----~g~t 188 (632)
T KOG0523|consen 114 EVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISI-----DGAT 188 (632)
T ss_pred eeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccC-----CCCC
Confidence 3455888888888888877532 5689999999999874 44578888999999999999998876 2221
Q ss_pred CCCCCCChHH-HHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcCCCCCCeEEEEEEcC
Q 044559 504 NVIKNWNYTG-LVDAIHNGEGKCWTTKVF--CEEELIEAIENATGPKKDCLCFIEVLVH 559 (585)
Q Consensus 504 ~~~~~~d~~~-la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~ 559 (585)
..-...|..+ =.++||+ +...|. +.+++.+++.++.. ..++|.+|-..+-
T Consensus 189 ~~~~~~dV~~~r~ea~g~-----~~~~V~~~d~d~i~ka~~~a~~-~k~kpt~i~~~t~ 241 (632)
T KOG0523|consen 189 SLGFDEDVYQLRFEAFGW-----NVIIVDGGDVDEIRKAIGKAKS-VKGKPTAIKATTF 241 (632)
T ss_pred cccccccHHHHHHHHhCc-----eEEEEcCcCHHHHHHHHhhhhh-ccCCceeeeeeee
Confidence 1113455444 7899999 888885 68888999988863 5678988887764
No 152
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=98.10 E-value=2.2e-05 Score=88.96 Aligned_cols=118 Identities=21% Similarity=0.185 Sum_probs=93.4
Q ss_pred CCcccccchhHHHHhhhhcCC-----------CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP-----------EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEI 498 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p-----------~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
...++||.|++.|+|.+++++ +++|+||+|||-+.=. ...+..|.+++|+=+|+|+|.+...+
T Consensus 192 ~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~l---- 267 (891)
T PRK09405 192 FPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRL---- 267 (891)
T ss_pred cCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCccc----
Confidence 345889999999999988766 6889999999999873 66688899999988888888886654
Q ss_pred cCCCcCCC--CCCChHHHHHHhcCCCCCceeEEEc---------------------------------------------
Q 044559 499 HDGPYNVI--KNWNYTGLVDAIHNGEGKCWTTKVF--------------------------------------------- 531 (585)
Q Consensus 499 ~~~~~~~~--~~~d~~~la~a~G~~~~~~~~~~V~--------------------------------------------- 531 (585)
+++.... ..-++.+..++||+ ..++|.
T Consensus 268 -DG~v~~~~~~~~~l~~~f~a~GW-----~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ff 341 (891)
T PRK09405 268 -DGPVRGNGKIIQELEGIFRGAGW-----NVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFF 341 (891)
T ss_pred -CCccccccccchhHHHHHhhCCC-----EEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhc
Confidence 4433221 12478999999999 888882
Q ss_pred --------------------------CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 532 --------------------------CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 532 --------------------------~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+.++|.+|++++.+ ..++|+||-++|-+
T Consensus 342 g~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~-~~~~PtvIia~Tvk 395 (891)
T PRK09405 342 GKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVE-HKGQPTVILAKTIK 395 (891)
T ss_pred CCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHh-CCCCCEEEEEecee
Confidence 68899999988874 34789999999754
No 153
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.08 E-value=1.8e-05 Score=87.47 Aligned_cols=170 Identities=11% Similarity=0.112 Sum_probs=104.3
Q ss_pred cCHHHHHHHHHhhCC-CCCEEEecCCccccccc-------cccc---------cCC-CeeeecCCcccccchhHHHHhhh
Q 044559 387 LRVNVLFQHIQKMLS-SETAVIAETGDSWFNCQ-------KLKL---------PKG-CGYEFQMQYGSIGWSVGATLGYA 448 (585)
Q Consensus 387 i~~~~~~~~l~~~l~-~~~iiv~d~G~~~~~~~-------~~~~---------~~~-~~~~~~~~~g~mG~~lpaAiGaa 448 (585)
+..-++--+|..++. +.+-|+.|+|--.+... .|.. |++ -+-+...+.|--+.+|++|+|.+
T Consensus 123 LGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTGR~~~f~~Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a 202 (701)
T PLN02225 123 FAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLA 202 (701)
T ss_pred ccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcCChhhcCccccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 445556666666663 45566789995332111 1111 111 01122334455566788888888
Q ss_pred hc----CCCCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceeeeee-------c------------CCCc
Q 044559 449 QS----VPEKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI-------H------------DGPY 503 (585)
Q Consensus 449 lA----~p~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~-------~------------~~~~ 503 (585)
.| ..++.||+|+|||++. |....|..+...+-+ +|||+||+...+.... . ...|
T Consensus 203 ~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~-livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y 281 (701)
T PLN02225 203 VARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIF 281 (701)
T ss_pred HHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCC-EEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchH
Confidence 77 4567899999999985 567778888887777 5677788777773220 0 0011
Q ss_pred CC-----------CCCC---------------Ch--H-HHHHHhcCCCCCceeEEE---cCHHHHHHHHHhhcCCCCCCe
Q 044559 504 NV-----------IKNW---------------NY--T-GLVDAIHNGEGKCWTTKV---FCEEELIEAIENATGPKKDCL 551 (585)
Q Consensus 504 ~~-----------~~~~---------------d~--~-~la~a~G~~~~~~~~~~V---~~~~eL~~aL~~a~~~~~~gp 551 (585)
.. ++.. -. . .+.|.||+ +|+-. .+.++|..+|+++.+...++|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~-----~Y~GpvDGHdi~~Li~~l~~~k~~~~~~P 356 (701)
T PLN02225 282 RKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGL-----YYIGPVDGHNIEDLVCVLREVSSLDSMGP 356 (701)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCC-----eEECccCCCCHHHHHHHHHHHHcCCCCCC
Confidence 10 0100 00 1 36688888 67654 479999999999876223499
Q ss_pred EEEEEEcCCCC
Q 044559 552 CFIEVLVHKDD 562 (585)
Q Consensus 552 ~vIeV~v~~~~ 562 (585)
+||.|.|.+..
T Consensus 357 vlvHv~T~KGk 367 (701)
T PLN02225 357 VLVHVITEENR 367 (701)
T ss_pred EEEEEEecCCC
Confidence 99999997654
No 154
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=98.05 E-value=9.5e-06 Score=92.71 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=81.0
Q ss_pred ccccchhHHHHhhhhcC----CC------CcEEEEEccchh-cc-cHHH-HHHHHHhCCc---eEEEEEeCCcceeeeee
Q 044559 435 GSIGWSVGATLGYAQSV----PE------KRVIACIGDGSF-QV-TAQD-VSTMLRCGQK---TIIFLINNGGYTIEVEI 498 (585)
Q Consensus 435 g~mG~~lpaAiGaalA~----p~------r~vv~v~GDGsf-~~-~~~e-L~ta~~~~lp---v~ivV~NN~~~~~~~~~ 498 (585)
+-+|...|-|.|+++|. .+ .-+|++.|||+| .- ...| |.-|.-.++| +++||.|| .|++....
T Consensus 314 Shleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNN-q~g~tT~~ 392 (924)
T PRK09404 314 SHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINN-QIGFTTSP 392 (924)
T ss_pred cccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeC-CEEEeeCH
Confidence 55677788888888774 23 457889999998 33 3455 4445557787 77766665 57773111
Q ss_pred cCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 499 HDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 499 ~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
... ....+...+|++||+ .+++|+ |++.+..+.+.|++ .+.+||+|||+.+-|
T Consensus 393 ~~~----~s~~~~sd~Ak~~gi-----P~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR 449 (924)
T PRK09404 393 PDD----RSTPYCTDVAKMVQA-----PIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYR 449 (924)
T ss_pred HHh----ccchhHHHHHeecCC-----cEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEec
Confidence 111 123456889999999 899985 78888888777776 457899999999975
No 155
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=97.96 E-value=1.7e-05 Score=84.51 Aligned_cols=121 Identities=21% Similarity=0.289 Sum_probs=80.0
Q ss_pred CcccccchhHHHHhhhhc----CCCCcEEEEEccchh--cccHHHHHHHH-HhCCceEEEEEeCCcceeeee--------
Q 044559 433 QYGSIGWSVGATLGYAQS----VPEKRVIACIGDGSF--QVTAQDVSTML-RCGQKTIIFLINNGGYTIEVE-------- 497 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA----~p~r~vv~v~GDGsf--~~~~~eL~ta~-~~~lpv~ivV~NN~~~~~~~~-------- 497 (585)
+.|--+.+|++|+|.+.| ..++.||+++|||++ .|....|..+- ..+-| .|||+||+...|...
T Consensus 113 ~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~-~iVILNDNeMSIs~nvGal~~~L 191 (627)
T COG1154 113 GVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSN-LIVILNDNEMSISPNVGALSKHL 191 (627)
T ss_pred ccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCC-EEEEEeCCCcccCCCccHHHHHH
Confidence 344455567777777655 457899999999987 46666777776 22334 666777777766110
Q ss_pred --ec-CCCcCCC--------------------------C-CCChHHHHHHhcCCCCCceeEEE---cCHHHHHHHHHhhc
Q 044559 498 --IH-DGPYNVI--------------------------K-NWNYTGLVDAIHNGEGKCWTTKV---FCEEELIEAIENAT 544 (585)
Q Consensus 498 --~~-~~~~~~~--------------------------~-~~d~~~la~a~G~~~~~~~~~~V---~~~~eL~~aL~~a~ 544 (585)
+. .+.|..+ . -..-..+.|.||+ +|+-. .+.++|..+|+.+.
T Consensus 192 ~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf-----~YiGPiDGHni~~Li~~Lk~~k 266 (627)
T COG1154 192 ARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGF-----NYIGPIDGHNLEELIPTLKNAK 266 (627)
T ss_pred HHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCC-----eeECCcCCCCHHHHHHHHHHHh
Confidence 00 1111100 0 0111248889998 77654 47999999999998
Q ss_pred CCCCCCeEEEEEEcCCC
Q 044559 545 GPKKDCLCFIEVLVHKD 561 (585)
Q Consensus 545 ~~~~~gp~vIeV~v~~~ 561 (585)
+ .++|+||.|.|.+.
T Consensus 267 d--~~gPvllHv~T~KG 281 (627)
T COG1154 267 D--LKGPVLLHVVTKKG 281 (627)
T ss_pred c--CCCCEEEEEEecCC
Confidence 6 89999999999863
No 156
>PRK05261 putative phosphoketolase; Provisional
Probab=97.92 E-value=4.5e-05 Score=85.33 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=81.0
Q ss_pred CcccccchhHHHHhhhhcCCCCcEEEEEccchhccc-HHHHHHHH----HhCCceEEEEEeCCcceeeeeecCCCcC--C
Q 044559 433 QYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQDVSTML----RCGQKTIIFLINNGGYTIEVEIHDGPYN--V 505 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~eL~ta~----~~~lpv~ivV~NN~~~~~~~~~~~~~~~--~ 505 (585)
..|.+|++++.|+|+++.+++..|+|++|||.+.-. +...|-+. .+++.-++.|+++++|.|. ++.. .
T Consensus 140 ~~G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is-----~pt~~~~ 214 (785)
T PRK05261 140 EGGELGYSLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIA-----NPTILAR 214 (785)
T ss_pred CCCchhhHHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCC-----CCccccc
Confidence 358899999999999999999999999999995443 22234422 2456556667777888872 2211 1
Q ss_pred CCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHH--------HH-------hhcC-CCCCCeE--EEEEEcCC
Q 044559 506 IKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEA--------IE-------NATG-PKKDCLC--FIEVLVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~a--------L~-------~a~~-~~~~gp~--vIeV~v~~ 560 (585)
...-++.+.+++||+ +.+.|+ +++++.++ ++ +|.. ....+|. +|.+++.+
T Consensus 215 ~~~e~l~~rf~g~Gw-----~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~k 284 (785)
T PRK05261 215 ISDEELEALFRGYGY-----EPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPK 284 (785)
T ss_pred cCcHhHHHHHHHCCC-----eeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCc
Confidence 233589999999999 788886 56665555 33 3332 1115888 99998865
No 157
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=97.87 E-value=4.2e-05 Score=87.17 Aligned_cols=120 Identities=16% Similarity=0.086 Sum_probs=84.1
Q ss_pred CCcccccchhHHHHhhhhcCC----------CCcEEEEEccchh-cc-cHHH-HHHHHHhCCce--EEEEEeCCcceeee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP----------EKRVIACIGDGSF-QV-TAQD-VSTMLRCGQKT--IIFLINNGGYTIEV 496 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p----------~r~vv~v~GDGsf-~~-~~~e-L~ta~~~~lpv--~ivV~NN~~~~~~~ 496 (585)
.+-+-++.-.|-++|.+.|.. +.-+|++.|||+| .- ...| |.-+.-.++|+ +|+|+.|++|++..
T Consensus 312 ~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT 391 (929)
T TIGR00239 312 FNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTT 391 (929)
T ss_pred CCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEE
Confidence 344668888888889887742 2456889999998 33 3444 44456689998 56666666788732
Q ss_pred eecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 497 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 497 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
..... -........|++||+ .+++|+ +++....+.+.|++ .+.+||+|||+.+-|
T Consensus 392 ~~~~~----~s~~~~sd~Ak~ygi-----P~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR 450 (929)
T TIGR00239 392 NPLDA----RSTPYCSDLAKMIQA-----PIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYR 450 (929)
T ss_pred cHHHh----cCccCHHHHheecCC-----CEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 11000 123456789999999 899985 78888877777766 457899999999965
No 158
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.75 E-value=0.0008 Score=80.05 Aligned_cols=155 Identities=14% Similarity=0.074 Sum_probs=112.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhh---cC--CC-----CeEEeCcchHHHHHHHhHHhHhcCccEEEE
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLI---AE--PG-----LNLIGCCNELNAGYAADGYARSRGVGACVV 112 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~---~~--~~-----i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~ 112 (585)
.|+|.++++..... |++.+|++|=++..++.+.+. .. .+ .+++.+-+|.+|+.|+.|.+. +|.-+...
T Consensus 3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~~-aGara~T~ 80 (1165)
T TIGR02176 3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGALQ-TGALTTTF 80 (1165)
T ss_pred eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHhh-cCCCEEEe
Confidence 48999999999988 999999999888888877762 21 11 379999999999999999554 56545677
Q ss_pred eCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEE-EEEeCChhhHHHHHHH
Q 044559 113 TFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QAVVNNLEDAHELIDT 191 (585)
Q Consensus 113 tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~ 191 (585)
|||+|++-+...|..+.-.++|+++..+++.....+-. ..+ +..|- -..+. +-| ...-.+++++.++...
T Consensus 81 TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~-----i~~--dh~Dv-~~~R~-~G~ivl~s~svQEa~D~al~ 151 (1165)
T TIGR02176 81 TASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALS-----IFG--DHQDV-MAARQ-TGFAMLASSSVQEVMDLALV 151 (1165)
T ss_pred cChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCc-----cCC--CchHH-HHhhc-CCeEEEeCCCHHHHHHHHHH
Confidence 99999999999998777779999999998766532211 111 11121 11111 122 2223578899999999
Q ss_pred HHHHhhhcCCcEEEEec
Q 044559 192 AVSTALKESKPVYISVA 208 (585)
Q Consensus 192 A~~~a~~~~GPV~i~iP 208 (585)
|+++|...+-||.+.+-
T Consensus 152 A~~lAe~~~~Pvi~~~D 168 (1165)
T TIGR02176 152 AHLATIEARVPFMHFFD 168 (1165)
T ss_pred HHHHHHhcCCCEEEEec
Confidence 99999877778876654
No 159
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.59 E-value=0.00098 Score=79.33 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=79.0
Q ss_pred CcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeec-----CC------Cc-CCCCCCChHHHHHHhcC
Q 044559 454 KRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH-----DG------PY-NVIKNWNYTGLVDAIHN 520 (585)
Q Consensus 454 r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----~~------~~-~~~~~~d~~~la~a~G~ 520 (585)
+.|+++.||| ++-...+.|..+.+.|.+|++||+||..|+..-.+. -| ++ ......|...+|.++|.
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~g~ 1031 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTYGY 1031 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHCCC
Confidence 4799999999 667788999999999999999999999999821111 01 11 12357899999999998
Q ss_pred CCCCceeEEEc---CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 521 GEGKCWTTKVF---CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 521 ~~~~~~~~~V~---~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
. ...++. ++.++.+++++|.+ .+||.+|++...-
T Consensus 1032 ~----yvA~~~~~~~~~~~~~~~~~A~~--~~G~s~i~~~~pC 1068 (1165)
T TIGR02176 1032 V----YVAQVSMGANMQQTLKAFREAEA--YDGPSIVIAYSPC 1068 (1165)
T ss_pred C----EEEEEecccCHHHHHHHHHHHHc--CCCCEEEEEECCC
Confidence 2 233442 68999999999986 8999999999864
No 160
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=97.54 E-value=0.00025 Score=69.92 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=75.1
Q ss_pred CCcccccchhHHHHhhhhcCC----CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCC
Q 044559 432 MQYGSIGWSVGATLGYAQSVP----EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p----~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
+|.|-.|..+|.+.|+++|.. +.-++++-|||+.... ...+.-|.-++||+++|+ .|+.|||.-.. ...
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvC-ENN~yGMGTs~----~Ra 236 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVC-ENNHYGMGTSA----ERA 236 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEE-ccCCCccCcch----hhh
Confidence 456778889999999888743 4567889999999775 344566667899976655 55568882100 001
Q ss_pred CCCCChHHHHHHhcCCCCCceeEEEcCHH--HHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 506 IKNWNYTGLVDAIHNGEGKCWTTKVFCEE--ELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~V~~~~--eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
-..+||=+=. .| + .+++|+.-+ .+.+|.+.|.+ .+.+||.|+|..|-+
T Consensus 237 sa~teyykRG-~y-i-----PGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYR 288 (394)
T KOG0225|consen 237 SASTEYYKRG-DY-I-----PGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYR 288 (394)
T ss_pred hcChHHHhcc-CC-C-----CceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeee
Confidence 1234554433 11 3 788887433 44556655554 336899999999854
No 161
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=97.13 E-value=0.00028 Score=68.73 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=74.0
Q ss_pred ccccchhHHHHhhhhcCC-----CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeee---eecCCCcC
Q 044559 435 GSIGWSVGATLGYAQSVP-----EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEV---EIHDGPYN 504 (585)
Q Consensus 435 g~mG~~lpaAiGaalA~p-----~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~---~~~~~~~~ 504 (585)
+.+-..+|-|+|++.+.. ++-+|++.|||+.--. -..|.-|+-...|+++++ -|+||.|.- .++.+..
T Consensus 193 splatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~C-RNNG~AISTptseQyr~DG- 270 (432)
T KOG1182|consen 193 SPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFC-RNNGWAISTPTSEQYRGDG- 270 (432)
T ss_pred chhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEE-cCCCeeeccccHHHhcCCc-
Confidence 345667788888876532 4789999999987653 335667778889976655 555688831 1111111
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHH--HHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEEL--IEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL--~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
++.-..+||+ ..+||+..+-| -.|.++|.+ ...++|+|||.++-+
T Consensus 271 ------Ia~kG~aYGi-----~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYR 319 (432)
T KOG1182|consen 271 ------IAVKGPAYGI-----RSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYR 319 (432)
T ss_pred ------eEEeccccce-----EEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhh
Confidence 1112358898 99999876554 345666554 347899999998753
No 162
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.00 E-value=0.006 Score=55.55 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=77.6
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhc
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH 519 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 519 (585)
+..+|.|++.+.....++..+..-++...++.|.+|...++|+++|..+-....... ..+...|...+.+.+-
T Consensus 46 A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~~~~~~-------~~~q~~d~~~~~~~~~ 118 (155)
T cd07035 46 AVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGR-------GAFQEIDQVALFRPIT 118 (155)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCccccccC-------CcccccCHHHHHHHHh
Confidence 456788888775333355555588888889999999999999999988777654311 1123467788888886
Q ss_pred CCCCCceeEEEcCHHHHHHHHHhhcC--C-CCCCeEEEEEE
Q 044559 520 NGEGKCWTTKVFCEEELIEAIENATG--P-KKDCLCFIEVL 557 (585)
Q Consensus 520 ~~~~~~~~~~V~~~~eL~~aL~~a~~--~-~~~gp~vIeV~ 557 (585)
. ..+++++++++.+.+++|+. . ...+|+.|++.
T Consensus 119 ~-----~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 119 K-----WAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred c-----eEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 5 78899999998888888776 2 23689999874
No 163
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.91 E-value=0.0065 Score=55.96 Aligned_cols=119 Identities=9% Similarity=-0.026 Sum_probs=82.2
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEE-EccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIAC-IGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v-~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+. .-+|-|.+.+. +++.+++ +..-++...+..+.+|...++|+++|..+-...... . .
T Consensus 39 i~~v~~rhE~~A---~~mA~gyar~t-g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~~----~---~ 107 (164)
T cd07039 39 IEFIQVRHEEAA---AFAASAEAKLT-GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELG----T---D 107 (164)
T ss_pred CeEEEeCCHHHH---HHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCcccccC----C---C
Confidence 445544443332 24667777664 4555544 445566667899999999999999998765533211 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-. +..++++++++.+++++|+. ....||+.|||..|-
T Consensus 108 ~~q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~dv 160 (164)
T cd07039 108 YFQEVDLLALFKDVAV-----YNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGDV 160 (164)
T ss_pred CCcccCHHHHHHHhhc-----EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChHH
Confidence 2345688999999987 89999999888888877765 225699999998774
No 164
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=96.80 E-value=0.0018 Score=57.02 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCCccc
Q 044559 244 AAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGL 292 (585)
Q Consensus 244 ~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~ 292 (585)
-++.++++||||++++|..+.+.+..+.+.+|+|+.++|+++|....+.
T Consensus 27 v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~ 75 (170)
T COG1880 27 VVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGN 75 (170)
T ss_pred HHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcc
Confidence 3567899999999999999987788899999999999999999876543
No 165
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.77 E-value=0.0076 Score=56.01 Aligned_cols=119 Identities=11% Similarity=0.148 Sum_probs=86.1
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-. .+..+|-|.+.+. +|+.++++-=| ++.-.+..|.+|...++|+++|...-..+... .
T Consensus 39 ~i~~i~~~~E~---~A~~~A~g~ar~~-g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~----~--- 107 (172)
T PF02776_consen 39 GIRFIPVRHEQ---GAAFMADGYARAT-GRPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEG----R--- 107 (172)
T ss_dssp TSEEEE-SSHH---HHHHHHHHHHHHH-SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTT----T---
T ss_pred ceeeecccCcc---hhHHHHHHHHHhh-ccceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhc----c---
Confidence 45566555433 2446777877765 56766666544 56667899999999999999999887766542 1
Q ss_pred CCCC-CCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 504 NVIK-NWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 504 ~~~~-~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
..+. ..|...+++.+.. ..+++++++++.+++++|+. ....+|+.|+|..|
T Consensus 108 ~~~q~~~d~~~~~~~~~k-----~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 108 GAFQQEIDQQSLFRPVTK-----WSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp TSTTSSTHHHHHHGGGSS-----EEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred cccccchhhcchhccccc-----hhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 1122 4688999999987 89999999998888888775 35789999999876
No 166
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=96.33 E-value=0.2 Score=45.64 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=74.4
Q ss_pred eEE-eCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHH-HhhhcCCcEEEEeCCCCCcccCCccccccccCCC
Q 044559 84 NLI-GCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIA-GAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160 (585)
Q Consensus 84 ~~i-~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~-~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~ 160 (585)
|++ ....|++.+.+|.|.|.. |. .++. +...-..-++..|. .+-..+.||+++........ +.+..-|
T Consensus 40 r~i~~gIaE~~~vg~A~GlA~~-G~~pi~~-~~~~f~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~-~~~G~tH------ 110 (156)
T cd07033 40 RFIDVGIAEQNMVGIAAGLALH-GLKPFVS-TFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISV-GEDGPTH------ 110 (156)
T ss_pred CeEEeChhHHHHHHHHHHHHHC-CCeEEEE-ECHHHHHHHHHHHHHHHhccCCCeEEEEECCcEec-CCCCccc------
Confidence 555 567999999999999975 55 5555 44444445777777 77889999999987543321 1211223
Q ss_pred ChhHHHhhhcceeEEE-EEeCChhhHHHHHHHHHHHhhhcCCcEEEEecC
Q 044559 161 DFSQELRCFQTVTCYQ-AVVNNLEDAHELIDTAVSTALKESKPVYISVAC 209 (585)
Q Consensus 161 ~~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~ 209 (585)
+..++..+++.+.... +...+++++..+++.|++ .++|++|.+|.
T Consensus 111 ~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~----~~~P~~irl~~ 156 (156)
T cd07033 111 QGIEDIALLRAIPNMTVLRPADANETAAALEAALE----YDGPVYIRLPR 156 (156)
T ss_pred chHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh----CCCCEEEEeeC
Confidence 2345677888775433 444566777777666654 46799999873
No 167
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.13 E-value=0.035 Score=50.20 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=70.8
Q ss_pred hhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHh
Q 044559 440 SVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+..+|.|++.+.. +.++.++ |.|. ......|.++...++|+++|+-..+..... .+ .....|...+++.+
T Consensus 47 a~~~A~G~a~~~~-~~v~~~~~gpg~-~~~~~~l~~a~~~~~Pvl~i~~~~~~~~~~----~~---~~q~~~~~~~~~~~ 117 (154)
T cd06586 47 AAGAAAGYARAGG-PPVVIVTSGTGL-LNAINGLADAAAEHLPVVFLIGARGISAQA----KQ---TFQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHHhhC-CEEEEEcCCCcH-HHHHHHHHHHHhcCCCEEEEeCCCChhhhc----cC---cccccCHHHHHHHh
Confidence 4578888888754 5555556 6664 455677888989999988877655543221 11 12456778888888
Q ss_pred cCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEE
Q 044559 519 HNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVL 557 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~ 557 (585)
.. ....+.+.+++.+.+.+++. ....||++|++.
T Consensus 118 ~~-----~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 118 PE-----ANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred hh-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 76 67778888877766666654 224789999874
No 168
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.01 E-value=0.038 Score=50.76 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=73.5
Q ss_pred hhHHHHhhhhcCCCCcEEE-EEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeee--eecCCCcCCCCCC-ChHHHH
Q 044559 440 SVGATLGYAQSVPEKRVIA-CIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEV--EIHDGPYNVIKNW-NYTGLV 515 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~-v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~--~~~~~~~~~~~~~-d~~~la 515 (585)
+.-+|-|.+.+. + +.+| ++...++...+..|.+|...+.|+++|..+...-...+ .++.. ..+ ... |...++
T Consensus 47 A~~mA~gyar~t-~-~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~-~~~-~~~~d~~~~~ 122 (162)
T cd07038 47 AGYAADGYARVK-G-LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHT-LGD-GDFDVFLKMF 122 (162)
T ss_pred HHHHHHHHHHhh-C-CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCccccccccceeec-ccc-cchHHHHHHH
Confidence 345677777776 4 5554 44666777789999999999999999987765332211 00100 000 112 467888
Q ss_pred HHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEE
Q 044559 516 DAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVL 557 (585)
Q Consensus 516 ~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~ 557 (585)
+.+.- +..+|++++++.+++++|+. ....||+.||+.
T Consensus 123 ~~~tk-----~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 123 EEITC-----AAARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred Hhhee-----EEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 88876 88899999998888888776 223489999974
No 169
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.53 E-value=0.051 Score=49.85 Aligned_cols=105 Identities=11% Similarity=0.102 Sum_probs=70.6
Q ss_pred hhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHh
Q 044559 440 SVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+.+. +++.++++. --++...+..+.+|...+.|+++|..+-...... . ..+...|-..+.+.+
T Consensus 47 A~~mAdgyar~s-g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~----~---~~~q~~d~~~l~~~v 118 (162)
T cd07037 47 AAFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPELRG----T---GANQTIDQVGLFGDY 118 (162)
T ss_pred HHHHHHHHHHhh-CCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCHHhcC----C---CCCcccchhhhccce
Confidence 345777877765 566666554 4455556889999999999999988654332211 1 113446777777777
Q ss_pred cCCCCCceeEEEcCHHH------HHHHHHhhcC---CCCCCeEEEEEE
Q 044559 519 HNGEGKCWTTKVFCEEE------LIEAIENATG---PKKDCLCFIEVL 557 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~e------L~~aL~~a~~---~~~~gp~vIeV~ 557 (585)
-. +..+++++++ +.+.+++|+. ....||++||+.
T Consensus 119 tk-----~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 119 VR-----WSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred ee-----EEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 65 7788888777 6666666654 235699999985
No 170
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=95.08 E-value=0.027 Score=57.10 Aligned_cols=95 Identities=14% Similarity=0.195 Sum_probs=56.5
Q ss_pred cccccchhHHHHhhhhcCCCCcEEEEEccchhccc-HHHHHHHHHh-C---CceEEEEEeCCcceeeeeecCCCcCCCCC
Q 044559 434 YGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQDVSTMLRC-G---QKTIIFLINNGGYTIEVEIHDGPYNVIKN 508 (585)
Q Consensus 434 ~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~eL~ta~~~-~---lpv~ivV~NN~~~~~~~~~~~~~~~~~~~ 508 (585)
.|-+||+++-|.||.+-+||.-|+|++|||.+--. ...=|.+.++ + -..++=|+.=+||.|.. .-.+..+.+
T Consensus 139 GGELGYaLshA~GA~~DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~---pTil~r~~~ 215 (379)
T PF09364_consen 139 GGELGYALSHAFGAVFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKISN---PTILARMSD 215 (379)
T ss_dssp -SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSS---B-HHHHS-H
T ss_pred CcchhhHHHHHhhcccCCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCccccC---CeEeeecCH
Confidence 46799999999999999999999999999997654 2233333332 1 12444444445677621 001223345
Q ss_pred CChHHHHHHhcCCCCCceeEEEcC--HHHH
Q 044559 509 WNYTGLVDAIHNGEGKCWTTKVFC--EEEL 536 (585)
Q Consensus 509 ~d~~~la~a~G~~~~~~~~~~V~~--~~eL 536 (585)
-++.++.+++|. +-+.|+. ++++
T Consensus 216 ~eL~~lf~G~Gy-----~p~~Veg~dp~~~ 240 (379)
T PF09364_consen 216 EELEALFRGYGY-----EPIFVEGDDPADM 240 (379)
T ss_dssp HHHHHHHHHTTE-----EEEEEE---HHHH
T ss_pred HHHHHHHHhCCC-----eEEEEecCCHHHH
Confidence 668899999998 6666654 4444
No 171
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=94.99 E-value=0.21 Score=45.56 Aligned_cols=106 Identities=17% Similarity=0.059 Sum_probs=70.6
Q ss_pred chhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHH-HhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHH
Q 044559 439 WSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTML-RCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDA 517 (585)
Q Consensus 439 ~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~-~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a 517 (585)
.+.++|-|+.++ .+++++++.+=| +...++.|.++. .+++|+++|+-.-+.++-...-+.+ ...+ -..+.+.
T Consensus 45 ~aa~~aAg~~~~-~~~~~v~~~~sG-~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~-~g~~----~~~~l~~ 117 (157)
T TIGR03845 45 EGVGICAGAYLA-GKKPAILMQSSG-LGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQIP-MGRA----TPKLLDT 117 (157)
T ss_pred HHHHHHHHHHHh-cCCcEEEEeCCc-HHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccc-hhhh----hHHHHHH
Confidence 345666666666 567888888887 567799999999 9999999999777765542100000 0000 1123355
Q ss_pred hcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEE
Q 044559 518 IHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVL 557 (585)
Q Consensus 518 ~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~ 557 (585)
++. .+.++++++++ .++++|+. .+.++|+.|=|.
T Consensus 118 ~~i-----~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 118 LGI-----PYTIPREPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred cCC-----CeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 666 68889999999 88888875 234589887553
No 172
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=94.98 E-value=0.54 Score=43.31 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=70.1
Q ss_pred EE-eCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHHHHHhhhc-CCcEEEEeCCCCCcccCCccccccccCCCCh
Q 044559 85 LI-GCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSE-NLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162 (585)
Q Consensus 85 ~i-~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l~~A~~~-~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~ 162 (585)
++ ....|++.+.+|.|+|....+.++ .+..+-..-+...+..+-.. ++|+|+.... ....+....-| +.
T Consensus 51 ~~~~gIaE~~~vg~a~GlA~~G~~pi~-~~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~--g~~~g~~G~tH------~~ 121 (168)
T smart00861 51 VIDTGIAEQAMVGFAAGLALAGLRPVV-AIFFTFFDRAKDQIRSDGAMGRVPVVVRHDS--GGGVGEDGPTH------HS 121 (168)
T ss_pred EEEcCcCHHHHHHHHHHHHHcCCCcEE-EeeHHHHHHHHHHHHHhCcccCCCEEEEecC--ccccCCCCccc------cc
Confidence 44 677999999999999998654433 34455555555555554444 4776665521 11112211122 34
Q ss_pred hHHHhhhcceeEE-EEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecC
Q 044559 163 SQELRCFQTVTCY-QAVVNNLEDAHELIDTAVSTALKESKPVYISVAC 209 (585)
Q Consensus 163 ~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~ 209 (585)
.++..+++.+... .+...+++++..+++.|++ ...||++|.++.
T Consensus 122 ~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~~~~ 166 (168)
T smart00861 122 QEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIRLER 166 (168)
T ss_pred hhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCCEEEEecC
Confidence 4567788887543 3556778888888888772 236899999874
No 173
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=94.73 E-value=0.81 Score=43.39 Aligned_cols=114 Identities=15% Similarity=0.066 Sum_probs=71.1
Q ss_pred HHHHHhHHhHhcC-c-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCcccccc------ccC-CCChhH
Q 044559 94 AGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHH------TIG-LPDFSQ 164 (585)
Q Consensus 94 A~~~A~Gyar~tg-~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~------~~~-~~~~~d 164 (585)
+.-+|.|.+.+.. + .+|++-= -++.-.+..|..|...++|+++|.-+......-+. .|+ ..+ .....|
T Consensus 58 ~lpaaiGa~la~p~r~vv~i~GD-G~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~--~q~~~~~~~~~~~~~~~~d 134 (196)
T cd02013 58 ALPAIIGAKAAAPDRPVVAIAGD-GAWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKK--NQVDFYNNRFVGTELESES 134 (196)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcc-hHHhccHHHHHHHHHhCCCeEEEEEECchhHHHHH--HHHHHcCCCcccccCCCCC
Confidence 5557888776653 4 4444332 33333568899999999999999865443211100 000 000 001235
Q ss_pred HHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 165 ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 165 q~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
...+.+.+-....++.+++++...+++|+..+ ...||+.|++..|-
T Consensus 135 ~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~-~~~~p~liev~v~~ 180 (196)
T cd02013 135 FAKIAEACGAKGITVDKPEDVGPALQKAIAMM-AEGKTTVIEIVCDQ 180 (196)
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHHHhcC-CCCCeEEEEEEeCc
Confidence 56777777667789999998888888877542 24789999999763
No 174
>PLN02470 acetolactate synthase
Probab=94.49 E-value=0.53 Score=52.77 Aligned_cols=119 Identities=12% Similarity=0.034 Sum_probs=82.9
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +.-+|-|.+.+. +++.+|++-=| +....+..+.+|-..+.|+++|...-....+. .
T Consensus 51 ~i~~i~~rhE~~---A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~----~--- 119 (585)
T PLN02470 51 CIRNVLCRHEQG---EVFAAEGYAKAS-GKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIG----T--- 119 (585)
T ss_pred CceEEEeccHHH---HHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhcC----C---
Confidence 455665554332 445688887765 46766665444 44445889999999999999998755433221 1
Q ss_pred CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
..+...|...+++.+-. ...+|.+++++...+++|+. ....||+.|||..|
T Consensus 120 ~~~q~~d~~~l~~~~tk-----~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 120 DAFQETPIVEVTRSITK-----HNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred CcCcccchhhhhhhheE-----EEEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 11344677888888876 78889999999888888865 23469999999987
No 175
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=94.40 E-value=0.77 Score=51.96 Aligned_cols=118 Identities=16% Similarity=0.079 Sum_probs=77.9
Q ss_pred eEE-eCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCCh
Q 044559 84 NLI-GCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162 (585)
Q Consensus 84 ~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~ 162 (585)
|+| ...-|++++.+|.|+|+..|.-.++.|..+=+.-+...+..+-+.+.||+++....... .+.+..- +|.
T Consensus 397 rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~-~G~dG~T------Hq~ 469 (653)
T TIGR00232 397 NYIHYGVREFAMGAIMNGIALHGGFKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIG-VGEDGPT------HQP 469 (653)
T ss_pred CeEeecccHHHHHHHHHHHHHcCCCeEEEEEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccC-CCCCCcc------cCC
Confidence 555 57899999999999999878744445666655556778888888999999987443332 2222222 344
Q ss_pred hHHHhhhcceeEE-EEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 163 SQELRCFQTVTCY-QAVVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 163 ~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
..++.+++.+... .++..++.++..+++.|++ ...||+||.++..-
T Consensus 470 iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~---~~~gP~~irl~r~~ 516 (653)
T TIGR00232 470 IEQLASLRAIPNLSVWRPCDGNETAAAWKYALE---SQDGPTALILSRQN 516 (653)
T ss_pred HHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh---cCCCcEEEEEcCCc
Confidence 5678888877442 3344455555555444442 34799999999753
No 176
>PRK07524 hypothetical protein; Provisional
Probab=94.38 E-value=0.21 Score=55.31 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=77.6
Q ss_pred hhHHHHhhhhcCCCCcEEE-EEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCC-CChHHHHHH
Q 044559 440 SVGATLGYAQSVPEKRVIA-CIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKN-WNYTGLVDA 517 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~-v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~-~d~~~la~a 517 (585)
+.-+|-|.+... +++.+| ++..-++.-.+..|.+|-+.++|+++|..........+ +. ..+.. .|-..+++.
T Consensus 51 A~~mAdgyar~t-g~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~----~~-~~~~~~~d~~~l~~~ 124 (535)
T PRK07524 51 AGFMADGYARVS-GKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGK----GR-GKLHELPDQRAMVAG 124 (535)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhhcCC----CC-ccccccccHHHHhhh
Confidence 456788888765 455444 45444566668999999999999999987654332210 00 01122 578889999
Q ss_pred hcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 518 IHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 518 ~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
+-. ...+|.+++++.+.+++|+. ....||+.|++..|
T Consensus 125 ~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 125 VAA-----FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred hce-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 886 88999999999888888875 23469999999876
No 177
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=94.38 E-value=0.17 Score=56.48 Aligned_cols=120 Identities=8% Similarity=-0.032 Sum_probs=80.5
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ .--++...+..|.+|...++|+++|...-..... +....
T Consensus 48 i~~i~~rhE~~---A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~-----~~~~~ 118 (569)
T PRK09259 48 IRYIGFRHEQS---AGNAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIV-----DLQQG 118 (569)
T ss_pred CCEEeeCCHHH---HHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCcccc-----cccCC
Confidence 44554443322 335666766654 45656554 4556666789999999999999999875432110 00011
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+..+|...+++.+-- ...+|++++++...+++|+. ....||+.|+|..|
T Consensus 119 ~~q~~d~~~~~~~~tk-----~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 119 DYEELDQLNAAKPFCK-----AAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred Cccccchhhhhhhhee-----eeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 2345788888888876 78899999998888877775 23468999999976
No 178
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.35 E-value=0.18 Score=56.21 Aligned_cols=121 Identities=8% Similarity=-0.007 Sum_probs=81.9
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++-+|++ .--++.-.++.+.+|...+.|+++|...-..... .... .
T Consensus 41 i~~i~~rhE~~---A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~--~~~~---~ 111 (554)
T TIGR03254 41 MRYIGFRHEQS---AGYAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIV--DLQQ---G 111 (554)
T ss_pred CcEEEeCCHHH---HHHHHHHHHHHh-CCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCcccc--ccCC---C
Confidence 34554443322 335677777664 45555554 3556666789999999999999999876543211 0001 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-. ...+|++++++.+.|++|+. ....||+.|+|..|-
T Consensus 112 ~~q~~d~~~~~~~vtk-----~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 112 DYEEMDQLAAAKPFAK-----AAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV 165 (554)
T ss_pred CcchhhHHHHhhhhhe-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence 2345688899999886 88899999998888877765 235689999999773
No 179
>PRK08611 pyruvate oxidase; Provisional
Probab=94.29 E-value=0.18 Score=56.36 Aligned_cols=119 Identities=8% Similarity=0.011 Sum_probs=82.2
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++- --++.-.+..|.+|-..++|+++|...-...... . .
T Consensus 44 i~~i~~rhE~~---A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~----~---~ 112 (576)
T PRK08611 44 IKFIQVRHEEV---AALAAAAYAKLT-GKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLG----T---D 112 (576)
T ss_pred CeEEEeCcHHH---HHHHHHHHHHHh-CCceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccccC----C---C
Confidence 44554443222 335777777664 567666663 3345556789999999999999998765544321 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.+..+|...+++.+.. ...++++++++..++++|+. ....||+.|++..|-
T Consensus 113 ~~q~~d~~~l~~~itk-----~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 113 FFQEVNLEKMFEDVAV-----YNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred CccccCHHHHhhcccc-----eeEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhh
Confidence 2344688899999876 78899999998887777764 224699999999873
No 180
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.27 E-value=0.41 Score=53.63 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=80.9
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEE-EccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIAC-IGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v-~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +.-+|-|.+.+. +++.+|+ +.--+++..+..|.+|...+.|+++|...=..... + .
T Consensus 59 ~i~~i~~rhE~~---A~~~AdgYar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~------~-~ 127 (587)
T PRK06965 59 KIQHVLVRHEQA---AVHAADGYARAT-GKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAI------G-Q 127 (587)
T ss_pred CCeEEEeCCHHH---HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc------C-C
Confidence 345665554433 335788888775 4555544 44456666789999999999999998753221111 0 1
Q ss_pred CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
..+..+|...+++.+-- ...+|++++++.+.+++|+. ....||+.|+|..|-
T Consensus 128 ~~~q~~d~~~l~~~itk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 128 DAFQECDTVGITRPIVK-----HNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred CCcccccHHHHhcCCcc-----eeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 12344688888888876 78899999988777777765 234699999999873
No 181
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=94.24 E-value=0.13 Score=46.67 Aligned_cols=118 Identities=19% Similarity=0.079 Sum_probs=71.0
Q ss_pred CeEEeC---cchHHHHHHHhHHhHhc-Cc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCcccccccc
Q 044559 83 LNLIGC---CNELNAGYAADGYARSR-GV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTI 157 (585)
Q Consensus 83 i~~i~~---~~E~~A~~~A~Gyar~t-g~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~ 157 (585)
-+++.. -.=..+.-+|.|.+.+. ++ .++++ ---++.-.+..|..|...++|+++|.-+......-+.. ++..
T Consensus 19 ~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~-GDG~f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~--~~~~ 95 (153)
T PF02775_consen 19 RRFLTSGGFGSMGYALPAAIGAALARPDRPVVAIT-GDGSFLMSLQELATAVRYGLPVVIVVLNNGGYGMTGGQ--QTPF 95 (153)
T ss_dssp TEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEE-EHHHHHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHHH--HHHT
T ss_pred CeEEcCCCccccCCHHHhhhHHHhhcCcceeEEec-CCcceeeccchhHHHhhccceEEEEEEeCCcceEeccc--cccC
Confidence 455542 23345667888888875 45 44444 33344445889999999999999998876442111100 0000
Q ss_pred CC----------CChhHHHhhhcceeEEEEEeCCh--hhHHHHHHHHHHHhhhcCCcEEEEe
Q 044559 158 GL----------PDFSQELRCFQTVTCYQAVVNNL--EDAHELIDTAVSTALKESKPVYISV 207 (585)
Q Consensus 158 ~~----------~~~~dq~~~~~~~tk~~~~v~~~--~~~~~~l~~A~~~a~~~~GPV~i~i 207 (585)
+. ....|...+.+.+--...+++.+ +++.+.+++|+ ..+||+.|++
T Consensus 96 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 96 GGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp TSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred cCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 00 11235566777774447788877 76666666555 6689999986
No 182
>PRK08322 acetolactate synthase; Reviewed
Probab=94.24 E-value=0.18 Score=56.02 Aligned_cols=108 Identities=8% Similarity=0.074 Sum_probs=77.1
Q ss_pred hhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHh
Q 044559 440 SVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|.|.+.+. +++.++++- .-++...+..+.+|-..++|+++|..+=...... . ..+...|...+++.+
T Consensus 50 A~~~A~gyar~t-g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~----~---~~~q~~d~~~~~~~~ 121 (547)
T PRK08322 50 AAFMAATYGRLT-GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSK----Q---GSFQIVDVVAMMAPL 121 (547)
T ss_pred HHHHHHHHHHhh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccC----C---CccccccHHHHhhhh
Confidence 346788887765 456666554 4456667899999999999999998654433221 1 112346888888887
Q ss_pred cCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 519 HNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
-- ...+|++++++.+.+++|+. ....||+.|+|..|-
T Consensus 122 tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (547)
T PRK08322 122 TK-----WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDI 161 (547)
T ss_pred ee-----EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 65 78899999998888887775 234689999999873
No 183
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=94.24 E-value=3.7 Score=42.78 Aligned_cols=155 Identities=17% Similarity=0.083 Sum_probs=84.1
Q ss_pred CcHHHHHHHHHHHcCCC--EEEecCCCCh-----HHHHHhhhcCC-CCeEE-eCcchHHHHHHHhHHhHhcCccEEEEeC
Q 044559 44 STLGRHLARRLVQIGAT--DVFSVPGDFN-----LTLLDHLIAEP-GLNLI-GCCNELNAGYAADGYARSRGVGACVVTF 114 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~--~vFg~PG~~~-----~~l~~al~~~~-~i~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~ts 114 (585)
++..+++.+.|.+..-+ .++.+.++.. ...++.+.+.- .=|++ ....|++++.+|.|+|....+.++....
T Consensus 35 ~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~~f 114 (355)
T PTZ00182 35 MNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEFMF 114 (355)
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEech
Confidence 46667777777766443 3444444322 33344454321 13455 5679999999999999963346665433
Q ss_pred ChhhHHHHHHHHH--hhh-------cCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEE-EeCChhh
Q 044559 115 TVGGLSVLNAIAG--AYS-------ENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQA-VVNNLED 184 (585)
Q Consensus 115 GpG~~n~~~~l~~--A~~-------~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~-~v~~~~~ 184 (585)
.+=+..++--|.+ |+. -++||+++...-. .+.+..-|+ +.. ..+++.+..... ...++.+
T Consensus 115 a~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~---~g~~G~tHs-----~~~--ea~lr~iPn~~V~~Psd~~e 184 (355)
T PTZ00182 115 ADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGA---VGHGGAYHS-----QSF--EAYFAHVPGLKVVAPSDPED 184 (355)
T ss_pred hhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCC---CCCCCCccc-----chH--HHHHhcCCCCEEEeeCCHHH
Confidence 3333333433322 333 3688887642211 111111221 122 267777654332 3345666
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 044559 185 AHELIDTAVSTALKESKPVYISVACNLP 212 (585)
Q Consensus 185 ~~~~l~~A~~~a~~~~GPV~i~iP~dv~ 212 (585)
+..+++.|++ ..||+||..|..+.
T Consensus 185 ~~~~l~~a~~----~~~P~~i~~p~~l~ 208 (355)
T PTZ00182 185 AKGLLKAAIR----DPNPVVFFEPKLLY 208 (355)
T ss_pred HHHHHHHHHh----CCCcEEEEeehHHh
Confidence 6666666553 47999998887654
No 184
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.18 E-value=0.18 Score=56.38 Aligned_cols=120 Identities=8% Similarity=0.048 Sum_probs=82.9
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +.-+|-|.+.+. +++-+|++. --++...+..+.+|...+.|+++|...=...... .
