Query 044559
Match_columns 585
No_of_seqs 247 out of 1630
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wvg_A PDC, pyruvate decarboxy 100.0 2.7E-90 9.1E-95 764.1 46.8 534 44-582 3-563 (568)
2 2vbi_A Pyruvate decarboxylase; 100.0 1.8E-89 6.2E-94 757.2 51.2 530 44-581 3-554 (566)
3 2vk8_A Pyruvate decarboxylase 100.0 2.1E-89 7.3E-94 756.5 40.8 528 43-579 3-561 (563)
4 1ovm_A Indole-3-pyruvate decar 100.0 1.5E-87 5E-92 740.5 40.8 526 41-579 2-551 (552)
5 2vbf_A Branched-chain alpha-ke 100.0 4.8E-87 1.7E-91 738.4 43.4 520 41-579 22-570 (570)
6 2nxw_A Phenyl-3-pyruvate decar 100.0 9.1E-87 3.1E-91 734.6 40.5 517 43-582 20-564 (565)
7 3eya_A Pyruvate dehydrogenase 100.0 8.2E-87 2.8E-91 732.9 39.8 500 43-564 2-533 (549)
8 1ozh_A ALS, acetolactate synth 100.0 1.1E-84 3.8E-89 718.1 38.2 498 43-563 10-546 (566)
9 4feg_A Pyruvate oxidase; carba 100.0 1.1E-84 3.9E-89 722.7 38.4 500 42-561 9-547 (603)
10 1t9b_A Acetolactate synthase, 100.0 1.3E-84 4.4E-89 726.9 38.7 504 41-563 79-640 (677)
11 1ybh_A Acetolactate synthase, 100.0 1.2E-84 4.2E-89 721.6 37.9 501 42-563 10-561 (590)
12 2pgn_A Cyclohexane-1,2-dione h 100.0 2E-84 6.7E-89 719.4 32.5 501 43-565 3-552 (589)
13 2x7j_A 2-succinyl-5-enolpyruvy 100.0 9.7E-85 3.3E-89 723.9 28.7 516 44-578 31-598 (604)
14 1q6z_A BFD, BFDC, benzoylforma 100.0 5.7E-83 1.9E-87 700.0 41.4 490 43-562 1-527 (528)
15 2uz1_A Benzaldehyde lyase; thi 100.0 6.8E-84 2.3E-88 712.3 32.2 501 44-566 4-552 (563)
16 1v5e_A Pyruvate oxidase; oxido 100.0 6.8E-83 2.3E-87 706.7 37.5 494 44-562 4-541 (590)
17 3lq1_A 2-succinyl-5-enolpyruvy 100.0 2.5E-83 8.7E-88 709.0 31.0 507 43-571 10-571 (578)
18 2iht_A Carboxyethylarginine sy 100.0 1.4E-82 4.7E-87 702.8 34.2 498 43-560 11-561 (573)
19 2pan_A Glyoxylate carboligase; 100.0 7.5E-82 2.6E-86 702.7 38.8 501 44-563 27-583 (616)
20 2c31_A Oxalyl-COA decarboxylas 100.0 4.5E-83 1.5E-87 706.4 26.2 517 42-576 8-563 (568)
21 2q28_A Oxalyl-COA decarboxylas 100.0 4.2E-82 1.4E-86 698.5 29.5 506 43-566 7-550 (564)
22 3hww_A 2-succinyl-5-enolpyruvy 100.0 7.2E-81 2.5E-85 686.3 23.8 507 43-576 7-555 (556)
23 2c42_A Pyruvate-ferredoxin oxi 99.8 4.8E-19 1.7E-23 207.3 14.5 168 388-562 815-1072(1231)
24 1w85_A Pyruvate dehydrogenase 99.6 2E-16 6.8E-21 163.1 8.7 120 431-560 138-267 (368)
25 2o1x_A 1-deoxy-D-xylulose-5-ph 99.6 8.1E-16 2.8E-20 170.4 11.9 170 387-564 56-293 (629)
26 2bfd_A 2-oxoisovalerate dehydr 99.6 3.1E-16 1E-20 163.5 7.5 119 432-560 159-287 (400)
27 1umd_A E1-alpha, 2-OXO acid de 99.6 4.7E-16 1.6E-20 160.9 8.4 113 436-560 149-269 (367)
28 3l84_A Transketolase; TKT, str 99.6 8.1E-16 2.8E-20 168.8 10.5 117 432-560 111-242 (632)
29 1yd7_A 2-keto acid:ferredoxin 99.6 7.5E-16 2.6E-20 161.0 9.6 163 43-213 22-191 (395)
30 3uk1_A Transketolase; structur 99.6 1.1E-15 3.7E-20 169.5 10.4 117 432-560 152-287 (711)
31 1qs0_A 2-oxoisovalerate dehydr 99.6 1.6E-15 5.5E-20 157.9 10.7 119 432-560 178-307 (407)
32 3kom_A Transketolase; rossmann 99.6 2.5E-15 8.4E-20 166.1 10.4 118 432-560 113-249 (663)
33 3m49_A Transketolase; alpha-be 99.6 3.7E-15 1.2E-19 165.0 11.1 117 433-560 138-273 (690)
34 3mos_A Transketolase, TK; thia 99.6 4.3E-15 1.5E-19 163.5 10.8 116 432-560 118-242 (616)
35 2o1s_A 1-deoxy-D-xylulose-5-ph 99.6 1.2E-14 4.3E-19 160.8 14.3 166 387-560 54-284 (621)
36 2e6k_A Transketolase; structur 99.6 3.2E-15 1.1E-19 165.9 9.5 117 432-560 115-250 (651)
37 2r8o_A Transketolase 1, TK 1; 99.6 5.3E-15 1.8E-19 164.6 10.1 119 431-560 110-247 (669)
38 1itz_A Transketolase; calvin c 99.6 6.6E-15 2.3E-19 163.8 10.4 118 432-560 124-261 (675)
39 1gpu_A Transketolase; transfer 99.5 6.9E-15 2.3E-19 163.8 9.7 118 432-560 113-250 (680)
40 2ozl_A PDHE1-A type I, pyruvat 99.5 7.4E-15 2.5E-19 150.9 7.8 117 432-560 137-263 (365)
41 1r9j_A Transketolase; domains, 99.5 5.6E-14 1.9E-18 156.2 10.6 118 432-560 113-250 (673)
42 3cf4_G Acetyl-COA decarboxylas 99.4 1.3E-13 4.5E-18 126.8 7.1 116 241-358 23-167 (170)
43 3rim_A Transketolase, TK; TPP, 99.2 1.3E-11 4.5E-16 136.5 10.1 118 432-560 130-269 (700)
44 2yic_A 2-oxoglutarate decarbox 99.0 9.7E-11 3.3E-15 132.3 3.5 119 432-560 242-384 (868)
45 1ytl_A Acetyl-COA decarboxylas 98.9 2.6E-10 8.9E-15 104.2 1.0 59 242-302 24-87 (174)
46 2qtc_A Pyruvate dehydrogenase 98.9 2.9E-09 9.8E-14 120.7 9.3 119 431-560 188-392 (886)
47 2xt6_A 2-oxoglutarate decarbox 98.9 7.8E-10 2.7E-14 128.2 3.9 118 433-560 488-629 (1113)
48 2jgd_A 2-oxoglutarate dehydrog 98.8 4.1E-09 1.4E-13 119.8 5.8 119 432-560 318-456 (933)
49 2c42_A Pyruvate-ferredoxin oxi 98.2 1.2E-05 4.1E-10 94.6 16.6 156 43-209 6-172 (1231)
50 3ahc_A Phosphoketolase, xylulo 97.8 2.4E-05 8.1E-10 87.3 7.3 120 433-562 173-322 (845)
51 2bfd_B 2-oxoisovalerate dehydr 94.7 0.086 2.9E-06 53.3 8.9 116 84-213 68-195 (342)
52 3mos_A Transketolase, TK; thia 94.2 0.54 1.8E-05 51.4 14.5 150 48-210 321-473 (616)
53 1ybh_A Acetolactate synthase, 94.0 0.18 6E-06 55.1 10.1 118 426-559 51-172 (590)
54 2pan_A Glyoxylate carboligase; 93.9 0.23 7.9E-06 54.4 11.0 119 426-559 66-188 (616)
55 2ozl_B PDHE1-B, pyruvate dehyd 93.8 0.21 7.3E-06 50.3 9.5 114 83-211 62-187 (341)
56 2uz1_A Benzaldehyde lyase; thi 93.7 0.2 7E-06 54.2 10.0 118 426-559 42-164 (563)
57 1w85_B Pyruvate dehydrogenase 93.6 0.17 6E-06 50.6 8.5 115 84-213 51-177 (324)
58 1qs0_B 2-oxoisovalerate dehydr 93.4 0.12 4E-06 52.2 6.8 115 84-213 53-179 (338)
59 1ozh_A ALS, acetolactate synth 93.2 0.27 9.3E-06 53.3 9.8 119 425-559 48-170 (566)
60 2iht_A Carboxyethylarginine sy 93.0 0.26 8.9E-06 53.5 9.2 120 426-560 49-172 (573)
61 2r8o_A Transketolase 1, TK 1; 92.9 0.31 1.1E-05 53.9 9.8 116 84-210 403-521 (669)
62 1t9b_A Acetolactate synthase, 92.7 0.79 2.7E-05 50.7 12.8 152 390-559 86-242 (677)
63 1umd_B E1-beta, 2-OXO acid deh 92.6 0.52 1.8E-05 47.1 10.2 115 84-213 52-178 (324)
64 3l84_A Transketolase; TKT, str 92.6 0.51 1.7E-05 51.6 10.9 116 84-211 383-501 (632)
65 1v5e_A Pyruvate oxidase; oxido 92.3 0.51 1.7E-05 51.4 10.5 118 426-560 44-165 (590)
66 2o1s_A 1-deoxy-D-xylulose-5-ph 91.9 1.4 4.6E-05 48.3 13.3 152 43-211 318-480 (621)
67 1ik6_A Pyruvate dehydrogenase; 91.8 0.38 1.3E-05 49.0 8.2 116 83-213 98-225 (369)
68 2e6k_A Transketolase; structur 91.7 0.62 2.1E-05 51.3 10.2 117 83-210 397-516 (651)
69 3kom_A Transketolase; rossmann 91.5 0.95 3.3E-05 49.8 11.5 114 84-209 404-521 (663)
70 2q28_A Oxalyl-COA decarboxylas 91.3 0.37 1.3E-05 52.2 8.0 120 426-559 46-169 (564)
71 2pgn_A Cyclohexane-1,2-dione h 91.2 0.51 1.8E-05 51.3 9.0 106 441-559 56-165 (589)
72 3eya_A Pyruvate dehydrogenase 91.2 0.33 1.1E-05 52.4 7.4 118 426-559 42-162 (549)
73 2c31_A Oxalyl-COA decarboxylas 90.9 0.37 1.3E-05 52.2 7.5 120 426-559 48-171 (568)
74 1q6z_A BFD, BFDC, benzoylforma 90.8 0.26 8.9E-06 52.9 6.0 120 425-560 38-162 (528)
75 2o1x_A 1-deoxy-D-xylulose-5-ph 90.7 0.81 2.8E-05 50.2 10.0 151 43-211 321-482 (629)
76 2x7j_A 2-succinyl-5-enolpyruvy 90.6 0.41 1.4E-05 52.4 7.5 119 426-560 70-199 (604)
77 1w85_A Pyruvate dehydrogenase 90.6 0.64 2.2E-05 47.3 8.4 113 94-212 147-268 (368)
78 4feg_A Pyruvate oxidase; carba 90.3 0.28 9.5E-06 53.7 5.8 119 425-559 50-171 (603)
79 2nxw_A Phenyl-3-pyruvate decar 90.1 0.44 1.5E-05 51.6 7.2 108 442-559 73-186 (565)
80 3uk1_A Transketolase; structur 89.9 1.2 4.2E-05 49.2 10.5 115 84-210 449-566 (711)
81 1r9j_A Transketolase; domains, 89.8 0.93 3.2E-05 50.0 9.5 116 84-210 403-521 (673)
82 1itz_A Transketolase; calvin c 89.8 1.1 3.9E-05 49.4 10.2 116 84-210 415-534 (675)
83 2vbi_A Pyruvate decarboxylase; 89.7 0.5 1.7E-05 51.2 7.2 124 426-560 42-170 (566)
84 3hww_A 2-succinyl-5-enolpyruvy 89.6 0.54 1.8E-05 50.8 7.3 105 442-559 60-171 (556)
85 1gpu_A Transketolase; transfer 88.8 1.1 3.6E-05 49.7 9.1 116 84-210 410-529 (680)
86 2vk8_A Pyruvate decarboxylase 88.8 0.57 1.9E-05 50.7 6.8 123 426-560 43-171 (563)
87 2wvg_A PDC, pyruvate decarboxy 87.7 0.91 3.1E-05 49.1 7.6 124 426-560 42-170 (568)
88 3lq1_A 2-succinyl-5-enolpyruvy 87.6 0.71 2.4E-05 50.1 6.6 118 425-559 49-178 (578)
89 2bfd_A 2-oxoisovalerate dehydr 86.7 2 6.7E-05 44.2 9.0 110 95-210 168-286 (400)
90 3m49_A Transketolase; alpha-be 85.9 2.7 9.1E-05 46.4 10.0 115 84-210 428-546 (690)
91 1qs0_A 2-oxoisovalerate dehydr 85.7 1.4 4.8E-05 45.3 7.3 113 94-211 186-307 (407)
92 1ovm_A Indole-3-pyruvate decar 84.5 1.8 6.1E-05 46.6 7.7 120 426-559 44-170 (552)
93 2ozl_A PDHE1-A type I, pyruvat 84.2 5.8 0.0002 40.1 10.9 111 95-211 146-263 (365)
94 1ik6_A Pyruvate dehydrogenase; 83.6 2.7 9.4E-05 42.6 8.2 97 440-554 110-217 (369)
95 3rim_A Transketolase, TK; TPP, 83.5 3.5 0.00012 45.5 9.5 157 42-210 373-553 (700)
96 1yd7_A 2-keto acid:ferredoxin 83.4 0.91 3.1E-05 46.7 4.6 108 439-557 75-186 (395)
97 2vbf_A Branched-chain alpha-ke 81.7 1.4 4.9E-05 47.6 5.6 121 426-559 64-190 (570)
98 1umd_A E1-alpha, 2-OXO acid de 76.9 11 0.00037 38.1 10.0 111 95-211 150-269 (367)
99 2ozl_B PDHE1-B, pyruvate dehyd 76.7 2.9 0.0001 41.9 5.7 99 440-556 74-183 (341)
100 1qs0_B 2-oxoisovalerate dehydr 73.9 4.4 0.00015 40.5 6.1 98 440-555 64-172 (338)
101 2bru_C NAD(P) transhydrogenase 66.0 3.9 0.00013 35.9 3.1 39 241-279 19-57 (186)
102 1d4o_A NADP(H) transhydrogenas 63.0 4.3 0.00015 35.7 2.8 38 242-279 12-49 (184)
103 1pno_A NAD(P) transhydrogenase 62.7 3.8 0.00013 35.8 2.4 38 242-279 13-50 (180)
104 3trj_A Phosphoheptose isomeras 60.5 32 0.0011 31.1 8.7 101 45-145 34-154 (201)
105 1djl_A Transhydrogenase DIII; 60.5 4.5 0.00015 36.4 2.5 38 242-279 35-72 (207)
106 2fsv_C NAD(P) transhydrogenase 60.4 4.5 0.00015 36.2 2.5 38 242-279 36-73 (203)
107 1umd_B E1-beta, 2-OXO acid deh 58.8 15 0.0005 36.4 6.4 97 440-554 63-170 (324)
108 1tk9_A Phosphoheptose isomeras 58.3 39 0.0013 29.8 8.7 97 46-142 31-147 (188)
109 2l69_A Rossmann 2X3 fold prote 57.3 30 0.001 26.9 6.3 57 510-573 17-73 (134)
110 1w85_B Pyruvate dehydrogenase 54.5 13 0.00045 36.7 5.2 97 440-554 62-169 (324)
111 2k53_A A3DK08 protein; NESG, C 52.9 6.2 0.00021 29.9 1.9 53 40-94 3-61 (76)
112 2xbl_A Phosphoheptose isomeras 51.0 75 0.0026 28.1 9.5 99 46-144 37-155 (198)
113 1efv_A Electron transfer flavo 50.8 38 0.0013 33.2 7.8 102 255-360 199-314 (315)
114 2bfd_B 2-oxoisovalerate dehydr 50.1 18 0.0006 36.1 5.3 96 440-554 79-187 (342)
115 3rot_A ABC sugar transporter, 49.4 1.7E+02 0.0058 27.4 13.1 155 36-213 105-279 (297)
116 3jx9_A Putative phosphoheptose 47.0 47 0.0016 29.3 7.0 85 45-142 26-114 (170)
117 3l49_A ABC sugar (ribose) tran 46.9 1.8E+02 0.0062 27.0 13.3 95 37-131 101-216 (291)
118 1hqk_A 6,7-dimethyl-8-ribityll 44.7 61 0.0021 28.1 7.2 31 49-79 33-68 (154)
119 1x92_A APC5045, phosphoheptose 44.2 60 0.002 28.9 7.6 97 46-143 34-151 (199)
120 1rvv_A Riboflavin synthase; tr 43.0 61 0.0021 28.1 6.9 27 49-75 33-63 (154)
121 2k5e_A Uncharacterized protein 41.9 8.3 0.00028 28.9 1.0 43 40-84 5-53 (73)
122 2yic_A 2-oxoglutarate decarbox 41.8 75 0.0026 35.8 9.3 97 108-210 278-383 (868)
123 2yva_A DNAA initiator-associat 41.7 1.1E+02 0.0037 27.0 9.0 99 46-144 30-148 (196)
124 2keg_A PLNK; protein, peptide, 41.3 9 0.00031 22.4 0.9 14 435-448 6-19 (32)
125 2xt6_A 2-oxoglutarate decarbox 40.8 51 0.0017 38.4 7.8 97 108-210 523-628 (1113)
126 1o97_D Electron transferring f 39.7 75 0.0026 31.2 7.9 100 256-359 205-319 (320)
127 1hi9_A Dciaa, dipeptide transp 38.1 26 0.00089 33.6 4.1 139 49-198 41-203 (274)
128 1di0_A Lumazine synthase; tran 36.9 76 0.0026 27.6 6.6 27 49-75 31-61 (158)
129 1c2y_A Protein (lumazine synth 36.3 76 0.0026 27.5 6.4 27 49-75 34-63 (156)
130 3fxa_A SIS domain protein; str 35.0 44 0.0015 29.9 5.1 48 238-286 30-77 (201)
131 1efp_A ETF, protein (electron 34.6 89 0.003 30.4 7.5 98 256-357 195-306 (307)
132 2iec_A Uncharacterized protein 32.6 17 0.00059 30.2 1.6 33 530-565 37-69 (131)
133 2obx_A DMRL synthase 1, 6,7-di 32.1 79 0.0027 27.4 5.9 27 49-75 32-62 (157)
134 2b99_A Riboflavin synthase; lu 32.1 1.1E+02 0.0037 26.6 6.6 29 47-75 18-49 (156)
135 1u7z_A Coenzyme A biosynthesis 31.5 45 0.0016 30.9 4.5 65 425-493 24-98 (226)
136 4au1_A Precorrin-8X methylmuta 31.5 50 0.0017 30.6 4.7 53 239-291 158-212 (229)
137 2gk4_A Conserved hypothetical 29.9 50 0.0017 30.8 4.5 64 425-492 19-94 (232)
138 3ibs_A Conserved hypothetical 29.3 1.4E+02 0.0049 26.5 7.7 101 436-541 93-207 (218)
139 2d00_A V-type ATP synthase sub 28.9 66 0.0023 26.0 4.6 31 509-544 12-42 (109)
140 3cvj_A Putative phosphoheptose 28.4 1.6E+02 0.0055 27.0 8.0 95 46-142 31-145 (243)
141 3l6u_A ABC-type sugar transpor 28.3 3.5E+02 0.012 24.8 10.9 95 37-131 106-220 (293)
142 2ioj_A Hypothetical protein AF 27.9 55 0.0019 27.5 4.2 30 256-289 78-107 (139)
143 2jgd_A 2-oxoglutarate dehydrog 27.9 1.8E+02 0.0063 33.0 9.5 109 95-209 327-454 (933)
144 3sho_A Transcriptional regulat 27.8 1.7E+02 0.006 25.3 7.9 89 47-143 29-125 (187)
145 1e2b_A Enzyme IIB-cellobiose; 27.1 32 0.0011 27.7 2.4 34 253-286 4-37 (106)
146 2qtc_A Pyruvate dehydrogenase 24.9 4.8E+02 0.016 29.4 12.2 175 84-283 563-753 (886)
147 2l69_A Rossmann 2X3 fold prote 24.8 61 0.0021 25.1 3.3 70 468-544 34-121 (134)
148 2i2w_A Phosphoheptose isomeras 24.5 95 0.0032 28.0 5.4 99 46-144 53-170 (212)
149 3e7d_A COBH, precorrin-8X meth 24.0 95 0.0032 28.4 5.1 53 239-291 141-195 (212)
150 3zzx_A Thioredoxin; oxidoreduc 23.1 1.4E+02 0.0049 23.3 5.7 45 528-576 3-47 (105)
151 4gnr_A ABC transporter substra 23.0 1.4E+02 0.0048 28.8 6.8 54 244-299 65-118 (353)
152 4grd_A N5-CAIR mutase, phospho 22.9 91 0.0031 27.4 4.5 75 41-139 22-97 (173)
153 1kz1_A 6,7-dimethyl-8-ribityll 22.2 1.7E+02 0.0058 25.4 6.2 26 50-75 39-69 (159)
154 3ksm_A ABC-type sugar transpor 22.1 4.4E+02 0.015 23.8 12.8 90 39-128 103-209 (276)
155 1ma3_A SIR2-AF2, transcription 21.5 54 0.0018 31.0 3.1 26 240-265 3-28 (253)
156 1u11_A PURE (N5-carboxyaminoim 21.3 93 0.0032 27.6 4.3 76 41-140 31-107 (182)
157 1xmp_A PURE, phosphoribosylami 21.1 89 0.0031 27.4 4.1 76 41-140 21-97 (170)
158 2fp4_A Succinyl-COA ligase [GD 21.0 1.1E+02 0.0039 29.6 5.4 74 42-115 160-247 (305)
159 3s99_A Basic membrane lipoprot 20.9 3.5E+02 0.012 26.6 9.2 40 48-87 76-115 (356)
160 4b4k_A N5-carboxyaminoimidazol 20.8 1E+02 0.0035 27.3 4.4 76 41-140 32-108 (181)
161 3sho_A Transcriptional regulat 20.7 1.1E+02 0.0037 26.8 4.9 48 238-287 25-72 (187)
162 4f06_A Extracellular ligand-bi 20.2 77 0.0026 31.2 4.2 57 243-301 61-117 (371)
163 2xhz_A KDSD, YRBH, arabinose 5 20.2 3E+02 0.01 23.6 7.8 95 46-144 37-135 (183)
164 3da8_A Probable 5'-phosphoribo 20.2 1.3E+02 0.0045 27.5 5.3 75 455-557 15-96 (215)
165 3nxk_A Cytoplasmic L-asparagin 20.1 1.5E+02 0.0052 29.1 6.1 59 58-141 222-283 (334)
166 3k35_A NAD-dependent deacetyla 20.0 83 0.0028 30.8 4.1 30 236-265 28-57 (318)
167 1ti3_A Thioredoxin H, PTTRXH1; 20.0 2.3E+02 0.0078 21.6 6.4 47 526-574 5-51 (113)
168 3ff4_A Uncharacterized protein 20.0 1.1E+02 0.0036 25.3 4.3 38 49-87 73-110 (122)
No 1
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=2.7e-90 Score=764.13 Aligned_cols=534 Identities=44% Similarity=0.749 Sum_probs=446.3
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 123 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~ 123 (585)
|+++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||.+||++|+|||++|+++
T Consensus 3 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~~ 82 (568)
T 2wvg_A 3 YTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFD 82 (568)
T ss_dssp EEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHHH
T ss_pred cCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHH
Confidence 78999999999999999999999999999999998766899999999999999999999999988999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcE
Q 044559 124 AIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPV 203 (585)
Q Consensus 124 ~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 203 (585)
||++|+.+++|||+|||+++....+++..+||..+.+++.||.++|+++|||++++++++++++.+++|++.|.+++|||
T Consensus 83 gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV 162 (568)
T 2wvg_A 83 AIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPV 162 (568)
T ss_dssp HHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999998888777777765567779999999999999999999999999999999999988999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCce
Q 044559 204 YISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAV 283 (585)
Q Consensus 204 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv 283 (585)
||+||.|++..+ .......+....+......++.+.+++++++|.+||||+|++|.|+.++++.+++++|||++++||
T Consensus 163 ~l~iP~dv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv 240 (568)
T 2wvg_A 163 YLEIACNIASMP--CAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAV 240 (568)
T ss_dssp EEEEEGGGTTSE--ECEECCTHHHHCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCEE
T ss_pred EEEechhHhcCc--ccCCCcccccccCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHHHhCCCE
Confidence 999999997642 111001111011111122345567999999999999999999999998899999999999999999
Q ss_pred EeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccCCcc
Q 044559 284 AVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANGPAF 342 (585)
Q Consensus 284 ~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~~~~ 342 (585)
++|++|||.||++||+++|.+.|..+... .+..|..+.++.++||||.|+.+++ ...+
T Consensus 241 ~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~ 319 (568)
T 2wvg_A 241 ATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVN-GIRF 319 (568)
T ss_dssp EEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEET-TEEE
T ss_pred EEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcC-Ceec
Confidence 99999999999999999998644333221 1223443445678999999999987 5566
Q ss_pred ccccHHHHHHHHHHHhccCcchhhhhccccCCCCCC-CCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccccc
Q 044559 343 GCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQP-PKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLK 421 (585)
Q Consensus 343 ~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~ 421 (585)
.+++++.+|++|.+.+......|..|.+........ .......++++..+++.|.+.++++++++.|+|++.+...+++
T Consensus 320 ~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~ 399 (568)
T 2wvg_A 320 PSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMK 399 (568)
T ss_dssp ESCCHHHHHHHHHHHCCCCCHHHHHHHHTTCCSCCCCCCCCTTSBCCHHHHHHHHHTTCCTTEEEEECSSHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHhccccccchhhhhhhhhhcccccccCCCCCccCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHhhcc
Confidence 677899999999987754332233343221101111 1111234689999999999999999999999999875555666
Q ss_pred ccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCC
Q 044559 422 LPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDG 501 (585)
Q Consensus 422 ~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~ 501 (585)
.+++.+++.++++|+||+++|+|+|+++|+|+++|++++|||+|+|+++||+|++++++|+++||+||++|+|.+.++..
T Consensus 400 ~~~~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~ 479 (568)
T 2wvg_A 400 LPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDG 479 (568)
T ss_dssp CCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCC
T ss_pred cCCCCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHHHHHHcCCCcEEEEEECCcceEeeeeccC
Confidence 77777799999999999999999999999999999999999999999999999999999999999999999996555455
Q ss_pred CcCCCCCCChHHHHHHhcCCC----CCceeEEEcCHHHHHHHHHhhcCCCC-CCeEEEEEEcCCCCChHHHHHHHHHhhh
Q 044559 502 PYNVIKNWNYTGLVDAIHNGE----GKCWTTKVFCEEELIEAIENATGPKK-DCLCFIEVLVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 502 ~~~~~~~~d~~~la~a~G~~~----~~~~~~~V~~~~eL~~aL~~a~~~~~-~gp~vIeV~v~~~~~~~~~~~~~~~~~~ 576 (585)
.|.++.++||.++|++||+.. ...++++|++.+||.++|+++++ . ++|+||||.+++++.++.++++++.+++
T Consensus 480 ~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~~~~el~~al~~a~~--~~~gp~liev~~~~~~~~~~~~~~~~~~~~ 557 (568)
T 2wvg_A 480 PYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALA--NTDGPTLIECFIGREDCTEELVKWGKRVAA 557 (568)
T ss_dssp GGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHH--CCSSCEEEEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHhCCCcccccCCcceEEeCCHHHHHHHHHHHHh--cCCCcEEEEEEcCccccCHHHHHHHHHhHh
Confidence 566777899999999999710 01158899999999999999986 5 8999999999999999999999999999
Q ss_pred hcCCCC
Q 044559 577 ANSRPP 582 (585)
Q Consensus 577 ~~~~~~ 582 (585)
.|+++|
T Consensus 558 ~~~~~~ 563 (568)
T 2wvg_A 558 ANSRKP 563 (568)
T ss_dssp HHHCCC
T ss_pred hccCCc
Confidence 877665
No 2
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=1.8e-89 Score=757.20 Aligned_cols=530 Identities=43% Similarity=0.733 Sum_probs=446.1
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 123 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~ 123 (585)
|+++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||.+||++|+|||++|+++
T Consensus 3 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~~ 82 (566)
T 2vbi_A 3 YTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNGAAAAVVTFSVGAISAMN 82 (566)
T ss_dssp CBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHHH
T ss_pred cCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 79999999999999999999999999999999998766899999999999999999999999988999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcE
Q 044559 124 AIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPV 203 (585)
Q Consensus 124 ~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 203 (585)
||++|+.+++|||+|||+++....+.+..+||..+.+++.||.++|+++|||++++++++++++.+++|++.|.+++|||
T Consensus 83 gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 162 (566)
T 2vbi_A 83 ALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPA 162 (566)
T ss_dssp HHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999998888777777765557779999999999999999999999999999999999988999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCce
Q 044559 204 YISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAV 283 (585)
Q Consensus 204 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv 283 (585)
||+||.|++..+ .......+....+......+..+.+++++++|.+||||+|++|.|+.++++.+++++|||++++||
T Consensus 163 ~l~iP~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 240 (566)
T 2vbi_A 163 YLDIACNIASEP--CVRPGPVSSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAV 240 (566)
T ss_dssp EEEEETTTTTSB--CCEECCCSCSCCCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCEE
T ss_pred EEEechhhcCCe--ecCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCCE
Confidence 999999997642 211001111111111122345567999999999999999999999999999999999999999999
Q ss_pred EeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccCCcc
Q 044559 284 AVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANGPAF 342 (585)
Q Consensus 284 ~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~~~~ 342 (585)
++|++|||.||++||+++|.+.|..+... .+..|..+.++.++||||.|+.+++ ...+
T Consensus 241 ~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~ 319 (566)
T 2vbi_A 241 TIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVD-GRAY 319 (566)
T ss_dssp EEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEET-TEEE
T ss_pred EEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeC-Cccc
Confidence 99999999999999999998644333221 1223444446778999999999987 5556
Q ss_pred ccccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccccc
Q 044559 343 GCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKL 422 (585)
Q Consensus 343 ~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~ 422 (585)
.+++++.+|++|.+.+......|..|.+.... . ... ....++++..+++.|.+.++++++++.|+|++.+....++.
T Consensus 320 ~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~-~-~~~-~~~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~ 396 (566)
T 2vbi_A 320 DGFTLRAFLQALAEKAPARPASAQKSSVPTCS-L-TAT-SDEAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTL 396 (566)
T ss_dssp ESSCHHHHHHHHHHHCCCCCHHHHTSCCCCCC-C-CCC-CTTSCCCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHTCCC
T ss_pred CCccHHHHHHHHHHhccccccchhhhhhhhhc-c-CCC-CCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHhhhheEC
Confidence 67778999999998775433233334322111 1 111 22346899999999999999999999999998655556666
Q ss_pred cCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCC
Q 044559 423 PKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGP 502 (585)
Q Consensus 423 ~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~ 502 (585)
+++.+++.+.++|+||+++|+|+|+++|.|+++|++++|||+|+|+++||+|++++++|+++||+||++|+|.+.++...
T Consensus 397 ~~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~ 476 (566)
T 2vbi_A 397 PRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGP 476 (566)
T ss_dssp CTTCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCG
T ss_pred CCCCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEEEEECCcceEEEeeccCC
Confidence 66677898999999999999999999999999999999999999999999999999999999999999999965554556
Q ss_pred cCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCC-CCeEEEEEEcCCCCChHHHHHHHHHhhhhcCCC
Q 044559 503 YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKK-DCLCFIEVLVHKDDTSKELLEWGSRVSAANSRP 581 (585)
Q Consensus 503 ~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~-~gp~vIeV~v~~~~~~~~~~~~~~~~~~~~~~~ 581 (585)
|+++..+||.++|++||+.+..+++++|++.+||.++|+++++ . ++|+||||.+++++.++.++++++.++++++++
T Consensus 477 ~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~--~~~gp~liev~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (566)
T 2vbi_A 477 YNYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKA--NTRGPTLIECQIDRTDCTDMLVQWGRKVASTNARK 554 (566)
T ss_dssp GGCCCCCCTTTHHHHHHTTTCCCEEEEECSHHHHHHHHHHHHH--CCSSCEEEEEECCTTCCCHHHHHHHHHHHHHHTCC
T ss_pred ccCCCCCCHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHHHHh--cCCCcEEEEEEeCcccCcHHHHHHHHHhhhhcccc
Confidence 6777889999999999973222378999999999999999985 5 899999999999999999999999999988864
No 3
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=2.1e-89 Score=756.54 Aligned_cols=528 Identities=32% Similarity=0.487 Sum_probs=437.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVL 122 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~ 122 (585)
+|+++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||.+||++|+|||++|++
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~ 82 (563)
T 2vk8_A 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSAL 82 (563)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhCCcEEEEcCCCcHHHHH
Confidence 47999999999999999999999999999999999876689999999999999999999999998999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCc
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKP 202 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GP 202 (585)
+||++|+.+++|||+|||+++...++.+..+||.++...+++|.++|+++|||++++++++++++.+++|++.|.+++||
T Consensus 83 ~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GP 162 (563)
T 2vk8_A 83 NGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRP 162 (563)
T ss_dssp HHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998777777888888755556889999999999999999999999999999999988899
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCc
Q 044559 203 VYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYA 282 (585)
Q Consensus 203 V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~P 282 (585)
|||+||.|++..+.+.... +.+.........+..+.+.+++++++|.+||||+|++|.|+.++++.++|++|||++|+|
T Consensus 163 V~l~iP~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~P 241 (563)
T 2vk8_A 163 VYLGLPANLVDLNVPAKLL-QTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFP 241 (563)
T ss_dssp EEEEEETTGGGSEEEGGGG-GSCCCCSCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCC
T ss_pred EEEEechhhhcCccCCccC-cCcccccCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCC
Confidence 9999999997532111000 001011111112234456799999999999999999999998889999999999999999
Q ss_pred eEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccCCc
Q 044559 283 VAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANGPA 341 (585)
Q Consensus 283 v~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~~~ 341 (585)
|++|++|||.||++||+++|.+.|..+... .+..|..+.++.++||||+|+..++ ...
T Consensus 242 v~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~ 320 (563)
T 2vk8_A 242 AFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIR-NAT 320 (563)
T ss_dssp EEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEET-TEE
T ss_pred EEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEEC-Ccc
Confidence 999999999999999999997644332211 2223433345678999999999987 555
Q ss_pred cccccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccccc
Q 044559 342 FGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLK 421 (585)
Q Consensus 342 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~ 421 (585)
..+++++.+|++|.+.+....+.|..+.+.+ ............++++..+++.|.+.++++++++.|+|++.++..++.
T Consensus 321 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~ 399 (563)
T 2vk8_A 321 FPGVQMKFVLQKLLTTIADAAKGYKPVAVPA-RTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTT 399 (563)
T ss_dssp EETCCHHHHHHHHHHHHHHHTTTCCCCCCCC-CCCCCCCCCTTCBCCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGGSC
T ss_pred cCCcCHHHHHHHHHHhhccccchhhhhhhhh-hcccccCCCCCCCcCHHHHHHHHHHhCCCCCEEEECCchHHHHHhhcC
Confidence 6677889999999887643221111111110 010001111234689999999999999999999999999876666666
Q ss_pred ccCCCeeeecCCcccccchhHHHHhhhhcCCC----CcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeee
Q 044559 422 LPKGCGYEFQMQYGSIGWSVGATLGYAQSVPE----KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVE 497 (585)
Q Consensus 422 ~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~----r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~ 497 (585)
.+++.+++.++++|+||+++|+|+|+++|.|+ ++|++++|||+|+|+++||+|++++++|+++||+||++|+|.+.
T Consensus 400 ~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~ 479 (563)
T 2vk8_A 400 FPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIQKL 479 (563)
T ss_dssp CCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred cCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHHHHHHHHcCCCcEEEEEECCcchhhhh
Confidence 77777899999999999999999999999887 99999999999999999999999999999999999999999654
Q ss_pred ecC--CCcCCCCCCChHHHHHHhcCCCCCce---eEEEcCHHHHHHHHH-hhcCCCCCCeEEEEEEcCCCCChHHHHHHH
Q 044559 498 IHD--GPYNVIKNWNYTGLVDAIHNGEGKCW---TTKVFCEEELIEAIE-NATGPKKDCLCFIEVLVHKDDTSKELLEWG 571 (585)
Q Consensus 498 ~~~--~~~~~~~~~d~~~la~a~G~~~~~~~---~~~V~~~~eL~~aL~-~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~ 571 (585)
++. ..+.++..+||.++|++||+ + +++|++.+||.++|+ ++++ ..++|+||||.+++++.++.++.++
T Consensus 480 ~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~~~~v~~~~el~~al~~~a~~-~~~~p~liev~~~~~~~~~~~~~~~ 553 (563)
T 2vk8_A 480 IHGPKAQYNEIQGWDHLSLLPTFGA-----KDYETHRVATTGEWDKLTQDKSFN-DNSKIRMIEVMLPVFDAPQNLVEQA 553 (563)
T ss_dssp HSCTTCGGGCCCCCCGGGHHHHTTC-----SSEEEEEECBHHHHHHHHTCTTTT-SCSSEEEEEEECCTTCCCHHHHHHH
T ss_pred hhCCCCCcccCCCCCHHHHHHHhCC-----CCCcEEEecCHHHHHHHHHHHHHh-CCCCcEEEEEEeCccccCHHHHHHH
Confidence 432 24556678999999999999 7 999999999999999 7874 2347999999999999999999999
Q ss_pred HHhhhhcC
Q 044559 572 SRVSAANS 579 (585)
Q Consensus 572 ~~~~~~~~ 579 (585)
+.++++|+
T Consensus 554 ~~~~~~~~ 561 (563)
T 2vk8_A 554 KLTAATNA 561 (563)
T ss_dssp HHHHHHHH
T ss_pred HHhhhhhc
Confidence 99988766
No 4
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=1.5e-87 Score=740.53 Aligned_cols=526 Identities=30% Similarity=0.482 Sum_probs=435.6
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHH
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS 120 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n 120 (585)
+..++++++|++.|+++||++|||+||+++++|+++|.+.++|++|.++||++|+|||+||||+||.+||++|+|||++|
T Consensus 2 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~N 81 (552)
T 1ovm_A 2 RTPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELS 81 (552)
T ss_dssp -CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHH
T ss_pred CCccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhCCcEEEEccCCcHHH
Confidence 45689999999999999999999999999999999998767899999999999999999999999989999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcC
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKES 200 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 200 (585)
+++||++|+.+++|||+|||+++...++.+..+||.++...+++|.++|+++|||++++++ +++++.+++|++.|.+++
T Consensus 82 ~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~~~ 160 (552)
T 1ovm_A 82 AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLRER 160 (552)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999998777766778877654555789999999999999999 999999999999999878
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++..+ .... +.+.........+....+.+++++++|.++|||+|++|.|+.++++.+++++|+|+++
T Consensus 161 GPV~l~iP~d~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 237 (552)
T 1ovm_A 161 RPGYLMLPADVAKKA--ATPP-VNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVP 237 (552)
T ss_dssp CCEEEEEEHHHHHSB--CCCC-SSCCCCCCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSC
T ss_pred CCEEEEeehhhccCc--cCCC-cccccccCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHHHHHHHHC
Confidence 999999999986432 1111 1111111111122345667999999999999999999999998899999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccC
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANG 339 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~ 339 (585)
+||++|++|||.||++||+++|.+.|..+... .+..|..+.++.++||||+|+.+++ +
T Consensus 238 ~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~ 316 (552)
T 1ovm_A 238 MAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVG-D 316 (552)
T ss_dssp CEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEET-T
T ss_pred CCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChheeC-C
Confidence 99999999999999999999997644332211 2223443445678999999999987 5
Q ss_pred CccccccHHHHHHHHHHHhccCcchhh-hhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccc
Q 044559 340 PAFGCVLMKDFLKALSKRLKSNTTAYE-NYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQ 418 (585)
Q Consensus 340 ~~~~~~~~~~~l~~L~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~ 418 (585)
..+.+++++.+|++|.+ +......|. .+++.. . ........++++..+++.|++.++++++++.|+|++.++..
T Consensus 317 ~~~~~~~~~~~l~~L~~-l~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~ 391 (552)
T 1ovm_A 317 VWFTGIPMNQAIETLVE-LCKQHVHAGLMSSSSG-A---IPFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAI 391 (552)
T ss_dssp EEEESCCHHHHHHHHHH-HHHTSCCC------------------CCSBCCHHHHHHHHHHHCCTTCEEEECTTHHHHHHT
T ss_pred cccCCccHHHHHHHHHh-Ccccccchhhhhhhcc-c---cccCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHHHH
Confidence 55567788999999987 643222222 121110 0 00111234689999999999999999999999999876555
Q ss_pred cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeee
Q 044559 419 KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI 498 (585)
Q Consensus 419 ~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
++..+++.+++.++++|+||+++|+|+|+++|.|+++|++++|||+|+|+++||+|++++++|+++||+||++|+|.+.+
T Consensus 392 ~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~ 471 (552)
T 1ovm_A 392 DLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAI 471 (552)
T ss_dssp TCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHHH
T ss_pred hcccCCCCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHHHHHHhCCCCEEEEEECCCCeEEEee
Confidence 66667777799999999999999999999999999999999999999999999999999999999999999999996544
Q ss_pred cC--CCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHHHHhhh
Q 044559 499 HD--GPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 499 ~~--~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~ 576 (585)
+. ..|+++..+||.++|++||+. ..+++++|++.+||.++|+++++ .++|+||||.+++++.++.++++++.+++
T Consensus 472 ~~~~~~~~~~~~~d~~~~a~a~G~~-~~~~~~~v~~~~~l~~al~~a~~--~~gp~liev~~~~~~~~~~l~~~~~~~~~ 548 (552)
T 1ovm_A 472 HGAEQRYNDIALWNWTHIPQALSLD-PQSECWRVSEAEQLADVLEKVAH--HERLSLIEVMLPKADIPPLLGALTKALEA 548 (552)
T ss_dssp SCTTCGGGCCCCCCGGGSTTTSCSS-CCEEEEEECBHHHHHHHHHHHTT--CSSEEEEEEECCTTCCCHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCHHHHHHHhCCC-cCCCEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEcCcccCCHHHHHHHHHHhh
Confidence 32 245667789999999999971 11258899999999999999986 78999999999999999999999999988
Q ss_pred hcC
Q 044559 577 ANS 579 (585)
Q Consensus 577 ~~~ 579 (585)
.|+
T Consensus 549 ~~~ 551 (552)
T 1ovm_A 549 CNN 551 (552)
T ss_dssp HHC
T ss_pred hhc
Confidence 765
No 5
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=4.8e-87 Score=738.41 Aligned_cols=520 Identities=30% Similarity=0.471 Sum_probs=434.0
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHH
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS 120 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n 120 (585)
...++++++|++.|+++||++|||+||+++++|+++|.+.++|++|.++||++|+|||+||||+||.+||++|+|||++|
T Consensus 22 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG~~v~~~tsGpG~~N 101 (570)
T 2vbf_A 22 ASMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKKAAAFLTTFGVGELS 101 (570)
T ss_dssp --CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHH
T ss_pred cCcCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhCCeEEEEcCCCCHHH
Confidence 34589999999999999999999999999999999998766899999999999999999999999988999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcC
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKES 200 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 200 (585)
+++||++|+.+++|||+|||+++...++++..+||+.+..++.+|.++|+++|||++++++ +++++.+++|++.|.+++
T Consensus 102 ~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~ 180 (570)
T 2vbf_A 102 AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKER 180 (570)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999998777666677776655676799999999999999999 999999999999999888
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++..+ .... ..+.........+.. .+.+++++++|.++|||+|++|.|+.++++.++|++|+|+++
T Consensus 181 GPV~l~iP~d~~~~~--~~~~-~~~~~~~~~~~~~~~-~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 256 (570)
T 2vbf_A 181 KPVYINLPVDVAAAK--AEKP-ALSLEKESSTTNTTE-QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETK 256 (570)
T ss_dssp CCEEEEEEHHHHTSB--CCCC-SSCCC------CHHH-HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHC
T ss_pred CCEEEEcchhhhcCc--ccCC-cccccccCCCCCccH-HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHHHHHC
Confidence 999999999997532 2111 001100111111122 567999999999999999999999998899999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccC
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANG 339 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~ 339 (585)
+||++|++|||.||++||+++|.+.|..+... .+..|..+.++.++|+||+|+..++ .