T Consensus 42 ~i~~i~~rhE~~---A~~mAdgYar~t-g~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~----~--- 110 (574)
T PRK07979 42 GIDHVLVRHEQA---AVHMADGLARAT-GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIG----Y--- 110 (574)
T ss_pred CceEEEeCcHHH---HHHHHHHHHHHh-CCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhccC----C---
Confidence 345555544332 335788887765 456555553 3355557899999999999999998654433211 1
Q ss_pred CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
..+...|...+++.+-. ...+|++++++...+++|+. ....||+.|+|..|-
T Consensus 111 ~~~q~~d~~~l~~~~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 111 DAFQECDMVGISRPVVK-----HSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred CCCceecHHHHhhcccc-----eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 12344788888998876 78899999999888888875 234699999998874
No 185
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=94.12 E-value=0.07 Score=58.31 Aligned_cols=82 Identities=23% Similarity=0.341 Sum_probs=54.8
Q ss_pred cccccchhHHHHhhhhcCCCCcEEEEEccc-h----hcccHHH--HHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCC
Q 044559 434 YGSIGWSVGATLGYAQSVPEKRVIACIGDG-S----FQVTAQD--VSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVI 506 (585)
Q Consensus 434 ~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-s----f~~~~~e--L~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~ 506 (585)
.|-+||+++-|.||++-+|+.-+.|++||| + ..++... ++...+-+-=+-|+++| ||.|.. .-.+..+
T Consensus 152 GGeLGy~l~ha~gAa~d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lN--GykI~n---pT~lar~ 226 (793)
T COG3957 152 GGELGYALSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLN--GYKIEN---PTVLARI 226 (793)
T ss_pred CcchhHHHHHHHHhhcCCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEec--ceeccC---ceeeeec
Confidence 467999999999999999999999999999 2 2333222 33334444334444454 677631 1112334
Q ss_pred CCCChHHHHHHhcC
Q 044559 507 KNWNYTGLVDAIHN 520 (585)
Q Consensus 507 ~~~d~~~la~a~G~ 520 (585)
.+-++.++.+++|.
T Consensus 227 s~~el~~~f~G~Gy 240 (793)
T COG3957 227 SDEELKALFEGYGY 240 (793)
T ss_pred ChHHHHHHHhhCCC
Confidence 56678889999998
No 186
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.09 E-value=0.2 Score=56.24 Aligned_cols=120 Identities=11% Similarity=0.030 Sum_probs=82.3
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
..+++....-.+ +.-+|-|.+... +++-+|++ ---++.-.++.|.+|...+.|+++|...-...... .
T Consensus 49 ~i~~I~~rhE~~---A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~----~--- 117 (595)
T PRK09107 49 DIQHILVRHEQG---AGHAAEGYARST-GKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIG----S--- 117 (595)
T ss_pred CCeEEEECChHH---HHHHHHHHHHHh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhhcC----C---
Confidence 345555544332 345677877664 45555554 44466667899999999999999998755433221 1
Q ss_pred CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
..+..+|...+++.+-- ...+|++++++...+++|+. ....||+.|+|..|-
T Consensus 118 ~~~q~~d~~~l~~~vtk-----~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 118 DAFQECDTVGITRPCTK-----HNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred CCCcccchhhhhhhheE-----EEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 12344688888888876 78889999998888888775 233699999999874
No 187
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.08 E-value=0.2 Score=55.35 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=79.2
Q ss_pred hhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHh
Q 044559 440 SVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+.+. +++-||++ .-=++...+..|.+|..-+.|+++|...=....+. ...+...|...+.+.+
T Consensus 51 Aa~mAdgyar~T-GkpgV~~~tsGPGatN~~tgla~A~~d~~Pll~itGqv~~~~~g-------~~afQe~D~~~l~~p~ 122 (550)
T COG0028 51 AAFAADGYARAT-GKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIG-------TDAFQEVDQVGLFRPI 122 (550)
T ss_pred HHHHHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCccccccC-------cchhhhcchhhHhhhh
Confidence 456788887764 56655554 33366667889999999999999988732222221 1223457999999999
Q ss_pred cCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 519 HNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
-- +.++|.+++++.+.+++|+. ....||++|++..|-
T Consensus 123 tk-----~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv 162 (550)
T COG0028 123 TK-----YNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDV 162 (550)
T ss_pred he-----eEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence 87 89999999999999999886 345689999998763
No 188
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=94.07 E-value=0.25 Score=55.32 Aligned_cols=108 Identities=5% Similarity=-0.019 Sum_probs=78.3
Q ss_pred hHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhc
Q 044559 441 VGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH 519 (585)
Q Consensus 441 lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 519 (585)
.-+|-|.+.+..+++-+|++ .=.++...+..|.+|-..+.|+++|...-...... . ..+..+|...+++.+-
T Consensus 54 ~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~----~---~~~q~~D~~~~~~~vt 126 (588)
T TIGR01504 54 SHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLH----K---EDFQAVDIAAIAKPVS 126 (588)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccC----C---CcccccCHHHHhhhhc
Confidence 45677877764346666654 33356667899999999999999998655433221 1 1234578889999987
Q ss_pred CCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 520 NGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 520 ~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
. ...+|.+++++.+.|++|+. ....||+.|+|..|-
T Consensus 127 k-----~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 127 K-----MAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred e-----EEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 6 78889999999888888875 234589999999874
No 189
>PRK07586 hypothetical protein; Validated
Probab=94.05 E-value=0.19 Score=55.33 Aligned_cols=108 Identities=11% Similarity=0.165 Sum_probs=75.9
Q ss_pred hhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHh
Q 044559 440 SVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+... +++.+|++ ---++.-.+..|.+|...+.|+++|.-.-...... ...+...|...+++.+
T Consensus 51 A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~~~~-------~~~~q~~d~~~~~~~v 122 (514)
T PRK07586 51 ATGAADGYARMA-GKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATYHRK-------YDAPLTSDIEALARPV 122 (514)
T ss_pred HHHHHHHHHHHH-CCCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchhccC-------CCcccccchhhhhccc
Confidence 345677777664 56666553 33345566888999999999999998754433221 1113346888888888
Q ss_pred cCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 519 HNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
-. +..+|++++++.+.+++|+. ....||+.|++..|-
T Consensus 123 tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv 162 (514)
T PRK07586 123 SG-----WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADV 162 (514)
T ss_pred cc-----eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 75 78899999998888877775 234699999999874
No 190
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=94.03 E-value=0.22 Score=56.06 Aligned_cols=118 Identities=10% Similarity=0.030 Sum_probs=80.9
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|.|.+.+. +++.+|++- --++...+..|.+|...++|+++|...-...... . .
T Consensus 70 i~~v~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~----~---~ 138 (612)
T PRK07789 70 VRHVLVRHEQ---GAGHAAEGYAQAT-GRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIG----T---D 138 (612)
T ss_pred ceEEEeccHH---HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccC----C---C
Confidence 4455444332 2446788888765 456665553 3355556889999999999999998754433221 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+...|...+++.+-. ...+|++++++...+++|+. ....||+.|+|..|
T Consensus 139 ~~q~~d~~~l~~~~tk-----~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 139 AFQEADIVGITMPITK-----HNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred cCcccchhhhhhccee-----EEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 1344688888888876 78889999998888877775 23469999999987
No 191
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=94.01 E-value=0.34 Score=44.81 Aligned_cols=110 Identities=19% Similarity=0.103 Sum_probs=64.4
Q ss_pred HHHHHHhHHhHhcC-c-cEEEEeCChhhHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccc-------cC-CCC
Q 044559 93 NAGYAADGYARSRG-V-GACVVTFTVGGLS-VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHT-------IG-LPD 161 (585)
Q Consensus 93 ~A~~~A~Gyar~tg-~-~v~~~tsGpG~~n-~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~-------~~-~~~ 161 (585)
.+.-+|.|.+.+.. + .+|+ .|=|... .+..+..|...++|+++|.-+.......+. .++. .. ...
T Consensus 52 ~~lp~AiGa~la~~~~~vv~i--~GDG~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~--~~~~~~~~~~~~~~~~~ 127 (172)
T cd02004 52 VGLGYAIAAALARPDKRVVLV--EGDGAFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLD--GQQLSYGLGLPVTTLLP 127 (172)
T ss_pred chHHHHHHHHHhCCCCeEEEE--EcchhhcCCHHHHHHHHHcCCCEEEEEEECcccccchh--hhhhhccCCCceeccCC
Confidence 35557778776654 3 4444 3444444 468888999999998888866543211110 0000 00 001
Q ss_pred hhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 162 FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 162 ~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
..|...+.+.+--...++.+++++.+. ++.+...+||+.|++..|
T Consensus 128 ~~d~~~la~a~G~~~~~v~~~~el~~a----l~~a~~~~~p~liev~i~ 172 (172)
T cd02004 128 DTRYDLVAEAFGGKGELVTTPEELKPA----LKRALASGKPALINVIID 172 (172)
T ss_pred CCCHHHHHHHCCCeEEEECCHHHHHHH----HHHHHHcCCCEEEEEEcC
Confidence 124456677665567788886665444 445555589999998754
No 192
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.93 E-value=0.22 Score=55.63 Aligned_cols=119 Identities=9% Similarity=0.023 Sum_probs=82.0
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|-|.+... +++.+|++ ---+....+..|.+|-+.+.|+++|...-...... . .
T Consensus 53 i~~i~~rhE~---~A~~mAdgyar~t-g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~----~---~ 121 (570)
T PRK06725 53 LKHILTRHEQ---AAIHAAEGYARAS-GKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIG----K---D 121 (570)
T ss_pred CcEEEecCHH---HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCccccc----C---C
Confidence 4455444332 2345788888764 45655554 33345556889999999999999998654433211 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-. ...+|.+++++...|++|+. ....||+.|+|..|-
T Consensus 122 ~~q~~d~~~l~~~itk-----~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 122 GFQEADVVGITVPVTK-----HNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred CCcccchhhhhhccce-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 1344688889998876 78899999999888888875 234699999999774
No 193
>PTZ00089 transketolase; Provisional
Probab=93.87 E-value=0.55 Score=53.22 Aligned_cols=117 Identities=15% Similarity=0.057 Sum_probs=77.9
Q ss_pred eEE-eCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCCh
Q 044559 84 NLI-GCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162 (585)
Q Consensus 84 ~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~ 162 (585)
|++ ...-|++++.+|.|.|.-.|.-.+++|..+=+.=+...|..+.+.+.||+++....... .+.+.. ++|.
T Consensus 404 rfi~~GIaEq~mv~~AaGlA~~~G~~P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~-~g~DG~------THq~ 476 (661)
T PTZ00089 404 RYIRFGVREHAMCAIMNGIAAHGGFIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIG-LGEDGP------THQP 476 (661)
T ss_pred CeeeeeecHHHHHHHHHHHHHcCCCeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCcee-cCCCCC------Cccc
Confidence 544 66789999999999999767633344566666668888999999999999995332222 233222 2345
Q ss_pred hHHHhhhcceeEEE-EEeCChhhHHHHHHHHHHHhhh-cCCcEEEEecCCC
Q 044559 163 SQELRCFQTVTCYQ-AVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNL 211 (585)
Q Consensus 163 ~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~-~~GPV~i~iP~dv 211 (585)
..++.+++.+.--. .+..+..++ ..+++.|.. ..||+||.+|..-
T Consensus 477 iedia~lR~iPn~~V~~PaD~~E~----~~~l~~al~~~~gP~~irl~R~~ 523 (661)
T PTZ00089 477 VETLALLRATPNLLVIRPADGTET----SGAYALALANAKTPTILCLSRQN 523 (661)
T ss_pred HHHHHHHhcCCCcEEEecCCHHHH----HHHHHHHHHcCCCCEEEEecCCC
Confidence 56788888875432 223344444 555556653 4799999999763
No 194
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=93.77 E-value=1.2 Score=42.46 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=71.3
Q ss_pred HHHHHhHHhHhcC-c-cEEEEeCChhhH-HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccc----------cC--
Q 044559 94 AGYAADGYARSRG-V-GACVVTFTVGGL-SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHT----------IG-- 158 (585)
Q Consensus 94 A~~~A~Gyar~tg-~-~v~~~tsGpG~~-n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~----------~~-- 158 (585)
+.-+|.|.+.+.. + .||++ |=|.. =.+..|..|...++|+++|.-+......-+. .|+. ..
T Consensus 62 ~lpaaiGa~la~p~~~vv~i~--GDG~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~--~q~~~~~~~~~~~~~~~~ 137 (202)
T cd02006 62 TVPAALGVAAADPDRQVVALS--GDYDFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQ--AQRAFDMDYQVNLAFENI 137 (202)
T ss_pred hhHHHHhHHhhCCCCeEEEEE--eChHhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHH--HHHHhcCccccccccccc
Confidence 4446777666653 4 44443 33333 2457888999999999999877553211110 0000 00
Q ss_pred -----CCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 159 -----LPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 159 -----~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
.....|..++.+.+-....++.+++++...+++|+.......+|+.|++..|-
T Consensus 138 ~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 138 NSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred cccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 00013556677777667889999999988888887654445799999998764
No 195
>PRK12753 transketolase; Reviewed
Probab=93.76 E-value=0.61 Score=52.83 Aligned_cols=117 Identities=15% Similarity=0.053 Sum_probs=80.3
Q ss_pred eEE-eCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCCh
Q 044559 84 NLI-GCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162 (585)
Q Consensus 84 ~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~ 162 (585)
|++ ...-|++++.+|.|.|.-.|.-.++.|..+=+.=+...|..+.+.+.||+++........ +.+..- +|.
T Consensus 403 r~i~~GIaEq~mv~~aaGlA~~~G~~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~-G~DG~T------Hq~ 475 (663)
T PRK12753 403 NYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGL-GEDGPT------HQP 475 (663)
T ss_pred CEEEeeecHHHHHHHHHHHHHhCCCeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCccc-CCCCcc------ccc
Confidence 544 677899999999999997787444556667666788888888899999999855443332 332222 345
Q ss_pred hHHHhhhcceeEEE-EEeCChhhHHHHHHHHHHHhhh-cCCcEEEEecCCC
Q 044559 163 SQELRCFQTVTCYQ-AVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNL 211 (585)
Q Consensus 163 ~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~-~~GPV~i~iP~dv 211 (585)
..++.+++.+.... ++..+..+ +..+++.|.. ..||+||.++..-
T Consensus 476 iedla~lR~iPn~~v~~PaD~~E----~~~~~~~al~~~~gP~~irl~R~~ 522 (663)
T PRK12753 476 VEQLASLRLTPNFSTWRPCDQVE----AAVAWKLAIERHNGPTALILSRQN 522 (663)
T ss_pred HHHHHHHhcCCCCEEEccCCHHH----HHHHHHHHHhcCCCCEEEEecCCC
Confidence 67788998886433 22333333 3556666665 4799999999753
No 196
>PRK12754 transketolase; Reviewed
Probab=93.75 E-value=1.2 Score=50.30 Aligned_cols=116 Identities=12% Similarity=0.022 Sum_probs=80.5
Q ss_pred e-EEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCCh
Q 044559 84 N-LIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162 (585)
Q Consensus 84 ~-~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~ 162 (585)
| +-...-|++++.+|.|.|.-.|.-.++.|..+=+.-+...|-.+-+.+.|++++........ +.+..- +|.
T Consensus 403 r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~-G~DG~T------Hq~ 475 (663)
T PRK12754 403 NYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGPT------HQP 475 (663)
T ss_pred CeEeeccchhhHHHHHhhHHhcCCCeEEEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc-CCCCCC------ccc
Confidence 5 44678999999999999998787455556667666788899888899999988865544432 332222 345
Q ss_pred hHHHhhhcceeEEE-EEeCChhhHHHHHHHHHHHhhhc-CCcEEEEecCC
Q 044559 163 SQELRCFQTVTCYQ-AVVNNLEDAHELIDTAVSTALKE-SKPVYISVACN 210 (585)
Q Consensus 163 ~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~-~GPV~i~iP~d 210 (585)
..++.+++.+.... ++..+..++ ..+++.|... .||+||.++..
T Consensus 476 iEdla~lR~iPn~~V~~PaD~~E~----~~~~~~a~~~~~gP~yirl~R~ 521 (663)
T PRK12754 476 VEQVASLRVTPNMSTWRPCDQVES----AVAWKYGVERQDGPTALILSRQ 521 (663)
T ss_pred HHHHHHHhcCCCcEEecCCCHHHH----HHHHHHHHhCCCCCEEEEeCCC
Confidence 67889999886533 333333333 5555666655 69999999975
No 197
>PRK08266 hypothetical protein; Provisional
Probab=93.72 E-value=0.67 Score=51.46 Aligned_cols=121 Identities=10% Similarity=0.087 Sum_probs=80.5
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
..+++....-.+ +.-+|.|.+... +++.+|++- --++...+..+..|...+.|+++|...=..+.+. .+.
T Consensus 43 ~i~~v~~~hE~~---A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~----~~~- 113 (542)
T PRK08266 43 RIRVIHTRHEQA---AGYMAFGYARST-GRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIG----KGR- 113 (542)
T ss_pred CCeEEeeccHHH---HHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhhcc----CCC-
Confidence 345555444332 334888888775 466666653 3355556889999999999999988643222111 111
Q ss_pred CCCCC-CChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 504 NVIKN-WNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 504 ~~~~~-~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
..+.. +|...+++.+-. +..++++++++...+++|+. ....||+.|||..|
T Consensus 114 ~~~~~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 114 GHLHEMPDQLATLRSFTK-----WAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred CcceecccHhhHHhhhcc-----eEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 01122 478888888876 78899999998888877775 23569999999987
No 198
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.62 E-value=0.54 Score=52.60 Aligned_cols=120 Identities=12% Similarity=0.087 Sum_probs=83.8
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
..+++....-.+- .-+|-|.+... +++.+|++-=| ++...+..+.+|...+.|+++|...-...... .
T Consensus 42 ~i~~i~~rhE~~A---~~mAdgyar~t-g~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~----~--- 110 (574)
T PRK06466 42 KVEHILVRHEQAA---THMADGYARAT-GKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIG----E--- 110 (574)
T ss_pred CceEEEeCcHHHH---HHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccC----C---
Confidence 3556655544333 34788887764 56777666444 45556889999999999999998755432211 1
Q ss_pred CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
..+..+|...+++.+-. ...+|.+++++...+++|+. ....||+.|+|..|-
T Consensus 111 ~~~q~~d~~~l~~~itk-----~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 111 DAFQETDMVGISRPIVK-----HSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred Ccccccchhhhhhccce-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 11344788888888876 78889999999888888875 234699999999883
No 199
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.61 E-value=0.31 Score=54.66 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=75.9
Q ss_pred hhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHh
Q 044559 440 SVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+..+|-|.+.+. +++.++++- --++...+..+.+|...+.|+++|...-..... .. ..+..+|...+++.+
T Consensus 50 A~~~Adgyar~t-g~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~----~~---~~~q~~d~~~l~~~~ 121 (586)
T PRK06276 50 AAHAADGYARAS-GKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLI----GN---DAFQEIDALGIFMPI 121 (586)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccc----CC---CCCccccHhhHHhhh
Confidence 446788887764 456666654 345555689999999999999999853332211 01 123447888899998
Q ss_pred cCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 519 HNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
-. ...++++++++...+++|+. ....||+.|+|..|
T Consensus 122 tk-----~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 122 TK-----HNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred cc-----eEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 76 78889998888888877765 23468999999976
No 200
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=93.56 E-value=0.26 Score=55.26 Aligned_cols=119 Identities=9% Similarity=0.050 Sum_probs=79.1
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|-|.+.+.. ++.+|++ .--++...+..+.+|.+.+.|+++|...=..... ..+
T Consensus 44 i~~i~~rhE~---~A~~~Adgyar~tg-~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~----~~~--- 112 (588)
T PRK07525 44 IRFIDVAHEQ---NAGHMADGYTRVTG-RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTI----GQG--- 112 (588)
T ss_pred CCEEEecCHH---HHHHHHHHHHHHhC-CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccC----CCC---
Confidence 4455444332 23467788777654 4555554 3446666789999999999999999842222111 111
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-. ...++++++++..+|++|+. ....||+.|||..|-
T Consensus 113 ~~q~~d~~~l~~~~tk-----~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 113 GFQEAEQMPMFEDMTK-----YQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred CCcccchhhhhhhhee-----EEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 1344678888888865 78889998888887777765 234699999999773
No 201
>PLN02790 transketolase
Probab=93.53 E-value=0.72 Score=52.23 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=77.2
Q ss_pred eEE-eCcchHHHHHHHhHHhHhc-Cc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCC
Q 044559 84 NLI-GCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160 (585)
Q Consensus 84 ~~i-~~~~E~~A~~~A~Gyar~t-g~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~ 160 (585)
|++ ...-|++++.+|.|.|+.. |. .++ .|..+=++-+..++..+...+.|++++....... .+.+..- +
T Consensus 393 Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~-~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~-~G~DG~T------H 464 (654)
T PLN02790 393 RNVRFGVREHGMGAICNGIALHSSGLIPYC-ATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIG-LGEDGPT------H 464 (654)
T ss_pred CeEEeeechHHHHHHHHHHHhcCCCcEEEE-EecHHHHHHHHHHHHHHHhcCCCeEEEEECCcee-ecCCCCC------c
Confidence 544 6678999999999999985 77 555 4565555556778888889999988886433222 2332222 3
Q ss_pred ChhHHHhhhcceeEEE-EEeCChhhHHHHHHHHHHHhhh-cCCcEEEEecCCC
Q 044559 161 DFSQELRCFQTVTCYQ-AVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNL 211 (585)
Q Consensus 161 ~~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~-~~GPV~i~iP~dv 211 (585)
|...++.+++.+.... ++..+..++ ..+++.|.. ..||++|.+|..-
T Consensus 465 q~iedla~lR~iPnl~V~~PaD~~E~----~~~l~~al~~~~gP~~irl~R~~ 513 (654)
T PLN02790 465 QPIEHLASLRAMPNILMLRPADGNET----AGAYKVAVTNRKRPTVLALSRQK 513 (654)
T ss_pred ccHHHHHHhcCCCCcEEEeCCCHHHH----HHHHHHHHHcCCCCEEEEecCCC
Confidence 4557789999886543 233344444 445555554 4699999999764
No 202
>PRK05858 hypothetical protein; Provisional
Probab=93.46 E-value=0.36 Score=53.55 Aligned_cols=119 Identities=7% Similarity=0.021 Sum_probs=80.4
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ .--++...++.+.+|...+.|+++|.-+-....+. .+.
T Consensus 43 i~~i~~rhE~~---A~~~AdGyar~t-g~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~~~~~----~~~-- 112 (542)
T PRK05858 43 IRLIDVRHEQT---AAFAAEAWAKLT-RVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWG----MGS-- 112 (542)
T ss_pred CCEEeeccHHH---HHHHHHHHHHhc-CCCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCcccCC----CCC--
Confidence 44555444332 346788888774 56666664 34466667899999999999999877433221110 111
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
+...|...+++.+-- ...++++++++.+.+++|+. ....||+.|+|..|-
T Consensus 113 -~q~~d~~~l~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 113 -LQEIDHVPFVAPVTK-----FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred -Ccccchhhhhhhhhc-----eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence 234677888888876 88899999998888887775 234689999999763
No 203
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.41 E-value=0.68 Score=51.59 Aligned_cols=118 Identities=13% Similarity=0.113 Sum_probs=80.1
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+... +++.++++-=| ++...+..+.+|...++|+++|...=...... . .
T Consensus 40 i~~i~~~hE~~---A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~~~~~----~---~ 108 (558)
T TIGR00118 40 IEHILVRHEQG---AAHAADGYARAS-GKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIG----S---D 108 (558)
T ss_pred ceEEEeCcHHH---HHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccC----C---C
Confidence 44555444332 335688888765 56666665433 44456889999999999999998743322211 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+...|...+++.+-. ...++++++++...+++|+. ....||+.|+|..|
T Consensus 109 ~~q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 109 AFQEADILGITMPITK-----HSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred CCcccChhhhhcCccc-----eeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 1334677888888776 78899999998888888775 22368999999977
No 204
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.41 E-value=0.35 Score=54.51 Aligned_cols=118 Identities=10% Similarity=0.008 Sum_probs=80.6
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|-|.+... +++.+|++- --++...++.|.+|...+.|+++|..+-....+. . .
T Consensus 61 i~~i~~rhE~---~Aa~aA~gyar~t-gk~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~----~---~ 129 (616)
T PRK07418 61 LKHILVRHEQ---GAAHAADGYARAT-GKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIG----T---D 129 (616)
T ss_pred ceEEEeccHH---HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccC----C---C
Confidence 4455544332 2345777777664 567776653 3356667899999999999999998754433221 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+...|...+++.+-- ...+|++++++..++++|+. ....||+.|+|..|
T Consensus 130 ~~Qe~d~~~~~~~vtk-----~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 130 AFQETDIFGITLPIVK-----HSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred CcccccHHHHhhhcce-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 1234677788887765 67889999998888888775 23459999999875
No 205
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=93.39 E-value=0.28 Score=54.87 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=77.3
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHh
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|.|.+.+. +++.+|++.=| +....+..|.+|.+.+.|+++|...-..+... . ..+...|...+++.+
T Consensus 65 A~~~A~gyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~----~---~~~q~~d~~~l~~~~ 136 (571)
T PRK07710 65 AIHAAEGYARIS-GKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIG----S---DAFQEADIMGITMPV 136 (571)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCccccC----C---CCccccchhhhhhcc
Confidence 446788887764 56777776433 34456889999999999999998765544321 1 123446888888887
Q ss_pred cCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 519 HNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
-. +..+|.+++++...+++|+. ....||+.|+|..|
T Consensus 137 tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 137 TK-----HNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred cc-----eEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 65 78899999998888887765 23469999999986
No 206
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.31 E-value=0.31 Score=54.42 Aligned_cols=119 Identities=13% Similarity=0.075 Sum_probs=80.7
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++-+|++- --++.-.+..+.+|...+.|+++|...-...... . .
T Consensus 43 i~~v~~rhE~~---A~~mAdgyar~t-g~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~----~---~ 111 (572)
T PRK08979 43 IEHILVRHEQA---AVHMADGYARAT-GKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIG----N---D 111 (572)
T ss_pred CeEEEeCcHHH---HHHHHHHHHHHh-CCCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccccC----C---C
Confidence 44554443322 346778887764 456665553 3345557889999999999999988644322110 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-. ...+|++++++...+++|+. ....||+.|+|..|-
T Consensus 112 ~~q~~d~~~~~~~itk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 112 AFQECDMIGISRPVVK-----HSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred CCcccchhHHhhhcee-----EEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 2344788888998876 78899999998888888775 234599999999773
No 207
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=93.29 E-value=0.2 Score=45.74 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=67.0
Q ss_pred chhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHh
Q 044559 439 WSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 439 ~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
.+..+|-|++.+. +++++++.--++...+..|.++...+.|+++|+-+........ .......+|...+.+.
T Consensus 52 ~A~~~A~g~~r~~--~~v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~~~~~-----~~~~~~~~~~~~~~~~- 123 (160)
T cd07034 52 AAAEAAIGASAAG--ARAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGL-----PKPDQSDLMAARYGGH- 123 (160)
T ss_pred HHHHHHHHHHhhC--CcEEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCCCCCC-----CCcCcHHHHHHHhCCC-
Confidence 3556777777653 3355555555667788999999999999999998766554311 0001112344444433
Q ss_pred cCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEE
Q 044559 519 HNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEV 556 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV 556 (585)
.. ..+++++++++.+.+++|+. ....+|++|-+
T Consensus 124 ~~-----~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 124 PW-----PVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CE-----EEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 23 67789999998888887775 22347888754
No 208
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=93.27 E-value=0.43 Score=48.56 Aligned_cols=106 Identities=25% Similarity=0.164 Sum_probs=66.5
Q ss_pred HHhHh---cCc-cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcce
Q 044559 100 GYARS---RGV-GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV 172 (585)
Q Consensus 100 Gyar~---tg~-~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~ 172 (585)
|+|++ .|. .|+++..|=|+++ ..-+|--|...+.|||+|+-+..... ...... ++.. .........-.+
T Consensus 112 G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~ai-st~~~~-~~~~--~~~~~~a~~~gi 187 (300)
T PF00676_consen 112 GVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAI-STPTEE-QTAS--PDIADRAKGYGI 187 (300)
T ss_dssp HHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEET-TEEHHH-HCSS--STSGGGGGGTTS
T ss_pred chhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCccc-ccCccc-cccc--cchhhhhhccCC
Confidence 55543 455 8888888887765 55677778889999999987643321 110000 0000 111111122234
Q ss_pred eEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecC
Q 044559 173 TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVAC 209 (585)
Q Consensus 173 tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~ 209 (585)
.-....=+++..+.+.+.+|++.++.++||+.|++=.
T Consensus 188 p~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~t 224 (300)
T PF00676_consen 188 PGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVT 224 (300)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE
T ss_pred cEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 4556666789999999999999999999999999864
No 209
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.25 E-value=0.94 Score=50.85 Aligned_cols=120 Identities=6% Similarity=0.013 Sum_probs=83.7
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccch-hcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGS-FQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGs-f~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+..+++.+|++-=|- +.-.+..+.+|.+.+.|+++|..+-...... .+
T Consensus 43 i~~v~~rhE~~---A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~----~~--- 112 (591)
T PRK11269 43 IRHILARHVEG---ASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLH----KE--- 112 (591)
T ss_pred CcEEeeCCHHH---HHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccC----CC---
Confidence 45555544332 4467888877652567777775553 3335789999999999999998765543221 11
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+..+|...+++.+-. ...+|.+++++..++++|+. ....||+.|+|..|-
T Consensus 113 ~~q~~d~~~l~~~itk-----~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 113 DFQAVDIESIAKPVTK-----WAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred cccccChhhHhhccee-----EEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 1344788888888765 78889999998888888765 234589999999773
No 210
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=93.24 E-value=3.5 Score=37.47 Aligned_cols=140 Identities=15% Similarity=-0.021 Sum_probs=74.8
Q ss_pred CCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHH-HHHHHHHhhhc-CCcEE
Q 044559 59 ATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS-VLNAIAGAYSE-NLPLI 136 (585)
Q Consensus 59 V~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n-~~~~l~~A~~~-~~Pll 136 (585)
=+.|++=.|.....++... ..+ -+++..-.=..+.-+|.|.+.+..+-|+++ .|=|... .+..+..+... +.|++
T Consensus 14 d~~vv~d~G~~~~~~~~~~-~~~-~~~~~~gsmG~~lp~AiGa~~a~~~~Vv~i-~GDG~f~m~~~el~t~~~~~~~~i~ 90 (157)
T cd02001 14 DTPIVSTTGYASRELYDVQ-DRD-GHFYMLGSMGLAGSIGLGLALGLSRKVIVV-DGDGSLLMNPGVLLTAGEFTPLNLI 90 (157)
T ss_pred CCEEEeCCCHhHHHHHHhh-cCC-CCEEeecchhhHHHHHHHHHhcCCCcEEEE-ECchHHHhcccHHHHHHHhcCCCEE
Confidence 3345555565544443222 222 355532222223336677666655533333 3444442 34566666665 69999
Q ss_pred EEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 137 CIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 137 vI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
+|.-+......-.++ +... ...|...+.+.+--...++.+++++.+.+++|+ ...||+.|++..+
T Consensus 91 ~vV~nN~~~g~~~~~---~~~~--~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~----~~~gp~vi~v~i~ 155 (157)
T cd02001 91 LVVLDNRAYGSTGGQ---PTPS--SNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLL----ATTGPTLLHAPIA 155 (157)
T ss_pred EEEEeCccccccCCc---CCCC--CCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 998765543211110 1111 123455666666555677888777766666655 4579999998864
No 211
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=93.24 E-value=2.6 Score=39.14 Aligned_cols=122 Identities=17% Similarity=0.111 Sum_probs=70.7
Q ss_pred CeEEeCcchH---HHHHHHhHHhHhcCccEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCcccccc----
Q 044559 83 LNLIGCCNEL---NAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHH---- 155 (585)
Q Consensus 83 i~~i~~~~E~---~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~---- 155 (585)
-+++..+.=. .+.-+|.|.+.+..+-|++++.--++.-.+..|..|...++|++++.-+......-+. .++
T Consensus 42 ~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~--~~~~~~~ 119 (175)
T cd02009 42 VRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSL--LPQASFE 119 (175)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhHHHHHhccccCCCeEEEEEECCCCchhee--ccCCccc
Confidence 3555444322 3555778877766553443333333333478899999999999998877654211110 000
Q ss_pred -----ccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 156 -----TIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 156 -----~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
........|..++.+.+--...++++++++...+++|+ ...+|+.|++..|
T Consensus 120 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~----~~~~p~lIev~v~ 175 (175)
T cd02009 120 DEFERLFGTPQGLDFEHLAKAYGLEYRRVSSLDELEQALESAL----AQDGPHVIEVKTD 175 (175)
T ss_pred chhhhhhcCCCCCCHHHHHHHcCCCeeeCCCHHHHHHHHHHHH----hCCCCEEEEEeCC
Confidence 00000012445666666445678888887777766665 3579999999765
No 212
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.20 E-value=0.36 Score=53.96 Aligned_cols=119 Identities=10% Similarity=0.023 Sum_probs=81.5
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+... +++.+|++- --++.-.+..+.+|-..+.|+++|...-...... . .
T Consensus 44 i~~i~~rhE~~---A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~----~---~ 112 (572)
T PRK06456 44 LRHVLMRHEQA---AAHAADGYARAS-GVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMG----K---M 112 (572)
T ss_pred CeEEEeCcHHH---HHHHHHHHHHhh-CCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCccccC----C---C
Confidence 34554443332 446788887764 567777743 3344446889999999999999998654432211 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-. ...++++++++...+++|+. ....||+.|++..|-
T Consensus 113 ~~q~~d~~~i~~~~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 113 AFQEADAMGVFENVTK-----YVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred Cccccchhhhhhccce-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 1344688888888876 78889999998888888765 234699999998764
No 213
>PRK12474 hypothetical protein; Provisional
Probab=93.19 E-value=0.39 Score=52.94 Aligned_cols=107 Identities=9% Similarity=0.150 Sum_probs=74.9
Q ss_pred hHHHHhhhhcCCCCcEEEE-EccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhc
Q 044559 441 VGATLGYAQSVPEKRVIAC-IGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH 519 (585)
Q Consensus 441 lpaAiGaalA~p~r~vv~v-~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 519 (585)
.-+|-|.+.+. +++.+|+ +.--++.-.+..|.+|...+.|+++|......... . ...+...|...+++.+-
T Consensus 56 ~~mAdgYaR~t-g~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~~-----~--~~~~q~~d~~~~~~~vt 127 (518)
T PRK12474 56 TGAADGYGRIA-GKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHL-----Q--YDAPLTSDIDGFARPVS 127 (518)
T ss_pred HHHHHHHHHHh-CCCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchhhc-----C--CCCccccCHHHhhhccc
Confidence 35677777664 4565544 43445666788899999999999999875432211 0 11123358888888876
Q ss_pred CCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 520 NGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 520 ~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
. +..+|++++++..+|++|+. ....||+.|+|..|-
T Consensus 128 k-----~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 128 R-----WVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred c-----eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 5 78889999999988888874 335699999999884
No 214
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.17 E-value=0.33 Score=54.26 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=74.8
Q ss_pred hHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhc
Q 044559 441 VGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH 519 (585)
Q Consensus 441 lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 519 (585)
.-+|-|.+.+. +++.++++ .--++.-.+..+.+|-..+.|+++|...-...... . ..+...|...+++.+-
T Consensus 55 ~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~~~~----~---~~~q~~d~~~l~~~vt 126 (574)
T PRK06882 55 VHMADGYARST-GKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIG----T---DAFQECDMLGISRPVV 126 (574)
T ss_pred HHHHHHHHHhh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccC----C---Ccccccchhhhhhccc
Confidence 36777777664 45666554 33355556889999999999999988644432211 1 1134478888888877
Q ss_pred CCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 520 NGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 520 ~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
. ...+|++++++...+++|+. ....||+.|+|..|
T Consensus 127 k-----~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 127 K-----HSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred c-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 6 78899999988877777765 23469999999987
No 215
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=93.12 E-value=0.58 Score=48.50 Aligned_cols=112 Identities=16% Similarity=0.067 Sum_probs=68.2
Q ss_pred HHHHHHhHHhHhcCccEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhh
Q 044559 93 NAGYAADGYARSRGVGACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 169 (585)
Q Consensus 93 ~A~~~A~Gyar~tg~~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~ 169 (585)
.|..+|.|..+.....++++..|=|+.+ +.-++..|...++|+|+|.-+.... ..... .+... ..+..++.
T Consensus 130 ~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~-~~~~~--~~~~~---~~d~~~~a 203 (341)
T TIGR03181 130 HAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWA-ISVPR--SKQTA---APTLAQKA 203 (341)
T ss_pred HHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCc-cccch--hhhhC---CcCHHHHH
Confidence 3444555433332236666777877776 2356777889999999998765422 11100 00011 12334555
Q ss_pred cceeEEEEEeCChh--hHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 170 QTVTCYQAVVNNLE--DAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 170 ~~~tk~~~~v~~~~--~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
+.+--...+|+..+ .+.+.+.+|++.|....||+.|++-..
T Consensus 204 ~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~ 246 (341)
T TIGR03181 204 IAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTY 246 (341)
T ss_pred hhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEee
Confidence 55544455666554 457888999999988889999999654
No 216
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=93.07 E-value=3.3 Score=38.71 Aligned_cols=112 Identities=12% Similarity=-0.057 Sum_probs=63.9
Q ss_pred HHHHhHHhHhcC-ccEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccc---cCCCChhHHHhhhc
Q 044559 95 GYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHT---IGLPDFSQELRCFQ 170 (585)
Q Consensus 95 ~~~A~Gyar~tg-~~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~---~~~~~~~dq~~~~~ 170 (585)
.-+|.|.+.++. +-|++++.--++.-.++.+..|...++|+++|.-+.......+. .|.. .......|...+.+
T Consensus 56 l~~aiGaala~~~~~vv~i~GDG~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~--~~~~~~~~~~~~~~d~~~ia~ 133 (183)
T cd02005 56 VPAALGAALAAPDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINNDGYTIERA--IHGPEASYNDIANWNYTKLPE 133 (183)
T ss_pred HHHHHHHHHhCCCCeEEEEECCchhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEE--eccCCcCcccCCCCCHHHHHH
Confidence 345667666654 43333333333333456788888999999999877654321110 0000 00001124455666
Q ss_pred cee----EEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 171 TVT----CYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 171 ~~t----k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
.+- -...++.+++++.+.+++|++ ..+||+.|++..|-
T Consensus 134 a~G~~~~~~~~~v~~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 134 VFGGGGGGLSFRVKTEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred HhCCCccccEEEecCHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 553 346778888877666666664 25799999998763
No 217
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=93.04 E-value=0.72 Score=42.97 Aligned_cols=118 Identities=20% Similarity=0.194 Sum_probs=68.5
Q ss_pred eEE-eCcchHHHHHHHhHHhHhcC-ccEEEEeCChhhH----HHHHHHH-HhhhcCCcEEEEeCCCCCcccCCccccccc
Q 044559 84 NLI-GCCNELNAGYAADGYARSRG-VGACVVTFTVGGL----SVLNAIA-GAYSENLPLICIVGGPNSNDYGTNRILHHT 156 (585)
Q Consensus 84 ~~i-~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~----n~~~~l~-~A~~~~~PllvI~g~~~~~~~~~~~~~~~~ 156 (585)
|++ ....|++.+.+|.|+|...+ +-++..+.++=+. =....+. .....+.|+.+++.. +... +.+..-||
T Consensus 49 r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~-g~~~-~~~G~tH~- 125 (178)
T PF02779_consen 49 RFINTGIAEQNMVGMAAGLALAGGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRA-GLGY-GGDGGTHH- 125 (178)
T ss_dssp TEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEE-SGGG-STTGTTTS-
T ss_pred eEEecCcchhhccceeeeeeecccccceeEeeccccccccchhhhhhhhhhhhcccceecceeec-Cccc-cccccccc-
Confidence 555 56799999999999998875 6555455555444 2334554 566678887744432 2221 22212333
Q ss_pred cCCCChhHHHhhhcceeEEEE-EeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 157 IGLPDFSQELRCFQTVTCYQA-VVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 157 ~~~~~~~dq~~~~~~~tk~~~-~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
..+...+++.+..+.. ...++.++..+++.|++. ..++||||..|...
T Consensus 126 -----s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~~r~~ 174 (178)
T PF02779_consen 126 -----SIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIREPRGL 174 (178)
T ss_dssp -----SSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEEESSE
T ss_pred -----ccccccccccccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEeeHHh
Confidence 2345778887755443 344566666666655542 14799999999765
No 218
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.00 E-value=0.34 Score=54.05 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=74.7
Q ss_pred hhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHh
Q 044559 440 SVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+.+. +++.++++- --+++..+..|.+|...+.|+++|...-....+. . ..+...|...+++.+
T Consensus 57 A~~~Adgyar~t-g~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~----~---~~~q~~d~~~~~~~i 128 (561)
T PRK06048 57 AAHAADGYARAT-GKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIG----N---DAFQEADITGITMPI 128 (561)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCccccC----C---CCccccchhhhccCc
Confidence 456788887764 466666654 3355556899999999999999987533222110 1 123446788888887
Q ss_pred cCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 519 HNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
-. ...+|++++++...+++|+. ....||+.|+|..|
T Consensus 129 tk-----~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 129 TK-----HNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred ce-----EEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 65 78889999998888877765 23469999999876
No 219
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.78 E-value=0.43 Score=53.34 Aligned_cols=119 Identities=8% Similarity=-0.006 Sum_probs=78.4
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++. --++...++.+.+|...++|+++|...-...... ..
T Consensus 39 i~~v~~rhE~~---A~~~Adgyar~t-gk~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~~~~~-------~~ 107 (575)
T TIGR02720 39 IHYIQVRHEEV---GALAAAADAKLT-GKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMN-------MD 107 (575)
T ss_pred CcEEEeccHHH---HHHHHHHHHHhh-CCceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccCC-------CC
Confidence 44555444322 335677777654 456666543 4456667889999999999999998754433321 11
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.+..+|-..+++.+-. ...+|.+++++...+++|+. ....||+.|+|..|-
T Consensus 108 ~~q~id~~~~~~~vtk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 108 TFQEMNENPIYADVAV-----YNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred Ccceechhhhhhhcce-----EEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 1344677788888875 67888888777666655554 236799999999873
No 220
>PRK07064 hypothetical protein; Provisional
Probab=92.58 E-value=0.66 Score=51.49 Aligned_cols=108 Identities=12% Similarity=0.040 Sum_probs=73.5
Q ss_pred hHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCC-CCChHHHHHHh
Q 044559 441 VGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIK-NWNYTGLVDAI 518 (585)
Q Consensus 441 lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~-~~d~~~la~a~ 518 (585)
.-+|.|.+.+. +++.++++- --++.-.+..+.+|-..+.|+++|..+=....+. .+. ..+. .+|...+++.+
T Consensus 54 ~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~~~----~~~-~~~~~~~d~~~~~~~~ 127 (544)
T PRK07064 54 VNMADAHARVS-GGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLD----QDL-GYIHEAPDQLTMLRAV 127 (544)
T ss_pred HHHHHHHHHhc-CCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCccccc----CCC-cccccccCHHHHhhhh
Confidence 35788887764 455555543 3344556889999999999999998753322110 010 0011 25788888888
Q ss_pred cCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 519 HNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
-- ...++++++++..++++|+. ....||+.|+|..|
T Consensus 128 tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 128 SK-----AAFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred cc-----eEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 75 78899999998877777765 23479999999976
No 221
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=92.57 E-value=0.14 Score=46.83 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCC-CCccc
Q 044559 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP-SAKGL 292 (585)
Q Consensus 242 v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~-~gkg~ 292 (585)
++.++.+|.+||||++++|..+.+....++........++|++.|. ..++.
T Consensus 24 ~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~ 75 (167)
T PF02552_consen 24 PEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGM 75 (167)
T ss_dssp SHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCH
T ss_pred HHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccc
Confidence 4678999999999999999999875555666777778999999987 34443
No 222
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=92.52 E-value=0.45 Score=53.23 Aligned_cols=107 Identities=7% Similarity=0.027 Sum_probs=73.7
Q ss_pred hHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhc
Q 044559 441 VGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH 519 (585)
Q Consensus 441 lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 519 (585)
.-+|-|.+... +++.+|++ .--++...+..|.+|...+.|+++|...=..... .. ..+..+|...+++.+-
T Consensus 52 ~~~Adgyar~t-g~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~g~~~~~~~----~~---~~~Q~~d~~~l~~~vt 123 (579)
T TIGR03457 52 GHMADGFARVT-GRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTI----GL---GGFQEADQLPMFQEFT 123 (579)
T ss_pred HHHHHHHHHHh-CCCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEeCCCccccC----CC---CCCcccchhhhhhcce
Confidence 35677777654 45666655 3446666789999999999999998643222211 11 1134468888888887
Q ss_pred CCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 520 NGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 520 ~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
. ...+|++++++...+++|+. ....||+.||+..|-
T Consensus 124 k-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 124 K-----YQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred e-----EEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 6 78889998888777777764 224599999999774
No 223
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=92.46 E-value=0.59 Score=44.70 Aligned_cols=146 Identities=12% Similarity=-0.036 Sum_probs=79.3
Q ss_pred EEEecCCCChHHHHHhhhcCCCCeEEeCcc---hHHHHHHHhHHhHhcC-c-cEEEEeCChhhHHHHHHHHHhhhcCCcE
Q 044559 61 DVFSVPGDFNLTLLDHLIAEPGLNLIGCCN---ELNAGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPL 135 (585)
Q Consensus 61 ~vFg~PG~~~~~l~~al~~~~~i~~i~~~~---E~~A~~~A~Gyar~tg-~-~v~~~tsGpG~~n~~~~l~~A~~~~~Pl 135 (585)
.++.=-|.+...+...+.-...-+++.... =..+.-+|.|.+.+.. + .++++-=| ++.-....|..|...++|+
T Consensus 17 ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv 95 (205)
T cd02003 17 VVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDG-SYLMLHSEIVTAVQEGLKI 95 (205)
T ss_pred EEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccc-hhhccHHHHHHHHHcCCCC
Confidence 344444555555555543222245554322 1223446677665543 4 44443222 3333456788899999999
Q ss_pred EEEeCCCCCcccCCc-------cccccccC-----------CCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhh
Q 044559 136 ICIVGGPNSNDYGTN-------RILHHTIG-----------LPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTAL 197 (585)
Q Consensus 136 lvI~g~~~~~~~~~~-------~~~~~~~~-----------~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~ 197 (585)
++|.-+......-+. +.....+. .....|...+.+.+--...++.+++++.+.+++|+
T Consensus 96 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~---- 171 (205)
T cd02003 96 IIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAK---- 171 (205)
T ss_pred EEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHH----
Confidence 988877554311000 00000000 00113556677777555778888887766666664
Q ss_pred hcCCcEEEEecCCC
Q 044559 198 KESKPVYISVACNL 211 (585)
Q Consensus 198 ~~~GPV~i~iP~dv 211 (585)
..+||+.|++..|-
T Consensus 172 ~~~gp~lIeV~v~~ 185 (205)
T cd02003 172 ASDRTTVIVIKTDP 185 (205)
T ss_pred hCCCCEEEEEEeec
Confidence 45899999999764
No 224
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.46 E-value=0.4 Score=53.52 Aligned_cols=119 Identities=12% Similarity=0.117 Sum_probs=80.8
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|-|.+... +++-+|++-=| ++...+..|.+|...+.|+++|.-.-....+. .+
T Consensus 49 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~----~~--- 117 (566)
T PRK07282 49 IRHILARHEQ---GALHEAEGYAKST-GKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIG----KD--- 117 (566)
T ss_pred ceEEEecCHH---HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccCC----CC---
Confidence 4555544432 2446777777664 45655555322 45556889999999999999998765544331 11
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-. ...++++++++.+++++|+. ....||+.|+|..|-
T Consensus 118 ~~q~~d~~~~~~~itk-----~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 118 AFQEADIVGITMPITK-----YNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred CccccChhchhcCCCc-----eeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 1234677788888776 78889999988888877775 234599999999874
No 225
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.45 E-value=0.45 Score=52.79 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=72.6
Q ss_pred HHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcC
Q 044559 442 GATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHN 520 (585)
Q Consensus 442 paAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~ 520 (585)
-+|-|.+... +++.+|++. --++.-.+..+.+|...+.|+++|...-...... . ..+..+|...+++.+-.
T Consensus 50 ~~Adgyar~t-g~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~~~----~---~~~q~~d~~~~~~~~tk 121 (539)
T TIGR02418 50 FMAQAVGRIT-GKPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLL----K---LTHQSMDNVALFRPITK 121 (539)
T ss_pred HHHHHHHHHh-CCceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCcccccc----c---Ccccccchhhhhhccee
Confidence 4777777664 455555553 3355556889999999999999998753322211 1 11244677788888765
Q ss_pred CCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 521 GEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 521 ~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
...++++++++...+++|+. ....||+.|++..|
T Consensus 122 -----~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 122 -----YSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred -----eeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 78889999998777777764 23468999999988
No 226
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=92.44 E-value=0.47 Score=52.76 Aligned_cols=119 Identities=14% Similarity=-0.012 Sum_probs=79.8
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++-=| +..-.+..+.+|-..+.|+++|...-....+. .+.
T Consensus 40 i~~v~~~hE~~---A~~mAdgyar~t-gkpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~~~~----~~~-- 109 (549)
T PRK06457 40 VKYVQVRHEEG---AALAASVEAKIT-GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIG----HDY-- 109 (549)
T ss_pred CeEEEeCcHHH---HHHHHHHHHHHh-CCCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCccccC----CCc--
Confidence 44554444332 335777877764 56777765444 55556889999999999999998754322110 111
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
+...|...+++.+-. ...+|++++++..++++|+. ....||+.|+|..|-
T Consensus 110 -~q~~d~~~l~~~vtk-----~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv 161 (549)
T PRK06457 110 -FQEVNLTKLFDDVAV-----FNQILINPENAEYIIRRAIREAISKRGVAHINLPVDI 161 (549)
T ss_pred -ccccchhhhhcccee-----EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhH
Confidence 234677888777765 78889999998888777765 224699999999773
No 227
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.42 E-value=0.57 Score=52.44 Aligned_cols=118 Identities=11% Similarity=0.126 Sum_probs=79.3
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcc-cHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQV-TAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~-~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|-|.+.+. +++.+|++-=|-... .+..|.+|-+.++||++|...=..... . ..
T Consensus 50 i~~v~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~-----~--~~ 118 (578)
T PRK06112 50 IRQIAYRTEN---AGGAMADGYARVS-GKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQT-----D--RN 118 (578)
T ss_pred CcEEEeccHH---HHHHHHHHHHHHh-CCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccC-----C--CC
Confidence 3454444332 2445777888764 577777774443332 378899999999999999864332211 0 11
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+..+|-..+++.+-. ...++.+++++...+++|+. ....||+.|+|..|
T Consensus 119 ~~Q~~d~~~l~~~vtk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 119 AFQELDHIALFQSCTK-----WVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred CccccChhhhhccccc-----eEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 2344677888888876 78889998888877777764 23458999999987
No 228
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=92.38 E-value=0.91 Score=42.27 Aligned_cols=111 Identities=11% Similarity=0.038 Sum_probs=63.5
Q ss_pred HHHhHHhHhcC-c-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCcc---ccccccCC-CChhHHHhhh
Q 044559 96 YAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNR---ILHHTIGL-PDFSQELRCF 169 (585)
Q Consensus 96 ~~A~Gyar~tg-~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~---~~~~~~~~-~~~~dq~~~~ 169 (585)
-+|.|.+.++. + .++++-=| ++.=....|..|...++|+++|.-.......-+.. ...+..+. ....|...+.
T Consensus 55 p~aiGa~la~~~~~vv~i~GDG-~f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a 133 (177)
T cd02010 55 PGAIGAKLVYPDRKVVAVSGDG-GFMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYA 133 (177)
T ss_pred HHHHHHHHhCCCCcEEEEEcch-HHHhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHH
Confidence 36677666654 3 44444332 23223467888999999999997665432111100 00000110 0112445566
Q ss_pred cceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 170 QTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 170 ~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
+.+--...++.+++++...+++|+ ..+||+.|+++.|-
T Consensus 134 ~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 171 (177)
T cd02010 134 ESFGAKGYRIESADDLLPVLERAL----AADGVHVIDCPVDY 171 (177)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 666556678888887766666654 45899999999763
No 229
>PRK08617 acetolactate synthase; Reviewed
Probab=92.38 E-value=0.5 Score=52.57 Aligned_cols=119 Identities=11% Similarity=0.039 Sum_probs=80.6
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++.=| ++.-.+..+.+|...+.|+++|...-....+.+ +
T Consensus 43 i~~i~~~hE~~---A~~~A~gyar~t-g~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~~~----~--- 111 (552)
T PRK08617 43 PELIVTRHEQN---AAFMAAAIGRLT-GKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLK----R--- 111 (552)
T ss_pred CCEEEeccHHH---HHHHHHhHhhhc-CCCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCcccccCC----C---
Confidence 44554443322 235677777664 56777776444 444468899999999999999987544322211 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+..+|-..+++.+-. +..++++++++...+++|+. ....||+.|||..|-
T Consensus 112 ~~q~~d~~~l~~~~tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 112 THQSMDNVALFRPITK-----YSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred Cccccchhhhhhhhcc-----eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 1244677888888876 88999999998888877775 234589999999773
No 230
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=92.35 E-value=0.4 Score=53.25 Aligned_cols=108 Identities=16% Similarity=0.114 Sum_probs=76.0
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHh
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|.|.+.+. +++.+|++-=| ++...+..+.+|.+.+.|+++|...-...... .+ .+..+|...+++.+
T Consensus 50 A~~~Adgyar~s-g~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~----~~---~~q~~d~~~~~~~~ 121 (548)
T PRK08978 50 AAMAAIGYARAT-GKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIG----TD---AFQEIDVLGLSLAC 121 (548)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccC----CC---CCcccchhccccCc
Confidence 346788888765 56777776544 44446889999999999999998654433221 11 12345777777777
Q ss_pred cCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 519 HNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
-. ...+|++++++...+++|+. ....||+.|||..|-
T Consensus 122 tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 122 TK-----HSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred ee-----eEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 55 78889999988888887765 224599999999874
No 231
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=92.35 E-value=5.8 Score=42.87 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=82.3
Q ss_pred CcHHHHHHHHHHHcCCC--EEEecCC-----CC----hHHHHHhhhcCCCCeEE-eCcchHHHHHHHhHHhHhcCccEEE
Q 044559 44 STLGRHLARRLVQIGAT--DVFSVPG-----DF----NLTLLDHLIAEPGLNLI-GCCNELNAGYAADGYARSRGVGACV 111 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~--~vFg~PG-----~~----~~~l~~al~~~~~i~~i-~~~~E~~A~~~A~Gyar~tg~~v~~ 111 (585)
++..+++.+.|.+..-+ .+|.+-. .. ...|.+.+. .=|++ ....|++++.+|.|.|....+.++.
T Consensus 142 ~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fg---p~R~id~gIaEq~~vg~AaGlA~~G~rPiv~ 218 (464)
T PRK11892 142 MTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFG---ARRVIDTPITEHGFAGIGVGAAFAGLKPIVE 218 (464)
T ss_pred hHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhC---ccceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 46777777777666432 3443321 11 234555552 12555 4569999999999999964446553
Q ss_pred EeCChhhHHHHHHHHH-hh--------hcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEE-EeCC
Q 044559 112 VTFTVGGLSVLNAIAG-AY--------SENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQA-VVNN 181 (585)
Q Consensus 112 ~tsGpG~~n~~~~l~~-A~--------~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~-~v~~ 181 (585)
..+.--+..++.-|.+ +. +.+.||++...+-+... .+ .||. .+...+++.+..... ...+
T Consensus 219 ~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G--~hhs------~~d~a~~~~iPgl~V~~P~d 288 (464)
T PRK11892 219 FMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VA--AQHS------QDYAAWYSHIPGLKVVAPYS 288 (464)
T ss_pred EehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CC--Cccc------cCHHHHHhhCCCCEEEEeCC
Confidence 3222122334443432 22 67899999865433321 11 1442 234678888754332 3456
Q ss_pred hhhHHHHHHHHHHHhhhcCCcEEEE
Q 044559 182 LEDAHELIDTAVSTALKESKPVYIS 206 (585)
Q Consensus 182 ~~~~~~~l~~A~~~a~~~~GPV~i~ 206 (585)
+.++..+++.|+ ..++||||-
T Consensus 289 ~~d~~~ll~~ai----~~~~Pv~il 309 (464)
T PRK11892 289 AADAKGLLKAAI----RDPNPVIFL 309 (464)
T ss_pred HHHHHHHHHHHh----hCCCcEEEE
Confidence 677767766665 447999984
No 232
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.34 E-value=0.46 Score=53.03 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=74.6
Q ss_pred hhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHh
Q 044559 440 SVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+... +++.++++ ---+++..+..+.+|...+.|+++|...=..... .. ..+..+|...+++.+
T Consensus 53 A~~~Adgyar~t-g~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~----~~---~~~q~~d~~~~~~~~ 124 (563)
T PRK08527 53 AVHAADGYARAS-GKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLI----GT---DAFQEIDAVGISRPC 124 (563)
T ss_pred HHHHHHHHHhhh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc----CC---CCCcccchhhhhhcc
Confidence 446788877765 45555544 3445555688999999999999988753221111 01 113446777888887
Q ss_pred cCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 519 HNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
-- ...+|++++++..+|++|+. ....||+.|+|..|-
T Consensus 125 tk-----~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv 164 (563)
T PRK08527 125 VK-----HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV 164 (563)
T ss_pred cc-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 65 78889999999998888876 234589999999773
No 233
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.26 E-value=1.6 Score=48.68 Aligned_cols=119 Identities=12% Similarity=0.017 Sum_probs=80.0
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +.-+|-|.+.+. +++.+|++.=| ++.-.+..|.+|...+.|+++|...-...... .+
T Consensus 51 ~i~~i~~~hE~~---A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~----~~-- 120 (564)
T PRK08155 51 QIRHILARHEQG---AGFIAQGMARTT-GKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIG----TD-- 120 (564)
T ss_pred CceEEEeccHHH---HHHHHHHHHHHc-CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCccccc----CC--
Confidence 345555444322 346788888764 56777665433 44446889999999999999998644432211 11
Q ss_pred CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+..+|...+++.+-. ...++++++++...+++|+. ....||+.|||..|
T Consensus 121 -~~q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 121 -AFQEVDTYGISIPITK-----HNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred -Cccccchhhhhhccce-----EEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 1234677788888765 78889999988888877765 23369999999866
No 234
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=92.24 E-value=1.1 Score=42.05 Aligned_cols=111 Identities=18% Similarity=0.108 Sum_probs=66.2
Q ss_pred HHHHHhHHhHhcC-c-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCC--------ccccccccCCCChh
Q 044559 94 AGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGT--------NRILHHTIGLPDFS 163 (585)
Q Consensus 94 A~~~A~Gyar~tg-~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~--------~~~~~~~~~~~~~~ 163 (585)
+.-+|.|.+.+.. + .++++ ---++.-.+..|..|...++|+++|.-+......-+ +....... ....
T Consensus 55 ~lp~aiGa~la~~~~~vv~i~-GDG~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 131 (186)
T cd02015 55 GLPAAIGAKVARPDKTVICID-GDGSFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTL--DSNP 131 (186)
T ss_pred hHHHHHHHHHhCCCCeEEEEE-cccHHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccC--CCCC
Confidence 4456677666653 3 44443 223444456788889999999999887765421100 00000000 0012
Q ss_pred HHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 164 QELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 164 dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
|...+.+.+-....++++.+++.+.+++|+ ...||+.|++..|-
T Consensus 132 d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 175 (186)
T cd02015 132 DFVKLAEAYGIKGLRVEKPEELEAALKEAL----ASDGPVLLDVLVDP 175 (186)
T ss_pred CHHHHHHHCCCceEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 455677777666788888777666655554 46899999999874
No 235
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=92.18 E-value=0.43 Score=53.27 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=75.9
Q ss_pred hhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeee-ecCCCcCCCCC-CChHHHHH
Q 044559 440 SVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVE-IHDGPYNVIKN-WNYTGLVD 516 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~-~~~~~~~~~~~-~d~~~la~ 516 (585)
+.-+|-|.+... +++.+|++ .=-++...+..|.+|...+.|+++|..+-......+. ..+.....+.. .|...+++
T Consensus 62 A~~~Adgyar~t-gk~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~ 140 (569)
T PRK08327 62 AISMAHGYALVT-GKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVR 140 (569)
T ss_pred HHHHHHHHHHhh-CCCeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHh
Confidence 335677777664 45555554 3335555689999999999999999876432221110 00001111233 58888899
Q ss_pred HhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 517 AIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 517 a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+-- ...++++++++..++++|+. ....||+.|||..|
T Consensus 141 ~vtk-----~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 141 EYVK-----WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred hhhh-----hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 8876 78889999998888888775 23479999999966
No 236
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=92.06 E-value=1.7 Score=40.43 Aligned_cols=111 Identities=12% Similarity=0.011 Sum_probs=62.6
Q ss_pred HHHHhHHhHhcC-c-cEEEEeCChhhHH--HHHHHHHhhhcCCcEEEEeCCCCCcccCCcccccc---cc-CCCChhHHH
Q 044559 95 GYAADGYARSRG-V-GACVVTFTVGGLS--VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHH---TI-GLPDFSQEL 166 (585)
Q Consensus 95 ~~~A~Gyar~tg-~-~v~~~tsGpG~~n--~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~---~~-~~~~~~dq~ 166 (585)
.-+|.|.+.+.. + .+++ .|=|... .+..|..|...++|+++|.-+......-..+.... .. ......|..
T Consensus 57 l~~AiGa~la~p~~~Vv~i--~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 134 (178)
T cd02008 57 IGVAIGMAKASEDKKVVAV--IGDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIE 134 (178)
T ss_pred HHHHhhHHhhCCCCCEEEE--ecChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHH
Confidence 345566666653 3 4444 3444332 26788899999999999988765431111100000 00 000113556
Q ss_pred hhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEec
Q 044559 167 RCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA 208 (585)
Q Consensus 167 ~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP 208 (585)
++++.+--...++.+++++.+ +.+|++.|...+||..|++-
T Consensus 135 ~~a~a~G~~~~~v~~~~~l~~-~~~al~~a~~~~gp~lI~v~ 175 (178)
T cd02008 135 ALVRAIGVKRVVVVDPYDLKA-IREELKEALAVPGVSVIIAK 175 (178)
T ss_pred HHHHHCCCCEEEecCccCHHH-HHHHHHHHHhCCCCEEEEEe
Confidence 777777555677777777763 34555555556889988763
No 237
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.01 E-value=1.7 Score=48.33 Aligned_cols=118 Identities=12% Similarity=0.118 Sum_probs=80.3
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| ++...+..|.+|-+.+.|+++|.-.=...... .+
T Consensus 47 i~~v~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~----~~--- 115 (557)
T PRK08199 47 IRVIVCRQEG---GAAMMAEAYGKLT-GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFRE----RE--- 115 (557)
T ss_pred CcEEEeccHH---HHHHHHHHHHHhc-CCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCccccCC----CC---
Confidence 4455444322 2446788888764 56777776544 44456889999999999999988543222110 11
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+...|...+++.+-- ...+|++++++...+++|+. ....||+.|+|..|
T Consensus 116 ~~q~~d~~~l~~~~tk-----~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 116 AFQEIDYRRMFGPMAK-----WVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred cccccCHHHhhhhhhc-----eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 1244688888888765 78889999998888877775 23469999999876
No 238
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=91.99 E-value=0.6 Score=52.34 Aligned_cols=118 Identities=12% Similarity=0.023 Sum_probs=79.1
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEcc-chhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGD-GSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GD-Gsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|-|.+... +++.+|++-= -++...+..|.+|...+.|+++|...=..+.+. .+.
T Consensus 52 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~----~~~-- 121 (585)
T CHL00099 52 IKHILVRHEQ---GAAHAADGYARST-GKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIG----TDA-- 121 (585)
T ss_pred ceEEEecCHH---HHHHHHHHHHHhc-CCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccC----CCC--
Confidence 3455444332 2446778887764 5676666533 344556889999999999999998754433221 111
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
+...|...+++.+-- ...+|.+++++.+.+++|+. ....||+.|++..|
T Consensus 122 -~q~~d~~~~~~~~tk-----~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 122 -FQEVDIFGITLPIVK-----HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred -ccccchhhhhcCcee-----EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 234566677777765 78889999999888888775 23468999999977
No 239
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=91.85 E-value=0.37 Score=51.81 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=69.1
Q ss_pred HHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcC
Q 044559 442 GATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHN 520 (585)
Q Consensus 442 paAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~ 520 (585)
-+|-|.+.+. +++.+|++- -.+....+..|.+|...+.|+++|...-...... . ..+...|...+++.+-.
T Consensus 52 ~mAdgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~----~---~~~q~~d~~~~~~~~tk 123 (432)
T TIGR00173 52 FFALGLAKAS-GRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRG----C---GANQTIDQPGLFGSYVR 123 (432)
T ss_pred HHHHHHHhcc-CCCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhC----C---CCCcccchhhHHhhccc
Confidence 5677877664 456665554 4455556889999999999999998654432110 1 11334677788887765
Q ss_pred CCCCceeEEEcCHHH------H----HHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 521 GEGKCWTTKVFCEEE------L----IEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 521 ~~~~~~~~~V~~~~e------L----~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
...+|+++++ + ++|++.+.. ...||+.|+|..|-
T Consensus 124 -----~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~-~~~GPV~l~iP~dv 167 (432)
T TIGR00173 124 -----WSLDLPLPEADEPLAYLRSTVDRAVAQAQG-PPPGPVHINVPFRE 167 (432)
T ss_pred -----eeeeCCCCCccccHHHHHHHHHHHHHHhhC-CCCCCEEEeCCCCC
Confidence 6777877665 4 445554442 35699999999775
No 240
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=91.70 E-value=9 Score=35.24 Aligned_cols=146 Identities=16% Similarity=0.137 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCCCh----HHHHHhhhc-CCCCeEE-eCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhH
Q 044559 47 GRHLARRLVQIGATDVFSVPGDFN----LTLLDHLIA-EPGLNLI-GCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 119 (585)
Q Consensus 47 a~~i~~~L~~~GV~~vFg~PG~~~----~~l~~al~~-~~~i~~i-~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~ 119 (585)
++.|.+.+++ .-+.++.-..... ....+.+.+ .++.|++ ....|++.+.+|.|+|+. |+ .++..+..+=+.
T Consensus 4 ~~~l~~~~~~-~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~-G~~pi~~~~~a~Fl~ 81 (167)
T cd07036 4 NEALDEEMER-DPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMN-GLRPIVEIMFADFAL 81 (167)
T ss_pred HHHHHHHHhc-CCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHc-CCEEEEEeehHHHHH
Confidence 4556666544 3444444333211 234566654 3555888 457999999999999996 55 655556666555
Q ss_pred HHHHHHHH--hhhc-------CCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEE-EeCChhhHHHHH
Q 044559 120 SVLNAIAG--AYSE-------NLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQA-VVNNLEDAHELI 189 (585)
Q Consensus 120 n~~~~l~~--A~~~-------~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~-~v~~~~~~~~~l 189 (585)
.++--|.. |+.+ +.||+++...-.. ...+.. | . ..+ ..+++.+..... ...++.++..++
T Consensus 82 ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~--~~~G~t-h-s-----~~~-~a~lr~iPg~~V~~Psd~~e~~~~l 151 (167)
T cd07036 82 PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGG--IGGGAQ-H-S-----QSL-EAWFAHIPGLKVVAPSTPYDAKGLL 151 (167)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCC--CCcChh-h-h-----hhH-HHHHhcCCCCEEEeeCCHHHHHHHH
Confidence 55554422 3333 5899988633221 122221 2 1 112 577777754332 335666666666
Q ss_pred HHHHHHhhhcCCcEEEEec
Q 044559 190 DTAVSTALKESKPVYISVA 208 (585)
Q Consensus 190 ~~A~~~a~~~~GPV~i~iP 208 (585)
+.++ ...||+.+--|
T Consensus 152 ~~~~----~~~~P~~~~e~ 166 (167)
T cd07036 152 KAAI----RDDDPVIFLEH 166 (167)
T ss_pred HHHH----hCCCcEEEEec
Confidence 6555 34699998766
No 241
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=91.38 E-value=1.7 Score=49.15 Aligned_cols=150 Identities=17% Similarity=0.231 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHHcCC--CEEEec----CCCChHHHHHhhhc-CCCCeEE-eCcchHHHHHHHhHHhHhcCc-cEEEEeCC
Q 044559 45 TLGRHLARRLVQIGA--TDVFSV----PGDFNLTLLDHLIA-EPGLNLI-GCCNELNAGYAADGYARSRGV-GACVVTFT 115 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV--~~vFg~----PG~~~~~l~~al~~-~~~i~~i-~~~~E~~A~~~A~Gyar~tg~-~v~~~tsG 115 (585)
+..+++.+.|.+..- ..++++ +|+.. ++.+.+ .++ |++ ...-|++++.+|.|.|. .|. .++.+ ..
T Consensus 320 ~~~~~f~~~L~~la~~d~~iv~isadl~~~~~---~~~f~~~~p~-R~id~GIaE~~mvg~AaGlA~-~G~~P~v~~-f~ 393 (641)
T PRK12571 320 SYTSVFGEELTKEAAEDSDIVAITAAMPLGTG---LDKLQKRFPN-RVFDVGIAEQHAVTFAAGLAA-AGLKPFCAV-YS 393 (641)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEeCCccCCCC---hHHHHHhCCC-cccccCccHHHHHHHHHHHHH-CCCEEEEEe-hH
Confidence 456666666665432 334444 33321 133332 233 555 55699999999999998 676 66654 55
Q ss_pred hhhHHHHHHHH-HhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEE-EEeCChhhHHHHHHHHH
Q 044559 116 VGGLSVLNAIA-GAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQ-AVVNNLEDAHELIDTAV 193 (585)
Q Consensus 116 pG~~n~~~~l~-~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~ 193 (585)
+=+.-++..|. ++...+.||+++...... .+.+..-| +...++.+++.+.... +...++.++..+++.|+
T Consensus 394 ~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~--~g~dG~TH------q~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~ 465 (641)
T PRK12571 394 TFLQRGYDQLLHDVALQNLPVRFVLDRAGL--VGADGATH------AGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAA 465 (641)
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEECCCc--CCCCCccc------cccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 55556777774 467899999988622211 12211223 2345678888875543 33456666666665554
Q ss_pred HHhhhcCCcEEEEecCCC
Q 044559 194 STALKESKPVYISVACNL 211 (585)
Q Consensus 194 ~~a~~~~GPV~i~iP~dv 211 (585)
+. ..|||+|.+|...
T Consensus 466 ~~---~~~P~~ir~~r~~ 480 (641)
T PRK12571 466 AH---DDGPIAVRFPRGE 480 (641)
T ss_pred hC---CCCcEEEEEecCc
Confidence 31 3799999999763
No 242
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.35 E-value=2.7 Score=42.08 Aligned_cols=154 Identities=14% Similarity=0.022 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCC---EEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcC-c-cEEEEeCChhhHH
Q 044559 46 LGRHLARRLVQIGAT---DVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGLS 120 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~---~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~-~v~~~tsGpG~~n 120 (585)
.-.+|-+.|.+.|++ .++...-+... ..-...+ .....+.| ..|.-+|.|...+.. + .++++-=|-+..-
T Consensus 18 il~al~~al~~l~~~~~~~ivvsdiGc~~-~~~~~~~---~~~~~~~~-G~alp~A~GaklA~Pd~~VV~i~GDG~~f~i 92 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVVSGIGCSS-NLPEFLN---TYGIHGIH-GRVLPIATGVKWANPKLTVIGYGGDGDGYGI 92 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCchhh-hhhhhcc---CCCccccc-ccHHHHHHHHHHHCCCCcEEEEECChHHHHc
Confidence 346788888888763 44444333332 2222211 23446666 667778889888764 3 4444333334556
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCcccc------ccc----cCCCC-hhHHHhhhcce-eEEEEEe--CChhhHH
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRIL------HHT----IGLPD-FSQELRCFQTV-TCYQAVV--NNLEDAH 186 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~------~~~----~~~~~-~~dq~~~~~~~-tk~~~~v--~~~~~~~ 186 (585)
.++.+..|...++|+++|.-+......-.++.. +.+ .+..+ -.|...+.+.+ +.|..+. .+++++
T Consensus 93 g~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l- 171 (279)
T PRK11866 93 GLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHL- 171 (279)
T ss_pred cHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHH-
Confidence 788999999999999999876543211111100 000 00000 01444555543 2222222 445555
Q ss_pred HHHHHHHHHhhhcCCcEEEEec
Q 044559 187 ELIDTAVSTALKESKPVYISVA 208 (585)
Q Consensus 187 ~~l~~A~~~a~~~~GPV~i~iP 208 (585)
.++++.|...+||++|++-
T Consensus 172 ---~~~l~~Al~~~Gps~I~v~ 190 (279)
T PRK11866 172 ---KEIIKEAIKHKGFSFIDVL 190 (279)
T ss_pred ---HHHHHHHHhCCCCEEEEEe
Confidence 4555555566899999885
No 243
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=91.26 E-value=1.6 Score=39.86 Aligned_cols=110 Identities=19% Similarity=0.060 Sum_probs=61.2
Q ss_pred HHHHHhHHhHhcC-c-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCcccccc----c-cCCCChhHHH
Q 044559 94 AGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHH----T-IGLPDFSQEL 166 (585)
Q Consensus 94 A~~~A~Gyar~tg-~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~----~-~~~~~~~dq~ 166 (585)
+.-+|.|.+.+.. + .++++-=| ++...+.++..|...+.|+++|.-+............+. . .......|..
T Consensus 51 ~~~~a~Gaa~a~~~~~vv~~~GDG-~~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 129 (168)
T cd00568 51 GLPAAIGAALAAPDRPVVCIAGDG-GFMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFA 129 (168)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcCc-HHhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHH
Confidence 3446677776663 3 44443222 333356888889889999999987755432111000000 0 0000122455
Q ss_pred hhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEec
Q 044559 167 RCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA 208 (585)
Q Consensus 167 ~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP 208 (585)
++++.+--...++.+++++ .+|++.+....||+.|++.
T Consensus 130 ~~a~~~G~~~~~v~~~~~l----~~a~~~a~~~~~p~~i~v~ 167 (168)
T cd00568 130 ALAEAYGAKGVRVEDPEDL----EAALAEALAAGGPALIEVK 167 (168)
T ss_pred HHHHHCCCeEEEECCHHHH----HHHHHHHHhCCCCEEEEEE
Confidence 6666664455677776655 4455555566899999875
No 244
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=90.95 E-value=0.85 Score=51.24 Aligned_cols=119 Identities=5% Similarity=-0.050 Sum_probs=77.7
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++- --+....+..|.+|...+.|+++|...=....+. . .
T Consensus 43 i~~i~~rhE~~---A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G~~~~~~~~----~---~ 111 (597)
T PRK08273 43 PEFVQARHEEM---AAFMAVAHAKFT-GEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAALG----G---H 111 (597)
T ss_pred CeEEEeccHHH---HHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCchhhcC----C---C
Confidence 44555444322 335677777764 456666553 3355556889999999999999998542222110 1 1
Q ss_pred CCCCCChHHHHHHhc-CCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIH-NGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G-~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.+..+|...+++.+- . ...++++++++...+++|+. ....||+.|+|..|-
T Consensus 112 ~~q~~d~~~l~~~vt~k-----~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 112 YQQEVDLQSLFKDVAGA-----FVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDV 165 (597)
T ss_pred CCCccCHHHHHHHHHHH-----HeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcch
Confidence 123467778888876 4 67889998888777777765 224589999999774
No 245
>PRK06154 hypothetical protein; Provisional
Probab=90.95 E-value=1.1 Score=49.87 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=77.4
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCC-CCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVP-EKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p-~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
.+++....-.+ +.-+|-|.+.+.. +++.+|++ ---++...+..|.+|...+.|+++|.......... ..
T Consensus 55 i~~i~~rhE~~---A~~mAdgyar~t~g~~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~------~~ 125 (565)
T PRK06154 55 IRPVIARTERV---AVHMADGYARATSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGSTD------VA 125 (565)
T ss_pred CeEEeeCcHHH---HHHHHHHHHHhcCCCCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEeCCCCccccc------CC
Confidence 44555444322 3356777776653 46777754 33355557899999999999999998654322110 00
Q ss_pred CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
...|...+++.+-. ...+|++++++.+.+++|+. ....||+.|||..|-
T Consensus 126 ---~~~d~~~~~~~vtk-----~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~Dv 177 (565)
T PRK06154 126 ---PNFESLRNYRHITK-----WCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVDV 177 (565)
T ss_pred ---CCcchhhhHhhcce-----eEEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchHH
Confidence 11355567777665 78889999998888877775 235699999999873
No 246
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.75 E-value=0.76 Score=51.42 Aligned_cols=106 Identities=10% Similarity=-0.002 Sum_probs=72.5
Q ss_pred hHHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhc
Q 044559 441 VGATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH 519 (585)
Q Consensus 441 lpaAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 519 (585)
.-+|-|.+.+. +++.+|++. .-++...+..+.+|-+.+.|+++|...-....+ .. ..+...|...+++.+-
T Consensus 54 ~~mAdgyar~t-gk~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~----~~---~~~Qe~d~~~l~~~~t 125 (578)
T PRK06546 54 AFAAAAEAQLT-GKLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQI----GS---GFFQETHPDRLFVECS 125 (578)
T ss_pred HHHHHhHHHhh-CCceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcccc----CC---CCccccChhhhcccce
Confidence 35677777664 567777654 445666688999999999999998753221111 01 1123456677777665
Q ss_pred CCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcC
Q 044559 520 NGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVH 559 (585)
Q Consensus 520 ~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~ 559 (585)
- ...+|++++++...+++|+. ....||+.|++..|
T Consensus 126 k-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 126 G-----YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred e-----eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 4 78889999998887777765 23569999999977
No 247
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=90.72 E-value=9.4 Score=43.04 Aligned_cols=151 Identities=10% Similarity=0.168 Sum_probs=88.7
Q ss_pred CcHHHHHHHHHHHcCC--CEEEec----CCC-ChHHHHHhhhcCCCCeEE-eCcchHHHHHHHhHHhHhcCc-cEEEEeC
Q 044559 44 STLGRHLARRLVQIGA--TDVFSV----PGD-FNLTLLDHLIAEPGLNLI-GCCNELNAGYAADGYARSRGV-GACVVTF 114 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV--~~vFg~----PG~-~~~~l~~al~~~~~i~~i-~~~~E~~A~~~A~Gyar~tg~-~v~~~ts 114 (585)
.+..+++.+.|.+..- +.|+.+ +++ ....|.+.+ |+ |++ ...-|++++.+|.|.|. .|. .+|.+ .
T Consensus 310 ~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~f---P~-R~~d~GIaEq~~vg~AaGlA~-~G~~Pvv~~-~ 383 (617)
T TIGR00204 310 PSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKF---PD-RYFDVAIAEQHAVTFAAGMAI-EGYKPFVAI-Y 383 (617)
T ss_pred ccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHC---cc-ccccCCccHHHHHHHHHHHHH-CCCEEEEEe-c
Confidence 4566777777766543 334442 322 222333333 22 444 56689999999999998 466 66654 5
Q ss_pred ChhhHHHHHHHH-HhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEE-EEeCChhhHHHHHHHH
Q 044559 115 TVGGLSVLNAIA-GAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQ-AVVNNLEDAHELIDTA 192 (585)
Q Consensus 115 GpG~~n~~~~l~-~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A 192 (585)
.+=+.-++.-|. ++...+.||+++....... +....-|| ...++.+++.+.-.. +...++.++..+++.|
T Consensus 384 a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~--g~dG~tH~------~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a 455 (617)
T TIGR00204 384 STFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV--GADGETHQ------GAFDISYLRCIPNMVIMAPSDENELRQMLYTG 455 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC--CCCCcccc------cchHHHHHhcCCCcEEEeeCCHHHHHHHHHHH
Confidence 555544555553 4566889999885433322 22112232 234467888875543 3445666776666665
Q ss_pred HHHhhhcCCcEEEEecCCC
Q 044559 193 VSTALKESKPVYISVACNL 211 (585)
Q Consensus 193 ~~~a~~~~GPV~i~iP~dv 211 (585)
++ ..+|||+|.+|...
T Consensus 456 ~~---~~~~Pv~ir~~r~~ 471 (617)
T TIGR00204 456 YH---YDDGPIAVRYPRGN 471 (617)
T ss_pred Hh---CCCCCEEEEEccCC
Confidence 53 13599999999754
No 248
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=90.52 E-value=0.97 Score=50.01 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=77.2
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEE-ccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~-GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.++++ .--++...+..+.+|-..+.|+++|.-.-...... .+.+
T Consensus 49 i~~i~~~hE~~---A~~~Adgyar~t-g~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~----~~~~- 119 (530)
T PRK07092 49 FRYVLGLQEAV---VVGMADGYAQAT-GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILP----FEPF- 119 (530)
T ss_pred CCEEEEccHHH---HHHHHHHHHHHh-CCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCcccccC----ccch-
Confidence 44555444333 335788888765 46666655 33344566889999999999999887532211110 0111
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
....|...+.+.+-- ...++++++++.+.+++|+. ....||+.|++..|-
T Consensus 120 -~~~~d~~~l~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 120 -LAAVQAAELPKPYVK-----WSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred -hcccCHHHhhccccc-----ceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 123577777777754 67788999988877777765 234589999999764
No 249
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=90.51 E-value=1.3 Score=44.82 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=63.5
Q ss_pred cEEEEeCChhhHHH---HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeC--Ch
Q 044559 108 GACVVTFTVGGLSV---LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVN--NL 182 (585)
Q Consensus 108 ~v~~~tsGpG~~n~---~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~--~~ 182 (585)
.++++..|=|+.+. .-++..|...++|+|+|.-+.... .... .++... ..+...+.+.+--...+|+ ++
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~-i~~~--~~~~~~---~~~~~~~a~a~G~~~~~Vdg~d~ 200 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYA-ISTP--TSRQTA---GTSIADRAAAYGIPGIRVDGNDV 200 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCee-ccCC--HHHHhC---CccHHHHHHhCCCCEEEECCCCH
Confidence 56666778777653 357888899999999998765322 1110 000010 1233445555544445554 56
Q ss_pred hhHHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 044559 183 EDAHELIDTAVSTALKESKPVYISVACNLP 212 (585)
Q Consensus 183 ~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~ 212 (585)
+++.+.+++|++.+....||+.|++-.+-.
T Consensus 201 ~~v~~a~~~A~~~ar~~~~P~lIev~~~r~ 230 (293)
T cd02000 201 LAVYEAAKEAVERARAGGGPTLIEAVTYRL 230 (293)
T ss_pred HHHHHHHHHHHHHHHccCCCEEEEEEEecc
Confidence 788889999999888888999999976543
No 250
>PRK05899 transketolase; Reviewed
Probab=90.46 E-value=2.7 Score=47.55 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=74.4
Q ss_pred eEE-eCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCC
Q 044559 84 NLI-GCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161 (585)
Q Consensus 84 ~~i-~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~ 161 (585)
|++ ...-|++++.+|.|+|...+. .++. |..+=+.-++..+..+.+.+.|++++....... .+.+..-| |
T Consensus 368 R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~-t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~-~g~~G~tH------q 439 (624)
T PRK05899 368 RYIHYGVREFAMAAIANGLALHGGFIPFGG-TFLVFSDYARNAIRLAALMKLPVIYVFTHDSIG-VGEDGPTH------Q 439 (624)
T ss_pred CeeeeChhHHHHHHHHHHHHHcCCCeEEEE-EcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-cCCCCCCc------c
Confidence 555 477999999999999986535 5444 445555557777777778899999986543322 22111222 3
Q ss_pred hhHHHhhhcceeEEE-EEeCChhhHHHHHHHHHHHhhhc-CCcEEEEecCC
Q 044559 162 FSQELRCFQTVTCYQ-AVVNNLEDAHELIDTAVSTALKE-SKPVYISVACN 210 (585)
Q Consensus 162 ~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~-~GPV~i~iP~d 210 (585)
...++.+++.+.... +...++.++..+++.|+ .. .+||||.+|..
T Consensus 440 ~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~ 486 (624)
T PRK05899 440 PVEQLASLRAIPNLTVIRPADANETAAAWKYAL----ERKDGPSALVLTRQ 486 (624)
T ss_pred cHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHH----HcCCCCEEEEEeCC
Confidence 445667887775433 34456666666665554 44 79999999864
No 251
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=90.42 E-value=0.49 Score=49.31 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=70.6
Q ss_pred ccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHH---HHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHH
Q 044559 437 IGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTM---LRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTG 513 (585)
Q Consensus 437 mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta---~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~ 513 (585)
=|-+++.|.|+.++...+++| +.=-.++.-+++-|... .-|++|++++|--=|.++... .+......---.+
T Consensus 35 E~~av~iaaG~~latG~~~~v-~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~d----epqh~~~G~~t~~ 109 (361)
T TIGR03297 35 EGAAVGLAAGAYLATGKRAAV-YMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHD----EPQHVKQGRITLS 109 (361)
T ss_pred chHHHHHHHHHHHhcCCccEE-EEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCC----CchhhHHhHHHHH
Confidence 466888999999986555555 44555666667777555 459999999987666665421 1100001112367
Q ss_pred HHHHhcCCCCCceeEEE-cCHHHHHHHHHhhcC--CCCCCeEEEEEEc
Q 044559 514 LVDAIHNGEGKCWTTKV-FCEEELIEAIENATG--PKKDCLCFIEVLV 558 (585)
Q Consensus 514 la~a~G~~~~~~~~~~V-~~~~eL~~aL~~a~~--~~~~gp~vIeV~v 558 (585)
+.+++|+ ++..+ ++.++..++++++++ .+.++|+.|-|.-
T Consensus 110 lL~~~~i-----~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~ 152 (361)
T TIGR03297 110 LLDALEI-----PWEVLSTDNDEALAQIERALAHALATSRPYALVVRK 152 (361)
T ss_pred HHHHcCC-----CEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 8899999 88888 455555555554443 2377887776543
No 252
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=90.26 E-value=1.7 Score=39.45 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=61.1
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcc-cHHHHH-HHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHH
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQV-TAQDVS-TMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDA 517 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~-~~~eL~-ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a 517 (585)
.++.|.|.++.. -++++... ..|.. ....|- .+...++|+++++- .++++.. .+|..- ...+...+.+.
T Consensus 51 ~vg~A~GlA~~G-~~pi~~~~--~~f~~ra~dqi~~~~a~~~~pv~~~~~-~~g~~~~---~~G~tH--~~~~~~a~~~~ 121 (156)
T cd07033 51 MVGIAAGLALHG-LKPFVSTF--SFFLQRAYDQIRHDVALQNLPVKFVGT-HAGISVG---EDGPTH--QGIEDIALLRA 121 (156)
T ss_pred HHHHHHHHHHCC-CeEEEEEC--HHHHHHHHHHHHHHHhccCCCeEEEEE-CCcEecC---CCCccc--chHHHHHHhcC
Confidence 456777877753 45555544 44443 345565 66678899887554 5544320 022110 12333444444
Q ss_pred h-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEE
Q 044559 518 I-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEV 556 (585)
Q Consensus 518 ~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV 556 (585)
+ |+ +-+...+++|+...++++++ .++|++|-+
T Consensus 122 iPg~-----~v~~Ps~~~~~~~ll~~a~~--~~~P~~irl 154 (156)
T cd07033 122 IPNM-----TVLRPADANETAAALEAALE--YDGPVYIRL 154 (156)
T ss_pred CCCC-----EEEecCCHHHHHHHHHHHHh--CCCCEEEEe
Confidence 4 33 77778999999999999996 667988754
No 253
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=89.79 E-value=2.9 Score=43.09 Aligned_cols=121 Identities=16% Similarity=0.030 Sum_probs=78.8
Q ss_pred CeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccC
Q 044559 83 LNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIG 158 (585)
Q Consensus 83 i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~ 158 (585)
...++...=.-|+.+|.+....... .|+++..|=|++| ..-++-=|..-+.|||+++=....... . ....+
T Consensus 134 ~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiS-v----p~~~q 208 (358)
T COG1071 134 GSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAIS-V----PRSRQ 208 (358)
T ss_pred CCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceee-c----chhhc
Confidence 4445555555677777664443324 5999999999887 566777788889999999865443311 1 01111
Q ss_pred C-CChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEec
Q 044559 159 L-PDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA 208 (585)
Q Consensus 159 ~-~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP 208 (585)
. .+...+....-.+.-..+.=.++..+.+.+.+|...|+.+.||+.|+.=
T Consensus 209 ~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~ 259 (358)
T COG1071 209 TAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259 (358)
T ss_pred ccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 0 1122233333345555555567888899999999999999999999874
No 254
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=89.70 E-value=5 Score=40.72 Aligned_cols=157 Identities=14% Similarity=0.045 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHcCC--CEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhH--
Q 044559 45 TLGRHLARRLVQIGA--TDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL-- 119 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV--~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~-- 119 (585)
..-..+.+.|.+.|+ +.+..+.|.......-.... ...+.+.| ..+.-+|.|.+.+... -|+ +.+|=|..
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~---~~~~~g~m-G~alpaAiGaklA~pd~~VV-~i~GDG~~~~ 102 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL---SHGLHTLH-GRAIAFATGAKLANPDLEVI-VVGGDGDLAS 102 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc---cCccchhh-ccHHHHHHHHHHHCCCCcEE-EEeCccHHHh
Confidence 455778899999887 34544455444332211111 22233334 3456678887777643 333 23454532
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccc---c---cc----ccCCC-ChhHHHhhhccee-EEE--EEeCChhhH
Q 044559 120 SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRI---L---HH----TIGLP-DFSQELRCFQTVT-CYQ--AVVNNLEDA 185 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~---~---~~----~~~~~-~~~dq~~~~~~~t-k~~--~~v~~~~~~ 185 (585)
-.++.+..|...++|+++|.-+......-+++. . .. ..+.. ...|...+.+.+- .+. .++.+++++
T Consensus 103 mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL 182 (301)
T PRK05778 103 IGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQL 182 (301)
T ss_pred ccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHH
Confidence 345678899999999999987754322111110 0 00 00000 0123344544442 222 257777777
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 186 HELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 186 ~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
.+.|++|+ ..+||++|++...
T Consensus 183 ~~ai~~A~----~~~GpalIeV~~~ 203 (301)
T PRK05778 183 VELIKKAI----SHKGFAFIDVLSP 203 (301)
T ss_pred HHHHHHHH----hCCCCEEEEEcCC
Confidence 66666665 4689999998754
No 255
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=89.57 E-value=6.1 Score=36.53 Aligned_cols=133 Identities=18% Similarity=0.083 Sum_probs=71.9
Q ss_pred CCChHHHHHhhhcCCCCeEEeCcchHHHH---HHHhHHhHhcC-c-cEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeC
Q 044559 67 GDFNLTLLDHLIAEPGLNLIGCCNELNAG---YAADGYARSRG-V-GACVVTFTVG-GLSVLNAIAGAYSENLPLICIVG 140 (585)
Q Consensus 67 G~~~~~l~~al~~~~~i~~i~~~~E~~A~---~~A~Gyar~tg-~-~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g 140 (585)
|.........+.-...-+++.... .+-+ -+|.|.+.+.. + .+|++ |=| ..-.+..+..|...+.|+++|.-
T Consensus 25 g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~--GDG~f~~~~~el~ta~~~~~p~~~iV~ 101 (178)
T cd02002 25 VTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAII--GDGSFMYTIQALWTAARYGLPVTVVIL 101 (178)
T ss_pred CcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEE--cCchhhccHHHHHHHHHhCCCeEEEEE
Confidence 444444444443212346666555 4433 36778777653 3 44443 333 33345788888888999999988
Q ss_pred CCCCcccCCcccccc-----------ccCC---CChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEE
Q 044559 141 GPNSNDYGTNRILHH-----------TIGL---PDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYIS 206 (585)
Q Consensus 141 ~~~~~~~~~~~~~~~-----------~~~~---~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~ 206 (585)
+.......+. .++ .... ....|..++++.+--...++.+++++.+.+++|+ ..+||+.|+
T Consensus 102 nN~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~vi~ 175 (178)
T cd02002 102 NNRGYGALRS--FLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDEALREAL----AEGGPALIE 175 (178)
T ss_pred cCccHHHHHH--HHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCCHHHHHHHHHHHH----hCCCCEEEE
Confidence 7653211100 000 0000 0012445666666445677887666655555554 467999998
Q ss_pred ec
Q 044559 207 VA 208 (585)
Q Consensus 207 iP 208 (585)
+.
T Consensus 176 v~ 177 (178)
T cd02002 176 VV 177 (178)
T ss_pred EE
Confidence 74
No 256
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=89.51 E-value=2.5 Score=38.96 Aligned_cols=97 Identities=19% Similarity=0.098 Sum_probs=62.0
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHH-H-HHHHHh--------CCceEEEEEeCCcceeeeeecCCCcCCCCCC
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQD-V-STMLRC--------GQKTIIFLINNGGYTIEVEIHDGPYNVIKNW 509 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~e-L-~ta~~~--------~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~ 509 (585)
.++.|.|.++. ++++++-+.=+.|+.-.-| | ..+... ++|++++. ..++++. +|.. +..
T Consensus 56 ~vg~AaGlA~~--G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~-~~gg~~~-----~G~t---hs~ 124 (167)
T cd07036 56 IVGLAVGAAMN--GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRG-PNGGGIG-----GGAQ---HSQ 124 (167)
T ss_pred HHHHHHHHHHc--CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEE-eCCCCCC-----cChh---hhh
Confidence 46777777764 4556554456667653222 2 122222 58888876 5666542 2322 223
Q ss_pred ChHHHHHHh-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEE
Q 044559 510 NYTGLVDAI-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFI 554 (585)
Q Consensus 510 d~~~la~a~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vI 554 (585)
.+..+.+++ |+ ..+...++.|+..+++.+++ .++|+++
T Consensus 125 ~~~a~lr~iPg~-----~V~~Psd~~e~~~~l~~~~~--~~~P~~~ 163 (167)
T cd07036 125 SLEAWFAHIPGL-----KVVAPSTPYDAKGLLKAAIR--DDDPVIF 163 (167)
T ss_pred hHHHHHhcCCCC-----EEEeeCCHHHHHHHHHHHHh--CCCcEEE
Confidence 445777777 55 77888999999999999986 7789887
No 257
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.50 E-value=2.9 Score=46.77 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=87.1
Q ss_pred CCcHHHHHHHHHHHcCCC--EEEec----CCCChHHHHHhhhc-CCCCeEE-eCcchHHHHHHHhHHhHhcCc-cEEEEe
Q 044559 43 ESTLGRHLARRLVQIGAT--DVFSV----PGDFNLTLLDHLIA-EPGLNLI-GCCNELNAGYAADGYARSRGV-GACVVT 113 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~--~vFg~----PG~~~~~l~~al~~-~~~i~~i-~~~~E~~A~~~A~Gyar~tg~-~v~~~t 113 (585)
..+..+.+.+.|.+..-+ .++.+ +|... + +.+.+ .|+ |++ ...-|++++.+|.|.|. .|. .++ .+
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~--~-~~f~~~fP~-R~id~GIaEq~~v~~AaGlA~-~G~~Pvv-~~ 350 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFG--L-KEFRKKYPD-QYVDVGIAEQESVAFASGIAA-NGARPVI-FV 350 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCccccccC--c-HHHHHhccc-cccCCCchHHHHHHHHHHHHH-CcCeEEE-Ee
Confidence 345667777777665433 34443 33321 2 33322 232 555 55689999999999998 565 766 44
Q ss_pred CChhhHHHHHHHH-HhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEE-EeCChhhHHHHHHH
Q 044559 114 FTVGGLSVLNAIA-GAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQA-VVNNLEDAHELIDT 191 (585)
Q Consensus 114 sGpG~~n~~~~l~-~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~-~v~~~~~~~~~l~~ 191 (585)
..+=+.-++-=|. ++...+.||+++....... +.+ .-| +...++.+++.+..... ...++.++..+++.
T Consensus 351 fs~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~--~dG-~TH------~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~ 421 (581)
T PRK12315 351 NSTFLQRAYDQLSHDLAINNNPAVMIVFGGSIS--GND-VTH------LGIFDIPMISNIPNLVYLAPTTKEELIAMLEW 421 (581)
T ss_pred eHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--CCC-ccc------cccHHHHHHhcCCCCEEEecCCHHHHHHHHHH
Confidence 4444434444332 3456889999986532222 122 222 23345788888866544 33455555555554
Q ss_pred HHHHhhhc-CCcEEEEecCCC
Q 044559 192 AVSTALKE-SKPVYISVACNL 211 (585)
Q Consensus 192 A~~~a~~~-~GPV~i~iP~dv 211 (585)
|... .|||+|.+|...