T Consensus 257 ~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~ 335 (570)
T 2vbf_A 257 LPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIF-N 335 (570)
T ss_dssp CCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEET-T
T ss_pred CCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHhC-C
Confidence 99999999999999999999998654333211 1223333345678999999999987 5
Q ss_pred CccccccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccccc
Q 044559 340 PAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQK 419 (585)
Q Consensus 340 ~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~ 419 (585)
..+.+++++.+|++|.+.+.... |. |.... . . ........++++..+++.|.+.++++++++.|+|++.++..+
T Consensus 336 ~~~~~~~~~~~l~~L~~~l~~~~--~~-~~~~~-~-~-~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~ 409 (570)
T 2vbf_A 336 KVVEDFDFRAVVSSLSELKGIEY--EG-QYIDK-Q-Y-EEFIPSSAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGAST 409 (570)
T ss_dssp EEECSSCHHHHHHTGGGCCSCCC--CS-CCCCC-C-C-CCCCCCSSBCCHHHHHHHHHHHCCSSEEEEECTTHHHHHHTT
T ss_pred eeecCCCHHHHHHHHHHhccccc--cc-cchhh-h-c-cccCCCCCCcCHHHHHHHHHHhcCCCCEEEEeCCHHHHHHHh
Confidence 56667789999999987665432 21 21111 1 0 011122346899999999999999999999999998765555
Q ss_pred ccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeec
Q 044559 420 LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH 499 (585)
Q Consensus 420 ~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~ 499 (585)
+..+.+.+++.++++|+||+++|+|+|+++|.|+++|++++|||+|+|+++||+|++++++|+++||+||++|+|.+.++
T Consensus 410 ~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~ 489 (570)
T 2vbf_A 410 IFLKSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIH 489 (570)
T ss_dssp SCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHS
T ss_pred cccCCCCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCCEEEEEECCchHHHHHHh
Confidence 66667777999999999999999999999999999999999999999999999999999999999999999999965443
Q ss_pred --CCCcCCCCCCChHHHHHHhcCCCCCce-----eEEEcCHHHHHHHHHh-hcCCCCCCeEEEEEEcCCCCChHHHHHHH
Q 044559 500 --DGPYNVIKNWNYTGLVDAIHNGEGKCW-----TTKVFCEEELIEAIEN-ATGPKKDCLCFIEVLVHKDDTSKELLEWG 571 (585)
Q Consensus 500 --~~~~~~~~~~d~~~la~a~G~~~~~~~-----~~~V~~~~eL~~aL~~-a~~~~~~gp~vIeV~v~~~~~~~~~~~~~ 571 (585)
...|.++..+||.++|++||+ + +++|++.+||.++|++ ++. .++|+||||.+++++.++.+++++
T Consensus 490 ~~~~~~~~~~~~d~~~~a~a~G~-----~~~~~~~~~v~~~~el~~al~~a~~~--~~~p~liev~~~~~~~~~~~~~~~ 562 (570)
T 2vbf_A 490 GPTQSYNDIPMWNYSKLPETFGA-----TEDRVVSKIVRTENEFVSVMKEAQAD--VNRMYWIELVLEKEDAPKLLKKMG 562 (570)
T ss_dssp CTTCGGGCCCCCCGGGHHHHTTC-----CTTTEEEEEECBHHHHHHHHHHHHHC--TTSEEEEEEECCTTCCCHHHHHHH
T ss_pred ccCCCccCCCCCCHHHHHHHcCC-----CcCCcceEEecCHHHHHHHHHHHHhc--CCCcEEEEEEcCcccccHHHHHHH
Confidence 234566778999999999999 7 8999999999999998 465 789999999999999999999999
Q ss_pred HHhhhhcC
Q 044559 572 SRVSAANS 579 (585)
Q Consensus 572 ~~~~~~~~ 579 (585)
+.++++|+
T Consensus 563 ~~~~~~~~ 570 (570)
T 2vbf_A 563 KLFAEQNK 570 (570)
T ss_dssp HHHHHHTC
T ss_pred HHhhhccC
Confidence 98887653
No 6
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=9.1e-87 Score=734.58 Aligned_cols=517 Identities=22% Similarity=0.339 Sum_probs=420.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
.|+++++|++.|+++||++|||+||+++++|+++|.+.+.+++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 20 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~N~ 99 (565)
T 2nxw_A 20 HMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNM 99 (565)
T ss_dssp CCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred CcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHH
Confidence 38999999999999999999999999999999999865557899999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhH-HHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcC
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ-ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKES 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~d-q~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 200 (585)
++||++|+++++|||+|||+++....+++..+||..| ..| |.++|+++|||++++++++++++.+++|++.|.+++
T Consensus 100 ~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q---~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~ 176 (565)
T 2nxw_A 100 VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR---TLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQS 176 (565)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC----------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeecc---chhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999988887766655443 344 999999999999999999999999999999999889
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++.. +.......+ .....+...++.+++++++|.++|||+|++|.|+.++++.++|++|||++|
T Consensus 177 GPV~l~iP~Dv~~~--~~~~~~~~~----~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~ 250 (565)
T 2nxw_A 177 RPVYLEIPRNMVNA--EVEPVGDDP----AWPVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLG 250 (565)
T ss_dssp CCEEEEEEGGGTTC--BCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHC
T ss_pred CCEEEECChhhhcC--cCCCccccC----CCCCCchhhHHHHHHHHHHHHcCCCCEEEECCCcchhchHHHHHHHHHHhC
Confidence 99999999999764 221111111 111112334567899999999999999999999988889999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceeccC
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIANG 339 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~~~ 339 (585)
+||++|++|||.+|++||+++|.+.|..+... .+..|....+..++|++|.|+.+++ .
T Consensus 251 ~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~-~ 329 (565)
T 2nxw_A 251 VPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLG-Y 329 (565)
T ss_dssp SCEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTSCGGGEEEEETTEEEET-T
T ss_pred CCEEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCCceeeC-C
Confidence 99999999999999999999997644333211 1111222233468999999999887 5
Q ss_pred CccccccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCC--CCEE-EecCCccccc
Q 044559 340 PAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSS--ETAV-IAETGDSWFN 416 (585)
Q Consensus 340 ~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~--~~ii-v~d~G~~~~~ 416 (585)
....++.+..++++|.+.+......|....+ ............++++..+++.|.+.+|+ ++++ +.|+|++.++
T Consensus 330 ~~~~~~~~~~~l~~L~~~l~~~~~~w~~~~~---~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~~~iv~~~d~G~~~~~ 406 (565)
T 2nxw_A 330 HTYADIPLAGLVDALLERLPPSDRTTRGKEP---HAYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFT 406 (565)
T ss_dssp EEEESCCHHHHHHHHHHTSCCCCCCCCCSCS---SCCCCCCCCSSSBCCHHHHHHHHHHHHHTTCCCCEEEECSSHHHHH
T ss_pred cccCCccHHHHHHHHHHhccccchhhhhhhh---hhccccccCCCCccCHHHHHHHHHHhcccccCCEEEEecchHHHHH
Confidence 4555667889999998876543222221111 00000001123468999999999999999 9998 8999998755
Q ss_pred cccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeee
Q 044559 417 CQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEV 496 (585)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~ 496 (585)
...+ .+.+++.++++|+||+++|+|+|+++|.|+++|++++|||+|+|+++||+|++++++|+++||+||++|++.+
T Consensus 407 ~~~~---~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~GDG~~~~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~ 483 (565)
T 2nxw_A 407 AMDM---IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLR 483 (565)
T ss_dssp HTTS---CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEEHHHHHHHGGGGGGHHHHTCCCEEEEEECSBCHHHH
T ss_pred HHhC---CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEechHHHhhHHHHHHHHHhCCCCEEEEEECCCCcEEe
Confidence 5444 3445888899999999999999999999999999999999999999999999999999999999999999954
Q ss_pred eec-CCCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeE-EEEEEcCCCCChHHHHHHHHHh
Q 044559 497 EIH-DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLC-FIEVLVHKDDTSKELLEWGSRV 574 (585)
Q Consensus 497 ~~~-~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~-vIeV~v~~~~~~~~~~~~~~~~ 574 (585)
..+ ...|.++..+||.++|++||+ ++++|++.+||.++|+++++ .++|. ||||.+++++.++.++++.+.+
T Consensus 484 ~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~~liev~~~~~~~~~~~~~~~~~~ 556 (565)
T 2nxw_A 484 TFQPESAFNDLDDWRFADMAAGMGG-----DGVRVRTRAELKAALDKAFA--TRGRFQLIEAMIPRGVLSDTLARFVQGQ 556 (565)
T ss_dssp HHCTTCGGGBCCCCCHHHHTGGGTS-----EEEEECBHHHHHHHHHHHHH--CCSSCEEEEEECCTTCCCHHHHHHHHHH
T ss_pred eecccCCCCcCCCCCHHHHHHHcCC-----CEEEeCCHHHHHHHHHHHHh--cCCCeEEEEEEcccccCCHHHHHHHHHH
Confidence 332 345666778999999999999 99999999999999999986 67887 9999999999999999999999
Q ss_pred hhhcCCCC
Q 044559 575 SAANSRPP 582 (585)
Q Consensus 575 ~~~~~~~~ 582 (585)
+..+++++
T Consensus 557 ~~~~~~~~ 564 (565)
T 2nxw_A 557 KRLHAAPR 564 (565)
T ss_dssp HHC-----
T ss_pred HHhhcccC
Confidence 98887754
No 7
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=8.2e-87 Score=732.94 Aligned_cols=500 Identities=17% Similarity=0.200 Sum_probs=410.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
.+|++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~ 81 (549)
T 3eya_A 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHL 81 (549)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhh
Confidence 37999999999999999999999999999999999876689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCC
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK 201 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~G 201 (585)
++||++|+.+++|||+|||+++....+.+ . .|..||.++|+++|||++++.+++++++.+++|++.|.+++|
T Consensus 82 ~~gi~~A~~~~vPvl~itg~~~~~~~~~~-----~---~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~G 153 (549)
T 3eya_A 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSG-----Y---FQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRG 153 (549)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCGGGTTSC-----C---TTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCCEEEEeCCCchhhcCCC-----C---CCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999876654 2 235689999999999999999999999999999999999899
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCC
Q 044559 202 PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281 (585)
Q Consensus 202 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~ 281 (585)
||||+||.|++..+.+.... .... ....+...++++.+++++++|.+||||+|++|.|+. ++.++|++|+|++|+
T Consensus 154 PV~l~iP~dv~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~~--~a~~~l~~lae~~~~ 228 (549)
T 3eya_A 154 VSVVVLPGDVALKPAPEGAT-MHWY--HAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCA--GAHKELVEFAGKIKA 228 (549)
T ss_dssp EEEEEEEHHHHTSBCCTTCC-CCCC--CCCCCEEECCHHHHHHHHHHHHTCCSEEEEECGGGT--TCHHHHHHHHHHHTC
T ss_pred CEEEEeChhHhhcccCcccc-cccc--ccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCch--HHHHHHHHHHHHhCC
Confidence 99999999998753221110 0000 111111124567899999999999999999999983 688999999999999
Q ss_pred ceEeCCCCccccCCCCCCccccccCCCCCCc---------------ccccccccC-CCccEEEEcCCcceeccCCccc--
Q 044559 282 AVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------FSVGYSLLL-KKEKAVILQPDRVVIANGPAFG-- 343 (585)
Q Consensus 282 Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~~~~~~~~~-~~~~~i~vd~d~~~i~~~~~~~-- 343 (585)
||++|++|||+||++||+++|.+ |..+... ..+.|..+. ++.++||||.|+.+++ .....
T Consensus 229 Pv~~t~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~ 306 (549)
T 3eya_A 229 PIVHALRGKEHVEYDNPYDVGMT-GLIGFSSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPASIG-AHSKVDM 306 (549)
T ss_dssp CEEECGGGHHHHSSSCTTBCCCC-STTSCHHHHHHHHHCSEEEEESCCCCCGGGSCSSSEEEEEESCGGGTT-SSSCCSE
T ss_pred CEEECCccCcCCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCCCCCeEEEEeCCHHHhC-CCCCCCe
Confidence 99999999999999999999986 4444321 222343333 4678999999999887 33222
Q ss_pred --cccHHHHHHHHHHHhccCcc--hhhhhccccC---CCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccc
Q 044559 344 --CVLMKDFLKALSKRLKSNTT--AYENYHRIYV---PEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFN 416 (585)
Q Consensus 344 --~~~~~~~l~~L~~~l~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~~~~~ 416 (585)
..|++.+|++|.+.+..... +...|.+.+. ............++++..+++.|.+.++++++++.|+|++.+|
T Consensus 307 ~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~ 386 (549)
T 3eya_A 307 ALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVW 386 (549)
T ss_dssp EEECCHHHHHHHHGGGSCCCCCCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHSCTTCEEEECTTHHHHH
T ss_pred EEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhCCCCCEEEEcCcHHHHH
Confidence 24799999999888754321 2222211100 0000001112357999999999999999999999999999877
Q ss_pred c-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 417 C-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 417 ~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
. .++..+.+.+++.+.++|+||+++|+|+|+++++|+++||+++|||||+|+++||+|++++++|+++||+||++|++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~nN~~~g~~ 466 (549)
T 3eya_A 387 AARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFV 466 (549)
T ss_dssp HHHHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEEEEECSBCCCC
T ss_pred HHHhCccCCCCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 5 345666667799999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred eeec-----CCCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCCh
Q 044559 496 VEIH-----DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 496 ~~~~-----~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
+... ...++++..+||.++|++||+ ++++|++.+||+++|+++++ .+||+||||.+++++.+
T Consensus 467 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp~liev~~~~~~~~ 533 (549)
T 3eya_A 467 AMEMKAGGYLTDGTELHDTNFARIAEACGI-----TGIRVEKASEVDEALQRAFS--IDGPVLVDVVVAKEELA 533 (549)
T ss_dssp ------------CCBCCCCCHHHHHHHTTS-----EEEEECSGGGHHHHHHHHHH--SSSCEEEEEEBCCCCSC
T ss_pred HHHHHhcCCCCcCCcCCCCCHHHHHHHcCC-----cEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecccccc
Confidence 2211 123456678999999999999 99999999999999999986 78999999999998764
No 8
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=1.1e-84 Score=718.06 Aligned_cols=498 Identities=16% Similarity=0.186 Sum_probs=407.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
.|+++++|++.|+++||++|||+||+++++|+++|.+ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 10 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (566)
T 1ozh_A 10 WAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLD-SSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNL 88 (566)
T ss_dssp ESCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGG-SSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTT
T ss_pred cCcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHH
Confidence 3899999999999999999999999999999999987 689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++|+++++|||+|||+++....+++. +|..||.++|+++|||++++++++++++.+++|++.|.++ +
T Consensus 89 ~~~l~~A~~~~vPll~itg~~~~~~~~~~~--------~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~ 160 (566)
T 1ozh_A 89 ITGMATANSEGDPVVALGGAVKRADKAKQV--------HQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRP 160 (566)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCTTTC--------------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhcCCCEEEEeCCCccccCCCCc--------ccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998766541 2356899999999999999999999999999999999987 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++.. +............. ...++.+.+++++++|.+||||+|++|.|+.++++.+++++|||++|
T Consensus 161 GPV~l~iP~dv~~~--~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 235 (566)
T 1ozh_A 161 GSAFVSLPQDVVDG--PVSGKVLPASGAPQ---MGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSH 235 (566)
T ss_dssp CEEEEEEEHHHHHS--CEEECCCCCCCSCE---ECCSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHC
T ss_pred CeEEEEeChhhhhc--cccccccccccccC---CCCCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHC
Confidence 99999999998643 21111000000000 01234567999999999999999999999998899999999999999
Q ss_pred CceEeCCCCccccCCCCC-CccccccCCCCCCc------------------ccccccccC-CCccEEEEcCCcceeccCC
Q 044559 281 YAVAVMPSAKGLVPEHHP-HFIGTYWGAVSTAF------------------FSVGYSLLL-KKEKAVILQPDRVVIANGP 340 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp-~~~g~~~g~~~~~~------------------~~~~~~~~~-~~~~~i~vd~d~~~i~~~~ 340 (585)
+||++|++|||.+|++|| +++|.+ |..+... .+..+..|. ++.++||||.|+.+++ ..
T Consensus 236 ~Pv~~t~~~kg~~~~~~p~~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 313 (566)
T 1ozh_A 236 IPVTSTYQAAGAVNQDNFSRFAGRV-GLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWNSGNATLVHIDVLPAYEE-RN 313 (566)
T ss_dssp CCEEECGGGTTTCCTTTCTTEEEEC-SSBTTCHHHHHHHHCSEEEEESCCGGGSCGGGTCCSCSEEEEEESSCCCCB-TT
T ss_pred CCEEEccccCCcCCCCChHhhcCCC-cccCCHHHHHHHHhCCEEEEECCCCCcCCccccCCCCCcEEEEeCCHHHhC-CC
Confidence 999999999999999999 999987 4444321 111122233 3678999999999887 33
Q ss_pred ccc----cccHHHHHHHHHHHhccCc--c-hhhhhccccC--C-CCCCCCCCCCCC-cCHHHHHHHHHhhCCCCCEEEec
Q 044559 341 AFG----CVLMKDFLKALSKRLKSNT--T-AYENYHRIYV--P-EGQPPKCEPKEP-LRVNVLFQHIQKMLSSETAVIAE 409 (585)
Q Consensus 341 ~~~----~~~~~~~l~~L~~~l~~~~--~-~~~~~~~~~~--~-~~~~~~~~~~~~-i~~~~~~~~l~~~l~~~~iiv~d 409 (585)
... ..|++.+|++|.+.+.... . |+..+.+.+. . .........+.+ +++..+++.|.+.++++++++.|
T Consensus 314 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~iv~~d 393 (566)
T 1ozh_A 314 YTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIVNSDVTLTVD 393 (566)
T ss_dssp BCCSEEEESCHHHHHHHHHHTCCSCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHCCTTEEEEEC
T ss_pred CCCCEEEEeCHHHHHHHHHHhccccCCcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhCCCCCEEEEc
Confidence 332 2489999999988775422 1 2222211100 0 000000112345 99999999999999999999999
Q ss_pred CCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEe
Q 044559 410 TGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLIN 488 (585)
Q Consensus 410 ~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~N 488 (585)
+|++..|. .++...++.+++.++++|+||+++|+|+|+++|.|+++|++++|||+|+|+++||+|++++++|+++||+|
T Consensus 394 ~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~n 473 (566)
T 1ozh_A 394 MGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWV 473 (566)
T ss_dssp SSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHHHTCCEEEEEEE
T ss_pred CcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHHHHHHhCCCcEEEEEE
Confidence 99987664 44555666779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeee----cCCCc-CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCC
Q 044559 489 NGGYTIEVEI----HDGPY-NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 489 N~~~~~~~~~----~~~~~-~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
|++|+|.+.+ +++.| .++.++||.++|++||+ ++++|++.+||.++|+++++ .++|+||||.+++++.
T Consensus 474 N~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~liev~~~~~~~ 546 (566)
T 1ozh_A 474 DNGYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGA-----KGFAVESAEALEPTLRAAMD--VDGPAVVAIPVDYRDN 546 (566)
T ss_dssp CSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTS-----EEEECCSGGGHHHHHHHHHH--SSSCEEEEEEBCCTTH
T ss_pred CCchhHHHHHHHHhcCCCccCcCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCCcC
Confidence 9999994332 23445 45677999999999999 99999999999999999986 7899999999999887
No 9
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=1.1e-84 Score=722.69 Aligned_cols=500 Identities=17% Similarity=0.229 Sum_probs=407.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhH
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-PGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 119 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~ 119 (585)
..|+++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||||+||+ +||++|+|||++
T Consensus 9 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~ 88 (603)
T 4feg_A 9 TNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGT 88 (603)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHH
T ss_pred CeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCchHH
Confidence 358999999999999999999999999999999999875 579999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc
Q 044559 120 SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE 199 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~ 199 (585)
|+++||++|+.+++|||+|||+++....+++. + |..||.++|+++|||++++.+++++++.+++|++.|.++
T Consensus 89 N~~~gia~A~~~~vPvl~itG~~~~~~~~~~~-----~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~ 160 (603)
T 4feg_A 89 HLMNGLYDAREDHVPVLALIGQFGTTGMNMDT-----F---QEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAH 160 (603)
T ss_dssp TTHHHHHHHHHTTCCEEEEEEECCTTTTTSCC-----T---TCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCcccccCCCc-----c---ccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998776642 2 345889999999999999999999999999999999988
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+.+.... +.+...........++++.+++++++|.+||||+|++|.|+ .++.++|++|||++
T Consensus 161 ~GPV~l~iP~dv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~--~~a~~~l~~lae~~ 237 (603)
T 4feg_A 161 QGVAVVQIPVDLPWQQIPAEDW-YASANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTL 237 (603)
T ss_dssp TSEEEEEEETTGGGSEEETTTC-CCCGGGCCCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGG--TTCHHHHHHHHHHH
T ss_pred CCCEEEEeChhhhhccCCcccc-cccccccCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCc--hhHHHHHHHHHHHH
Confidence 9999999999998742111100 00000100111123456789999999999999999999999 56899999999999
Q ss_pred CCceEeCCCCccccCCCCCCccccccCCCCCCc---------------ccccccc----cCCCccEEEEcCCcceeccCC
Q 044559 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------FSVGYSL----LLKKEKAVILQPDRVVIANGP 340 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~~~~~~~----~~~~~~~i~vd~d~~~i~~~~ 340 (585)
++||++|++|||.||++||+++|.+ |..+... ..+.|.. +.++.++||||+|+.+++ ..
T Consensus 238 ~~PV~~t~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 315 (603)
T 4feg_A 238 KIPLMSTYPAKGIVADRYPAYLGSA-NRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLG-KR 315 (603)
T ss_dssp TCCEEECGGGTTSSCTTCTTBCCCC-SSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTTTTTCSEEEEEESCGGGTT-SS
T ss_pred CCCEEEcCccccCCCCCChhhcccC-cccCcHHHHHHHHhCCEEEEECCCCCcccccccCCCCCeEEEEeCCHHHhC-Cc
Confidence 9999999999999999999999986 4433211 1122222 345678999999999887 43
Q ss_pred cccc----ccHHHHHHHHHHHhccCcc--hhhhhccc---cCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 044559 341 AFGC----VLMKDFLKALSKRLKSNTT--AYENYHRI---YVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETG 411 (585)
Q Consensus 341 ~~~~----~~~~~~l~~L~~~l~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G 411 (585)
...+ .|++.+|++|.+.+..... ++..+.+. +.............++++..+++.|.+.++++++++.|+|
T Consensus 316 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G 395 (603)
T 4feg_A 316 HKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVG 395 (603)
T ss_dssp SCCSEEEESCHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHCCTTCEEEECSS
T ss_pred cCCCEEEEeCHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEEEECCc
Confidence 3332 4899999999988764321 21211110 0000000001224579999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCC
Q 044559 412 DSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490 (585)
Q Consensus 412 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 490 (585)
++..|. .++..+.+.+++.+.++|+||+++|+|+|++++.|+++||+++|||||+|+++||+|++++++|+++||+||+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~~a~~~~lp~~~vv~nN~ 475 (603)
T 4feg_A 396 DINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNC 475 (603)
T ss_dssp HHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECS
T ss_pred hHHHHHHHhceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHHHHHHHCcCeEEEEEECC
Confidence 998764 4456666677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeec----CC-Cc-CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhc--CCCCCCeEEEEEEcCCC
Q 044559 491 GYTIEVEIH----DG-PY-NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENAT--GPKKDCLCFIEVLVHKD 561 (585)
Q Consensus 491 ~~~~~~~~~----~~-~~-~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~--~~~~~gp~vIeV~v~~~ 561 (585)
+|++.+... .. .+ ..+..+||.++|++||+ ++++|++.++|.++|++++ + .+||+||||.+++.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~~~--~~gP~lIev~~~~~ 547 (603)
T 4feg_A 476 QYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHM-----QAFRVNKIEQLPDVFEQAKAIA--QHEPVLIDAVITGD 547 (603)
T ss_dssp BCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTC-----EEEEECBGGGHHHHHHHHHHHT--TTSCEEEEEECCCC
T ss_pred chHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHHhc--CCCcEEEEEEeCCC
Confidence 999832211 22 22 34578999999999999 9999999999999999998 7 88999999999764
No 10
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=1.3e-84 Score=726.92 Aligned_cols=504 Identities=19% Similarity=0.266 Sum_probs=404.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhH
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 119 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~ 119 (585)
...|+++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++
T Consensus 79 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~ 158 (677)
T 1t9b_A 79 FVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGAT 158 (677)
T ss_dssp TTTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHH
T ss_pred ccCCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHH
Confidence 3458999999999999999999999999999999999876789999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc
Q 044559 120 SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE 199 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~ 199 (585)
|+++||++|+++++|||+|||+++....+.+. .|..||..+|+++|||++++.+++++++.+++||++|.++
T Consensus 159 N~~~gia~A~~d~vPllvItG~~~~~~~g~~a--------~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~g 230 (677)
T 1t9b_A 159 NVVTPMADAFADGIPMVVFTGQVPTSAIGTDA--------FQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSG 230 (677)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCTTTTTSCC--------TTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChhhcCCCC--------ccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998776652 2456899999999999999999999999999999999986
Q ss_pred -CCcEEEEecCCCCCCCC--CCCCCCCCCCc-C-CCC-CCChhhHHHHHHHHHHHHHhcCCCEEEcCCccccc-chHHHH
Q 044559 200 -SKPVYISVACNLPAIPH--PTFSREPVPFS-L-SPK-LSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVA-KACNAF 272 (585)
Q Consensus 200 -~GPV~i~iP~dv~~~~~--~~~~~~~~~~~-~-~~~-~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~-~a~~~l 272 (585)
+|||||+||.|++..+. +.......+.. . .+. ........+.+++++++|.+||||+|++|.|+.++ ++.++|
T Consensus 231 rpGPV~l~lP~Dv~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l 310 (677)
T 1t9b_A 231 RPGPVLVDLPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLL 310 (677)
T ss_dssp SCCEEEEEEEHHHHHSBCCSCBC--------------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHH
T ss_pred CCceEEEEcCHHHhhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHH
Confidence 79999999999865321 10000000000 0 000 00011235679999999999999999999999766 467999
Q ss_pred HHHHHHhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCcc------
Q 044559 273 VELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEK------ 325 (585)
Q Consensus 273 ~~lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~------ 325 (585)
++|||++++||++|++|||.||++||+++|.. |..+... .+..+..+.++.+
T Consensus 311 ~~lae~~~~PV~tt~~gkg~~~~~hpl~lG~~-G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~ 389 (677)
T 1t9b_A 311 KELSDRAQIPVTTTLQGLGSFDQEDPKSLDML-GMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEG 389 (677)
T ss_dssp HHHHHHTTCCEEECGGGTTSSCTTSTTEEEEC-STTSCHHHHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTT
T ss_pred HHHHHHhCCCeeeccccCccCCCCCccccCcC-CccCcHHHHHHHhcCCEEEEECCccCcccccCccccCcccccccccC
Confidence 99999999999999999999999999998875 3322210 1222333444455
Q ss_pred ---EEEEcCCcceeccCCccc----cccHHHHHHHHHHHhcc-C-cchh-hh---hccccCCCCCCCCCCCCCCcCHHHH
Q 044559 326 ---AVILQPDRVVIANGPAFG----CVLMKDFLKALSKRLKS-N-TTAY-EN---YHRIYVPEGQPPKCEPKEPLRVNVL 392 (585)
Q Consensus 326 ---~i~vd~d~~~i~~~~~~~----~~~~~~~l~~L~~~l~~-~-~~~~-~~---~~~~~~~~~~~~~~~~~~~i~~~~~ 392 (585)
+||||+|+..++ ..... ..|++.+|++|.+.+.. . ...| .. |++.. .... .......++++..+
T Consensus 390 ~~~iI~idid~~~~~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~v 466 (677)
T 1t9b_A 390 RGGIIHFEVSPKNIN-KVVQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKEY-PYAY-MEETPGSKIKPQTV 466 (677)
T ss_dssp SCEEEEEESCGGGSS-SSSCCSEEEESCHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHS-CCCC-CCCCTTCCBCHHHH
T ss_pred CceEEEEECCHHHhC-CcccCCEEEeCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhc-cccc-ccccCCCCcCHHHH
Confidence 999999999886 33222 24899999999887754 1 1122 22 22111 1000 11112356899999
Q ss_pred HHHHHhhC---CCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhccc
Q 044559 393 FQHIQKML---SSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT 468 (585)
Q Consensus 393 ~~~l~~~l---~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~ 468 (585)
++.|.+.+ +++.+++.|+|++..|. .++..+++.+|+.++++|+||+++|+|+|+++|.|+++||+++|||||+|+
T Consensus 467 ~~~L~~~l~~~~~~~iv~~~vg~~~~~~~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~~~ 546 (677)
T 1t9b_A 467 IKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMT 546 (677)
T ss_dssp HHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEEeCCchHHHHHHHhcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHhcc
Confidence 99999998 67788888999887664 456666667799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEEEeCCcceeeeee----cCCCc--CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHh
Q 044559 469 AQDVSTMLRCGQKTIIFLINNGGYTIEVEI----HDGPY--NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIEN 542 (585)
Q Consensus 469 ~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~ 542 (585)
++||+|++++++|++|||+||++|+|.+.+ +.+.+ ..+..+||.++|++||+ ++++|++.+||+++|++
T Consensus 547 ~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~ 621 (677)
T 1t9b_A 547 LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGL-----KGLRVKKQEELDAKLKE 621 (677)
T ss_dssp GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTC-----EEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHcCC-----eEEEECCHHHHHHHHHH
Confidence 999999999999999999999999984322 22322 23467899999999999 99999999999999999
Q ss_pred hcCCCCCCeEEEEEEcCCCCC
Q 044559 543 ATGPKKDCLCFIEVLVHKDDT 563 (585)
Q Consensus 543 a~~~~~~gp~vIeV~v~~~~~ 563 (585)
+++ .++|+||||.+++.+.
T Consensus 622 a~~--~~gp~lIev~~~~~~~ 640 (677)
T 1t9b_A 622 FVS--TKGPVLLEVEVDKKVP 640 (677)
T ss_dssp HHH--CSSCEEEEEEBCSSCC
T ss_pred HHH--CCCcEEEEEEecCCcc
Confidence 986 7899999999998764
No 11
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=1.2e-84 Score=721.59 Aligned_cols=501 Identities=18% Similarity=0.222 Sum_probs=405.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
..|+++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 10 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 89 (590)
T 1ybh_A 10 QPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATN 89 (590)
T ss_dssp CCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHH
Confidence 458999999999999999999999999999999999876789999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++||++|+.+++|||+|||+++....+.+. .|..||.++|+++|||++++++++++++.+++|++.|.++
T Consensus 90 ~~~gv~~A~~~~vPll~itg~~~~~~~g~~~--------~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~ 161 (590)
T 1ybh_A 90 LVSGLADALLDSVPLVAITGQVPRRMIGTDA--------FQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGR 161 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTC--------TTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhCCCEEEEeCcCCccccCCCc--------ccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999998766542 2456899999999999999999999999999999999986
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCc-CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHH
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFS-LSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADA 278 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 278 (585)
+|||||+||.|++..+.+.......... ..+. ..+.++.+.+++++++|.+||||+|++|.|+.+++ +++++|||+
T Consensus 162 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~--~~l~~lae~ 238 (590)
T 1ybh_A 162 PGPVLVDVPKDIQQQLAIPNWEQAMRLPGYMSR-MPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSS--DELGRFVEL 238 (590)
T ss_dssp CCEEEEEEEHHHHHCEECCCTTCCCCCHHHHHH-SCCCCCHHHHHHHHHHHHHCSSEEEEECGGGTTCH--HHHHHHHHH
T ss_pred CceEEEEeCcchhhhhcccccccccccccCCCC-CCCCCCHHHHHHHHHHHHhCCCcEEEECcccccCH--HHHHHHHHH
Confidence 6999999999997532111101000000 0000 00012456799999999999999999999998765 999999999
Q ss_pred hCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceec
Q 044559 279 CGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIA 337 (585)
Q Consensus 279 ~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~ 337 (585)
+|+||++|++|||.||++||+++|.+ |..+... .+..+..+.++.++||||+|+.+++
T Consensus 239 ~~~Pv~~t~~g~g~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 317 (590)
T 1ybh_A 239 TGIPVASTLMGLGSYPADDELSLHML-GMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIG 317 (590)
T ss_dssp HCCCEEECTTTTTSSCTTSTTEEEEC-STTSCHHHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTT
T ss_pred hCCCEEEchhhcCcCCCCCchhcCCc-ccccCHHHHHHHHhCCEEEEEcCCCCccccCcccccCCCCeEEEEECCHHHhC
Confidence 99999999999999999999999986 4333211 1222334556778999999999887
Q ss_pred cCCccc----cccHHHHHHHHHHHhccCc-------chh-hhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 044559 338 NGPAFG----CVLMKDFLKALSKRLKSNT-------TAY-ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETA 405 (585)
Q Consensus 338 ~~~~~~----~~~~~~~l~~L~~~l~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~i 405 (585)
..... ..|++.+|++|.+.+.... ..| ....+.+....... .....++++..+++.|.+.++++++
T Consensus 318 -~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~~lp~~~i 395 (590)
T 1ybh_A 318 -KNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSF-KTFGEAIPPQYAIKVLDELTDGKAI 395 (590)
T ss_dssp -SSSCCSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHHHHHHHHHHHHSCCCC-CCCTTBCCHHHHHHHHHHHTTTCCE
T ss_pred -CCcCCCeEEecCHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhhhhhc-ccccCCcCHHHHHHHHHHhCCCCCE
Confidence 33322 2488999999988765321 112 11111110000000 1123468999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEE
Q 044559 406 VIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTII 484 (585)
Q Consensus 406 iv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~i 484 (585)
++.|+|++..|. .++..+++.+|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++
T Consensus 396 vv~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~i 475 (590)
T 1ybh_A 396 ISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKV 475 (590)
T ss_dssp EEECSSHHHHHHHHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHTTTHHHHHHHTTCCEEE
T ss_pred EEEcCcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCcEE
Confidence 999999987654 4566666677998999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcceeeeee----cCCCc--CCC--------CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCC
Q 044559 485 FLINNGGYTIEVEI----HDGPY--NVI--------KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDC 550 (585)
Q Consensus 485 vV~NN~~~~~~~~~----~~~~~--~~~--------~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~g 550 (585)
||+||++|+|.+.+ +.+.+ ..+ ..+||.++|++||+ ++++|++.+||.++|+++++ .++
T Consensus 476 vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~g 548 (590)
T 1ybh_A 476 LLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGI-----PAARVTKKADLREAIQTMLD--TPG 548 (590)
T ss_dssp EEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTC-----CEEEECBHHHHHHHHHHHHH--SSS
T ss_pred EEEECCcchHHHHHHHHhcCCccccccccccccccCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCC
Confidence 99999999994321 22222 222 25899999999999 89999999999999999986 789
Q ss_pred eEEEEEEcCCCCC
Q 044559 551 LCFIEVLVHKDDT 563 (585)
Q Consensus 551 p~vIeV~v~~~~~ 563 (585)
|+||||.+++.+.
T Consensus 549 p~liev~~~~~~~ 561 (590)
T 1ybh_A 549 PYLLDVICPHQEH 561 (590)
T ss_dssp CEEEEEECCTTCC
T ss_pred CEEEEEEecCCcc
Confidence 9999999998765
No 12
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=2e-84 Score=719.37 Aligned_cols=501 Identities=18% Similarity=0.216 Sum_probs=408.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-PGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
.|+++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N 82 (589)
T 2pgn_A 3 IKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLL 82 (589)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGG
T ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHHH
Confidence 37999999999999999999999999999999999876 679999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++||++|+++++|||+|||+++....+++. . +|..||.. |+++|||++++.+++++++.+++||+.|.++
T Consensus 83 ~~~gv~~A~~~~vPll~itg~~~~~~~~~~~-~------~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 154 (589)
T 2pgn_A 83 LHAAMQEARTGRIPAVHIGLNSDGRLAGRSE-A------AQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHP 154 (589)
T ss_dssp CHHHHHHHHHTTCCEEEEEEESCGGGTTCTT-C------SSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCCCC-c------ccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999998766541 1 23457889 9999999999999999999999999999987
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCC-cCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHH
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPF-SLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADA 278 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 278 (585)
+|||||+||.|++..+.+.....+.+. ..+.... .+. +.+++++++|.+||||+|++|.|+.++++.+++++|||+
T Consensus 155 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~ 231 (589)
T 2pgn_A 155 AGPAYVDIPFDLTADQIDDKALVPRGATRAKSVLH--APN-EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEM 231 (589)
T ss_dssp CCEEEEEEETHHHHCEEECTTTSCCCCCCCCCCCC--CCH-HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHH
T ss_pred CccEEEEeCHhhhhcccccccccccccccCCccCC--ChH-HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHHH
Confidence 699999999998643111100001111 1111001 123 679999999999999999999999888899999999999
Q ss_pred hCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------------ccccccccCCCccEEEEcCCcceec
Q 044559 279 CGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------------FSVGYSLLLKKEKAVILQPDRVVIA 337 (585)
Q Consensus 279 ~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------------~~~~~~~~~~~~~~i~vd~d~~~i~ 337 (585)
+|+||++|++|||.+|++||+++|.. |..+... .+. |..+.++.++||||.|+.+++
T Consensus 232 ~~~Pv~~t~~~~g~~~~~~p~~~G~~-g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~i~id~d~~~~~ 309 (589)
T 2pgn_A 232 VGVPVVTTSTGAGVFPETHALAMGSA-GFCGWKSANDMMAAADFVLVLGSRLSDWGIA-QGYITKMPKFVHVDTDPAVLG 309 (589)
T ss_dssp HTCCEEECTTTTTSSCTTSTTEEEEC-STTSCHHHHHHHHHCSEEEEESCCCCTTTTT-TTTTCCCCSEEEEESCGGGTT
T ss_pred hCCCEEEccccCccCCCCChhhcCCc-cccCCHHHHHHHhhCCEEEEECCCccccccc-ccccCCCCeEEEEeCCHHHHC
Confidence 99999999999999999999999974 4333210 122 444556778999999999887
Q ss_pred cCCccc----cccHHHHHHHHHHHhcc----C------cchhh---hhcc-ccCCCCCCCCCCCCCCcCHHHHHHHHHhh
Q 044559 338 NGPAFG----CVLMKDFLKALSKRLKS----N------TTAYE---NYHR-IYVPEGQPPKCEPKEPLRVNVLFQHIQKM 399 (585)
Q Consensus 338 ~~~~~~----~~~~~~~l~~L~~~l~~----~------~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~l~~~ 399 (585)
..... ..|++.+|++|.+.+.. . ...|. .+.+ .+..... .......++++..+++.|.+.
T Consensus 310 -~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 387 (589)
T 2pgn_A 310 -TFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDGWVRE-QESGDGMPASMFRAMAEVRKV 387 (589)
T ss_dssp -SSSCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHHHHHH-HTCCCCSSCCHHHHHHHHHHT
T ss_pred -CCcCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHHHHhh-hccCCCCCcCHHHHHHHHHHh
Confidence 33322 24889999999887752 1 11222 2222 1100000 000123468999999999999
Q ss_pred CCCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHh
Q 044559 400 LSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRC 478 (585)
Q Consensus 400 l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~ 478 (585)
++++++++.|+|++.+|. .++..+++.+++.++++|+||+++|+|+|+++|.|+++|++++|||+|+|+++||+|++++
T Consensus 388 l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~ 467 (589)
T 2pgn_A 388 QRPEDIIVTDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVEH 467 (589)
T ss_dssp CCTTCEEEECSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHT
T ss_pred CCCCCEEEEcCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHHHHHHHh
Confidence 999999999999987654 4456666677999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeCCcceeeeeec----CCCc-CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEE
Q 044559 479 GQKTIIFLINNGGYTIEVEIH----DGPY-NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCF 553 (585)
Q Consensus 479 ~lpv~ivV~NN~~~~~~~~~~----~~~~-~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~v 553 (585)
++|+++||+||++|+|.+.++ ...| +.+..+||.++|++||+ ++++|++.+||.++|+++++ .++|+|
T Consensus 468 ~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~l 540 (589)
T 2pgn_A 468 KLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGA-----YGESVRETGDIAGALQRAID--SGKPAL 540 (589)
T ss_dssp TCCCEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTC-----EEEECTTTCCHHHHHHHHHH--HCSCEE
T ss_pred CCCeEEEEEECCCcccchHHHHhhcCCCccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEE
Confidence 999999999999999954322 2333 45567999999999999 99999999999999999986 789999
Q ss_pred EEEEcCCCCChH
Q 044559 554 IEVLVHKDDTSK 565 (585)
Q Consensus 554 IeV~v~~~~~~~ 565 (585)
|||.+++.+...
T Consensus 541 iev~~~~~~~~~ 552 (589)
T 2pgn_A 541 IEIPVSKTQGLA 552 (589)
T ss_dssp EEEECCSSSSTT
T ss_pred EEEEecCCCCcC
Confidence 999999877553
No 13
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=9.7e-85 Score=723.87 Aligned_cols=516 Identities=15% Similarity=0.124 Sum_probs=411.0
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 31 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~ 110 (604)
T 2x7j_A 31 THYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFY 110 (604)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTH
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHH
Confidence 5899999999999999999999999999999999876689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhh-------HHHHHHHHHHH
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLED-------AHELIDTAVST 195 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~-------~~~~l~~A~~~ 195 (585)
+||++|+.+++|||+|||+++....+++. .|..||.++|+++|||+++++++++ +++.+++||+.