T Consensus 422 ----a~~~~~gP~~ir~~r~~ 438 (581)
T PRK12315 422 ----ALTQHEHPVAIRVPEHG 438 (581)
T ss_pred ----HHhCCCCcEEEEEcCCc
Confidence 4444 699999999764
No 258
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.44 E-value=3.2 Score=46.46 Aligned_cols=151 Identities=12% Similarity=0.192 Sum_probs=88.0
Q ss_pred CcHHHHHHHHHHHcCC--CEEEec-CC---CC-hHHHHHhhhcCCCCeEE-eCcchHHHHHHHhHHhHhcCc-cEEEEeC
Q 044559 44 STLGRHLARRLVQIGA--TDVFSV-PG---DF-NLTLLDHLIAEPGLNLI-GCCNELNAGYAADGYARSRGV-GACVVTF 114 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV--~~vFg~-PG---~~-~~~l~~al~~~~~i~~i-~~~~E~~A~~~A~Gyar~tg~-~v~~~ts 114 (585)
.+..+++.+.|.+..= ..++++ ++ +. ...|.+.. ++ |++ ...-|++.+.+|.|.|. .|. .++.+ .
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~---p~-R~i~~GIaE~~mvg~A~GlA~-~G~~p~~~~-f 352 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRF---PD-RYFDVGIAEQHAVTFAAGLAT-EGLKPVVAI-Y 352 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHh---hh-hccCCChHHHHHHHHHHHHHH-CCCeeEEEe-e
Confidence 5567777777766532 234442 22 22 22222222 22 444 55689999999999999 465 55544 5
Q ss_pred ChhhHHHHHHHHH-hhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEE-EEeCChhhHHHHHHHH
Q 044559 115 TVGGLSVLNAIAG-AYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQ-AVVNNLEDAHELIDTA 192 (585)
Q Consensus 115 GpG~~n~~~~l~~-A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A 192 (585)
.+=+.-++.-+.. +-+.+.||+++....... +.+...| +...++.+++.+.... +...++.++..+++.|
T Consensus 353 ~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~--g~dG~tH------~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a 424 (580)
T PRK05444 353 STFLQRAYDQVIHDVALQNLPVTFAIDRAGLV--GADGPTH------QGAFDLSYLRCIPNMVIMAPSDENELRQMLYTA 424 (580)
T ss_pred HHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcC--CCCCccc------cccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 5544445554544 567899999996543322 2211222 3345678888876543 3445666665555554
Q ss_pred HHHhhhcCCcEEEEecCCC
Q 044559 193 VSTALKESKPVYISVACNL 211 (585)
Q Consensus 193 ~~~a~~~~GPV~i~iP~dv 211 (585)
+. ..++||||.++...
T Consensus 425 ~~---~~~~P~~ir~~r~~ 440 (580)
T PRK05444 425 LA---YDDGPIAIRYPRGN 440 (580)
T ss_pred Hh---CCCCcEEEEecCCC
Confidence 43 12799999999765
No 259
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=89.38 E-value=2.1 Score=43.91 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=66.8
Q ss_pred HHhHHhHhc---Cc-cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhh
Q 044559 97 AADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 169 (585)
Q Consensus 97 ~A~Gyar~t---g~-~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~ 169 (585)
.|.|.+.+. +. .++++..|=|.++ ..-++.-|...+.|+|+|.-+.... .... .++... ..+..++.
T Consensus 118 ~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg-~s~~--~~~~~~---~~~~a~~A 191 (315)
T TIGR03182 118 LATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA-MGTS--VERSSS---VTDLYKRG 191 (315)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcc-ccCC--HHHHhC---CcCHHHHH
Confidence 345555443 33 5666777877765 2345666777899999998775322 1110 000111 11233444
Q ss_pred cceeEEEEEeC--ChhhHHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 044559 170 QTVTCYQAVVN--NLEDAHELIDTAVSTALKESKPVYISVACNLP 212 (585)
Q Consensus 170 ~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~ 212 (585)
+.+--...+|+ ++.++.+.+.+|++.++...||+.|++-..-.
T Consensus 192 ~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 236 (315)
T TIGR03182 192 ESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRF 236 (315)
T ss_pred HhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcC
Confidence 44433445565 46678889999999998889999999976543
No 260
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=89.36 E-value=7.4 Score=36.71 Aligned_cols=156 Identities=16% Similarity=0.098 Sum_probs=82.5
Q ss_pred CcHHHHHHHHHHHcCC---CE-EEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcC-c-cEEEEeCChh
Q 044559 44 STLGRHLARRLVQIGA---TD-VFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-V-GACVVTFTVG 117 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV---~~-vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~-~v~~~tsGpG 117 (585)
....+++.+.+.+.|+ +. ++.=-|. .......+ .+....... ..+.-+|.|.+.+.. + .++++ |=|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~d~ii~~D~G~-~~~~~~~~----~~~~~~g~m-G~glpaAiGa~la~p~r~Vv~i~--GDG 79 (193)
T cd03375 8 GSILKALAKALAELGIDPEKVVVVSGIGC-SSRLPYYF----NTYGFHTLH-GRALAVATGVKLANPDLTVIVVS--GDG 79 (193)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCh-hceehhhc----cccchhhhh-ccHHHHHHHHHHhCCCCeEEEEe--ccc
Confidence 4566788899988887 33 3433333 22111111 111111000 224447788777764 3 44443 444
Q ss_pred h--HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCcccccc---------c-cCC-CChhHHHhhhcce-eEEE--EEeCC
Q 044559 118 G--LSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHH---------T-IGL-PDFSQELRCFQTV-TCYQ--AVVNN 181 (585)
Q Consensus 118 ~--~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~---------~-~~~-~~~~dq~~~~~~~-tk~~--~~v~~ 181 (585)
. .-.+..+..|...++|+++|.-+......-+++.... . .+. ....|...+.+.+ .++. .++.+
T Consensus 80 s~f~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~ 159 (193)
T cd03375 80 DLAAIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGD 159 (193)
T ss_pred hHhhccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCC
Confidence 3 2345788889999999999987754432211110000 0 000 0012444555554 3332 35777
Q ss_pred hhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 182 LEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 182 ~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
++++...+++|+ ..+||+.|++..+=
T Consensus 160 ~~el~~al~~al----~~~gp~vIev~~~C 185 (193)
T cd03375 160 IKQLKEIIKKAI----QHKGFSFVEVLSPC 185 (193)
T ss_pred HHHHHHHHHHHH----hcCCCEEEEEECCC
Confidence 777766666655 45899999998654
No 261
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=89.18 E-value=18 Score=33.42 Aligned_cols=112 Identities=14% Similarity=0.070 Sum_probs=64.1
Q ss_pred HHHHHhHHhHhc-Cc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCc-c--ccccccCC-CChhHHHh
Q 044559 94 AGYAADGYARSR-GV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTN-R--ILHHTIGL-PDFSQELR 167 (585)
Q Consensus 94 A~~~A~Gyar~t-g~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~-~--~~~~~~~~-~~~~dq~~ 167 (585)
+.-+|.|.+.+. ++ .++++-=|.-..+ +..+..|...++|+++|.-+.......+. + ......+. ....|..+
T Consensus 56 ~~~~aiGa~~a~~~~~vv~i~GDG~f~~~-~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 134 (178)
T cd02014 56 GLPGAIAAKLAYPDRQVIALSGDGGFAML-MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAK 134 (178)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHH
Confidence 444667766654 34 5555544443444 67788899999999999877653211000 0 00000010 01124456
Q ss_pred hhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 168 CFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 168 ~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
+.+.+--...++.+++++.+.++ .+....+|+.|++..|
T Consensus 135 la~a~G~~~~~v~~~~el~~~l~----~a~~~~~p~liev~~~ 173 (178)
T cd02014 135 IAEAMGIKGIRVEDPDELEAALD----EALAADGPVVIDVVTD 173 (178)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHH----HHHhCCCCEEEEEEeC
Confidence 66666444667888777655544 4445579999999865
No 262
>PRK06163 hypothetical protein; Provisional
Probab=88.92 E-value=22 Score=33.87 Aligned_cols=156 Identities=15% Similarity=0.027 Sum_probs=80.5
Q ss_pred CcHHHHHHHHHHHcCCC-EEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcC-c-cEEEEeCChhhH-
Q 044559 44 STLGRHLARRLVQIGAT-DVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGL- 119 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~-~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~-~v~~~tsGpG~~- 119 (585)
++-.+++-+......=+ .++.=-|.....++..- ..+ -+++..-.=..+.-+|.|.+.+.. + .+|+ .|=|..
T Consensus 13 ~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~-~~~-~~~~~~GsMG~glpaAiGaalA~p~r~Vv~i--~GDG~f~ 88 (202)
T PRK06163 13 MNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAG-QRP-QNFYMLGSMGLAFPIALGVALAQPKRRVIAL--EGDGSLL 88 (202)
T ss_pred cCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhh-cCC-CCeEeecccccHHHHHHHHHHhCCCCeEEEE--EcchHHH
Confidence 34444444444444322 24444444333344332 222 233322222334446677666653 3 4443 344433
Q ss_pred HHHHHHHHhhh-cCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEE-EEEeCChhhHHHHHHHHHHHhh
Q 044559 120 SVLNAIAGAYS-ENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QAVVNNLEDAHELIDTAVSTAL 197 (585)
Q Consensus 120 n~~~~l~~A~~-~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~ 197 (585)
=.+..|..|.. .++|+++|.-+........++ ........|...+.+.+--. .+++++.+++...+++|+
T Consensus 89 m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~----~~~~~~~~Df~~lA~a~G~~~~~~v~~~~el~~al~~a~---- 160 (202)
T PRK06163 89 MQLGALGTIAALAPKNLTIIVMDNGVYQITGGQ----PTLTSQTVDVVAIARGAGLENSHWAADEAHFEALVDQAL---- 160 (202)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCc----cCCCCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHH----
Confidence 34577777754 478998888776443221111 00001113455666666433 567888888777776665
Q ss_pred hcCCcEEEEecCCC
Q 044559 198 KESKPVYISVACNL 211 (585)
Q Consensus 198 ~~~GPV~i~iP~dv 211 (585)
...||+.|++..|-
T Consensus 161 ~~~~p~lIeV~i~~ 174 (202)
T PRK06163 161 SGPGPSFIAVRIDD 174 (202)
T ss_pred hCCCCEEEEEEecC
Confidence 45799999999763
No 263
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=88.57 E-value=1.3 Score=48.93 Aligned_cols=109 Identities=7% Similarity=-0.052 Sum_probs=68.0
Q ss_pred HHHHhhhhcCCCCcEEEEEc-cchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc--CCCCCC-ChHHHHHH
Q 044559 442 GATLGYAQSVPEKRVIACIG-DGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY--NVIKNW-NYTGLVDA 517 (585)
Q Consensus 442 paAiGaalA~p~r~vv~v~G-DGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~--~~~~~~-d~~~la~a 517 (585)
-+|-|.+.+. +++.+|++- --+..-.+..|.+|...++|+++|.-+-...... .+.+ .....+ |...+++.
T Consensus 52 ~~Adgyar~t-g~~gv~~~t~GpG~~n~~~gia~A~~~~~Pvl~i~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 52 FAADAAARYR-GTLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGN----AGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHHhHHHHhh-CCceEEEEecchHHHhhhhHHHHHhhcCCCEEEEECCCCccccc----CCceeEeeccchHHHHHhhhh
Confidence 4566766654 456665553 3344456789999999999999998654422211 1111 011123 35567776
Q ss_pred hcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 518 IHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 518 ~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
+-. ...+|.+++++.+.+++++. ....||+.|+|..|-
T Consensus 127 vtk-----~~~~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv 166 (535)
T TIGR03394 127 VTC-----DQAVLDDPATAPAEIARVLGSARELSRPVYLEIPRDM 166 (535)
T ss_pred heE-----EEEEeCChHHhHHHHHHHHHHHHHCCCCEEEEechhh
Confidence 654 67778888777666666654 225689999999884
No 264
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=88.52 E-value=15 Score=34.12 Aligned_cols=106 Identities=17% Similarity=0.084 Sum_probs=59.2
Q ss_pred HHHHHhHHhHhcCc-cEEEEeCChhhHH-HHHHHHHhhhcCC-cEEEEeCCCCCcccCCccccccccCCCChhHHHhhhc
Q 044559 94 AGYAADGYARSRGV-GACVVTFTVGGLS-VLNAIAGAYSENL-PLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQ 170 (585)
Q Consensus 94 A~~~A~Gyar~tg~-~v~~~tsGpG~~n-~~~~l~~A~~~~~-PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~ 170 (585)
+.-+|.|.+.+..+ .+|+ .|=|... .+..+..|...+. |+++|.-+.........+ ........|..++.+
T Consensus 47 ~lp~AiGaala~~~~vv~i--~GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~----~~~~~~~~d~~~lA~ 120 (179)
T cd03372 47 ASSIGLGLALAQPRKVIVI--DGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQ----PTHAGKKTDLEAVAK 120 (179)
T ss_pred HHHHHHHHHhcCCCcEEEE--ECCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCCC----CCCCCCCCCHHHHHH
Confidence 33466666655434 4444 4555553 3678888887775 687776554432211110 000011224456666
Q ss_pred ceeEEEEEeC-ChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 171 TVTCYQAVVN-NLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 171 ~~tk~~~~v~-~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
.+--...++. +++++.+.+++|+ .||..|++..+-
T Consensus 121 a~G~~~~~v~~~~~el~~al~~a~------~gp~lIev~~~~ 156 (179)
T cd03372 121 ACGLDNVATVASEEAFEKAVEQAL------DGPSFIHVKIKP 156 (179)
T ss_pred HcCCCeEEecCCHHHHHHHHHHhc------CCCEEEEEEEcC
Confidence 6644445666 6666655555554 689999999864
No 265
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=88.14 E-value=4.5 Score=37.76 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=60.5
Q ss_pred HHHHHhHHhHhcCc-cEEEEeCChhhHH-HHHHHHHhhhcC-CcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhc
Q 044559 94 AGYAADGYARSRGV-GACVVTFTVGGLS-VLNAIAGAYSEN-LPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQ 170 (585)
Q Consensus 94 A~~~A~Gyar~tg~-~v~~~tsGpG~~n-~~~~l~~A~~~~-~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~ 170 (585)
+.-+|.|.+.+..+ .+|++ |=|... .+..+..|...+ .|+++|.-+......-..+ ........|..++.+
T Consensus 47 ~lpaAiGa~la~~~~Vv~i~--GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q----~~~~~~~~d~~~lA~ 120 (181)
T TIGR03846 47 ASSIGLGLALATDRTVIVID--GDGSLLMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQ----PTPASRRTDLELVAK 120 (181)
T ss_pred HHHHHHHHHHcCCCcEEEEE--cchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccccccCc----CCCCCCCCCHHHHHH
Confidence 34466776666544 44443 434333 346777777777 5999998665432111110 000001234556666
Q ss_pred ceeEEEEE-eCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 171 TVTCYQAV-VNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 171 ~~tk~~~~-v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
.+--...+ +.+++++...++ +...+||+.|++..|-
T Consensus 121 a~G~~~~~~v~~~~~l~~al~-----a~~~~~p~li~v~~~~ 157 (181)
T TIGR03846 121 AAGIRNVEKVADEEELRDALK-----ALAMKGPTFIHVKVKP 157 (181)
T ss_pred HCCCCeEEEeCCHHHHHHHHH-----HHcCCCCEEEEEEeCC
Confidence 66444444 888777655553 3345799999999763
No 266
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=88.09 E-value=2.3 Score=48.89 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=62.0
Q ss_pred EEEEEccchhccc--HHHHHHHHH-hCCc---eEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEE
Q 044559 456 VIACIGDGSFQVT--AQDVSTMLR-CGQK---TIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTK 529 (585)
Q Consensus 456 vv~v~GDGsf~~~--~~eL~ta~~-~~lp---v~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~ 529 (585)
.|++-||.+|-=. ..|-.++.+ .+.+ .+.||.||. +|+.-...... .......+|+++++ ..+.
T Consensus 650 pi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNq-iGftT~p~~~R----ss~y~td~ak~~~~-----Pifh 719 (1228)
T PRK12270 650 PILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQ-VGFTTAPESSR----SSEYATDVAKMIQA-----PIFH 719 (1228)
T ss_pred EEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecC-cccccCccccc----cchhhHHHHhhcCC-----CEEe
Confidence 4678899998653 444434444 4566 778888877 44411000000 12345677889998 7888
Q ss_pred E--cCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 530 V--FCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 530 V--~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
| ++++....+.+.|++ .+.++++|||+.+-+
T Consensus 720 VNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYR 754 (1228)
T PRK12270 720 VNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYR 754 (1228)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 7 478888887777776 456899999999864
No 267
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=87.82 E-value=1.8 Score=48.33 Aligned_cols=106 Identities=11% Similarity=-0.028 Sum_probs=70.6
Q ss_pred HHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcC
Q 044559 442 GATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHN 520 (585)
Q Consensus 442 paAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~ 520 (585)
-+|-|.+.+. +++.+|+++=| +....+..+.+|...++|+++|.-+-...... .+ .+...|...+++.+-.
T Consensus 55 ~~Adgyar~t-g~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~----~~---~~Q~~d~~~l~~~itk 126 (574)
T PRK09124 55 FAAGAEAQLT-GELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIG----SG---YFQETHPQELFRECSH 126 (574)
T ss_pred HHHHHHHHhh-CCcEEEEECCCCCHHHHHHHHHHHhhcCCCEEEEecCCccccCC----CC---CccccChhhhccccee
Confidence 5677776653 56788876443 45556788999999999999998653322110 11 1234677777776654
Q ss_pred CCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 521 GEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 521 ~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
...++++++++...+++|+. ....||+.|++..|-
T Consensus 127 -----~~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv 163 (574)
T PRK09124 127 -----YCELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDV 163 (574)
T ss_pred -----eeEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 67778888887666665554 225599999998763
No 268
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=87.50 E-value=5.8 Score=37.28 Aligned_cols=107 Identities=20% Similarity=0.104 Sum_probs=60.0
Q ss_pred HHHHHhHHhHhcC-c-cEEEEeCChhhH-HHHHHHHHhhhcCC-cEEEEeCCCCCcccCCccccccccCCCChhHHHhhh
Q 044559 94 AGYAADGYARSRG-V-GACVVTFTVGGL-SVLNAIAGAYSENL-PLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 169 (585)
Q Consensus 94 A~~~A~Gyar~tg-~-~v~~~tsGpG~~-n~~~~l~~A~~~~~-PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~ 169 (585)
+.-+|.|.+.+.. + .+|++ |=|.. -.+..|..+...+. |+++|.-+......-.++ .... ...|..++.
T Consensus 53 ~lpaAiGaala~p~~~Vv~i~--GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~---~~~~--~~~d~~~~A 125 (188)
T cd03371 53 ASQIALGIALARPDRKVVCID--GDGAALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQ---PTVS--FDVSLPAIA 125 (188)
T ss_pred HHHHHHHHHHhCCCCcEEEEe--CCcHHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCCc---CCCC--CCCCHHHHH
Confidence 4456677766553 4 44443 43333 24567888777776 677777654432111110 0111 113445666
Q ss_pred cce-eEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 170 QTV-TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 170 ~~~-tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
+.+ .++..++.+++++.+.+++|+ ..++|+.|++..+-
T Consensus 126 ~a~G~~~~~~v~~~~el~~al~~a~----~~~~p~lIev~~~~ 164 (188)
T cd03371 126 KACGYRAVYEVPSLEELVAALAKAL----AADGPAFIEVKVRP 164 (188)
T ss_pred HHcCCceEEecCCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 665 344456777777766666554 45799999998764
No 269
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=87.44 E-value=7.3 Score=38.74 Aligned_cols=155 Identities=13% Similarity=0.066 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHcC---CCEEEecCCCChHHHHHhhhc-CCCCeEE-eCcchHHHHHHHhHHhHhcCccEEEEeCChhhH
Q 044559 45 TLGRHLARRLVQIG---ATDVFSVPGDFNLTLLDHLIA-EPGLNLI-GCCNELNAGYAADGYARSRGVGACVVTFTVGGL 119 (585)
Q Consensus 45 ~~a~~i~~~L~~~G---V~~vFg~PG~~~~~l~~al~~-~~~i~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~ 119 (585)
+..+.+.+.|.++| -+-|.-.-......=...+.+ .|+ |++ ..--|++...+|.|.|....+..+. |.++=++
T Consensus 8 ~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPd-R~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~-tfa~F~s 85 (312)
T COG3958 8 SLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPD-RFFNVGIAEQDMVGTAAGLALAGKKPFVS-TFAAFLS 85 (312)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCch-hheecchHHHHHHHHHHHHHhcCCCceee-chHHHHH
Confidence 34455555555444 444544444332222222322 232 333 5678999999999999875445443 4544433
Q ss_pred -HHHHHHHHhh-hcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhh
Q 044559 120 -SVLNAIAGAY-SENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTAL 197 (585)
Q Consensus 120 -n~~~~l~~A~-~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~ 197 (585)
-+.-=|.++- +++.||=++...........+ . +||....+.+++.+.+.....+ .|.. ..+.++..+.
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG-~------sHq~~EDiaimR~lpn~~V~~P--~D~v-~~~~i~~~~~ 155 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDG-S------SHQALEDIAIMRGLPNMTVIAP--ADAV-ETRAILDQIA 155 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCC-c------cchhHHHHHHHhcCCCceEEcc--CcHH-HHHHHHHHHH
Confidence 2333333322 567787777666544422222 1 2345566889998887665443 3333 5666677777
Q ss_pred hcCCcEEEEecC-CC
Q 044559 198 KESKPVYISVAC-NL 211 (585)
Q Consensus 198 ~~~GPV~i~iP~-dv 211 (585)
..+||||+.+.. ++
T Consensus 156 ~~~GP~Y~Rl~R~~~ 170 (312)
T COG3958 156 DYKGPVYMRLGRGKV 170 (312)
T ss_pred hcCCCEEEEecCCCC
Confidence 789999999998 44
No 270
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=87.35 E-value=20 Score=35.91 Aligned_cols=153 Identities=11% Similarity=-0.012 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCC---CEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcC-c-cEEEEeCChhhHH-
Q 044559 47 GRHLARRLVQIGA---TDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGLS- 120 (585)
Q Consensus 47 a~~i~~~L~~~GV---~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~-~v~~~tsGpG~~n- 120 (585)
-+.+++.|.+.++ +.++....+ ....+-... ....+.+.| ..|.-+|.|.+.+.. + .+++ +|=|..-
T Consensus 28 ~~~v~~al~e~~~~~~d~ivvsdiG-c~~~~~~~~---~~~~~~~~~-G~alPaAiGaklA~Pdr~VV~i--~GDG~f~~ 100 (277)
T PRK09628 28 LKSIIRAIDKLGWNMDDVCVVSGIG-CSGRFSSYV---NCNTVHTTH-GRAVAYATGIKLANPDKHVIVV--SGDGDGLA 100 (277)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCcC-HHHHhhccC---CCCceeecc-ccHHHHHHHHHHHCCCCeEEEE--ECchHHHH
Confidence 4568899988863 344443333 333322222 233444445 467778899888764 4 3333 4545432
Q ss_pred -HHHHHHHhhhcCCcEEEEeCCCCCcccCCcccc--------cc--ccCCC-ChhHHHhhhcce-eEE--EEEeCChhhH
Q 044559 121 -VLNAIAGAYSENLPLICIVGGPNSNDYGTNRIL--------HH--TIGLP-DFSQELRCFQTV-TCY--QAVVNNLEDA 185 (585)
Q Consensus 121 -~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~--------~~--~~~~~-~~~dq~~~~~~~-tk~--~~~v~~~~~~ 185 (585)
...-+..|...++|+++|.-+......-+++.. .. ..+.. .-.|...+.+.+ .++ ..++.+++++
T Consensus 101 ~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el 180 (277)
T PRK09628 101 IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKL 180 (277)
T ss_pred hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHH
Confidence 234555688999999999876543221111000 00 00000 011334454544 233 2578888887
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 186 HELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 186 ~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
...|++|+ ..+||+.|++..+
T Consensus 181 ~~al~~Al----~~~Gp~lIeV~~~ 201 (277)
T PRK09628 181 EKLLVKGF----SHKGFSFFDVFSN 201 (277)
T ss_pred HHHHHHHH----hCCCCEEEEEcCC
Confidence 66666665 4689999999754
No 271
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=87.21 E-value=17 Score=37.42 Aligned_cols=154 Identities=19% Similarity=0.078 Sum_probs=83.8
Q ss_pred CcHHHHHHHHHHHcCC--CEEEecCCCC-----hHHHHHhhhc-CCCCeEE-eCcchHHHHHHHhHHhHhcCccEEEEeC
Q 044559 44 STLGRHLARRLVQIGA--TDVFSVPGDF-----NLTLLDHLIA-EPGLNLI-GCCNELNAGYAADGYARSRGVGACVVTF 114 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV--~~vFg~PG~~-----~~~l~~al~~-~~~i~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~ts 114 (585)
++..+++.+.|.+..- +.++.+-++- ....++.+.+ .|+-|++ ....|++++.+|.|.|....+.++....
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~ 83 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMN 83 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 5666666666666543 2344433321 1334555543 3444777 4569999999999999965455553222
Q ss_pred ChhhHHHHHHHHH--hhh-------cCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEE-eCChhh
Q 044559 115 TVGGLSVLNAIAG--AYS-------ENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAV-VNNLED 184 (585)
Q Consensus 115 GpG~~n~~~~l~~--A~~-------~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~-v~~~~~ 184 (585)
..=..-++--|.+ |+. -++||++..+.-... +.+. -|+ +.. ..+++.+..+... ..++.+
T Consensus 84 ~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~--~~G~-tHs-----~~~--ea~~~~iPgl~V~~Psd~~d 153 (327)
T CHL00144 84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGR--QLGA-EHS-----QRL--ESYFQSVPGLQIVACSTPYN 153 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCC--CCCc-ccc-----ccH--HHHHhcCCCCEEEEeCCHHH
Confidence 1112223333221 333 278988875422111 1121 121 122 3788887665433 356777
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 185 AHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 185 ~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
+..+++.|+ ..++||||.-|..+
T Consensus 154 ~~~~l~~a~----~~~~Pv~ire~~~l 176 (327)
T CHL00144 154 AKGLLKSAI----RSNNPVIFFEHVLL 176 (327)
T ss_pred HHHHHHHHH----hCCCcEEEEEcHHh
Confidence 777776655 35799999844333
No 272
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=87.20 E-value=6.3 Score=44.63 Aligned_cols=151 Identities=14% Similarity=0.174 Sum_probs=88.7
Q ss_pred CcHHHHHHHHHHHcCC--CEEEec----CCCChH-HHHHhhhcCCCCeEE-eCcchHHHHHHHhHHhHhcCc-cEEEEeC
Q 044559 44 STLGRHLARRLVQIGA--TDVFSV----PGDFNL-TLLDHLIAEPGLNLI-GCCNELNAGYAADGYARSRGV-GACVVTF 114 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV--~~vFg~----PG~~~~-~l~~al~~~~~i~~i-~~~~E~~A~~~A~Gyar~tg~-~v~~~ts 114 (585)
.+.++++.+.|.+..- +.|+.+ +|+.-+ .|.+.+ | =|++ ...-|++++.+|.|.|.. |. .++.+ .
T Consensus 356 ~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~f---P-~R~fdvGIAEq~~vg~AaGLA~~-G~kPvv~~-f 429 (677)
T PLN02582 356 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRF---P-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-Y 429 (677)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHc---C-ccccccCcCHHHHHHHHHHHHHC-CCeEEEEe-c
Confidence 4677788877777644 234443 444322 233333 2 2444 567899999999999994 55 66654 5
Q ss_pred ChhhHHHHHHH-HHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEE-EeCChhhHHHHHHHH
Q 044559 115 TVGGLSVLNAI-AGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQA-VVNNLEDAHELIDTA 192 (585)
Q Consensus 115 GpG~~n~~~~l-~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~-~v~~~~~~~~~l~~A 192 (585)
.+=+.-++.-| .++...+.||+++...... .+.+..-|| ...++.+++.+..... ...++.++..+++.|
T Consensus 430 s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~--vg~dG~TH~------~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a 501 (677)
T PLN02582 430 SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHC------GAFDVTYMACLPNMVVMAPSDEAELFHMVATA 501 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCCc--ccCCCCccc------ccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 55555566544 5556789999877543222 122112232 2344677777755433 334566666666555
Q ss_pred HHHhhhcCCcEEEEecCCC
Q 044559 193 VSTALKESKPVYISVACNL 211 (585)
Q Consensus 193 ~~~a~~~~GPV~i~iP~dv 211 (585)
+. ...|||+|..|...
T Consensus 502 l~---~~~gPv~IR~pr~~ 517 (677)
T PLN02582 502 AA---IDDRPSCFRYPRGN 517 (677)
T ss_pred Hh---CCCCCEEEEEecCC
Confidence 43 23599999999764
No 273
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=87.14 E-value=18 Score=42.23 Aligned_cols=178 Identities=16% Similarity=0.057 Sum_probs=90.1
Q ss_pred CCeEEeCcchHHHHH--HHhHHhHhc-Cc--cEEEEeCChh-hHHHHHHHHHhh-hcCCcEEEEeCCCCCcccCCccccc
Q 044559 82 GLNLIGCCNELNAGY--AADGYARSR-GV--GACVVTFTVG-GLSVLNAIAGAY-SENLPLICIVGGPNSNDYGTNRILH 154 (585)
Q Consensus 82 ~i~~i~~~~E~~A~~--~A~Gyar~t-g~--~v~~~tsGpG-~~n~~~~l~~A~-~~~~PllvI~g~~~~~~~~~~~~~~ 154 (585)
+=-+-....|+++.. +|.|-+.++ |. -.+.+|..+= +.=+.--+-.+- +..-++++++...... .+....-
T Consensus 573 gR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~t-lg~dG~T- 650 (896)
T PRK13012 573 GQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTT-LGGEGLQ- 650 (896)
T ss_pred CcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccc-cCCCCCC-
Confidence 333446778999944 555554442 33 2333444432 111222222222 2333355554332222 2221122
Q ss_pred cccCCCChhHHHhhhcceeE-EEEEeCChhhHHHHHHHHHHHhhhc--CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCC
Q 044559 155 HTIGLPDFSQELRCFQTVTC-YQAVVNNLEDAHELIDTAVSTALKE--SKPVYISVACNLPAIPHPTFSREPVPFSLSPK 231 (585)
Q Consensus 155 ~~~~~~~~~dq~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~--~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~ 231 (585)
+|...++.+++.+.. ..++..+..++...++.+++.+... .+|+||.+...-... |.... ..
T Consensus 651 -----HQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~--p~~~~-~~------- 715 (896)
T PRK13012 651 -----HQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQ--PALPE-GA------- 715 (896)
T ss_pred -----CcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCC--CCCCc-cc-------
Confidence 234456678888743 4566677788888888888765332 689999997543211 11000 00
Q ss_pred CCChhhHHHHHHHHHHHHHhcCC--CEEEcCCcccccchHHHHHHHHHHhCCce
Q 044559 232 LSNEMGLEAAVEAAAEFLNKAVK--PVLVAGPKMRVAKACNAFVELADACGYAV 283 (585)
Q Consensus 232 ~~~~~~~~~~v~~~~~~L~~a~r--pvIi~G~g~~~~~a~~~l~~lae~~~~Pv 283 (585)
...+.+-...|.+.+. -+.|+|.|..-..+.++...|++.+|+.+
T Consensus 716 -------~~~i~kG~y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a 762 (896)
T PRK13012 716 -------EEGILKGMYRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDA 762 (896)
T ss_pred -------hhccccCcEEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCe
Confidence 0011111112222222 47777877766667788888888877744
No 274
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=87.07 E-value=3.9 Score=43.68 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=59.8
Q ss_pred cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeC--Ch
Q 044559 108 GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVN--NL 182 (585)
Q Consensus 108 ~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~--~~ 182 (585)
.++++..|=|.++ ..-++.-|..-++|+|+++-+.... .+.- + ..++. ..+..+..+.+--...+|+ ++
T Consensus 224 ~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~ya-ig~~---~-~~~t~-~~dia~~A~a~G~~~~~VDG~D~ 297 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMS---H-LRATS-DPEIWKKGPAFGMPGVHVDGMDV 297 (433)
T ss_pred CEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEe-ecce---e-eeccC-CCCHHHHHHhcCCcEEEECCCCH
Confidence 5677778888766 3346777888999999998654321 1110 0 00100 1123344444433344554 45
Q ss_pred hhHHHHHHHHHHHhhhcCCcEEEEecC
Q 044559 183 EDAHELIDTAVSTALKESKPVYISVAC 209 (585)
Q Consensus 183 ~~~~~~l~~A~~~a~~~~GPV~i~iP~ 209 (585)
..+.+.+.+|++.|+...||+.|++-.
T Consensus 298 ~av~~a~~~A~~~Ar~g~gP~LIe~~t 324 (433)
T PLN02374 298 LKVREVAKEAIERARRGEGPTLVECET 324 (433)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 566788899999999889999999864
No 275
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=86.25 E-value=12 Score=37.64 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHcCCC--EEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcC-c-cEEEEeCChhhHH
Q 044559 45 TLGRHLARRLVQIGAT--DVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGLS 120 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~--~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~-~v~~~tsGpG~~n 120 (585)
..-.+|.++|.++|+. .++-+.|......+....+ .....+.|.. +.-+|.|...+.. + .+++ +|=|..-
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~~---~~~~~~~mG~-alp~AiGaklA~pd~~VVai--~GDG~~~ 91 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYIN---VNGFHTLHGR-AIPAATAVKATNPELTVIAE--GGDGDMY 91 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHcc---CCCCCccccc-HHHHHHHHHHHCCCCcEEEE--ECchHHh
Confidence 4456788888888875 3444444333333322222 2223333433 4556677666653 4 3333 3444433
Q ss_pred --HHHHHHHhhhcCCcEEEEeCCCCCcccCCcccc------cc----ccCCC-ChhHHHhhhcce-eEEEEE--eCChhh
Q 044559 121 --VLNAIAGAYSENLPLICIVGGPNSNDYGTNRIL------HH----TIGLP-DFSQELRCFQTV-TCYQAV--VNNLED 184 (585)
Q Consensus 121 --~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~------~~----~~~~~-~~~dq~~~~~~~-tk~~~~--v~~~~~ 184 (585)
.++.+..|...++||++|.-+......-.++.. .. ..+.. .-.|...+.+.+ .++..+ +.++++
T Consensus 92 ~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~ 171 (280)
T PRK11869 92 AEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEE 171 (280)
T ss_pred hCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHH
Confidence 379999999999999999877543211011000 00 00100 012444555554 223332 556666
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEec
Q 044559 185 AHELIDTAVSTALKESKPVYISVA 208 (585)
Q Consensus 185 ~~~~l~~A~~~a~~~~GPV~i~iP 208 (585)
+.+.|.+|+ ..+||++|++-
T Consensus 172 l~~~i~~Al----~~~Gp~lIeV~ 191 (280)
T PRK11869 172 TKEILKEAI----KHKGLAIVDIF 191 (280)
T ss_pred HHHHHHHHH----hCCCCEEEEEE
Confidence 655555554 56899999986
No 276
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=86.25 E-value=5.5 Score=41.25 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=60.8
Q ss_pred cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCCh--
Q 044559 108 GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNL-- 182 (585)
Q Consensus 108 ~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~-- 182 (585)
.++++..|=|+++ ..-++.-|..-++|+|+|+-+........ .+.... ..+.....+.+--...+|...
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~---~~~~~~---~~d~a~~a~a~G~~~~~Vdg~d~ 231 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMA---HHRSTS---IPEIHKKAEAFGLPGIEVDGMDV 231 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecc---hhheeC---CccHHHHHHhCCCCEEEEeCCCH
Confidence 5667777888776 23356778888999999987654221110 000110 123445555554445556544
Q ss_pred hhHHHHHHHHHHHhhhcCCcEEEEecC
Q 044559 183 EDAHELIDTAVSTALKESKPVYISVAC 209 (585)
Q Consensus 183 ~~~~~~l~~A~~~a~~~~GPV~i~iP~ 209 (585)
..+.+.+.+|++.|+...||+.|++-.
T Consensus 232 ~av~~a~~~A~~~ar~~~gP~lIev~t 258 (341)
T CHL00149 232 LAVREVAKEAVERARQGDGPTLIEALT 258 (341)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 455778899999998889999999975
No 277
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=85.67 E-value=33 Score=35.78 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=82.7
Q ss_pred CCCCCcHHHHHHHHHHHcCC--CEEEecCCCC-----hHHHHHhhh-cCCCCeEE-eCcchHHHHHHHhHHhHhcCccEE
Q 044559 40 NPSESTLGRHLARRLVQIGA--TDVFSVPGDF-----NLTLLDHLI-AEPGLNLI-GCCNELNAGYAADGYARSRGVGAC 110 (585)
Q Consensus 40 ~~~~~~~a~~i~~~L~~~GV--~~vFg~PG~~-----~~~l~~al~-~~~~i~~i-~~~~E~~A~~~A~Gyar~tg~~v~ 110 (585)
..+.++..+++.+.|.+..- +.++.+..+- .....+.+. +...=|++ ....|++++.+|.|.|....+.++
T Consensus 23 ~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v 102 (356)
T PLN02683 23 AAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVV 102 (356)
T ss_pred cccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEE
Confidence 34446777777777776643 3455544421 111122222 22123666 456999999999999997555654
Q ss_pred EEeCChhhHHHHHHHH-HhhhcC--------CcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEE-EEeC
Q 044559 111 VVTFTVGGLSVLNAIA-GAYSEN--------LPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQ-AVVN 180 (585)
Q Consensus 111 ~~tsGpG~~n~~~~l~-~A~~~~--------~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~-~~v~ 180 (585)
.....--..-++.-|. ++.+.+ .||+++..+ ... .+.+ .-|+ +. + ..+++.+.... ....
T Consensus 103 ~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~-~g~G-~tH~-----~~-~-~a~lr~iPnl~V~~Pa 172 (356)
T PLN02683 103 EFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAA-AGVG-AQHS-----QC-F-AAWYSSVPGLKVLAPY 172 (356)
T ss_pred EEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCC-CCCC-Cccc-----cC-H-HHHHhcCCCCEEEEeC
Confidence 4322212233444432 223333 899988643 221 2222 1221 22 3 58888875433 2334
Q ss_pred ChhhHHHHHHHHHHHhhhcCCcEEEEec
Q 044559 181 NLEDAHELIDTAVSTALKESKPVYISVA 208 (585)
Q Consensus 181 ~~~~~~~~l~~A~~~a~~~~GPV~i~iP 208 (585)
++.++..+++.| ...+|||+|..+
T Consensus 173 d~~e~~~~l~~a----~~~~gPv~ir~~ 196 (356)
T PLN02683 173 SSEDARGLLKAA----IRDPDPVVFLEN 196 (356)
T ss_pred CHHHHHHHHHHH----HhCCCcEEEEEe
Confidence 566666665544 445799999864
No 278
>PLN02573 pyruvate decarboxylase
Probab=85.13 E-value=2.4 Score=47.47 Aligned_cols=122 Identities=11% Similarity=-0.036 Sum_probs=70.6
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeee--eecCCCc
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEV--EIHDGPY 503 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~--~~~~~~~ 503 (585)
.+++....-.+ +.-+|-|.+.+.. ..|++++---++.-.+..|.+|...+.|+++|...-......+ .+|.
T Consensus 55 i~~i~~rhE~~---A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~--- 127 (578)
T PLN02573 55 LNLIGCCNELN---AGYAADGYARARG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH--- 127 (578)
T ss_pred ceEEEeCCHHH---HHHHHHHHHHHhC-CCeEEEecCccHHHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeee---
Confidence 44554444322 3345667776654 4444444334455568899999999999999987543221110 0010
Q ss_pred CCCCCCC---hHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 504 NVIKNWN---YTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 504 ~~~~~~d---~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.+...| ...+++.+-. ...+|++++++.+.+++|+. ....||+.|+|..|-
T Consensus 128 -~~~~~~~~~~~~~~~~itk-----~s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 128 -TIGLPDFSQELRCFQTVTC-----YQAVINNLEDAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred -ecCCCChHHHHHHhhceEE-----EEEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 001122 2345555544 67788888887766666654 224589999998874
No 279
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=84.77 E-value=21 Score=40.42 Aligned_cols=153 Identities=12% Similarity=0.138 Sum_probs=85.8
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEec----CCC-ChHHHHHhhhcCCCCeEE-eCcchHHHHHHHhHHhHhcCccEEEEeC
Q 044559 43 ESTLGRHLARRLVQIGA--TDVFSV----PGD-FNLTLLDHLIAEPGLNLI-GCCNELNAGYAADGYARSRGVGACVVTF 114 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV--~~vFg~----PG~-~~~~l~~al~~~~~i~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~ts 114 (585)
.++..+++.+.|.+..- +.|+++ +++ ....|.+.+ |+ |++ ...-|++++.+|.|.|...-+.+|.+-
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~f---Pd-RffDvGIAEQhaVt~AAGLA~~G~kPvv~iy- 454 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERF---PD-RFFNVGMAEQHAVTFSAGLSSGGLKPFCIIP- 454 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHc---cc-cccccCccHHHHHHHHHHHHHCCCEEEEEee-
Confidence 35777777777766543 344444 322 222333333 22 444 567899999999999974334666543
Q ss_pred ChhhHHHHHHHHH-hhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEE-eCChhhHHHHHHHH
Q 044559 115 TVGGLSVLNAIAG-AYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAV-VNNLEDAHELIDTA 192 (585)
Q Consensus 115 GpG~~n~~~~l~~-A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~-v~~~~~~~~~l~~A 192 (585)
.+=+.-++--|.. +...+.||.++.- +..- .+.+..-|| ....+.+++.+...... ..++.++..+++.|
T Consensus 455 stFlqRAyDQI~~Dval~~lpV~~vid-~aGl-vg~DG~TH~------g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A 526 (701)
T PLN02225 455 SAFLQRAYDQVVHDVDRQRKAVRFVIT-SAGL-VGSDGPVQC------GAFDIAFMSSLPNMIAMAPADEDELVNMVATA 526 (701)
T ss_pred hhHHHHHHHHHHHHHHhhcCCceEEEE-CCcc-CCCCCcccc------ccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 3433334444433 5567788776643 3221 222222332 22336788887654433 34556666665554
Q ss_pred HHHhhhcCCcEEEEecCCC
Q 044559 193 VSTALKESKPVYISVACNL 211 (585)
Q Consensus 193 ~~~a~~~~GPV~i~iP~dv 211 (585)
+. ...|||+|..|...
T Consensus 527 ~~---~~~gPv~IR~pRg~ 542 (701)
T PLN02225 527 AY---VTDRPVCFRFPRGS 542 (701)
T ss_pred Hh---cCCCCEEEEecccc
Confidence 42 34699999999864
No 280
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=84.67 E-value=8.2 Score=37.76 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=50.1
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccc-----ccc-----ccC-CCChhHHHhhhcceeEEEE---EeCChhhHH
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRI-----LHH-----TIG-LPDFSQELRCFQTVTCYQA---VVNNLEDAH 186 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~-----~~~-----~~~-~~~~~dq~~~~~~~tk~~~---~v~~~~~~~ 186 (585)
.+..+.++...++|+++|.-+......-.++. ..+ ..+ .....|...+.+.+--... ++.+++++.
T Consensus 103 g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~ 182 (237)
T cd02018 103 GFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFL 182 (237)
T ss_pred cHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHH
Confidence 46677777789999999988765432211110 000 000 0011345566666633333 367766665
Q ss_pred HHHHHHHHHhhh-cCCcEEEEecCCCC
Q 044559 187 ELIDTAVSTALK-ESKPVYISVACNLP 212 (585)
Q Consensus 187 ~~l~~A~~~a~~-~~GPV~i~iP~dv~ 212 (585)
..+++ |.. .+||+.|++..+..
T Consensus 183 ~al~~----al~~~~GP~lI~v~i~c~ 205 (237)
T cd02018 183 KVVKE----AISRTDGPTFIHAYTPCI 205 (237)
T ss_pred HHHHH----HHhcCCCCEEEEEeCCCC
Confidence 55554 444 68999999998763
No 281
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=83.20 E-value=6.8 Score=44.01 Aligned_cols=117 Identities=7% Similarity=-0.102 Sum_probs=66.7
Q ss_pred HHHHhHHhHhcC-ccEEEEeCChhhHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCcccccc----ccC-CCChhHHHh
Q 044559 95 GYAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHH----TIG-LPDFSQELR 167 (585)
Q Consensus 95 ~~~A~Gyar~tg-~~v~~~tsGpG~~n-~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~----~~~-~~~~~dq~~ 167 (585)
.-+|.|.+.+.. +-|+.++.--++.. .+..|..|...++|+++|.-+......-.++.... ..+ .....|...
T Consensus 409 ~~~AiGa~~a~p~~~Vv~i~GDG~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ 488 (595)
T TIGR03336 409 IGVASGLSKAGEKQRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEE 488 (595)
T ss_pred HHHHhhhhhcCCCCCEEEEeccchhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHH
Confidence 335666665543 33333333334443 48999999999999999987765432211110000 000 001134566
Q ss_pred hhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 044559 168 CFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLP 212 (585)
Q Consensus 168 ~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~ 212 (585)
+.+.+--...++.+++++. .+..|++.+...+||..|.+..+-.
T Consensus 489 ia~a~G~~~~~v~~~~~l~-~l~~al~~a~~~~gp~li~v~~~C~ 532 (595)
T TIGR03336 489 LCRASGVEFVEVVDPLNVK-ETIEVFKAALAAEGVSVIIAKQPCV 532 (595)
T ss_pred HHHHcCCCEEEEeCcCCHH-HHHHHHHHHHhcCCCEEEEEcccCc
Confidence 7777755667777776543 2455555665668999999987653
No 282
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=82.91 E-value=7.7 Score=36.03 Aligned_cols=104 Identities=14% Similarity=0.024 Sum_probs=60.9
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcc-----cHHHHH-HHHHhCCceEEEEEeCCc-ceeeeeecCCCcCCCCCCChH
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQV-----TAQDVS-TMLRCGQKTIIFLINNGG-YTIEVEIHDGPYNVIKNWNYT 512 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~-----~~~eL~-ta~~~~lpv~ivV~NN~~-~~~~~~~~~~~~~~~~~~d~~ 512 (585)
.++.|.|++++.+-+ .+...-=+.|+. ....+. .....++|+. |+..-+. ++. +| ..-...+..
T Consensus 60 ~vg~a~GlA~~G~~~-~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~-----~G--~tH~s~~d~ 130 (178)
T PF02779_consen 60 MVGMAAGLALAGGLR-PPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGG-----DG--GTHHSIEDE 130 (178)
T ss_dssp HHHHHHHHHHHSSSE-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGST-----TG--TTTSSSSHH
T ss_pred ccceeeeeeeccccc-ceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccc-----cc--ccccccccc
Confidence 467888888874312 333333445555 222232 3456788988 5554332 322 11 111345666
Q ss_pred HHHHHh-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEE
Q 044559 513 GLVDAI-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVL 557 (585)
Q Consensus 513 ~la~a~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~ 557 (585)
.+.+++ |+ +.+...++.|+..+++.+++.+.++|++|-..
T Consensus 131 ~~~~~iPg~-----~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 131 AILRSIPGM-----KVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HHHHTSTTE-----EEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred ccccccccc-----ccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 666666 65 88888999999999999984225689988554
No 283
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=82.16 E-value=15 Score=40.92 Aligned_cols=122 Identities=14% Similarity=0.050 Sum_probs=71.7
Q ss_pred CeEEeCcchH---HHHHHHhHHhHhcCc-cEEEEeCChhhHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCC----cc--
Q 044559 83 LNLIGCCNEL---NAGYAADGYARSRGV-GACVVTFTVGGLS-VLNAIAGAYSENLPLICIVGGPNSNDYGT----NR-- 151 (585)
Q Consensus 83 i~~i~~~~E~---~A~~~A~Gyar~tg~-~v~~~tsGpG~~n-~~~~l~~A~~~~~PllvI~g~~~~~~~~~----~~-- 151 (585)
.+++..+.-. .+.-+|.|++.+.++ .+|++ |=|... .++.+..|...++|+++|.-+........ .+
T Consensus 416 ~~~~~~~g~~~~G~~lpaaiGaala~~~~vv~i~--GDGsf~~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~ 493 (568)
T PRK07449 416 YPVYSNRGASGIDGLLSTAAGVARASAKPTVALI--GDLSFLHDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEE 493 (568)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEe--chHHhhcCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCc
Confidence 5566544322 255678888877555 44443 444333 35788889999999999987765421100 00
Q ss_pred -ccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 152 -ILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 152 -~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
...+.++.....|..++.+.+-...+++.+++++...+++|+ ..+||+.|++..|
T Consensus 494 ~~~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~----~~~~p~lIev~id 549 (568)
T PRK07449 494 PVFERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADAL----PTPGLTVIEVKTN 549 (568)
T ss_pred chhhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHh----cCCCCEEEEEeCC
Confidence 000011111112445566666555678888887766666654 4579999999876
No 284
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=81.90 E-value=6.4 Score=43.59 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=54.1
Q ss_pred cccccchhHHHHhhhh-----------cCCCCcEEEEEccchhcc--cHHHHHHHHHhCCceEEEEEeCCcceeeeeecC
Q 044559 434 YGSIGWSVGATLGYAQ-----------SVPEKRVIACIGDGSFQV--TAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD 500 (585)
Q Consensus 434 ~g~mG~~lpaAiGaal-----------A~p~r~vv~v~GDGsf~~--~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~ 500 (585)
.++||-|.-.||=.+. ..++++|+||.|||-+=- +...|.-|.+++|.-+|+|+|=+--.. +
T Consensus 191 TvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrL-----D 265 (887)
T COG2609 191 TVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRL-----D 265 (887)
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhc-----C
Confidence 4677777777775543 145789999999998644 456688889999988888888552211 3
Q ss_pred CCcCCCC--CCChHHHHHHhcC
Q 044559 501 GPYNVIK--NWNYTGLVDAIHN 520 (585)
Q Consensus 501 ~~~~~~~--~~d~~~la~a~G~ 520 (585)
++...-. --.|..+.++.|+
T Consensus 266 gpVrgngkiiqelE~~FrgAGW 287 (887)
T COG2609 266 GPVRGNGKIIQELEGIFRGAGW 287 (887)
T ss_pred CcccCCchhHHHHHHHhccCCc
Confidence 3321110 1246677777776
No 285
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=81.72 E-value=18 Score=35.33 Aligned_cols=94 Identities=17% Similarity=0.115 Sum_probs=54.3
Q ss_pred CChhhH--HHHHHHHHhhhcCCcEEEEeCCCCCcccCCcc--cc----cc----ccCC------CChhHHHhhhcce-eE
Q 044559 114 FTVGGL--SVLNAIAGAYSENLPLICIVGGPNSNDYGTNR--IL----HH----TIGL------PDFSQELRCFQTV-TC 174 (585)
Q Consensus 114 sGpG~~--n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~--~~----~~----~~~~------~~~~dq~~~~~~~-tk 174 (585)
.|=|.. -.+..|..|...++|+++|.-+......-..+ .. .. ..+. ....|...+.+.+ .+
T Consensus 87 ~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~ 166 (235)
T cd03376 87 AGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIP 166 (235)
T ss_pred EcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCc
Confidence 344442 34678999999999999998876543210000 00 00 0000 0112445566665 33
Q ss_pred E--EEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 175 Y--QAVVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 175 ~--~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
+ ..++.+++++.+.+++|+ ..+||+.|++..+=
T Consensus 167 ~~~~~~v~~~~el~~al~~a~----~~~gP~lIev~~~C 201 (235)
T cd03376 167 YVATASVAYPEDLYKKVKKAL----SIEGPAYIHILSPC 201 (235)
T ss_pred EEEEEcCCCHHHHHHHHHHHH----hCCCCEEEEEECCC
Confidence 3 246778777766666655 45799999998664
No 286
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=80.50 E-value=14 Score=37.11 Aligned_cols=151 Identities=17% Similarity=0.061 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCC--EEEecCCCChHHHHHhhhcCCC---CeEEeCcchHHHHHHHhHHhHhcC-c-cEEEEeCChhh
Q 044559 46 LGRHLARRLVQIGAT--DVFSVPGDFNLTLLDHLIAEPG---LNLIGCCNELNAGYAADGYARSRG-V-GACVVTFTVGG 118 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~--~vFg~PG~~~~~l~~al~~~~~---i~~i~~~~E~~A~~~A~Gyar~tg-~-~v~~~tsGpG~ 118 (585)
.-.+|.++|.+.|+. ...-+.|..... +.+. .....+.| ..|.-+|.|...+.- + .+++ .|=|.
T Consensus 12 i~~~~~~a~~~l~~~p~d~iivsdiGc~~------~~~~~l~~~~~~t~m-G~alPaAiGaklA~Pd~~VVai--~GDG~ 82 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVVSGIGCSA------KTPHYVNVNGFHGLH-GRALPVATGIKLANPHLKVIVV--GGDGD 82 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCccc------ccCCeEecCCccccc-ccHHHHHHHHHHHCCCCcEEEE--eCchH
Confidence 346778888888873 222222222111 1111 11222333 556778888777753 4 4444 34444
Q ss_pred H--HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccc------cc----cCC---CChhHHHhhhcceeEEEEE-eCCh
Q 044559 119 L--SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILH------HT----IGL---PDFSQELRCFQTVTCYQAV-VNNL 182 (585)
Q Consensus 119 ~--n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~------~~----~~~---~~~~dq~~~~~~~tk~~~~-v~~~ 182 (585)
. -.++.+..|...++|+++|.-+......-+++... .. .+. ..-.+.+.+...+...... +.++
T Consensus 83 f~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~ 162 (287)
T TIGR02177 83 LYGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDV 162 (287)
T ss_pred HHhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCH
Confidence 2 34677999999999999998764432111110000 00 000 0012345556565433332 3666
Q ss_pred hhHHHHHHHHHHHhhhcCCcEEEEecC
Q 044559 183 EDAHELIDTAVSTALKESKPVYISVAC 209 (585)
Q Consensus 183 ~~~~~~l~~A~~~a~~~~GPV~i~iP~ 209 (585)
+++.+.|++| ...+||++|++..
T Consensus 163 ~eL~~ai~~A----l~~~GpslIeV~~ 185 (287)
T TIGR02177 163 AHLKEIIKEA----INHKGYALVDILQ 185 (287)
T ss_pred HHHHHHHHHH----HhCCCCEEEEEeC
Confidence 6665555554 5568999999874
No 287
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=80.49 E-value=2.8 Score=42.56 Aligned_cols=45 Identities=31% Similarity=0.388 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCce
Q 044559 238 LEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAV 283 (585)
Q Consensus 238 ~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv 283 (585)
-++++++|++.|.+||||+++-+... .-++.+.-.+|+|++|+-+
T Consensus 65 ~deAie~Aa~ILv~aKrPllyg~s~t-scEA~~~gielaE~~gavi 109 (429)
T COG1029 65 YDEAIEKAAEILVNAKRPLLYGWSST-SCEAQELGIELAEKLGAVI 109 (429)
T ss_pred HHHHHHHHHHHHHhccCceEeccccc-hHHHHHHHHHHHHHhCcEe
Confidence 46789999999999999999966544 3478888899999999865
No 288
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=80.25 E-value=10 Score=37.69 Aligned_cols=85 Identities=16% Similarity=0.082 Sum_probs=57.3
Q ss_pred cEEEEEccchhccc--HH-H-HHHHHHhCCceEEEEEeCCc--ceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeE
Q 044559 455 RVIACIGDGSFQVT--AQ-D-VSTMLRCGQKTIIFLINNGG--YTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTT 528 (585)
Q Consensus 455 ~vv~v~GDGsf~~~--~~-e-L~ta~~~~lpv~ivV~NN~~--~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~ 528 (585)
+++.++-||.+.++ .. . +..+.+.++-+.+|+++|.. -.+.... .-.|..-.......+.++|+.. .|+
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~-~~~~~~~~~~~l~~Yl~~fpfp----Yy~ 240 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIK-VVSFKNDKSGVITPYLDEFPFP----YYV 240 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCccccc-ccccCCCCccHHHHHHhcCCCC----eEE
Confidence 79999999996554 22 2 45556789999999999973 2332110 0012111112778899999994 566
Q ss_pred EEcCHHHHHHHHHhhc
Q 044559 529 KVFCEEELIEAIENAT 544 (585)
Q Consensus 529 ~V~~~~eL~~aL~~a~ 544 (585)
-|.+.++|..+|..++
T Consensus 241 ~~~~~~~lp~~l~~~l 256 (266)
T cd01460 241 IVRDLNQLPSVLSDAL 256 (266)
T ss_pred EecChhHhHHHHHHHH
Confidence 7899999998887665
No 289
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=79.88 E-value=63 Score=33.25 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=79.4
Q ss_pred CcHHHHHHHHHHHcCC--CEEEecCCCC-----hHHHHHhhhc-CCCCeEE-eCcchHHHHHHHhHHhHhcCccEEEEeC
Q 044559 44 STLGRHLARRLVQIGA--TDVFSVPGDF-----NLTLLDHLIA-EPGLNLI-GCCNELNAGYAADGYARSRGVGACVVTF 114 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV--~~vFg~PG~~-----~~~l~~al~~-~~~i~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~ts 114 (585)
++..+++.+.|.+..- +.++.+..+- ...+.+.+.+ .+.=|++ ....|++++.+|.|.|....+.+|...+
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~~ 83 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFMT 83 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEeeh
Confidence 4566666666655532 2344433321 1111233322 2112566 4569999999999999954446655332
Q ss_pred ChhhHHHHHHHH-H-hhh-------cCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEE-EeCChhh
Q 044559 115 TVGGLSVLNAIA-G-AYS-------ENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQA-VVNNLED 184 (585)
Q Consensus 115 GpG~~n~~~~l~-~-A~~-------~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~-~v~~~~~ 184 (585)
..-..-++.-|. + |+. -++||++...+-.....|. -|+ +..+ .+++.+..... ...++.+
T Consensus 84 ~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~---tH~-----~~~e--a~~r~iP~l~V~~P~d~~e 153 (327)
T PRK09212 84 FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAA---QHS-----QCYA--AWYSHIPGLKVVAPYFAAD 153 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCc---ccc-----cCHH--HHHhcCCCCEEEeeCCHHH
Confidence 111222322221 1 233 2689888765422221111 121 2222 77777754333 3356677
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 185 AHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 185 ~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
+..+++.|++ ..+||+|..|...
T Consensus 154 ~~~~l~~a~~----~~~Pv~i~~~~~~ 176 (327)
T PRK09212 154 CKGLLKTAIR----DPNPVIFLENEIL 176 (327)
T ss_pred HHHHHHHHHh----CCCcEEEEEchhh
Confidence 7777766553 4799999766543
No 290
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=79.52 E-value=1.2e+02 Score=35.54 Aligned_cols=183 Identities=15% Similarity=0.082 Sum_probs=103.6
Q ss_pred CCCeEEeCcchHHHHH--HHhHHhHhc-Cc--cEEEEeCChhh-HHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccc
Q 044559 81 PGLNLIGCCNELNAGY--AADGYARSR-GV--GACVVTFTVGG-LSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILH 154 (585)
Q Consensus 81 ~~i~~i~~~~E~~A~~--~A~Gyar~t-g~--~v~~~tsGpG~-~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~ 154 (585)
++=-+-....|++++. +|.|.|..+ |+ -.+.++..+=+ .=+.--+-.+-+.+.++.+|.+.......+....-|
T Consensus 559 p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tH 638 (889)
T TIGR03186 559 DGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQH 638 (889)
T ss_pred CCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCcccc
Confidence 3433446779999997 888877763 44 33444555532 335556666667788888887766552233222222
Q ss_pred cccCCCChhHHHhhhcceeE-EEEEeCChhhHHHHHHHHHHHhhhc--CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCC
Q 044559 155 HTIGLPDFSQELRCFQTVTC-YQAVVNNLEDAHELIDTAVSTALKE--SKPVYISVACNLPAIPHPTFSREPVPFSLSPK 231 (585)
Q Consensus 155 ~~~~~~~~~dq~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~--~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~ 231 (585)
|....+.+++.+.. -.+...++.++..+++.+++.+... .||+||.+...-... |...... . ...
T Consensus 639 ------q~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~--p~~~~~~--~--~~~ 706 (889)
T TIGR03186 639 ------QDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQ--PSLPEDR--L--DAV 706 (889)
T ss_pred ------cchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCC--CCcCCCc--c--cch
Confidence 23344677777643 3456677888889999999866553 599999998653111 1110000 0 000
Q ss_pred CCChhhHHHHHHHHHHHHHhc---CCCEEEcCCcccccchHHHHHHHHHHhCCc
Q 044559 232 LSNEMGLEAAVEAAAEFLNKA---VKPVLVAGPKMRVAKACNAFVELADACGYA 282 (585)
Q Consensus 232 ~~~~~~~~~~v~~~~~~L~~a---~rpvIi~G~g~~~~~a~~~l~~lae~~~~P 282 (585)
...+-+....|... ..-+.|+|.|..-.++.++...|++.+|+-
T Consensus 707 -------~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~ 753 (889)
T TIGR03186 707 -------RRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGID 753 (889)
T ss_pred -------hcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCC
Confidence 00010111223321 123667777776667778888888876654
No 291
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=79.14 E-value=16 Score=38.11 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=62.5
Q ss_pred HHHHHHHhHHhHhcCc-cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHh
Q 044559 92 LNAGYAADGYARSRGV-GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR 167 (585)
Q Consensus 92 ~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~ 167 (585)
..|+.+|.+. |..|. .++++..|=|++| ..-++--|..-+.|+|+|+=+.... .+... .... . ..+...
T Consensus 145 p~A~G~A~A~-k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~a-ist~~--~~~~--~-~~~~~~ 217 (362)
T PLN02269 145 PLGAGLAFAQ-KYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYG-MGTAE--WRAA--K-SPAYYK 217 (362)
T ss_pred cHHHHHHHHH-HHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEe-ccCch--hhhc--c-chHHHH
Confidence 3445555543 33344 7777777877655 4556666778899999998664322 11100 0000 0 000000
Q ss_pred hhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecC
Q 044559 168 CFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVAC 209 (585)
Q Consensus 168 ~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~ 209 (585)
....+.-....=.++..+.+.+.+|++.++. .||+.|++-.
T Consensus 218 ~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~t 258 (362)
T PLN02269 218 RGDYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDT 258 (362)
T ss_pred hhcCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence 0111222333445677888888999988888 8999999853
No 292
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=78.51 E-value=15 Score=34.75 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=64.3
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHH--HHHhhh-----cCCCCeEEeCcchHHHHH-HH--hHHh----H---hcC
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLT--LLDHLI-----AEPGLNLIGCCNELNAGY-AA--DGYA----R---SRG 106 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~--l~~al~-----~~~~i~~i~~~~E~~A~~-~A--~Gya----r---~tg 106 (585)
...++.|++.|.+.|-=++||+-|+.... +...|. .+++++.+....+..-.. .| .||. | ...
T Consensus 28 ~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~ 107 (196)
T PRK10886 28 SRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALG 107 (196)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcC
Confidence 35678888889888988999998875433 332231 135677774433332211 11 2222 2 222
Q ss_pred c--cEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 044559 107 V--GACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 107 ~--~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
+ =++++-|+.| ..|++.++.-|...+.|+|.||+.....
T Consensus 108 ~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 2 3555555665 5578899999999999999999976544
No 293
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=78.19 E-value=5.2 Score=50.45 Aligned_cols=117 Identities=11% Similarity=0.045 Sum_probs=76.5
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcc-cHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQV-TAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~-~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+-| -+|.|.+.+. ++++||++-=|.-.. .+..+.+|..-+.|+++|..+-...... .+
T Consensus 340 i~~i~~rhErsAa---fmAdGyAR~T-gkpgV~i~TsGPG~tN~l~av~eA~~d~vPlLvItgd~p~~~~~----~g--- 408 (1655)
T PLN02980 340 TTCIACFDERSLA---FHALGYARGS-LKPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELQD----AG--- 408 (1655)
T ss_pred CeEEeccCcchHH---HHHHHHHHHh-CCCEEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhc----CC---
Confidence 4455544433333 4788887764 678888776664444 5889999999999999998764433221 11
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHH------HHHHHhhcC---CCCCCeEEEEEEc
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEEL------IEAIENATG---PKKDCLCFIEVLV 558 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL------~~aL~~a~~---~~~~gp~vIeV~v 558 (585)
.+..+|-..+++.+-- ..++|.+++++ ..++++|+. ....||+.|+|..
T Consensus 409 a~Q~iDq~~lf~pvtK-----~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 409 ANQAINQVNHFGSFVR-----FFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred CCcccchhhHHHhhhh-----eeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 1344677788888876 77888777662 244444443 2346999999994
No 294
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=77.66 E-value=15 Score=39.72 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=59.2
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHHH----HHHH--------HhCCceEEEEEeCCcceeeeeecCCCcCCCC
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDV----STML--------RCGQKTIIFLINNGGYTIEVEIHDGPYNVIK 507 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL----~ta~--------~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~ 507 (585)
.++.|.|++++ .-||++.+. ++.|....+ ..+. +.++|++++- -|+++.. .|. -+
T Consensus 201 ~vg~AaGlA~~-G~rPiv~~~---~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g-~~G~~~~-----~G~---hh 267 (464)
T PRK11892 201 FAGIGVGAAFA-GLKPIVEFM---TFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRG-PNGAAAR-----VAA---QH 267 (464)
T ss_pred HHHHHHHHHhC-CCEEEEEEe---hHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEe-cCCCCCC-----CCC---cc
Confidence 45677777775 345665432 122222222 2233 6789988864 4554421 111 13
Q ss_pred CCChHHHHHHh-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEE
Q 044559 508 NWNYTGLVDAI-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFI 554 (585)
Q Consensus 508 ~~d~~~la~a~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vI 554 (585)
..++..+.+.+ |. +.+...+..|+..+|+.+++ .++|++|
T Consensus 268 s~~d~a~~~~iPgl-----~V~~P~d~~d~~~ll~~ai~--~~~Pv~i 308 (464)
T PRK11892 268 SQDYAAWYSHIPGL-----KVVAPYSAADAKGLLKAAIR--DPNPVIF 308 (464)
T ss_pred ccCHHHHHhhCCCC-----EEEEeCCHHHHHHHHHHHhh--CCCcEEE
Confidence 45667777777 55 78888999999999999986 7789887
No 295
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=77.19 E-value=93 Score=35.19 Aligned_cols=152 Identities=12% Similarity=0.121 Sum_probs=84.4
Q ss_pred CcHHHHHHHHHHHcCCC--EEEe----cCCCChHHHHHhhh-cCCCCeEE-eCcchHHHHHHHhHHhHhcCccEEEEeCC
Q 044559 44 STLGRHLARRLVQIGAT--DVFS----VPGDFNLTLLDHLI-AEPGLNLI-GCCNELNAGYAADGYARSRGVGACVVTFT 115 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~--~vFg----~PG~~~~~l~~al~-~~~~i~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~tsG 115 (585)
++..+++.+.|.+..-+ .|+. ++|+... +.+. +.| =|++ ...-|++++.+|.|.|...-+.+|.+ ..
T Consensus 357 ~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~---~~f~~~fP-dR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~-fs 431 (641)
T PLN02234 357 QSYTSCFVEALIAEAEADKDIVAIHAAMGGGTML---NLFESRFP-TRCFDVGIAEQHAVTFAAGLACEGLKPFCTI-YS 431 (641)
T ss_pred CCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcch---HHHHHHcc-ccccCCCcCHHHHHHHHHHHHHCCCeEEEEe-hH
Confidence 67788888887766543 2322 3343322 3332 122 2444 45689999999999999533466654 44
Q ss_pred hhhHHHHHHHH-HhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEE-EEeCChhhHHHHHHHHH
Q 044559 116 VGGLSVLNAIA-GAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQ-AVVNNLEDAHELIDTAV 193 (585)
Q Consensus 116 pG~~n~~~~l~-~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~ 193 (585)
+=+.-++.-|. ++...+.|++++.-. ... .+.+..-|| ...+..+++.+.... ....++.++..+++.|+
T Consensus 432 ~Fl~RA~DQI~~dva~~~lpV~~v~~~-aG~-~g~dG~TH~------~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~ 503 (641)
T PLN02234 432 SFMQRAYDQVVHDVDLQKLPVRFAIDR-AGL-MGADGPTHC------GAFDVTFMACLPNMIVMAPSDEAELFNMVATAA 503 (641)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeC-Ccc-CCCCCcccc------ccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 43334444442 446789999877522 221 122222232 223466766664433 22345555555554433
Q ss_pred HHhhhcCCcEEEEecCCC
Q 044559 194 STALKESKPVYISVACNL 211 (585)
Q Consensus 194 ~~a~~~~GPV~i~iP~dv 211 (585)
. ...+||+|..|...
T Consensus 504 ~---~~~~Pv~ir~~R~~ 518 (641)
T PLN02234 504 A---IDDRPSCFRYHRGN 518 (641)
T ss_pred h---CCCCCEEEEeeccc
Confidence 2 23699999999764
No 296
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=76.68 E-value=19 Score=36.51 Aligned_cols=123 Identities=16% Similarity=0.060 Sum_probs=63.7
Q ss_pred CCeEEeCcchHHHHHHHhHHhHh---cCc--cEEEEeCChhhHH--HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccc
Q 044559 82 GLNLIGCCNELNAGYAADGYARS---RGV--GACVVTFTVGGLS--VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILH 154 (585)
Q Consensus 82 ~i~~i~~~~E~~A~~~A~Gyar~---tg~--~v~~~tsGpG~~n--~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~ 154 (585)
++.++.+.++.+++.+ .|.+++ .|+ ..+++..|=|.+. .+.++..|...+.|+++|.=+...... ++...+
T Consensus 63 ~~~~i~~~~G~~~~~A-~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~-TGgQ~S 140 (300)
T PRK11864 63 TVPVLHTAFAATAAVA-SGIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMN-TGIQRS 140 (300)
T ss_pred cccceeehhhChHHHH-HHHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeec-CCCCCC
Confidence 4666777777765543 344443 222 2333345555432 468999999999999999876433211 110000
Q ss_pred c-----------ccCCC-ChhHHHhhhcce-eEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEec
Q 044559 155 H-----------TIGLP-DFSQELRCFQTV-TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVA 208 (585)
Q Consensus 155 ~-----------~~~~~-~~~dq~~~~~~~-tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP 208 (585)
- ..|.. .-.|...++..+ ..|..++... + +..+.++++.|...+||.+|.+=
T Consensus 141 ~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~-~-~~~~~~~i~~A~~~~Gps~I~~~ 205 (300)
T PRK11864 141 SSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIA-Y-PEDFIRKLKKAKEIRGFKFIHLL 205 (300)
T ss_pred CCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCC-C-HHHHHHHHHHHHhCCCCEEEEEe
Confidence 0 00000 011333444433 3355544421 2 23345566666667899999875
No 297
>PRK13936 phosphoheptose isomerase; Provisional
Probab=76.62 E-value=24 Score=33.37 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHH--HHHhhh-----cCCCCeEEeCcchHHHH---HHHhHH--------hHhcC
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLT--LLDHLI-----AEPGLNLIGCCNELNAG---YAADGY--------ARSRG 106 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~--l~~al~-----~~~~i~~i~~~~E~~A~---~~A~Gy--------ar~tg 106 (585)
..++.+++.|.+.|.=++||+-++.... +...+. ...+++.+......... .--.++ +....
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 5678889999999999999998775433 333333 12456665543222221 100111 11122
Q ss_pred c-cEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCCC
Q 044559 107 V-GACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPNS 144 (585)
Q Consensus 107 ~-~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 144 (585)
. =+++.-|..| ..+.+..+..|...+.|+|.||+....
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s 150 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGG 150 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3 3444444444 455888899999999999999987543
No 298
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=76.29 E-value=9.6 Score=42.25 Aligned_cols=108 Identities=10% Similarity=0.029 Sum_probs=63.0
Q ss_pred hHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeee--eecCCCcCCCCCCChH---HHH
Q 044559 441 VGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEV--EIHDGPYNVIKNWNYT---GLV 515 (585)
Q Consensus 441 lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~--~~~~~~~~~~~~~d~~---~la 515 (585)
.-+|-|.+.+.. .-|++++=.-++...+..|.+|-..+.|+++|...-......+ .++. .+..-+|. +++
T Consensus 52 ~~mAdgyar~tg-~gv~~~t~GPG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~----~~~~~~~q~~~~~~ 126 (539)
T TIGR03393 52 AYAADGYARCKG-AAALLTTFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHH----TLGDGDFRHFYRMA 126 (539)
T ss_pred HHHhhhhhhhcC-ceEEEEecCccHHHHhhHHHHHhhccCCEEEEECCCCcchhhcCceeee----ecCCCchHHHHHHh
Confidence 356677776654 4444444344555567899999999999999987544322211 1110 01111233 333
Q ss_pred HHhcCCCCCceeEEE--cC-HHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 516 DAIHNGEGKCWTTKV--FC-EEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 516 ~a~G~~~~~~~~~~V--~~-~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+.+-. ....+ ++ ++.+.++++.|+. ..||+.|||..|-
T Consensus 127 ~~itk-----~~~~~~~~~~~~~i~~a~~~A~~--~~gPv~l~iP~Dv 167 (539)
T TIGR03393 127 AEVTV-----AQAVLTEQNATAEIDRVITTALR--ERRPGYLMLPVDV 167 (539)
T ss_pred hceEE-----EEEEeChhhhHHHHHHHHHHHHh--cCCCEEEEecccc
Confidence 33321 22222 34 6778888888885 5689999999874
No 299
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=75.56 E-value=17 Score=36.60 Aligned_cols=159 Identities=14% Similarity=0.031 Sum_probs=79.6
Q ss_pred cHHHHHHHHHHHcCCC--EEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcC-c-cEEEEeCChhhHH
Q 044559 45 TLGRHLARRLVQIGAT--DVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGLS 120 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~--~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~-~v~~~tsGpG~~n 120 (585)
..-..|.+.|.+.|++ .+..+-|......+-.... ...+...| .-+.-+|.|.+.+.. + .++++-=|-+..-
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~~~~~---~~~~~g~m-G~alpaAiGaklA~Pd~~VV~i~GDG~~f~m 102 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVVSGIGCSGRLPGYIN---TYGFHTIH-GRALAIATGLKLANPDLTVIVVTGDGDALAI 102 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCccccccCcccc---ccchhhhh-hcHHHHHHHHHHhCCCCcEEEEeCccHHHhC
Confidence 3556778888888764 2222233222221111111 11222333 445667788777753 3 4444333323444
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCcccc------cc----ccCCCC-hhHHHhhhccee-EEEE--EeCChhhHH
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRIL------HH----TIGLPD-FSQELRCFQTVT-CYQA--VVNNLEDAH 186 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~------~~----~~~~~~-~~dq~~~~~~~t-k~~~--~v~~~~~~~ 186 (585)
.++.+..|...++|+++|.-+......-+++.. .+ ..+..+ -.+...+...+- .+.. .+.+++++.
T Consensus 103 g~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~ 182 (286)
T PRK11867 103 GGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLT 182 (286)
T ss_pred CHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHH
Confidence 567899999999999999876543211111000 00 011000 023344444432 1222 345566665
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 187 ELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 187 ~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
..|++| ...+||++|++-.+=
T Consensus 183 ~al~~A----l~~~Gp~lIev~~~C 203 (286)
T PRK11867 183 ELIKAA----INHKGFSFVEILQPC 203 (286)
T ss_pred HHHHHH----HhCCCCEEEEEeCCC
Confidence 555555 456899999998553
No 300
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=74.59 E-value=23 Score=36.99 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=58.1
Q ss_pred chhHHHHhhhhcCCCCcEEEEEccchhccc-HHHH-HHHHHhC--------CceEEEEEeCCcceeeeeecCCCcCCCCC
Q 044559 439 WSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQDV-STMLRCG--------QKTIIFLINNGGYTIEVEIHDGPYNVIKN 508 (585)
Q Consensus 439 ~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~eL-~ta~~~~--------lpv~ivV~NN~~~~~~~~~~~~~~~~~~~ 508 (585)
..++.|.|.+++ ..+|++.+.. ..|++- ...| ..+...+ +||+++..+ +++.- .|. .+.
T Consensus 85 ~~vg~AaGlA~~-G~~P~v~~~~-~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g-----~G~---tH~ 153 (356)
T PLN02683 85 GFTGIGVGAAYA-GLKPVVEFMT-FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAG-----VGA---QHS 153 (356)
T ss_pred HHHHHHHHHHHC-CCEEEEEEeh-hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCC-----CCC---ccc
Confidence 456788888875 3455654321 123332 2223 3334344 898887544 43211 111 121
Q ss_pred CChHHHHHHh-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEE
Q 044559 509 WNYTGLVDAI-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIE 555 (585)
Q Consensus 509 ~d~~~la~a~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIe 555 (585)
-.+..+.+++ |. +.+...+..|+..+++.+++ .++|++|-
T Consensus 154 ~~~~a~lr~iPnl-----~V~~Pad~~e~~~~l~~a~~--~~gPv~ir 194 (356)
T PLN02683 154 QCFAAWYSSVPGL-----KVLAPYSSEDARGLLKAAIR--DPDPVVFL 194 (356)
T ss_pred cCHHHHHhcCCCC-----EEEEeCCHHHHHHHHHHHHh--CCCcEEEE
Confidence 2234666665 55 78888999999999999986 67898884
No 301
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=73.73 E-value=8 Score=33.96 Aligned_cols=97 Identities=10% Similarity=0.114 Sum_probs=63.0
Q ss_pred HHHHhhhhcCCCCcEEEEEccchhcccHHHHHHH-HHhCCceEEEEEeCCccee--eeeecCCCcCCCCCCChHHHHHHh
Q 044559 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTM-LRCGQKTIIFLINNGGYTI--EVEIHDGPYNVIKNWNYTGLVDAI 518 (585)
Q Consensus 442 paAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta-~~~~lpv~ivV~NN~~~~~--~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+-+.|+.+|. ++ ...+.-..+..-+++.|... +-|++|+.+++---|.+.- ..|.. ..--..++-+.+
T Consensus 56 GIcAGa~lAG-kk-~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVp-------mGr~~~kiLe~~ 126 (172)
T COG4032 56 GICAGAYLAG-KK-PAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVP-------MGRALPKILEGL 126 (172)
T ss_pred eeehhhhhcC-CC-cEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccc-------cchhhHHHHhhc
Confidence 4456788873 34 44566677788888988766 5699998887755554432 11110 123467889999
Q ss_pred cCCCCCceeEEEcCHHHHHHHH----HhhcCCCCCCeEEE
Q 044559 519 HNGEGKCWTTKVFCEEELIEAI----ENATGPKKDCLCFI 554 (585)
Q Consensus 519 G~~~~~~~~~~V~~~~eL~~aL----~~a~~~~~~gp~vI 554 (585)
+. +.+++.+++|-.+.+ ..+++ ..+|+.+
T Consensus 127 ~l-----pt~t~~~p~Ea~~li~~~~~~a~~--~s~pv~v 159 (172)
T COG4032 127 EL-----PTYTIIGPEEALPLIENAILDAFE--NSRPVAV 159 (172)
T ss_pred CC-----cccccCCHHHHHHHHHHHHHHHHH--cCCceEE
Confidence 98 899999998844444 44443 5667554
No 302
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=73.71 E-value=30 Score=32.52 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=62.1
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHh--hh-----cCCCCeEEeCcchHHHH-----------HHHhHHhHhc
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDH--LI-----AEPGLNLIGCCNELNAG-----------YAADGYARSR 105 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~a--l~-----~~~~i~~i~~~~E~~A~-----------~~A~Gyar~t 105 (585)
...++.|.+.|.+.|-=++||+-++......-+ +. ...++..+.. .+.+.. .++.-.+..-
T Consensus 31 ~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~ 109 (192)
T PRK00414 31 QRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSNDFGYDYVFSRYVEAVG 109 (192)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhhhccCCHHHHHHHHHHHhC
Confidence 356777888888889999999987765433332 21 1245665554 332211 1111112112
Q ss_pred Cc-cEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCCC
Q 044559 106 GV-GACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPNS 144 (585)
Q Consensus 106 g~-~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 144 (585)
.. -++++.|..| ..+.+.++..|...++|+|.||+....
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s 150 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGG 150 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 23 4666666666 456888999999999999999997544
No 303
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=73.37 E-value=34 Score=34.64 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=50.6
Q ss_pred HcCCCEEEecCCCChHHHHHhhh-cCC-CCeEEeCcchHHHHHHHhHHhHhc---Cc-cEEEEeCChhh--HHHHHHHHH
Q 044559 56 QIGATDVFSVPGDFNLTLLDHLI-AEP-GLNLIGCCNELNAGYAADGYARSR---GV-GACVVTFTVGG--LSVLNAIAG 127 (585)
Q Consensus 56 ~~GV~~vFg~PG~~~~~l~~al~-~~~-~i~~i~~~~E~~A~~~A~Gyar~t---g~-~v~~~tsGpG~--~n~~~~l~~ 127 (585)
..|=+.|+.. +.....++-... ..+ .+.++...+|.++++ |.|.+++. ++ .-+++..|=|. ...++++..
T Consensus 36 a~g~~~vi~~-~iGC~s~~~~~~p~~~~~~~~~~~~fg~~~a~-a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~ 113 (299)
T PRK11865 36 ALGKNTVIVV-ATGCLEVITTPYPETAWNVPWIHVAFENAAAV-ASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSG 113 (299)
T ss_pred HcCCCEEEEe-CCCcccccCccCcCCccccccchhhhcchHHH-HHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHH
Confidence 3454555543 444455543221 111 466777777777665 44655542 33 23334445443 346789999
Q ss_pred hhhcCCcEEEEeCCCCC
Q 044559 128 AYSENLPLICIVGGPNS 144 (585)
Q Consensus 128 A~~~~~PllvI~g~~~~ 144 (585)
|...+.++++|.=|...
T Consensus 114 a~~r~~ni~~ivlDNe~ 130 (299)
T PRK11865 114 AMERGHNILYLMYDNEA 130 (299)
T ss_pred HHHcCCCeEEEEECCcc
Confidence 99999999999877543
No 304
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=72.07 E-value=17 Score=38.17 Aligned_cols=37 Identities=19% Similarity=0.451 Sum_probs=18.2
Q ss_pred CcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcce
Q 044559 454 KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT 493 (585)
Q Consensus 454 r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~ 493 (585)
..++.+.|-|++.|-.. +.+.+. -.=.++|++||.||
T Consensus 56 ~~~~ll~gsGt~amEAa-v~sl~~--pgdkVLv~~nG~FG 92 (383)
T COG0075 56 GDVVLLSGSGTLAMEAA-VASLVE--PGDKVLVVVNGKFG 92 (383)
T ss_pred CcEEEEcCCcHHHHHHH-HHhccC--CCCeEEEEeCChHH
Confidence 35666666666655321 111111 22356666666665
No 305
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=71.32 E-value=34 Score=30.86 Aligned_cols=97 Identities=23% Similarity=0.198 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHh--h----h-cCCCCeEEeCc---chHHHHHHHhHH----hH---h-cCc-c
Q 044559 48 RHLARRLVQIGATDVFSVPGDFNLTLLDH--L----I-AEPGLNLIGCC---NELNAGYAADGY----AR---S-RGV-G 108 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~~~~l~~a--l----~-~~~~i~~i~~~---~E~~A~~~A~Gy----ar---~-tg~-~ 108 (585)
+.+++.|.+.+.=++||+-++......-+ + . ...++..+... ++..+..--.+| ++ . -++ -
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 46889999999999999977764332221 1 1 12355554432 232222111122 22 1 133 5
Q ss_pred EEEEeCChhhH-HHHHHHHHhhhcCCcEEEEeCCCCC
Q 044559 109 ACVVTFTVGGL-SVLNAIAGAYSENLPLICIVGGPNS 144 (585)
Q Consensus 109 v~~~tsGpG~~-n~~~~l~~A~~~~~PllvI~g~~~~ 144 (585)
++++-|.+|-+ +.+..+..|...++|+|.||+....
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 77777777755 4778888899999999999986443
No 306
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=70.69 E-value=25 Score=32.07 Aligned_cols=104 Identities=18% Similarity=0.153 Sum_probs=56.0
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhc
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH 519 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 519 (585)
.++.|.|.++.. .++++.....- +.+....+.+...++ ++.+|+....++.... +|. .-+..+...+.+.+-
T Consensus 61 ~vg~a~GlA~~G-~~pi~~~~~~f-~~~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~---~G~--tH~~~~~~~~~~~iP 132 (168)
T smart00861 61 MVGFAAGLALAG-LRPVVAIFFTF-FDRAKDQIRSDGAMG-RVPVVVRHDSGGGVGE---DGP--THHSQEDEALLRAIP 132 (168)
T ss_pred HHHHHHHHHHcC-CCcEEEeeHHH-HHHHHHHHHHhCccc-CCCEEEEecCccccCC---CCc--cccchhHHHHHhcCC
Confidence 356677777764 36666655332 123333444555555 4555555543332200 111 012233333344432
Q ss_pred CCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEE
Q 044559 520 NGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEV 556 (585)
Q Consensus 520 ~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV 556 (585)
. +..+...+++|+...++.+++ ..++|.+|-+
T Consensus 133 ~----~~v~~P~~~~e~~~~l~~a~~-~~~~p~~i~~ 164 (168)
T smart00861 133 G----LKVVAPSDPAEAKGLLRAAIR-RDDGPPVIRL 164 (168)
T ss_pred C----cEEEecCCHHHHHHHHHHHHh-CCCCCEEEEe
Confidence 1 277888999999999999985 3367866643
No 307
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=70.32 E-value=33 Score=35.36 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=29.9
Q ss_pred hHHHHHHh-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEE
Q 044559 511 YTGLVDAI-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFI 554 (585)
Q Consensus 511 ~~~la~a~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vI 554 (585)
|..+.+++ |. ..+...++.|+..+|+.+++ .++|++|
T Consensus 133 ~ea~~r~iP~l-----~V~~P~d~~e~~~~l~~a~~--~~~Pv~i 170 (327)
T PRK09212 133 YAAWYSHIPGL-----KVVAPYFAADCKGLLKTAIR--DPNPVIF 170 (327)
T ss_pred HHHHHhcCCCC-----EEEeeCCHHHHHHHHHHHHh--CCCcEEE
Confidence 45666665 55 77778999999999999986 6899998
No 308
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=69.09 E-value=36 Score=33.83 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=55.0
Q ss_pred cEEEEeCChhhH-H---HHHHHHHhhhcCCc---EEEEeCCCCCcccCCccccccccCCCChhHHHhhhcc--eeEEEEE
Q 044559 108 GACVVTFTVGGL-S---VLNAIAGAYSENLP---LICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQT--VTCYQAV 178 (585)
Q Consensus 108 ~v~~~tsGpG~~-n---~~~~l~~A~~~~~P---llvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~--~tk~~~~ 178 (585)
.++++..|=|+. | ..-++-=|..-+.| +|+|+-+.... ..... .+... .. +..+..+. +.-..+.
T Consensus 141 ~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g-~sT~~--~~~~~-~~--~~~~~a~~~gip~~~Vd 214 (265)
T cd02016 141 VLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIG-FTTDP--RDSRS-SP--YCTDVAKMIGAPIFHVN 214 (265)
T ss_pred eEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EEecH--HHhcc-cc--cHHHHHeecCCCEEEEc
Confidence 677777776652 2 22333335566776 88887653322 11100 00000 01 11223333 2334455
Q ss_pred eCChhhHHHHHHHHHHHhhhcCCcEEEEec
Q 044559 179 VNNLEDAHELIDTAVSTALKESKPVYISVA 208 (585)
Q Consensus 179 v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP 208 (585)
=.+++.+.+.+++|++.++...||+.|++=
T Consensus 215 G~D~~aV~~a~~~A~~~~r~g~gp~lIe~~ 244 (265)
T cd02016 215 GDDPEAVVRATRLALEYRQKFKKDVVIDLV 244 (265)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 568889999999999999999999999985
No 309
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=68.94 E-value=26 Score=32.71 Aligned_cols=70 Identities=9% Similarity=0.025 Sum_probs=49.1
Q ss_pred CCcEEEEEccchhcc--cHHHH-HHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEE
Q 044559 453 EKRVIACIGDGSFQV--TAQDV-STMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTK 529 (585)
Q Consensus 453 ~r~vv~v~GDGsf~~--~~~eL-~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~ 529 (585)
.++++++.+||+-.- ...++ ..+.+.++.|.+|=+.++. .-+.++|++=|. +++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~-----------------~~L~~ia~~tgG-----~~~~ 164 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEM-----------------HICKEICKATNG-----TYKV 164 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHH-----------------HHHHHHHHHhCC-----eeEe
Confidence 456888888876532 23343 3344567777666663210 127889999999 9999
Q ss_pred EcCHHHHHHHHHhhc
Q 044559 530 VFCEEELIEAIENAT 544 (585)
Q Consensus 530 V~~~~eL~~aL~~a~ 544 (585)
+.+.++|.+++.++.
T Consensus 165 ~~~~~~l~~~~~~~~ 179 (183)
T cd01453 165 ILDETHLKELLLEHV 179 (183)
T ss_pred eCCHHHHHHHHHhcC
Confidence 999999999998865
No 310
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=68.63 E-value=39 Score=33.31 Aligned_cols=108 Identities=19% Similarity=0.104 Sum_probs=56.9
Q ss_pred HHHHhHHhHhc---Cc-cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHh
Q 044559 95 GYAADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR 167 (585)
Q Consensus 95 ~~~A~Gyar~t---g~-~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~ 167 (585)
.-+|.|.|.+. +. .-+++..|=|..+ ..-++..|...++|.|++.-+......... ..... ...+..+
T Consensus 111 l~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~--~~~~~---~~~~~~~ 185 (255)
T cd02012 111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGP--TDDIL---FTEDLAK 185 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCc--Hhhcc---CchhHHH
Confidence 33556655442 22 3333344555555 577888899999984444434333211110 00001 1234456
Q ss_pred hhcceeEEEEEeC--ChhhHHHHHHHHHHHhhhc-CCcEEEEecCCC
Q 044559 168 CFQTVTCYQAVVN--NLEDAHELIDTAVSTALKE-SKPVYISVACNL 211 (585)
Q Consensus 168 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~-~GPV~i~iP~dv 211 (585)
+++.+--...++. +.+++.+.+++| ... .+|+.|.+-..-
T Consensus 186 ~~~a~G~~~~~v~G~d~~~l~~al~~a----~~~~~~P~~I~~~t~k 228 (255)
T cd02012 186 KFEAFGWNVIEVDGHDVEEILAALEEA----KKSKGKPTLIIAKTIK 228 (255)
T ss_pred HHHHcCCeEEEECCCCHHHHHHHHHHH----HHcCCCCEEEEEEeec
Confidence 6766643345666 666555555544 433 689999987654
No 311
>PRK13937 phosphoheptose isomerase; Provisional
Probab=67.62 E-value=41 Score=31.46 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHH--Hhhh-----cCCCCeEEeCc-chHHHHHHH--hHH-------h--Hhc
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLL--DHLI-----AEPGLNLIGCC-NELNAGYAA--DGY-------A--RSR 105 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~--~al~-----~~~~i~~i~~~-~E~~A~~~A--~Gy-------a--r~t 105 (585)
..++.+++.|++.+-=++||+=++...... ..+. ...++..+... +.......+ .|| . ..+
T Consensus 26 ~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (188)
T PRK13937 26 KVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALGR 105 (188)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhCC
Confidence 567889999999999999999666543221 1111 12456666532 322211111 111 1 222
Q ss_pred CccEEEEeCChhhH-HHHHHHHHhhhcCCcEEEEeCCCCC
Q 044559 106 GVGACVVTFTVGGL-SVLNAIAGAYSENLPLICIVGGPNS 144 (585)
Q Consensus 106 g~~v~~~tsGpG~~-n~~~~l~~A~~~~~PllvI~g~~~~ 144 (585)
..-++++-|.+|-+ +.+.++..|...++|+|.||+....
T Consensus 106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 23455555666644 5778888999999999999986544
No 312
>PRK13761 hypothetical protein; Provisional
Probab=67.33 E-value=11 Score=35.80 Aligned_cols=50 Identities=30% Similarity=0.220 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCC
Q 044559 237 GLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287 (585)
Q Consensus 237 ~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 287 (585)
....+.+.++.+|.-|++|||=+-+... +-+.+++.+||+.+++++=...
T Consensus 52 ~A~~A~raAaA~LLlA~~PVISVNGN~A-AL~p~eiveLa~~~~A~iEVNL 101 (248)
T PRK13761 52 SALEAERAAAALLLLAKHPVISVNGNTA-ALVPEEIVELAEALNAKLEVNL 101 (248)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEcchHH-hhChHHHHHHHHHhCCCEEEEe
Confidence 3456778888899999999996654442 2368999999999999986544
No 313
>PRK05261 putative phosphoketolase; Provisional
Probab=65.86 E-value=1.7e+02 Score=33.97 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=70.5
Q ss_pred CeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhh---------------hcCCcEEEEeCCCCCcc
Q 044559 83 LNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAY---------------SENLPLICIVGGPNSND 146 (585)
Q Consensus 83 i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~---------------~~~~PllvI~g~~~~~~ 146 (585)
=|+|....|..++.++.||+. +|+ +.+. |.. .++..+..+.+++ ..++. +++|.+ ...
T Consensus 450 Grvie~LsEh~~~g~~~Gy~L-tG~~~~~~-sYe-aF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn-~l~Ts~--~~~ 523 (785)
T PRK05261 450 GRVMEVLSEHLCEGWLEGYLL-TGRHGFFS-SYE-AFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN-YLLTSH--VWR 523 (785)
T ss_pred CCeeeeecHHHHHHHHHHHHh-cCCCccee-cHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCccee-EEeecc--eee
Confidence 478889999999999999999 888 6554 444 4554555666655 23333 444544 233
Q ss_pred cCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-CCcEEEEecC
Q 044559 147 YGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-SKPVYISVAC 209 (585)
Q Consensus 147 ~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~GPV~i~iP~ 209 (585)
++.+.+-|| .+.+++++...++=.-..++..+..++ ..|++.|... .+|..|-+..
T Consensus 524 qghNG~THQ---~Pg~ie~l~~~r~~~~rV~rPaDaNe~----laa~~~al~s~~~p~~IvlsR 580 (785)
T PRK05261 524 QDHNGFSHQ---DPGFIDHVANKKPDVIRVYLPPDANTL----LAVADHCLRSRNYINVIVAGK 580 (785)
T ss_pred cCCCCCCCC---CchHHHHHHhcCCCcceEEeCCCHHHH----HHHHHHHHHhCCCCEEEEEeC
Confidence 444444443 345788887777633334444444333 4456666654 6899888875
No 314
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=65.41 E-value=43 Score=31.57 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=50.6
Q ss_pred HHHHhHHhHh---cCc-cEEEEeCChhhH---HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHh
Q 044559 95 GYAADGYARS---RGV-GACVVTFTVGGL---SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR 167 (585)
Q Consensus 95 ~~~A~Gyar~---tg~-~v~~~tsGpG~~---n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~ 167 (585)
.-+|.|.|.+ .+. ..+++..|=|.+ ...-++..|.....|+++|.-+........ +.+...
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~------------~~~~~~ 148 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPN------------VGTPGN 148 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCC------------CCCHHH
Confidence 3345555533 232 444444565554 345677777777999999876543321100 112233
Q ss_pred hhcceeEEE----EEeCChhhHHHHHHHHHHHhhhcCCcEEEEecC
Q 044559 168 CFQTVTCYQ----AVVNNLEDAHELIDTAVSTALKESKPVYISVAC 209 (585)
Q Consensus 168 ~~~~~tk~~----~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~ 209 (585)
.++.+ -|. ....+.++ +.+|++.|...++|+.|.+-.