T Consensus 111 ~gia~A~~~~vPlv~ItG~~~~~~~g~~~--------~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~ 182 (604)
T 2x7j_A 111 PAVVEAHYSRVPIIVLTADRPHELREVGA--------PQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGE 182 (604)
T ss_dssp HHHHHHHHHTCCEEEEEEECCGGGSSSCC--------TTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhCCCC--------CCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999998776652 2456889999999999999999997 99999999999
Q ss_pred hhhc-CCcEEEEecCCCCCCCCCCCCCCC--CCCcCCC-CCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHH
Q 044559 196 ALKE-SKPVYISVACNLPAIPHPTFSREP--VPFSLSP-KLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNA 271 (585)
Q Consensus 196 a~~~-~GPV~i~iP~dv~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~ 271 (585)
|.++ +|||||+||.|++..+.......+ ....... ......++.+.+++++++|.+||||+|++|.|+ ++++.++
T Consensus 183 A~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~-~~~a~~~ 261 (604)
T 2x7j_A 183 AQKRPMGPVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELH-SDADKEN 261 (604)
T ss_dssp HHSSSCCEEEEEEECCSCCCCCTTSCTTCCSSSSCSSEEECCEEECCTGGGHHHHHHHHHCSSEEEEECCCC-CHHHHHH
T ss_pred hhCCCCCcEEEEcccCccCCCcccccccccccccccccccccCccCChhhHHHHHHHHhhcCCeEEEECCCC-cHHHHHH
Confidence 9985 799999999999653211100000 0000000 000111234568899999999999999999998 5678899
Q ss_pred HHHHHHHhCCceEeCCCCcccc-CCCCCCccccccCCCCC---------Cc-cccc-------cccc---CCCccEEEEc
Q 044559 272 FVELADACGYAVAVMPSAKGLV-PEHHPHFIGTYWGAVST---------AF-FSVG-------YSLL---LKKEKAVILQ 330 (585)
Q Consensus 272 l~~lae~~~~Pv~tt~~gkg~~-~~~hp~~~g~~~g~~~~---------~~-~~~~-------~~~~---~~~~~~i~vd 330 (585)
|++|||++++||++|+++++.+ +++||+++|.+.+..+. +. ..+| +..| .++.++||||
T Consensus 262 l~~lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id 341 (604)
T 2x7j_A 262 IIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLRPDVVIRFGPMPVSKPVFLWLKDDPTIQQIVID 341 (604)
T ss_dssp HHHHHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHCCSEEEEESSCCSCHHHHHHHHHCTTSEEEEEC
T ss_pred HHHHHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcCCCEEEEECCcCccHHHHHHHhhCCCCeEEEEC
Confidence 9999999999999999988655 88899998876322221 11 1111 1112 2256899999
Q ss_pred CCcceeccCCccc----cccHHHHHHHHHHHhc-c-Ccc-hhhhhccccC--CCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 044559 331 PDRVVIANGPAFG----CVLMKDFLKALSKRLK-S-NTT-AYENYHRIYV--PEGQPPKCEPKEPLRVNVLFQHIQKMLS 401 (585)
Q Consensus 331 ~d~~~i~~~~~~~----~~~~~~~l~~L~~~l~-~-~~~-~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~~~l~ 401 (585)
+|+.+++ ..... ..|++.+|++|.+.+. . ... +...|.+.+. ..... ......++++..+++.|.+.+|
T Consensus 342 ~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~lp 419 (604)
T 2x7j_A 342 EDGGWRD-PTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQFVNGRFREHLQ-TISSEDVSFEGNLYRILQHLVP 419 (604)
T ss_dssp TTCCCCC-TTSCCSEEECSCHHHHHHHHHHTSCSSCCCCHHHHHHHHHHHHHHHHHH-TSCCCCTTSHHHHHHHHHHHSC
T ss_pred CCCCccC-CCccceEEEEcCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHH-hhcccCCCCHHHHHHHHHHhCC
Confidence 9999887 33222 3489999999998774 2 212 2222211100 00000 0011346899999999999999
Q ss_pred CCCEEEecCCcccccccc-ccccC-CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhC
Q 044559 402 SETAVIAETGDSWFNCQK-LKLPK-GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCG 479 (585)
Q Consensus 402 ~~~iiv~d~G~~~~~~~~-~~~~~-~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~ 479 (585)
++++++.|+|++.+|... +...+ +.+++.++++++||+++|+|+|+++| ++++||+++|||+|+|+++||+|+++++
T Consensus 420 ~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~eL~ta~~~~ 498 (604)
T 2x7j_A 420 ENSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHDLNGLLAAKKLG 498 (604)
T ss_dssp TTCEEEECTTHHHHHHHHHCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH-HTSCEEEEEEHHHHHHTGGGGHHHHHHC
T ss_pred CCCEEEEECCHHHHHHHHhcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc-CCCcEEEEEccHHHHhHHHHHHHhhhcC
Confidence 999999999988776543 33332 56799999999999999999999999 6899999999999999999999999999
Q ss_pred CceEEEEEeCCcceeeeeecCC--------CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCe
Q 044559 480 QKTIIFLINNGGYTIEVEIHDG--------PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCL 551 (585)
Q Consensus 480 lpv~ivV~NN~~~~~~~~~~~~--------~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp 551 (585)
+|+++||+||++|+|.+.+... .+.....+||.++|++||+ ++++|++.+||+++|+++++ .++|
T Consensus 499 lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp 571 (604)
T 2x7j_A 499 IPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDFKHAAALYGG-----TYSCPASWDEFKTAYAPQAD--KPGL 571 (604)
T ss_dssp CCEEEEEEECSSCGGGGGSGGGSCHHHHHHHTTCCCCCCTHHHHHHTTC-----EEECCSSHHHHHHHCCCCCS--SCCE
T ss_pred CCeEEEEEeCCCCcccccCCCCccchhhHhhccCCCCCCHHHHHHHcCC-----eEEecCCHHHHHHHHHHHHh--CCCC
Confidence 9999999999999985432211 1233457899999999999 99999999999999999986 7899
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhhhhc
Q 044559 552 CFIEVLVHKDDTSKELLEWGSRVSAAN 578 (585)
Q Consensus 552 ~vIeV~v~~~~~~~~~~~~~~~~~~~~ 578 (585)
+||||.+++++.++.++++++.++..+
T Consensus 572 ~liev~~~~~~~~~~~~~~~~~~~~~~ 598 (604)
T 2x7j_A 572 HLIEIKTDRQSRVQLHRDMLNEAVREV 598 (604)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCccccHHHHHHHHHHHHHHH
Confidence 999999999999999999998887754
No 14
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=5.7e-83 Score=699.97 Aligned_cols=490 Identities=19% Similarity=0.199 Sum_probs=401.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
+++++++|++.|+++||++|||+||+++++|+++|. ++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 1 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~--~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~ 78 (528)
T 1q6z_A 1 MASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP--EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNA 78 (528)
T ss_dssp -CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC--TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHT
T ss_pred CCcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh--hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHH
Confidence 479999999999999999999999999999999994 479999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCCh-hHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF-SQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~-~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
++||++|+.+++|||+|||+++....+++. + |. .||.++|+++|||+.++++++++++.+++|++.|.++
T Consensus 79 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~-----~---q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~ 150 (528)
T 1q6z_A 79 MGALSNAWNSHSPLIVTAGQQTRAMIGVEA-----L---LTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAP 150 (528)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHTTTC-----T---TCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHhhcCCCEEEEeCCCcccccCCCc-----c---cccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998776652 2 23 4889999999999999999999999999999999986
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 200 SKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
+|||||+||.|++..+.+.. .......... ....++++.+++++++|.++|||+|++|.|+.++++.+++++|+|++
T Consensus 151 ~GPV~l~iP~d~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~ 227 (528)
T 1q6z_A 151 QGPVYLSVPYDDWDKDADPQ-SHHLFDRHVS--SSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERL 227 (528)
T ss_dssp CCCEEEEEEGGGTTSBCCGG-GGGGTTCCCC--CCCCCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred CCcEEEEechhhhhCccccc-cccccccCCC--CCCCCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHH
Confidence 69999999999976421110 0000000000 01123456799999999999999999999998888999999999999
Q ss_pred CCce-EeCCCCccccCCCCCCccccccCCCCCC----------c-----------ccccccc-cCCCccEEEEcCCccee
Q 044559 280 GYAV-AVMPSAKGLVPEHHPHFIGTYWGAVSTA----------F-----------FSVGYSL-LLKKEKAVILQPDRVVI 336 (585)
Q Consensus 280 ~~Pv-~tt~~gkg~~~~~hp~~~g~~~g~~~~~----------~-----------~~~~~~~-~~~~~~~i~vd~d~~~i 336 (585)
++|| +++.+|||.||++||+++|.+. .+.. . .+..|.. +.++.++||||.|+.++
T Consensus 228 ~~Pv~~~~~~g~g~~~~~~p~~~G~~g--~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 305 (528)
T 1q6z_A 228 KAPVWVAPSAPRCPFPTRHPCFRGLMP--AGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEA 305 (528)
T ss_dssp TCCEEECSSCSBCCSCTTSTTEEEECC--SCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHH
T ss_pred CCCEEEeccCccccCCCCCccccCcCC--CCcHHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHh
Confidence 9999 7788999999999999999873 2211 0 1223333 23467899999999888
Q ss_pred ccCCccc----cccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCc
Q 044559 337 ANGPAFG----CVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGD 412 (585)
Q Consensus 337 ~~~~~~~----~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~G~ 412 (585)
+ .. .. ..|++.+|++|.+.+.....++..|++.. .. ......++++..+++.|.+.+|++++++.|+|+
T Consensus 306 ~-~~-~~~~~i~~d~~~~l~~L~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~ 378 (528)
T 1q6z_A 306 A-RA-PMGDAIVADIGAMASALANLVEESSRQLPTAAPEP----AK-VDQDAGRLHPETVFDTLNDMAPENAIYLNESTS 378 (528)
T ss_dssp H-HC-SSSEEEESCHHHHHHHHHHHSCCCCSCCCCCCCCC----CC-CCCCSSSBCHHHHHHHHHHHSCTTCEEEEECTT
T ss_pred C-CC-CCCeeEeCCHHHHHHHHHHHhhccccchHHHHhhh----hc-ccccCCCcCHHHHHHHHHhhCCCCeEEEECCcc
Confidence 6 33 22 24899999999987754322211222110 00 111234689999999999999999999999999
Q ss_pred cccccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCc
Q 044559 413 SWFNCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGG 491 (585)
Q Consensus 413 ~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~ 491 (585)
+..|.. ++...++.+++.+.+ |+||+++|+|+|+++|.|+++|++++|||+|+|+++||+|++++++|+++||+||++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~~a~~~~l~~~ivv~nN~~ 457 (528)
T 1q6z_A 379 TTAQMWQRLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGT 457 (528)
T ss_dssp SHHHHHHHCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEEEEECSB
T ss_pred cHHHHHHhccccCCCcEECCCC-ccccchHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHHHHHHhCCCeEEEEEeCCc
Confidence 987753 355555566898888 999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeee----cCC--CcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCC
Q 044559 492 YTIEVEI----HDG--PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDD 562 (585)
Q Consensus 492 ~~~~~~~----~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
|++.+.. +.. .++++..+||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++++
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp~liev~~~~~~ 527 (528)
T 1q6z_A 458 YGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGV-----QALKADNLEQLKGSLQEALS--AKGPVLIEVSTVSPV 527 (528)
T ss_dssp CHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTC-----EEEEESSHHHHHHHHHHHHT--CSSCEEEEEEBCC--
T ss_pred chHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHH--CCCcEEEEEEecCCC
Confidence 9994332 122 2345578999999999999 99999999999999999986 789999999999865
No 15
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=6.8e-84 Score=712.26 Aligned_cols=501 Identities=20% Similarity=0.234 Sum_probs=407.1
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 122 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~ 122 (585)
|+++++|++.|+++||++|||+||+++++|+++|.++ +|++|.++||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 4 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~ 82 (563)
T 2uz1_A 4 ITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDH-DVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAV 82 (563)
T ss_dssp EEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHH-TCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTH
T ss_pred cCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhc-CCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHHH
Confidence 7999999999999999999999999999999999865 59999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCCh-hHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 123 NAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF-SQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 123 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~-~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
+||++|+.+++|||+|||+++....+++. .|. .||.++|+++|||++++++++++++.+++|++.|.++ +
T Consensus 83 ~~l~~A~~~~~Pll~itg~~~~~~~~~~~--------~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~ 154 (563)
T 2uz1_A 83 TPIANAWLDRTPVLFLTGSGALRDDETNT--------LQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPR 154 (563)
T ss_dssp HHHHHHHHHTCCEEEEEEECCGGGTTSCC--------TTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHhcCCCEEEEeCCCCcccCCchh--------hhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998776642 234 6899999999999999999999999999999999986 6
Q ss_pred CcEEEEecCCCCCCC-CCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 201 KPVYISVACNLPAIP-HPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 201 GPV~i~iP~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
|||||+||.|+...+ .+... ..+. ..+......++.+.+++++++|.++|||+|++|.|+.++++.++|++|||++
T Consensus 155 GPV~l~iP~dv~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~ 231 (563)
T 2uz1_A 155 GPVLLDLPWDILMNQIDEDSV--IIPD-LVLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAAT 231 (563)
T ss_dssp CCEEEEEEHHHHHCEEEGGGS--CCCC-CCCCSSCCBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHH
T ss_pred ceEEEEeCHHHhhhhcccccc--cccc-cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHHh
Confidence 999999999953211 01100 0010 0000001123456799999999999999999999999888999999999999
Q ss_pred CCceEeCCCCccccCCC-CCCcccccc-CCC-----C-CCc-----------ccccccccCC-CccEEEEcCCcceeccC
Q 044559 280 GYAVAVMPSAKGLVPEH-HPHFIGTYW-GAV-----S-TAF-----------FSVGYSLLLK-KEKAVILQPDRVVIANG 339 (585)
Q Consensus 280 ~~Pv~tt~~gkg~~~~~-hp~~~g~~~-g~~-----~-~~~-----------~~~~~~~~~~-~~~~i~vd~d~~~i~~~ 339 (585)
++||++|++|||.||++ ||+++|.+. +.. . .+. .+..|..+.+ +.++||||.|+.+++ .
T Consensus 232 ~~Pv~~t~~~~g~~~~~~~p~~~G~~g~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~ 310 (563)
T 2uz1_A 232 GVPVFADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELG-R 310 (563)
T ss_dssp CCCEEECGGGGGGGTTSCGGGEEEEGGGGGGTTTTTCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGGTT-S
T ss_pred CCcEEEcCcccCcCCCCCChhhcCCCCCCCHHHHhhcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCHHHhC-C
Confidence 99999999999999999 999998763 000 0 010 1223444555 678999999999887 3
Q ss_pred Cccc----cccHHHHHHHHHHHhccC----c-chh----hh-hccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 044559 340 PAFG----CVLMKDFLKALSKRLKSN----T-TAY----EN-YHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETA 405 (585)
Q Consensus 340 ~~~~----~~~~~~~l~~L~~~l~~~----~-~~~----~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~i 405 (585)
.... ..|++.+|++|.+.+... . ..| .. +++........ ..... ++++..+++.|.+.++++++
T Consensus 311 ~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~l~~~~i 388 (563)
T 2uz1_A 311 LQGIALGIVADVGGTIEALAQATAQDAAWPDRGDWCAKVTDLAQERYASIAAK-SSSEH-ALHPFHASQVIAKHVDAGVT 388 (563)
T ss_dssp SSCCSEEECSCHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCSS-SCCHHHHHHHHHTTCSTTEE
T ss_pred CCCCCeEEEcCHHHHHHHHHHhhhhcccccCcHHHHHHHHHHHHHHhHhhhhc-cccCC-CcCHHHHHHHHHHhCCCCcE
Confidence 3322 348999999998877541 1 112 11 21110000000 00112 68999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcC--CCCcEEEEEccchhcccHHHHHHHHHhCCce
Q 044559 406 VIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSV--PEKRVIACIGDGSFQVTAQDVSTMLRCGQKT 482 (585)
Q Consensus 406 iv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~--p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv 482 (585)
++.|+|++..|. .++..+++.+++.++++|+||+++|+|+|+++|. |+++|++++|||+|+|+++||+|++++++|+
T Consensus 389 v~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~ 468 (563)
T 2uz1_A 389 VVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPL 468 (563)
T ss_dssp EEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHHHHHHHTCCC
T ss_pred EEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHHHHHHhCCCe
Confidence 999999987654 4456666677999999999999999999999998 8999999999999999999999999999999
Q ss_pred EEEEEeCCcceeeeee----cCC-C--cCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEE
Q 044559 483 IIFLINNGGYTIEVEI----HDG-P--YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIE 555 (585)
Q Consensus 483 ~ivV~NN~~~~~~~~~----~~~-~--~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIe 555 (585)
++||+||++|+|.+.. ++. . ++++..+||.++|++||+ ++++|++.+||.++|+++++ .++|+|||
T Consensus 469 ~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp~lie 541 (563)
T 2uz1_A 469 IVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGA-----DGYHVDSVESFSAALAQALA--HNRPACIN 541 (563)
T ss_dssp EEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTC-----EEEEECSHHHHHHHHHHHHH--SSSCEEEE
T ss_pred EEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHH--CCCCEEEE
Confidence 9999999999994322 122 2 244567999999999999 99999999999999999986 78999999
Q ss_pred EEcCCCCChHH
Q 044559 556 VLVHKDDTSKE 566 (585)
Q Consensus 556 V~v~~~~~~~~ 566 (585)
|.+++++.++.
T Consensus 542 v~~~~~~~~p~ 552 (563)
T 2uz1_A 542 VAVALDPIPPE 552 (563)
T ss_dssp EECCSCCCCHH
T ss_pred EEeccccCCch
Confidence 99998777653
No 16
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=6.8e-83 Score=706.71 Aligned_cols=494 Identities=16% Similarity=0.204 Sum_probs=404.3
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-PGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
|+++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 4 ~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~ 83 (590)
T 1v5e_A 4 INIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHL 83 (590)
T ss_dssp EEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTT
T ss_pred ccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHH
Confidence 7999999999999999999999999999999999875 579999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++|+.+++|||+|||+++....+++ .+ |..||.++|+++|||++++++++++++.+++||+.|.++ +
T Consensus 84 ~~gl~~A~~~~vPll~Itg~~p~~~~g~~-----~~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 155 (590)
T 1v5e_A 84 INGLYDAAMDNIPVVAILGSRPQRELNMD-----AF---QELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRG 155 (590)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTTT-----CT---TCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcccCCCC-----cc---cccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999876654 12 345889999999999999999999999999999999997 5
Q ss_pred CcEEEEecCCCCCCCCCCCCC--C--CCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHH
Q 044559 201 KPVYISVACNLPAIPHPTFSR--E--PVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELA 276 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~la 276 (585)
||||| ||.|++..+.+.... . ..+. ..+. .++.+.+++++++|.++|||+|++|.|+ + ++.+++.+||
T Consensus 156 GPV~l-iP~dv~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~i~~~~~~l~~a~rpvil~G~g~-~-~a~~~l~~la 227 (590)
T 1v5e_A 156 VAVLE-VPGDFAKVEIDNDQWYSSANSLRK-YAPI----APAAQDIDAAVELLNNSKRPVIYAGIGT-M-GHGPAVQELA 227 (590)
T ss_dssp EEEEE-EETTGGGCEEEGGGCCCCGGGCCC-CCCC----CCCHHHHHHHHHHHHHCSSEEEEECGGG-T-TCHHHHHHHH
T ss_pred ceEEE-EccchhhcccCccccccccccccc-CCCC----CCCHHHHHHHHHHHHhCCCeEEEEcCch-h-HHHHHHHHHH
Confidence 99999 999997632110000 0 0110 0111 1234679999999999999999999999 7 8999999999
Q ss_pred HHhCCceEeCCCCccccCCCCCCccccccCCCCCCc---------------ccccccc----cCCCccEEEEcCCcceec
Q 044559 277 DACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------------FSVGYSL----LLKKEKAVILQPDRVVIA 337 (585)
Q Consensus 277 e~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~~---------------~~~~~~~----~~~~~~~i~vd~d~~~i~ 337 (585)
|++++||++|++|||.||++||+++|.. |..+... ....+.. +.++.++||||+|+.+++
T Consensus 228 e~~~~Pv~~t~~g~g~~~~~~p~~~G~~-g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 306 (590)
T 1v5e_A 228 RKIKAPVITTGKNFETFEWDFEALTGST-YRVGWKPANETILEADTVLFAGSNFPFSEVEGTFRNVDNFIQIDIDPAMLG 306 (590)
T ss_dssp HHHTCCEEECTTCGGGSCTTCTTEEEES-SSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTTTTTCSEEEEEESCGGGTT
T ss_pred HHHCCCEEEccccCcCCCCCChhhCccC-cccCCHHHHHHHHhCCEEEEECCCCcchhccccCCCCCeEEEEeCCHHHHC
Confidence 9999999999999999999999999985 4443221 1111111 125678999999999887
Q ss_pred cCCccc----cccHHHHHHHHHHHhccCc-chh-hhhccccCCCCCCCCC---CCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 044559 338 NGPAFG----CVLMKDFLKALSKRLKSNT-TAY-ENYHRIYVPEGQPPKC---EPKEPLRVNVLFQHIQKMLSSETAVIA 408 (585)
Q Consensus 338 ~~~~~~----~~~~~~~l~~L~~~l~~~~-~~~-~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~l~~~l~~~~iiv~ 408 (585)
+.... ..|++.+|++|.+.+.... ..| ..+.+.+......... ....++++..+++.|.+.++++++++.
T Consensus 307 -~~~~~~~~i~gd~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~ 385 (590)
T 1v5e_A 307 -KRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWREYINMLETKEEGDLQFYQVYNAINNHADEDAIYSI 385 (590)
T ss_dssp -SSSCCSEEEESCHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHSCTTCEEEE
T ss_pred -CCcCCCeEEEcCHHHHHHHHHHhhccCCcHHHHHHHHHHHHHhHhhhhhcccCCCCCcCHHHHHHHHHhhCCCCCEEEE
Confidence 33322 2478999999998775422 112 1111110000000000 123458999999999999999999999
Q ss_pred cCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEE
Q 044559 409 ETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLI 487 (585)
Q Consensus 409 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~ 487 (585)
|+|++.+|. .++..+++.+++.++++|+||+++|+|+|+++|.|+++|++++|||+|+|+++||+|++++++|+++||+
T Consensus 386 d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~ 465 (590)
T 1v5e_A 386 DVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVF 465 (590)
T ss_dssp CSSHHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEE
T ss_pred CCchHHHHHHHhcccCCCCeEEcCCCCCcccChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHHHHHHhCCCCEEEEE
Confidence 999998774 5566777778999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcceeeeeecCCC-c----CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCC---CCeEEEEEEcC
Q 044559 488 NNGGYTIEVEIHDGP-Y----NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKK---DCLCFIEVLVH 559 (585)
Q Consensus 488 NN~~~~~~~~~~~~~-~----~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~---~gp~vIeV~v~ 559 (585)
||++|+|.+..+... | .++.++||.++|++||+ ++++|++.+||.++|+++++ . ++|+||||.++
T Consensus 466 NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~~~gp~liev~~~ 538 (590)
T 1v5e_A 466 SNTEYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGA-----KGFTVSRIEDMDRVMAEAVA--ANKAGHTVVIDCKIT 538 (590)
T ss_dssp ECSSCTTGGGTTSSSCCSCCCCCCCCCCHHHHHHHTTS-----EEEEECBHHHHHHHHHHHHH--HHHTTCCEEEEEECC
T ss_pred ECCchHHHHHHHHHhcCCCccccCCCCCHHHHHHHcCC-----EEEEECCHHHHHHHHHHHHH--hcCCCCCEEEEEEec
Confidence 999999954332211 2 22567999999999999 99999999999999999986 5 89999999999
Q ss_pred CCC
Q 044559 560 KDD 562 (585)
Q Consensus 560 ~~~ 562 (585)
+++
T Consensus 539 ~~~ 541 (590)
T 1v5e_A 539 QDR 541 (590)
T ss_dssp SCC
T ss_pred ccc
Confidence 988
No 17
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=2.5e-83 Score=708.96 Aligned_cols=507 Identities=16% Similarity=0.138 Sum_probs=377.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||+ |||++|+|||++|+
T Consensus 10 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~ 89 (578)
T 3lq1_A 10 LTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANY 89 (578)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhh
Confidence 46899999999999999999999999999999999877789999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHH-------HHHHHHH
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHE-------LIDTAVS 194 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~-------~l~~A~~ 194 (585)
++||++||.+++|||+|||+++....+++. .|..||.++|+++|||++++++++++++ .+++||+
T Consensus 90 ~~gia~A~~d~vPll~itG~~p~~~~g~~~--------~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~ 161 (578)
T 3lq1_A 90 FPAVAEANLSQIPLIVLTADRPHELRNVGA--------PQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVD 161 (578)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTSSC--------TTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCeEEEeCCCCHHhhcCCC--------CCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999998766542 2455889999999999999999988664 8999999
Q ss_pred Hhhhc-CCcEEEEecCCCCCCCCCCCCCCC---CCC--cCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccch
Q 044559 195 TALKE-SKPVYISVACNLPAIPHPTFSREP---VPF--SLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKA 268 (585)
Q Consensus 195 ~a~~~-~GPV~i~iP~dv~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a 268 (585)
.|.++ +|||||+||.|++..+ ....... .+. ..........++++.+++++++|.+ |||+|++|+|+.+ ++
T Consensus 162 ~A~~gr~GPV~l~iP~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~-~~ 238 (578)
T 3lq1_A 162 IAMKTPRGPVHLNFPLREPLVP-ILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKK-EL 238 (578)
T ss_dssp HHHSSSCCCEEEEEECCSCCCC-CCSSCCC------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCT-TC
T ss_pred HhhCCCCCcEEEECccCCCCCC-CcccchhcccCccccccccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCCh-HH
Confidence 99986 7999999999986531 1111000 000 0000001113456779999999999 9999999999976 56
Q ss_pred HHHHHHHHHHhCCceEeCCC-CccccCCCCCCccccccCCCCC---------Cc-cccc-------cccc---CCCccEE
Q 044559 269 CNAFVELADACGYAVAVMPS-AKGLVPEHHPHFIGTYWGAVST---------AF-FSVG-------YSLL---LKKEKAV 327 (585)
Q Consensus 269 ~~~l~~lae~~~~Pv~tt~~-gkg~~~~~hp~~~g~~~g~~~~---------~~-~~~~-------~~~~---~~~~~~i 327 (585)
.++|++|||++++||++|++ +++.+|++||+++|.+.+..+. +. ..+| +..| .++.++|
T Consensus 239 ~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~~~~~~~~~~~~~~~~~~~i 318 (578)
T 3lq1_A 239 EQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFY 318 (578)
T ss_dssp HHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCCSEEEEESSCCSCHHHHHHHHHCCSSEEE
T ss_pred HHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCCCEEEEeCCcccchhHHHHHhcCCCCEEE
Confidence 79999999999999999965 5899999999999976322111 11 1111 1112 2567899
Q ss_pred EEcCCcceeccCCccc----cccHHHHHHHHHHHhccCc--c-hhhhhccccC--CC-CCCCCCCCCCCcCHHHHHHHHH
Q 044559 328 ILQPDRVVIANGPAFG----CVLMKDFLKALSKRLKSNT--T-AYENYHRIYV--PE-GQPPKCEPKEPLRVNVLFQHIQ 397 (585)
Q Consensus 328 ~vd~d~~~i~~~~~~~----~~~~~~~l~~L~~~l~~~~--~-~~~~~~~~~~--~~-~~~~~~~~~~~i~~~~~~~~l~ 397 (585)
|||+|+..++ ..... ..|++.+|++|.+.+.... . |...|.+.+. .. ... ......++++.++++.|.
T Consensus 319 ~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 396 (578)
T 3lq1_A 319 VVDPGAAWKD-PIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVLA-EMANTTILEEGKIVAELR 396 (578)
T ss_dssp EECTTCCCCC-TTCCCSEEECSCHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHHHHHHHHH-HSCC----CTTHHHHHHH
T ss_pred EECCCCCcCC-CCcCceEEEEeCHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHhHHHHH-hhhcCCCCCHHHHHHHHH
Confidence 9999998886 33322 2489999999998775432 1 2222221100 00 000 011235689999999999
Q ss_pred hhCCCCCEEEecCCcccccccc-cc-ccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHH
Q 044559 398 KMLSSETAVIAETGDSWFNCQK-LK-LPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTM 475 (585)
Q Consensus 398 ~~l~~~~iiv~d~G~~~~~~~~-~~-~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta 475 (585)
+.+|++++++.|.|++.++... +. .+++.+++.+.|+++||+++|+|+|+++ ++++||+++|||||+|+++||+|+
T Consensus 397 ~~l~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~--~~~~vv~i~GDGsf~~~~~eL~ta 474 (578)
T 3lq1_A 397 RLLPDKAGLFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASV--VFQPMFLLIGDLSFYHDMNGLLMA 474 (578)
T ss_dssp HHSCSEEEEEECSSHHHHHHHHHCCCCSSEEEEECCCSSCCSSSHHHHHHHHTT--TSSSEEEEEEHHHHHHTGGGGHHH
T ss_pred HhCCCCCeEEEeCccHHHHHHHhhcccCCCceEEeCCCccccccHHHHHHHHhc--CCCCEEEEEchHHHHhhHHHHHhh
Confidence 9999999999998877665433 22 3445567778888888889999999985 689999999999999999999999
Q ss_pred HHhCCceEEEEEeCCcceeeeee---c-CCC----cCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCC
Q 044559 476 LRCGQKTIIFLINNGGYTIEVEI---H-DGP----YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPK 547 (585)
Q Consensus 476 ~~~~lpv~ivV~NN~~~~~~~~~---~-~~~----~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~ 547 (585)
+++++|+++||+||++|+|.+.+ . ... +....++||.++|++||+ ++++|++.+||+++|+++++
T Consensus 475 ~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~-- 547 (578)
T 3lq1_A 475 KKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDFRFAAAFYDA-----DYHEAKSVDELEEAIDKASY-- 547 (578)
T ss_dssp HHTTCCEEEEEECCC-------------------------CCCTHHHHHHTTC-----EEEECCSHHHHHHHHHHHTT--
T ss_pred ccCCCCeEEEEEECCcCccccccccccccchhhhhccCCCCCCHHHHHHHcCC-----ceEecCCHHHHHHHHHHHHh--
Confidence 99999999999999999995532 1 111 222357899999999999 99999999999999999986
Q ss_pred CCCeEEEEEEcCCCCChHHHHHHH
Q 044559 548 KDCLCFIEVLVHKDDTSKELLEWG 571 (585)
Q Consensus 548 ~~gp~vIeV~v~~~~~~~~~~~~~ 571 (585)
.+||+||||.+++++....++.+.
T Consensus 548 ~~gp~liev~~~~~~~~~~~~~~~ 571 (578)
T 3lq1_A 548 HKGLDIIEVKTNRHENKANHQALE 571 (578)
T ss_dssp SSSEEEEEEC--------------
T ss_pred CCCCEEEEEECCccccHHHHHhhh
Confidence 899999999999999877766553
No 18
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=1.4e-82 Score=702.85 Aligned_cols=498 Identities=21% Similarity=0.258 Sum_probs=402.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCC-hHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDF-NLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~-~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
.|+++++|++.|+++||++|||+||++ +++|+++|. + |++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~--~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 87 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE--G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTN 87 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST--T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc--C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHH
Confidence 489999999999999999999999999 999999997 4 9999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCC-ccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGT-NRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~-~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~ 199 (585)
+++||++|+++++|||+|||+++....++ + . +|..||.++|+++|||++++++++++++.+++|++.|.++
T Consensus 88 ~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~-----~---~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 159 (573)
T 2iht_A 88 LSTGIATSVLDRSPVIALAAQSESHDIFPND-----T---HQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTE 159 (573)
T ss_dssp HHHHHHHHHHHTCCEEEEEEESCGGGCCTTT-----S---TTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBS
T ss_pred HHHHHHHHHhhCCCEEEEcccCcccccCCcC-----c---cccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999987765 3 1 2456899999999999999999999999999999999987
Q ss_pred -CCcEEEEecCCCCCCCCC----CCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHH
Q 044559 200 -SKPVYISVACNLPAIPHP----TFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVE 274 (585)
Q Consensus 200 -~GPV~i~iP~dv~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~ 274 (585)
+|||||+||.|++..+.. .......+. ..+......++.+.+++++++|.+||||+|++|.|+.++++.++|++
T Consensus 160 ~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~ 238 (573)
T 2iht_A 160 PVGPSFISLPVDLLGSSEGIDTTVPNPPANTP-AKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRA 238 (573)
T ss_dssp SCCCEEEEEEHHHHTCCTTCC---CCCCCCCC-SSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHH
T ss_pred CCceEEEEecchHhhhhhcccccCCccccccC-CCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHH
Confidence 599999999999754200 110000000 01100000245677999999999999999999999988889999999
Q ss_pred HHHHhCCceEeCCCCccccCCCCCCccccc----cCCCCCC----------c-----cc-c-ccc--ccC--CCccEEEE
Q 044559 275 LADACGYAVAVMPSAKGLVPEHHPHFIGTY----WGAVSTA----------F-----FS-V-GYS--LLL--KKEKAVIL 329 (585)
Q Consensus 275 lae~~~~Pv~tt~~gkg~~~~~hp~~~g~~----~g~~~~~----------~-----~~-~-~~~--~~~--~~~~~i~v 329 (585)
|||++|+||++|++|||.||++||+++|.+ .|..+.. . .. + .+. .+. ++.++|||
T Consensus 239 lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i 318 (573)
T 2iht_A 239 LAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRI 318 (573)
T ss_dssp HHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHCCSSCCEEEEE
T ss_pred HHHHHCCeEEEecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccCCCCCCeEEEE
Confidence 999999999999999999999999999875 1211111 1 11 1 111 121 46789999
Q ss_pred cCCcceeccCCccc----cccHHHHHHHHHHHhccC-cchhhhhccccC--CCCCCCCCCCCCCcCHHHHHHHHHhhCCC
Q 044559 330 QPDRVVIANGPAFG----CVLMKDFLKALSKRLKSN-TTAYENYHRIYV--PEGQPPKCEPKEPLRVNVLFQHIQKMLSS 402 (585)
Q Consensus 330 d~d~~~i~~~~~~~----~~~~~~~l~~L~~~l~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~~~l~~ 402 (585)
|.|+.+++ ..... ..|++.+|++|.+.+... ...|..+.+.+. ............++++..+++.|.+.+++
T Consensus 319 d~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 397 (573)
T 2iht_A 319 SPTVNPIP-RVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVMEE 397 (573)
T ss_dssp ESSCCSCT-TTCCCSEEEESCHHHHHHHHHHHTTTCCCCCCCCCHHHHHHHHHHHTCCCCCSSSBCHHHHHHHHHHHHHH
T ss_pred eCCHHHhC-CCcCCCeeEeCCHHHHHHHHHHhccccCchhHHHHHHHHHHhhhhhhccccCcCCcCHHHHHHHHHHhccc
Confidence 99999887 33322 248899999998877542 112221111100 00000011223469999999999999998
Q ss_pred -----CCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHH
Q 044559 403 -----ETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTML 476 (585)
Q Consensus 403 -----~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~ 476 (585)
+++++.|+|++..|. .++..+++.+++.++++|+||+++|+|+|+++|.|+++|++++|||+|+|+++||+|++
T Consensus 398 ~~~~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~~~~~~~L~~a~ 477 (573)
T 2iht_A 398 AAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIA 477 (573)
T ss_dssp HSCTTCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHH
T ss_pred ccCCCCcEEEEcCcHhHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHHHhHHHHHHHHH
Confidence 999999999998764 34556666679999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEEEEeCCcceeeeee----cCC-Cc--CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCC
Q 044559 477 RCGQKTIIFLINNGGYTIEVEI----HDG-PY--NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKD 549 (585)
Q Consensus 477 ~~~lpv~ivV~NN~~~~~~~~~----~~~-~~--~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~ 549 (585)
++++|+++||+||++|+|.+.+ +.. .. ..+..+||.++|++||+ ++++|++.+||.++|+++++ .+
T Consensus 478 ~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~ 550 (573)
T 2iht_A 478 RLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGV-----DATRATNREELLAALRKGAE--LG 550 (573)
T ss_dssp HHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTTC-----EEEECCSHHHHHHHHHHHHT--SS
T ss_pred HhCCCeEEEEEECCcchhhHHHHHHhcCCCcCccccCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CC
Confidence 9999999999999999994432 122 22 44567899999999999 99999999999999999986 78
Q ss_pred CeEEEEEEcCC
Q 044559 550 CLCFIEVLVHK 560 (585)
Q Consensus 550 gp~vIeV~v~~ 560 (585)
+|+||||.+++
T Consensus 551 gp~liev~~~~ 561 (573)
T 2iht_A 551 RPFLIEVPVNY 561 (573)
T ss_dssp SCEEEEEEBCC
T ss_pred CCEEEEEECCC
Confidence 99999999998
No 19
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=7.5e-82 Score=702.72 Aligned_cols=501 Identities=18% Similarity=0.210 Sum_probs=402.4
Q ss_pred CcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhc-Cc-cEEEEeCChhhHHH
Q 044559 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLSV 121 (585)
Q Consensus 44 ~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~t-g~-~v~~~tsGpG~~n~ 121 (585)
|+++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+| |+ +||++|+|||++|+
T Consensus 27 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~ 106 (616)
T 2pan_A 27 MRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDM 106 (616)
T ss_dssp EEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTS
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHH
Confidence 69999999999999999999999999999999998766899999999999999999999999 78 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++|+++++|||+|||+++....+.+ ..|..||.++|+++|||++++.+++++++++++|++.|.++ +
T Consensus 107 ~~~l~~A~~~~vPlvvItg~~p~~~~~~~--------~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~ 178 (616)
T 2pan_A 107 ITALYSASADSIPILCITGQAPRARLHKE--------DFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRP 178 (616)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTT--------CTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhcCCCEEEEecCCcccccCcc--------cccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999865543 12456899999999999999999999999999999999986 7
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhC
Q 044559 201 KPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~ 280 (585)
|||||+||.|++..+.+........ .+...+ ....+.+++++++|.++|||+|++|.|+.++++.+++++|||+++
T Consensus 179 GPV~l~iP~d~~~~~~~~~~~~~~~--~~~~~~--~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 254 (616)
T 2pan_A 179 GPVLVDLPFDVQVAEIEFDPDMYEP--LPVYKP--AASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTS 254 (616)
T ss_dssp CCEEEEEEHHHHHSEEECCGGGCCC--CCCCCC--CCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHT
T ss_pred ceEEEEcchhhhhcccccccccccc--cccCCC--CCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhC
Confidence 9999999999965311111000000 010001 112567999999999999999999999988889999999999999
Q ss_pred CceEeCCCCccccCCCCCCccccccCCCCCC-c-----------c----------cccccccCCCccEEEEcCCcceecc
Q 044559 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTA-F-----------F----------SVGYSLLLKKEKAVILQPDRVVIAN 338 (585)
Q Consensus 281 ~Pv~tt~~gkg~~~~~hp~~~g~~~g~~~~~-~-----------~----------~~~~~~~~~~~~~i~vd~d~~~i~~ 338 (585)
+||++|+++||.||++||+++|.+. ..+.. . . +..+..+.++.++||||+|+.+++
T Consensus 255 ~PV~~t~~~~g~~~~~hp~~~G~~g-~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 332 (616)
T 2pan_A 255 VPVIPTLMGWGCIPDDHELMAGMVG-LQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIG- 332 (616)
T ss_dssp CCEEECTTTTTSSCTTSTTBCCCCS-SSSCCHHHHHHHHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTT-
T ss_pred CCEEEccccCccCCCCCccccCCcc-ccCCHHHHHHHHHhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhC-
Confidence 9999999999999999999999873 32222 1 1 111223445678999999999887
Q ss_pred CCccc----cccHHHHHHHHHHHhcc------C--cchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 044559 339 GPAFG----CVLMKDFLKALSKRLKS------N--TTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAV 406 (585)
Q Consensus 339 ~~~~~----~~~~~~~l~~L~~~l~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii 406 (585)
+.... ..|++.+|++|.+.+.. . ..+|....+.+.............++++..+++.|.+.+++++++
T Consensus 333 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~iv 412 (616)
T 2pan_A 333 RVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCY 412 (616)
T ss_dssp SSSCCSSCEECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSEECCCCCCSSBCHHHHHHHHHHHSCTTEEE
T ss_pred CCCCCCeEEEcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhhhccccCCCCcCHHHHHHHHHHhCCCCcEE
Confidence 33322 24789999999876532 1 112222111110100000111234699999999999999999999
Q ss_pred EecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEE
Q 044559 407 IAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIF 485 (585)
Q Consensus 407 v~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~iv 485 (585)
+.|+|++..|. .++..+++.+|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++|
T Consensus 413 v~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~iv 492 (616)
T 2pan_A 413 VTTIGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHV 492 (616)
T ss_dssp EECSSHHHHHHHHHCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHHHHHHTTCCCEEE
T ss_pred EEcCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHHHHHHhCCCeEEE
Confidence 99999987664 44555666679999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcceeeeee----cCC-----CcCC--C-----CCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CC
Q 044559 486 LINNGGYTIEVEI----HDG-----PYNV--I-----KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PK 547 (585)
Q Consensus 486 V~NN~~~~~~~~~----~~~-----~~~~--~-----~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~ 547 (585)
|+||++|+|.+.+ +.. .+.. + +.+||.++|++||+ ++++|++.+||.++|+++++ .+
T Consensus 493 v~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~~~~~ 567 (616)
T 2pan_A 493 LVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGC-----KAIRVFKPEDIAPAFEQAKALMAQ 567 (616)
T ss_dssp EEECSBCHHHHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTC-----EEEEECSGGGHHHHHHHHHHHHHH
T ss_pred EEECCcchHHHHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCC-----eEEEECCHHHHHHHHHHHHhhccc
Confidence 9999999984321 121 2322 1 24899999999999 99999999999999999872 01
Q ss_pred CCCeEEEEEEcCCCCC
Q 044559 548 KDCLCFIEVLVHKDDT 563 (585)
Q Consensus 548 ~~gp~vIeV~v~~~~~ 563 (585)
.++|+||||.+++.+.
T Consensus 568 ~~gp~lIev~~~~~~~ 583 (616)
T 2pan_A 568 YRVPVVVEVILERVTN 583 (616)
T ss_dssp HCSCEEEEEEBCSCCC
T ss_pred CCCcEEEEEEeccccc
Confidence 4799999999998774
No 20
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=4.5e-83 Score=706.43 Aligned_cols=517 Identities=18% Similarity=0.193 Sum_probs=399.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHH
Q 044559 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 120 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n 120 (585)
..|+++++|++.|+++||++|||+||+++++|+++|.+. +|++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 8 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N 86 (568)
T 2c31_A 8 ELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDD-GQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLN 86 (568)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHT-TCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhC-CCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 348999999999999999999999999999999999764 79999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-
Q 044559 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE- 199 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 199 (585)
+++||++|+.+++|||+|||+++....+.+ .+..|..||.++|+++|||++++++++++++.+++|++.|.++
T Consensus 87 ~~~~i~~A~~~~vPll~itg~~~~~~~~~~------~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 160 (568)
T 2c31_A 87 GVTSLAHATTNCFPMILLSGSSEREIVDLQ------QGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGR 160 (568)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTT------CCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhcCCCEEEEccCCCccccCCC------CCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998865521 1123456899999999999999999999999999999999985
Q ss_pred CCcEEEEecCCCCCCCCCCCC--CCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHH
Q 044559 200 SKPVYISVACNLPAIPHPTFS--REPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELAD 277 (585)
Q Consensus 200 ~GPV~i~iP~dv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae 277 (585)
+|||||+||.|++..+.+... ....+....+. ...++.+.+++++++|.+||||+|++|.|+.++++.++|++|||
T Consensus 161 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae 238 (568)
T 2c31_A 161 PGGVYVDLPAKLFGQTISVEEANKLLFKPIDPAP--AQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVE 238 (568)
T ss_dssp CCEEEEEEETHHHHCEEEHHHHHHHCCCCSCSSC--CCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHH
T ss_pred CceEEEeCCHHHhhccccccccccccccccCCCC--CCCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHHHHH
Confidence 799999999998642111000 00000000000 11234567999999999999999999999988889999999999
Q ss_pred HhCCceEeCCCCccccCCCCCCccccccCC----------CCCCc---ccccc-cccC-CCccEEEEcCCcceeccCCcc
Q 044559 278 ACGYAVAVMPSAKGLVPEHHPHFIGTYWGA----------VSTAF---FSVGY-SLLL-KKEKAVILQPDRVVIANGPAF 342 (585)
Q Consensus 278 ~~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~----------~~~~~---~~~~~-~~~~-~~~~~i~vd~d~~~i~~~~~~ 342 (585)
++|+||++|++|||.+|++||+++|..... .+... .+.++ ..+. ++.++||||+|+.+++ ....
T Consensus 239 ~~~~Pv~~t~~~~g~~~~~~p~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~-~~~~ 317 (568)
T 2c31_A 239 ETGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMD-SNQP 317 (568)
T ss_dssp HHTCCEEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTT-SSSC
T ss_pred HhCCCEEecccccccCCCCChhhcchHHHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhc-CCcC
Confidence 999999999999999999999999864210 01110 11121 2343 5678999999999886 3322
Q ss_pred c----cccHHHHHHHHHHHhccCc---chh-hhhccccC---CCCCC--CCCCCCCCcCHHHHHHHHHhhC--CCCCEEE
Q 044559 343 G----CVLMKDFLKALSKRLKSNT---TAY-ENYHRIYV---PEGQP--PKCEPKEPLRVNVLFQHIQKML--SSETAVI 407 (585)
Q Consensus 343 ~----~~~~~~~l~~L~~~l~~~~---~~~-~~~~~~~~---~~~~~--~~~~~~~~i~~~~~~~~l~~~l--~~~~iiv 407 (585)
. ..|++.+|++|.+.+.... ..| ..+.+.+. ..... ....+..++++..+++.|++.+ |++.+++
T Consensus 318 ~~~~i~~d~~~~l~~L~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iv~ 397 (568)
T 2c31_A 318 IAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFMLANPDISLV 397 (568)
T ss_dssp CSEEEESCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHHHCCSSEEE
T ss_pred CCceeeCCHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhcCCCCeEEE
Confidence 2 2479999999988775421 112 11111000 00000 0000134689999999999999 9899999
Q ss_pred ecCCccccccc-cccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEE
Q 044559 408 AETGDSWFNCQ-KLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFL 486 (585)
Q Consensus 408 ~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV 486 (585)
.|.|++..+.. .+....+.+++.++++|+||+++|+|+|++++ |+++|++++|||||+|+++||+|++++++|+++||
T Consensus 398 ~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~ivv 476 (568)
T 2c31_A 398 NEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-TGKPVIAVEGDSAFGFSGMELETICRYNLPVTVII 476 (568)
T ss_dssp EESSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEEE
T ss_pred ECChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEE
Confidence 99777655433 23333444588889999999999999999999 89999999999999999999999999999999999
Q ss_pred EeCCcc-eeeeee-cCCCc--CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCC
Q 044559 487 INNGGY-TIEVEI-HDGPY--NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDD 562 (585)
Q Consensus 487 ~NN~~~-~~~~~~-~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
+||++| .+.... +.+.+ ..++.+||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++++
T Consensus 477 ~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~liev~~~~~~ 549 (568)
T 2c31_A 477 MNNGGIYKGNEADPQPGVISCTRLTRGRYDMMMEAFGG-----KGYVANTPAELKAALEEAVA--SGKPCLINAMIDPDA 549 (568)
T ss_dssp EESSBSSCSCCCCSBTTBCCTTBCCCCCHHHHHHTTTC-----EEEEESSHHHHHHHHHHHHH--HTSCEEEEEEBCTTS
T ss_pred EeCchhHHHHHHHhhcCCcccCcCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecccc
Confidence 999995 543211 12211 12567999999999999 99999999999999999986 789999999999999
Q ss_pred ChHHHHHHHHHhhh
Q 044559 563 TSKELLEWGSRVSA 576 (585)
Q Consensus 563 ~~~~~~~~~~~~~~ 576 (585)
.++....|+...++
T Consensus 550 ~~~~~~~~~~~~~~ 563 (568)
T 2c31_A 550 GVESGRIKSLNVVS 563 (568)
T ss_dssp SCC-----------
T ss_pred CCCcccccccchhh
Confidence 99888777765544
No 21
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=4.2e-82 Score=698.48 Aligned_cols=506 Identities=19% Similarity=0.215 Sum_probs=397.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
.|+++++|++.|+++||++|||+||+++++|++++.+ .+|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 7 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~ 85 (564)
T 2q28_A 7 MTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQA-EGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNG 85 (564)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHH-TTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHH
T ss_pred cCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHh-CCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHH
Confidence 3799999999999999999999999999999999976 479999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhhHHHHHHHHHHHhhhc-C
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-S 200 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 200 (585)
++||++|+++++|||+|||+++....+.+ .+..|..||.++|+++|||++++++++++++.+++|++.|.++ +
T Consensus 86 ~~gi~~A~~~~vPll~itg~~~~~~~~~~------~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 159 (564)
T 2q28_A 86 LTALANATVNGFPMIMISGSSDRAIVDLQ------QGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRP 159 (564)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTT------SCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCC------CCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998755421 1123456899999999999999999999999999999999985 7
Q ss_pred CcEEEEecCCCCCCCCCCC--CCCCCCCcCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHH
Q 044559 201 KPVYISVACNLPAIPHPTF--SREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADA 278 (585)
Q Consensus 201 GPV~i~iP~dv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 278 (585)
|||||+||.|++..+.+.. .....+. ..+. ....++.+.+++++++|.+||||+|++|.|+.++++.++|++|||+
T Consensus 160 GPV~l~iP~dv~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~ 237 (564)
T 2q28_A 160 GGVYLDLPANVLAATMEKDEALTTIVKV-ENPS-PALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIES 237 (564)
T ss_dssp CEEEEEEEHHHHHCEEEHHHHHHTCCCC-SCSS-CCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHH
T ss_pred ceEEEEcCHHHhhccccccccccccccc-cCCC-CCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHHH
Confidence 9999999999864311100 0000000 1001 1112345679999999999999999999999888899999999999
Q ss_pred hCCceEeCCCCccccCCCCCCccccccCC----------CCCCc---ccccccccCCCccEEEEcCCcceeccCCccc--
Q 044559 279 CGYAVAVMPSAKGLVPEHHPHFIGTYWGA----------VSTAF---FSVGYSLLLKKEKAVILQPDRVVIANGPAFG-- 343 (585)
Q Consensus 279 ~~~Pv~tt~~gkg~~~~~hp~~~g~~~g~----------~~~~~---~~~~~~~~~~~~~~i~vd~d~~~i~~~~~~~-- 343 (585)
+|+||++|++|||.+|++||+++|..... .+... .+.++..+.++.++||||+|+.+++ .....
T Consensus 238 ~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~ 316 (564)
T 2q28_A 238 AQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEID-SNRPIAV 316 (564)
T ss_dssp HTCCEEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGTTTSCTTCEEEEEESCGGGTT-SSSCCSE
T ss_pred hCCCEEeccCccccCCCCChhhcChHHHhHhhcCCEEEEECCcccccccccccccCCCCeEEEEeCCHHHhc-CCCCCCe
Confidence 99999999999999999999999864110 01110 1112223445678999999999886 33222
Q ss_pred --cccHHHHHHHHHHHhccCc----c-hhhhhccccC---CCCCCCCCCCCCCcCHHHHHHHHHhhC--CCCCEEEecCC
Q 044559 344 --CVLMKDFLKALSKRLKSNT----T-AYENYHRIYV---PEGQPPKCEPKEPLRVNVLFQHIQKML--SSETAVIAETG 411 (585)
Q Consensus 344 --~~~~~~~l~~L~~~l~~~~----~-~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~l~~~l--~~~~iiv~d~G 411 (585)
..|++.+|++|.+.+.... . |+..+.+.+. ............++++..+++.|++.+ |++.+++.|.|
T Consensus 317 ~i~~d~~~~l~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~ivv~dg~ 396 (564)
T 2q28_A 317 PVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGA 396 (564)
T ss_dssp EEESCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHTTCTTCEEEEESS
T ss_pred EEEcCHHHHHHHHHHHhhhcCcCCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 2478999999988765321 1 2211111000 000000011234689999999999999 88999999977
Q ss_pred cccccccc-ccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCC
Q 044559 412 DSWFNCQK-LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490 (585)
Q Consensus 412 ~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~ 490 (585)
++..+... +....+.+++.++++|+||+++|+|+|++++ |+++|++++|||||+|+++||+|++++++|+++||+||+
T Consensus 397 ~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~ivv~NN~ 475 (564)
T 2q28_A 397 NTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNG 475 (564)
T ss_dssp HHHHHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEEEEECS
T ss_pred hHHHHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEEEeCc
Confidence 66544332 3333344478888999999999999999999 899999999999999999999999999999999999999
Q ss_pred cc-eeeeee--cCCCc---CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCCh
Q 044559 491 GY-TIEVEI--HDGPY---NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTS 564 (585)
Q Consensus 491 ~~-~~~~~~--~~~~~---~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
+| ++.... +.+.+ ...+.+||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++++.+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~liev~~~~~~~~ 548 (564)
T 2q28_A 476 GIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDAFRG-----VGYNVTTTDELRHALTTGIQ--SRKPTIINVVIDPAAGT 548 (564)
T ss_dssp BSSCSCCCCTTSSCCCCTTBCCTTCCGGGGGGGGTC-----EEEEECSHHHHHHHHHHHHH--HTSCEEEEEEBCTTSSC
T ss_pred hhHHHHHHHHhccCCccccccCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeccccCC
Confidence 95 653221 12211 12246899999999999 99999999999999999986 78999999999998876
Q ss_pred HH
Q 044559 565 KE 566 (585)
Q Consensus 565 ~~ 566 (585)
+.
T Consensus 549 ~~ 550 (564)
T 2q28_A 549 ES 550 (564)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 22
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=7.2e-81 Score=686.28 Aligned_cols=507 Identities=14% Similarity=0.086 Sum_probs=378.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 121 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~ 121 (585)
.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||+ |||++|+|||++|+
T Consensus 7 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~ 86 (556)
T 3hww_A 7 NRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANL 86 (556)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTT
T ss_pred hhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhh
Confidence 37899999999999999999999999999999999876789999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhh------HHHHHHHHHHH
Q 044559 122 LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLED------AHELIDTAVST 195 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~------~~~~l~~A~~~ 195 (585)
++||++||.+++|||+|||+++....+++. +|..||.++|+++|||++++.++++ +++.+++|++
T Consensus 87 ~~gia~A~~d~vPll~itG~~~~~~~g~~~--------~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~- 157 (556)
T 3hww_A 87 YPALIEAGLTGEKLILLTADRPPELIDCGA--------NQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALG- 157 (556)
T ss_dssp HHHHHHHHHHCCCEEEEEEECCGGGSSSSC--------TTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHhCCCeEEEeCCCCHHHhccCC--------CccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHh-
Confidence 999999999999999999999999777652 2356889999999999999998864 7788888872
Q ss_pred hhhcCCcEEEEecCCCCCCCCCCCCC----CCCCC---cCCCCCCChhhHHHHH-HHHHHHHHhcCCCEEEcCCcccccc
Q 044559 196 ALKESKPVYISVACNLPAIPHPTFSR----EPVPF---SLSPKLSNEMGLEAAV-EAAAEFLNKAVKPVLVAGPKMRVAK 267 (585)
Q Consensus 196 a~~~~GPV~i~iP~dv~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~v-~~~~~~L~~a~rpvIi~G~g~~~~~ 267 (585)
..++|||||+||.|++..+...... .+... ...+... ....+.+ .+++++|.+||||+|++|.+ +++
T Consensus 158 -~~r~GPV~i~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~A~rPvIl~G~~--~~~ 232 (556)
T 3hww_A 158 -TLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLR--EAPRLESEKQRDWFFWRQKRGVVVAGRM--SAE 232 (556)
T ss_dssp -SCCSSCEEEEEECCSCCSCCCSSTTHHHHHTTGGGGGCCSCSSC--CCCCCCCCCCTTHHHHTTSCEEEEECBC--CHH
T ss_pred -cCCCCCEEEeCCcCCCCCCCcccccccccccccccccccccccc--ccccccchhhhhhhhccCCCeEEEECCC--ChH
Confidence 2347999999999975431110000 00000 0001000 0000111 23456788999999999974 467
Q ss_pred hHHHHHHHHHHhCCceEeCCC-CccccCCCCCCccccccCC---CCCCc-----------ccccccccCCCccEEEEcCC
Q 044559 268 ACNAFVELADACGYAVAVMPS-AKGLVPEHHPHFIGTYWGA---VSTAF-----------FSVGYSLLLKKEKAVILQPD 332 (585)
Q Consensus 268 a~~~l~~lae~~~~Pv~tt~~-gkg~~~~~hp~~~g~~~g~---~~~~~-----------~~~~~~~~~~~~~~i~vd~d 332 (585)
+.++|++|||++|+||++|++ ++|.++++||+++|..... ...+. .+.+|....+..++||||+|
T Consensus 233 a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~~~~lg~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d 312 (556)
T 3hww_A 233 EGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDI 312 (556)
T ss_dssp HHHHHHHHHHHHTCCEEECTTTCSCCSSCCHHHHTTSHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCCSEEEEEESS
T ss_pred HHHHHHHHHHhcCCEEEEccCCCCCCCcCcHHHHhcCchhhhcccCCCEEEEcCCCcccHHHHHHHhcCCCCeEEEECCC
Confidence 899999999999999999985 8899999999988742110 01111 11123222233489999999
Q ss_pred cceeccCCcccc----ccHHHHHHHHHHHhccCcchhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEe
Q 044559 333 RVVIANGPAFGC----VLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIA 408 (585)
Q Consensus 333 ~~~i~~~~~~~~----~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~ 408 (585)
+.+++ .....+ .|++.+|++|.+.. ...|...+.+.+.... ........++++.++++.|.+.+|++++++.
T Consensus 313 ~~~~~-~~~~~~~~i~~d~~~~l~~l~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~ 388 (556)
T 3hww_A 313 EGRLD-PAHHRGRRLIANIADWLELHPAEK--RQPWCVEIPRLAEQAM-QAVIARRDAFGEAQLAHRICDYLPEQGQLFV 388 (556)
T ss_dssp CSCCC-TTCCSEEEEESCHHHHHHHSCCCC--CCCCCSSHHHHHHHHH-HHHHTTCCSSSHHHHHHTGGGTCCTTCEEEE
T ss_pred CccCC-CCCCceEEEEcCHHHHHHhccccc--chHHHHHHHHHHHHHH-HHHhhcccCcCHHHHHHHHHHhCCCCCeEEE
Confidence 99887 333322 37899998864321 1111111111000000 0000123579999999999999999999997
Q ss_pred cCCccccccccc-cccCCCeeeecC-CcccccchhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEE
Q 044559 409 ETGDSWFNCQKL-KLPKGCGYEFQM-QYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFL 486 (585)
Q Consensus 409 d~G~~~~~~~~~-~~~~~~~~~~~~-~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV 486 (585)
+.++...+...+ ..+.+.+++.+. ++|.||+ +|+|+|+++| ++++||+++|||||+|+++||+|++++++|+++||
T Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~ivv 466 (556)
T 3hww_A 389 GNSLVVRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIV 466 (556)
T ss_dssp CSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-HCCCEEEEEEHHHHHHTGGGHHHHTTCSSCEEEEE
T ss_pred eCCcHHHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc-CCCcEEEEEccHHhhhcchhhHhhcccCCCcEEEE
Confidence 665443222111 234444567664 4566677 9999999999 79999999999999999999999999999999999
Q ss_pred EeCCcceeeeeec------CCCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 487 INNGGYTIEVEIH------DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 487 ~NN~~~~~~~~~~------~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+||++|+|.+.+. ...|.....+||.++|++||+ ++++|++.+||+++|+++++ .+||+||||.+++
T Consensus 467 ~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp~liev~~~~ 539 (556)
T 3hww_A 467 VNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFEL-----KYHRPQNWQELETAFADAWR--TPTTTVIEMVVND 539 (556)
T ss_dssp EESCC-----------------CCCCCCCCSHHHHHHTTC-----EEECCSSHHHHHHHHHHHTT--SSSEEEEEEECCS
T ss_pred EECCCCCcccCCCCcchhHHHhccCCCCCCHHHHHHHcCC-----cEEecCCHHHHHHHHHHHHh--CCCCEEEEEECCc
Confidence 9999999854321 112344468999999999999 99999999999999999986 7899999999999
Q ss_pred CCChHHHHHHHHHhhh
Q 044559 561 DDTSKELLEWGSRVSA 576 (585)
Q Consensus 561 ~~~~~~~~~~~~~~~~ 576 (585)
++.++.++++++.++.
T Consensus 540 ~~~~~~l~~~~~~~~~ 555 (556)
T 3hww_A 540 TDGAQTLQQLLAQVSH 555 (556)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHhhc
Confidence 9999999999988764
No 23
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.78 E-value=4.8e-19 Score=207.28 Aligned_cols=168 Identities=12% Similarity=0.176 Sum_probs=135.7
Q ss_pred CHHHHHHHHHhhCCCCCEEEecCCcccccc-cccccc------C-CCeeeecC--CcccccchhHH--------------
Q 044559 388 RVNVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLP------K-GCGYEFQM--QYGSIGWSVGA-------------- 443 (585)
Q Consensus 388 ~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~------~-~~~~~~~~--~~g~mG~~lpa-------------- 443 (585)
.+..+++.|.+.++++.+|+.|+|++.+|. .+...| + +..|..+. +.+.||+|+++
T Consensus 815 ge~~~ik~l~ql~g~~~iian~tGc~siw~~~~~~~~~~~~~~g~~p~~~~Slf~~~a~mG~G~~~~~~~~~~~~~~~~~ 894 (1231)
T 2c42_A 815 GETPYVRVITQLFGERMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARRTHLADLAA 894 (1231)
T ss_dssp SSHHHHHHHHHHHGGGEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhcCCCeEEEecCchHHHHHhhcccCCcccccCCCCcceecccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999999999999999998874 332211 1 12566664 67899999999
Q ss_pred -------------HH--------------------hhhhcCCC----------------CcEEEEEccc-hhcccHHHHH
Q 044559 444 -------------TL--------------------GYAQSVPE----------------KRVIACIGDG-SFQVTAQDVS 473 (585)
Q Consensus 444 -------------Ai--------------------GaalA~p~----------------r~vv~v~GDG-sf~~~~~eL~ 473 (585)
|| |++++.++ ++||+|.||| +|+|+++||.
T Consensus 895 ~~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~mg~~eL~ 974 (1231)
T 2c42_A 895 KALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIGYGGLD 974 (1231)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHTTTHHHHH
T ss_pred HHhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHHcchHHHH
Confidence 99 99998544 7899999999 9999999999
Q ss_pred HHHHhCCceEEEEEeCCcceeeeeecC-----CCc-------CCCCCCChHHHHHHhcCCCCCceeEEE----cCHHHHH
Q 044559 474 TMLRCGQKTIIFLINNGGYTIEVEIHD-----GPY-------NVIKNWNYTGLVDAIHNGEGKCWTTKV----FCEEELI 537 (585)
Q Consensus 474 ta~~~~lpv~ivV~NN~~~~~~~~~~~-----~~~-------~~~~~~d~~~la~a~G~~~~~~~~~~V----~~~~eL~ 537 (585)
|++++++||++||+||+.|+|...+.. +.. ....++||.++|++||+ .|++. +++++|.
T Consensus 975 ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a~G~-----~~va~~~v~~~~~~l~ 1049 (1231)
T 2c42_A 975 HVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMTYGY-----VYVATVSMGYSKQQFL 1049 (1231)
T ss_dssp HHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHTTSS-----SEEEEECTTTCHHHHH
T ss_pred HHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHHCCC-----CEEEEEeccCCHHHHH
Confidence 999999999999999999999432211 111 12345899999999999 78753 5899999
Q ss_pred HHHHhhcCCCCCCeEEEEEEcCCCC
Q 044559 538 EAIENATGPKKDCLCFIEVLVHKDD 562 (585)
Q Consensus 538 ~aL~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
++|++|++ .+||+||||.++...
T Consensus 1050 ~al~eAl~--~~GP~lI~v~~~c~~ 1072 (1231)
T 2c42_A 1050 KVLKEAES--FPGPSLVIAYATCIN 1072 (1231)
T ss_dssp HHHHHHHH--SSSCEEEEEECCCGG
T ss_pred HHHHHHHh--cCCCEEEEEeecCcc
Confidence 99999997 899999999998753
No 24
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.64 E-value=2e-16 Score=163.05 Aligned_cols=120 Identities=16% Similarity=0.060 Sum_probs=99.4
Q ss_pred cCCcccccchhHHHHhhhhcCC----CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 431 QMQYGSIGWSVGATLGYAQSVP----EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 431 ~~~~g~mG~~lpaAiGaalA~p----~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
..+.|.||+++|.|+|+++|.+ ++.|||++|||+|++. ..+|++|.++++|+++||.||+ |++.... ..
T Consensus 138 ~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~----~~ 212 (368)
T 1w85_A 138 LPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR-FAISTPV----EK 212 (368)
T ss_dssp CCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECS-EETTEEG----GG
T ss_pred CCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCC-ccceecc----cc
Confidence 3567999999999999999864 8899999999999985 3479999999999988888884 8873211 11
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
....+||.++|++||+ ++++|+ +++++.+++++|++ .+.++|+|||+.|.+
T Consensus 213 ~~~~~d~~~~a~a~G~-----~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r 267 (368)
T 1w85_A 213 QTVAKTLAQKAVAAGI-----PGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFR 267 (368)
T ss_dssp TCSCSCSGGGGGGTTC-----CEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred ccCCCCHHHHHHHCCC-----CEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 2245799999999999 899998 79999999998874 236799999999976
No 25
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.62 E-value=8.1e-16 Score=170.43 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=116.7
Q ss_pred cCHHHHHHHHHhhCC-CCCEEEecCCccc----cccc---cccccCCC-----------eeeecCCcccccchhHHHHhh
Q 044559 387 LRVNVLFQHIQKMLS-SETAVIAETGDSW----FNCQ---KLKLPKGC-----------GYEFQMQYGSIGWSVGATLGY 447 (585)
Q Consensus 387 i~~~~~~~~l~~~l~-~~~iiv~d~G~~~----~~~~---~~~~~~~~-----------~~~~~~~~g~mG~~lpaAiGa 447 (585)
+....++.+|...+. +++.++.|.|... ++.- .+...+.. .-....+.|+||+++|+|+|+
T Consensus 56 lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~ 135 (629)
T 2o1x_A 56 LGAVDIITALHYVLDSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGM 135 (629)
T ss_dssp HHTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHH
T ss_pred hhHHHHHHHHHhhcCCCCCeEEecCchHHHHHHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHH
Confidence 344566777766665 6788888888522 1110 01111110 002346689999999999999
Q ss_pred hhc----CCCCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceeeeeec-----------CCCcCCC----
Q 044559 448 AQS----VPEKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH-----------DGPYNVI---- 506 (585)
Q Consensus 448 alA----~p~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----------~~~~~~~---- 506 (585)
++| .++++|+|++|||+|+ |..++|.||.++++|+++ |+||++|++..... ...|..+
T Consensus 136 AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~-IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~ 214 (629)
T 2o1x_A 136 ALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLI-VLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAG 214 (629)
T ss_dssp HHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEE-EEEECSBSSSBCCSSHHHHC----------------
T ss_pred HHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEE-EEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHH
Confidence 999 4899999999999999 678999999999999754 56777898722110 0111110
Q ss_pred -------CC---------CChH---------HHHHHhcCCCCCceeE-EEc--CHHHHHHHHHhhcCCCCCCeEEEEEEc
Q 044559 507 -------KN---------WNYT---------GLVDAIHNGEGKCWTT-KVF--CEEELIEAIENATGPKKDCLCFIEVLV 558 (585)
Q Consensus 507 -------~~---------~d~~---------~la~a~G~~~~~~~~~-~V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v 558 (585)
.. .||. +++++||+ +++ +|+ +.++|.++|+++++ .++|+||+|.+
T Consensus 215 ~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~-----~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI~v~t 287 (629)
T 2o1x_A 215 KKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGV-----RYVGPVDGHNVQELVWLLERLVD--LDGPTILHIVT 287 (629)
T ss_dssp -----------------------------CCCTTGGGTC-----EEEEEEESSCHHHHHHHHHHHTT--SSSEEEEEEEC
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCC-----eEEeeECCcCHHHHHHHHHHHHh--cCCCEEEEEEE
Confidence 01 1543 78999999 888 885 89999999999986 78999999999
Q ss_pred CCCCCh
Q 044559 559 HKDDTS 564 (585)
Q Consensus 559 ~~~~~~ 564 (585)
.+..-.
T Consensus 288 ~kg~G~ 293 (629)
T 2o1x_A 288 TKGKGL 293 (629)
T ss_dssp CTTTTC
T ss_pred ecCCCC
Confidence 875433
No 26
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.62 E-value=3.1e-16 Score=163.45 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=99.4
Q ss_pred CCcccccchhHHHHhhhhcCC----CCcEEEEEccchhcccH--HHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCC
Q 044559 432 MQYGSIGWSVGATLGYAQSVP----EKRVIACIGDGSFQVTA--QDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p----~r~vv~v~GDGsf~~~~--~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
.+.|+||+++|.|+|+++|.+ ++.|+|++|||+|+++. ++|.+|.++++|+++||.|| +|++..... ..
T Consensus 159 ~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN-~~~i~~~~~----~~ 233 (400)
T 2bfd_A 159 TISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNN-GYAISTPTS----EQ 233 (400)
T ss_dssp CCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEGG----GT
T ss_pred ccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECC-ceeeeeccc----cc
Confidence 345899999999999999977 89999999999999987 99999999999999988888 788732111 12
Q ss_pred CCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 506 IKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
....||.++|++||+ ++++|+ +++++.+++++|++ ...++|+|||+.|.+
T Consensus 234 ~~~~d~~~~a~a~G~-----~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 234 YRGDGIAARGPGYGI-----MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp CSSSTTGGGTGGGTC-----EEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred CCCCCHHHHHHHcCC-----cEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 245899999999999 999997 68899999988873 125799999999954
No 27
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.62 E-value=4.7e-16 Score=160.87 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=90.1
Q ss_pred cccchhHHHHhhhhcCCCCcEEEEEccchhccc-HHH-HHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHH
Q 044559 436 SIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQD-VSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTG 513 (585)
Q Consensus 436 ~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~e-L~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~ 513 (585)
+||+++|+|+|++++.++++||+++|||+|+++ ++| |.+|.++++|+++||.||+ |++..... .....+||.+
T Consensus 149 ~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~~----~~~~~~d~~~ 223 (367)
T 1umd_A 149 HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-YAISVDYR----HQTHSPTIAD 223 (367)
T ss_dssp THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-EETTEEHH----HHCSSSCSGG
T ss_pred hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-eeeccChh----hccCCCCHHH
Confidence 566666666666666889999999999999999 899 9999999999888888888 99832110 1124579999
Q ss_pred HHHHhcCCCCCceeEEEcCHHHH------HHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 514 LVDAIHNGEGKCWTTKVFCEEEL------IEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 514 la~a~G~~~~~~~~~~V~~~~eL------~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+|++||+ ++++|+..+.+ +.+++++++ .++|+|||+.|.+
T Consensus 224 ~a~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~a~~--~~gP~lIe~~t~r 269 (367)
T 1umd_A 224 KAHAFGI-----PGYLVDGMDVLASYYVVKEAVERARR--GEGPSLVELRVYR 269 (367)
T ss_dssp GGGGTTS-----CEEEEETTCHHHHHHHHHHHHHHHHT--TCCCEEEEEECCC
T ss_pred HHHHcCC-----cEEEeCCCCHHHHHHHHHHHHHHHHh--cCCCEEEEEEeec
Confidence 9999999 89999866555 556666654 7899999999987
No 28
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.61 E-value=8.1e-16 Score=168.80 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=102.9
Q ss_pred CCcccccchhHHHHhhhhcCC-----------CCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceeeeee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP-----------EKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI 498 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p-----------~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
...|+||+++|+|+|+++|.+ +++|++++|||+|+ |+.++|.+|.++++|.+|+|+||++|++....
T Consensus 111 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~ 190 (632)
T 3l84_A 111 IATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDV 190 (632)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEG
T ss_pred cCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccch
Confidence 345899999999999999987 89999999999999 78899999999999999999999999883221
Q ss_pred cCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 499 HDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 499 ~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
......||.+++++||+ ++++|+ +.++|.++|+++.+ .++|+||+|.|.+
T Consensus 191 -----~~~~~~d~~~~~~a~G~-----~~~~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~k 242 (632)
T 3l84_A 191 -----GLAFNENVKMRFEAQGF-----EVLSINGHDYEEINKALEQAKK--STKPCLIIAKTTI 242 (632)
T ss_dssp -----GGTCCCCHHHHHHHTTC-----EEEEEETTCHHHHHHHHHHHHT--CSSCEEEEEECCT
T ss_pred -----hhhcChhHHHHHHHcCC-----eEEEEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEe
Confidence 11235899999999999 899996 89999999999986 8899999999975
No 29
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.61 E-value=7.5e-16 Score=160.95 Aligned_cols=163 Identities=13% Similarity=0.028 Sum_probs=125.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhH
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIA---EPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 119 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~ 119 (585)
.|+|.+++++.+.+.|++++||+||+...++++.|.+ ..+++++.+.||.+|+.||.|++++.+| +++.|+|||++
T Consensus 22 ~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r-~~~~ts~~G~~ 100 (395)
T 1yd7_A 22 FIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK-AMTATSGPGFS 100 (395)
T ss_dssp EEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC-EEEEEETTHHH
T ss_pred EeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc-EEEEeCchHHH
Confidence 4899999999999999999999999999999998864 3469999999999999999999999888 44578999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHh-h-hc--ceeEEEEEeCChhhHHHHHHHHHHH
Q 044559 120 SVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR-C-FQ--TVTCYQAVVNNLEDAHELIDTAVST 195 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~-~-~~--~~tk~~~~v~~~~~~~~~l~~A~~~ 195 (585)
+++.+|..+...++|+++++++++....+..... +..|... . .. ++.++.....+++++.+++..||++
T Consensus 101 ~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~-------~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~l 173 (395)
T 1yd7_A 101 LMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLP-------AQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNL 173 (395)
T ss_dssp HHTTTCC----CCCCEEEEEEC---------------------------------CCCCEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCccc-------chhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999876633311100 1111111 1 22 4567888889999999999999999
Q ss_pred hhhcCCcEEEEecCCCCC
Q 044559 196 ALKESKPVYISVACNLPA 213 (585)
Q Consensus 196 a~~~~GPV~i~iP~dv~~ 213 (585)
|...+.||.+.+|.++.+
T Consensus 174 A~~~~~PVi~~~~~~l~h 191 (395)
T 1yd7_A 174 SEKYRTPVILLTDAEVGH 191 (395)
T ss_dssp HHHHTSEEEEEECHHHHH
T ss_pred HHHHCCCEEEEcchhHhC
Confidence 998789999999988744
No 30
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.60 E-value=1.1e-15 Score=169.52 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=100.5
Q ss_pred CCcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|+|+|+++|.+ +++|+|++|||+|+ |+.++|.+|.++++|.+|+|+||++|++.
T Consensus 152 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~ 231 (711)
T 3uk1_A 152 TTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISID 231 (711)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred cCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccc
Confidence 346899999999999999977 78999999999999 57889999999999999999999999883
Q ss_pred eeecCCCcCCCCCCChHHHHHHhcCCCCCceeEE-Ec--CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 496 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTK-VF--CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
... ......||.+++++||+ ++++ |+ +.++|.++|+++.+ .++|+||+|.|.+
T Consensus 232 ~~~-----~~~~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~k 287 (711)
T 3uk1_A 232 GDV-----VNWFHDDTPKRFEAYGW-----NVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRI 287 (711)
T ss_dssp EEG-----GGTCCCCHHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC--
T ss_pred cch-----hhhcCCCHHHHHHHcCC-----cEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEcccc
Confidence 221 11135899999999999 8998 64 89999999999986 7899999999875
No 31
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.60 E-value=1.6e-15 Score=157.90 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=95.2
Q ss_pred CCcccccchhHHHHhhhhcC----CCCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCC
Q 044559 432 MQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~----p~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
.+.|.||+++|.|+|+++|. +++.||+++|||+|.+. .++|++|.++++|+++||.|| +|++..... ..
T Consensus 178 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN-~~gi~~~~~----~~ 252 (407)
T 1qs0_A 178 TISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNN-QWAISTFQA----IA 252 (407)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEEC-SEETTEEGG----GG
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECC-Ccceeeccc----cc
Confidence 34689999999999999985 58899999999999986 577999999999955555555 798732111 11
Q ss_pred C-CCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 506 I-KNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 506 ~-~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
. ...||.++|++||+ .+++|+ +++++.+++++|++ .+.++|+|||+.|.+
T Consensus 253 ~~~~~d~a~~a~a~G~-----~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 307 (407)
T 1qs0_A 253 GGESTTFAGRGVGCGI-----ASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYR 307 (407)
T ss_dssp TTTTCCSTHHHHHTTC-----EEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred cCCCCCHHHHHHHcCC-----eEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 1 35799999999999 999998 67888888888763 136899999999976
No 32
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.58 E-value=2.5e-15 Score=166.07 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=98.4
Q ss_pred CCcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|+|+|+++|.+ +++|+|++|||+|+ |+.++|.+|.++++|.+|+|+||++|++.
T Consensus 113 ~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~ 192 (663)
T 3kom_A 113 TTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISID 192 (663)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC----
T ss_pred cCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccc
Confidence 357899999999999999976 78999999999998 57889999999999999999999999883
Q ss_pred eeecCCCcCCCCCCChHHHHHHhcCCCCCceeE-EEc--CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 496 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTT-KVF--CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
.. .......||.+++++||+ +++ +|+ +.++|.++|+++.+ ..++|+||++.|.+
T Consensus 193 ~~-----~~~~~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~A~~-~~~~P~lI~~~T~k 249 (663)
T 3kom_A 193 GD-----TKGWFSDNTPERFRAYGW-----HVIENVDGHDFVAIEKAINEAHS-QQQKPTLICCKTVI 249 (663)
T ss_dssp -C-----GGGTCCCCHHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHHH-CSSSCEEEEEECCT
T ss_pred cc-----hhhhcchhHHHHHHHCCC-----eEEEEEcCCCHHHHHHHHHHHHh-cCCCCEEEEEeccc
Confidence 21 112235899999999999 898 786 89999999999973 25899999999874
No 33
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.58 E-value=3.7e-15 Score=165.01 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=101.8
Q ss_pred CcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceeee
Q 044559 433 QYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIEV 496 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~ 496 (585)
..|+||+++|+|+|+++|.+ +++|+|++|||+++ |+.++|.+|.++++|.+|+|+||++|++..
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~ 217 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDG 217 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSS
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeeccc
Confidence 56899999999999999976 88999999999999 578999999999999999999999999832
Q ss_pred eecCCCcCCCCCCChHHHHHHhcCCCCCceeEEE---cCHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 497 EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKV---FCEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 497 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V---~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
.. ......|+.+++++||+ ++++| .+.++|.++|+++.+ ..++|+||+|.|.+
T Consensus 218 ~~-----~~~~~~d~~~~~~a~G~-----~~~~v~DG~d~~~l~~Al~~a~~-~~~~P~lI~v~T~k 273 (690)
T 3m49_A 218 DL-----NRSFSESVEDRYKAYGW-----QVIRVEDGNDIEAIAKAIEEAKA-DEKRPTLIEVRTTI 273 (690)
T ss_dssp BG-----GGTCCCCHHHHHHHHTC-----EEEEESCTTCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred ch-----hhccchhHHHHHHHcCC-----cEEEEecCCCHHHHHHHHHHHHh-cCCCCEEEEEEeec
Confidence 21 12235799999999999 99999 689999999999973 35899999999875
No 34
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.57 E-value=4.3e-15 Score=163.53 Aligned_cols=116 Identities=20% Similarity=0.132 Sum_probs=98.9
Q ss_pred CCcccccchhHHHHhhhhcCC-----CCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 432 MQYGSIGWSVGATLGYAQSVP-----EKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p-----~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+.|+||+++|+|+|+++|.+ +++|+|++|||+|+ |+.++|.+|.++++|.+++|+||++|++.... -.
T Consensus 118 ~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~----~~ 193 (616)
T 3mos_A 118 VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPA----PL 193 (616)
T ss_dssp SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBC----TT
T ss_pred ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCc----cc
Confidence 357899999999999999976 68999999999999 78899999999999999999999999983211 01
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
.....||.+++++||+ ++++|+ +.++|.++|+++ .++|+||+|.|.+
T Consensus 194 ~~~~~~~~~~~~a~G~-----~~~~VdG~d~~~l~~al~~~----~~~P~lI~v~T~k 242 (616)
T 3mos_A 194 QHQMDIYQKRCEAFGW-----HAIIVDGHSVEELCKAFGQA----KHQPTAIIAKTFK 242 (616)
T ss_dssp TTCHHHHHHHHHHTTC-----EEEEEETTCHHHHHHHHHSC----CSSCEEEEEECCT
T ss_pred ccChHHHHHHHHHcCC-----eEEEEcCCCHHHHHHHHHhc----CCCCEEEEEEEec
Confidence 1234689999999999 899995 899999999764 5799999999975
No 35
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.57 E-value=1.2e-14 Score=160.80 Aligned_cols=166 Identities=15% Similarity=0.194 Sum_probs=109.6
Q ss_pred cCHHHHHHHHHhhCC-CCCEEEecCCccccccc----------cccc-------cCCCe-eeecCCcccccchhHHHHhh
Q 044559 387 LRVNVLFQHIQKMLS-SETAVIAETGDSWFNCQ----------KLKL-------PKGCG-YEFQMQYGSIGWSVGATLGY 447 (585)
Q Consensus 387 i~~~~~~~~l~~~l~-~~~iiv~d~G~~~~~~~----------~~~~-------~~~~~-~~~~~~~g~mG~~lpaAiGa 447 (585)
+....+...|...+. +++.++.|.|...+... .++. |.... -....+.|+||+++|+|+|+
T Consensus 54 lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~ 133 (621)
T 2o1s_A 54 LGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGI 133 (621)
T ss_dssp HTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCCCEEEEeCchHHHHHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHH
Confidence 445566666666665 67778878774211000 0111 11100 01224579999999999999
Q ss_pred hhcC----CCCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceeeeeec-----------CCCcCC-----
Q 044559 448 AQSV----PEKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH-----------DGPYNV----- 505 (585)
Q Consensus 448 alA~----p~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----------~~~~~~----- 505 (585)
++|. ++++|+|++|||+|+ |..++|++|.++++|+++| +||++|++..... ...|..
T Consensus 134 AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~v-vnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~ 212 (621)
T 2o1s_A 134 AVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVI-LNDNEMSISENVGALNNHLAQLLSGKLYSSLREGG 212 (621)
T ss_dssp HHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE-EEECC------------------------------
T ss_pred HHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE-EeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHH
Confidence 9985 789999999999999 5678999999999998655 5777898732110 011110
Q ss_pred --CC------------CCCh-------HHHHHHhcCCCCCceeE-EE--cCHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 506 --IK------------NWNY-------TGLVDAIHNGEGKCWTT-KV--FCEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 506 --~~------------~~d~-------~~la~a~G~~~~~~~~~-~V--~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+. ..|| .+++++||+ +++ +| .+.++|.++|+++++ .++|+||||.|.+
T Consensus 213 ~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~-----~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI~v~t~k 284 (621)
T 2o1s_A 213 KKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGF-----NYIGPVDGHDVLGLITTLKNMRD--LKGPQFLHIMTKK 284 (621)
T ss_dssp --------------------------CHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHHH--SCSEEEEEEECCC
T ss_pred HHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCC-----eEeeeeCCCCHHHHHHHHHHHHH--cCCCEEEEEEEec
Confidence 00 0144 689999999 888 78 489999999999986 7899999999976
No 36
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.57 E-value=3.2e-15 Score=165.86 Aligned_cols=117 Identities=18% Similarity=0.125 Sum_probs=101.9
Q ss_pred CCcccccchhHHHHhhhhcC--------------CCCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 432 MQYGSIGWSVGATLGYAQSV--------------PEKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~--------------p~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|+|+|+++|. ++++|+|++|||+++ |+.++|.+|.++++|.+|+|+||++|++.
T Consensus 115 ~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 194 (651)
T 2e6k_A 115 VTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISID 194 (651)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETT
T ss_pred eccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCcccc
Confidence 46799999999999999985 378999999999999 67889999999999999999999999983
Q ss_pred eeecCCCcCCCCCCChHHHHHHhcCCCCCceeE-EEc--CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 496 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTT-KVF--CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
..... . ...|+.+++++||+ +++ +|+ +.++|.++|+++.+ .++|+||++.|.+
T Consensus 195 ~~~~~----~-~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~k 250 (651)
T 2e6k_A 195 GPTDL----A-FTEDVLARYRAYGW-----QTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHI 250 (651)
T ss_dssp EEGGG----T-CCSCHHHHHHHTTC-----EEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCT
T ss_pred ccccc----c-cCccHHHHHHhCCC-----eEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEe
Confidence 22111 1 25799999999999 898 887 89999999999986 7899999999985
No 37
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.56 E-value=5.3e-15 Score=164.58 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=102.3
Q ss_pred cCCcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCccee
Q 044559 431 QMQYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTI 494 (585)
Q Consensus 431 ~~~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~ 494 (585)
..+.|+||+++|+|+|+++|.+ +++|+|++|||+|+ |+.++|.+|.++++|.+|+|+||++|++
T Consensus 110 ~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i 189 (669)
T 2r8o_A 110 ETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISI 189 (669)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET
T ss_pred ccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEe
Confidence 3567999999999999999965 78999999999999 6788999999999999999999999998
Q ss_pred eeeecCCCcCCCCCCChHHHHHHhcCCCCCceeE-EEc--CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 495 EVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTT-KVF--CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 495 ~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~V~--~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
...... . ...|+.+++++||+ +++ +|+ +.++|.++|+++.+ ..++|+||++.|.+
T Consensus 190 ~~~~~~----~-~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~T~k 247 (669)
T 2r8o_A 190 DGHVEG----W-FTDDTAMRFEAYGW-----HVIRDIDGHDAASIKRAVEEARA-VTDKPSLLMCKTII 247 (669)
T ss_dssp TEEGGG----T-CCCCHHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred cccccc----c-cCccHHHHHHHCCC-----eEEeEECCCCHHHHHHHHHHHHh-cCCCCEEEEEEeEe
Confidence 322111 1 24799999999999 898 887 99999999999874 35899999999976
No 38
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.55 E-value=6.6e-15 Score=163.82 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=102.2
Q ss_pred CCcccccchhHHHHhhhhcC--------------CCCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 432 MQYGSIGWSVGATLGYAQSV--------------PEKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~--------------p~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|+|+|+++|. ++++|+|++|||+++ |+.++|.+|.+++|+.+|+|+||++|+|.
T Consensus 124 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 203 (675)
T 1itz_A 124 VTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISID 203 (675)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred ECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCC
Confidence 45789999999999999996 588999999999999 78999999999999999999999999983
Q ss_pred eeecCCCcCCCCCCChHHHHHHhcCCCCCceeE-EEc---CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 496 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTT-KVF---CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~V~---~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
..... . ...|+.+++++||+ +++ +|+ +.++|.++|+++.+ ..++|+||++.|.+
T Consensus 204 ~~~~~----~-~~~d~~~~~~a~G~-----~~~~~vdG~~d~~~l~~al~~a~~-~~~~P~lI~~~T~k 261 (675)
T 1itz_A 204 GDTEI----A-FTEDVSTRFEALGW-----HTIWVKNGNTGYDDIRAAIKEAKA-VTDKPTLIKVTTTI 261 (675)
T ss_dssp EEGGG----T-CCSCHHHHHHHTTC-----EEEEESCTTTCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred CChhh----h-cChhHHHHHHhCCC-----EEEEEecCCCCHHHHHHHHHHHHH-CCCCeEEEEEeeec
Confidence 22111 1 26899999999999 898 887 89999999999873 25899999999976
No 39
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.54 E-value=6.9e-15 Score=163.84 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=101.8
Q ss_pred CCcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|+|+|+++|.+ +++|+|++|||+|+ |+.++|.+|.++++|.+|+|+||++|++.