T Consensus 149 ~~~a~-G~~~~~~vdG~d~~~----l~~a~~~a~~~~~P~~I~~~T 189 (195)
T cd02007 149 LFEEL-GFRYIGPVDGHNIEA----LIKVLKEVKDLKGPVLLHVVT 189 (195)
T ss_pred HHHhc-CCCccceECCCCHHH----HHHHHHHHHhCCCCEEEEEEE
Confidence 44432 111 22234444 455565565567999988753
No 315
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=64.11 E-value=39 Score=35.19 Aligned_cols=37 Identities=5% Similarity=-0.058 Sum_probs=29.8
Q ss_pred hHHHHHHh-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEE
Q 044559 511 YTGLVDAI-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFI 554 (585)
Q Consensus 511 ~~~la~a~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vI 554 (585)
|..+.+++ |+ ..+...++.|+..+++.+++ .++|++|
T Consensus 164 ~ea~lr~iPn~-----~V~~Psd~~e~~~~l~~a~~--~~~P~~i 201 (355)
T PTZ00182 164 FEAYFAHVPGL-----KVVAPSDPEDAKGLLKAAIR--DPNPVVF 201 (355)
T ss_pred HHHHHhcCCCC-----EEEeeCCHHHHHHHHHHHHh--CCCcEEE
Confidence 44666666 44 78888999999999999986 6899987
No 316
>PRK13938 phosphoheptose isomerase; Provisional
Probab=63.93 E-value=40 Score=31.88 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=60.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHh--hhc-----CCCCeEEeCcchHHHHHHH----hHHh----H---hc
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDH--LIA-----EPGLNLIGCCNELNAGYAA----DGYA----R---SR 105 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~a--l~~-----~~~i~~i~~~~E~~A~~~A----~Gya----r---~t 105 (585)
...++.+++.|++.|-=++||+-|+....-..+ |.. .+.+..+....+ .+...| .||. + ..
T Consensus 32 ~~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~-~~~~~a~~nd~~~~~~~~~~~~~~ 110 (196)
T PRK13938 32 RAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHAN-SSHLTAVANDYDYDTVFARALEGS 110 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCC-hHHHHHhhccccHHHHHHHHHHhc
Confidence 356788889999999999999977764433332 221 123333322222 222222 1222 1 11
Q ss_pred -Cc-cEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 044559 106 -GV-GACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 106 -g~-~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
.. -++++.|..| ..+.+.++..|...+.|+|.||+.....
T Consensus 111 ~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~ 153 (196)
T PRK13938 111 ARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQ 153 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 22 3555555555 5578899999999999999999975443
No 317
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=62.75 E-value=38 Score=33.53 Aligned_cols=101 Identities=21% Similarity=0.045 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-------CCeEEeCcchHHHHH------------HHh-HHhHh
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEP-------GLNLIGCCNELNAGY------------AAD-GYARS 104 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-------~i~~i~~~~E~~A~~------------~A~-Gyar~ 104 (585)
...+.+++.|++.|-=++||.=++....++|+.+.-+ .+..+..-.+.+... +.+ -....
T Consensus 37 ~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l 116 (257)
T cd05007 37 RAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINL 116 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCC
Confidence 4567889999999888888887777777777754321 233343333322111 111 11111
Q ss_pred cCccEEEEeCChhhH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 044559 105 RGVGACVVTFTVGGL-SVLNAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 105 tg~~v~~~tsGpG~~-n~~~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
+..-+++..|..|-+ ..+.++..|...+.|+|.||+.....
T Consensus 117 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 117 TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 223344555555544 57788889999999999999876544
No 318
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=61.63 E-value=52 Score=34.55 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=65.5
Q ss_pred HHHhhhhcCCCCcEEEE--EccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC-CCCCCChHHHHHHhc
Q 044559 443 ATLGYAQSVPEKRVIAC--IGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN-VIKNWNYTGLVDAIH 519 (585)
Q Consensus 443 aAiGaalA~p~r~vv~v--~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~-~~~~~d~~~la~a~G 519 (585)
+|=|.+.+. ++|-|++ .|-|+-.. +.-|..|..-++|++++-..=-.-.| .+ .+...|...+.+++-
T Consensus 144 aAegYaR~s-gKPGvvlvTSGPGATNv-vtp~ADAlaDg~PlVvftGQVptsaI--------GtDAFQEadiVgisRScT 213 (675)
T KOG4166|consen 144 AAEGYARSS-GKPGVVLVTSGPGATNV-VTPLADALADGVPLVVFTGQVPTSAI--------GTDAFQEADIVGISRSCT 213 (675)
T ss_pred hhhhhhhhc-CCCcEEEEecCCCcccc-cchhhHHhhcCCcEEEEecccchhhc--------ccchhccCCeeeeeeccc
Confidence 566766653 4453433 45554433 45677888888998765321111111 11 235577777888886
Q ss_pred CCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 520 NGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 520 ~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
- +-+-|.+.+||..-+++|++ .-+.||+|+|+.-|
T Consensus 214 K-----wNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDlPKD 251 (675)
T KOG4166|consen 214 K-----WNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDLPKD 251 (675)
T ss_pred e-----eheeeecHHHhhHHHHHHhhhhccCCCCCeEeeCcHH
Confidence 5 67789999999999999987 33568999998755
No 319
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=59.58 E-value=34 Score=34.91 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=58.4
Q ss_pred CEEEcCCcccccchHHHHHHHHHHhCCceEeCCC---CccccCCCCCCccccccCCCCCCc--cccccc-------ccCC
Q 044559 255 PVLVAGPKMRVAKACNAFVELADACGYAVAVMPS---AKGLVPEHHPHFIGTYWGAVSTAF--FSVGYS-------LLLK 322 (585)
Q Consensus 255 pvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~---gkg~~~~~hp~~~g~~~g~~~~~~--~~~~~~-------~~~~ 322 (585)
.++-.|.|....+..+.+.+||+.+|.-|-+|-. ..|.+|.+ ..+|.. |..-.+. ...+-+ ....
T Consensus 196 vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~--~QIGqT-Gk~V~P~lYiA~GISGAiQH~aGm~~ 272 (312)
T PRK11916 196 RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE--RYIGVS-GVLLKSDLYLTLGISGQIQHMVGGNG 272 (312)
T ss_pred EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChh--cEECCC-CCCcCccEEEEeccccHHHHHhhccc
Confidence 3444566776666789999999999999877643 12456543 345543 2222222 111111 0112
Q ss_pred CccEEEEcCCcce--eccCCccc-cccHHHHHHHHHHHhc
Q 044559 323 KEKAVILQPDRVV--IANGPAFG-CVLMKDFLKALSKRLK 359 (585)
Q Consensus 323 ~~~~i~vd~d~~~--i~~~~~~~-~~~~~~~l~~L~~~l~ 359 (585)
...+|-|+.|+.. +. ...|. ..|+.+++..|.+.++
T Consensus 273 s~~IVAIN~Dp~APIF~-~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 273 AKVIVAINKDKNAPIFN-YADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred CCEEEEECCCCCCCchh-hCCeeEeeeHHHHHHHHHHHhh
Confidence 3347788888762 21 22232 2378999999988764
No 320
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=57.78 E-value=29 Score=35.46 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=59.0
Q ss_pred CEEEcCCcccccchHHHHHHHHHHhCCceEeCCCC---ccccCCCCCCccccccCCCCCCc--cccccc-------ccCC
Q 044559 255 PVLVAGPKMRVAKACNAFVELADACGYAVAVMPSA---KGLVPEHHPHFIGTYWGAVSTAF--FSVGYS-------LLLK 322 (585)
Q Consensus 255 pvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g---kg~~~~~hp~~~g~~~g~~~~~~--~~~~~~-------~~~~ 322 (585)
.++-.|.|....+..+.+++||+.+|.-|-+|-.- .|.+| |...+|.. |..-.+. ...|-+ ....
T Consensus 197 vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p--~~~QIGqT-Gk~V~P~lYiA~GISGaiQH~~Gm~~ 273 (313)
T PRK03363 197 LVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWME--HERYVGIS-NLMLKPELYLAVGISGQIQHMVGANA 273 (313)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCC--HHheecCC-CCCcCccEEEEEccccHHHHHhhccc
Confidence 34445667766678899999999999999776431 24665 34456654 3222222 111111 0112
Q ss_pred CccEEEEcCCcce--eccCCccc-cccHHHHHHHHHHHhc
Q 044559 323 KEKAVILQPDRVV--IANGPAFG-CVLMKDFLKALSKRLK 359 (585)
Q Consensus 323 ~~~~i~vd~d~~~--i~~~~~~~-~~~~~~~l~~L~~~l~ 359 (585)
...+|-||.|+.. +. ...|. -.|+.++|..|.+.++
T Consensus 274 s~~IVAIN~Dp~APIF~-~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 274 SQTIFAINKDKNAPIFQ-YADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred CCEEEEEcCCCCCCchh-hCCeeEeeeHHHHHHHHHHHhh
Confidence 2347788888762 21 22222 2378999999988764
No 321
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=56.91 E-value=31 Score=35.86 Aligned_cols=102 Identities=22% Similarity=0.310 Sum_probs=58.7
Q ss_pred CEEEcCCcccccchHHHHHHHHHHhCCceEeCCC--CccccCCCCCCccccccCCCCCCc--cccccc-------ccCCC
Q 044559 255 PVLVAGPKMRVAKACNAFVELADACGYAVAVMPS--AKGLVPEHHPHFIGTYWGAVSTAF--FSVGYS-------LLLKK 323 (585)
Q Consensus 255 pvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--gkg~~~~~hp~~~g~~~g~~~~~~--~~~~~~-------~~~~~ 323 (585)
.++-.|.|....+..+.+.+||+.+|.-|-+|-. -.|.+|.+ ..+|.. |..-.+. ..+|-+ .....
T Consensus 239 vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~~--~QIGqT-Gk~V~P~lYIA~GISGAiQH~~Gm~~s 315 (356)
T PLN00022 239 VVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPND--LQVGQT-GKIVAPELYIAVGISGAIQHLAGMKDS 315 (356)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCChH--heeccC-CCCcCCcEEEEEecchHHHHHhhcccC
Confidence 3444566776667789999999999998876632 13555533 345543 2222222 111111 01122
Q ss_pred ccEEEEcCCcce--eccCCccc-cccHHHHHHHHHHHhcc
Q 044559 324 EKAVILQPDRVV--IANGPAFG-CVLMKDFLKALSKRLKS 360 (585)
Q Consensus 324 ~~~i~vd~d~~~--i~~~~~~~-~~~~~~~l~~L~~~l~~ 360 (585)
..+|-||.|+.. +. ...|. ..|+.+++..|++.++.
T Consensus 316 ~~IVAIN~D~~APIF~-~ADygIVgD~~evlP~Lie~lk~ 354 (356)
T PLN00022 316 KVIVAINKDADAPIFQ-VADYGLVADLFEAVPELLEKLPE 354 (356)
T ss_pred CEEEEECCCCCCCchh-hcCeeEeeeHHHHHHHHHHHHHh
Confidence 347788888762 21 22232 23889999999988764
No 322
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.05 E-value=25 Score=33.16 Aligned_cols=50 Identities=32% Similarity=0.268 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCC
Q 044559 237 GLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287 (585)
Q Consensus 237 ~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 287 (585)
+..++++.|+..|.-||+|+|=+-+... +-+.+++.+||+.+|+.+-...
T Consensus 54 ~A~eA~raAaA~LlLAk~PVISVNGN~A-AL~p~e~v~La~~~~aklEVNL 103 (256)
T COG1701 54 PALEAIRAAAAALLLAKHPVISVNGNVA-ALVPEEVVELAEATGAKLEVNL 103 (256)
T ss_pred hHHHHHHHHHHHHHhccCCeEEEcCcee-eeCcHHHHHHHHHhCCceEEEe
Confidence 3566788888888899999996654442 2377999999999999875543
No 323
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=55.48 E-value=8.9 Score=21.26 Aligned_cols=14 Identities=36% Similarity=0.925 Sum_probs=11.7
Q ss_pred cccCCCCCCCCCCC
Q 044559 6 GSLDTCKPPCSDLA 19 (585)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (585)
-||..|-|||.-|.
T Consensus 4 pdlrpcyppchyip 17 (22)
T PF08121_consen 4 PDLRPCYPPCHYIP 17 (22)
T ss_pred CccccCCCCccccC
Confidence 37889999998875
No 324
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=55.00 E-value=17 Score=37.87 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=42.1
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCC
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 490 (585)
++.+|+||+++ +.+++..+-|.+|.+-...|..+.-..+|+++++.+=.
T Consensus 60 A~~~a~GAs~a--G~Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v~R~ 108 (352)
T PRK07119 60 AINMVYGAAAT--GKRVMTSSSSPGISLKQEGISYLAGAELPCVIVNIMRG 108 (352)
T ss_pred HHHHHHHHHhh--CCCEEeecCcchHHHHHHHHHHHHHccCCEEEEEeccC
Confidence 56889999987 56799999999999888888888889999999888744
No 325
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=54.90 E-value=63 Score=28.46 Aligned_cols=95 Identities=21% Similarity=0.185 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChH--HHHHhhhc----C-CCCeEEeCcchHH--HHHHH----hHHhHh-----cC
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNL--TLLDHLIA----E-PGLNLIGCCNELN--AGYAA----DGYARS-----RG 106 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~--~l~~al~~----~-~~i~~i~~~~E~~--A~~~A----~Gyar~-----tg 106 (585)
..++.+++.+++-|.=++||.=|+... ++...+.. . ..++.+ +.+... +.... .+|++. ..
T Consensus 23 ~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (138)
T PF13580_consen 23 KAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAI-ALNDDALTAISNDLEYDEGFARQLLALYDI 101 (138)
T ss_dssp HHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEE-ETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred HHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCccccccc-ccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence 568899999999999999999666433 23222211 1 123333 333322 22221 345432 23
Q ss_pred c-c-EEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeC
Q 044559 107 V-G-ACVVTFTVG-GLSVLNAIAGAYSENLPLICIVG 140 (585)
Q Consensus 107 ~-~-v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g 140 (585)
+ + ++++.|..| ..|.+-++..|..-+.++|.|||
T Consensus 102 ~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3 2 444444444 56888999999999999999986
No 326
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=52.96 E-value=30 Score=31.01 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=44.6
Q ss_pred CCcEEEEEccchhcccHHH-HHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEE-
Q 044559 453 EKRVIACIGDGSFQVTAQD-VSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKV- 530 (585)
Q Consensus 453 ~r~vv~v~GDGsf~~~~~e-L~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V- 530 (585)
.++.+.++.||.-.-+..+ +..+.+.++++.+|-+....-. .-.+..+|+.-|. .++.+
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~--------------~~~l~~la~~tgG-----~~~~~~ 159 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGSDSDA--------------NEFLQRLAEATGG-----RYFHVD 159 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-TT-E--------------HHHHHHHHHHTEE-----EEEEE-
T ss_pred CceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECCCccH--------------HHHHHHHHHhcCC-----EEEEec
Confidence 5678899999976644333 3333334544444443332111 1247889998898 89999
Q ss_pred cCHHHHHHHHHh
Q 044559 531 FCEEELIEAIEN 542 (585)
Q Consensus 531 ~~~~eL~~aL~~ 542 (585)
.+.++|.++|++
T Consensus 160 ~~~~~l~~~~~~ 171 (172)
T PF13519_consen 160 NDPEDLDDAFQQ 171 (172)
T ss_dssp SSSHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 588999999875
No 327
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=52.93 E-value=87 Score=32.24 Aligned_cols=40 Identities=3% Similarity=-0.072 Sum_probs=29.3
Q ss_pred ChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEE
Q 044559 510 NYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIE 555 (585)
Q Consensus 510 d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIe 555 (585)
.+..+.+++-. .+.+...++.|+..+|+.+++ .++|++|-
T Consensus 132 ~~ea~~~~iPg----l~V~~Psd~~d~~~~l~~a~~--~~~Pv~ir 171 (327)
T CHL00144 132 RLESYFQSVPG----LQIVACSTPYNAKGLLKSAIR--SNNPVIFF 171 (327)
T ss_pred cHHHHHhcCCC----CEEEEeCCHHHHHHHHHHHHh--CCCcEEEE
Confidence 34555555522 266677899999999999986 78998884
No 328
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=50.58 E-value=15 Score=39.07 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 242 v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
.++++++|..|+|.+|+-|+|-.-+++..++++|++.+.
T Consensus 296 ~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~ 334 (462)
T PRK09444 296 AEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR 334 (462)
T ss_pred HHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999988888888888888764
No 329
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=50.43 E-value=1.7e+02 Score=25.93 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=66.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCc--chHHHHHHHhHHhHhcCc-cEEEEeCChhh
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCC--NELNAGYAADGYARSRGV-GACVVTFTVGG 118 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~--~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~ 118 (585)
...+.-+.+++.|.+.|++.|+.+.+. ..+...+.+ .++++|... +...+..+..|.....+. .++++...--.
T Consensus 22 ~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~-~~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~ 98 (160)
T PF12804_consen 22 GGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLER-YGIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQPF 98 (160)
T ss_dssp TTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT-TTSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTETT
T ss_pred CCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc-cCceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCccc
Confidence 556888999999999999999999888 356655654 468888876 455556666666665344 77777666533
Q ss_pred --HHHHHHHHHhhh-cCCcEEEEeC
Q 044559 119 --LSVLNAIAGAYS-ENLPLICIVG 140 (585)
Q Consensus 119 --~n~~~~l~~A~~-~~~PllvI~g 140 (585)
.+.+..+.+++. +...+++.+.
T Consensus 99 ~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 99 LSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp S-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred cCHHHHHHHHHHHhccCCcEEEEEE
Confidence 467888888876 3455655554
No 330
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=50.07 E-value=16 Score=31.95 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCC
Q 044559 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSA 289 (585)
Q Consensus 239 ~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g 289 (585)
++.-.+..+.|-+.+-|.||+-.|. ...+.+.++|++.++|++.|...
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~---~~p~~l~e~a~~~~ipll~t~~~ 114 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGL---EPPPELIELAEKYNIPLLRTPLS 114 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT------HHHHHHHHHCT--EEEESS-
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcC---CCCHHHHHHHHHhCCcEEEcCCc
Confidence 3444566777778899999887766 36799999999999999998764
No 331
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=48.74 E-value=20 Score=34.85 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=34.4
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCc
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGG 491 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~ 491 (585)
++.+++|++++ +.+++..+-=.+|.+-..-|.++.-.++|+++++.|-.+
T Consensus 48 A~~~~~GAs~a--G~ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~~R~g 97 (230)
T PF01855_consen 48 AMEAAIGASAA--GARAMTATSGPGLNLMAEPLYWAAGTELPIVIVVVQRAG 97 (230)
T ss_dssp HHHHHHHHHHT--T--EEEEEECCHHHHHCCCHHHHHHTT--EEEEEEEB--
T ss_pred HHHHHHHHHhc--CCceEEeecCCcccccHhHHHHHHHcCCCEEEEEEECCC
Confidence 56888999887 456777766666766666688889999999999987554
No 332
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=48.18 E-value=3.9e+02 Score=28.94 Aligned_cols=137 Identities=13% Similarity=0.142 Sum_probs=75.4
Q ss_pred CChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHH
Q 044559 114 FTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAV 193 (585)
Q Consensus 114 sGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~ 193 (585)
.|-....++.-+..-. ..+|||+|||....... . +.. +...|.-+.| .-+++.+...+++|+
T Consensus 59 p~~~Gl~ll~~i~~~~-~~~pVI~~Tg~g~i~~A---------V---~A~-k~GA~Dfl~K----P~~~~~L~~~v~ral 120 (464)
T COG2204 59 PGMDGLELLKEIKSRD-PDLPVIVMTGHGDIDTA---------V---EAL-RLGAFDFLEK----PFDLDRLLAIVERAL 120 (464)
T ss_pred CCCchHHHHHHHHhhC-CCCCEEEEeCCCCHHHH---------H---HHH-hcCcceeeeC----CCCHHHHHHHHHHHH
Confidence 3444556666666555 88999999997543200 0 000 0122222222 235888999999999
Q ss_pred HHhhhc--CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCccc-ccchHH
Q 044559 194 STALKE--SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMR-VAKACN 270 (585)
Q Consensus 194 ~~a~~~--~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~-~~~a~~ 270 (585)
...... ... ..+..- .. . ... ....+.-.++.+.+..+..+.-||+|.|.-.. ..-...
T Consensus 121 ~~~~~~~e~~~---~~~~~~-----~~--~--~~l------iG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr 182 (464)
T COG2204 121 ELRELQRENRR---SLKRAK-----SL--G--GEL------VGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVAR 182 (464)
T ss_pred HHhhhhhhhhh---hhhccc-----cc--c--CCc------eecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHH
Confidence 875431 111 111100 00 0 000 00123445677888888999999999996432 222445
Q ss_pred HHHHHHHHhCCceEeC
Q 044559 271 AFVELADACGYAVAVM 286 (585)
Q Consensus 271 ~l~~lae~~~~Pv~tt 286 (585)
.|.+++.+.+-|++.-
T Consensus 183 ~IH~~S~R~~~PFVav 198 (464)
T COG2204 183 AIHQASPRAKGPFIAV 198 (464)
T ss_pred HHHhhCcccCCCceee
Confidence 6666777777788763
No 333
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=48.02 E-value=1.3e+02 Score=27.57 Aligned_cols=101 Identities=22% Similarity=0.206 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHh--hhc-----CCCCeEEeCc---chHHHHHHHhHHh---------Hhc
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDH--LIA-----EPGLNLIGCC---NELNAGYAADGYA---------RSR 105 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~a--l~~-----~~~i~~i~~~---~E~~A~~~A~Gya---------r~t 105 (585)
..++.|++.+.+.+-=++||+-++......-+ |.. ..++..+... +|..+..--.+|. ..+
T Consensus 21 ~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (177)
T cd05006 21 QAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQ 100 (177)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCC
Confidence 34556666665566667777765554332211 221 1245554433 2332222112222 123
Q ss_pred CccEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 044559 106 GVGACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 106 g~~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
..-++++.|..| ..+.+.++..|...++|+|.||+.....
T Consensus 101 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 101 PGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 334444444445 4578999999999999999999875443
No 334
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=47.94 E-value=68 Score=30.40 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=29.5
Q ss_pred cEEEEeCChhhHHHH-HHHHHhhhcCCcEEEEeCCCCCc
Q 044559 108 GACVVTFTVGGLSVL-NAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 108 ~v~~~tsGpG~~n~~-~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
=+++.-||.|-+.-+ +.+--|..-++++|.||+.+.+.
T Consensus 88 DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~Ss 126 (202)
T COG0794 88 DVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSS 126 (202)
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCCh
Confidence 367778999988744 55556888999999999986554
No 335
>PRK13685 hypothetical protein; Provisional
Probab=44.22 E-value=1.3e+02 Score=30.86 Aligned_cols=83 Identities=13% Similarity=0.016 Sum_probs=53.4
Q ss_pred CcEEEEEccchhccc---------HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCC--cCCCCCCChHHHHHHhcCCC
Q 044559 454 KRVIACIGDGSFQVT---------AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGP--YNVIKNWNYTGLVDAIHNGE 522 (585)
Q Consensus 454 r~vv~v~GDGsf~~~---------~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~--~~~~~~~d~~~la~a~G~~~ 522 (585)
..+|+++-||.-.-. ......+.+.+++|-+|=+-+...++. .+|. ...+..--..++|+.-|+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~---~~g~~~~~~~d~~~L~~iA~~tgG-- 268 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVE---INGQRQPVPVDDESLKKIAQLSGG-- 268 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcC---cCCceeeecCCHHHHHHHHHhcCC--
Confidence 457788999965421 123344556788888777765433221 0111 111222347889999998
Q ss_pred CCceeEEEcCHHHHHHHHHhhc
Q 044559 523 GKCWTTKVFCEEELIEAIENAT 544 (585)
Q Consensus 523 ~~~~~~~V~~~~eL~~aL~~a~ 544 (585)
+++.+++.++|.+++++.-
T Consensus 269 ---~~~~~~~~~~L~~if~~I~ 287 (326)
T PRK13685 269 ---EFYTAASLEELRAVYATLQ 287 (326)
T ss_pred ---EEEEcCCHHHHHHHHHHHH
Confidence 8999999999999998764
No 336
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=43.95 E-value=1.6e+02 Score=32.97 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=93.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCC---CChHHHHHh--hh-cC-CCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCC
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPG---DFNLTLLDH--LI-AE-PGLNLIGCCNELNAGYAADGYARSRGVGACVVTFT 115 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG---~~~~~l~~a--l~-~~-~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsG 115 (585)
++..+.-.++.|...--+.+=|... |..+.+-+. +. .+ .+=.+.....|.+.+.++-|.+.-.|.-....|.-
T Consensus 356 TR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg~~pyggTFl 435 (663)
T COG0021 356 TRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFL 435 (663)
T ss_pred hHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcCceeecceeh
Confidence 3556666667776654444444332 222211111 11 01 13234456789999999999998777311222222
Q ss_pred hhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHH
Q 044559 116 VGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVST 195 (585)
Q Consensus 116 pG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~ 195 (585)
.=.--+-+++--|...+.|++.+-...... .|.+.. ++|-.+|+..+|.+....+ =+|.|..+ ...|++.
T Consensus 436 vFsdY~r~AiRlaALm~l~~~~V~THDSIg-vGEDGP------THqPiEqLa~LRaiPN~~V--~RPaD~~E-t~~aw~~ 505 (663)
T COG0021 436 VFSDYARPAVRLAALMGLPVIYVFTHDSIG-VGEDGP------THQPVEQLASLRAIPNLSV--IRPADANE-TAAAWKY 505 (663)
T ss_pred hhHhhhhHHHHHHHhcCCCeEEEEecCcee-cCCCCC------CCCcHHHHHHhhccCCcee--EecCChHH-HHHHHHH
Confidence 223346688989999999999887654443 333322 2345689999998865332 23444433 4778999
Q ss_pred hhhc-CCcEEEEecC
Q 044559 196 ALKE-SKPVYISVAC 209 (585)
Q Consensus 196 a~~~-~GPV~i~iP~ 209 (585)
|... .||..|-+..
T Consensus 506 Al~~~~gPt~LiltR 520 (663)
T COG0021 506 ALERKDGPTALILTR 520 (663)
T ss_pred HHhcCCCCeEEEEec
Confidence 9885 7999998874
No 337
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=43.77 E-value=18 Score=38.80 Aligned_cols=39 Identities=46% Similarity=0.482 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 242 v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
.++++++|..|+|.+|+-|+|-.-+++..++++|++.+.
T Consensus 297 ~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~ 335 (463)
T PF02233_consen 297 AEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLE 335 (463)
T ss_dssp HHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999988888888888887653
No 338
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=43.05 E-value=38 Score=35.61 Aligned_cols=50 Identities=14% Similarity=0.312 Sum_probs=38.9
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCc
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGG 491 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~ 491 (585)
++.+|+||+++ +.+++..+-=++|.+-.-.|..++-..+|+++++.+..+
T Consensus 60 A~~~a~GAs~a--G~Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~~R~g 109 (376)
T PRK08659 60 SMAAVIGASWA--GAKAMTATSGPGFSLMQENIGYAAMTETPCVIVNVQRGG 109 (376)
T ss_pred HHHHHHhHHhh--CCCeEeecCCCcHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 56889999987 456777766666766666677777778999999999876
No 339
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=42.77 E-value=1.7e+02 Score=26.35 Aligned_cols=65 Identities=25% Similarity=0.288 Sum_probs=42.9
Q ss_pred HHHHHHcCCCE----EEecCCCChHHHHH-hhhcCCCCeEE----------eCcchHHHHHHHhHHhHhc---CccEEEE
Q 044559 51 ARRLVQIGATD----VFSVPGDFNLTLLD-HLIAEPGLNLI----------GCCNELNAGYAADGYARSR---GVGACVV 112 (585)
Q Consensus 51 ~~~L~~~GV~~----vFg~PG~~~~~l~~-al~~~~~i~~i----------~~~~E~~A~~~A~Gyar~t---g~~v~~~ 112 (585)
.+.|+++|++. ++-+||....|+.- .|.+..+..-| .-++|..|...+.|.++++ ++.|.+.
T Consensus 35 ~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~gl~~vsl~~~~PV~~G 114 (152)
T COG0054 35 VDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVANEVARGLMDVSLETGVPVTFG 114 (152)
T ss_pred HHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHHHHHHHHHhhCCCeEee
Confidence 47788889764 99999999999765 44443323322 3457888888888888764 4444443
Q ss_pred eCC
Q 044559 113 TFT 115 (585)
Q Consensus 113 tsG 115 (585)
..+
T Consensus 115 VLt 117 (152)
T COG0054 115 VLT 117 (152)
T ss_pred ecC
Confidence 333
No 340
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=42.28 E-value=37 Score=35.88 Aligned_cols=46 Identities=7% Similarity=0.122 Sum_probs=37.2
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEE
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLI 487 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~ 487 (585)
++.+|+||+++ +.+++..+-=.+|.+-...|..+.-.++|+++++.
T Consensus 61 A~~~aiGAs~a--GaRa~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~ 106 (390)
T PRK08366 61 AMAACIGASAA--GARAFTATSAQGLALMHEMLHWAAGARLPIVMVDV 106 (390)
T ss_pred HHHHHHHHHhh--CCCeEeeeCcccHHHHhhHHHHHHhcCCCEEEEEe
Confidence 56889999987 45677777777777777788999999999888886
No 341
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=42.18 E-value=1e+02 Score=36.37 Aligned_cols=95 Identities=11% Similarity=0.096 Sum_probs=56.6
Q ss_pred cEEEEeCChhhH-H---HHHHHHHhhhcCCcE---EEEeCCCCCcccCCccccccccCCCChhHHHhhhc--ceeEEEEE
Q 044559 108 GACVVTFTVGGL-S---VLNAIAGAYSENLPL---ICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQ--TVTCYQAV 178 (585)
Q Consensus 108 ~v~~~tsGpG~~-n---~~~~l~~A~~~~~Pl---lvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~--~~tk~~~~ 178 (585)
.++++..|=|+. | ..-++--|...+.|+ |+|+-..... ..+.. .+... ..+. .+..+ .+.-+.+.
T Consensus 344 ~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg-~tT~~--~~~~s-~~~~--sd~Ak~ygiP~~~VD 417 (929)
T TIGR00239 344 VLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIG-FTTNP--LDARS-TPYC--SDLAKMIQAPIFHVN 417 (929)
T ss_pred eEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EEEcH--HHhcC-ccCH--HHHheecCCCEEEEC
Confidence 677777886663 2 334555567789996 7776553222 11100 00000 0111 12222 23344555
Q ss_pred eCChhhHHHHHHHHHHHhhhcCCcEEEEec
Q 044559 179 VNNLEDAHELIDTAVSTALKESKPVYISVA 208 (585)
Q Consensus 179 v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP 208 (585)
=.+++.+...++.|++.++...|||.|++=
T Consensus 418 G~D~~AV~~a~~~Ave~~r~g~gPvlIE~~ 447 (929)
T TIGR00239 418 ADDPEAVAFATRLAVEYRNTFKRDVFIDLV 447 (929)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 568888999999999999999999999985
No 342
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=41.87 E-value=97 Score=33.65 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=57.4
Q ss_pred CHHHHHHHHHhhC--------CCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEE
Q 044559 388 RVNVLFQHIQKML--------SSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIAC 459 (585)
Q Consensus 388 ~~~~~~~~l~~~l--------~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v 459 (585)
.+..++..+.+.+ ....++++-.++.-. -++.||++|..-|-||++|.-+.-. .+-.|.+|
T Consensus 234 e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E~-------IDpVR~ItN~SSGkmG~alA~aa~~----~GA~VtlI 302 (475)
T PRK13982 234 EPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEP-------IDPVRYIANRSSGKQGFAIAAAAAA----AGAEVTLI 302 (475)
T ss_pred CHHHHHHHHHHHHhhccccccCCCEEEEecCCcccc-------CCcceeeCCCCchHHHHHHHHHHHH----CCCcEEEE
Confidence 4566666665544 233455543333211 1356799999999999888776543 35679999
Q ss_pred Eccchh----------cccHHHHHHHHHhCCceEEEEEe
Q 044559 460 IGDGSF----------QVTAQDVSTMLRCGQKTIIFLIN 488 (585)
Q Consensus 460 ~GDGsf----------~~~~~eL~ta~~~~lpv~ivV~N 488 (585)
.|-.++ .-+..|+..+++..++.-++|+.
T Consensus 303 ~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~~~~Di~I~a 341 (475)
T PRK13982 303 SGPVDLADPQGVKVIHVESARQMLAAVEAALPADIAIFA 341 (475)
T ss_pred eCCcCCCCCCCceEEEecCHHHHHHHHHhhCCCCEEEEe
Confidence 987664 12478888888766665555543
No 343
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.63 E-value=47 Score=35.21 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeC
Q 044559 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVM 286 (585)
Q Consensus 239 ~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt 286 (585)
....-+++..|.+-.+-+.++....+++.|.++|+.|+++.++||+..
T Consensus 114 TTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 114 TTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred HhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 344667778887765666666667778899999999999999999865
No 344
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=41.52 E-value=1e+02 Score=31.18 Aligned_cols=100 Identities=20% Similarity=0.086 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC--CC-----eEEeCcch------------HH-HHHHHhHHhHh
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEP--GL-----NLIGCCNE------------LN-AGYAADGYARS 104 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~--~i-----~~i~~~~E------------~~-A~~~A~Gyar~ 104 (585)
...+.+++.|++.|-=++||+=++....+.|+.+.-+ +. +.+..-.+ .. ++.........
T Consensus 45 ~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l 124 (291)
T TIGR00274 45 AAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHL 124 (291)
T ss_pred HHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCC
Confidence 3456778888888888888887776666777643211 11 11111111 11 11111121223
Q ss_pred cCccEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCCC
Q 044559 105 RGVGACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPNS 144 (585)
Q Consensus 105 tg~~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 144 (585)
+-.=++++.|..| ..+.+.++..|...+.|+|.||+....
T Consensus 125 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 125 TKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3232333334444 445778889999999999999986543
No 345
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=41.34 E-value=76 Score=31.53 Aligned_cols=139 Identities=21% Similarity=0.180 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCCh--HHHHHhhhcCCCCeEEeCc----------chHHHHHHHhHHh-HhcC-ccEEEEe
Q 044559 48 RHLARRLVQIGATDVFSVPGDFN--LTLLDHLIAEPGLNLIGCC----------NELNAGYAADGYA-RSRG-VGACVVT 113 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~~--~~l~~al~~~~~i~~i~~~----------~E~~A~~~A~Gya-r~tg-~~v~~~t 113 (585)
.+.++.+.+.|.+.|...-+... +=+.+.|. +..++|... +|..-+.+=.||. ++.. .+++.=|
T Consensus 40 nAaiega~~aGa~eVvV~DsHg~~~Nll~e~L~--~~a~LI~G~pkp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL~HT 117 (266)
T cd08663 40 NAAIEGALEAGATEVLVNDSHGSMRNLLPEDLD--PRARLISGSPKPLGMMEGLDEGFDAALFVGYHARAGTPPGVLSHT 117 (266)
T ss_pred HHHHHHHHHcCCcEEEEEcCCCCccCcChHHCC--ccEEEEecCCCCchhhhccccCcCEEEEEecCCCcCCCCCccccc
Confidence 45678899999999998765332 23455553 456666332 3333344445654 3422 2443222
Q ss_pred -CChh----------hHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCC
Q 044559 114 -FTVG----------GLS-VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNN 181 (585)
Q Consensus 114 -sGpG----------~~n-~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~ 181 (585)
+|-. +.. .+++. -|-.-++||+++|||.-....-+ .+. ++ ...+..=+.+.+++....+
T Consensus 118 ~s~~~v~~v~iNG~~vgE~glna~-~Ag~~gVPV~lVsGDd~~~~ea~------~~~-p~-i~tv~vK~~~gr~aa~~~~ 188 (266)
T cd08663 118 YSGGAVRDVRLNGREVGETGLNAA-VAGEYGVPVVLVTGDDAACAEAR------ELG-PG-VETVAVKEAIGRFAARCLP 188 (266)
T ss_pred ccccceEEEEECCEEcCHHHHHHH-HHhhcCCCEEEEecCHHHHHHHH------hhC-CC-cEEEEEecccCCCccccCC
Confidence 1110 111 12222 24467999999999964431110 000 00 0011222334456777778
Q ss_pred hhhHHHHHHHHHHHhh
Q 044559 182 LEDAHELIDTAVSTAL 197 (585)
Q Consensus 182 ~~~~~~~l~~A~~~a~ 197 (585)
|+++.+.|+++.+.|.
T Consensus 189 p~~a~~~I~~~a~~Al 204 (266)
T cd08663 189 PAEARALIREAAAEAV 204 (266)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998886
No 346
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=40.69 E-value=1.5e+02 Score=30.17 Aligned_cols=101 Identities=22% Similarity=0.022 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-------CCeEEeCcchHHHHH------------HHhHHhH-h
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEP-------GLNLIGCCNELNAGY------------AADGYAR-S 104 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-------~i~~i~~~~E~~A~~------------~A~Gyar-~ 104 (585)
...+.+++.|++.|-=++||.=++....++|+.+.-+ .+..+..-.+.+... ..+=.+. .
T Consensus 50 ~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~l 129 (299)
T PRK05441 50 AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINL 129 (299)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcCC
Confidence 3456778889888888888887777777777654321 122232222211111 1111111 2
Q ss_pred cCccEEEEeCChhhH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 044559 105 RGVGACVVTFTVGGL-SVLNAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 105 tg~~v~~~tsGpG~~-n~~~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
+..-+++..|..|-+ ..+.++..|...+.++|.||+.....
T Consensus 130 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~ 171 (299)
T PRK05441 130 TAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSP 171 (299)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 333345444555644 57788889999999999999875543
No 347
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=40.60 E-value=27 Score=28.14 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=27.5
Q ss_pred CCEEEcCCcccccchHHHHHHHHHHhCCceEeCCC--CccccCC
Q 044559 254 KPVLVAGPKMRVAKACNAFVELADACGYAVAVMPS--AKGLVPE 295 (585)
Q Consensus 254 rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~--gkg~~~~ 295 (585)
+.++-+|.|....+..+.+++||+.+|+-|-+|-. -.|.+|.
T Consensus 8 ~~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~ 51 (86)
T PF00766_consen 8 EVVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPR 51 (86)
T ss_dssp SEEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-G
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCch
Confidence 34666788888777889999999999999877632 2455554
No 348
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=40.49 E-value=30 Score=34.48 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCCEEEecCCCC--hHHHHHhhhcCCCCeEEeCc----------chHHHHHHHhHHhHhcCc--cEEEEe
Q 044559 48 RHLARRLVQIGATDVFSVPGDF--NLTLLDHLIAEPGLNLIGCC----------NELNAGYAADGYARSRGV--GACVVT 113 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~--~~~l~~al~~~~~i~~i~~~----------~E~~A~~~A~Gyar~tg~--~v~~~t 113 (585)
.+.++.+.+.|.+.|...-+.. .+=+++.|. +..++|... +|..-+.+=.||.-..|. |++- |
T Consensus 40 nAaiega~~aGa~eIvV~DsHg~~~Nl~~e~L~--~~a~LI~G~prp~~Mm~Gld~s~D~v~fiGYHa~aG~~~gvl~-H 116 (270)
T cd08769 40 NAVLEELFESGFEEIVVADSHGRMDNIDYEELD--PRVSLVSGYPRPLSMMTGLDESFDAVLFIGYHAGAGTPKGIMD-H 116 (270)
T ss_pred HHHHHHHHHcCCcEEEEEcCCCCcCCCChHHCC--cceEEEecCCCCchHhhccccCccEEEEEecCCCCCCCCCccc-c
Confidence 4677899999999998876432 223455554 445555332 333333344566543333 3333 2
Q ss_pred CChhh------------HH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeC
Q 044559 114 FTVGG------------LS-VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVN 180 (585)
Q Consensus 114 sGpG~------------~n-~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~ 180 (585)
+-.|. .. .+++. -|-.-++||+++|||......-+. .. ++ ...+..=+.+.+++....
T Consensus 117 T~s~~~~~~v~iNG~~~gE~~lNa~-~Ag~~gVPV~lVsGDd~~~~ea~~-----~~--P~-~~tv~vK~~~gr~aA~~~ 187 (270)
T cd08769 117 TYSGSTIYNIWINGKEMNETLINAA-YAGEFGVPVVLVAGDSELEKEVKE-----ET--PW-AVFVPTKESLSRYSAKSP 187 (270)
T ss_pred ccccCceEEEEECCEEcCHHHHHHH-HHhhcCCCEEEEecCHHHHHHHHH-----hC--CC-ceEEEEeeecCCCccccC
Confidence 22121 11 12222 244579999999999533211000 00 00 001122233445677777
Q ss_pred ChhhHHHHHHHHHHHhhh
Q 044559 181 NLEDAHELIDTAVSTALK 198 (585)
Q Consensus 181 ~~~~~~~~l~~A~~~a~~ 198 (585)
+|+.+.+.|++|.+.|..
T Consensus 188 ~p~~a~~~I~~aa~~Al~ 205 (270)
T cd08769 188 SMKKVKEELREAVKEALE 205 (270)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 889999999988888864
No 349
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=39.75 E-value=3.8e+02 Score=27.13 Aligned_cols=60 Identities=17% Similarity=0.040 Sum_probs=42.3
Q ss_pred CeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhH-H-HHHHHHHhhhcCCcEEEEeCCCC
Q 044559 83 LNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-S-VLNAIAGAYSENLPLICIVGGPN 143 (585)
Q Consensus 83 i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~-n-~~~~l~~A~~~~~PllvI~g~~~ 143 (585)
..++++.||+++++ |.|..++.-.--+++.+|=|-+ . ..+++..|...+.=|.+|.-+..
T Consensus 65 ~~~~hs~~gra~a~-atGik~A~~~l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNe 126 (294)
T COG1013 65 PPWVHSLHGRAAAV-ATGIKLANPALSVIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNE 126 (294)
T ss_pred CCceeeccCcchhh-HHHHHHhccCCeEEEEecchhHhhhhhHHHHHHHHcCCCeEEEEECCe
Confidence 56889999998876 4677777665233334555522 2 56788899999999998887643
No 350
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=38.65 E-value=1.7e+02 Score=34.69 Aligned_cols=95 Identities=12% Similarity=-0.004 Sum_probs=56.8
Q ss_pred cEEEEeCChhhH-H---HHHHHHHhhhcCCc---EEEEeCCCCCcccCCccccccccCCCChhHHHhhhcc--eeEEEEE
Q 044559 108 GACVVTFTVGGL-S---VLNAIAGAYSENLP---LICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQT--VTCYQAV 178 (585)
Q Consensus 108 ~v~~~tsGpG~~-n---~~~~l~~A~~~~~P---llvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~--~tk~~~~ 178 (585)
.++++..|=|+. | ..-++-=|..-+.| +|+|+-..... ..+. .++... .....+..+. +.-..+.
T Consensus 343 ~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g-~tT~--~~~~~s---~~~~sd~Ak~~giP~~~VD 416 (924)
T PRK09404 343 VLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIG-FTTS--PPDDRS---TPYCTDVAKMVQAPIFHVN 416 (924)
T ss_pred eEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EeeC--HHHhcc---chhHHHHHeecCCcEEEEc
Confidence 577777776664 2 33344446667777 99988664322 1110 000000 1111233333 3344555
Q ss_pred eCChhhHHHHHHHHHHHhhhcCCcEEEEec
Q 044559 179 VNNLEDAHELIDTAVSTALKESKPVYISVA 208 (585)
Q Consensus 179 v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP 208 (585)
=++++.+.+.++.|++.++...|||.|++=
T Consensus 417 G~D~~AV~~a~~~A~e~~r~g~gPvlIE~~ 446 (924)
T PRK09404 417 GDDPEAVVFATRLALEYRQKFKKDVVIDLV 446 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcCEEEEEE
Confidence 568888999999999999999999999985
No 351
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=38.35 E-value=1.7e+02 Score=29.61 Aligned_cols=101 Identities=15% Similarity=0.002 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-------CCeEEeCcchHHHH-----------HHHhH-HhH-h
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEP-------GLNLIGCCNELNAG-----------YAADG-YAR-S 104 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~-------~i~~i~~~~E~~A~-----------~~A~G-yar-~ 104 (585)
..++.+++.|++.|-=++||.=++.....+++...-+ .+..+..-.+.+.. ..+.- .+. .
T Consensus 46 ~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l 125 (296)
T PRK12570 46 QAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIGL 125 (296)
T ss_pred HHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHHHHHHHcCC
Confidence 4567788999999988888888887777777654211 12222222222111 11111 111 1
Q ss_pred cCccEEEEeCChhhH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 044559 105 RGVGACVVTFTVGGL-SVLNAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 105 tg~~v~~~tsGpG~~-n~~~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
+..-++++.|..|-+ +.+.++..|...+.++|.||+.....
T Consensus 126 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~ 167 (296)
T PRK12570 126 TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSP 167 (296)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 223445545555544 68888999999999999999876544
No 352
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=38.30 E-value=92 Score=29.72 Aligned_cols=68 Identities=16% Similarity=0.015 Sum_probs=48.4
Q ss_pred EEEEEc-cchhcc--cHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEcC
Q 044559 456 VIACIG-DGSFQV--TAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFC 532 (585)
Q Consensus 456 vv~v~G-DGsf~~--~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~ 532 (585)
++.+.| |-.++| .++.+-.|.+.++||-++=+--+ . .=...-+.+-|. .|..|++
T Consensus 157 iftlsG~d~~~qYip~mnCiF~Aqk~~ipI~v~~i~g~--s---------------~fl~Q~~daTgG-----~Yl~ve~ 214 (296)
T COG5242 157 IFTLSGRDRKDQYIPYMNCIFAAQKFGIPISVFSIFGN--S---------------KFLLQCCDATGG-----DYLTVED 214 (296)
T ss_pred EEEecCchhhhhhchhhhheeehhhcCCceEEEEecCc--c---------------HHHHHHhhccCC-----eeEeecC
Confidence 334558 999999 58888888899999877543111 0 113555677777 8999999
Q ss_pred HHHHHHHHHhhcC
Q 044559 533 EEELIEAIENATG 545 (585)
Q Consensus 533 ~~eL~~aL~~a~~ 545 (585)
++.|-+-|-.++.
T Consensus 215 ~eGllqyL~~~lf 227 (296)
T COG5242 215 TEGLLQYLLSLLF 227 (296)
T ss_pred chhHHHHHHHHhc
Confidence 9988887777664
No 353
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=38.16 E-value=4.7e+02 Score=28.17 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=27.7
Q ss_pred HHHHHHHHHhc-CCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCC
Q 044559 242 VEAAAEFLNKA-VKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPS 288 (585)
Q Consensus 242 v~~~~~~L~~a-~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 288 (585)
.+.+.+...+. .||++....+.. ..++.+++.+..|+|++.++.
T Consensus 390 a~~l~~~~~~~~~KPvv~~~~gg~---~~~~~~~~L~~~Gip~f~~p~ 434 (447)
T TIGR02717 390 AKGIIEGAKKSNEKPVVAGFMGGK---SVDPAKRILEENGIPNYTFPE 434 (447)
T ss_pred HHHHHHHHHhcCCCcEEEEecCCc---cHHHHHHHHHhCCCCccCCHH
Confidence 34445555555 889976653321 345566666678999988764
No 354
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=37.70 E-value=61 Score=33.22 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeC
Q 044559 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVM 286 (585)
Q Consensus 239 ~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt 286 (585)
...+.+++.++.+..+-++++-..-.|++|.++|..+++++|++|+..
T Consensus 153 TTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 153 TTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred HhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc
Confidence 456788888887665555555555667889999999999999999964
No 355
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=37.54 E-value=1.6e+02 Score=26.93 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhH-HHH
Q 044559 47 GRHLARRLVQIGATDVFSVPGDFNLTLLDHLIA---EPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-SVL 122 (585)
Q Consensus 47 a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~-n~~ 122 (585)
-+.+++.|.+.+-=++||+-++. .+...+.. .-++.++...+ .. ....+..-++++-|..|-+ ..+
T Consensus 20 ~~~~~~~l~~a~~I~i~G~G~S~--~~A~~~~~~l~~~g~~~~~~~~-~~-------~~~~~~~Dv~I~iS~sG~t~~~i 89 (179)
T TIGR03127 20 LDKLADKIIKAKRIFVAGAGRSG--LVGKAFAMRLMHLGFNVYVVGE-TT-------TPSIKKGDLLIAISGSGETESLV 89 (179)
T ss_pred HHHHHHHHHhCCEEEEEecCHHH--HHHHHHHHHHHhCCCeEEEeCC-cc-------cCCCCCCCEEEEEeCCCCcHHHH
Confidence 45678888888766677765543 33333321 12454544332 11 1223334455555556644 577
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCc
Q 044559 123 NAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
..+..|...++|+|.||+.....