T Consensus 113 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 192 (680)
T 1gpu_A 113 VTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITID 192 (680)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred eccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEe
Confidence 456899999999999999965 78999999999999 77899999999999999999999999983
Q ss_pred eeecCCCcCCCCCCChHHHHHHhcCCCCCceeE-EEc---CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 496 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTT-KVF---CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~V~---~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
..... . ...|+.+++++||+ +++ +|+ +.++|.++|+++.+ ..++|+||++.|.+
T Consensus 193 ~~~~~----~-~~~d~~~~~~a~G~-----~~~~~vdG~~d~~~l~~al~~A~~-~~~~P~lI~~~T~k 250 (680)
T 1gpu_A 193 GATSI----S-FDEDVAKRYEAYGW-----EVLYVENGNEDLAGIAKAIAQAKL-SKDKPTLIKMTTTI 250 (680)
T ss_dssp EEGGG----T-CCCCHHHHHHHHTC-----EEEEESCTTTCHHHHHHHHHHHHH-CTTSCEEEEEECCT
T ss_pred ccccc----c-cCccHHHHHHhcCC-----eEEEEecCCCCHHHHHHHHHHHHH-CCCCCEEEEEEeec
Confidence 22111 1 25799999999999 898 888 99999999999874 35899999999976
No 40
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.53 E-value=7.4e-15 Score=150.87 Aligned_cols=117 Identities=15% Similarity=0.076 Sum_probs=93.3
Q ss_pred CCcccccchhHHHHhhhhcCC----CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCC
Q 044559 432 MQYGSIGWSVGATLGYAQSVP----EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p----~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
.+.|.||+++|.|+|+++|.+ ++.|||++|||++.+. ..+|.+|..+++|+++||.|| +|++..... ..
T Consensus 137 ~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN-~~g~~t~~~----~~ 211 (365)
T 2ozl_A 137 GGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN-RYGMGTSVE----RA 211 (365)
T ss_dssp CCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEHH----HH
T ss_pred CCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECC-CcccCCCcc----cc
Confidence 445889999999999999975 8899999999999985 457999999999988877666 688732110 01
Q ss_pred CCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 506 IKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
....||.+ +++|+ .+++|+ +++++.+++++|++ .+.+||+|||+.+.+
T Consensus 212 ~~~~~~~~--ra~g~-----p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R 263 (365)
T 2ozl_A 212 AASTDYYK--RGDFI-----PGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYR 263 (365)
T ss_dssp CSCCCGGG--TTTTS-----CEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred cCCCCHHH--HhCCC-----CEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 13467776 78998 899998 79999999888763 236899999999964
No 41
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.48 E-value=5.6e-14 Score=156.18 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=100.4
Q ss_pred CCcccccchhHHHHhhhhcCC--------------CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcceee
Q 044559 432 MQYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGYTIE 495 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|.|+|+++|.+ +++|+|++|||++++. ..+|.+|.+++||.+|+|+||++|++.
T Consensus 113 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~ 192 (673)
T 1r9j_A 113 VTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISID 192 (673)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSS
T ss_pred eccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccc
Confidence 457899999999999999864 7899999999999964 777999999999999999999999983
Q ss_pred eeecCCCcCCCCCCChHHHHHHhcCCCCCceeE-EE---cCHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 496 VEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTT-KV---FCEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~V---~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+........|+.+.+++||+ +++ +| .+.++|.++++++.+ ..++|+||++.|.+
T Consensus 193 -----~~~~~~~~~d~~~~~~a~G~-----~~~~~vdG~~d~~~l~~Al~~A~~-~~~~P~lI~~~T~k 250 (673)
T 1r9j_A 193 -----GSTSLSFTEQCHQKYVAMGF-----HVIEVKNGDTDYEGLRKALAEAKA-TKGKPKMIVQTTTI 250 (673)
T ss_dssp -----SBGGGTCCCCHHHHHHHTTC-----EEEEESCTTTCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred -----cchhhccCHhHHHHHHHCCC-----eEEEEeCCCCCHHHHHHHHHHHHH-cCCCCEEEEEeccc
Confidence 21111125799999999999 898 78 789999999999873 36899999999865
No 42
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.43 E-value=1.3e-13 Score=126.82 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCCccccCCCCC--Cc--ccccc--CC-CCC---
Q 044559 241 AVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHP--HF--IGTYW--GA-VST--- 310 (585)
Q Consensus 241 ~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp--~~--~g~~~--g~-~~~--- 310 (585)
++++++++|.+||||+|++|+|+.++++.+++++|+|++++||++|.+|||+||++|| ++ +|.+. +. ...
T Consensus 23 ~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~~ 102 (170)
T 3cf4_G 23 SPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGL 102 (170)
T ss_dssp CHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCCS
T ss_pred HHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhhHH
Confidence 4889999999999999999999998899999999999999999999999999999999 99 88642 11 111
Q ss_pred Cc-----------ccc--------cccccCCCccEEEEcCCcceeccCCccccccHHHHHHHHHHHh
Q 044559 311 AF-----------FSV--------GYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRL 358 (585)
Q Consensus 311 ~~-----------~~~--------~~~~~~~~~~~i~vd~d~~~i~~~~~~~~~~~~~~l~~L~~~l 358 (585)
.. ..+ .|..+.+ .++|+++....... ...+..+.++++|+.|.+.+
T Consensus 103 ~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~~-~~iI~i~~~~~~~~-~~~~~~l~~~~~l~~L~~~~ 167 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKKFYINQVLSAAKNFSN-LKTIAIERGYIQNA-TMSFGNLSKADHYAALDELI 167 (170)
T ss_dssp SSSCCCSEEEEESCCHHHHHHHHHHHHHHCC-CCEEECSSSCCTTS-SEECCCCCHHHHHHHHHHHH
T ss_pred HHhhcCCEEEEECCccCccccccccccccCC-CeEEEECCCcccch-hhhhccCCHHHHHHHHHHHH
Confidence 11 111 2233445 67886654432111 34566678899999988765
No 43
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.24 E-value=1.3e-11 Score=136.51 Aligned_cols=118 Identities=18% Similarity=0.172 Sum_probs=97.6
Q ss_pred CCcccccchhHHHHhhhhcCC-----------------CCcEEEEEccchhccc--HHHHHHHHHhCCceEEEEEeCCcc
Q 044559 432 MQYGSIGWSVGATLGYAQSVP-----------------EKRVIACIGDGSFQVT--AQDVSTMLRCGQKTIIFLINNGGY 492 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p-----------------~r~vv~v~GDGsf~~~--~~eL~ta~~~~lpv~ivV~NN~~~ 492 (585)
...|.+|.++|.|+|+++|.+ +++|+|++|||+++.. ..++.+|.++++|-+|+|+||++|
T Consensus 130 ~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~ 209 (700)
T 3rim_A 130 ITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQI 209 (700)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred ccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 346899999999999998743 6789999999999964 557999999999988888899999
Q ss_pred eeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEE---cCHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 493 TIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKV---FCEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 493 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V---~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
++.... ......|+.+.+++||+ ++++| .+.++|.++|+++.+ ..++|+||++.|-+
T Consensus 210 si~~~~-----~~~~~~~~~~~~~a~G~-----~~~~V~DG~D~~al~~Al~~A~~-~~~~P~lI~~~T~k 269 (700)
T 3rim_A 210 SIEDDT-----NIALCEDTAARYRAYGW-----HVQEVEGGENVVGIEEAIANAQA-VTDRPSFIALRTVI 269 (700)
T ss_dssp ETTEEG-----GGTCCCCHHHHHHHHTC-----EEEEEECTTCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred ccccch-----hhccchhHHHHHHHcCC-----eEEEECCCCCHHHHHHHHHHHHH-cCCCCEEEEEEEEe
Confidence 873111 11135789999999999 99999 389999999999974 36899999999975
No 44
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.00 E-value=9.7e-11 Score=132.32 Aligned_cols=119 Identities=16% Similarity=0.067 Sum_probs=94.4
Q ss_pred CCcccccchhHHHHhhhhcCC--------------CCcEEEEEccchh--cccHHH-HHHHHHhCCc---eEEEEEeCCc
Q 044559 432 MQYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSF--QVTAQD-VSTMLRCGQK---TIIFLINNGG 491 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf--~~~~~e-L~ta~~~~lp---v~ivV~NN~~ 491 (585)
..-+.||.++|.|+|+++|.+ +..++|++|||+| ++..+| |.+|..+++| +++||.|| +
T Consensus 242 ~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN-~ 320 (868)
T 2yic_A 242 ANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-Q 320 (868)
T ss_dssp CCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEEC-S
T ss_pred CCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcC-C
Confidence 445789999999999999853 3479999999998 578888 9999999998 99999988 7
Q ss_pred ceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 492 YTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
|++........ ...++.++|++||+ ++++|+ +++++..++++|++ .+.++|+|||+.+.+
T Consensus 321 ~g~st~~~~~~----s~~~~~~~a~a~G~-----p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR 384 (868)
T 2yic_A 321 IGFTTAPTDSR----SSEYCTDVAKMIGA-----PIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 384 (868)
T ss_dssp CBTTBCHHHHC----SSSSTTGGGGGGTC-----CEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred cccccCccccc----cccCHHHHHHhCCC-----cEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 88732111000 23556788999999 899997 69999999988874 135799999999975
No 45
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=98.89 E-value=2.6e-10 Score=104.17 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=54.9
Q ss_pred HHHH-HHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCCccccCC-CC-C--Cccc
Q 044559 242 VEAA-AEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPE-HH-P--HFIG 302 (585)
Q Consensus 242 v~~~-~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~-~h-p--~~~g 302 (585)
++++ +++|.+||||+|++|+ +..+++.++|++|+|+ ++||++|.+|+|.||+ +| | +++|
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~G 87 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYAV 87 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEEC
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccccc
Confidence 5788 9999999999999999 9888999999999999 9999999999999999 99 8 5555
No 46
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=98.88 E-value=2.9e-09 Score=120.65 Aligned_cols=119 Identities=20% Similarity=0.215 Sum_probs=95.8
Q ss_pred cCCcccccchhHHHHhhhhcC-----------CCCcEEEEEccchhc--ccHHHHHHHHHhCCceEEEEEeCCcceeeee
Q 044559 431 QMQYGSIGWSVGATLGYAQSV-----------PEKRVIACIGDGSFQ--VTAQDVSTMLRCGQKTIIFLINNGGYTIEVE 497 (585)
Q Consensus 431 ~~~~g~mG~~lpaAiGaalA~-----------p~r~vv~v~GDGsf~--~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~ 497 (585)
....|+||.++++|+|+++++ .+++|+||+|||++. ++..+|..|.+++++-+|+|+||+.+.+
T Consensus 188 ~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si--- 264 (886)
T 2qtc_A 188 QFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRL--- 264 (886)
T ss_dssp CCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCS---
T ss_pred cccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCccc---
Confidence 345689999999999999873 478999999999999 5788899999999987888889998877
Q ss_pred ecCCCcCC--CCCCChHHHHHHhcCCCCCceeEEEc--------------------------------------------
Q 044559 498 IHDGPYNV--IKNWNYTGLVDAIHNGEGKCWTTKVF-------------------------------------------- 531 (585)
Q Consensus 498 ~~~~~~~~--~~~~d~~~la~a~G~~~~~~~~~~V~-------------------------------------------- 531 (585)
+++... ...-++.++.+++|+ ..++|.
T Consensus 265 --~~~v~~~~~~~~~l~~~~~~~G~-----~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~ 337 (886)
T 2qtc_A 265 --DGPVTGNGKIINELEGIFEGAGW-----NVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHF 337 (886)
T ss_dssp --SSBSCTTSCHHHHHHHHHHHTTC-----EEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHT
T ss_pred --CCCccccccccHHHHHHHHhCCC-----CEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhh
Confidence 232111 112468899999999 888873
Q ss_pred ---------------------------CHHHHHHHHHhhcCCCCCCeEEEEEEcCC
Q 044559 532 ---------------------------CEEELIEAIENATGPKKDCLCFIEVLVHK 560 (585)
Q Consensus 532 ---------------------------~~~eL~~aL~~a~~~~~~gp~vIeV~v~~ 560 (585)
+.++|.+++++|.+ ..++|+||+++|-+
T Consensus 338 F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~-~~~~PtlI~~~T~K 392 (886)
T 2qtc_A 338 FGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQE-TKGKATVILAHTIK 392 (886)
T ss_dssp STTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred cccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHH-cCCCCEEEEEeeee
Confidence 68899999999875 24699999999965
No 47
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=98.86 E-value=7.8e-10 Score=128.16 Aligned_cols=118 Identities=16% Similarity=0.070 Sum_probs=92.5
Q ss_pred CcccccchhHHHHhhhhcCC--------------CCcEEEEEccchh--cccHHH-HHHHHHhCCc---eEEEEEeCCcc
Q 044559 433 QYGSIGWSVGATLGYAQSVP--------------EKRVIACIGDGSF--QVTAQD-VSTMLRCGQK---TIIFLINNGGY 492 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~p--------------~r~vv~v~GDGsf--~~~~~e-L~ta~~~~lp---v~ivV~NN~~~ 492 (585)
.-+.||.++|.|+|+++|.+ +..++|++|||+| +...+| |.+|..+++| +++||.|| +|
T Consensus 488 n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN-~~ 566 (1113)
T 2xt6_A 488 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-QI 566 (1113)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEEC-SC
T ss_pred CCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeC-Cc
Confidence 34679999999999998853 3569999999998 677888 8999999998 99999988 78
Q ss_pred eeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 493 TIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 493 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
++........ ...++.+.|++||+ ++++|+ +++++..++++|++ .+.++|+|||+.+-+
T Consensus 567 gist~~~~~~----s~~~~~~~a~a~G~-----p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR 629 (1113)
T 2xt6_A 567 GFTTAPTDSR----SSEYCTDVAKMIGA-----PIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 629 (1113)
T ss_dssp BTTBCHHHHC----SSSSTTGGGGGGTC-----CEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred ccccCccccc----cccCHHHHHHhcCC-----cEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEc
Confidence 8732110000 12445678999999 899998 89999999888864 235799999999965
No 48
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=98.76 E-value=4.1e-09 Score=119.80 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=87.1
Q ss_pred CCcccccchhHHHHhhhhcCCCC---------cEEEEEccchh--cccHHH-HHHHHHhCCc---eEEEEEeCCcceeee
Q 044559 432 MQYGSIGWSVGATLGYAQSVPEK---------RVIACIGDGSF--QVTAQD-VSTMLRCGQK---TIIFLINNGGYTIEV 496 (585)
Q Consensus 432 ~~~g~mG~~lpaAiGaalA~p~r---------~vv~v~GDGsf--~~~~~e-L~ta~~~~lp---v~ivV~NN~~~~~~~ 496 (585)
..-+.+|.++|.|+|+++|.+.+ .||+++|||+| +....| |.+|..+++| +++||.||+ |++..
T Consensus 318 ~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~-~~ist 396 (933)
T 2jgd_A 318 FNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ-VGFTT 396 (933)
T ss_dssp CCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC------
T ss_pred ccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC-ccccC
Confidence 34467899999999999986543 79999999998 666777 8999999999 888888777 87732
Q ss_pred -eecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc--CHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 497 -EIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF--CEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 497 -~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~--~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.... .....++.+++++||+ .+++|+ +++++..++++|.+ ...++|+|||+.+-+
T Consensus 397 ~~~~~----~~~~~~~~~~a~a~g~-----p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR 456 (933)
T 2jgd_A 397 SNPLD----ARSTPYCTDIGKMVQA-----PIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYR 456 (933)
T ss_dssp --------------CGGGGGGTTTC-----CEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred CCHHh----cccchhHHHHHHHcCC-----CEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 1110 1123567888999999 899986 58889888888863 125789999999865
No 49
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.24 E-value=1.2e-05 Score=94.62 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=117.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc-----CCC-----CeEEeCcchHHHHHHHhHHhHhcCccEEEE
Q 044559 43 ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIA-----EPG-----LNLIGCCNELNAGYAADGYARSRGVGACVV 112 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~-----~~~-----i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~ 112 (585)
.|+|.+++++.. ..|++.++++|+++.+++.+.+.+ ... ..++.+.+|.+|..||.|.+.+..+++ ..
T Consensus 6 ~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~-t~ 83 (1231)
T 2c42_A 6 TTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTT-TF 83 (1231)
T ss_dssp EEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEE-EE
T ss_pred EccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChHh-hh
Confidence 478999999987 889999999999999999998841 122 489999999999999999776543444 45
Q ss_pred eCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEE-EEEeCChhhHHHHHHH
Q 044559 113 TFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QAVVNNLEDAHELIDT 191 (585)
Q Consensus 113 tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~ 191 (585)
|+|+|+.-+...|..+...++|+++...+++....+-. ..+ +..| . ++...+.| .....+++++.+++..
T Consensus 84 Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~gls-----i~~--~hsd-~-~~ar~~G~~vl~pss~QEa~dl~~~ 154 (1231)
T 2c42_A 84 TASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALS-----IFG--DHQD-I-YAARQTGFAMLASSSVQEAHDMALV 154 (1231)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBC-----CSC--CSHH-H-HTTTTSSCEEEECCSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCCc-----CCC--chhh-H-HHHhcCCcEEEECCCHHHHHHHHHH
Confidence 89999999999997766678999999998876532211 111 1112 1 22222222 3344689999999999
Q ss_pred HHHHhhhcCCcEEEEecC
Q 044559 192 AVSTALKESKPVYISVAC 209 (585)
Q Consensus 192 A~~~a~~~~GPV~i~iP~ 209 (585)
|+++|...+-||.+....
T Consensus 155 Af~lAek~~~PVi~~~Dg 172 (1231)
T 2c42_A 155 AHLAAIESNVPFMHFFDG 172 (1231)
T ss_dssp HHHHHHHHCCCEEEEEET
T ss_pred HHHHHHHcCCCEEEEecC
Confidence 999999888999887765
No 50
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=97.80 E-value=2.4e-05 Score=87.29 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=84.2
Q ss_pred CcccccchhHHHHhhhhcCCCCcEEEEEccchhccc-HHHHHHH----HHhCCceEEEEEeCCcceeeeeecCCCcC--C
Q 044559 433 QYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT-AQDVSTM----LRCGQKTIIFLINNGGYTIEVEIHDGPYN--V 505 (585)
Q Consensus 433 ~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~~-~~eL~ta----~~~~lpv~ivV~NN~~~~~~~~~~~~~~~--~ 505 (585)
..|.+|+|++.|+|+++.+|+.+|+|++|||...=. +...|-+ ..+++.-+++|++++++.+ +++-. .
T Consensus 173 ~tG~LGqGls~AvG~A~~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i-----~g~t~l~~ 247 (845)
T 3ahc_A 173 EGGELGYALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKI-----ANPTILAR 247 (845)
T ss_dssp CCSSTTCHHHHHHHHHTTCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSS-----SSBCHHHH
T ss_pred CCCCccchHhHHhhhhhcCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcC-----CCCccccc
Confidence 358999999999999999999999999999994331 1112222 2467888888999999987 33211 1
Q ss_pred CCCCChHHHHHHhcCCCCCceeE-EEc-----CHHHHHHHHHhhc---------------CCCCCCe--EEEEEEcCCCC
Q 044559 506 IKNWNYTGLVDAIHNGEGKCWTT-KVF-----CEEELIEAIENAT---------------GPKKDCL--CFIEVLVHKDD 562 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~-~V~-----~~~eL~~aL~~a~---------------~~~~~gp--~vIeV~v~~~~ 562 (585)
...-|+.+..++||+ +.+ .|+ +++++..++.+++ ....++| .+|-+++-+..
T Consensus 248 ~~~e~l~~rf~a~Gw-----~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~ 322 (845)
T 3ahc_A 248 ISDEELHDFFRGMGY-----HPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGW 322 (845)
T ss_dssp SCHHHHHHHHHHTTE-----EEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTT
T ss_pred cCcHHHHHHHHHCCC-----EEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccC
Confidence 234578999999998 776 664 5777776654222 1124689 99999886533
No 51
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=94.72 E-value=0.086 Score=53.31 Aligned_cols=116 Identities=14% Similarity=0.033 Sum_probs=77.0
Q ss_pred eEEeCc-chHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHHHHH-hh----h----cCC-cEEEEeCCCCCcccCCccc
Q 044559 84 NLIGCC-NELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG-AY----S----ENL-PLICIVGGPNSNDYGTNRI 152 (585)
Q Consensus 84 ~~i~~~-~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l~~-A~----~----~~~-PllvI~g~~~~~~~~~~~~ 152 (585)
|++.+- .|++++.+|.|+|...-+.++..|.++++.-++..|.+ +. . -++ ||+++.... .. +.+ .
T Consensus 68 r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~-g~--~~G-~ 143 (342)
T 2bfd_B 68 RVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWG-CV--GHG-A 143 (342)
T ss_dssp TEEECCSCHHHHHHHHHHHHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEES-CC--SSC-G
T ss_pred eEEEcCcCHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecC-CC--CCC-c
Confidence 777765 99999999999998843466666899997777777762 32 1 133 999885432 21 122 3
Q ss_pred cccccCCCChhHHHhhhcceeE-EEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 044559 153 LHHTIGLPDFSQELRCFQTVTC-YQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPA 213 (585)
Q Consensus 153 ~~~~~~~~~~~dq~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~~ 213 (585)
.||.+. ...+++.+.. ......+++++..+++.|++ .++||+|..|..+..
T Consensus 144 th~~~~------d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~p~~l~r 195 (342)
T 2bfd_B 144 LYHSQS------PEAFFAHCPGIKVVIPRSPFQAKGLLLSCIE----DKNPCIFFEPKILYR 195 (342)
T ss_dssp GGSSCC------CHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEEEGGGTT
T ss_pred chhhHh------HHHHHhcCCCcEEEeeCCHHHHHHHHHHHHh----cCCcEEEEecchhcC
Confidence 454332 2455666543 23455678888888888876 379999998876643
No 52
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=94.24 E-value=0.54 Score=51.38 Aligned_cols=150 Identities=14% Similarity=0.041 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhc-CCCCeEEe-CcchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHHH
Q 044559 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLIA-EPGLNLIG-CCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAI 125 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~-~~~i~~i~-~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l 125 (585)
+.|.+.+++ .=+.+.+-+.-....+.+.+.+ .++ |++. ...|++++.+|.|+|....+-++..|.++.+.-++..|
T Consensus 321 ~~L~~l~~~-d~~vv~~~aD~~~~~~~~~~~~~~p~-R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dqi 398 (616)
T 3mos_A 321 QALAKLGHA-SDRIIALDGDTKNSTFSEIFKKEHPD-RFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQI 398 (616)
T ss_dssp HHHHHHHHH-CTTEEEEESSCHHHHSHHHHHHHCGG-GEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHHH
T ss_pred HHHHHHHhh-CCCEEEEeCCcCCCcchhhHHHhCCC-CeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHHH
Confidence 334443333 3355555554333333444432 233 6765 46999999999999987655566677888888889999
Q ss_pred HHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEE-EeCChhhHHHHHHHHHHHhhhcCCcEE
Q 044559 126 AGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQA-VVNNLEDAHELIDTAVSTALKESKPVY 204 (585)
Q Consensus 126 ~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~-~v~~~~~~~~~l~~A~~~a~~~~GPV~ 204 (585)
..+...+.|++++.. +..-..+.+..-||. ..+..+++.+..... ...++.++..+++ .|...+||++
T Consensus 399 ~~~a~~~~~v~~v~~-~~g~~~G~dG~tH~~------~ed~a~l~~iP~l~V~~P~d~~e~~~~l~----~a~~~~gp~~ 467 (616)
T 3mos_A 399 RMAAISESNINLCGS-HCGVSIGEDGPSQMA------LEDLAMFRSVPTSTVFYPSDGVATEKAVE----LAANTKGICF 467 (616)
T ss_dssp HHHHHTTCCEEEEEE-SBSGGGCTTCGGGCB------SSHHHHHHTSTTEEEECCCSHHHHHHHHH----HHHTCCSEEE
T ss_pred HHHHHhCCCeEEEEE-CCCccccCCCCcccC------HHHHHHhcCCCCCEEEecCCHHHHHHHHH----HHHhcCCCEE
Confidence 888889999887643 222212322223332 234677777755433 3345555555554 4445589999
Q ss_pred EEecCC
Q 044559 205 ISVACN 210 (585)
Q Consensus 205 i~iP~d 210 (585)
|..|.+
T Consensus 468 ir~~r~ 473 (616)
T 3mos_A 468 IRTSRP 473 (616)
T ss_dssp EECCSS
T ss_pred EEEeCC
Confidence 999865
No 53
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=93.98 E-value=0.18 Score=55.10 Aligned_cols=118 Identities=15% Similarity=0.063 Sum_probs=84.2
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++-=| +..-.+..+.+|...++|+++|.-+-....+. . .
T Consensus 51 i~~i~~~~E~~---Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~g----~---~ 119 (590)
T 1ybh_A 51 IRNVLPRHEQG---GVFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIG----T---D 119 (590)
T ss_dssp CEECCCSSHHH---HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTT----T---T
T ss_pred ccEEeeCCHHH---HHHHHHHHHHHH-CCCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCccccC----C---C
Confidence 44554444322 346788887764 56777766555 45555889999999999999998876544321 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+...|...+.+.+-. +..++.+++++...+++|+. ....||+.|++..|
T Consensus 120 ~~Q~~d~~~~~~~~~k-----~~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 120 AFQETPIVEVTRSITK-----HNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp CTTCCCHHHHHGGGSS-----EEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cccccCHHHHHHHHhC-----eEEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 2345799999999987 88999999999888888875 23468999999875
No 54
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=93.94 E-value=0.23 Score=54.44 Aligned_cols=119 Identities=4% Similarity=-0.018 Sum_probs=84.6
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccch-hcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGS-FQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGs-f~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+..+++.+|++-=|. ..-.+..|.+|...++|+++|.-+-....+. . .
T Consensus 66 i~~i~~~~E~~---Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg~~p~~~~~----~---~ 135 (616)
T 2pan_A 66 IRHILARHVEG---ASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLH----K---E 135 (616)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEEECCGGGTT----T---T
T ss_pred CcEEeeCCHHH---HHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEecCCcccccC----c---c
Confidence 44555444332 3357888887754567777665553 3445889999999999999999877654321 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+...|...+++.+-. ..+++.+++++...|++|+. ....||+.|++..|
T Consensus 136 ~~Q~~d~~~~~~~~tk-----~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 136 DFQAVDIEAIAKPVSK-----MAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp CTTCCCHHHHHGGGSS-----EEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred cccccCHHHHHHHHHH-----hhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 2345899999999886 78899999998888888775 23468999999876
No 55
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=93.78 E-value=0.21 Score=50.31 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=77.7
Q ss_pred CeEEeC-cchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhhh---------cCCcEEEEeCCCCCcccCCcc
Q 044559 83 LNLIGC-CNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYS---------ENLPLICIVGGPNSNDYGTNR 151 (585)
Q Consensus 83 i~~i~~-~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~~---------~~~PllvI~g~~~~~~~~~~~ 151 (585)
-|++.+ ..|++++.+|.|+|.. |. .++..|.+..+.-++..|...-. .++||+++... .. .+...
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~--~g~~G 137 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GA--SAGVA 137 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SC--CSSCC
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cC--CCCCC
Confidence 378877 6999999999999987 55 66666788888767788775332 89998887653 21 22222
Q ss_pred ccccccCCCChhHHHhhhcceeEEE-EEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 152 ILHHTIGLPDFSQELRCFQTVTCYQ-AVVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 152 ~~~~~~~~~~~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
.-|+ + ..+ .+++.+..+. ....+++++..+++.|++ .++||+|..|..+
T Consensus 138 ~tHs--~---~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~~~~~ 187 (341)
T 2ozl_B 138 AQHS--Q---CFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIR----DNNPVVVLENELM 187 (341)
T ss_dssp GGGC--C---CCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEECHHH
T ss_pred cchh--h---HHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHh----cCCCEEEEEChhh
Confidence 2331 2 223 5666664433 344577888888888776 3799999999543
No 56
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=93.74 E-value=0.2 Score=54.23 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=84.2
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +|+.+|++-=| +..-.+..+.+|...++|+++|.-+-....+. . .
T Consensus 42 i~~i~~~~E~~---Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~----~---~ 110 (563)
T 2uz1_A 42 VPIIDTRHEAA---AGHAAEGYARAG-AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDE----T---N 110 (563)
T ss_dssp CCEEECSSHHH---HHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTT----S---C
T ss_pred CcEEeeCCHHH---HHHHHHHHHHHh-CCCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccCC----c---h
Confidence 44555444332 335788877764 56777776555 45556889999999999999998876654321 1 1
Q ss_pred CCCC-CChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKN-WNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~-~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+.. .|...+.+.+-. +..++.+++++...+++|+. ....||+.|+|..|
T Consensus 111 ~~Q~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 111 TLQAGIDQVAMAAPITK-----WAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CTTCCCCHHHHHGGGCS-----EEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hhhhhccHHHHhhhhhc-----eEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 2345 799999999876 88999999988777777664 23569999999988
No 57
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=93.63 E-value=0.17 Score=50.60 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=76.6
Q ss_pred eEEeC-cchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHH--hh---h----cCCcEEEEeCCCCCcccCCccc
Q 044559 84 NLIGC-CNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAG--AY---S----ENLPLICIVGGPNSNDYGTNRI 152 (585)
Q Consensus 84 ~~i~~-~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~--A~---~----~~~PllvI~g~~~~~~~~~~~~ 152 (585)
|++.+ ..|++++.+|.|+|.. |. .++..|.++.+.-++..|.+ |+ . .++||+++.. +.. .+.+ .
T Consensus 51 r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~--~~~~-g 125 (324)
T 1w85_B 51 RVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGG--GVHT-P 125 (324)
T ss_dssp TEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECS--SSCC-C
T ss_pred cEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccC--CCCC-C
Confidence 67764 4999999999999987 65 66656788887667777753 22 2 7999998853 211 1111 1
Q ss_pred cccccCCCChhHHHhhhcceeEE-EEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 044559 153 LHHTIGLPDFSQELRCFQTVTCY-QAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPA 213 (585)
Q Consensus 153 ~~~~~~~~~~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~~ 213 (585)
-||.. . + ..+++.+..+ .....+++++..+++.|++ .++||+|.-|..+..
T Consensus 126 ~~hs~----~-~-~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~p~~l~r 177 (324)
T 1w85_B 126 ELHSD----S-L-EGLVAQQPGLKVVIPSTPYDAKGLLISAIR----DNDPVIFLEHLKLYR 177 (324)
T ss_dssp TTSSC----C-C-HHHHTTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEEETTTSS
T ss_pred Ccccc----c-H-HHHHccCCCCEEEeeCCHHHHHHHHHHHHH----cCCCEEEEechHhcC
Confidence 22221 1 1 3667776543 3445678888888888875 579999998877743
No 58
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=93.38 E-value=0.12 Score=52.21 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=77.0
Q ss_pred eEEeC-cchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHH-h----hh----cCCcEEEEeCCCCCcccCCccc
Q 044559 84 NLIGC-CNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAG-A----YS----ENLPLICIVGGPNSNDYGTNRI 152 (585)
Q Consensus 84 ~~i~~-~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~-A----~~----~~~PllvI~g~~~~~~~~~~~~ 152 (585)
|++.+ ..|++++.+|.|+|.. |. .++..|.++++.-++..|.+ + |. .+.|++++..... . .+..
T Consensus 53 r~~~~gisE~~~~~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~---~~G~ 127 (338)
T 1qs0_B 53 RVFDAPISESGIVGTAVGMGAY-GLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-G---IYGG 127 (338)
T ss_dssp TEEECCSCHHHHHHHHHHHHHH-TCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-S---SSCC
T ss_pred cEEEccccHHHHHHHHHHHHhC-CCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-C---CCCc
Confidence 78875 7999999999999998 55 66656788888767777763 3 21 3589988763222 1 1112
Q ss_pred cccccCCCChhHHHhhhcceeEE-EEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 044559 153 LHHTIGLPDFSQELRCFQTVTCY-QAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPA 213 (585)
Q Consensus 153 ~~~~~~~~~~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~~ 213 (585)
.||.+. ...+++.+..+ .....+++++..+++.|++ .++||+|..|..+..
T Consensus 128 th~s~~------d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~----~~~Pv~i~~p~~l~r 179 (338)
T 1qs0_B 128 QTHSQS------PEAMFTQVCGLRTVMPSNPYDAKGLLIASIE----CDDPVIFLEPKRLYN 179 (338)
T ss_dssp SSSSCC------CHHHHTTSTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEEEGGGSS
T ss_pred cccccc------HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----cCCcEEEEEchHhhc
Confidence 344321 24566665332 3445678888888888876 379999998876643
No 59
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=93.16 E-value=0.27 Score=53.29 Aligned_cols=119 Identities=10% Similarity=0.055 Sum_probs=83.2
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
..+++....-.+ +.-+|.|.+.+. +++.+|++-=| +..-.+..+.+|...++|+++|.-+-....+.+
T Consensus 48 ~i~~v~~~~E~~---Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~l~~A~~~~vPll~itg~~~~~~~~~------- 116 (566)
T 1ozh_A 48 SIRIIPVRHEAN---AAFMAAAVGRIT-GKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAK------- 116 (566)
T ss_dssp SSEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTC---------
T ss_pred CCcEEEeCCHHH---HHHHHHHHHHHH-CCCEEEEEccChHHHHHHHHHHHHHhcCCCEEEEeCCCccccCCC-------
Confidence 345655544332 335778877664 57777776555 455558899999999999999988766544311
Q ss_pred CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
..+...|...+.+.+-. +..++.+++++...+++|+. ....||+.|+|..|
T Consensus 117 ~~~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 117 QVHQSMDTVAMFSPVTK-----YAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp ----CCCHHHHHGGGCS-----EEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred CcccccCHHHHHHHHhh-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 11245789999999876 88999999888777777654 23469999999987
No 60
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=92.95 E-value=0.26 Score=53.51 Aligned_cols=120 Identities=10% Similarity=0.067 Sum_probs=85.3
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++-=| +..-.+..+.+|...++|+++|.-+-....+. . ..
T Consensus 49 i~~i~~~~E~~---Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~v~~A~~~~~Pll~itg~~~~~~~~----~--~~ 118 (573)
T 2iht_A 49 IDFVLTRHEFT---AGVAADVLARIT-GRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIF----P--ND 118 (573)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHH-CSCEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEESCGGGCC----T--TT
T ss_pred CeEEeeCCHHH---HHHHHHHHHHHH-CCCEEEEEccCchHHHHHHHHHHHHhhCCCEEEEcccCcccccC----C--cC
Confidence 55665554433 335778877664 67877777555 44445889999999999999998877654431 1 01
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+..+|...+.+.+-. +..++.+++++...+++|+. ....||+.|++..|-
T Consensus 119 ~~Q~~d~~~~~~~~~k-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 119 THQCLDSVAIVAPMSK-----YAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp STTCCCHHHHHGGGSS-----EEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred ccccCCHHHHHHhHhh-----EEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 2345799999999886 88899999888777777764 234599999998763
No 61
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=92.91 E-value=0.31 Score=53.88 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=76.1
Q ss_pred eEEe-CcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCC
Q 044559 84 NLIG-CCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161 (585)
Q Consensus 84 ~~i~-~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~ 161 (585)
|++. ...|++++.+|.|+|...|. .++ .|..+.+.-+..+|..+-..+.||+++....... .+.+...||
T Consensus 403 R~id~GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~-~G~dG~tHq------ 474 (669)
T 2r8o_A 403 NYIHYGVREFGMTAIANGISLHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTHQ------ 474 (669)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTC------
T ss_pred CeeecchhHHHHHHHHHHHHHcCCCeEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcC-cCCCCCccC------
Confidence 6665 55999999999999998676 666 4676776667788888888999998886322222 232222232
Q ss_pred hhHHHhhhcceeEE-EEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 162 FSQELRCFQTVTCY-QAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 162 ~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
...++.+++.+... .+...++.++..+++.|++. ..+||+|.+|..
T Consensus 475 ~~edla~lr~iP~l~V~~Pad~~E~~~~l~~a~~~---~~~Pv~i~~~r~ 521 (669)
T 2r8o_A 475 PVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVER---QDGPTALILSRQ 521 (669)
T ss_dssp CSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHC---SSSCEEEECCSS
T ss_pred CHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHh---CCCcEEEEeCCC
Confidence 23456677666432 34445666666666655542 269999999864
No 62
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=92.68 E-value=0.79 Score=50.72 Aligned_cols=152 Identities=12% Similarity=0.169 Sum_probs=96.4
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcc
Q 044559 390 NVLFQHIQKMLSSETAVIAETGDSWFNC-QKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQV 467 (585)
Q Consensus 390 ~~~~~~l~~~l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~ 467 (585)
..+++.|.+ ..=+.++.+ -|...... ..+......+++....-.+ +.-+|.|.+.+. +++.+|++-=| +..-
T Consensus 86 ~~lv~~L~~-~GV~~vFg~-PG~~~~pl~dal~~~~~i~~v~~~hE~~---Aa~aAdGyAr~t-Gkpgvv~~TsGpG~~N 159 (677)
T 1t9b_A 86 QIFNEMMSR-QNVDTVFGY-PGGAILPVYDAIHNSDKFNFVLPKHEQG---AGHMAEGYARAS-GKPGVVLVTSGPGATN 159 (677)
T ss_dssp HHHHHHHHH-TTCCEEEEC-CCGGGHHHHHHTTTCSSSEEECCSSHHH---HHHHHHHHHHHH-SSCEEEEECSTHHHHT
T ss_pred HHHHHHHHH-cCCCEEEEe-cCccHHHHHHHHHhCCCCeEEEeCChHH---HHHHHHHHHHHH-CCCEEEEECCChHHHH
Confidence 334555544 343444433 44433221 1122222345665554333 335778877764 56777766555 4455
Q ss_pred cHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--
Q 044559 468 TAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG-- 545 (585)
Q Consensus 468 ~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~-- 545 (585)
.+..|.+|...++|+++|.-+-....+. . ..+...|...+.+.+-. +..++.+++++...+++|+.
T Consensus 160 ~~~gia~A~~d~vPllvItG~~~~~~~g----~---~a~Q~~Dq~~i~~~~tk-----~~~~v~~~~~i~~~i~~A~~~A 227 (677)
T 1t9b_A 160 VVTPMADAFADGIPMVVFTGQVPTSAIG----T---DAFQEADVVGISRSCTK-----WNVMVKSVEELPLRINEAFEIA 227 (677)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTTT----S---CCTTCCCHHHHTGGGSS-----EEEECCSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChhhcC----C---CCccccCHHHHhhhhee-----EEEEcCCHHHHHHHHHHHHHHH
Confidence 5899999999999999998876544321 1 12345788899888876 78899999999888888775
Q ss_pred -CCCCCeEEEEEEcC
Q 044559 546 -PKKDCLCFIEVLVH 559 (585)
Q Consensus 546 -~~~~gp~vIeV~v~ 559 (585)
....||++|+|..|
T Consensus 228 ~~grpGPV~l~lP~D 242 (677)
T 1t9b_A 228 TSGRPGPVLVDLPKD 242 (677)
T ss_dssp HSSSCCEEEEEEEHH
T ss_pred hhCCCceEEEEcCHH
Confidence 23468999999943
No 63
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=92.61 E-value=0.52 Score=47.11 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=76.6
Q ss_pred eEEeC-cchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHH--hh---h----cCCcEEEEeCCCCCcccCCccc
Q 044559 84 NLIGC-CNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAG--AY---S----ENLPLICIVGGPNSNDYGTNRI 152 (585)
Q Consensus 84 ~~i~~-~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~--A~---~----~~~PllvI~g~~~~~~~~~~~~ 152 (585)
|++.+ ..|++++.+|.|+|.. |. .++..|.++.+.-++..|.+ |. . .++|++++.. +... +.+ .
T Consensus 52 r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~--~~~-g 126 (324)
T 1umd_B 52 RVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGG--VRG-G 126 (324)
T ss_dssp TEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSS--SSC-G
T ss_pred cEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCC--CCC-C
Confidence 56644 9999999999999987 55 66656788887667777754 22 2 7899998764 2211 122 2
Q ss_pred cccccCCCChhHHHhhhcceeE-EEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 044559 153 LHHTIGLPDFSQELRCFQTVTC-YQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPA 213 (585)
Q Consensus 153 ~~~~~~~~~~~dq~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~~ 213 (585)
.||.. . | ..+++.+.. ......+++++..++++|++ .++||+|.-|..+..
T Consensus 127 ~~hs~----~-~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~p~~l~~ 178 (324)
T 1umd_B 127 HHHSQ----S-P-EAHFVHTAGLKVVAVSTPYDAKGLLKAAIR----DEDPVVFLEPKRLYR 178 (324)
T ss_dssp GGSSC----C-C-HHHHHTSTTCEEEECCSHHHHHHHHHHHHH----CSSCEEEEEEGGGSS
T ss_pred Cccch----h-H-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh----cCCCEEEEechHhcC
Confidence 33321 1 2 256666544 23455678888888888884 579999988877643
No 64
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=92.60 E-value=0.51 Score=51.61 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=76.5
Q ss_pred eEE-eCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCC
Q 044559 84 NLI-GCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161 (585)
Q Consensus 84 ~~i-~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~ 161 (585)
|++ ...-|++++.+|.|.|...|. .++.+ ..+-+.-+...|..+-..+.||+++....... .+.+...||.
T Consensus 383 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~-f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g-~G~dG~THq~----- 455 (632)
T 3l84_A 383 KNIHFGIREHAMAAINNAFARYGIFLPFSAT-FFIFSEYLKPAARIAALMKIKHFFIFTHDSIG-VGEDGPTHQP----- 455 (632)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGSC-----
T ss_pred CeEEeCccHHHHHHHHHHHHHcCCCEEEEEe-cHHHHHHHHHHHHHHhccCCCEEEEEECCCcC-CCCCCCCCCC-----
Confidence 455 456999999999999998676 66554 55666667778877778899999885322221 2322233432
Q ss_pred hhHHHhhhcceeEEE-EEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 162 FSQELRCFQTVTCYQ-AVVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 162 ~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
..++.+++.+.... ....++.++..+++.|++ .++||+|.+|..-
T Consensus 456 -~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~----~~~Pv~ir~~r~~ 501 (632)
T 3l84_A 456 -IEQLSTFRAMPNFLTFRPADGVENVKAWQIALN----ADIPSAFVLSRQK 501 (632)
T ss_dssp -SSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH----CSSCEEEECCSSC
T ss_pred -HhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCEEEEEcCCC
Confidence 23467777775433 334466666666666664 5799999998643
No 65
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=92.29 E-value=0.51 Score=51.41 Aligned_cols=118 Identities=10% Similarity=0.019 Sum_probs=83.6
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|.|.+.+. +|+.+|++-=| ++...+..|.+|...++|+++|.-+-....+. . .
T Consensus 44 i~~i~~~~E~---~Aa~~A~GyAr~t-gk~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg~~p~~~~g----~---~ 112 (590)
T 1v5e_A 44 VKFLQVKHEE---VGAMAAVMQSKFG-GNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELN----M---D 112 (590)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHTT-CCCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTT----T---T
T ss_pred CeEEeeCCHH---HHHHHHHHHHHHH-CCCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcCCCCcccCC----C---C
Confidence 4555544433 2446788887764 56777776555 44555899999999999999999887654321 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+...|...+.+.+-. +.+++.+++++...+++|+. ....||+.| +..|-
T Consensus 113 ~~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 113 AFQELNQNPMYDHIAV-----YNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp CTTCCCCHHHHHTTCS-----EEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred cccccCHHHHHHhhcc-----EEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 2345788999999876 78899999888877777765 234599999 98874
No 66
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=91.86 E-value=1.4 Score=48.30 Aligned_cols=152 Identities=11% Similarity=0.151 Sum_probs=93.8
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEec----CCC-ChHHHHHhhhcCCCCeEEe-CcchHHHHHHHhHHhHhcCc-cEEEEe
Q 044559 43 ESTLGRHLARRLVQIGA--TDVFSV----PGD-FNLTLLDHLIAEPGLNLIG-CCNELNAGYAADGYARSRGV-GACVVT 113 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV--~~vFg~----PG~-~~~~l~~al~~~~~i~~i~-~~~E~~A~~~A~Gyar~tg~-~v~~~t 113 (585)
.++..+++.+.|.+..- +.|+.+ +++ ....|.+.. ++ |++. ...|++++.+|.|+|.. |. .++.+
T Consensus 318 ~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~---~~-r~~~~gIaE~~~~~~a~G~A~~-G~rp~~~~- 391 (621)
T 2o1s_A 318 LPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKF---PD-RYFDVAIAEQHAVTFAAGLAIG-GYKPIVAI- 391 (621)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---TT-TEEECCSCHHHHHHHHHHHHHT-TCEEEEEE-
T ss_pred hHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhC---CC-ceEecCcCHHHHHHHHHHHHHC-CCEEEEEe-
Confidence 45777777766655432 334443 443 333444433 33 6776 56999999999999986 65 55554
Q ss_pred CChhhHHHHHHH-HHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEE-EEEeCChhhHHHHHHH
Q 044559 114 FTVGGLSVLNAI-AGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QAVVNNLEDAHELIDT 191 (585)
Q Consensus 114 sGpG~~n~~~~l-~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~ 191 (585)
.++.+.-++--+ ..+...++|++++...... .+.+...|+. . .+..+++.+..+ .....++.++..++..
T Consensus 392 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~~G~tH~~-----~-~d~~~~~~iP~l~v~~P~d~~e~~~~l~~ 463 (621)
T 2o1s_A 392 YSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGI--VGADGQTHQG-----A-FDLSYLRCIPEMVIMTPSDENECRQMLYT 463 (621)
T ss_dssp ETTGGGGGHHHHHHTTTTTTCCCEEEEESCBC--CCTTCGGGCB-----C-SHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCCCCCccCc-----h-HHHHHHhcCCCCEEEecCCHHHHHHHHHH
Confidence 777766555443 4467789998888743222 2322223432 1 235667766433 3445577788788777
Q ss_pred HHHHhhhcCCcEEEEecCCC
Q 044559 192 AVSTALKESKPVYISVACNL 211 (585)
Q Consensus 192 A~~~a~~~~GPV~i~iP~dv 211 (585)
|++.+ ++||+|..|...
T Consensus 464 a~~~~---~~Pv~i~~~r~~ 480 (621)
T 2o1s_A 464 GYHYN---DGPSAVRYPRGN 480 (621)
T ss_dssp HHHCC---SSCEEEECCSSB
T ss_pred HHHcC---CCCEEEEeCCCC
Confidence 77543 799999999654
No 67
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=91.79 E-value=0.38 Score=49.01 Aligned_cols=116 Identities=17% Similarity=0.059 Sum_probs=71.2
Q ss_pred CeEEeC-cchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHH-hhhc--------CCcEEEEeCCCCCcccCCcc
Q 044559 83 LNLIGC-CNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAG-AYSE--------NLPLICIVGGPNSNDYGTNR 151 (585)
Q Consensus 83 i~~i~~-~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~-A~~~--------~~PllvI~g~~~~~~~~~~~ 151 (585)
-|++.+ ..|++++.+|.|+|.. |. .++..|.++.+.-++..|.. +... ++||+++...... .+ +.
T Consensus 98 ~r~~d~gIaE~~~v~~a~G~A~~-G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~--~g-~g 173 (369)
T 1ik6_A 98 ERVIDTPLNEGGILGFAMGMAMA-GLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSG--TR-GG 173 (369)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC--------
T ss_pred CcEEECcccHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCC--CC-CC
Confidence 367764 4999999999999987 55 76666788877656676654 3222 8998877643221 12 21
Q ss_pred ccccccCCCChhHHHhhhcceeEEE-EEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 044559 152 ILHHTIGLPDFSQELRCFQTVTCYQ-AVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPA 213 (585)
Q Consensus 152 ~~~~~~~~~~~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~~ 213 (585)
-||. ..+ ..+++.+..+. ....+++++..+++.|++ .++||+|..|..+..
T Consensus 174 -~~hs-----~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~----~~~Pv~i~~p~~l~r 225 (369)
T 1ik6_A 174 -LYHS-----NSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR----GDDPVVFLEPKILYR 225 (369)
T ss_dssp ------------H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEEEGGGSS
T ss_pred -cccc-----ccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh----CCCCEEEEEehhhhc
Confidence 2221 112 46677765433 444577888888888775 479999998877643
No 68
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=91.68 E-value=0.62 Score=51.31 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=75.3
Q ss_pred CeEEeC-cchHHHHHHHhHHhHhcCccEEEEeCChhhHHHHHHHHHhhhcCCcEEEEe-CCCCCcccCCccccccccCCC
Q 044559 83 LNLIGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIV-GGPNSNDYGTNRILHHTIGLP 160 (585)
Q Consensus 83 i~~i~~-~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~-g~~~~~~~~~~~~~~~~~~~~ 160 (585)
=|++.+ ..|++++.+|.|+|...|.=.++.|+.+...=+..+|..+-..+.|++++. .+.-. .+.+...||
T Consensus 397 ~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g--~G~dG~tHq----- 469 (651)
T 2e6k_A 397 GRYLHFGVREHAMGAILNGLNLHGGYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIA--LGEDGPTHQ----- 469 (651)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTC-----
T ss_pred CceEecCcCHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--cCCCcCccc-----
Confidence 367765 599999999999998764533334556666556677877888899998884 33221 232222332
Q ss_pred ChhHHHhhhcceeEE-EEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 161 DFSQELRCFQTVTCY-QAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 161 ~~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
...++.+++.+..+ .+...++.++..++..|++.. .+||+|.+|..
T Consensus 470 -~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~---~~Pv~i~~~r~ 516 (651)
T 2e6k_A 470 -PVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRK---EGPTALVLTRQ 516 (651)
T ss_dssp -CSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCC---SSCEEEECCSS
T ss_pred -cHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcC---CCCEEEEEeCC
Confidence 23456777776432 344456677777776666532 69999999864
No 69
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=91.51 E-value=0.95 Score=49.78 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=73.7
Q ss_pred eEEeC-cchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCC
Q 044559 84 NLIGC-CNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161 (585)
Q Consensus 84 ~~i~~-~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~ 161 (585)
|++.+ .-|++++.+|.|+|...|. .++. |..+-+.-+...|..+-..+.||+++....... .+.+..-||
T Consensus 404 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~THq------ 475 (663)
T 3kom_A 404 NYLSYGVREFGMAAIMNGLSLYGGIKPYGG-TFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIG-LGEDGPTHQ------ 475 (663)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTC------
T ss_pred CeEecCccHHHHHHHHHHHHHcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc-cCCCCCCcC------
Confidence 67754 8999999999999987676 6655 466776667778877778999999884222211 232222332
Q ss_pred hhHHHhhhcceeEEE-EEeCChhhHHHHHHHHHHHhhh-cCCcEEEEecC
Q 044559 162 FSQELRCFQTVTCYQ-AVVNNLEDAHELIDTAVSTALK-ESKPVYISVAC 209 (585)
Q Consensus 162 ~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~-~~GPV~i~iP~ 209 (585)
...++.+++.+.... ....++.++..+ ++.|.. .++||+|.+|.
T Consensus 476 ~~ed~a~lr~iPnl~V~~Pad~~e~~~~----l~~A~~~~~~Pv~ir~~r 521 (663)
T 3kom_A 476 PIEHVPSLRLIPNLSVWRPADTIETMIA----WKEAVKSKDTPSVMVLTR 521 (663)
T ss_dssp CSSHHHHHHTSTTCEEECCCSHHHHHHH----HHHHHHCSSCCEEEECCS
T ss_pred CHHHHHHHhcCCCcEEEeeCCHHHHHHH----HHHHHHhCCCCEEEEccC
Confidence 223467777765432 333445555444 445555 48999999885
No 70
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=91.34 E-value=0.37 Score=52.17 Aligned_cols=120 Identities=11% Similarity=0.023 Sum_probs=83.1
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++-=| +..-.+..+.+|...++|+++|.-+-....+. ...+
T Consensus 46 i~~i~~~hE~~---Aa~~A~Gyar~t-g~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~~~~~~~~--~~~~--- 116 (564)
T 2q28_A 46 IRYIGFRHEQS---AGYAAAASGFLT-QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVD--LQQG--- 116 (564)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHH--TTSC---
T ss_pred CcEEeeCCHHH---HHHHHHHHHHHh-CCCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCCCCccccC--CCCC---
Confidence 44555444332 235677777664 57777777555 34445889999999999999999876543221 0011
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+..+|...+.+.+-. +..++.+++++...+++|+. ....||+.|+|..|
T Consensus 117 ~~Q~~dq~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 117 DYEELDQMNAAKPYAK-----AAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp CTTCCCHHHHHGGGSS-----EEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred ccccccHHHHHHHhhh-----eeeecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 2345788899998876 88899998888777777765 23569999999988
No 71
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=91.23 E-value=0.51 Score=51.35 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=71.6
Q ss_pred hHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhc
Q 044559 441 VGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH 519 (585)
Q Consensus 441 lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 519 (585)
.-+|.|.+.+. +++.+|++-=| +..-.+..+.+|...++|+++|.-+-....+.+ +. .+...|... .+.+-
T Consensus 56 a~~A~GyAr~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~----~~--~~Q~~d~~~-~~~~t 127 (589)
T 2pgn_A 56 AWMVNGYNYVK-DRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGR----SE--AAQQVPWQS-FTPIA 127 (589)
T ss_dssp HHHHHHHHHHH-TSCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEEESCGGGTTC----TT--CSSCCCGGG-GTTTS
T ss_pred HHHHHHHHHHH-CCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEecCCcccccCC----CC--cccccChhh-ccccE
Confidence 35677877664 56666555444 445558899999999999999988766543311 10 223456555 55554
Q ss_pred CCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 520 NGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 520 ~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
. +..++.+++++...+++|+. ....||+.|+|..|
T Consensus 128 k-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 128 R-----STQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp S-----EEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred E-----EEeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 4 78889998888777777764 23459999999877
No 72
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=91.21 E-value=0.33 Score=52.37 Aligned_cols=118 Identities=8% Similarity=-0.052 Sum_probs=80.6
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++-=| +..-.+..+.+|...++|+++|.-+-....+. . .
T Consensus 42 i~~i~~~~E~~---Aa~~A~GyAr~t-g~~~v~~~TsGpG~~N~~~gi~~A~~~~vPvl~itg~~~~~~~~----~---~ 110 (549)
T 3eya_A 42 IEWMSTRHEEV---AAFAAGAEAQLS-GELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIG----S---G 110 (549)
T ss_dssp SEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEESCGGGTT----S---C
T ss_pred CeEEEeCChHH---HHHHHHHHHHHh-CCCEEEEeCCCCcHhhhHHHHHHHHhhCCCEEEEeCCCchhhcC----C---C
Confidence 44555444332 335677877664 56777776555 44455789999999999999998765533221 1 1
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~ 559 (585)
.+...|...+.+.+-. +..++.+++++...+++|+. ....||+.|+|..|
T Consensus 111 ~~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 111 YFQETHPQELFRECSH-----YCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp CTTCCCHHHHTSTTCS-----EEEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred CCCccCHHHHHhhhhh-----eEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 2345788888877765 78889999888777777764 22569999999865
No 73
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=90.93 E-value=0.37 Score=52.20 Aligned_cols=120 Identities=6% Similarity=-0.033 Sum_probs=82.6
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++-=| +..-.+..+.+|...++|+++|.-+-....+.. ..+
T Consensus 48 i~~i~~~~E~~---Aa~~A~GyAr~t-g~pgv~~~TsGpG~~N~~~~i~~A~~~~vPll~itg~~~~~~~~~--~~~--- 118 (568)
T 2c31_A 48 QRFYSFRHEQH---AGYAASIAGYIE-GKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDL--QQG--- 118 (568)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHT--TCC---
T ss_pred CcEEEeCcHHH---HHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEccCCCccccCC--CCC---
Confidence 45555544333 235677776664 57777776555 444458899999999999999998765432210 011
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+..+|...+.+.+-. ...++.+++++...+++|+. ....||+.|+|..|
T Consensus 119 ~~Q~~dq~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 119 DYEEMDQMNVARPHCK-----ASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp CTTCCCHHHHSGGGSS-----EEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred cccccCHHHHHHhhhh-----eeeecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 2345788888888876 78889998888777777765 23569999999988
No 74
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=90.78 E-value=0.26 Score=52.91 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=79.9
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
..+++....-.+ +.-+|.|.+.+. +++.+|++-=| +..-.+..|.+|...++|+++|.-+-....+. .+.
T Consensus 38 ~i~~i~~~~E~~---Aa~~A~Gyar~t-g~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~----~~~- 108 (528)
T 1q6z_A 38 DFRYILALQEAC---VVGIADGYAQAS-RKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIG----VEA- 108 (528)
T ss_dssp TCEEEECSSHHH---HHHHHHHHHHHH-TSCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHT----TTC-
T ss_pred cCcEEEECcHHH---HHHHHHHHHHHh-CCCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCcccccC----CCc-
Confidence 355665554332 346788887764 56777655443 44455889999999999999998876544321 111
Q ss_pred CCCCC-CChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 504 NVIKN-WNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 504 ~~~~~-~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
+.. +|...+.+.+-. +..++.+++++...+++|+. ....||+.|+|..|-
T Consensus 109 --~q~~~d~~~~~~~~~k-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 109 --LLTNVDAANLPRPLVK-----WSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp --TTCCTTGGGSSTTSCS-----CEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred --ccccccHHHHHHHhhH-----hhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 123 577777776654 67788888877766666654 345689999999885
No 75
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=90.71 E-value=0.81 Score=50.16 Aligned_cols=151 Identities=11% Similarity=0.128 Sum_probs=94.3
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEec----CCC-ChHHHHHhhhcCCCCeEEe-CcchHHHHHHHhHHhHhcCc-cEEEEe
Q 044559 43 ESTLGRHLARRLVQIGA--TDVFSV----PGD-FNLTLLDHLIAEPGLNLIG-CCNELNAGYAADGYARSRGV-GACVVT 113 (585)
Q Consensus 43 ~~~~a~~i~~~L~~~GV--~~vFg~----PG~-~~~~l~~al~~~~~i~~i~-~~~E~~A~~~A~Gyar~tg~-~v~~~t 113 (585)
.++..+++.+.|.+..- +.|+.+ +++ ....|.+.. ++ |++. ...|++++.+|.|.|.. |. .++.+
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~---~~-r~~~~gIaE~~~~~~a~G~A~~-G~rp~~~~- 394 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVH---PH-RYLDVGIAEEVAVTTAAGMALQ-GMRPVVAI- 394 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---GG-GEEECCSCHHHHHHHHHHHHHT-TCEEEEEE-
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhc---Cc-ceEeccccHHHHHHHHHHHHHc-CCEEEEEe-
Confidence 46777777766655432 335544 443 334444433 22 6776 55999999999999987 65 55554
Q ss_pred CChhhHHHHHHH-HHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEE-EEeCChhhHHHHHHH
Q 044559 114 FTVGGLSVLNAI-AGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQ-AVVNNLEDAHELIDT 191 (585)
Q Consensus 114 sGpG~~n~~~~l-~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~ 191 (585)
..+.+.-++--+ ..+...+.|++++...... .+.+...|+. ..+..+++.+..+. ....++.++..++..
T Consensus 395 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~dG~tH~~------~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~ 466 (629)
T 2o1x_A 395 YSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGI--VGADGATHNG------VFDLSFLRSIPGVRIGLPKDAAELRGMLKY 466 (629)
T ss_dssp EHHHHGGGHHHHHHTTTTTTCCCEEEEESBBC--CCTTCTTTCB------CSHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEECCcc--CCCCCcccCc------cHHHHHHHccCCcEEEecCCHHHHHHHHHH
Confidence 667665555444 4467789999888743222 2322123332 23467777775433 444577788888887
Q ss_pred HHHHhhhcCCcEEEEecCCC
Q 044559 192 AVSTALKESKPVYISVACNL 211 (585)
Q Consensus 192 A~~~a~~~~GPV~i~iP~dv 211 (585)
|++. ++||+|.+|...
T Consensus 467 a~~~----~~Pv~i~~~r~~ 482 (629)
T 2o1x_A 467 AQTH----DGPFAIRYPRGN 482 (629)
T ss_dssp HHHS----SSCEEEECCSSB
T ss_pred HHhC----CCCEEEEecCCC
Confidence 7764 799999999654
No 76
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=90.61 E-value=0.41 Score=52.35 Aligned_cols=119 Identities=16% Similarity=0.083 Sum_probs=79.3
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccch-hcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGS-FQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGs-f~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +|+.+|++-=|. ..-.+..+.+|...++|+++|.-+-....+. .+
T Consensus 70 i~~i~~~hE~~---Aa~aA~GyAr~t-gkpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~~~~~~~g----~~--- 138 (604)
T 2x7j_A 70 ISVHVQIDERS---AGFFALGLAKAK-QRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELRE----VG--- 138 (604)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHH-TSCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGSS----SC---
T ss_pred ceEEEecChHH---HHHHHHHHHHhh-CCCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhC----CC---
Confidence 44554444322 335677877664 678777775553 4455889999999999999998876544321 11
Q ss_pred CCCCCChHHHHHHhcCCCCCceeEEEcCHHH-------HHHHHHhhcC---CCCCCeEEEEEEcCC
Q 044559 505 VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEE-------LIEAIENATG---PKKDCLCFIEVLVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~V~~~~e-------L~~aL~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+...|...+.+.+-. +..++.++++ +...+++|+. ....||+.|+|..|-
T Consensus 139 ~~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 139 APQAINQHFLFGNFVK-----FFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp CTTCCCCTTTTGGGSS-----CEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred CCCcCcHHHHhhhhee-----eeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 1234677777777765 7888887775 6666666554 235799999999884
No 77
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=90.59 E-value=0.64 Score=47.29 Aligned_cols=113 Identities=17% Similarity=0.073 Sum_probs=68.9
Q ss_pred HHHHHhHHhHhc---Cc-cEEEEeCChhhHHH---HHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHH
Q 044559 94 AGYAADGYARSR---GV-GACVVTFTVGGLSV---LNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQEL 166 (585)
Q Consensus 94 A~~~A~Gyar~t---g~-~v~~~tsGpG~~n~---~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~ 166 (585)
..-+|.|.|++. |. .++++..|=|+.+. .-++..|..-+.|+|+|.-+.... .... ...... ..+..
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~g-i~~~--~~~~~~---~~d~~ 220 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFA-ISTP--VEKQTV---AKTLA 220 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEE--GGGTCS---CSCSG
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCcc-ceec--cccccC---CCCHH
Confidence 444666766553 33 45555567776662 236667888999999998655322 1110 001111 11223
Q ss_pred hhhcceeEEEEEeC--ChhhHHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 044559 167 RCFQTVTCYQAVVN--NLEDAHELIDTAVSTALKESKPVYISVACNLP 212 (585)
Q Consensus 167 ~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv~ 212 (585)
++++.+--...+|+ +++++...+++|+..+....||+.|++-..-.
T Consensus 221 ~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~ 268 (368)
T 1w85_A 221 QKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRY 268 (368)
T ss_dssp GGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCS
T ss_pred HHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecc
Confidence 45555433334554 78889999999998888788999999987653
No 78
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=90.28 E-value=0.28 Score=53.66 Aligned_cols=119 Identities=9% Similarity=0.036 Sum_probs=80.5
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
..+++....-.+ +.-+|.|.+.+. +++.+|++-=| +....+..+.+|...++|+++|.-+-....+. .
T Consensus 50 ~i~~i~~~hE~~---Aa~aA~GyAr~t-g~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG~~~~~~~~-------~ 118 (603)
T 4feg_A 50 RIHYIQVRHEEV---GAMAAAADAKLT-GKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMN-------M 118 (603)
T ss_dssp TSEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTTT-------S
T ss_pred CCeEEEecChHH---HHHHHHHHHHHh-CCceEEEecCCchHHHHHHHHHHHHHcCCCEEEEecCCcccccC-------C
Confidence 355665554332 335677877664 56777776555 44555889999999999999999865543221 1
Q ss_pred CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcC
Q 044559 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVH 559 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~ 559 (585)
..+...|...+.+.+-. +..++.+++++...+++|+. ....||+.|+|..|
T Consensus 119 ~~~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 171 (603)
T 4feg_A 119 DTFQEMNENPIYADVAD-----YNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVD 171 (603)
T ss_dssp CCTTCCCCGGGGTTTCS-----EEEECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETT
T ss_pred CccccccHHHHhhhhce-----EEEEcCCHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 12244677777777765 78889888887776666654 12579999999876
No 79
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=90.13 E-value=0.44 Score=51.62 Aligned_cols=108 Identities=10% Similarity=0.005 Sum_probs=70.9
Q ss_pred HHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc--CCCCCCC-hHHHHHH
Q 044559 442 GATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY--NVIKNWN-YTGLVDA 517 (585)
Q Consensus 442 paAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~--~~~~~~d-~~~la~a 517 (585)
-+|.|.+.+. +|+.+|++-=| +..-.+..+.+|...++|+++|.-+-....+. .+.+ .....+| ...+.+.
T Consensus 73 ~~A~GyAr~t-gkp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~----~~~~~~~~~q~~d~q~~~~~~ 147 (565)
T 2nxw_A 73 FAADAAARYS-STLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGN----AGLLLHHQGRTLDTQFQVFKE 147 (565)
T ss_dssp HHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC------CCCC-------CHHHHHHTT
T ss_pred HHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhhc----cCcceeeeccchhhHHHHHHh
Confidence 5677877664 56777776544 44555889999999999999999885443321 1111 1112356 6777777
Q ss_pred hcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcC
Q 044559 518 IHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVH 559 (585)
Q Consensus 518 ~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~ 559 (585)
+-. +..++.+++++...+++|+. ....||+.|+|..|
T Consensus 148 ~~k-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 186 (565)
T 2nxw_A 148 ITV-----AQARLDDPAKAPAEIARVLGAARAQSRPVYLEIPRN 186 (565)
T ss_dssp SCS-----CEEECCCTTTHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred hhe-----EEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEECChh
Confidence 765 78889888877666666654 11469999999955
No 80
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=89.88 E-value=1.2 Score=49.23 Aligned_cols=115 Identities=15% Similarity=0.093 Sum_probs=73.9
Q ss_pred eEEeC-cchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCC
Q 044559 84 NLIGC-CNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161 (585)
Q Consensus 84 ~~i~~-~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~ 161 (585)
|++.+ ..|++++.+|.|.|...|. .++.+ ..+=..-+...|-.+-..+.||+++....... .+.+..-||
T Consensus 449 R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~-f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~g-vG~dG~THq------ 520 (711)
T 3uk1_A 449 NHINYGVREFGMSAAINGLVLHGGYKPFGGT-FLTFSDYSRNALRVAALMKVPSIFVFTHDSIG-LGEDGPTHQ------ 520 (711)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTC------
T ss_pred cEEEeCccHHHHHHHHHHHHHcCCCEEEEEE-hHHHHHHHHHHHHHhhhcCCCEEEEEECCCcC-cCCCCCccC------
Confidence 56644 7899999999999986676 66653 44444445667766667899998876322221 222222332
Q ss_pred hhHHHhhhcceeEE-EEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 162 FSQELRCFQTVTCY-QAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 162 ~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
...++.+++.+... .....++.++..+++.|++ ..+||+|.+|..
T Consensus 521 ~~ed~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~----~~~Pv~ir~~r~ 566 (711)
T 3uk1_A 521 SVEHVASLRLIPNLDVWRPADTVETAVAWTYAVA----HQHPSCLIFSRQ 566 (711)
T ss_dssp CSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEECCSS
T ss_pred ChhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----cCCCEEEEeeCC
Confidence 23457788877543 3344566677777766665 579999998853
No 81
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=89.79 E-value=0.93 Score=50.04 Aligned_cols=116 Identities=12% Similarity=0.050 Sum_probs=74.5
Q ss_pred eEEe-CcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCC
Q 044559 84 NLIG-CCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161 (585)
Q Consensus 84 ~~i~-~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~ 161 (585)
|++. ...|++++.+|.|+|...|. .++.+ ..+-..-+..+|..+-..+.|++++....... .+.+..-||
T Consensus 403 R~id~GIaE~~~~~~a~GlA~~GG~~P~~~~-~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g-~G~dG~tHq------ 474 (673)
T 1r9j_A 403 RYIRFGVREHAMCAILNGLDAHDGIIPFGGT-FLNFIGYALGAVRLAAISHHRVIYVATHDSIG-VGEDGPTHQ------ 474 (673)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTC------
T ss_pred CeEecCccHHHHHHHHHHHHhcCCCEEEEEe-hHHHHHHHHHHHHHHHhcCCCEEEEEECCccC-cCCCCcccC------
Confidence 6665 58999999999999987665 66554 55555566778888888999988885221111 232222232
Q ss_pred hhHHHhhhcceeE-EEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 162 FSQELRCFQTVTC-YQAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 162 ~~dq~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
...++.+++.+.. ..+...++.++..+++.|++. ..+||+|.+|..
T Consensus 475 ~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~---~~~Pv~i~~~r~ 521 (673)
T 1r9j_A 475 PVELVAALRAMPNLQVIRPSDQTETSGAWAVALSS---IHTPTVLCLSRQ 521 (673)
T ss_dssp CSSHHHHHHHSTTCEEECCSSHHHHHHHHHHHHHC---TTCCEEEECCSS
T ss_pred CHHHHHHHcCCCCCEEEeCCCHHHHHHHHHHHHHh---CCCeEEEEEcCC
Confidence 2345677776533 234445666666666655542 269999999854
No 82
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=89.77 E-value=1.1 Score=49.40 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=74.2
Q ss_pred eEEe-CcchHHHHHHHhHHhHhc-Cc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCC
Q 044559 84 NLIG-CCNELNAGYAADGYARSR-GV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160 (585)
Q Consensus 84 ~~i~-~~~E~~A~~~A~Gyar~t-g~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~ 160 (585)
|++. ...|++++.+|.|+|... |. .++. |..+...-+..+|..+-..+.|++++....... .+.+..-||
T Consensus 415 R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~-t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~tHq----- 487 (675)
T 1itz_A 415 RNVRFGVREHGMGAICNGIALHSPGFVPYCA-TFFVFTDYMRGAMRISALSEAGVIYVMTHDSIG-LGEDGPTHQ----- 487 (675)
T ss_dssp CBCCCCSCHHHHHHHHHHHHTTCTTCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTC-----
T ss_pred CeEeecccHHHHHHHHHHHHhcCCCCEEEEE-EHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-cCCCCCCcC-----
Confidence 5665 459999999999999775 35 5555 466776667788888888999988886321111 222212232
Q ss_pred ChhHHHhhhcceeEE-EEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 161 DFSQELRCFQTVTCY-QAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 161 ~~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
...++.+++.+... .+...++.++..+++.|++. ..+||+|.+|..
T Consensus 488 -~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~---~~~Pv~i~~~r~ 534 (675)
T 1itz_A 488 -PIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLN---RKRPSILALSRQ 534 (675)
T ss_dssp -CSSHHHHHHSSSSCEEECCCSHHHHHHHHHHHHHC---TTSCEEEEECSS
T ss_pred -cHHHHHHhccCCCeEEEECCCHHHHHHHHHHHHHh---CCCcEEEEecCC
Confidence 23456777766432 33445666666666555542 279999999964
No 83
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=89.71 E-value=0.5 Score=51.18 Aligned_cols=124 Identities=6% Similarity=-0.030 Sum_probs=78.2
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeee--ecCCC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVE--IHDGP 502 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~--~~~~~ 502 (585)
.+++....-.+ +.-+|.|.+.+.. +.+|++-=| +..-.++.+.+|...++|+++|.-+-....+.+. ++..
T Consensus 42 i~~v~~~~E~~---Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~- 115 (566)
T 2vbi_A 42 MKQIYCCNELN---CGFSAEGYARSNG--AAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHT- 115 (566)
T ss_dssp SEEEECSSHHH---HHHHHHHHHHHHS--CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTS-
T ss_pred CeEEeeCcHHH---HHHHHHHHHhhcC--CeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCCChHHhccCceeeee-
Confidence 44555444332 3357788777654 666665444 3444588999999999999999988765443110 0000
Q ss_pred cCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 503 YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 503 ~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
...-.-.|...+.+.+-. +..++.+++++...+++|+. ....||+.|+|..|-
T Consensus 116 ~g~~~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d~ 170 (566)
T 2vbi_A 116 IGKTDYSYQLEMARQVTC-----AAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNI 170 (566)
T ss_dssp CSSSCCTHHHHHHHTTCS-----EEEEECSSSSHHHHHHHHHHHHHHHTCCEEEEEETTT
T ss_pred ccCcchHHHHHHHhhhEe-----EEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 000011367888888866 78889888776666665553 113499999999875
No 84
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=89.60 E-value=0.54 Score=50.78 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=74.5
Q ss_pred HHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcC
Q 044559 442 GATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHN 520 (585)
Q Consensus 442 paAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~ 520 (585)
-+|.|.+.+. +++.+|++-=| +..-.+..+.+|...++|+++|.-+-....+. .+ .+..+|...+.+.+-.
T Consensus 60 ~~AdGyAr~t-G~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~~~~~~g----~~---~~Q~~d~~~~~~~~tk 131 (556)
T 3hww_A 60 HLALGLAKVS-KQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELID----CG---ANQAIRQPGMFASHPT 131 (556)
T ss_dssp HHHHHHHHHH-CSCEEEEECSSHHHHTTHHHHHHHHHHCCCEEEEEEECCGGGSS----SS---CTTCCCCTTTTTTCSS
T ss_pred HHHHHHHHhh-CCCEEEEECCCcHHHhhhHHHHHHHHhCCCeEEEeCCCCHHHhc----cC---CCccccHHHHHhhhee
Confidence 5677877664 56777776555 45555889999999999999999876644331 11 1234677777776655
Q ss_pred CCCCceeEEEcCHH------HHHHHHHhhcCCCCCCeEEEEEEcC
Q 044559 521 GEGKCWTTKVFCEE------ELIEAIENATGPKKDCLCFIEVLVH 559 (585)
Q Consensus 521 ~~~~~~~~~V~~~~------eL~~aL~~a~~~~~~gp~vIeV~v~ 559 (585)
+.+++.+++ ++..++++|+.....||+.|+|..|
T Consensus 132 -----~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~iP~d 171 (556)
T 3hww_A 132 -----HSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFA 171 (556)
T ss_dssp -----EEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEEECC
T ss_pred -----EEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeCCcC
Confidence 677787664 4888999987423569999999986
No 85
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=88.83 E-value=1.1 Score=49.66 Aligned_cols=116 Identities=13% Similarity=0.079 Sum_probs=73.8
Q ss_pred eEEe-CcchHHHHHHHhHHhHhcC-c-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCC
Q 044559 84 NLIG-CCNELNAGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160 (585)
Q Consensus 84 ~~i~-~~~E~~A~~~A~Gyar~tg-~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~ 160 (585)
|++. ...|++++.+|.|+|...| + .++ .|..+-..-+..+|..+-..+.||+++....... .+.+..-||
T Consensus 410 R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~-~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g-~G~dG~tHq----- 482 (680)
T 1gpu_A 410 RYIRYGIREHAMGAIMNGISAFGANYKPYG-GTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIG-VGEDGPTHQ----- 482 (680)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHCTTCEEEE-EEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTC-----
T ss_pred ceecCCccHHHHHHHHHHHHhcCCCceEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc-cCCCCCccC-----
Confidence 5554 6789999999999998864 5 555 5666665556777877778899998885222111 232222232
Q ss_pred ChhHHHhhhcceeEE-EEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 161 DFSQELRCFQTVTCY-QAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 161 ~~~dq~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
...++.+++.+... .+...++.++..+++.|++. ..+||+|.+|..
T Consensus 483 -~~edla~lr~iP~l~V~~Pad~~e~~~~l~~A~~~---~~~Pv~i~~~r~ 529 (680)
T 1gpu_A 483 -PIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLES---KHTPSIIALSRQ 529 (680)
T ss_dssp -CSSHHHHHHTSSSCEEECCCSHHHHHHHHHHHHHC---SSCCEEEECCSS
T ss_pred -CHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHh---CCCcEEEEecCC
Confidence 23457778776442 33344566666666555542 279999999864
No 86
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=88.82 E-value=0.57 Score=50.68 Aligned_cols=123 Identities=8% Similarity=-0.067 Sum_probs=73.6
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceee--eeecCCC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIE--VEIHDGP 502 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~--~~~~~~~ 502 (585)
.+++....-.+ +.-+|.|.+.+.. +.+|++-=| +....++.+.+|...++|+++|.-+-...... ..+|...
T Consensus 43 i~~v~~~~E~~---Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~ 117 (563)
T 2vk8_A 43 MRWAGNANELN---AAYAADGYARIKG--MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTL 117 (563)
T ss_dssp CEECCCSSHHH---HHHHHHHHHHHHS--CEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSC
T ss_pred ceEEccCchHH---HHHHHHHHHHhhC--CcEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEECCCChHHhhccccccccc
Confidence 44554444332 3356778776653 555555433 34445889999999999999999876544321 0111100
Q ss_pred cC-CCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 503 YN-VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 503 ~~-~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.. .+. |+..+.+.+-. +..++.+++++...+++|+. ....||+.|+|..|-
T Consensus 118 g~~~~q--~~~~~~~~~~k-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d~ 171 (563)
T 2vk8_A 118 GNGDFT--VFHRMSANISE-----TTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANL 171 (563)
T ss_dssp SSSCSS--HHHHHHHTTCS-----EEEECCCTTTHHHHHHHHHHHHHHHTSCEEEEEETTG
T ss_pred CCcchH--HHHHHhhhhEE-----EEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 01 111 56777777765 78889886655554444443 113599999999874
No 87
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=87.74 E-value=0.91 Score=49.10 Aligned_cols=124 Identities=9% Similarity=0.044 Sum_probs=78.1
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeee--ecCCC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVE--IHDGP 502 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~--~~~~~ 502 (585)
.+++....-.+ +.-+|.|.+.+.. +.++++-=| +....++.+.+|...++|+++|.-+-......+. .+..
T Consensus 42 i~~i~~~~E~~---Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~- 115 (568)
T 2wvg_A 42 MEQVYCCNELN---CGFSAEGYARAKG--AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHA- 115 (568)
T ss_dssp SEEEECSSHHH---HHHHHHHHHHHHS--CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTS-
T ss_pred ceEeccCcHHH---HHHHHHHHHHhhC--CeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeee-
Confidence 44555444332 3357778776653 666666444 3444578899999999999999988765543110 0000
Q ss_pred cCCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcCC
Q 044559 503 YNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVHK 560 (585)
Q Consensus 503 ~~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~~ 560 (585)
...-.-.|...+.+.+-. +..++.+++++...+++|+. ....||+.|+|..|-
T Consensus 116 ~g~~~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv 170 (568)
T 2wvg_A 116 LGKTDYHYQLEMAKNITA-----AAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 170 (568)
T ss_dssp CSSSCCCHHHHHHTTSCS-----CEEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred ccccchHHHHHHHHhhEe-----EEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence 000011367777777765 78899998877666666554 113499999999875
No 88
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=87.57 E-value=0.71 Score=50.09 Aligned_cols=118 Identities=11% Similarity=-0.044 Sum_probs=76.0
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
..+++....-.+- .-+|.|.+.+. +++.+|++==| +..-.+..+.+|...++|+++|.-+-....+. .
T Consensus 49 ~i~~i~~~hE~~A---a~aAdGyAr~t-G~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~p~~~~g----~--- 117 (578)
T 3lq1_A 49 ILKIYVDVDERSA---GFFALGLAKAS-KRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRN----V--- 117 (578)
T ss_dssp SCEEEECSSHHHH---HHHHHHHHHHH-CCCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGGTT----S---
T ss_pred CceEEEecCcHHH---HHHHHHHHHhh-CCCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHhhc----C---
Confidence 3445554443332 34778877764 56777776444 44555789999999999999999764332110 1
Q ss_pred CCCCCCChHHHHHHhcCCCCCceeEEEcCHHH-----------HHHHHHhhcCCCCCCeEEEEEEcC
Q 044559 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEE-----------LIEAIENATGPKKDCLCFIEVLVH 559 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~e-----------L~~aL~~a~~~~~~gp~vIeV~v~ 559 (585)
..+..+|...+.+.+-- +..++.++++ +.+|+..|.. ...||+.|+|..|
T Consensus 118 ~~~Qe~d~~~~~~~~tk-----~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~-gr~GPV~l~iP~d 178 (578)
T 3lq1_A 118 GAPQAMDQLHLYGSHVK-----DFTDMALPENSEEMLRYAKWHGSRAVDIAMK-TPRGPVHLNFPLR 178 (578)
T ss_dssp SCTTCCCCTTTTGGGSS-----EEEECCCCCCSHHHHHHHHHHHHHHHHHHHS-SSCCCEEEEEECC
T ss_pred CCCCCcCHhhHHhhhee-----eEeecCCCCCchHHHHHHHHHHHHHHHHhhC-CCCCcEEEECccC
Confidence 12244677777777765 7778876654 4455555542 3579999999986
No 89
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=86.73 E-value=2 Score=44.17 Aligned_cols=110 Identities=15% Similarity=0.030 Sum_probs=64.7
Q ss_pred HHHHhHHhHhc---Cc-cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHh
Q 044559 95 GYAADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR 167 (585)
Q Consensus 95 ~~~A~Gyar~t---g~-~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~ 167 (585)
.-+|.|.|.+. +. .++++..|=|.++ ..-++.-|..-+.|+|+|.-+.... .... ...... ..+..+
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~-i~~~--~~~~~~---~~d~~~ 241 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYA-ISTP--TSEQYR---GDGIAA 241 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEE--GGGTCS---SSTTGG
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCcee-eeec--ccccCC---CCCHHH
Confidence 34556666543 22 4444445655554 2356777777889999998654322 1110 000111 113345
Q ss_pred hhcceeEEEEEeC--ChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 168 CFQTVTCYQAVVN--NLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 168 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
.++.+--...+|+ +++++...+++|+..|+...||+.|++-..
T Consensus 242 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~ty 286 (400)
T 2bfd_A 242 RGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTY 286 (400)
T ss_dssp GTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 5555533334444 678888889999888887789999999874
No 90
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=85.90 E-value=2.7 Score=46.41 Aligned_cols=115 Identities=20% Similarity=0.157 Sum_probs=69.8
Q ss_pred eEE-eCcchHHHHHHHhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCC
Q 044559 84 NLI-GCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161 (585)
Q Consensus 84 ~~i-~~~~E~~A~~~A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~ 161 (585)
|++ ...-|++++.+|.|.|...|. .++. |..+-..=+-.++..+-..+.||+++....... .+.+..-||.
T Consensus 428 R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~-tf~~Fs~f~~~air~~al~~lpVv~v~~~~gig-vG~dG~THq~----- 500 (690)
T 3m49_A 428 KNIWYGVREFAMGAAMNGIALHGGLKTYGG-TFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIA-VGEDGPTHEP----- 500 (690)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGCC-----
T ss_pred ceEEcCchHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCCCCccCC-----
Confidence 455 456999999999999998666 6554 333322223455666677899998886432221 2322233432
Q ss_pred hhHHHhhhcceeEEE-EEeCChhhHHHHHHHHHHHhhhc-CCcEEEEecCC
Q 044559 162 FSQELRCFQTVTCYQ-AVVNNLEDAHELIDTAVSTALKE-SKPVYISVACN 210 (585)
Q Consensus 162 ~~dq~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~-~GPV~i~iP~d 210 (585)
..++.+++.+.... ....++.++.. +++.|... .+||+|.+|..
T Consensus 501 -ied~a~lr~iPnl~V~~Pad~~E~~~----~l~~Ai~~~~~Pv~ir~~R~ 546 (690)
T 3m49_A 501 -IEQLAALRAMPNVSVIRPADGNESVA----AWRLALESTNKPTALVLTRQ 546 (690)
T ss_dssp -SSHHHHHHTSTTCEEECCSSHHHHHH----HHHHHHHCSSSCEEEECCSS
T ss_pred -HHHHHHHhcCCCCEEEeeCCHHHHHH----HHHHHHHcCCCCEEEEeecc
Confidence 23567888775433 33344455444 45555555 69999998853
No 91
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=85.72 E-value=1.4 Score=45.34 Aligned_cols=113 Identities=15% Similarity=-0.036 Sum_probs=65.9
Q ss_pred HHHHHhHHhHhc---Cc-cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHH
Q 044559 94 AGYAADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQEL 166 (585)
Q Consensus 94 A~~~A~Gyar~t---g~-~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~ 166 (585)
..-+|.|.|++. +. .++++..|=|+++ ..-++..|..-++|+|+|.-+.... .... .....+ ...+..
T Consensus 186 ~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~g-i~~~--~~~~~~--~~~d~a 260 (407)
T 1qs0_A 186 QFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWA-ISTF--QAIAGG--ESTTFA 260 (407)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEE-TTEE--GGGGTT--TTCCST
T ss_pred chhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcc-eeec--cccccC--CCCCHH
Confidence 334566666543 33 4455555666665 3457777888999988887544222 1110 111110 011222
Q ss_pred hhhcceeEEEEEeC--ChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 167 RCFQTVTCYQAVVN--NLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 167 ~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
+.++.+--...+|+ +++++...+++|+..++...||+.|++-..-
T Consensus 261 ~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 307 (407)
T 1qs0_A 261 GRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYR 307 (407)
T ss_dssp HHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred HHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 33444333334454 6778888999999888888899999998654
No 92
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=84.47 E-value=1.8 Score=46.59 Aligned_cols=120 Identities=8% Similarity=-0.058 Sum_probs=71.2
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeee--eecCCC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEV--EIHDGP 502 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~--~~~~~~ 502 (585)
.+++....-.+ +.-+|.|.+.+.. +.++++-=| +....+..+.+|...++|+++|.-+-......+ .+|...