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCc
Confidence 88888999999999999875543
No 356
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=37.45 E-value=75 Score=26.08 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHHHHhhhhc
Q 044559 535 ELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAAN 578 (585)
Q Consensus 535 eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~~~ 578 (585)
++++.|+..++ +-.+|+.|.+.++.++..+.++++.+++++.+
T Consensus 5 ~~~~qL~~~f~-~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lS 47 (94)
T cd02974 5 NLKQQLKAYLE-RLENPVELVASLDDSEKSAELLELLEEIASLS 47 (94)
T ss_pred HHHHHHHHHHH-hCCCCEEEEEEeCCCcchHHHHHHHHHHHHhC
Confidence 34444444442 34579999999998888888999998888754
No 357
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=36.86 E-value=1.3e+02 Score=30.78 Aligned_cols=101 Identities=23% Similarity=0.295 Sum_probs=58.0
Q ss_pred EEEcCCcccccchHHHHHHHHHHhCCceEeCCCC--ccccCCCCCCccccccCCCCCCc--ccccccc-------cCCCc
Q 044559 256 VLVAGPKMRVAKACNAFVELADACGYAVAVMPSA--KGLVPEHHPHFIGTYWGAVSTAF--FSVGYSL-------LLKKE 324 (585)
Q Consensus 256 vIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g--kg~~~~~hp~~~g~~~g~~~~~~--~~~~~~~-------~~~~~ 324 (585)
++-.|.|....+..+.+.+||+.+|+-|-+|-.. .|.+|.+| .+|.. |..-.+. ...|-+. .....
T Consensus 198 VVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d~--QVGqT-Gk~V~P~LYIA~GISGAiQHlaGm~~Sk 274 (313)
T COG2025 198 VVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPNDR--QVGQT-GKTVAPKLYIALGISGAIQHLAGMKDSK 274 (313)
T ss_pred EEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCccc--eecCC-CcEecccEEEEEecccHHHHHhhcccCc
Confidence 4445667766677788999999999988776332 46666553 45543 2221111 1111110 11223
Q ss_pred cEEEEcCCcce--eccCCcccc-ccHHHHHHHHHHHhcc
Q 044559 325 KAVILQPDRVV--IANGPAFGC-VLMKDFLKALSKRLKS 360 (585)
Q Consensus 325 ~~i~vd~d~~~--i~~~~~~~~-~~~~~~l~~L~~~l~~ 360 (585)
.+|-|+.|+.. +. ...|.- .|+-.++.+|.+.++.
T Consensus 275 ~IVAINkD~nAPIF~-~ADyGiVgDl~~ivP~Lie~l~~ 312 (313)
T COG2025 275 VIVAINKDPNAPIFQ-VADYGIVGDLFKIVPALIEALKK 312 (313)
T ss_pred EEEEEcCCCCCCccc-cCCeeeeeeHHHHHHHHHHHHhc
Confidence 46778877752 21 223332 3788999999988753
No 358
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=36.45 E-value=15 Score=36.47 Aligned_cols=140 Identities=21% Similarity=0.161 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHH--HHHhhhcCCCCeEEeCc----------chHHHHHHHhHHhHhcCc--cEEEEe
Q 044559 48 RHLARRLVQIGATDVFSVPGDFNLT--LLDHLIAEPGLNLIGCC----------NELNAGYAADGYARSRGV--GACVVT 113 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~~~~--l~~al~~~~~i~~i~~~----------~E~~A~~~A~Gyar~tg~--~v~~~t 113 (585)
.+.++.+.+.|.+.|...-+..... +.+.|. +..++|... +|..-+.+=.||.-..|. +++. |
T Consensus 40 nAaiega~~aGa~eVvV~DsHg~~~Nl~~~~L~--~~~~LI~G~~rp~~Mm~Gld~~~Dav~fiGYHa~aGt~~gvL~-H 116 (265)
T PF04951_consen 40 NAAIEGAFEAGATEVVVNDSHGSMRNLLPEELP--PRARLIRGSPRPLSMMEGLDESFDAVFFIGYHARAGTPRGVLA-H 116 (265)
T ss_dssp HHHHHHHHHTT-SEEEEEE-STTS--S-TTTS---TTSEEEEES--TTGGGTT--TT-SEEEEEEE---TTS-SSTT---
T ss_pred HHHHHHHHhcCCeEEEEEecCCCCCCcChHHCC--cCeEEEeCCCCcchhhhccccCcCEEEEEecCcccCCCCcccc-c
Confidence 4677899999999999875543322 333443 467777642 222222222455533332 2222 2
Q ss_pred CChh------------hHH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeC
Q 044559 114 FTVG------------GLS-VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVN 180 (585)
Q Consensus 114 sGpG------------~~n-~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~ 180 (585)
+-.| +.. .+++. -|-.-++||+++|||......-+. .+. + ...+..=+.+..++....
T Consensus 117 T~~~~~i~~v~iNG~~~gE~~lna~-~Ag~~GVPV~lVsGD~~l~~ea~~-----~~P--~-~~tv~vK~~~gr~aA~~~ 187 (265)
T PF04951_consen 117 TYSGSVIHEVRINGREVGEFGLNAA-LAGYYGVPVVLVSGDDALCEEAKE-----LLP--W-IVTVAVKEGIGRYAAISL 187 (265)
T ss_dssp SSSTTE-EEEEETTEEE-HHHHHHH-HHHHTT--EEEEEEEHHHHHHHHT-----TST--T--EEEEEEEEEETTEEEE-
T ss_pred eeccccceeEEECCEEcchhHHHHH-HHhhcCCcEEEEeCcHHHHHHHHH-----hCC--C-ceEEEEecccCCCccccC
Confidence 2111 112 23333 355679999999998543311110 000 0 000122233444567777
Q ss_pred ChhhHHHHHHHHHHHhhhc
Q 044559 181 NLEDAHELIDTAVSTALKE 199 (585)
Q Consensus 181 ~~~~~~~~l~~A~~~a~~~ 199 (585)
+|+.+.+.|+++.+.|...
T Consensus 188 ~p~~a~~~i~~~a~~Al~~ 206 (265)
T PF04951_consen 188 HPAEACERIREAAKEALER 206 (265)
T ss_dssp -HHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999863
No 359
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=36.20 E-value=39 Score=35.40 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCEEEcCCcccccc----hHHHHHHHHHHh
Q 044559 244 AAAEFLNKAVKPVLVAGPKMRVAK----ACNAFVELADAC 279 (585)
Q Consensus 244 ~~~~~L~~a~rpvIi~G~g~~~~~----a~~~l~~lae~~ 279 (585)
..++.|.++|+|+||+|.++.... ....+..|++..
T Consensus 213 ~~~~~L~~ak~p~Ii~G~~~~~~~~~~~~~~~~~~l~~~~ 252 (366)
T cd02774 213 LFCKQLKKSKKPLIIIGSSFSLRKNYSFIISKLKNFSSNN 252 (366)
T ss_pred HHHHHHhcCCCCEEEEChHHhCCCCHHHHHHHHHHHHHhh
Confidence 456788999999999999886532 334555666664
No 360
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=35.70 E-value=2e+02 Score=27.13 Aligned_cols=71 Identities=6% Similarity=0.072 Sum_probs=47.9
Q ss_pred CCcEEEEEccchh-c--ccHHHH--HHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCcee
Q 044559 453 EKRVIACIGDGSF-Q--VTAQDV--STMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWT 527 (585)
Q Consensus 453 ~r~vv~v~GDGsf-~--~~~~eL--~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~ 527 (585)
+.+|+.+.-||.. - .+..++ ..|..+++++-.|-+-.. .......+|+.=|. +|
T Consensus 111 ~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~----------------d~~~l~~iA~~tgG-----~~ 169 (191)
T cd01455 111 DEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSL----------------SDEADQLQRELPAG-----KA 169 (191)
T ss_pred CCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCC----------------CHHHHHHHHhCCCC-----cE
Confidence 3568889999974 3 345543 334567777655543210 11235677887777 99
Q ss_pred EEEcCHHHHHHHHHhhc
Q 044559 528 TKVFCEEELIEAIENAT 544 (585)
Q Consensus 528 ~~V~~~~eL~~aL~~a~ 544 (585)
+++.+.++|.+++++.+
T Consensus 170 F~A~d~~~L~~iy~~I~ 186 (191)
T cd01455 170 FVCMDTSELPHIMQQIF 186 (191)
T ss_pred EEeCCHHHHHHHHHHHH
Confidence 99999999999998876
No 361
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=35.68 E-value=37 Score=28.24 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=22.7
Q ss_pred hcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCC
Q 044559 251 KAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPS 288 (585)
Q Consensus 251 ~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 288 (585)
..-+-+|+.|+.. ..+.+.++|+..++||+.|+.
T Consensus 60 ~~i~~iIltg~~~----~~~~v~~la~~~~i~vi~t~~ 93 (105)
T PF07085_consen 60 AGIACIILTGGLE----PSEEVLELAKELGIPVISTPY 93 (105)
T ss_dssp TTECEEEEETT--------HHHHHHHHHHT-EEEE-SS
T ss_pred hCCCEEEEeCCCC----CCHHHHHHHHHCCCEEEEECC
Confidence 3346678887544 568999999999999999875
No 362
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=35.24 E-value=34 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=30.5
Q ss_pred cCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCC
Q 044559 252 AVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPS 288 (585)
Q Consensus 252 a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 288 (585)
.++.++++|.|...+-....+++++++.|+++-.+..
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 4688999999998777779999999999998754433
No 363
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=35.23 E-value=4.9e+02 Score=26.30 Aligned_cols=101 Identities=14% Similarity=0.127 Sum_probs=58.0
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcc-cHHH-H-HHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHH
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQV-TAQD-V-STMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVD 516 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~-~~~e-L-~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~ 516 (585)
.+++|.|.+++. .+|. +++=+.|++ -..| + .+..+.++||++|..+-| +... .+|.. -..++=-.+.+
T Consensus 61 mvg~AAGLA~~G-k~Pf--v~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G-~t~g---~dG~s--Hq~~EDiaimR 131 (312)
T COG3958 61 MVGTAAGLALAG-KKPF--VSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAG-VTYG---EDGSS--HQALEDIAIMR 131 (312)
T ss_pred HHHHHHHHHhcC-CCce--eechHHHHHHHHHHHHHHHhhhccCCeEEEEecCC-cccC---CCCcc--chhHHHHHHHh
Confidence 367888887762 3333 567788888 3444 3 455678999999887655 2110 01110 01122233445
Q ss_pred HhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEE
Q 044559 517 AIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIE 555 (585)
Q Consensus 517 a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIe 555 (585)
++.- ...+...|.-+.+++++.+.+ .+||+-+-
T Consensus 132 ~lpn----~~V~~P~D~v~~~~i~~~~~~--~~GP~Y~R 164 (312)
T COG3958 132 GLPN----MTVIAPADAVETRAILDQIAD--YKGPVYMR 164 (312)
T ss_pred cCCC----ceEEccCcHHHHHHHHHHHHh--cCCCEEEE
Confidence 5543 144455666688888887765 77887653
No 364
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=34.93 E-value=39 Score=34.06 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCC
Q 044559 238 LEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287 (585)
Q Consensus 238 ~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 287 (585)
++.+++++.++|.++++.|++.|.|... ..|||-+=..
T Consensus 5 ~~~~l~~l~~~i~~~~~ivvlTGAGiS~------------~SGIPdFR~~ 42 (285)
T PRK05333 5 DPAALDALQDFVERHPRLFVLTGAGIST------------DSGIPDYRDR 42 (285)
T ss_pred cHHHHHHHHHHHHhCCcEEEEeCCcccc------------ccCCCcccCC
Confidence 5667888999999999999999999864 3678766443
No 365
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=34.86 E-value=52 Score=33.32 Aligned_cols=51 Identities=8% Similarity=0.149 Sum_probs=39.5
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
++..+|++++|.-.-- +..+|..+.....++++++. ..+.||+|||+.+|-
T Consensus 113 dfqavdi~~ia~pv~k-----wavtv~epalvp~v~qkafhlmrs~rpgpvlidlp~dv 166 (592)
T COG3960 113 DFQAVDIEAIAKPVSK-----WAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 166 (592)
T ss_pred hhhhhhHHHhhhhhhh-----hhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEecccce
Confidence 4566899999988765 77888888888888888776 346789999887763
No 366
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=34.17 E-value=2.3e+02 Score=26.01 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 47 GRHLARRLVQIGATDVFSVPGDFNLTLLDHLIA---EPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 47 a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
-+.+++.|.+.+-=++||+-++ ..+...+.. .-+++++...+. . ....+.. .+++.+.+.-..+.+
T Consensus 23 l~~~~~~i~~a~~I~i~G~G~S--~~~A~~~~~~l~~~g~~~~~~~~~-~-------~~~~~~~D~vI~iS~sG~t~~~i 92 (179)
T cd05005 23 LDKLISAILNAKRIFVYGAGRS--GLVAKAFAMRLMHLGLNVYVVGET-T-------TPAIGPGDLLIAISGSGETSSVV 92 (179)
T ss_pred HHHHHHHHHhCCeEEEEecChh--HHHHHHHHHHHHhCCCeEEEeCCC-C-------CCCCCCCCEEEEEcCCCCcHHHH
Confidence 3567888888876677776443 333333321 125555544321 0 1123334 444444444455678
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCc
Q 044559 123 NAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
..+..|...++|+|.||+.....
T Consensus 93 ~~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 93 NAAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCc
Confidence 88999999999999999876544
No 367
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=33.55 E-value=48 Score=32.79 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=42.0
Q ss_pred CCcccccchhHHHHhhhhcC-------CCCcEEEEEccchhccc--HHHHH----------HHHHhCCceEEEEEeCCcc
Q 044559 432 MQYGSIGWSVGATLGYAQSV-------PEKRVIACIGDGSFQVT--AQDVS----------TMLRCGQKTIIFLINNGGY 492 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~-------p~r~vv~v~GDGsf~~~--~~eL~----------ta~~~~lpv~ivV~NN~~~ 492 (585)
..+.-||++++..+|.++.+ ...|+|++.--|+.-|. +..|. -..+.++|.+.|+-|=-.+
T Consensus 129 ~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtG 208 (294)
T COG0777 129 MDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTG 208 (294)
T ss_pred EeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCcc
Confidence 44566788888888877642 35789999999988663 22222 2223589988877776655
Q ss_pred ee
Q 044559 493 TI 494 (585)
Q Consensus 493 ~~ 494 (585)
|+
T Consensus 209 GV 210 (294)
T COG0777 209 GV 210 (294)
T ss_pred ch
Confidence 55
No 368
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=33.22 E-value=42 Score=27.61 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.9
Q ss_pred CCEEEcCCcccccchHHHHHHHHHHhCCceEeC
Q 044559 254 KPVLVAGPKMRVAKACNAFVELADACGYAVAVM 286 (585)
Q Consensus 254 rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt 286 (585)
|.++++|.|...+-..+.++++++..|+++-.+
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~ 33 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIE 33 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEE
Confidence 468899999988877889999999999987443
No 369
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=33.16 E-value=2.8e+02 Score=27.78 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhh-HHH
Q 044559 47 GRHLARRLVQIGATDVFSVPGDFNLTLLDHLIA---EPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGG-LSV 121 (585)
Q Consensus 47 a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~-~n~ 121 (585)
-+..++.|.+..=-++|| ++.+..+...+.. .-+++++...+..... | ++...+. -|+++.|-.|- -..
T Consensus 120 l~~av~~L~~A~rI~~~G--~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~-~---~~~~~~~~Dv~i~iS~sG~t~e~ 193 (281)
T COG1737 120 LERAVELLAKARRIYFFG--LGSSGLVASDLAYKLMRIGLNVVALSDTHGQL-M---QLALLTPGDVVIAISFSGYTREI 193 (281)
T ss_pred HHHHHHHHHcCCeEEEEE--echhHHHHHHHHHHHHHcCCceeEecchHHHH-H---HHHhCCCCCEEEEEeCCCCcHHH
Confidence 355678888888778888 3334444444322 1256666555554444 2 4444444 44544444554 457
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCc
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
+..+..|...++|+|.||......
T Consensus 194 i~~a~~ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 194 VEAAELAKERGAKVIAITDSADSP 217 (281)
T ss_pred HHHHHHHHHCCCcEEEEcCCCCCc
Confidence 788889999999999999874443
No 370
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=32.46 E-value=68 Score=30.25 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHHHHHHH-hcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeC
Q 044559 241 AVEAAAEFLN-KAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVM 286 (585)
Q Consensus 241 ~v~~~~~~L~-~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt 286 (585)
.+.+++..+. +.+++.++. ....+.++.++|+.+|+.+|+|++..
T Consensus 17 t~aKLAa~~~~~~~~v~lis-~D~~R~ga~eQL~~~a~~l~vp~~~~ 62 (196)
T PF00448_consen 17 TIAKLAARLKLKGKKVALIS-ADTYRIGAVEQLKTYAEILGVPFYVA 62 (196)
T ss_dssp HHHHHHHHHHHTT--EEEEE-ESTSSTHHHHHHHHHHHHHTEEEEES
T ss_pred HHHHHHHHHhhccccceeec-CCCCCccHHHHHHHHHHHhccccchh
Confidence 4555555444 444555554 45556789999999999999999863
No 371
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=32.01 E-value=3.4e+02 Score=25.62 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC--CCCeEEeCcchHHHHHHHhHHhH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE--PGLNLIGCCNELNAGYAADGYAR 103 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~--~~i~~i~~~~E~~A~~~A~Gyar 103 (585)
...++..++.|++.|++.++-.++.....|++.+.+. .+-+++..+.+.....++.....
T Consensus 82 ~avG~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~ 143 (239)
T cd06578 82 AAVGPKTAEALREAGLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRE 143 (239)
T ss_pred EEECHHHHHHHHHcCCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHH
Confidence 4667777888888888888865666667777777653 46777777777766666655443
No 372
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=31.43 E-value=1.2e+02 Score=29.99 Aligned_cols=69 Identities=9% Similarity=-0.065 Sum_probs=52.6
Q ss_pred cEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEcC
Q 044559 455 RVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFC 532 (585)
Q Consensus 455 ~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~ 532 (585)
-|+.+++|-+++|- ++.+-.|.+.++||-++.+..++.- ..+-+.+=|+ .|..|+.
T Consensus 170 lV~t~t~d~~~qyi~~MNciFaAqKq~I~Idv~~l~~~s~~-----------------LqQa~D~TGG-----~YL~v~~ 227 (314)
T KOG2487|consen 170 LVFTLTRDRALQYIPYMNCIFAAQKQNIPIDVVSLGGDSGF-----------------LQQACDITGG-----DYLHVEK 227 (314)
T ss_pred EEEEechHHHhhhhhHHHHHHHHHhcCceeEEEEecCCchH-----------------HHHHHhhcCC-----eeEecCC
Confidence 46678999999994 7788888899999999988766322 2444566666 7888888
Q ss_pred HHHHHHHHHhhcC
Q 044559 533 EEELIEAIENATG 545 (585)
Q Consensus 533 ~~eL~~aL~~a~~ 545 (585)
++.|-+-|-..+-
T Consensus 228 ~~gLLqyLlt~~~ 240 (314)
T KOG2487|consen 228 PDGLLQYLLTLLL 240 (314)
T ss_pred cchHHHHHHHHhc
Confidence 8888887776664
No 373
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=31.32 E-value=1.9e+02 Score=30.62 Aligned_cols=144 Identities=11% Similarity=0.058 Sum_probs=75.1
Q ss_pred CHHHHHHHHHhhC-----CCCCEEEecCCccccccccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEcc
Q 044559 388 RVNVLFQHIQKML-----SSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGD 462 (585)
Q Consensus 388 ~~~~~~~~l~~~l-----~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GD 462 (585)
.+..++..+.+.+ ....++++..++.-. + ++.||+++...|.||.++.-++-. .+-.|+++.|+
T Consensus 169 ~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~----I---D~VR~isN~SSG~~G~aiA~~l~~----~Ga~V~~v~~~ 237 (399)
T PRK05579 169 EPEEIVAAAERALSPKDLAGKRVLITAGPTREP----I---DPVRYITNRSSGKMGYALARAAAR----RGADVTLVSGP 237 (399)
T ss_pred CHHHHHHHHHHHhhhcccCCCEEEEeCCCcccc----c---cceeeeccCCcchHHHHHHHHHHH----CCCEEEEeCCC
Confidence 4555656555544 333455544333211 1 356799999888898877766633 45578888777
Q ss_pred chh----------cccHHHHHHHHHhCCceEEEEEeCCcceeeee--ecCC-----C--c-CCC-CCCChHHHHHHhcCC
Q 044559 463 GSF----------QVTAQDVSTMLRCGQKTIIFLINNGGYTIEVE--IHDG-----P--Y-NVI-KNWNYTGLVDAIHNG 521 (585)
Q Consensus 463 Gsf----------~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~--~~~~-----~--~-~~~-~~~d~~~la~a~G~~ 521 (585)
.+. .-+..++..++....+-.=+++||.+..-.+. ..++ . . -.+ +++|+-+-.....-
T Consensus 238 ~~~~~~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~~~~~~~~Kikk~~~~~~l~L~~~pdIl~~l~~~~~- 316 (399)
T PRK05579 238 VNLPTPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVADYRPATVAEGKIKKGEGELTLELVPNPDILAEVAALKD- 316 (399)
T ss_pred ccccCCCCcEEEccCCHHHHHHHHHHhcCCCCEEEEcccccccccccccccCccCCCCCceEEEEeCcHHHHHHHhccC-
Confidence 542 12356676666544443445667776543211 1111 1 0 011 56776554333211
Q ss_pred CC-CceeEEEcCHHHHHHHHHhh
Q 044559 522 EG-KCWTTKVFCEEELIEAIENA 543 (585)
Q Consensus 522 ~~-~~~~~~V~~~~eL~~aL~~a 543 (585)
.. .+-|+..++-+.++.|.++.
T Consensus 317 ~~~~~VGFaaEt~~~~~~A~~kl 339 (399)
T PRK05579 317 KRPFVVGFAAETGDVLEYARAKL 339 (399)
T ss_pred CCCEEEEEccCCchHHHHHHHHH
Confidence 11 13577777755555555544
No 374
>PRK02947 hypothetical protein; Provisional
Probab=31.24 E-value=1.4e+02 Score=29.31 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-C---CCeEEe----CcchH----HHHHHHhHHh-------Hhc
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-P---GLNLIG----CCNEL----NAGYAADGYA-------RSR 105 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~---~i~~i~----~~~E~----~A~~~A~Gya-------r~t 105 (585)
..++.|++.|.+.+-=++||.-++.. +...+... . .++.+. ..+.. .+.....||. ..+
T Consensus 28 ~aa~lla~~i~~a~~I~i~G~G~S~~--vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (246)
T PRK02947 28 KAADLIADSIRNGGLIYVFGTGHSHI--LAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIR 105 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHH--HHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCC
Confidence 56788888898888888888765543 33332211 0 011111 00111 1111222222 122
Q ss_pred CccEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCC
Q 044559 106 GVGACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPN 143 (585)
Q Consensus 106 g~~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~ 143 (585)
..-++++-|-.| ..+++..+..|...++|+|.||+...
T Consensus 106 ~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 106 PGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 233444333344 45578888899999999999999764
No 375
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=31.13 E-value=56 Score=28.58 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=0.0
Q ss_pred HHHHHcCCCEEEecCCCChHHHHHhhhc
Q 044559 52 RRLVQIGATDVFSVPGDFNLTLLDHLIA 79 (585)
Q Consensus 52 ~~L~~~GV~~vFg~PG~~~~~l~~al~~ 79 (585)
+.|+++|++.+|+ ||+....+++.|.+
T Consensus 102 ~~L~~~Gv~~vf~-pgt~~~~i~~~l~~ 128 (128)
T cd02072 102 KRFKEMGFDRVFA-PGTPPEEAIADLKK 128 (128)
T ss_pred HHHHHcCCCEEEC-cCCCHHHHHHHHhC
No 376
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=30.25 E-value=44 Score=34.97 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCccccc-cc-ccc--ccCCCeeeecCCcccccchhHHH-HhhhhcCCCCcEEEEEccc
Q 044559 389 VNVLFQHIQKMLSSETAVIAETGDSWFN-CQ-KLK--LPKGCGYEFQMQYGSIGWSVGAT-LGYAQSVPEKRVIACIGDG 463 (585)
Q Consensus 389 ~~~~~~~l~~~l~~~~iiv~d~G~~~~~-~~-~~~--~~~~~~~~~~~~~g~mG~~lpaA-iGaalA~p~r~vv~v~GDG 463 (585)
...++++|...|.+++|++ |.||+.+- .. +.. ..++ ..-+|.|++.. -||- .-|.+..=|+-
T Consensus 81 VD~~I~~L~p~Le~gDIiI-DGGNs~y~DT~RR~~eL~~~G--------i~FvG~GVSGGEeGA~----~GPSiMpGG~~ 147 (473)
T COG0362 81 VDAVIEQLLPLLEKGDIII-DGGNSHYKDTIRRNKELSEKG--------ILFVGMGVSGGEEGAR----HGPSIMPGGQK 147 (473)
T ss_pred HHHHHHHHHhhcCCCCEEE-eCCCcCCchHHHHHHHHHhcC--------CeEEeccccccccccc----cCCCcCCCCCH
Confidence 3568899999999999865 88988653 21 121 1222 22233333221 2221 12344444444
Q ss_pred hhcccHHHHHHH---HHhCCceEEEEEeCCcceeeeeecCC-CcCCCCCCChHHHHHHhcC
Q 044559 464 SFQVTAQDVSTM---LRCGQKTIIFLINNGGYTIEVEIHDG-PYNVIKNWNYTGLVDAIHN 520 (585)
Q Consensus 464 sf~~~~~eL~ta---~~~~lpv~ivV~NN~~~~~~~~~~~~-~~~~~~~~d~~~la~a~G~ 520 (585)
...-.+..+-+. .-.+-|-..-|..|+.....++.|+| .|. |-..+||+|++
T Consensus 148 eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYg-----DMQlIaE~Y~i 203 (473)
T COG0362 148 EAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYG-----DMQLIAEAYDI 203 (473)
T ss_pred HHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHH-----HHHHHHHHHHH
Confidence 433333333222 22367888888888887776667765 343 34556666654
No 377
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=30.09 E-value=4.4e+02 Score=24.24 Aligned_cols=100 Identities=21% Similarity=0.264 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChH--HHHHhhh-----cCCCCeEEeCc-chHHHHHHHh--HH----hH---hcCc
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNL--TLLDHLI-----AEPGLNLIGCC-NELNAGYAAD--GY----AR---SRGV 107 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~--~l~~al~-----~~~~i~~i~~~-~E~~A~~~A~--Gy----ar---~tg~ 107 (585)
..++.|++.|+.-|=--+||+-||... +|...|. +++++..|.-. |-..-..++- || +| +.|+
T Consensus 29 ~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~ 108 (176)
T COG0279 29 RAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQ 108 (176)
T ss_pred HHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCC
Confidence 568899999999988899999998743 4555542 23566666444 3333333442 32 33 3455
Q ss_pred -c-EE--EEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 044559 108 -G-AC--VVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 108 -~-v~--~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
| |+ +.||| -..|.+.++..|..-+.-+|.+||.....
T Consensus 109 ~GDvLigISTSG-NS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~ 149 (176)
T COG0279 109 PGDVLIGISTSG-NSKNVLKAIEAAKEKGMTVIALTGKDGGK 149 (176)
T ss_pred CCCEEEEEeCCC-CCHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 3 44 45555 56799999999999999999999975443
No 378
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=30.06 E-value=45 Score=27.97 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=30.1
Q ss_pred CCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCC
Q 044559 253 VKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSA 289 (585)
Q Consensus 253 ~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g 289 (585)
+|.++++|.|...+-..+.++++++..|+++-....+
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~ 38 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAIT 38 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEec
Confidence 4788999999987777899999999999987554433
No 379
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=29.61 E-value=1.8e+02 Score=30.01 Aligned_cols=95 Identities=9% Similarity=0.016 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCCEEEe--cCCCChHHHH--HhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChh-hHHHH
Q 044559 48 RHLARRLVQIGATDVFS--VPGDFNLTLL--DHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVG-GLSVL 122 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg--~PG~~~~~l~--~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG-~~n~~ 122 (585)
+.+++.|.+.++++||- +-++.+.... ..+.+..++.+.. ....-+.-......+...++++.|-.| ..+.+
T Consensus 33 ~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~~---~~~~~~~~~~~~~~~~~~lvI~iS~SGeT~e~i 109 (340)
T PRK11382 33 HAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYA---ISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVI 109 (340)
T ss_pred HHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeEE---eccHHHHhcCCcCCCCCCEEEEEcCCCCCHHHH
Confidence 45778888888886544 4333322211 1123323444322 222222222222333344444444444 44688
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCc
Q 044559 123 NAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
.++..|...+.|+|.||+.....
T Consensus 110 ~al~~ak~~Ga~~I~IT~~~~S~ 132 (340)
T PRK11382 110 KALELGRACGALTAAFTKRADSP 132 (340)
T ss_pred HHHHHHHHcCCeEEEEECCCCCh
Confidence 99999999999999999976554
No 380
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=29.55 E-value=4.3e+02 Score=24.74 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCC
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDF 69 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~ 69 (585)
..++.|++.+++.||+.|+.+-|-.
T Consensus 34 e~a~~vld~a~~~gv~~iitLgG~~ 58 (188)
T TIGR00162 34 ELVNAIIDVAKKYGARMIYTLGGYG 58 (188)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCc
Confidence 5899999999999999999998844
No 381
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=28.94 E-value=3.1e+02 Score=27.41 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHH--HHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhh-HHHHH
Q 044559 47 GRHLARRLVQIGATDVFSVPGDFNLT--LLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGG-LSVLN 123 (585)
Q Consensus 47 a~~i~~~L~~~GV~~vFg~PG~~~~~--l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~-~n~~~ 123 (585)
-+.+++.|.+..--++||+-++.... +...|.+ -++.+... ++.....++. ...+..-++++-|..|- -+++.
T Consensus 130 l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~-~g~~~~~~-~d~~~~~~~~--~~~~~~Dl~I~iS~sG~t~~~~~ 205 (292)
T PRK11337 130 FHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLR-IGVRCQAY-DDAHIMLMSA--ALLQEGDVVLVVSHSGRTSDVIE 205 (292)
T ss_pred HHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhh-CCCeEEEc-CCHHHHHHHH--hcCCCCCEEEEEeCCCCCHHHHH
Confidence 35667788888777888886554221 2223333 35655543 3322222222 22333344444455554 45778
Q ss_pred HHHHhhhcCCcEEEEeCCCCCc
Q 044559 124 AIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 124 ~l~~A~~~~~PllvI~g~~~~~ 145 (585)
.+..|...+.|+|.||+.....
T Consensus 206 ~~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 206 AVELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred HHHHHHHCCCeEEEEeCCCCCh
Confidence 8888999999999999976544
No 382
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.81 E-value=5.4e+02 Score=24.84 Aligned_cols=151 Identities=13% Similarity=0.021 Sum_probs=75.8
Q ss_pred cCCCCCcHHHHHHHHHHHc--CCCEEEecCCCC-------hHHHHHhhhcCCCCeEEeCc----chHHHHHHHhHHhHhc
Q 044559 39 VNPSESTLGRHLARRLVQI--GATDVFSVPGDF-------NLTLLDHLIAEPGLNLIGCC----NELNAGYAADGYARSR 105 (585)
Q Consensus 39 ~~~~~~~~a~~i~~~L~~~--GV~~vFg~PG~~-------~~~l~~al~~~~~i~~i~~~----~E~~A~~~A~Gyar~t 105 (585)
+......++...++.|.+. |-+.|.-+-|.. ...+.+++.+. +++.+... +...+.-.+..+-+..
T Consensus 105 V~~d~~~~g~~aa~~l~~~~~g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (274)
T cd06311 105 VAGDNYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDNERVDAFDAAIAKY-PIKILDRQYANWNRDDAFSVMQDLLTKF 183 (274)
T ss_pred EcCCcHHHHHHHHHHHHHHhCCCCeEEEEECCCCcchhHHHHHHHHHHhhC-CcEEEeccCCCCcHHHHHHHHHHHHHhC
Confidence 3334456788888888887 766666554432 23455566554 36654321 1122222222322222
Q ss_pred Cc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhc-c--eeEEEEEeCC
Q 044559 106 GV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQ-T--VTCYQAVVNN 181 (585)
Q Consensus 106 g~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~-~--~tk~~~~v~~ 181 (585)
.. -++++....-+..++.++.++-... -+.+++++-.. +..+..+ . .... ....+
T Consensus 184 ~~~~ai~~~~d~~a~g~~~al~~~g~~~-~~~ivg~d~~~-------------------~~~~~i~~g~~~~~~-~v~~~ 242 (274)
T cd06311 184 PKIDAVWAHDDDMAVGVLAAIKQAGRTD-IKFVVGGAGSK-------------------DMIKMIMDGDPLIPA-DVLYP 242 (274)
T ss_pred CCcCEEEECCCcHHHHHHHHHHHcCCCC-CceEEEeCCCH-------------------HHHHHHHCCCCceeE-EEecC
Confidence 33 4566666666666777776654332 34455544211 1122222 1 1111 11244
Q ss_pred hhhHHHHHHHHHHHhhhc-CCcEEEEecCCC
Q 044559 182 LEDAHELIDTAVSTALKE-SKPVYISVACNL 211 (585)
Q Consensus 182 ~~~~~~~l~~A~~~a~~~-~GPV~i~iP~dv 211 (585)
+......+..+++.+..+ ++|.++.+|..+
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~ 273 (274)
T cd06311 243 PSMIASAIDLTVALFQGGMPGLGQFIIPARL 273 (274)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcceecccee
Confidence 555556666666665544 678888887543
No 383
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.51 E-value=76 Score=28.70 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=29.2
Q ss_pred cCCC-EEEcCCcccccc----hHHHHHHHHHHhCCceEeCCCCc
Q 044559 252 AVKP-VLVAGPKMRVAK----ACNAFVELADACGYAVAVMPSAK 290 (585)
Q Consensus 252 a~rp-vIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~~gk 290 (585)
.+.| ++++|.-+...+ ..++.++||+++|+|.+.|....
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 5677 667887765332 45788999999999999886543
No 384
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.41 E-value=89 Score=26.63 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEe
Q 044559 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIG 87 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~ 87 (585)
..+++.+.+.|++.+...||.....+.+.+.+ .+++++.
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~-~gi~vig 107 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPGAESEELIEAARE-AGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TTS--HHHHHHHHH-TT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEcchHHHHHHHHHHH-cCCEEEe
Confidence 45667778889999999999998999988876 4788874
No 385
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=28.40 E-value=3e+02 Score=24.36 Aligned_cols=27 Identities=41% Similarity=0.571 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCC----EEEecCCCChHHHHH
Q 044559 49 HLARRLVQIGAT----DVFSVPGDFNLTLLD 75 (585)
Q Consensus 49 ~i~~~L~~~GV~----~vFg~PG~~~~~l~~ 75 (585)
...+.|+++|++ .+|=+||+...|+.-
T Consensus 21 ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~ 51 (138)
T TIGR00114 21 GAIDALKRLGAEVDNIDVIWVPGAFELPLAV 51 (138)
T ss_pred HHHHHHHHcCCCccceEEEECCcHHHHHHHH
Confidence 345789999997 799999999999876
No 386
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.17 E-value=1.8e+02 Score=24.71 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=28.8
Q ss_pred ccEEEEeCChhhH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 044559 107 VGACVVTFTVGGL-SVLNAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 107 ~~v~~~tsGpG~~-n~~~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
.-++++.|-+|-+ ..+..+..|...++|+|.||+.....
T Consensus 48 ~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 48 GDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 3455555666644 57888889999999999999976544
No 387
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=27.82 E-value=82 Score=33.54 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=38.0
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCc
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGG 491 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~ 491 (585)
++.+++||+++ +.+++..+-=.+|.+-...|..++-.++|+++++.+=++
T Consensus 68 A~~~~~GAs~a--GaRa~TaTS~~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~ 117 (407)
T PRK09622 68 AMSACVGAAAA--GGRVATATSSQGLALMVEVLYQASGMRLPIVLNLVNRAL 117 (407)
T ss_pred HHHHHHHHHhh--CcCEEeecCcchHHHHhhHHHHHHHhhCCEEEEEecccc
Confidence 56889999987 456777766666666667788899999998777776654
No 388
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=27.78 E-value=1.4e+02 Score=25.73 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCC
Q 044559 240 AAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPS 288 (585)
Q Consensus 240 ~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 288 (585)
..+.+.++.|.+++---+.++.+-......+++.++|+++++|++.-+.
T Consensus 59 ~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~ 107 (123)
T PF07905_consen 59 EELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPW 107 (123)
T ss_pred HHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCC
Confidence 3466777777777666666655544446789999999999999997543
No 389
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=27.67 E-value=3.5e+02 Score=28.21 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=37.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC----CCCeEEeCcc
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE----PGLNLIGCCN 90 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~----~~i~~i~~~~ 90 (585)
....-+++++.|+++||+.++-+-|-....+.+.+.+. ..|+|+.-..
T Consensus 31 gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~~ 82 (358)
T COG1208 31 GKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEKE 82 (358)
T ss_pred CccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCCceEEEecCC
Confidence 34678999999999999999999888888888888652 2455554444
No 390
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=27.61 E-value=42 Score=29.49 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=27.4
Q ss_pred CEEEcCCcccccchHHHHHHHHHHhCCceEe
Q 044559 255 PVLVAGPKMRVAKACNAFVELADACGYAVAV 285 (585)
Q Consensus 255 pvIi~G~g~~~~~a~~~l~~lae~~~~Pv~t 285 (585)
.|+++|.....++...++++|+++++|+.+.
T Consensus 11 VVFivGfRvLtSdtR~A~~~Ls~rL~I~Pv~ 41 (148)
T PF06711_consen 11 VVFIVGFRVLTSDTRRAIRRLSERLNIKPVY 41 (148)
T ss_pred HhheeeEEecccchHHHHHHHHHHhCCCcee
Confidence 3789999999999999999999999997653
No 391
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=27.53 E-value=3.1e+02 Score=27.94 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=52.0
Q ss_pred HHHHHHHHc-CCCEEEecCCCChHHHH--HhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCCh-hhHHHHHH
Q 044559 49 HLARRLVQI-GATDVFSVPGDFNLTLL--DHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTV-GGLSVLNA 124 (585)
Q Consensus 49 ~i~~~L~~~-GV~~vFg~PG~~~~~l~--~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGp-G~~n~~~~ 124 (585)
.+++.|.+. +-=++||+-.+.....+ ..|.. -+...+...+.... . ...+..+..-++++-|-. -..+++.+
T Consensus 38 ~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~-~--~~~~~~~~~d~~I~iS~sG~t~~~~~~ 113 (326)
T PRK10892 38 LACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAS-TGTPSFFVHPGEAA-H--GDLGMVTPQDVVIAISNSGESSEILAL 113 (326)
T ss_pred HHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhc-CCceeEEeChHHhh-c--cccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 456666655 45577776544433222 22332 35555553222111 1 111233334344444444 45578899
Q ss_pred HHHhhhcCCcEEEEeCCCCCc
Q 044559 125 IAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 125 l~~A~~~~~PllvI~g~~~~~ 145 (585)
+..|...++|+|.||+.....
T Consensus 114 ~~~ak~~g~~vi~iT~~~~s~ 134 (326)
T PRK10892 114 IPVLKRLHVPLICITGRPESS 134 (326)
T ss_pred HHHHHHCCCcEEEEECCCCCc
Confidence 999999999999999986654
No 392
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=27.51 E-value=97 Score=28.52 Aligned_cols=46 Identities=20% Similarity=0.103 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEe
Q 044559 238 LEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAV 285 (585)
Q Consensus 238 ~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~t 285 (585)
+.+.+++++++|.+++| +++.|.|....-+.....+| .++|.++..
T Consensus 19 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~ 64 (179)
T cd05005 19 DEEELDKLISAILNAKR-IFVYGAGRSGLVAKAFAMRL-MHLGLNVYV 64 (179)
T ss_pred CHHHHHHHHHHHHhCCe-EEEEecChhHHHHHHHHHHH-HhCCCeEEE
Confidence 45679999999999976 67778776432222222233 356777765
No 393
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=27.30 E-value=5.3e+02 Score=26.56 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=58.9
Q ss_pred hHHhH-hcCc-cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhccee
Q 044559 99 DGYAR-SRGV-GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVT 173 (585)
Q Consensus 99 ~Gyar-~tg~-~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~t 173 (585)
.|||. ..+. .||++..|=|++| +.-++--|..=+.|+|+++=..... .|+..+. ..-..++- -..-| +.
T Consensus 177 ia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yG-MGTs~~R--asa~teyy-kRG~y--iP 250 (394)
T KOG0225|consen 177 IAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYG-MGTSAER--ASASTEYY-KRGDY--IP 250 (394)
T ss_pred HHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCc-cCcchhh--hhcChHHH-hccCC--CC
Confidence 44553 3455 9999999999998 4455555677899999998654332 2221100 00000000 00111 11
Q ss_pred EEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecC
Q 044559 174 CYQAVVNNLEDAHELIDTAVSTALKESKPVYISVAC 209 (585)
Q Consensus 174 k~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~ 209 (585)
---+.=-+.-.+.+...-|...|.++.||..+++-.
T Consensus 251 Gl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~T 286 (394)
T KOG0225|consen 251 GLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDT 286 (394)
T ss_pred ceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 111111233445677777888888889999998863
No 394
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=27.21 E-value=92 Score=33.73 Aligned_cols=44 Identities=25% Similarity=0.212 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCc
Q 044559 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYA 282 (585)
Q Consensus 239 ~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~P 282 (585)
.+.+.+++++|.++++++|+.|.+.........+..|+..+|-.
T Consensus 252 ~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~al~~L~~~~G~~ 295 (472)
T cd02771 252 KEKAARIAARLTGAKKPLIVSGTLSGSLELIKAAANLAKALKRR 295 (472)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCcCcHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999998874445667777777776654
No 395
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=26.97 E-value=84 Score=33.30 Aligned_cols=45 Identities=7% Similarity=0.126 Sum_probs=34.6
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEE
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFL 486 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV 486 (585)
++.+++||+++ +.+++..+-=.++.+-..-|..+.-.++|+++++
T Consensus 62 A~~~~~GAs~a--GaRa~TaTS~~Gl~lm~E~l~~aag~~lP~V~vv 106 (394)
T PRK08367 62 AISACVGASAA--GVRTFTATASQGLALMHEVLFIAAGMRLPIVMAI 106 (394)
T ss_pred HHHHHHHHHhh--CCCeEeeeccchHHHHhhHHHHHHHccCCEEEEE
Confidence 56889999887 4467776666666666677889999999988877
No 396
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=26.94 E-value=2.8e+02 Score=30.71 Aligned_cols=71 Identities=20% Similarity=0.070 Sum_probs=53.7
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCC---ChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCC
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGD---FNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFT 115 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~---~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsG 115 (585)
.-++-+++.|+++|+++|.--+.+ ....|++++.+.+.=+++.-.|..+...+|.--++.+++ .+++-|..
T Consensus 321 ~~g~g~~~~f~~~Ga~~vi~ggqt~nPS~~dll~ai~~~~a~~V~iLPNn~nii~aA~qa~~~~~~~v~vvpT~s 395 (530)
T TIGR03599 321 APGEGIAELFKSLGADVVIEGGQTMNPSTEDILKAIEKVNAKNVFVLPNNKNIILAAEQAAELADKNVVVIPTKT 395 (530)
T ss_pred cCCchHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHhCCcEEEEeCCC
Confidence 456789999999999988633332 235789999877667888889998888888887788887 66665553
No 397
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.53 E-value=62 Score=26.90 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=27.8
Q ss_pred CCEEEcCCcccccchHHHHHHHHHHhCCceEeCC
Q 044559 254 KPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287 (585)
Q Consensus 254 rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 287 (585)
|.++++|+|+.++-..+.++++++..|+++-.+.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a 35 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAA 35 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4678899997766788999999999999975543
No 398
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=26.28 E-value=64 Score=34.23 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHH
Q 044559 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVEL 275 (585)
Q Consensus 239 ~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~l 275 (585)
.+.+.++++.|..+++++|+.|.+..+......+.++
T Consensus 238 ~~~i~~~a~~l~~a~~~~i~~G~g~~~~~~~~~~~~~ 274 (414)
T cd02772 238 SEEARKIAASLVSAERAAVFLGNLAQNHPQAATLRAL 274 (414)
T ss_pred HHHHHHHHHHHhcCCCeEEEEccchhcCcchHHHHHH
Confidence 4568899999999999999999888654433344433
No 399
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=26.21 E-value=80 Score=35.23 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=38.4
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcc
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~ 492 (585)
++.+|+||+++ +.+++..+-=.+|.+-...|..+.-..+|+++++.+..+-
T Consensus 249 A~~~a~GAs~a--G~Ra~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~~~R~gp 299 (562)
T TIGR03710 249 AINMAIGASYA--GARAMTATSGPGFALMTEALGLAGMTETPLVIVDVQRGGP 299 (562)
T ss_pred HHHHHHhHHhc--CCceeecCCCCChhHhHHHHhHHHhccCCEEEEEcccCCC
Confidence 56889999987 4466666666666665566777777889999999999854
No 400
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=26.15 E-value=3.6e+02 Score=26.66 Aligned_cols=88 Identities=11% Similarity=0.039 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHh----hhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChh-hHHH
Q 044559 47 GRHLARRLVQIGATDVFSVPGDFNLTLLDH----LIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVG-GLSV 121 (585)
Q Consensus 47 a~~i~~~L~~~GV~~vFg~PG~~~~~l~~a----l~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG-~~n~ 121 (585)
-+.+++.|.+..-=++||+-++. .+... +.+ -++.++...+. .+........+..-++++.|-+| ..+.
T Consensus 118 i~~~~~~i~~a~~I~i~G~G~S~--~~a~~~~~~l~~-~g~~~~~~~~~---~~~~~~~~~~~~~D~vI~iS~sG~t~~~ 191 (284)
T PRK11302 118 INRAVDLLTQAKKISFFGLGASA--AVAHDAQNKFFR-FNVPVVYFDDI---VMQRMSCMNSSDGDVVVLISHTGRTKSL 191 (284)
T ss_pred HHHHHHHHHcCCeEEEEEcchHH--HHHHHHHHHHHh-cCCceEecCCH---HHHHHHHHhCCCCCEEEEEeCCCCCHHH
Confidence 35577788877665677764333 33322 333 35666654432 11122223333344444444555 4567
Q ss_pred HHHHHHhhhcCCcEEEEeC
Q 044559 122 LNAIAGAYSENLPLICIVG 140 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g 140 (585)
+..+..|...+.|+|.||+
T Consensus 192 ~~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 192 VELAQLARENGATVIAITS 210 (284)
T ss_pred HHHHHHHHHcCCeEEEECC
Confidence 8888899999999999996
No 401
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=26.09 E-value=3.6e+02 Score=26.76 Aligned_cols=96 Identities=15% Similarity=0.080 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHh-hhcCCCCeEEeCcchHHHHHHHhHHhH--------------------
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDH-LIAEPGLNLIGCCNELNAGYAADGYAR-------------------- 103 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~a-l~~~~~i~~i~~~~E~~A~~~A~Gyar-------------------- 103 (585)
.+++.=++.|+++|+..+|.-.+.....|++. +....+-++...|.+.+-..++++...