T Consensus 44 i~~i~~~~E~~---A~~~A~Gyar~tg--~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~ 118 (552)
T 1ovm_A 44 ICWVGCANELN---ASYAADGYARCKG--FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTL 118 (552)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHHS--CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSC
T ss_pred ceEEeeCcHHH---HHHHHHHHHHhhC--CcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCCCHHHHhccccccccc
Confidence 44555444332 3357778777653 455554333 445558899999999999999998766443311 111000
Q ss_pred c-CCCCCCChHHHHHHhcCCCCCceeEEEcC---HHHHHHHHHhhcCCCCCCeEEEEEEcC
Q 044559 503 Y-NVIKNWNYTGLVDAIHNGEGKCWTTKVFC---EEELIEAIENATGPKKDCLCFIEVLVH 559 (585)
Q Consensus 503 ~-~~~~~~d~~~la~a~G~~~~~~~~~~V~~---~~eL~~aL~~a~~~~~~gp~vIeV~v~ 559 (585)
. ..+. |+..+++.+-. ..+++++ ++.+.++++.+.. ..||+.|++..|
T Consensus 119 g~~~~q--~~~~~~~~~tk-----~~~~v~~~~~~~~i~~A~~~a~~--~~GPV~l~iP~d 170 (552)
T 1ovm_A 119 GDGEFR--HFYHMSEPITV-----AQAVLTEQNACYEIDRVLTTMLR--ERRPGYLMLPAD 170 (552)
T ss_dssp SSSCCS--HHHHHTGGGCS-----EEEECCTTTHHHHHHHHHHHHHH--HTCCEEEEEEHH
T ss_pred CCCcHH--HHHHHHHhhee-----EEEEEccccHHHHHHHHHHHHHh--CCCCEEEEeehh
Confidence 0 0111 45666666665 7788888 3344445554543 359999999875
No 93
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=84.16 E-value=5.8 Score=40.10 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=63.5
Q ss_pred HHHHhHHhHhc---Cc-cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHh
Q 044559 95 GYAADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR 167 (585)
Q Consensus 95 ~~~A~Gyar~t---g~-~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~ 167 (585)
.-+|.|.|++. |. .++++..|=|+++ ..-++..|..-+.|+|+|.-+.... .... ........++.. +
T Consensus 146 lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g-~~t~--~~~~~~~~~~~~--r 220 (365)
T 2ozl_A 146 VPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYG-MGTS--VERAAASTDYYK--R 220 (365)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEE--HHHHCSCCCGGG--T
T ss_pred hHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcc-cCCC--cccccCCCCHHH--H
Confidence 34556666543 33 4555556766666 2446778888899999998443211 1110 000000011111 1
Q ss_pred hhcceeEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 168 CFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 168 ~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
.+ .+.-..+.=.+++++...+++|+..++...||+.|++-..-
T Consensus 221 a~-g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R 263 (365)
T 2ozl_A 221 GD-FIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYR 263 (365)
T ss_dssp TT-TSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred hC-CCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 11 12222233337889999999999888888999999998654
No 94
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=83.60 E-value=2.7 Score=42.59 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=57.7
Q ss_pred hhHHHHhhhhcCCCCcEEEE-EccchhcccHHHHHH-HHHh--------CCceEEEEEeCCcceeeeeecCCCcCCCCCC
Q 044559 440 SVGATLGYAQSVPEKRVIAC-IGDGSFQVTAQDVST-MLRC--------GQKTIIFLINNGGYTIEVEIHDGPYNVIKNW 509 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v-~GDGsf~~~~~eL~t-a~~~--------~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~ 509 (585)
.++.|.|++++. -++++.+ .+|.. +.....|.. +... ++|+++++-+-++.+ ++.. +..
T Consensus 110 ~v~~a~G~A~~G-~rpv~~~tf~~Fl-~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g------~g~~---hs~ 178 (369)
T 1ik6_A 110 ILGFAMGMAMAG-LKPVAEIQFVDFI-WLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTR------GGLY---HSN 178 (369)
T ss_dssp HHHHHHHHHHTT-CEEEEECCCC-----CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------------
T ss_pred HHHHHHHHHHCC-CeeEEEecchhHH-HHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCC------CCcc---ccc
Confidence 456778887763 4666655 88865 445555544 3333 999888876544222 1111 112
Q ss_pred ChHHHHHHh-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEE
Q 044559 510 NYTGLVDAI-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFI 554 (585)
Q Consensus 510 d~~~la~a~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vI 554 (585)
.+..+.+.. |+ ..+...++.|+..+|+.+++ .++|++|
T Consensus 179 ~~~a~l~~iPnl-----~V~~Psd~~e~~~ll~~A~~--~~~Pv~i 217 (369)
T 1ik6_A 179 SPEAIFVHTPGL-----VVVMPSTPYNAKGLLKAAIR--GDDPVVF 217 (369)
T ss_dssp -HHHHHHTCTTC-----EEECCCSHHHHHHHHHHHHH--SSSCEEE
T ss_pred cHHHHHcCCCCc-----EEEecCCHHHHHHHHHHHHh--CCCCEEE
Confidence 234555554 55 78888999999999999986 7899988
No 95
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=83.49 E-value=3.5 Score=45.51 Aligned_cols=157 Identities=12% Similarity=0.052 Sum_probs=89.9
Q ss_pred CCCcHHHHHHHHHHHcCC--CEEEecCCCChHH-H-----HHhhhcC-------CC---CeEEe-CcchHHHHHHHhHHh
Q 044559 42 SESTLGRHLARRLVQIGA--TDVFSVPGDFNLT-L-----LDHLIAE-------PG---LNLIG-CCNELNAGYAADGYA 102 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~~GV--~~vFg~PG~~~~~-l-----~~al~~~-------~~---i~~i~-~~~E~~A~~~A~Gya 102 (585)
..++.-+++.+.|.+..= ..++++-.+-... - ...+.+. ++ =|++. ..-|++++.+|.|+|
T Consensus 373 ~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA 452 (700)
T 3rim_A 373 KALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGIV 452 (700)
T ss_dssp SCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHHH
Confidence 345666777777776554 3455543322111 0 1223211 21 26664 479999999999999
Q ss_pred HhcCc-cEEEEeCChhhHHHHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEE-EEeC
Q 044559 103 RSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQ-AVVN 180 (585)
Q Consensus 103 r~tg~-~v~~~tsGpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~-~~v~ 180 (585)
...|. .++. |..+=..-+.+.|-.+-..+.||+++....... .+.+..-|| ...++.+++.+.... ....
T Consensus 453 ~~gG~~Pv~~-tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~g-vG~dG~THq------~ied~a~lr~iPnl~V~~Pa 524 (700)
T 3rim_A 453 LHGPTRAYGG-TFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIG-LGEDGPTHQ------PIEHLSALRAIPRLSVVRPA 524 (700)
T ss_dssp HHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTS------CSSHHHHHHTSTTCEEECCS
T ss_pred HcCCCEEEEE-ecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcc-cCCCCCccC------ChhHHHHHhcCCCCEEEeCC
Confidence 98666 6665 443333345667777778899998875322221 232222333 334577888775432 3334
Q ss_pred ChhhHHHHHHHHHHHhhhc-C--CcEEEEecCC
Q 044559 181 NLEDAHELIDTAVSTALKE-S--KPVYISVACN 210 (585)
Q Consensus 181 ~~~~~~~~l~~A~~~a~~~-~--GPV~i~iP~d 210 (585)
++.++..+++ .|... . |||+|.+|..
T Consensus 525 d~~e~~~~l~----~Ai~~~~~~~Pv~ir~~r~ 553 (700)
T 3rim_A 525 DANETAYAWR----TILARRNGSGPVGLILTRQ 553 (700)
T ss_dssp SHHHHHHHHH----HHHTTTTCSSCEEEECCSS
T ss_pred CHHHHHHHHH----HHHHccCCCCCEEEEeccc
Confidence 5555555544 44444 3 7999999854
No 96
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=83.40 E-value=0.91 Score=46.68 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=58.8
Q ss_pred chhHHHHhhhhcCCCCcEEEEEccchhcccHHHHHHHHHhCCceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHH--
Q 044559 439 WSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVD-- 516 (585)
Q Consensus 439 ~~lpaAiGaalA~p~r~vv~v~GDGsf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~-- 516 (585)
.++++|+|++++ ..|.++...|.|-.++ ...|.++...++|+++++.+..+.+.... .+.+..+.-...++.
T Consensus 75 ~a~~~a~Gaa~a-G~r~~~~ts~~G~~~~-~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~----~~~~~sd~~~~~~~~~g 148 (395)
T 1yd7_A 75 ASIAAAIGASWA-GAKAMTATSGPGFSLM-QENIGYAVMTETPVVIVDVQRSGPSTGQP----TLPAQGDIMQAIWGTHG 148 (395)
T ss_dssp HHHHHHHHHHHT-TCCEEEEEETTHHHHH-TTTCC----CCCCEEEEEEC------------------------------
T ss_pred HHHHHHHHHHHh-CCcEEEEeCchHHHHH-HHHHHHHHhcCCCEEEEEeeCCCCCCCCC----cccchhHHHHHHhccCC
Confidence 466888999887 4567777778776553 44566777889999999998776652100 000000000111122
Q ss_pred HhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEE
Q 044559 517 AIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVL 557 (585)
Q Consensus 517 a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~ 557 (585)
.+|+ ..+...+++|....+.+|+. .+.+.|+++...
T Consensus 149 ~~g~-----~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~ 186 (395)
T 1yd7_A 149 DHSL-----IVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTD 186 (395)
T ss_dssp CCCC-----EEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred Ccce-----EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcc
Confidence 2455 77888999998888888763 124589888764
No 97
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=81.67 E-value=1.4 Score=47.56 Aligned_cols=121 Identities=9% Similarity=-0.014 Sum_probs=73.5
Q ss_pred CeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccc-hhcccHHHHHHHHHhCCceEEEEEeCCcceeee--eecCCC
Q 044559 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEV--EIHDGP 502 (585)
Q Consensus 426 ~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDG-sf~~~~~eL~ta~~~~lpv~ivV~NN~~~~~~~--~~~~~~ 502 (585)
.+++....-.+ +.-+|.|.+.+.. +.+|++-=| +..-.+..+.+|...++|+++|.-+.......+ .++...
T Consensus 64 i~~i~~~~E~~---A~~~A~GyAr~tG--~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~ 138 (570)
T 2vbf_A 64 MKWIGNANELN---ASYMADGYARTKK--AAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTL 138 (570)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHHS--CEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSC
T ss_pred CeEECcCcHHH---HHHHHHHHHHHhC--CeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeec
Confidence 44555544332 3457778776643 555554333 444568899999999999999998876543311 011000
Q ss_pred c-CCCCCCChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcC--CCCCCeEEEEEEcC
Q 044559 503 Y-NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATG--PKKDCLCFIEVLVH 559 (585)
Q Consensus 503 ~-~~~~~~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~--~~~~gp~vIeV~v~ 559 (585)
. .++ .|+..+++.+-. +..++.+ +++...+++++. ....||+.|+|..|
T Consensus 139 ~~~~~--~~~~~~~~~~tk-----~~~~v~~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 139 ADGDF--KHFMKMHEPVTA-----ARTLLTA-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp SSSCC--CHHHHHTGGGCS-----EEEECCT-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred cccch--HHHHHHhhhhEE-----EEEEECc-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 0 011 135667777765 7888887 776666665553 11358999999876
No 98
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=76.87 E-value=11 Score=38.09 Aligned_cols=111 Identities=18% Similarity=0.105 Sum_probs=60.8
Q ss_pred HHHHhHHhHh---cCc-cEEEEeCChhhHH---HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHh
Q 044559 95 GYAADGYARS---RGV-GACVVTFTVGGLS---VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR 167 (585)
Q Consensus 95 ~~~A~Gyar~---tg~-~v~~~tsGpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~ 167 (585)
...|.|.|.+ .+. ..+++..|=|+++ ..-++..|...+.|+|+|.-+.... .... ........ +...
T Consensus 150 l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~g-i~~~--~~~~~~~~---d~~~ 223 (367)
T 1umd_A 150 VPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYA-ISVD--YRHQTHSP---TIAD 223 (367)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEE-TTEE--HHHHCSSS---CSGG
T ss_pred hhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCee-eccC--hhhccCCC---CHHH
Confidence 3344455433 233 4444445655553 2235777888999999888665422 1110 00001101 2234
Q ss_pred hhcceeEEEEEe--CChhhHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 044559 168 CFQTVTCYQAVV--NNLEDAHELIDTAVSTALKESKPVYISVACNL 211 (585)
Q Consensus 168 ~~~~~tk~~~~v--~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~dv 211 (585)
+++.+--...+| .++..+.+.+++|++.+....||+.|++-..-
T Consensus 224 ~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r 269 (367)
T 1umd_A 224 KAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYR 269 (367)
T ss_dssp GGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred HHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 444432222233 45566778888888888877899999997654
No 99
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=76.66 E-value=2.9 Score=41.87 Aligned_cols=99 Identities=10% Similarity=-0.050 Sum_probs=61.4
Q ss_pred hhHHHHhhhhcCCCCcEEEE-EccchhcccHHHHHHHH---------HhCCceEEEEEeCCcceeeeeecCCCcCCCCCC
Q 044559 440 SVGATLGYAQSVPEKRVIAC-IGDGSFQVTAQDVSTML---------RCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNW 509 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v-~GDGsf~~~~~eL~ta~---------~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~ 509 (585)
.++.|.|++++. -++++.+ .+|.. +.....|...+ ..++|+++++- ++.++- ++..- -..+
T Consensus 74 ~v~~a~G~A~~G-~rp~~~~~f~~F~-~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~-~G~~g~-----~G~tH-s~~~ 144 (341)
T 2ozl_B 74 FAGIAVGAAMAG-LRPICEFMTFNFS-MQAIDQVINSAAKTYYMSGGLQPVPIVFRGP-NGASAG-----VAAQH-SQCF 144 (341)
T ss_dssp HHHHHHHHHHTT-CEEEEECSSGGGG-GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEE-CSCCSS-----CCGGG-CCCC
T ss_pred HHHHHHHHHHCC-CEEEEEeccHHHH-HHHHHHHHHHHHHHHhhccccCCCCEEEEEc-CcCCCC-----CCcch-hhHH
Confidence 456788887763 4566654 77776 44444444322 26899988877 453321 22111 0223
Q ss_pred ChHHHHHHh-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEE
Q 044559 510 NYTGLVDAI-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEV 556 (585)
Q Consensus 510 d~~~la~a~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV 556 (585)
| .+.+.. |+ ..+...|+.|+..+++.+++ .++|++|-.
T Consensus 145 e--a~l~~iP~l-----~V~~Psd~~e~~~~l~~a~~--~~~Pv~i~~ 183 (341)
T 2ozl_B 145 A--AWYGHCPGL-----KVVSPWNSEDAKGLIKSAIR--DNNPVVVLE 183 (341)
T ss_dssp H--HHHHTSTTC-----EEECCCSHHHHHHHHHHHHH--SSSCEEEEE
T ss_pred H--HHhccCCCC-----EEEEeCCHHHHHHHHHHHHh--cCCCEEEEE
Confidence 3 333443 55 78888999999999999986 679998755
No 100
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=73.90 E-value=4.4 Score=40.49 Aligned_cols=98 Identities=12% Similarity=0.004 Sum_probs=60.4
Q ss_pred hhHHHHhhhhcCCCCcEEEE-EccchhcccHHHHHH-HH--H------hCCceEEEEEeCCcceeeeeecCC-CcCCCCC
Q 044559 440 SVGATLGYAQSVPEKRVIAC-IGDGSFQVTAQDVST-ML--R------CGQKTIIFLINNGGYTIEVEIHDG-PYNVIKN 508 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v-~GDGsf~~~~~eL~t-a~--~------~~lpv~ivV~NN~~~~~~~~~~~~-~~~~~~~ 508 (585)
.+++|.|++++. -|+++.+ .+|+. +.....|.+ +. + .++|+++++-+ ++.. ++ ... ..
T Consensus 64 ~~~~a~G~A~~G-~rp~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-~g~~------~G~th~--s~ 132 (338)
T 1qs0_B 64 IVGTAVGMGAYG-LRPVVEIQFADYF-YPASDQIVSEMARLRYRSAGEFIAPLTLRMPC-GGGI------YGGQTH--SQ 132 (338)
T ss_dssp HHHHHHHHHHHT-CEEEEECSCGGGC-GGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEE-CCSS------SCCSSS--SC
T ss_pred HHHHHHHHHhCC-CEEEEEeccHhHH-HHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeC-CCCC------CCcccc--cc
Confidence 456777777763 3555544 77775 444444432 22 2 25998888754 3321 22 111 12
Q ss_pred CChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEE
Q 044559 509 WNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIE 555 (585)
Q Consensus 509 ~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIe 555 (585)
-|..-+..--|+ ..+...++.|+...++.+++ .++|++|-
T Consensus 133 ~d~~~l~~iP~l-----~V~~Psd~~e~~~~l~~A~~--~~~Pv~i~ 172 (338)
T 1qs0_B 133 SPEAMFTQVCGL-----RTVMPSNPYDAKGLLIASIE--CDDPVIFL 172 (338)
T ss_dssp CCHHHHTTSTTC-----EEECCCSHHHHHHHHHHHHH--SSSCEEEE
T ss_pred cHHHHHhcCCCC-----EEEeeCCHHHHHHHHHHHHh--cCCcEEEE
Confidence 355444433377 88889999999999999996 58999983
No 101
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=66.04 E-value=3.9 Score=35.90 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 241 AVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 241 ~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
..++++++|..|++.+|+-|.|-.-+.+.-.+++|++.|
T Consensus 19 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L 57 (186)
T 2bru_C 19 TAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKL 57 (186)
T ss_dssp -CHHHHHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999998777777777766654
No 102
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=63.03 E-value=4.3 Score=35.67 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 242 v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
.++++++|..|++.+|+-|.|-.-+.+.-.+++|++.|
T Consensus 12 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L 49 (184)
T 1d4o_A 12 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKML 49 (184)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998777777777777665
No 103
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=62.72 E-value=3.8 Score=35.83 Aligned_cols=38 Identities=39% Similarity=0.450 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 242 v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
.++++++|..|++.+|+-|.|-.-+.+.-.+++|++.|
T Consensus 13 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L 50 (180)
T 1pno_A 13 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVL 50 (180)
T ss_dssp HHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999988777777777777665
No 104
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=60.45 E-value=32 Score=31.12 Aligned_cols=101 Identities=19% Similarity=0.189 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHH--hhhc-----CCCCeEEeCcchHH---HHHHHhHH----h-----Hhc
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLD--HLIA-----EPGLNLIGCCNELN---AGYAADGY----A-----RSR 105 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~--al~~-----~~~i~~i~~~~E~~---A~~~A~Gy----a-----r~t 105 (585)
..++.|++.|++.|-=++||+-++....... .|.. ..+++.+....+.+ |..-..|| + ..+
T Consensus 34 ~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~~~~ 113 (201)
T 3trj_A 34 QAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAALGN 113 (201)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHhhCC
Confidence 4567778888888999999987665443322 2331 24677666542322 11111222 1 123
Q ss_pred CccEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 044559 106 GVGACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPNSN 145 (585)
Q Consensus 106 g~~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~~~ 145 (585)
..-++++.|..| ..+.+.++..|...+.|+|.||+.....
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~ 154 (201)
T 3trj_A 114 EDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGA 154 (201)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCG
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCH
Confidence 234555555555 4568889999999999999999875543
No 105
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=60.45 E-value=4.5 Score=36.37 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 242 v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
.++++++|..|++.+|+-|+|-.-+.+.-.+++|++.|
T Consensus 35 ~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L 72 (207)
T 1djl_A 35 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKML 72 (207)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHH
Confidence 35788999999999999999998777777777777664
No 106
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=60.41 E-value=4.5 Score=36.24 Aligned_cols=38 Identities=39% Similarity=0.450 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHh
Q 044559 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279 (585)
Q Consensus 242 v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~ 279 (585)
.++++++|..|++.+|+-|+|-.-+.+.-.+++|++.|
T Consensus 36 ~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L 73 (203)
T 2fsv_C 36 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVL 73 (203)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHH
Confidence 45788999999999999999988777777777777665
No 107
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=58.78 E-value=15 Score=36.37 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=58.9
Q ss_pred hhHHHHhhhhcCCCCcEEEE-EccchhcccHHHHHH-HHH--------hCCceEEEEEeCCcceeeeeecCCCcCCCCCC
Q 044559 440 SVGATLGYAQSVPEKRVIAC-IGDGSFQVTAQDVST-MLR--------CGQKTIIFLINNGGYTIEVEIHDGPYNVIKNW 509 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v-~GDGsf~~~~~eL~t-a~~--------~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~ 509 (585)
+++.|.|++++. -++++.+ .++.. +.....|.. +.. .++|+++++- .+++.. ++... ...
T Consensus 63 ~v~~a~G~A~~G-~~p~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~~----~g~~h--s~~ 132 (324)
T 1umd_B 63 IVGAALGMAAHG-LRPVAEIQFADYI-FPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP--SGGGVR----GGHHH--SQS 132 (324)
T ss_dssp HHHHHHHHHHHT-CEEEEECSSGGGC-GGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE--ECSSSS----CGGGS--SCC
T ss_pred HHHHHHHHHHCC-CEEEEEeccHhHH-HHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc--CCCCCC----CCCcc--chh
Confidence 456678887763 3555554 66664 334434432 221 5888887765 333221 11111 122
Q ss_pred ChHHHHHHh-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEE
Q 044559 510 NYTGLVDAI-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFI 554 (585)
Q Consensus 510 d~~~la~a~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vI 554 (585)
|. .+.+.+ |+ ..+...++.|+..+++++++ .++|++|
T Consensus 133 ~~-a~~~~iP~~-----~V~~P~d~~e~~~~l~~a~~--~~~Pv~i 170 (324)
T 1umd_B 133 PE-AHFVHTAGL-----KVVAVSTPYDAKGLLKAAIR--DEDPVVF 170 (324)
T ss_dssp CH-HHHHTSTTC-----EEEECCSHHHHHHHHHHHHH--CSSCEEE
T ss_pred HH-HHHhcCCCC-----EEEEeCCHHHHHHHHHHHHh--cCCCEEE
Confidence 33 555554 55 78888999999999999986 7789988
No 108
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=58.28 E-value=39 Score=29.82 Aligned_cols=97 Identities=19% Similarity=0.104 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHh--h-----hcCCCCeEEeCcchHH---HHHHHhHH--------hH-hcC
Q 044559 46 LGRHLARRLVQIGATDVFSVPGDFNLTLLDH--L-----IAEPGLNLIGCCNELN---AGYAADGY--------AR-SRG 106 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~a--l-----~~~~~i~~i~~~~E~~---A~~~A~Gy--------ar-~tg 106 (585)
.++.|++.|.+.+-=++||+-++.......+ | ....+++.+....+.+ +..-..+| .. .+.
T Consensus 31 ~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (188)
T 1tk9_A 31 VGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGNE 110 (188)
T ss_dssp HHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhCCC
Confidence 4556667777787777788765554333222 1 1123566555432222 11111111 22 233
Q ss_pred ccEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCC
Q 044559 107 VGACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGP 142 (585)
Q Consensus 107 ~~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~ 142 (585)
.-++++.|-.| ..+.+.++..|...+.++|.||+..
T Consensus 111 ~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~ 147 (188)
T 1tk9_A 111 KDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKG 147 (188)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34555555555 4567888888999999999999853
No 109
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=57.34 E-value=30 Score=26.86 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=41.3
Q ss_pred ChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHHHH
Q 044559 510 NYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSR 573 (585)
Q Consensus 510 d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~ 573 (585)
.|..+.+--|. +...|.++.||...+++... .-..+++-|.+|..+..+.-.++.+.
T Consensus 17 kfkdiikkngf-----kvrtvrspqelkdsieelvk--kynativvvvvddkewaekairfvks 73 (134)
T 2l69_A 17 KFKDIIKKNGF-----KVRTVRSPQELKDSIEELVK--KYNATIVVVVVDDKEWAEKAIRFVKS 73 (134)
T ss_dssp HHHHHHHHTTC-----EEEEECSHHHHHHHHHHHTT--CCCCEEEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCc-----eEEEecCHHHHHHHHHHHHH--HhCCeEEEEEEccHHHHHHHHHHHHh
Confidence 36777788888 88899999999999998874 44456667777766655554444443
No 110
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=54.54 E-value=13 Score=36.70 Aligned_cols=97 Identities=12% Similarity=-0.068 Sum_probs=57.7
Q ss_pred hhHHHHhhhhcCCCCcEEEE-EccchhcccHHHHHH-HHH--------hCCceEEEEEeCCcceeeeeecCCCcCCCCCC
Q 044559 440 SVGATLGYAQSVPEKRVIAC-IGDGSFQVTAQDVST-MLR--------CGQKTIIFLINNGGYTIEVEIHDGPYNVIKNW 509 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v-~GDGsf~~~~~eL~t-a~~--------~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~ 509 (585)
++++|.|++++ .-|+++.+ .++.. +.....|.. +.. .++|+++++- .+++.. ++... ...
T Consensus 62 ~v~~a~G~A~~-G~rp~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~~----~g~~h--s~~ 131 (324)
T 1w85_B 62 IGGLAIGLALQ-GFRPVPEIQFFGFV-YEVMDSICGQMARIRYRTGGRYHMPITIRSP--FGGGVH----TPELH--SDS 131 (324)
T ss_dssp HHHHHHHHHHT-TCEEEEBCSSGGGG-GGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE--ECSSSC----CCTTS--SCC
T ss_pred HHHHHHHHHhC-CCEEEEEecchhHH-HHHHHHHHHHHHHHhhhccCCCcCCEEEEEe--ccCCCC----CCCcc--ccc
Confidence 45778888876 34555544 66665 344433432 222 5788877653 333221 12111 123
Q ss_pred ChHHHHHHh-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEE
Q 044559 510 NYTGLVDAI-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFI 554 (585)
Q Consensus 510 d~~~la~a~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vI 554 (585)
|. .+.+++ |+ ..+...++.|+...++++++ .++|++|
T Consensus 132 ~~-a~~~~iP~l-----~V~~Psd~~e~~~~l~~a~~--~~~Pv~i 169 (324)
T 1w85_B 132 LE-GLVAQQPGL-----KVVIPSTPYDAKGLLISAIR--DNDPVIF 169 (324)
T ss_dssp CH-HHHTTSTTC-----EEECCSSHHHHHHHHHHHHH--SSSCEEE
T ss_pred HH-HHHccCCCC-----EEEeeCCHHHHHHHHHHHHH--cCCCEEE
Confidence 33 444443 45 77778999999999999986 7789988
No 111
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=52.86 E-value=6.2 Score=29.92 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=36.9
Q ss_pred CCCCCcHHHHH------HHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHH
Q 044559 40 NPSESTLGRHL------ARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNA 94 (585)
Q Consensus 40 ~~~~~~~a~~i------~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A 94 (585)
+.++++.+|++ ++.|.++|+. .+|+|.+...+|-+++... ++..-....|-.+
T Consensus 3 It~d~tI~eIv~~~P~~~~vf~~~G~~-C~gC~~a~~~tLeeA~~~h-giD~d~ll~eLn~ 61 (76)
T 2k53_A 3 ITKDMIIADVLQMDRGTAPIFINNGMH-CLGCPSSMGESIEDACAVH-GIDADKLVKELNE 61 (76)
T ss_dssp CCTTSBHHHHHHHCGGGHHHHHHTTCC-CCSSCCCCCSBHHHHHHHH-TCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCHHHHHHHHHcCCC-CCCCCccccccHHHHHHHc-CCCHHHHHHHHHH
Confidence 45678888877 5889999999 9999977667788887653 4543333333333
No 112
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=50.97 E-value=75 Score=28.10 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHh--hh-----cCCCCeEEeCcchHHH---HHH--------HhHHhH-hcC
Q 044559 46 LGRHLARRLVQIGATDVFSVPGDFNLTLLDH--LI-----AEPGLNLIGCCNELNA---GYA--------ADGYAR-SRG 106 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~a--l~-----~~~~i~~i~~~~E~~A---~~~--------A~Gyar-~tg 106 (585)
.++.|++.+.+.+-=++||+-++......-+ +. ...+++.+....+.+- ..- ...+.. .+.
T Consensus 37 ~~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (198)
T 2xbl_A 37 VADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNE 116 (198)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCEEEEEeCcHhhHHHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHHHhhCCC
Confidence 3455566667777667777755544332221 11 1245666655322221 111 112222 233
Q ss_pred ccEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCCC
Q 044559 107 VGACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPNS 144 (585)
Q Consensus 107 ~~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 144 (585)
.-++++.|..| ..+.+.++..|...+.++|.||+....
T Consensus 117 ~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s 155 (198)
T 2xbl_A 117 GDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGG 155 (198)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 34555555555 456788888899999999999986443
No 113
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=50.82 E-value=38 Score=33.21 Aligned_cols=102 Identities=21% Similarity=0.306 Sum_probs=57.7
Q ss_pred CEEEcCCcccccchHHHHHHHHHHhCCceEeCCCC--ccccCCCCCCccccccCCCCCCc--cccccc-------ccCCC
Q 044559 255 PVLVAGPKMRVAKACNAFVELADACGYAVAVMPSA--KGLVPEHHPHFIGTYWGAVSTAF--FSVGYS-------LLLKK 323 (585)
Q Consensus 255 pvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g--kg~~~~~hp~~~g~~~g~~~~~~--~~~~~~-------~~~~~ 323 (585)
.++-.|.|....+..+.+.+||+.+|.-|-+|-.. .|.+|. ...+|.. |..-.+. ...|-+ .....
T Consensus 199 ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqT-Gk~V~P~lYiA~GISGAiQHlaGm~~s 275 (315)
T 1efv_A 199 VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPN--DMQVGQT-GKIVAPELYIAVGISGAIQHLAGMKDS 275 (315)
T ss_dssp EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTT-SBCCCCSEEEEESCCCCHHHHTTTTTC
T ss_pred EEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCH--HheeccC-CcccCcceEEEecccCcHHHHhhcccC
Confidence 34445667666666789999999999988776321 355554 3455543 2222221 111111 11122
Q ss_pred ccEEEEcCCcce--eccCCccc-cccHHHHHHHHHHHhcc
Q 044559 324 EKAVILQPDRVV--IANGPAFG-CVLMKDFLKALSKRLKS 360 (585)
Q Consensus 324 ~~~i~vd~d~~~--i~~~~~~~-~~~~~~~l~~L~~~l~~ 360 (585)
..+|-|+.|+.. +. ...|. -.|+..++.+|.+.++.
T Consensus 276 ~~IVAIN~D~~ApIf~-~ADygiVgDl~~v~P~L~~~l~~ 314 (315)
T 1efv_A 276 KTIVAINKDPEAPIFQ-VADYGIVADLFKVVPEMTEILKK 314 (315)
T ss_dssp SEEEEEESCTTCGGGG-TCSEEEESCHHHHHHHHHHHTC-
T ss_pred CEEEEEeCCCCCCcch-hcCeEEeeeHHHHHHHHHHHHhc
Confidence 346778888762 21 22222 23899999999988753
No 114
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=50.14 E-value=18 Score=36.11 Aligned_cols=96 Identities=13% Similarity=0.029 Sum_probs=57.8
Q ss_pred hhHHHHhhhhcCCCCcEEEE-EccchhcccHHHHH-HHH--Hh------CC-ceEEEEEeCCcceeeeeecCCC-cCCCC
Q 044559 440 SVGATLGYAQSVPEKRVIAC-IGDGSFQVTAQDVS-TML--RC------GQ-KTIIFLINNGGYTIEVEIHDGP-YNVIK 507 (585)
Q Consensus 440 ~lpaAiGaalA~p~r~vv~v-~GDGsf~~~~~eL~-ta~--~~------~l-pv~ivV~NN~~~~~~~~~~~~~-~~~~~ 507 (585)
.+++|.|++++. -|+++.+ .+|+.. .....|. .+. ++ +. |+++++.. ++.+ ++. .. .
T Consensus 79 ~v~~a~G~A~~G-~rp~~~~tf~~F~~-~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~-~g~~------~G~th~--~ 147 (342)
T 2bfd_B 79 IVGFGIGIAVTG-ATAIAEIQFADYIF-PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPW-GCVG------HGALYH--S 147 (342)
T ss_dssp HHHHHHHHHHTT-CCEEEECSSGGGCG-GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEE-SCCS------SCGGGS--S
T ss_pred HHHHHHHHHHCC-CeeEEEecchhHHH-HHHHHHHHHHHHHHhhhcCCccCCCEEEEEec-CCCC------CCcchh--h
Confidence 457788888763 4556544 777743 3333332 222 22 44 88887553 3221 221 11 1
Q ss_pred CCChHHHHHHh-cCCCCCceeEEEcCHHHHHHHHHhhcCCCCCCeEEE
Q 044559 508 NWNYTGLVDAI-HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFI 554 (585)
Q Consensus 508 ~~d~~~la~a~-G~~~~~~~~~~V~~~~eL~~aL~~a~~~~~~gp~vI 554 (585)
.-|..-+ +++ |+ ..+...++.|+..+++.+++ .++|++|
T Consensus 148 ~~d~~~l-~~iP~l-----~V~~Psd~~e~~~~l~~a~~--~~~Pv~i 187 (342)
T 2bfd_B 148 QSPEAFF-AHCPGI-----KVVIPRSPFQAKGLLLSCIE--DKNPCIF 187 (342)
T ss_dssp CCCHHHH-HTSTTC-----EEECCSSHHHHHHHHHHHHH--SSSCEEE
T ss_pred HhHHHHH-hcCCCc-----EEEeeCCHHHHHHHHHHHHh--cCCcEEE
Confidence 2344433 444 66 78888999999999999986 5789998
No 115
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=49.37 E-value=1.7e+02 Score=27.40 Aligned_cols=155 Identities=9% Similarity=-0.020 Sum_probs=80.6
Q ss_pred CCccCCCCCcHHHHHHHHHHHcC--CCEEEecCCCC--------hHHHHHhhhcCCCCeEEeCc--chHHHHH-HHhHHh
Q 044559 36 TPLVNPSESTLGRHLARRLVQIG--ATDVFSVPGDF--------NLTLLDHLIAEPGLNLIGCC--NELNAGY-AADGYA 102 (585)
Q Consensus 36 ~~~~~~~~~~~a~~i~~~L~~~G--V~~vFg~PG~~--------~~~l~~al~~~~~i~~i~~~--~E~~A~~-~A~Gya 102 (585)
.+.+......++..+++.|.+.| -+.+..+-|.. ...+.+++.+. +++++... .....++ ++..+-
T Consensus 105 ~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~l 183 (297)
T 3rot_A 105 LVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDK-GIFFEELDVGTDPNQVQSRVKSYF 183 (297)
T ss_dssp SCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHHHH
T ss_pred ceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhc-CCeEEEeecCCChHHHHHHHHHHH
Confidence 44555566778999999999999 77776665532 23466677664 66665432 2222222 222322
Q ss_pred HhcCc-cEEEEeCChhhHHHHHHHHHhhh----cCCcEEEEeCCCCCcccCCccccccccCCCChhHH-HhhhcceeEEE
Q 044559 103 RSRGV-GACVVTFTVGGLSVLNAIAGAYS----ENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE-LRCFQTVTCYQ 176 (585)
Q Consensus 103 r~tg~-~v~~~tsGpG~~n~~~~l~~A~~----~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq-~~~~~~~tk~~ 176 (585)
+.... -++++.+...+..++.++.++-. ..+.++-+-+. ... ..+.......+
T Consensus 184 ~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D~~---------------------~~~~~~i~~~~~ltt 242 (297)
T 3rot_A 184 KIHPETNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFDKT---------------------PNTVSLIHKKLVNYV 242 (297)
T ss_dssp HHCTTCCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEECCC---------------------HHHHHHHHTTSCCEE
T ss_pred HhCCCCCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEEeCCC---------------------HHHHHHHHcCCceEE
Confidence 33334 56777777667777777776654 24433332111 011 11122211122
Q ss_pred EEeCChhhH-HHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 044559 177 AVVNNLEDA-HELIDTAVSTALKESKPVYISVACNLPA 213 (585)
Q Consensus 177 ~~v~~~~~~-~~~l~~A~~~a~~~~GPV~i~iP~dv~~ 213 (585)
... ++.++ ...++.+++.......|-++.+|.++..
T Consensus 243 v~~-~~~~~g~~av~~l~~~i~g~~~~~~i~~~~~~~~ 279 (297)
T 3rot_A 243 MDQ-QPFLMGYLSITQLVLMNRYQLNPVNINTAMAENL 279 (297)
T ss_dssp ECC-CHHHHHHHHHHHHHHHHHHCCCCCCEECCC----
T ss_pred Eec-ChHHHHHHHHHHHHHHHhCCCCCcccccCceEEe
Confidence 222 34443 3445555555445567888999998854
No 116
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=47.02 E-value=47 Score=29.35 Aligned_cols=85 Identities=16% Similarity=-0.036 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhHH-
Q 044559 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE---PGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS- 120 (585)
Q Consensus 45 ~~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~n- 120 (585)
..++.|++++...|+=|+||.--++ .-..+++.+. ++..-+.- ....+-.=++++.|-.|-..
T Consensus 26 ~AA~llaqai~~~g~IyvfG~Ghs~-~~~~e~~~~~e~l~~~~~~~~------------~~~i~~~D~vii~S~Sg~n~~ 92 (170)
T 3jx9_A 26 DVVRLLAQALVGQGKVYLDAYGEFE-GLYPMLSDGPDQMKRVTKIKD------------HKTLHAVDRVLIFTPDTERSD 92 (170)
T ss_dssp HHHHHHHHHHHTTCCEEEEECGGGG-GGTHHHHTSTTCCTTEEECCT------------TCCCCTTCEEEEEESCSCCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCcHH-HHHHHHHcccCCccchhhhhh------------cCCCCCCCEEEEEeCCCCCHH
Confidence 4688999999999999999963332 2222344332 23322211 11333331333333333333
Q ss_pred HHHHHHHhhhcCCcEEEEeCCC
Q 044559 121 VLNAIAGAYSENLPLICIVGGP 142 (585)
Q Consensus 121 ~~~~l~~A~~~~~PllvI~g~~ 142 (585)
.+--...|...++|+|+||...
T Consensus 93 ~ie~A~~ake~G~~vIaITs~~ 114 (170)
T 3jx9_A 93 LLASLARYDAWHTPYSIITLGD 114 (170)
T ss_dssp HHHHHHHHHHHTCCEEEEESSC
T ss_pred HHHHHHHHHHCCCcEEEEeCcc
Confidence 4556667888999999999843
No 117
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=46.86 E-value=1.8e+02 Score=26.96 Aligned_cols=95 Identities=18% Similarity=0.115 Sum_probs=56.9
Q ss_pred CccCCCCCcHHHHHHHHHHH--cCCCEEEecCCCC--------hHHHHHhhhcCCCCeEEeC------c-chHHHHHHHh
Q 044559 37 PLVNPSESTLGRHLARRLVQ--IGATDVFSVPGDF--------NLTLLDHLIAEPGLNLIGC------C-NELNAGYAAD 99 (585)
Q Consensus 37 ~~~~~~~~~~a~~i~~~L~~--~GV~~vFg~PG~~--------~~~l~~al~~~~~i~~i~~------~-~E~~A~~~A~ 99 (585)
+.+......++...++.|.+ .|-++|.-+-|.. ...+.+++.+.++++++.. . +...+.-++.
T Consensus 101 ~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (291)
T 3l49_A 101 NNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVT 180 (291)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHH
T ss_pred ceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHH
Confidence 34445556788999999999 9999887776542 2345666766556664331 1 2222223333
Q ss_pred HHhHhcC---c-cEEEEeCChhhHHHHHHHHHhhhc
Q 044559 100 GYARSRG---V-GACVVTFTVGGLSVLNAIAGAYSE 131 (585)
Q Consensus 100 Gyar~tg---~-~v~~~tsGpG~~n~~~~l~~A~~~ 131 (585)
-+-+... . -++++.+...+..++.++.++-..
T Consensus 181 ~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 181 DMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCCC
Confidence 3333333 4 566777777777777777776444
No 118
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=44.73 E-value=61 Score=28.06 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCC----EEEecCCCChHHHHH-hhhc
Q 044559 49 HLARRLVQIGAT----DVFSVPGDFNLTLLD-HLIA 79 (585)
Q Consensus 49 ~i~~~L~~~GV~----~vFg~PG~~~~~l~~-al~~ 79 (585)
.-.+.|+++|++ .+|-+||+...|+.- .|.+
T Consensus 33 ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~ 68 (154)
T 1hqk_A 33 GAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELAR 68 (154)
T ss_dssp HHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHT
T ss_pred HHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh
Confidence 345889999997 799999999999885 3443
No 119
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=44.16 E-value=60 Score=28.93 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHH--HHhhh-----cCCCCeEEeCcchHHHHHH----HhHH---------hHhc
Q 044559 46 LGRHLARRLVQIGATDVFSVPGDFNLTL--LDHLI-----AEPGLNLIGCCNELNAGYA----ADGY---------ARSR 105 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~~vFg~PG~~~~~l--~~al~-----~~~~i~~i~~~~E~~A~~~----A~Gy---------ar~t 105 (585)
..+.+++.|.+.+-=++||+-++..... ...|. ...+++.+...... ..+. -.+| ...+
T Consensus 34 ~~~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 112 (199)
T 1x92_A 34 ASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDS-STITSIANDYSYNEVFSKQIRALGQ 112 (199)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCH-HHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHCCCEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCCh-hHHHHhhcCccHHHHHHHHHHhCCC
Confidence 4566678888887667777755443322 22231 23466666543211 1111 1122 1223
Q ss_pred CccEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCC
Q 044559 106 GVGACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPN 143 (585)
Q Consensus 106 g~~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~ 143 (585)
..-++++.|..| ..+.+.++..|...+.++|.||+...
T Consensus 113 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 151 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDG 151 (199)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 334555555555 45688889999999999999998643
No 120
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=43.04 E-value=61 Score=28.09 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCC----EEEecCCCChHHHHH
Q 044559 49 HLARRLVQIGAT----DVFSVPGDFNLTLLD 75 (585)
Q Consensus 49 ~i~~~L~~~GV~----~vFg~PG~~~~~l~~ 75 (585)
.-.+.|+++|++ .++-+||....|+.-
T Consensus 33 ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa 63 (154)
T 1rvv_A 33 GAEDALLRHGVDTNDIDVAWVPGAFEIPFAA 63 (154)
T ss_dssp HHHHHHHHTTCCGGGEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHcCCCccceEEEECCcHHHHHHHH
Confidence 345889999997 799999999999885
No 121
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=41.87 E-value=8.3 Score=28.95 Aligned_cols=43 Identities=26% Similarity=0.214 Sum_probs=33.9
Q ss_pred CCCCCcHHHHH------HHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCe
Q 044559 40 NPSESTLGRHL------ARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLN 84 (585)
Q Consensus 40 ~~~~~~~a~~i------~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~ 84 (585)
...+++.+|++ ++.|.++|+ ..|++||+...+|-+++... ++.
T Consensus 5 i~~d~tI~eiv~~~P~~~~vf~~~G~-~c~~C~~a~~~tL~~Aa~~~-gid 53 (73)
T 2k5e_A 5 FTKDMTFAQALQTHPGVAGVLRSYNL-GCIGCMGAQNESLEQGANAH-GLN 53 (73)
T ss_dssp SCSSSBHHHHHHHCTHHHHHHHHTTG-GGGGTTTGGGSBHHHHHHHT-TCC
T ss_pred CCCCCCHHHHHHHCHHHHHHHHHcCC-CCCCCCccccccHHHHHHHc-CCC
Confidence 34678899877 578999999 58999998888888888653 553
No 122
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=41.84 E-value=75 Score=35.85 Aligned_cols=97 Identities=13% Similarity=0.051 Sum_probs=58.8
Q ss_pred cEEEEeCChhhH----HHHHHHHHhhhcCCc---EEEEeCCCCCcccCCccccccccCCCChhHHHhhhcce--eEEEEE
Q 044559 108 GACVVTFTVGGL----SVLNAIAGAYSENLP---LICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTV--TCYQAV 178 (585)
Q Consensus 108 ~v~~~tsGpG~~----n~~~~l~~A~~~~~P---llvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~--tk~~~~ 178 (585)
.++++..|=|+. +..-++.-|...+.| +|+|.-+.... ........+. .... .+.++.+ .-..+.