T Consensus 100 AVG~~TA~aL~~~G~~~~~~P~~~~se~Ll~l~~~~~~g~~vLi~rg~~gr~~L~~~L~~~G~~V~~~~vY~~~~~~~~~ 179 (266)
T PRK08811 100 SVGEGTARALQACGIDEVVRPTRMDSEGLLALPLAQAPLQAVGLITAPGGRGLLAPTLQQRGARILRADVYQRVPLRLRA 179 (266)
T ss_pred EECHHHHHHHHHcCCCceeCCCCCCcHHHHhChhhhCCCCEEEEEeCCCcHHHHHHHHHHCCCEEeEEEEEeeeCCCCCH
Confidence 44555566667777766654334444445543 221123333434444333333322111
Q ss_pred -------hcCc-cEEEEeCChhhHHHHHHHHH---hhhcCCcEEEEeC
Q 044559 104 -------SRGV-GACVVTFTVGGLSVLNAIAG---AYSENLPLICIVG 140 (585)
Q Consensus 104 -------~tg~-~v~~~tsGpG~~n~~~~l~~---A~~~~~PllvI~g 140 (585)
..+. .+++.||+..+.|++..+.. .+..+.++++|+-
T Consensus 180 ~~~~~l~~~~~~d~i~ftS~sav~~f~~~l~~~~~~~l~~~~~v~is~ 227 (266)
T PRK08811 180 STLAALSRAAPRSVLALSSAEALTLILQQLPDALRRALQQRPVVASSD 227 (266)
T ss_pred HHHHHHHHhCCCCEEEEChHHHHHHHHHHhhhhHHHHHhCCCEEEeCH
Confidence 1223 56677777777777655543 2456777777653
No 402
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=26.07 E-value=1.2e+02 Score=29.37 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEcCCcccccchHHHHHHHHHHhCCc
Q 044559 238 LEAAVEAAAEFLNKA-VKPVLVAGPKMRVAKACNAFVELADACGYA 282 (585)
Q Consensus 238 ~~~~v~~~~~~L~~a-~rpvIi~G~g~~~~~a~~~l~~lae~~~~P 282 (585)
..+.++.+.+++..+ .|+.|++|.|+.. +.+..|..++|+-
T Consensus 154 a~eg~~~l~~li~~a~gri~Im~GaGV~~----~N~~~l~~~tg~~ 195 (241)
T COG3142 154 ALEGLDLLKRLIEQAKGRIIIMAGAGVRA----ENIAELVLLTGVT 195 (241)
T ss_pred hhhhHHHHHHHHHHhcCCEEEEeCCCCCH----HHHHHHHHhcCch
Confidence 345577788888776 8999999999964 5677788877753
No 403
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=25.98 E-value=3.4e+02 Score=26.58 Aligned_cols=89 Identities=12% Similarity=0.150 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHH
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNA 124 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~ 124 (585)
..++.+++.+.+.|++.|..+-|.... .+.+.+.+.++...+|...-+.+.| ...--.|.+ +||++. =
T Consensus 94 e~s~~v~~w~~~~~v~~ii~~~g~~~~----~~~e~~~v~~va~~~~~~~~l~~~~-~~~~~~G~I---~G~~g~----l 161 (244)
T COG1938 94 EISNAVVEWAEENGVEEVISLGGMPAR----LREEKPSVYGVATSEEKLEKLKDLG-AEPLEEGTI---VGPSGA----L 161 (244)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCcc----cccCCCceEEEecchhhhhHHhhcC-CCcccccee---ecccHH----H
Confidence 578899999999999999999887422 2233457889988888777777776 332222532 466543 2
Q ss_pred HHHhhhcCCcEEEEeCCCCCc
Q 044559 125 IAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 125 l~~A~~~~~PllvI~g~~~~~ 145 (585)
+.++...++|=++|-+.....
T Consensus 162 l~e~~~r~i~a~~ll~et~~~ 182 (244)
T COG1938 162 LNECLKRGIPALVLLAETFGD 182 (244)
T ss_pred HHHHHHcCCCeEEEeccccCC
Confidence 345667899988887765443
No 404
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.97 E-value=1.5e+02 Score=30.31 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCCccccCCCCCC
Q 044559 244 AAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPH 299 (585)
Q Consensus 244 ~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~ 299 (585)
++++.|...++..+|+|... +.....+..++++.++|+++.......+++..|+
T Consensus 57 ~~~~~li~~~~v~~iiG~~~--s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~ 110 (344)
T cd06348 57 NAFQTLINKDRVLAIIGPTL--SQQAFAADPIAERAGVPVVGPSNTAKGIPEIGPY 110 (344)
T ss_pred HHHHHHhhhcCceEEECCCC--cHHHHhhhHHHHhCCCCEEeccCCCCCcCCCCCe
Confidence 34444445567888888654 3355667789999999999865433333444443
No 405
>TIGR00723 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=25.91 E-value=1.5e+02 Score=27.23 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=60.1
Q ss_pred CCCCCCCCccccccCCCCCCccCCCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHH
Q 044559 18 LASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYA 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~ 97 (585)
...||++ ..+-|.+|||..-+.+ +.-+.|+..|++-+.|= |.......+++.+...+.+... =.+|+.+
T Consensus 54 ~~~~~g~--~~~gs~GPTTS~RMd~------y~~~ll~~~Gv~~~IGK-G~~~~~~~~a~k~~gaVYl~~~--GGaaAll 122 (168)
T TIGR00723 54 IVTKNGE--WEVVSVGPTTSARMNP------FEPELLEKLGVMAIIGK-GGMSKEVVEACRKYKAVYLAFP--GGCAALL 122 (168)
T ss_pred CCCCCCC--ceeEEeCCChHHHHHH------hHHHHHHhCCcEEEEEC-CCCCHHHHHHHHHCCEEEEEcC--cHHHHHH
Confidence 3445554 6788999988654332 33344444799999998 8888889999987644433322 2444444
Q ss_pred HhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhhhcCC-cEEEEe
Q 044559 98 ADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENL-PLICIV 139 (585)
Q Consensus 98 A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~~~~~-PllvI~ 139 (585)
|.. +... .|..---| .. -+|.....+.. |++|..
T Consensus 123 a~~---Ik~~~~v~~~dLG--mp---EAi~~leVedfGPliV~i 158 (168)
T TIGR00723 123 AQS---VKKVEGVAWEDLG--MP---EAIWELEVEDFGPLIVAI 158 (168)
T ss_pred Hhc---ccEEEEEeecCCC--Cc---cEEEEEEEecceeEEEEE
Confidence 433 2222 33333222 11 24445556788 888876
No 406
>PRK06091 membrane protein FdrA; Validated
Probab=25.75 E-value=2.5e+02 Score=31.10 Aligned_cols=71 Identities=18% Similarity=0.162 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHHH--cCCCEEEecCCC---------ChHHHHHhhhcCCCCeEEeCcc----hHHHHHHHhHHhHhcCcc
Q 044559 44 STLGRHLARRLVQ--IGATDVFSVPGD---------FNLTLLDHLIAEPGLNLIGCCN----ELNAGYAADGYARSRGVG 108 (585)
Q Consensus 44 ~~~a~~i~~~L~~--~GV~~vFg~PG~---------~~~~l~~al~~~~~i~~i~~~~----E~~A~~~A~Gyar~tg~~ 108 (585)
-+++..+...+.+ .|+.+++++=|. ....++++|.+++..+.|...- |...--+.+...++ +|.
T Consensus 203 Gtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~~fl~aar~~-~KP 281 (555)
T PRK06091 203 GTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRLKIINAMKAT-GKP 281 (555)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHhhC-CCC
Confidence 4667778877777 566788887665 4667888888778888887665 54443222222222 555
Q ss_pred EEEEeCC
Q 044559 109 ACVVTFT 115 (585)
Q Consensus 109 v~~~tsG 115 (585)
|++.-.|
T Consensus 282 VVvlk~G 288 (555)
T PRK06091 282 VVALFLG 288 (555)
T ss_pred EEEEEec
Confidence 5544444
No 407
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=25.27 E-value=3.5e+02 Score=27.45 Aligned_cols=135 Identities=13% Similarity=0.027 Sum_probs=0.0
Q ss_pred EEecCCccccccccccccCCCeeeecCCcc-c--ccchhHHHHhhhhcCCCCcEEEEEccchhcc--cHHHHHHHHHhCC
Q 044559 406 VIAETGDSWFNCQKLKLPKGCGYEFQMQYG-S--IGWSVGATLGYAQSVPEKRVIACIGDGSFQV--TAQDVSTMLRCGQ 480 (585)
Q Consensus 406 iv~d~G~~~~~~~~~~~~~~~~~~~~~~~g-~--mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~--~~~eL~ta~~~~l 480 (585)
+++-+|........+...++..+-.--+.| . .|..+.-.+=.-...|+.++|++.+.+.-.. +..++..+.+.+.
T Consensus 155 liSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~~K 234 (300)
T PLN00125 155 IVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEK 234 (300)
T ss_pred EEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcCCC
Q ss_pred ceEEEEEeCCc-ceeeeeecCCCcCC---CCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCC
Q 044559 481 KTIIFLINNGG-YTIEVEIHDGPYNV---IKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDC 550 (585)
Q Consensus 481 pv~ivV~NN~~-~~~~~~~~~~~~~~---~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~g 550 (585)
||+++..--.. -+... -|.+.-.. -..-.|..+.+-+|+ +++++.+||...|++.++ .++
T Consensus 235 PVV~lk~Grs~~~g~~~-sHTGala~~~~G~~~~~~a~~rq~Gv-------i~v~~~~el~~~~~~~~~--~~~ 298 (300)
T PLN00125 235 PVVAFIAGLTAPPGRRM-GHAGAIVSGGKGTAQDKIKALREAGV-------TVVESPAKIGVAMLEVFK--ERG 298 (300)
T ss_pred CEEEEEecCCCCCCCCc-cchhhhhcCCCCCHHHHHHHHHHCCC-------eEeCCHHHHHHHHHHHHH--hcc
No 408
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=25.25 E-value=65 Score=33.19 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 242 v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
.++++.+|..|+..+|+-|+|-.-+++...++++++++.
T Consensus 298 aedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~ 336 (463)
T COG1282 298 AEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLR 336 (463)
T ss_pred HHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHH
Confidence 467889999999999999999877777777777777653
No 409
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=25.08 E-value=2.4e+02 Score=21.72 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEe
Q 044559 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAV 285 (585)
Q Consensus 239 ~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~t 285 (585)
...+.++++.+.+..-.++|+-+|+. .++.....+.|+..++|++.
T Consensus 17 ~~~i~~~Ld~~~~~~~~~~lvhGga~-~GaD~iA~~wA~~~gv~~~~ 62 (71)
T PF10686_consen 17 HELIWAALDKVHARHPDMVLVHGGAP-KGADRIAARWARERGVPVIR 62 (71)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCC-CCHHHHHHHHHHHCCCeeEE
Confidence 34466666655544444445544552 36778888999999999875
No 410
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=25.01 E-value=1.3e+02 Score=28.48 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=21.9
Q ss_pred CcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCC
Q 044559 454 KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490 (585)
Q Consensus 454 r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 490 (585)
|-+|.+.|+|+++..+-+.....+....|.+||-|+.
T Consensus 3 ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~ 39 (200)
T PRK05647 3 RIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP 39 (200)
T ss_pred eEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc
Confidence 3578889999988766544332222334555555653
No 411
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=24.98 E-value=1.2e+02 Score=30.18 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=32.2
Q ss_pred HHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCC
Q 044559 247 EFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPS 288 (585)
Q Consensus 247 ~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~ 288 (585)
+.+.+.+.=+|++|.++...+....=..+|+.||||.+|...
T Consensus 105 a~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 105 AAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 344444555999999998777777777899999999998643
No 412
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=24.78 E-value=1.4e+02 Score=28.56 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcC-CCEEEcCCcccccchHHHHHHHHHH-hCCceEeCCCCcc
Q 044559 239 EAAVEAAAEFLNKAV-KPVLVAGPKMRVAKACNAFVELADA-CGYAVAVMPSAKG 291 (585)
Q Consensus 239 ~~~v~~~~~~L~~a~-rpvIi~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~gkg 291 (585)
+..+-++++++.+.+ +|-+++|--+.--++.+.=.+|.+. .++|.++...-||
T Consensus 137 PTAL~~l~~li~~g~~~PalVIG~PVGFV~a~ESKe~L~~~~~~vP~I~~~GrkG 191 (208)
T PRK08285 137 PTALFRLLEMLDAGAPRPAAILGFPVGFVGAAESKDALAADSRGVPYLIVRGRRG 191 (208)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHhccCCCCEEEEecCCC
Confidence 345778888888765 8999998766544455444555542 4999999877665
No 413
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=24.56 E-value=4.1e+02 Score=23.66 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.7
Q ss_pred HHHHHHHcCCC----EEEecCCCChHHHHH
Q 044559 50 LARRLVQIGAT----DVFSVPGDFNLTLLD 75 (585)
Q Consensus 50 i~~~L~~~GV~----~vFg~PG~~~~~l~~ 75 (585)
-.+.|+++|++ .++-+||....|+.-
T Consensus 29 a~~~l~~~gv~~~~i~v~~VPGa~EiP~a~ 58 (141)
T PLN02404 29 ALETFKRYSVKEENIDVVWVPGSFEIPVVA 58 (141)
T ss_pred HHHHHHHcCCCccceEEEEcCcHHHHHHHH
Confidence 45789999996 899999999999876
No 414
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.46 E-value=2.7e+02 Score=23.45 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=27.5
Q ss_pred ccEEEEeCChhh-HHHHHHHHHhhhcCCcEEEEeCCCCC
Q 044559 107 VGACVVTFTVGG-LSVLNAIAGAYSENLPLICIVGGPNS 144 (585)
Q Consensus 107 ~~v~~~tsGpG~-~n~~~~l~~A~~~~~PllvI~g~~~~ 144 (585)
.-++++.|-.|- .+.+.++..|...+.|+|.||+....
T Consensus 47 ~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 47 DTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 344444444554 45888899999999999999987544
No 415
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=24.46 E-value=1.1e+02 Score=32.27 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=35.2
Q ss_pred hhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCC
Q 044559 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 490 (585)
++.+|+||+++ +.+++..+-=++|.+-.--|..++-..+|+++++.+=+
T Consensus 59 A~~~a~GAs~a--G~Ra~taTSg~G~~lm~E~~~~a~~~e~P~V~~~~~R~ 107 (375)
T PRK09627 59 GISVALGASMS--GVKSMTASSGPGISLKAEQIGLGFIAEIPLVIVNVMRG 107 (375)
T ss_pred HHHHHHHHHhh--CCCEEeecCCchHHHHhhHHHHHHhccCCEEEEEeccC
Confidence 56889999987 44566666555565555567777788899999888744
No 416
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=24.22 E-value=8.7e+02 Score=25.74 Aligned_cols=156 Identities=17% Similarity=0.083 Sum_probs=85.0
Q ss_pred CCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCC
Q 044559 82 GLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160 (585)
Q Consensus 82 ~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~ 160 (585)
.+.....--||+|.+|-.-.+.-..+ +|++++.| .++...-..|+.=++|.-++.-......
T Consensus 89 ~lQpsgSFK~RGa~~~~~kla~~~~~~gViasSaG---Nha~a~Ayaa~~LgipaTIVmP~~tp~~-------------- 151 (457)
T KOG1250|consen 89 DLQPSGSFKIRGAGNALQKLAKQQKKAGVIASSAG---NHAQAAAYAARKLGIPATIVMPVATPLM-------------- 151 (457)
T ss_pred hcccccceehhhHHHHHHHHHHhhhcCceEEecCc---cHHHHHHHHHHhcCCceEEEecCCChHH--------------
Confidence 46667778899999999888877656 88777655 2244555578889999877764322210
Q ss_pred ChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHH
Q 044559 161 DFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEA 240 (585)
Q Consensus 161 ~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (585)
..+-++-... ...+ +-++..+.-..|.+.|.. .|+.||. |+|-+. .. .....
T Consensus 152 -kiq~~~nlGA----~Vil-~G~~~deAk~~a~~lAke-~gl~yI~-pfDhP~-----I~---------------aGqgT 203 (457)
T KOG1250|consen 152 -KIQRCRNLGA----TVIL-SGEDWDEAKAFAKRLAKE-NGLTYIP-PFDHPD-----IW---------------AGQGT 203 (457)
T ss_pred -HHHHHhccCC----EEEE-ecccHHHHHHHHHHHHHh-cCceecC-CCCCch-----hh---------------cCcch
Confidence 1111111111 1111 234444444555555543 4887764 454321 00 01112
Q ss_pred HHHHHHHHHHhcC-CCEEEcCCcccccchHHHHHHHHHHhCCceE
Q 044559 241 AVEAAAEFLNKAV-KPVLVAGPKMRVAKACNAFVELADACGYAVA 284 (585)
Q Consensus 241 ~v~~~~~~L~~a~-rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~ 284 (585)
...++.+.+...- -.++=+|+|....+....+++++- .+||+
T Consensus 204 ig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p--~vkII 246 (457)
T KOG1250|consen 204 IGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGP--HVKII 246 (457)
T ss_pred HHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCC--CCceE
Confidence 3445555554443 223447888877777777777663 44443
No 417
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=24.10 E-value=1e+03 Score=26.61 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=86.0
Q ss_pred CCCcHHHHHHHHHHHcCCC--EEEec----CCCChHHHHHhhh-cCCCCeEE-eCcchHHHHHHHhHHhHhcCccEEEEe
Q 044559 42 SESTLGRHLARRLVQIGAT--DVFSV----PGDFNLTLLDHLI-AEPGLNLI-GCCNELNAGYAADGYARSRGVGACVVT 113 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~--~vFg~----PG~~~~~l~~al~-~~~~i~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~t 113 (585)
+..+..+.+.+.|.+..-+ .++++ |++.- ++.+. +.|. ||+ ...-|+.|+-+|.|.|...-+.||..-
T Consensus 314 ~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtG---L~~F~~~fP~-R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIY 389 (627)
T COG1154 314 SAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTG---LVKFSKKFPD-RFFDVGIAEQHAVTFAAGLAAEGMKPVVAIY 389 (627)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCC---hHHHHHhCch-hheehhhhHHHHHHHHHHHHhCCCCCEEEEe
Confidence 3345777777777666542 34443 33332 22232 2242 444 667899999999999998777555543
Q ss_pred CChhhHH-HHH-HHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHH
Q 044559 114 FTVGGLS-VLN-AIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDT 191 (585)
Q Consensus 114 sGpG~~n-~~~-~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~ 191 (585)
|. +++ ++- =+.+-..++.||++..-.... .|.+..-|+ ...| +.+++.+.......++ + .+.+++
T Consensus 390 ST--FLQRAYDQliHDvaiqnLPV~faIDRAGi--vG~DG~TH~-----G~fD-ls~l~~iPnmvi~aP~--d-e~el~~ 456 (627)
T COG1154 390 ST--FLQRAYDQLIHDVAIQNLPVTFAIDRAGI--VGADGPTHQ-----GLFD-LSFLRCIPNMVIMAPR--D-EEELRQ 456 (627)
T ss_pred cH--HHHHHHHHHHHHHHhccCCeEEEEecCcc--cCCCCCccc-----cHHH-HHHHhcCCCcEEecCC--C-HHHHHH
Confidence 32 333 333 334566789999988643221 122111222 1223 6777777654443332 2 233455
Q ss_pred HHHHhhhc-CCcEEEEecCC
Q 044559 192 AVSTALKE-SKPVYISVACN 210 (585)
Q Consensus 192 A~~~a~~~-~GPV~i~iP~d 210 (585)
.+..|... .||+.|..|..
T Consensus 457 ml~ta~~~~~gP~AiRyPrg 476 (627)
T COG1154 457 MLYTALAQDDGPVAIRYPRG 476 (627)
T ss_pred HHHHHHhcCCCCeEEEecCC
Confidence 55566665 59999999966
No 418
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.95 E-value=2.7e+02 Score=29.45 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=40.4
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcc----------cHHHH-HHHHHhCCceEEEEEeCCcce
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQV----------TAQDV-STMLRCGQKTIIFLINNGGYT 493 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~----------~~~eL-~ta~~~~lpv~ivV~NN~~~~ 493 (585)
+.||+++...|.||++++-++-. .+-.|+++.|.++... +..++ ..+.+.-.+-.=+++||.+-.
T Consensus 201 ~VR~itN~SSG~~g~~~a~~~~~----~Ga~V~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavs 276 (390)
T TIGR00521 201 PVRFISNLSSGKMGLALAEAAYK----RGADVTLITGPVSLLTPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVA 276 (390)
T ss_pred ceeeecCCCcchHHHHHHHHHHH----CCCEEEEeCCCCccCCCCCcEEEEeccHHHHHHHHHHhhcccCCEEEEccccc
Confidence 56789999888898877666533 3557888888765431 35666 333323233233566676654
Q ss_pred e
Q 044559 494 I 494 (585)
Q Consensus 494 ~ 494 (585)
-
T Consensus 277 d 277 (390)
T TIGR00521 277 D 277 (390)
T ss_pred c
Confidence 3
No 419
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=23.55 E-value=2.1e+02 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=19.8
Q ss_pred hHHHHHHhcCCCCCceeEEEcCHHHHHHHH
Q 044559 511 YTGLVDAIHNGEGKCWTTKVFCEEELIEAI 540 (585)
Q Consensus 511 ~~~la~a~G~~~~~~~~~~V~~~~eL~~aL 540 (585)
...+|+.-+. .++.+++.+|+.+++
T Consensus 146 l~~ia~~~~g-----~~~~~~~~~~~~~~~ 170 (170)
T cd01465 146 MEAIADAGNG-----NTAYIDNLAEARKVF 170 (170)
T ss_pred HHHHHhcCCc-----eEEEeCCHHHHHhhC
Confidence 5777877666 788999999988653
No 420
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=23.37 E-value=7.1e+02 Score=28.21 Aligned_cols=140 Identities=21% Similarity=0.165 Sum_probs=84.9
Q ss_pred CCCCCCccCCCCCcHHHHHHHHHHHcCCCEEEecCC----CChHHHHHhhhcCCCCeEEeCcchHHHHHH----HhHHhH
Q 044559 32 SVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPG----DFNLTLLDHLIAEPGLNLIGCCNELNAGYA----ADGYAR 103 (585)
Q Consensus 32 ~~~~~~~~~~~~~~~a~~i~~~L~~~GV~~vFg~PG----~~~~~l~~al~~~~~i~~i~~~~E~~A~~~----A~Gyar 103 (585)
+|+--+|+.-. -.-+-|++..++++|+.|. || +....|.++..+ .+|+||.-.-|-....- |-..|-
T Consensus 82 iGk~l~PV~AY--L~ideii~iak~~~vdavH--PGYGFLSErsdFA~av~~-AGi~fiGPspeVi~~mGDKv~AR~~Ai 156 (1176)
T KOG0369|consen 82 IGKGLPPVGAY--LAIDEIISIAKKHNVDAVH--PGYGFLSERSDFAQAVQD-AGIRFIGPSPEVIDSMGDKVAARAIAI 156 (1176)
T ss_pred cccCCCchhhh--hhHHHHHHHHHHcCCCeec--CCccccccchHHHHHHHh-cCceEeCCCHHHHHHhhhHHHHHHHHH
Confidence 45554444332 3346688999999999875 55 566788888875 69999998877654431 222222
Q ss_pred hcCccEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChh
Q 044559 104 SRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLE 183 (585)
Q Consensus 104 ~tg~~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~ 183 (585)
..|..++=.|.||= +..--++.=...-+.|+|+=++--... + | -..|.+.+
T Consensus 157 ~agVpvVPGTpgPi-tt~~EA~eF~k~yG~PvI~KAAyGGGG---R--------G-----------------mRvVr~~e 207 (1176)
T KOG0369|consen 157 EAGVPVVPGTPGPI-TTVEEALEFVKEYGLPVIIKAAYGGGG---R--------G-----------------MRVVRSGE 207 (1176)
T ss_pred HcCCCccCCCCCCc-ccHHHHHHHHHhcCCcEEEeecccCCC---c--------c-----------------eEEeechh
Confidence 23444444444442 223345555667899999877532111 0 0 11345678
Q ss_pred hHHHHHHHHHHHhhh--cCCcEEE
Q 044559 184 DAHELIDTAVSTALK--ESKPVYI 205 (585)
Q Consensus 184 ~~~~~l~~A~~~a~~--~~GPV~i 205 (585)
++.+.++||+..|.. +.|-+|+
T Consensus 208 ~vee~f~Ra~SEA~aaFGnG~~Fv 231 (1176)
T KOG0369|consen 208 DVEEAFQRAYSEALAAFGNGTLFV 231 (1176)
T ss_pred hHHHHHHHHHHHHHHhcCCceeeH
Confidence 888999999988875 3454443
No 421
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.90 E-value=1.1e+02 Score=32.26 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEcCCccccc----chHHHHHHHHHHhCC
Q 044559 238 LEAAVEAAAEFLNKAVKPVLVAGPKMRVA----KACNAFVELADACGY 281 (585)
Q Consensus 238 ~~~~v~~~~~~L~~a~rpvIi~G~g~~~~----~a~~~l~~lae~~~~ 281 (585)
..+.+++++++|.++++++|+.|.|.... .....+.+++..++.
T Consensus 221 ~~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~~ 268 (415)
T cd02761 221 PAETILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALNE 268 (415)
T ss_pred CHHHHHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhCc
Confidence 35678999999999999999999888632 344566667766653
No 422
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=22.70 E-value=96 Score=24.79 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=22.6
Q ss_pred CCCEEEcCCcccccchHHHHHHHHHHhCCceEeCC
Q 044559 253 VKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287 (585)
Q Consensus 253 ~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 287 (585)
.-|.+++=+.. ...+.++++|++.|+|++..+
T Consensus 16 ~aP~VvAKG~g---~~A~~I~~~A~e~~VPi~~~~ 47 (82)
T TIGR00789 16 KAPKVVASGVG---EVAERIIEIAKKHGIPIVEDP 47 (82)
T ss_pred CCCEEEEEeCC---HHHHHHHHHHHHcCCCEEeCH
Confidence 34666643221 267899999999999998754
No 423
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.50 E-value=1.7e+02 Score=29.22 Aligned_cols=52 Identities=17% Similarity=0.083 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEcCCc-------ccc---cchHHHHHHHHHHhCCceEeCCCC
Q 044559 238 LEAAVEAAAEFLNKAVKPVLVAGPK-------MRV---AKACNAFVELADACGYAVAVMPSA 289 (585)
Q Consensus 238 ~~~~v~~~~~~L~~a~rpvIi~G~g-------~~~---~~a~~~l~~lae~~~~Pv~tt~~g 289 (585)
+.+++.+.++.|++..-+++..|.- ... .+..+.++++++++|+|++|+++.
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d 100 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMD 100 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 4566778888888888888888822 111 234578899999999999999864
No 424
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=22.45 E-value=46 Score=33.02 Aligned_cols=139 Identities=14% Similarity=0.102 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCCEEEecCCC--ChHHHHHhhhcCCCCeEEeCc----------chHHHHHHHhHHh-HhcC-ccEEEEe
Q 044559 48 RHLARRLVQIGATDVFSVPGD--FNLTLLDHLIAEPGLNLIGCC----------NELNAGYAADGYA-RSRG-VGACVVT 113 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~--~~~~l~~al~~~~~i~~i~~~----------~E~~A~~~A~Gya-r~tg-~~v~~~t 113 (585)
.+.++.+.+.|.+.|...-+. ..+=+.+.|. +..++|... +|..-+.+=.||. ++.. .+++.=|
T Consensus 40 nAaiega~~aGa~eVvVnDsHg~~~Nll~e~L~--~~a~LI~G~prp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL~HT 117 (265)
T cd00281 40 IAACEGSLAAGATQVLVKDSHDSGRNLIPERLP--EPVQLISGSGHPYCMVQGLDRSFDALLFIGYHARAGTAANVMAHS 117 (265)
T ss_pred HHHHHHHHHcCCcEEEEEcCCCCccccChhHCC--cCEEEEecCCCcchhhhccccCccEEEEEecCCcccCCCCccccc
Confidence 466788999999999988743 3333555554 456666332 2222333334543 3322 1332211
Q ss_pred CChhh----------HH-HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCCh
Q 044559 114 FTVGG----------LS-VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNL 182 (585)
Q Consensus 114 sGpG~----------~n-~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~ 182 (585)
..... .. .+++ +-|-.-++||+++|||......-+. .+ ++ ...+..=+.+.+++....+|
T Consensus 118 ~~~~~~~v~iNG~~~gE~~lna-~~Ag~~gVPV~lvsGDd~~~~ea~~-----~~--P~-~~tv~vK~~~gr~aa~~~~p 188 (265)
T cd00281 118 YTTEVSQIRINGQAIAEFHLNA-LTAGYYGVPVVMVAGDAEVCKEAKA-----YD--AQ-VETVVTKKGMGRFSVKAPSP 188 (265)
T ss_pred cccceEEEEECCEEcCHHHHHH-HHHhhcCCCEEEEecCHHHHHHHHH-----hC--CC-ceEEEEeeeeCCCccccCCH
Confidence 00011 11 1122 2244579999999999544311000 00 00 00112223344567777789
Q ss_pred hhHHHHHHHHHHHhh
Q 044559 183 EDAHELIDTAVSTAL 197 (585)
Q Consensus 183 ~~~~~~l~~A~~~a~ 197 (585)
+.+.+.|+++.+.|.
T Consensus 189 ~~a~~~I~~~a~~Al 203 (265)
T cd00281 189 QKVLRAIREGTEGSL 203 (265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998885
No 425
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=22.43 E-value=3.5e+02 Score=27.72 Aligned_cols=133 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred EEecCCccccccccccccCCCeeeecCCcccc---cchhHHHHhhhhcCCCCcEEEEEcc--chhcccHHHHHHHHHhCC
Q 044559 406 VIAETGDSWFNCQKLKLPKGCGYEFQMQYGSI---GWSVGATLGYAQSVPEKRVIACIGD--GSFQVTAQDVSTMLRCGQ 480 (585)
Q Consensus 406 iv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~m---G~~lpaAiGaalA~p~r~vv~v~GD--Gsf~~~~~eL~ta~~~~l 480 (585)
+++-+|+..+.........+..+-..-+.|.= |..+.-.+-.-...|+.++|++.|. |.---...++.-+...+.
T Consensus 174 iVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~~~~~K 253 (317)
T PTZ00187 174 IVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKNNPIKK 253 (317)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHhhcCCC
Q ss_pred ceEEEEEeCCcceeeeeecCC---CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC
Q 044559 481 KTIIFLINNGGYTIEVEIHDG---PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG 545 (585)
Q Consensus 481 pv~ivV~NN~~~~~~~~~~~~---~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~ 545 (585)
||+.++.-=..-.-.++-|.+ ....-..-.+.+..+.+|+ .++++++||.+.++++++
T Consensus 254 PVVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv-------~v~~~~~el~~~~~~~~~ 314 (317)
T PTZ00187 254 PVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGV-------RVVKSPAQLGKTMLEVMK 314 (317)
T ss_pred cEEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCC-------eEeCCHHHHHHHHHHHHH
No 426
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=22.27 E-value=68 Score=29.29 Aligned_cols=36 Identities=31% Similarity=0.293 Sum_probs=23.4
Q ss_pred hcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCC
Q 044559 251 KAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287 (585)
Q Consensus 251 ~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 287 (585)
-|++|+|=+-+... +-+.+++.+||+.+++++=...
T Consensus 3 lA~~PVISVNGN~A-AL~p~eiveLa~~~~A~iEVNL 38 (178)
T PF02006_consen 3 LAKHPVISVNGNTA-ALVPEEIVELAKATGAKIEVNL 38 (178)
T ss_pred ccCCCEEEEcccHH-HhChHHHHHHHHHhCCCEEEEc
Confidence 46788885543332 2366888888888888875543
No 427
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=22.17 E-value=1.4e+03 Score=27.23 Aligned_cols=121 Identities=14% Similarity=0.016 Sum_probs=67.5
Q ss_pred CCCeEEeCcchHHHHH--HHhHHhHhc-Ccc--EEEEeCChh-hHHHHH-HHHHhhhcCCcEEEEeCCCCCcccCCcccc
Q 044559 81 PGLNLIGCCNELNAGY--AADGYARSR-GVG--ACVVTFTVG-GLSVLN-AIAGAYSENLPLICIVGGPNSNDYGTNRIL 153 (585)
Q Consensus 81 ~~i~~i~~~~E~~A~~--~A~Gyar~t-g~~--v~~~tsGpG-~~n~~~-~l~~A~~~~~PllvI~g~~~~~~~~~~~~~ 153 (585)
++=-+-....|+++.. +|.|.|..+ |++ .+.+|..+= ..-+.- .-..+.+...++++.+.......-+.+ .-
T Consensus 564 PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG-~q 642 (891)
T PRK09405 564 DGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEG-LQ 642 (891)
T ss_pred CCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCc-cc
Confidence 4434456789999888 888877763 443 333444442 222222 112234556676666544333322222 12
Q ss_pred ccccCCCChhHHHhhhcceeE-EEEEeCChhhHHHHHHHHHHHhhhcCC--cEEEEec
Q 044559 154 HHTIGLPDFSQELRCFQTVTC-YQAVVNNLEDAHELIDTAVSTALKESK--PVYISVA 208 (585)
Q Consensus 154 ~~~~~~~~~~dq~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~G--PV~i~iP 208 (585)
||. ..+ +.+++.+.. -.+...++.++..+++.+++.+....+ |+||.+.
T Consensus 643 Hqd-----g~s-~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~ 694 (891)
T PRK09405 643 HED-----GHS-HILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVM 694 (891)
T ss_pred CCc-----hhh-HHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeC
Confidence 221 112 346776633 345566778888889998886664344 7889986
No 428
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.16 E-value=1.8e+02 Score=29.46 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCCccccCCCCCCcc
Q 044559 244 AAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFI 301 (585)
Q Consensus 244 ~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~ 301 (585)
++++.|.+.++..+++|... +.....+..++++.++|+++....-..+.+.+|+++
T Consensus 56 ~~a~~li~~~~v~aiiG~~~--s~~~~a~~~~~~~~~ip~i~~~a~~~~lt~~~~~~f 111 (332)
T cd06344 56 KVADELVKDPEILGVVGHYS--SDATLAALDIYQKAKLVLISPTSTSVKLSNPGPYFF 111 (332)
T ss_pred HHHHHHhcccCceEEEcCCC--cHHHHHHHHHHhhcCceEEccCcCchhhcCCCCcEE
Confidence 44555555567888888643 446667888999999999986443233334455543
No 429
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=22.03 E-value=97 Score=31.50 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=34.6
Q ss_pred HHHHHhCCceEEEEEeCCcceeeeeec------------CC-CcCCCCCCChHHHHHHhcC
Q 044559 473 STMLRCGQKTIIFLINNGGYTIEVEIH------------DG-PYNVIKNWNYTGLVDAIHN 520 (585)
Q Consensus 473 ~ta~~~~lpv~ivV~NN~~~~~~~~~~------------~~-~~~~~~~~d~~~la~a~G~ 520 (585)
|-+++.++|+++|.=|=.+|-|.+..- +| .++.+.....+-+|+-||+
T Consensus 203 wEL~~~GIpvtLItD~aag~~M~~g~Id~viVGADRI~~nGdvaNKIGTY~lAvlAk~~gI 263 (346)
T COG0182 203 WELVQDGIPVTLITDNAAGHLMQQGMIDAVIVGADRIAANGDVANKIGTYQLAVLAKHHGI 263 (346)
T ss_pred HHHhhcCCceEEEeccHHHHHHHhCCCcEEEEccceeecCCcchhhhhHHHHHHHHHHcCC
Confidence 566889999999887777887743211 23 3455666778889999998
No 430
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.98 E-value=4e+02 Score=26.74 Aligned_cols=71 Identities=10% Similarity=0.010 Sum_probs=51.2
Q ss_pred CCcEEEEEc--cchhccc--HHHHHHHHHhCCceEEEEEeCC-cceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCcee
Q 044559 453 EKRVIACIG--DGSFQVT--AQDVSTMLRCGQKTIIFLINNG-GYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWT 527 (585)
Q Consensus 453 ~r~vv~v~G--DGsf~~~--~~eL~ta~~~~lpv~ivV~NN~-~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~ 527 (585)
..|++++.+ |.+.+|- ++.+.+|.+.+++|-++.+... .-.+ ..++++.=|+ .|
T Consensus 146 ~~RIlii~~s~~~~~qYi~~mn~Ifaaqk~~I~Idv~~L~~e~~~~~----------------lqQa~~~TgG-----~Y 204 (279)
T TIGR00627 146 KSRILVISITPDMALQYIPLMNCIFSAQKQNIPIDVVSIGGDFTSGF----------------LQQAADITGG-----SY 204 (279)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHHHcCceEEEEEeCCccccHH----------------HHHHHHHhCC-----EE
Confidence 456777766 8888885 7778999999999999988432 0111 3566777776 77
Q ss_pred EEEcCHHHHHHHHHhhc
Q 044559 528 TKVFCEEELIEAIENAT 544 (585)
Q Consensus 528 ~~V~~~~eL~~aL~~a~ 544 (585)
..+.+.+.|.+.|-..+
T Consensus 205 ~~~~~~~~L~q~L~~~~ 221 (279)
T TIGR00627 205 LHVKKPQGLLQYLMTNM 221 (279)
T ss_pred eccCCHhHHHHHHHHhc
Confidence 77888888877776555
No 431
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=21.64 E-value=3.3e+02 Score=23.54 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=55.9
Q ss_pred ccHHHHHHHHHhCCceEEEEEeCCcc-eeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC
Q 044559 467 VTAQDVSTMLRCGQKTIIFLINNGGY-TIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG 545 (585)
Q Consensus 467 ~~~~eL~ta~~~~lpv~ivV~NN~~~-~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~ 545 (585)
....+...+.+.+---.+||-+|-.= .+ .-+|..+|+-+|+ ++..+.+.++|..++...
T Consensus 33 ~G~~~v~kaikkgkakLVilA~D~s~~~i-------------~~~~~~lc~~~~V-----p~~~~~tk~eLG~a~Gk~-- 92 (122)
T PRK04175 33 KGTNETTKAVERGIAKLVVIAEDVDPEEI-------------VAHLPLLCEEKKI-----PYVYVPSKKDLGKAAGLE-- 92 (122)
T ss_pred EcHHHHHHHHHcCCccEEEEeCCCChHHH-------------HHHHHHHHHHcCC-----CEEEECCHHHHHHHhCCC--
Confidence 34566667777665555555555421 11 1357889999999 899999999998887432
Q ss_pred CCCCCeEEEEEEcCCCCChHHHHHHHHHhhh
Q 044559 546 PKKDCLCFIEVLVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 546 ~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~ 576 (585)
.++-+-..+|.......++++.+.++.
T Consensus 93 ----~~~svvaI~d~g~a~~~~~~~~~~i~~ 119 (122)
T PRK04175 93 ----VGAAAAAIVDAGKAKELVEDIVEKVNE 119 (122)
T ss_pred ----CCeEEEEEechhhhHHHHHHHHHHHHH
Confidence 244445556776666666667666664
No 432
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=21.48 E-value=92 Score=30.44 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCCEEEcCCcccc
Q 044559 241 AVEAAAEFLNKAVKPVLVAGPKMRV 265 (585)
Q Consensus 241 ~v~~~~~~L~~a~rpvIi~G~g~~~ 265 (585)
.+++++++|.++++.+|++|.|...
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~ 26 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISA 26 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCcccc
Confidence 3678889999999999999998854
No 433
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=21.47 E-value=6.3e+02 Score=24.86 Aligned_cols=92 Identities=11% Similarity=0.007 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhH-HHHH
Q 044559 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLIA---EPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL-SVLN 123 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~-n~~~ 123 (585)
+.+++.|.+..-=++||.-+ +..+...+.. .-++.++... +...-..+ ....+..-++++.|-.|-+ ..+.
T Consensus 119 ~~~~~~i~~a~~I~i~G~G~--s~~~A~~~~~~l~~~g~~~~~~~-d~~~~~~~--~~~~~~~Dv~I~iS~sg~~~~~~~ 193 (278)
T PRK11557 119 HECVTMLRSARRIILTGIGA--SGLVAQNFAWKLMKIGINAVAER-DMHALLAT--VQALSPDDLLLAISYSGERRELNL 193 (278)
T ss_pred HHHHHHHhcCCeEEEEecCh--hHHHHHHHHHHHhhCCCeEEEcC-ChHHHHHH--HHhCCCCCEEEEEcCCCCCHHHHH
Confidence 44577788877667777633 3445554432 2355555432 22111111 1223333556666666644 4778
Q ss_pred HHHHhhhcCCcEEEEeCCCCC
Q 044559 124 AIAGAYSENLPLICIVGGPNS 144 (585)
Q Consensus 124 ~l~~A~~~~~PllvI~g~~~~ 144 (585)
.+..|...+.|+|+||+....
T Consensus 194 ~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 194 AADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred HHHHHHHcCCCEEEEcCCCCC
Confidence 888999999999999987544
No 434
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.39 E-value=1.1e+02 Score=26.88 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCEEEecCCCChHHHHHhhhc
Q 044559 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIA 79 (585)
Q Consensus 50 i~~~L~~~GV~~vFg~PG~~~~~l~~al~~ 79 (585)
+.+.|++.|++.+|+ ||+....+++.|.+
T Consensus 102 ~~~~l~~~Gv~~vF~-pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 102 VEKRFKEMGFDRVFA-PGTPPEVVIADLKK 130 (134)
T ss_pred HHHHHHHcCCCEEEC-cCCCHHHHHHHHHH
No 435
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=21.27 E-value=5.2e+02 Score=22.04 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=56.5
Q ss_pred cHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCC
Q 044559 468 TAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPK 547 (585)
Q Consensus 468 ~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~ 547 (585)
...+...+.+.+---.+||-+|-.=.- ..-+|..+|+-+++ ++..+.+.+||..++-.
T Consensus 30 G~~~v~kaikkgka~LVilA~D~s~~~------------~~~~i~~lc~~~~I-----p~~~~~sk~eLG~a~Gk----- 87 (117)
T TIGR03677 30 GTNEVTKAVERGIAKLVVIAEDVEPPE------------IVAHLPALCEEKGI-----PYVYVKKKEDLGAAAGL----- 87 (117)
T ss_pred cHHHHHHHHHcCCccEEEEeCCCCcHH------------HHHHHHHHHHHcCC-----CEEEeCCHHHHHHHhCC-----
Confidence 446666666666544445554442110 01357888999999 89999999998887732
Q ss_pred CCCeEEEEEEcCCCCChHHHHHHHHHhhh
Q 044559 548 KDCLCFIEVLVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 548 ~~gp~vIeV~v~~~~~~~~~~~~~~~~~~ 576 (585)
+.++.+-..+|.......++++.++++.
T Consensus 88 -~~~~svvaI~d~g~a~~~~~~~~~~i~~ 115 (117)
T TIGR03677 88 -EVGAASAAIVDEGKAEELLKEIIEKVEA 115 (117)
T ss_pred -CCCeEEEEEEchhhhHHHHHHHHHHHHh
Confidence 2355555667877777777777777764
No 436
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=21.24 E-value=1.2e+02 Score=30.30 Aligned_cols=46 Identities=20% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEe
Q 044559 238 LEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAV 285 (585)
Q Consensus 238 ~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~t 285 (585)
+.+.+++++++|.++++ ++++|.|....-+ ..+...-.++|+++..
T Consensus 114 d~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a-~~~~~~l~~~g~~~~~ 159 (284)
T PRK11302 114 DPSAINRAVDLLTQAKK-ISFFGLGASAAVA-HDAQNKFFRFNVPVVY 159 (284)
T ss_pred CHHHHHHHHHHHHcCCe-EEEEEcchHHHHH-HHHHHHHHhcCCceEe
Confidence 45678999999999976 7888877644323 2333333357888775
No 437
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=20.81 E-value=1.2e+02 Score=34.85 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCEEEcCCcccccc----hHHHHHHHHHHhC
Q 044559 243 EAAAEFLNKAVKPVLVAGPKMRVAK----ACNAFVELADACG 280 (585)
Q Consensus 243 ~~~~~~L~~a~rpvIi~G~g~~~~~----a~~~l~~lae~~~ 280 (585)
.+++++|.++|+|+|+.|.|+.... ....+..|+..+|
T Consensus 428 ~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G 469 (687)
T PRK09130 428 HEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVG 469 (687)
T ss_pred HHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhC
Confidence 4678899999999999999986532 2355666777766
No 438
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=20.46 E-value=7.5e+02 Score=24.40 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=57.1
Q ss_pred hHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhc---Cc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 044559 70 NLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSR---GV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 70 ~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~t---g~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
+..|.++|....++.+|--..|+|++..+....+-- .. .......|+.+--..-|+...+.+.-|=|||||=.-..
T Consensus 16 i~aL~~al~~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~~~av~GTPaDCV~lal~~l~~~~~pDLVvSGIN~G~ 95 (252)
T COG0496 16 IRALARALREGADVTVVAPDREQSGASHSLTLHEPLRVRQVDNGAYAVNGTPADCVILGLNELLKEPRPDLVVSGINAGA 95 (252)
T ss_pred HHHHHHHHhhCCCEEEEccCCCCcccccccccccCceeeEeccceEEecCChHHHHHHHHHHhccCCCCCEEEeCccCCC
Confidence 446677776445688888888999888887776533 22 22333348777777788888877888999999987766
Q ss_pred ccCCc
Q 044559 146 DYGTN 150 (585)
Q Consensus 146 ~~~~~ 150 (585)
..+.+
T Consensus 96 Nlg~d 100 (252)
T COG0496 96 NLGDD 100 (252)
T ss_pred ccccc
Confidence 66654
No 439
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=20.35 E-value=2.3e+02 Score=24.44 Aligned_cols=44 Identities=7% Similarity=0.161 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCC
Q 044559 244 AAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287 (585)
Q Consensus 244 ~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 287 (585)
+..+.|.+.+-.++++...+......+.+..+|+..++|++...
T Consensus 37 ~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~ 80 (122)
T PRK04175 37 ETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVP 80 (122)
T ss_pred HHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEEC
Confidence 44455666666677766666432346889999999999986543
No 440
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.19 E-value=1.4e+02 Score=26.22 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEe
Q 044559 240 AAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAV 285 (585)
Q Consensus 240 ~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~t 285 (585)
+.++++++.+.++++ +.++|.|....-+.+.-.+|.|..++|+..
T Consensus 1 ~~~~~~a~~~~~~~~-i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~ 45 (153)
T cd05009 1 EDIKELAEKLKEAKS-FYVLGRGPNYGTALEGALKLKETSYIHAEA 45 (153)
T ss_pred ChHHHHHHHHhccCc-EEEEcCCCCHHHHHHHHHHHHHHHhhccee
No 441
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=20.16 E-value=5e+02 Score=26.22 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCCCCccccccCCC---CCCccCCCCCcHHHHHHHHHHHcCC--CEEEecCC-----CChHHHHHhhhcC
Q 044559 11 CKPPCSDLASPPNGAVSTIQSSVP---ATPLVNPSESTLGRHLARRLVQIGA--TDVFSVPG-----DFNLTLLDHLIAE 80 (585)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~i~~~L~~~GV--~~vFg~PG-----~~~~~l~~al~~~ 80 (585)
.-|-|.-+..+..+...+.....+ .+-.+-++ -..+..+++.+.+.|+ .++.++=+ .....+++.|.++
T Consensus 120 lGPNc~Gi~~~~~~~~~~~~~~~~~~G~valiSQS-Gal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~D 198 (291)
T PRK05678 120 IGPNCPGIITPGECKIGIMPGHIHKKGRVGVVSRS-GTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEED 198 (291)
T ss_pred ECCCCCcccccccceeeecCCCCCCCCCEEEEecc-HHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhC
Confidence 458888887765543222211111 12222222 3445667788888777 66666543 3467788888888
Q ss_pred CCCeEEeCcch
Q 044559 81 PGLNLIGCCNE 91 (585)
Q Consensus 81 ~~i~~i~~~~E 91 (585)
++.+.|...=|
T Consensus 199 p~T~~I~lylE 209 (291)
T PRK05678 199 PETEAIVMIGE 209 (291)
T ss_pred CCCcEEEEEEe
Confidence 88888877666
No 442
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=20.05 E-value=98 Score=22.71 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=26.0
Q ss_pred CCcHHHHH------HHHHHHcCCCEEEecCCCChHHHHHhhhcCCCC
Q 044559 43 ESTLGRHL------ARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGL 83 (585)
Q Consensus 43 ~~~~a~~i------~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i 83 (585)
++++++++ ++.|+++||++..| |. .+|-+++.+. ++
T Consensus 2 ~~tVgeiv~~~p~~a~vf~~~gIDfCCg--G~--~~L~eA~~~~-~l 43 (56)
T PF04405_consen 2 DQTVGEIVAEDPRAARVFRKYGIDFCCG--GN--RSLEEACEEK-GL 43 (56)
T ss_pred cCCHHHHHHHChHHHHHHHHcCCcccCC--CC--chHHHHHHHc-CC
Confidence 46777766 48999999998877 43 5778887653 44
Done!