T Consensus 278 ~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g-~st~~~~~~s--~~~~---~~~a~a~G~p~~~Vd 351 (868)
T 2yic_A 278 VVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTTAPTDSRS--SEYC---TDVAKMIGAPIFHVN 351 (868)
T ss_dssp EEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTBCHHHHCS--SSST---TGGGGGGTCCEEEEE
T ss_pred ceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcc-cccCcccccc--ccCH---HHHHHhCCCcEEEEe
Confidence 677788888873 344556667778898 99998654322 1111000000 0111 1233333 223333
Q ss_pred eCChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 179 VNNLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 179 v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
=.+++.+.+.+++|+..++...|||.|++-.-
T Consensus 352 G~D~~av~~a~~~A~~~ar~~~~PvlIe~~ty 383 (868)
T 2yic_A 352 GDDPEACAWVARLAVDFRQAFKKDVVIDMLCY 383 (868)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 34788899999999988888899999998654
No 123
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=41.68 E-value=1.1e+02 Score=26.99 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHH--Hhhhc-----CCCCeEEeCcchHHHHHH---HhHH---------hHhcC
Q 044559 46 LGRHLARRLVQIGATDVFSVPGDFNLTLL--DHLIA-----EPGLNLIGCCNELNAGYA---ADGY---------ARSRG 106 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~~vFg~PG~~~~~l~--~al~~-----~~~i~~i~~~~E~~A~~~---A~Gy---------ar~tg 106 (585)
..+.+++.+.+.+-=++||+-++...... ..+.. ..+++.+....+.+...+ -.+| ...+.
T Consensus 30 ~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~ 109 (196)
T 2yva_A 30 AAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHA 109 (196)
T ss_dssp HHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCCC
Confidence 45678889988887788888655433222 12321 346666655432221110 1122 12233
Q ss_pred ccEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCCC
Q 044559 107 VGACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPNS 144 (585)
Q Consensus 107 ~~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 144 (585)
.-++++.|..| ..+.+.++..|...+.++|.||+....
T Consensus 110 ~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 148 (196)
T 2yva_A 110 GDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 34555555555 456888889999999999999986543
No 124
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=41.27 E-value=9 Score=22.39 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=11.4
Q ss_pred ccccchhHHHHhhh
Q 044559 435 GSIGWSVGATLGYA 448 (585)
Q Consensus 435 g~mG~~lpaAiGaa 448 (585)
.+||++++.|.|+-
T Consensus 6 ngigyaigyafgav 19 (32)
T 2keg_A 6 NGIGYAIGYAFGAV 19 (32)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cCcceeehhhhhHH
Confidence 56899999998874
No 125
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=40.80 E-value=51 Score=38.37 Aligned_cols=97 Identities=15% Similarity=0.026 Sum_probs=59.5
Q ss_pred cEEEEeCChhhH----HHHHHHHHhhhcCCc---EEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeC
Q 044559 108 GACVVTFTVGGL----SVLNAIAGAYSENLP---LICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVN 180 (585)
Q Consensus 108 ~v~~~tsGpG~~----n~~~~l~~A~~~~~P---llvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~ 180 (585)
.++++..|=|+. ...-++.-|..-+.| +|+|.-+.... .....-. ....... .+.++.+--...+|+
T Consensus 523 ~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~g-ist~~~~--~~s~~~~---~~~a~a~G~p~~~Vd 596 (1113)
T 2xt6_A 523 VVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTTAPTD--SRSSEYC---TDVAKMIGAPIFHVN 596 (1113)
T ss_dssp EEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTBCHHH--HCSSSST---TGGGGGGTCCEEEEE
T ss_pred cEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcc-cccCccc--cccccCH---HHHHHhcCCcEEEEc
Confidence 677778888873 344566667778898 99998654322 1110000 0000011 133444322233444
Q ss_pred --ChhhHHHHHHHHHHHhhhcCCcEEEEecCC
Q 044559 181 --NLEDAHELIDTAVSTALKESKPVYISVACN 210 (585)
Q Consensus 181 --~~~~~~~~l~~A~~~a~~~~GPV~i~iP~d 210 (585)
+++.+.+.+++|++.++...|||.|++-.-
T Consensus 597 G~D~~av~~a~~~A~~~~r~~~~PvlIe~~ty 628 (1113)
T 2xt6_A 597 GDDPEACAWVARLAVDFRQAFKKDVVIDMLCY 628 (1113)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeE
Confidence 888999999999998888899999998643
No 126
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=39.65 E-value=75 Score=31.18 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=57.4
Q ss_pred EEEcCCcccccchHHHHHHHHHHhCCceEeCCCC--ccccCCCCCCccccccCCCCCC-c--ccccccc-------cCCC
Q 044559 256 VLVAGPKMRVAKACNAFVELADACGYAVAVMPSA--KGLVPEHHPHFIGTYWGAVSTA-F--FSVGYSL-------LLKK 323 (585)
Q Consensus 256 vIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g--kg~~~~~hp~~~g~~~g~~~~~-~--~~~~~~~-------~~~~ 323 (585)
++-.|.|....+..+.+.+||+.+|.-|-+|-.. .|.+|. ...+|.. |..-.+ . ...|-+. ....
T Consensus 205 vVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqT-Gk~V~P~~lYiA~GISGAiQHlaGm~~s 281 (320)
T 1o97_D 205 IMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPK--SRQVGQS-GKVVGSCKLYVAMGISGSIQHMAGMKHV 281 (320)
T ss_dssp EEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTT-SBCCTTCSEEEEESCCCCHHHHHHHTTC
T ss_pred EEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeecC-ceEecccceEEEEeccCcHHHHhhcccC
Confidence 4445566666667799999999999988776321 355554 3455554 332233 2 1111111 1123
Q ss_pred ccEEEEcCCcce--eccCCccc-cccHHHHHHHHHHHhc
Q 044559 324 EKAVILQPDRVV--IANGPAFG-CVLMKDFLKALSKRLK 359 (585)
Q Consensus 324 ~~~i~vd~d~~~--i~~~~~~~-~~~~~~~l~~L~~~l~ 359 (585)
..+|-|+.|+.. +. ...|. -.|+-.++.+|.+.++
T Consensus 282 ~~IVAIN~D~~ApIF~-~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 282 PTIIAVNTDPGASIFT-IAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp SEEEEECSCTTCGGGG-TCSEEECSCHHHHHHHHHHHC-
T ss_pred CEEEEEeCCCCCCccc-ccCeEEeeeHHHHHHHHHHHHh
Confidence 346778888762 21 22232 2388999999988764
No 127
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=38.09 E-value=26 Score=33.56 Aligned_cols=139 Identities=18% Similarity=0.182 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCEEEecCCCC--hHHHHHhhhcCCCCeEEeCcc----------hHHHHHHHhHHhHhcCc-cEEEEeCC
Q 044559 49 HLARRLVQIGATDVFSVPGDF--NLTLLDHLIAEPGLNLIGCCN----------ELNAGYAADGYARSRGV-GACVVTFT 115 (585)
Q Consensus 49 ~i~~~L~~~GV~~vFg~PG~~--~~~l~~al~~~~~i~~i~~~~----------E~~A~~~A~Gyar~tg~-~v~~~tsG 115 (585)
+.++.+.+.|.+.|...-+.. .+=+.+.|. +..++|.... |.--+.+=.||.-..|. +++.=|++
T Consensus 41 Aai~ga~~~Ga~eV~V~DsHg~~~NLl~e~L~--~ra~li~G~prp~~Mm~Gld~sfD~v~fiGYHa~AG~~gvLaHT~~ 118 (274)
T 1hi9_A 41 YCIAEAFNSGCTEVLVNDSHSKMNNLMVEKLH--PEADLISGDVKPFSMVEGLDDTFRGALFLGYHARASTPGVMSHSMI 118 (274)
T ss_dssp HHHHHHHHTTCSEEEEEECSTTSCCSCTTTSC--TTSEEEEESCCTTGGGTTCCTTCSEEEEEEECCCTTSSSTTCCSSS
T ss_pred HHHHHHHHCCCeEEEEEccCCCcCCcChhHCC--cCeEEEeCCCCCcchhccccCCccEEEEeecCCCCCCCCccCCCCc
Confidence 457888999999999875433 223444443 3566665543 22122222355432223 44332222
Q ss_pred hhhH----------H-HHHHHHHhhhcCCcEEEEeCCCCCcccCCccccccccCCCChhHHHhhhcceeEEEEEeCChhh
Q 044559 116 VGGL----------S-VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLED 184 (585)
Q Consensus 116 pG~~----------n-~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~dq~~~~~~~tk~~~~v~~~~~ 184 (585)
-... . .+++.. |-.-++||+++|||......-+ .+. ++. ..+..=+.+.+++....+|+.
T Consensus 119 ~~~~~v~iNG~~~gE~~lna~~-Ag~~gVPV~lvsGDd~~~~e~~------~~~-P~~-~tv~vK~~~gr~aa~~~~p~~ 189 (274)
T 1hi9_A 119 FGVRHFYINDRPVGELGLNAYV-AGYYDVPVLMVAGDDRAAKEAE------ELI-PNV-TTAAVKQTISRSAVKCLSPAK 189 (274)
T ss_dssp TTEEEEEETTEEECHHHHHHHH-HHHTTCCEEEEEEEHHHHHHHH------TTS-TTC-EEEEEEEEEETTEEEECCHHH
T ss_pred cceEEEEECCEEcCHHHHHHHH-HhhcCCCEEEEecCHHHHHHHH------HhC-CCC-eEEEEeecccccccccCCHHH
Confidence 1111 1 222322 4567999999999854321100 000 000 001122233446677778999
Q ss_pred HHHHHHHHHHHhhh
Q 044559 185 AHELIDTAVSTALK 198 (585)
Q Consensus 185 ~~~~l~~A~~~a~~ 198 (585)
+.+.|+++.+.|..
T Consensus 190 a~~~I~~aa~~Al~ 203 (274)
T 1hi9_A 190 RGRLLTEKTAFALQ 203 (274)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988875
No 128
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=36.93 E-value=76 Score=27.60 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCC----EEEecCCCChHHHHH
Q 044559 49 HLARRLVQIGAT----DVFSVPGDFNLTLLD 75 (585)
Q Consensus 49 ~i~~~L~~~GV~----~vFg~PG~~~~~l~~ 75 (585)
.-.+.|+++|++ .+|-+||....|+.-
T Consensus 31 gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa 61 (158)
T 1di0_A 31 SFVAELAAKTGGSVEVEIFDVPGAYEIPLHA 61 (158)
T ss_dssp HHHHHHHHHHTTSEEEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHcCCCccceEEEECCcHHHHHHHH
Confidence 345889999986 699999999999884
No 129
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=36.34 E-value=76 Score=27.52 Aligned_cols=27 Identities=22% Similarity=0.360 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCC---EEEecCCCChHHHHH
Q 044559 49 HLARRLVQIGAT---DVFSVPGDFNLTLLD 75 (585)
Q Consensus 49 ~i~~~L~~~GV~---~vFg~PG~~~~~l~~ 75 (585)
.-.+.|+++|++ .+|-+||+...|+.-
T Consensus 34 ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa 63 (156)
T 1c2y_A 34 GALDTFKKYSVNEDIDVVWVPGAYELGVTA 63 (156)
T ss_dssp HHHHHHHHTTCCSCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHcCCCCceEEEECCcHHHHHHHH
Confidence 345889999985 899999999999875
No 130
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=35.02 E-value=44 Score=29.94 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeC
Q 044559 238 LEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVM 286 (585)
Q Consensus 238 ~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt 286 (585)
+.+.+++++++|.++++-+++.|.|.... ....+...-.++|.++...
T Consensus 30 ~~~~i~~~~~~i~~a~~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~ 77 (201)
T 3fxa_A 30 SEEALVKTVEKIAECTGKIVVAGCGTSGV-AAKKLVHSFNCIERPAVFL 77 (201)
T ss_dssp CHHHHHHHHHHHHHCSSCEEEECCTHHHH-HHHHHHHHHHHTTCCEEEC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEecHHHH-HHHHHHHHHHhcCCcEEEe
Confidence 35678999999999976788888887543 3444444445689888764
No 131
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=34.62 E-value=89 Score=30.42 Aligned_cols=98 Identities=22% Similarity=0.290 Sum_probs=54.5
Q ss_pred EEEcCCcccccchHHHHHHHHHHhCCceEeCCCC--ccccCCCCCCccccccCCCCCCc--cccccc-------ccCCCc
Q 044559 256 VLVAGPKMRVAKACNAFVELADACGYAVAVMPSA--KGLVPEHHPHFIGTYWGAVSTAF--FSVGYS-------LLLKKE 324 (585)
Q Consensus 256 vIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g--kg~~~~~hp~~~g~~~g~~~~~~--~~~~~~-------~~~~~~ 324 (585)
++-.|.|....+..+.+.+||+.+|.-|-+|-.. .|.+|. ...+|.. |..-.+. ...|-+ ......
T Consensus 195 vVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqT-Gk~V~P~lYiA~GISGAiQHlaGm~~s~ 271 (307)
T 1efp_A 195 VVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPN--DWQVGQT-GKVVAPELYVAVGISGAIQHLAGMKDSK 271 (307)
T ss_dssp EEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSSS-SBCCCCSEEEEESCCCCHHHHTTTTTCS
T ss_pred EEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeccC-CcccCCceEEEEeccCcHHHHhhhccCC
Confidence 4445566665566789999999999988776321 355554 3455543 2222221 111111 111223
Q ss_pred cEEEEcCCcce--eccCCccc-cccHHHHHHHHHHH
Q 044559 325 KAVILQPDRVV--IANGPAFG-CVLMKDFLKALSKR 357 (585)
Q Consensus 325 ~~i~vd~d~~~--i~~~~~~~-~~~~~~~l~~L~~~ 357 (585)
.+|-|+.|+.. +. ...|. -.|+..++.+|.+.
T Consensus 272 ~IVAIN~D~~ApIF~-~ADygiVgDl~~v~P~L~~~ 306 (307)
T 1efp_A 272 VIVAINKDEEAPIFQ-IADYGLVGDLFSVVPELTGK 306 (307)
T ss_dssp EEEEEESCTTCGGGG-TCSEEEESCHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCccc-ccCeEEeeeHHHHHHHHHhh
Confidence 46778888762 21 22222 23788999998765
No 132
>2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1
Probab=32.55 E-value=17 Score=30.22 Aligned_cols=33 Identities=30% Similarity=0.279 Sum_probs=27.7
Q ss_pred EcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChH
Q 044559 530 VFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSK 565 (585)
Q Consensus 530 V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
.++.+.|++|+++++ ..+|.+++|.++++....
T Consensus 37 ~eta~sLE~AIE~si---~~QP~vv~V~I~~d~l~~ 69 (131)
T 2iec_A 37 PGTAEEVAKCIERAA---LLQPCVIDARVEVDVSSE 69 (131)
T ss_dssp GGGHHHHHHHHHHHH---TTSTTEEEEEEEECCCGG
T ss_pred cccHHHHHHHHHHHH---hcCCeEEEEEecHHHhhc
Confidence 478999999999999 678888999998866543
No 133
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=32.13 E-value=79 Score=27.44 Aligned_cols=27 Identities=33% Similarity=0.735 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCC----EEEecCCCChHHHHH
Q 044559 49 HLARRLVQIGAT----DVFSVPGDFNLTLLD 75 (585)
Q Consensus 49 ~i~~~L~~~GV~----~vFg~PG~~~~~l~~ 75 (585)
.-.+.|+++|++ .+|-+||....|+.-
T Consensus 32 gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa 62 (157)
T 2obx_A 32 AFEAEMADIGGDRFAVDVFDVPGAYEIPLHA 62 (157)
T ss_dssp HHHHHHHHHHTTSEEEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHcCCCccceEEEECCcHHHHHHHH
Confidence 345889999986 599999999999874
No 134
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=32.07 E-value=1.1e+02 Score=26.57 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCC---EEEecCCCChHHHHH
Q 044559 47 GRHLARRLVQIGAT---DVFSVPGDFNLTLLD 75 (585)
Q Consensus 47 a~~i~~~L~~~GV~---~vFg~PG~~~~~l~~ 75 (585)
.+.-.+.|+++|++ .++-+||+...|+.-
T Consensus 18 l~gA~~~L~~~G~~~~i~~~~VPGafEiP~aa 49 (156)
T 2b99_A 18 ASIAIKKLKELSPNIKIIRKTVPGIKDLPVAC 49 (156)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCcHHHHHHHH
Confidence 36667899999985 348999999999874
No 135
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=31.50 E-value=45 Score=30.94 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=39.9
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhc----------ccHHHHHHHHHhCCceEEEEEeCCcce
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQ----------VTAQDVSTMLRCGQKTIIFLINNGGYT 493 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~----------~~~~eL~ta~~~~lpv~ivV~NN~~~~ 493 (585)
+.||+++...|+||+++.-++.. .+-.|+++.|+.+.. -+..++..++....+-.=+++||.+-.
T Consensus 24 pVR~itN~SSg~iG~aiA~~~~~----~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~~~~~~v~~~~~~~Dili~~Aav~ 98 (226)
T 1u7z_A 24 PVRYISDHSSGKMGFAIAAAAAR----RGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVA 98 (226)
T ss_dssp SSEEEEECCCSHHHHHHHHHHHH----TTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred ceeeccCCCccHHHHHHHHHHHH----CCCEEEEEECCcccccCCCCeEEccCcHHHHHHHHHHhcCCCCEEEECCccc
Confidence 57799999989998887766543 345677777754321 135666555543333233566776643
No 136
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=31.49 E-value=50 Score=30.56 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcC--CCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCCcc
Q 044559 239 EAAVEAAAEFLNKAV--KPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKG 291 (585)
Q Consensus 239 ~~~v~~~~~~L~~a~--rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg 291 (585)
+.++-++++++.+.+ ||.+|+|--+.--++.+.=.+|++..++|.++.-.-||
T Consensus 158 PTAL~~Lleli~~~~~~rPalVIG~PVGFVgAaESK~~L~~~~~vP~I~~~GrkG 212 (229)
T 4au1_A 158 PTALFHLLNMLEDPACPRPAAIIGCPVGFIGAAESKAALAVANPVPWVIVEGRLG 212 (229)
T ss_dssp HHHHHHHHHHTTSTTSCCCSEEEECCCCSSSHHHHHHHHHHHCCSSEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEcCCCccChHHHHHHHHhCCCCCEEEEecCCC
Confidence 456778889987643 89999887665445666666777778999998765554
No 137
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=29.93 E-value=50 Score=30.81 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=41.1
Q ss_pred CCeeeecCCcccccchhHHHHhhhhcCCCCcEEEEEccchhcc------------cHHHHHHHHHhCCceEEEEEeCCcc
Q 044559 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQV------------TAQDVSTMLRCGQKTIIFLINNGGY 492 (585)
Q Consensus 425 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~r~vv~v~GDGsf~~------------~~~eL~ta~~~~lpv~ivV~NN~~~ 492 (585)
+.||+++...|.||+++.-++-. .+-.|+++.|..+..- +..|+..+++...+-.=+++||.+-
T Consensus 19 pVR~ItN~SSG~mG~aiA~~~~~----~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~~~~~~Dili~aAAv 94 (232)
T 2gk4_A 19 SVRSITNHSTGHLGKIITETLLS----AGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQERVQDYQVLIHSMAV 94 (232)
T ss_dssp SSEEEEECCCCHHHHHHHHHHHH----TTCEEEEEECTTSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECSBC
T ss_pred ceeeccCCCCCHHHHHHHHHHHH----CCCEEEEEeCCccccccCCCCeEEEEHhHHHHHHHHHHHhcCCCCEEEEcCcc
Confidence 46799999999999887665533 3557888888766421 4667666665433322255666653
No 138
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=29.34 E-value=1.4e+02 Score=26.51 Aligned_cols=101 Identities=11% Similarity=0.010 Sum_probs=51.8
Q ss_pred cccchhHHHHhhhhcC-CCCcEEEEEccchhccc-HHHH-HHHHHhCCceEEEEEeCCcceee--------eeecCCCc-
Q 044559 436 SIGWSVGATLGYAQSV-PEKRVIACIGDGSFQVT-AQDV-STMLRCGQKTIIFLINNGGYTIE--------VEIHDGPY- 503 (585)
Q Consensus 436 ~mG~~lpaAiGaalA~-p~r~vv~v~GDGsf~~~-~~eL-~ta~~~~lpv~ivV~NN~~~~~~--------~~~~~~~~- 503 (585)
.++.+|-.|+-.-... ..+++|.++.||.-... ..+. ..+.+.++++.+|-+-+....-. .....+..
T Consensus 93 ~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~ 172 (218)
T 3ibs_A 93 AIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVI 172 (218)
T ss_dssp CHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBC
T ss_pred cHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEe
Confidence 4555555444322111 24578999999977654 4444 33344666666665554321110 00000100
Q ss_pred -CCCCCCChHHHHHHhcCCCCCceeEEEcC-HHHHHHHHH
Q 044559 504 -NVIKNWNYTGLVDAIHNGEGKCWTTKVFC-EEELIEAIE 541 (585)
Q Consensus 504 -~~~~~~d~~~la~a~G~~~~~~~~~~V~~-~~eL~~aL~ 541 (585)
.....--+..+|+.-|. .++.+.+ .+.+...++
T Consensus 173 ~~~~~~~~L~~iA~~~gG-----~~~~~~~~~~~~~~~~~ 207 (218)
T 3ibs_A 173 VTRLNEGMCQEIAKDGKG-----IYVRVDNSNSAQKAISQ 207 (218)
T ss_dssp EECCCHHHHHHHHHHTEE-----EEEEECSSSHHHHHHHH
T ss_pred EecCCHHHHHHHHHhcCC-----EEEECCCChHHHHHHHH
Confidence 01112236788998888 8999987 445544443
No 139
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=28.87 E-value=66 Score=26.00 Aligned_cols=31 Identities=10% Similarity=-0.207 Sum_probs=22.5
Q ss_pred CChHHHHHHhcCCCCCceeEEEcCHHHHHHHHHhhc
Q 044559 509 WNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENAT 544 (585)
Q Consensus 509 ~d~~~la~a~G~~~~~~~~~~V~~~~eL~~aL~~a~ 544 (585)
.|...-.+..|+ +++.|++++|++++|+++.
T Consensus 12 ~dtv~GFrLaGi-----~~~~v~~~ee~~~~~~~l~ 42 (109)
T 2d00_A 12 PETAQGFRLAGL-----EGYGASSAEEAQSLLETLV 42 (109)
T ss_dssp HHHHHHHHHTTS-----EEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHh
Confidence 455666677777 7777888888888877765
No 140
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=28.42 E-value=1.6e+02 Score=27.04 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCC---eEEeCc----chHHHHHHH----hHH-------hHhcC
Q 044559 46 LGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-PGL---NLIGCC----NELNAGYAA----DGY-------ARSRG 106 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~-~~i---~~i~~~----~E~~A~~~A----~Gy-------ar~tg 106 (585)
.++.|++.+.+.+-=++||+=++. .+...+... ..+ +.+... +...+...+ .|| ...+.
T Consensus 31 a~~~l~~~i~~~~~I~i~G~G~S~--~~A~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~~~g~~~~~~~~~~~~~ 108 (243)
T 3cvj_A 31 GAHLVSEAVMNGGRFYVFGSGHSH--MIAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLKLHQVTN 108 (243)
T ss_dssp HHHHHHHHHHTTCCEEEEESGGGH--HHHHHTSSSTTCBTTEEECCCGGGSSSSSTTHHHHHTTCTTHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHCCCEEEEEcCcHHH--HHHHHHHHHhccccccCcccchhhhccCCchhhhhhhhcccHHHHHHHHhcCCC
Confidence 456667777778877888885544 344444321 121 221111 111110111 111 11222
Q ss_pred ccEEEEeCChhh-HHHHHHHHHhhhcCCcEEEEeCCC
Q 044559 107 VGACVVTFTVGG-LSVLNAIAGAYSENLPLICIVGGP 142 (585)
Q Consensus 107 ~~v~~~tsGpG~-~n~~~~l~~A~~~~~PllvI~g~~ 142 (585)
.-++++.|..|- .+.+.++..|...+.++|.||+..
T Consensus 109 ~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~ 145 (243)
T 3cvj_A 109 KDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMK 145 (243)
T ss_dssp TCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 345565566664 568888889999999999999863
No 141
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=28.26 E-value=3.5e+02 Score=24.84 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=53.8
Q ss_pred CccCCCCCcHHHHHHHHHHHc--CCC-----EEEecCC---C-----ChHHHHHhhhcCCCCeEEeC----cchHHHHHH
Q 044559 37 PLVNPSESTLGRHLARRLVQI--GAT-----DVFSVPG---D-----FNLTLLDHLIAEPGLNLIGC----CNELNAGYA 97 (585)
Q Consensus 37 ~~~~~~~~~~a~~i~~~L~~~--GV~-----~vFg~PG---~-----~~~~l~~al~~~~~i~~i~~----~~E~~A~~~ 97 (585)
+.+......++..+++.|.+. |-+ +|.-+-| . +...+.+++.+.++++++.. .+...+.-+
T Consensus 106 ~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 185 (293)
T 3l6u_A 106 SSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERV 185 (293)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHH
T ss_pred eEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHH
Confidence 344455566888888888884 766 5544433 2 23456677766557776532 122333223
Q ss_pred HhHHhHhcCc-cEEEEeCChhhHHHHHHHHHhhhc
Q 044559 98 ADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSE 131 (585)
Q Consensus 98 A~Gyar~tg~-~v~~~tsGpG~~n~~~~l~~A~~~ 131 (585)
+.-+-+.... -++++.+..-+..++.++.++-..
T Consensus 186 ~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 186 MRQVIDSGIPFDAVYCHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCCEEEECCchHHHHHHHHHHhCCCC
Confidence 3333233334 567777776666777777766544
No 142
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=27.94 E-value=55 Score=27.50 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=22.0
Q ss_pred EEEcCCcccccchHHHHHHHHHHhCCceEeCCCC
Q 044559 256 VLVAGPKMRVAKACNAFVELADACGYAVAVMPSA 289 (585)
Q Consensus 256 vIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~g 289 (585)
+|+.|+.. ..+++.++|++.|+||+.|...
T Consensus 78 iIlt~g~~----~~~~i~~~A~~~~ipvl~t~~~ 107 (139)
T 2ioj_A 78 LILTGNLE----PVQLVLTKAEERGVPVILTGHD 107 (139)
T ss_dssp EEEETTCC----CCHHHHHHHHHHTCCEEECSSC
T ss_pred EEEcCCCC----CCHHHHHHHHHCCCeEEEECCC
Confidence 45555433 4577889999999999998753
No 143
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=27.88 E-value=1.8e+02 Score=32.96 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=61.5
Q ss_pred HHHHhHHhHh---c-----Cc-cEEEEeCChhhH-H---HHHHHHHhhhcCCc---EEEEeCCCCCcccCC-cccccccc
Q 044559 95 GYAADGYARS---R-----GV-GACVVTFTVGGL-S---VLNAIAGAYSENLP---LICIVGGPNSNDYGT-NRILHHTI 157 (585)
Q Consensus 95 ~~~A~Gyar~---t-----g~-~v~~~tsGpG~~-n---~~~~l~~A~~~~~P---llvI~g~~~~~~~~~-~~~~~~~~ 157 (585)
.-+|.|+|++ . |. .++++..|=|++ + +.-++..|..-+.| +|+|.-+.... ... .. ....
T Consensus 327 ~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~-ist~~~--~~~~ 403 (933)
T 2jgd_A 327 SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVG-FTTSNP--LDAR 403 (933)
T ss_dssp HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------
T ss_pred cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCcc-ccCCCH--Hhcc
Confidence 4556666655 2 23 577777787775 2 45567778788999 88887654322 111 10 0000
Q ss_pred CCCChhHHHhhhcce--eEEEEEeCChhhHHHHHHHHHHHhhhcCCcEEEEecC
Q 044559 158 GLPDFSQELRCFQTV--TCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVAC 209 (585)
Q Consensus 158 ~~~~~~dq~~~~~~~--tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~i~iP~ 209 (585)
. ..+..+.++.+ ....+.=.+++.+.+.+++|...+....+|+.|++-.
T Consensus 404 ~---~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~t 454 (933)
T 2jgd_A 404 S---TPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVC 454 (933)
T ss_dssp ------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred c---chhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 0 00112233332 2233334567778888888888887778999998754
No 144
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=27.84 E-value=1.7e+02 Score=25.31 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHh----hhcCCCCeEEeCc---chHHHHHHHhHHhHhcCccEEEEeCChh-h
Q 044559 47 GRHLARRLVQIGATDVFSVPGDFNLTLLDH----LIAEPGLNLIGCC---NELNAGYAADGYARSRGVGACVVTFTVG-G 118 (585)
Q Consensus 47 a~~i~~~L~~~GV~~vFg~PG~~~~~l~~a----l~~~~~i~~i~~~---~E~~A~~~A~Gyar~tg~~v~~~tsGpG-~ 118 (585)
-+.+++.|.+..-=++||+-++. .+... |.+ -++.++... ++.. .-....+..-++++.|-.| .
T Consensus 29 l~~~~~~i~~a~~I~i~G~G~S~--~~a~~~~~~l~~-~g~~~~~~~~~~~~~~-----~~~~~~~~~d~~i~iS~sG~t 100 (187)
T 3sho_A 29 IEAAVEAICRADHVIVVGMGFSA--AVAVFLGHGLNS-LGIRTTVLTEGGSTLT-----ITLANLRPTDLMIGVSVWRYL 100 (187)
T ss_dssp HHHHHHHHHHCSEEEEECCGGGH--HHHHHHHHHHHH-TTCCEEEECCCTHHHH-----HHHHTCCTTEEEEEECCSSCC
T ss_pred HHHHHHHHHhCCEEEEEecCchH--HHHHHHHHHHHh-cCCCEEEecCCchhHH-----HHHhcCCCCCEEEEEeCCCCC
Confidence 45678888888655666664433 33333 233 345544433 3321 1112333344555555566 4
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCC
Q 044559 119 LSVLNAIAGAYSENLPLICIVGGPN 143 (585)
Q Consensus 119 ~n~~~~l~~A~~~~~PllvI~g~~~ 143 (585)
.+.+..+..|...+.|+|.||+...
T Consensus 101 ~~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 101 RDTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4677888889999999999998643
No 145
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=27.15 E-value=32 Score=27.67 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=29.0
Q ss_pred CCCEEEcCCcccccchHHHHHHHHHHhCCceEeC
Q 044559 253 VKPVLVAGPKMRVAKACNAFVELADACGYAVAVM 286 (585)
Q Consensus 253 ~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt 286 (585)
+|.++++|.|...+-..+.+++.++..|+++-..
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~ 37 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIE 37 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEE
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEE
Confidence 4689999999988877889999999999997443
No 146
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=24.94 E-value=4.8e+02 Score=29.36 Aligned_cols=175 Identities=14% Similarity=0.066 Sum_probs=87.7
Q ss_pred eEE-eCcchHHH-H---HHHhHHhHhcC-c-cEEEEeCChhhHHHHHHHHHh-hhcCCcEEEEeCCCCCcccCCcccccc
Q 044559 84 NLI-GCCNELNA-G---YAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGA-YSENLPLICIVGGPNSNDYGTNRILHH 155 (585)
Q Consensus 84 ~~i-~~~~E~~A-~---~~A~Gyar~tg-~-~v~~~tsGpG~~n~~~~l~~A-~~~~~PllvI~g~~~~~~~~~~~~~~~ 155 (585)
|++ ....|++| + .+|.|||...+ . .+++..+.=+..-+.--+..+ .+.+.++++. +.......+.+...||
T Consensus 563 R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~-~~~~~~~~g~dG~tHq 641 (886)
T 2qtc_A 563 QILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIG-GTSGRTTLNGEGLQHE 641 (886)
T ss_dssp CBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCCEEEE-ESCSTTTSTTTCTTTC
T ss_pred ceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHHhcCCEEEE-EecCcccCCCCCCccC
Confidence 444 47789997 4 68999998863 4 665443322222233333332 3445565553 3322222222222332
Q ss_pred ccCCCChhHHHhhhcceeE-EEEEeCChhhHHHHHHHHHHHhhhcCCc----EEEEecCCCCCCCCCCCCCCCCCCcCCC
Q 044559 156 TIGLPDFSQELRCFQTVTC-YQAVVNNLEDAHELIDTAVSTALKESKP----VYISVACNLPAIPHPTFSREPVPFSLSP 230 (585)
Q Consensus 156 ~~~~~~~~dq~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~GP----V~i~iP~dv~~~~~~~~~~~~~~~~~~~ 230 (585)
-..+..+++.+.. ..+...++.++..+++.|++.. .|| |+|.+|..-+....+. . +
T Consensus 642 ------~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~---~gP~~e~v~i~~~r~~~~~~~p~---------~-~ 702 (886)
T 2qtc_A 642 ------DGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERM---YGEKQENVYYYITTLNENYHMPA---------M-P 702 (886)
T ss_dssp ------CSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHH---HSTTCCCCEEEEECCSCCBCCCC---------C-C
T ss_pred ------CcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhc---CCCCCceEEEEEeCCccccCCCC---------C-C
Confidence 1123557777643 3445556777777777777543 368 9999986421100010 0 0
Q ss_pred CCCChhhHHHHHHHHHHHHHhc---CCCEEEcCCcccccchHHHHHHHHHHhCCce
Q 044559 231 KLSNEMGLEAAVEAAAEFLNKA---VKPVLVAGPKMRVAKACNAFVELADACGYAV 283 (585)
Q Consensus 231 ~~~~~~~~~~~v~~~~~~L~~a---~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv 283 (585)
. . ....+-.-+..|... +.-+.|++.|..-..+.++...|++.+|+-+
T Consensus 703 ~----~-~~~~~~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a 753 (886)
T 2qtc_A 703 E----G-AEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGS 753 (886)
T ss_dssp T----T-CHHHHHHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEE
T ss_pred c----c-hhhhccCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCce
Confidence 0 0 011111111223332 1346677777765567777777887767654
No 147
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=24.84 E-value=61 Score=25.11 Aligned_cols=70 Identities=10% Similarity=0.169 Sum_probs=42.0
Q ss_pred cHHHHHHHH-----HhCCceEEEEEeCCcceee--ee-----------ecCCCcCCCCCCChHHHHHHhcCCCCCceeEE
Q 044559 468 TAQDVSTML-----RCGQKTIIFLINNGGYTIE--VE-----------IHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTK 529 (585)
Q Consensus 468 ~~~eL~ta~-----~~~lpv~ivV~NN~~~~~~--~~-----------~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~ 529 (585)
+.|||-... .|+.-++++|.++..|.-. +. +++..-+.+ -.|..-.+--|. ....
T Consensus 34 spqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvliiiydqdqnrl--eefsrevrrrgf-----evrt 106 (134)
T 2l69_A 34 SPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQDQNRL--EEFSREVRRRGF-----EVRT 106 (134)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSCHHHH--HHHHHHHHHTTC-----CEEE
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCchhHH--HHHHHHHHhcCc-----eEEE
Confidence 466664443 3777888888888888641 00 011111111 234444555666 7788
Q ss_pred EcCHHHHHHHHHhhc
Q 044559 530 VFCEEELIEAIENAT 544 (585)
Q Consensus 530 V~~~~eL~~aL~~a~ 544 (585)
|++++++...|++.+
T Consensus 107 vtspddfkkslerli 121 (134)
T 2l69_A 107 VTSPDDFKKSLERLI 121 (134)
T ss_dssp ESSHHHHHHHHHHHH
T ss_pred ecChHHHHHHHHHHH
Confidence 899999998888765
No 148
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=24.52 E-value=95 Score=28.02 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHh------h-hcCCCCeEEeCc--chHHHH--------HHHhHHh-HhcCc
Q 044559 46 LGRHLARRLVQIGATDVFSVPGDFNLTLLDH------L-IAEPGLNLIGCC--NELNAG--------YAADGYA-RSRGV 107 (585)
Q Consensus 46 ~a~~i~~~L~~~GV~~vFg~PG~~~~~l~~a------l-~~~~~i~~i~~~--~E~~A~--------~~A~Gya-r~tg~ 107 (585)
.++.+++.|.+.+-=++||+=++......-+ + ....+++.+... ++..+. .+...+. ..+..
T Consensus 53 ~~~~i~~~l~~~~~I~i~G~G~S~~~A~~~a~~l~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (212)
T 2i2w_A 53 AAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREG 132 (212)
T ss_dssp HHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHHHHCTTSSSCSEEECCCTTCGGGGSCCCSCSSHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHHhhhcccCCCCeEEecCChHHhhHhhccCCHHHHHHHHHHhcCCCC
Confidence 3455556677777667777755544333222 1 112355544433 221110 0112222 23333
Q ss_pred cEEEEeCChh-hHHHHHHHHHhhhcCCcEEEEeCCCCC
Q 044559 108 GACVVTFTVG-GLSVLNAIAGAYSENLPLICIVGGPNS 144 (585)
Q Consensus 108 ~v~~~tsGpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 144 (585)
-++++.|..| ..+.+.++..|...+.++|.||+....
T Consensus 133 DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s 170 (212)
T 2i2w_A 133 DVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGG 170 (212)
T ss_dssp CEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4455445555 456888899999999999999986443
No 149
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle ST genomics center for infectious disease; 1.80A {Brucella abortus} SCOP: c.23.17.1
Probab=24.04 E-value=95 Score=28.37 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcC-CCEEEcCCcccccchHHHHHHHHHH-hCCceEeCCCCcc
Q 044559 239 EAAVEAAAEFLNKAV-KPVLVAGPKMRVAKACNAFVELADA-CGYAVAVMPSAKG 291 (585)
Q Consensus 239 ~~~v~~~~~~L~~a~-rpvIi~G~g~~~~~a~~~l~~lae~-~~~Pv~tt~~gkg 291 (585)
+..+-++++++.+.+ ||.+|+|--+.--++.+.=.+|.+. .++|.++.-.-||
T Consensus 141 PTAL~~Lleli~~g~~~PalVIG~PVGFV~aaESKe~L~~~~~~vP~I~~~GrkG 195 (212)
T 3e7d_A 141 PTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYVIVRGRRG 195 (212)
T ss_dssp HHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEECSSCC
T ss_pred HHHHHHHHHHHHcCCCCcceEEEeCCCccChHHHHHHHHhcCCCCCEEEEecCCC
Confidence 456788899998765 9999988766544565555556663 7999998765554
No 150
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=23.12 E-value=1.4e+02 Score=23.30 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=29.0
Q ss_pred EEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHHHHhhh
Q 044559 528 TKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 528 ~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~ 576 (585)
+.|.+.+++.+.|.++ .++++||+...+.=..=..+...++++.+
T Consensus 3 ~~i~~~~~f~~~l~~~----~~k~vvv~F~a~wC~~C~~~~p~~~~~~~ 47 (105)
T 3zzx_A 3 YQVKDQEDFTKQLNEA----GNKLVVIDFYATWCGPCKMIAPKLEELSQ 47 (105)
T ss_dssp EECCSHHHHHHHHHHT----TTSEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhc----CCCEEEEEEECCCCCCccCCCcchhhhhh
Confidence 3577888888888764 46788888887654433344444444443
No 151
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=22.96 E-value=1.4e+02 Score=28.83 Aligned_cols=54 Identities=19% Similarity=0.141 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCCccccCCCCCC
Q 044559 244 AAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPH 299 (585)
Q Consensus 244 ~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~ 299 (585)
++++.|....+..+++|... +.....+..++++.++|++........+....++
T Consensus 65 ~~a~~li~~~~v~~i~g~~~--s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~ 118 (353)
T 4gnr_A 65 SVTTNLVTQSKVSAVVGPAT--SGATAAAVANATKAGVPLISPSATQDGLTKGQDY 118 (353)
T ss_dssp HHHHHHHHTSCCSEEECCCS--HHHHHHHHHHHHHTTCCEEESSCCCTTTTTTCTT
T ss_pred HHHHHHHhhCCceEEecccc--CcccceehhhhhccCcceEeecccccccccCCcc
Confidence 34444445567777777554 4467788899999999999876554444444444
No 152
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=22.90 E-value=91 Score=27.44 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=47.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHH-HHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhH
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLT-LLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 119 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~-l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~ 119 (585)
.+++...+-.++.|++.||.|-.++-|-|=+| -+..+.+. ++..|.-|+++ +-|..
T Consensus 22 ~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~---------------------a~~~g~~ViIa--~AG~a 78 (173)
T 4grd_A 22 SSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEK---------------------ARERGLRAIIA--GAGGA 78 (173)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHH---------------------HTTTTCSEEEE--EEESS
T ss_pred HhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHH---------------------HHhcCCeEEEE--ecccc
Confidence 46678889999999999999999998866432 22222110 11122223443 44566
Q ss_pred HHHHHHHHhhhcCCcEEEEe
Q 044559 120 SVLNAIAGAYSENLPLICIV 139 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~ 139 (585)
+.++|+..+. ...|||-+-
T Consensus 79 ahLpgvvA~~-t~~PVIgVP 97 (173)
T 4grd_A 79 AHLPGMLAAK-TTVPVLGVP 97 (173)
T ss_dssp CCHHHHHHHH-CCSCEEEEE
T ss_pred ccchhhheec-CCCCEEEEE
Confidence 7788887664 477888774
No 153
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=22.24 E-value=1.7e+02 Score=25.38 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.0
Q ss_pred HHHHHHH-cCCC----EEEecCCCChHHHHH
Q 044559 50 LARRLVQ-IGAT----DVFSVPGDFNLTLLD 75 (585)
Q Consensus 50 i~~~L~~-~GV~----~vFg~PG~~~~~l~~ 75 (585)
-.+.|++ +|++ .+|-+||....|+.-
T Consensus 39 a~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa 69 (159)
T 1kz1_A 39 AVETMIEKHDVKLENIDIESVPGSWELPQGI 69 (159)
T ss_dssp HHHHHHHHHCCCGGGEEEEECSSGGGHHHHH
T ss_pred HHHHHHHHcCCCccceEEEECCcHHHHHHHH
Confidence 3578888 9986 599999999999875
No 154
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=22.06 E-value=4.4e+02 Score=23.78 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=53.0
Q ss_pred cCCCCCcHHHHHHHHHHHc----CCCEEEecCCCC--------hHHHHHhhhcCCCCeEEeCc----chHHHHHHHhHHh
Q 044559 39 VNPSESTLGRHLARRLVQI----GATDVFSVPGDF--------NLTLLDHLIAEPGLNLIGCC----NELNAGYAADGYA 102 (585)
Q Consensus 39 ~~~~~~~~a~~i~~~L~~~----GV~~vFg~PG~~--------~~~l~~al~~~~~i~~i~~~----~E~~A~~~A~Gya 102 (585)
+......++..+++.|.+. |-+++.-+-|.. ...+.+++.+.+++++.... +...+.-++.-+-
T Consensus 103 V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 182 (276)
T 3ksm_A 103 VATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLL 182 (276)
T ss_dssp EECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHH
T ss_pred EccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHH
Confidence 4455567889999999999 999887776643 23466677655577765322 1222222223222
Q ss_pred HhcCc-cEEEEeCChhhHHHHHHHHHh
Q 044559 103 RSRGV-GACVVTFTVGGLSVLNAIAGA 128 (585)
Q Consensus 103 r~tg~-~v~~~tsGpG~~n~~~~l~~A 128 (585)
+.... -++++.+...+..++.++.++
T Consensus 183 ~~~~~~~ai~~~~d~~a~g~~~al~~~ 209 (276)
T 3ksm_A 183 KETPTIDGLFTPNESTTIGALVAIRQS 209 (276)
T ss_dssp HHCSCCCEEECCSHHHHHHHHHHHHHT
T ss_pred HhCCCceEEEECCchhhhHHHHHHHHc
Confidence 33334 566666665555566666554
No 155
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=21.46 E-value=54 Score=30.97 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCCEEEcCCcccc
Q 044559 240 AAVEAAAEFLNKAVKPVLVAGPKMRV 265 (585)
Q Consensus 240 ~~v~~~~~~L~~a~rpvIi~G~g~~~ 265 (585)
+.+++++++|.++++.+++.|.|...
T Consensus 3 ~~i~~l~~~l~~a~~ivv~tGAGiS~ 28 (253)
T 1ma3_A 3 DEIRKAAEILAKSKHAVVFTGAGISA 28 (253)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGSC
T ss_pred HHHHHHHHHHHhCCcEEEEEchhhhH
Confidence 45788999999999999999999864
No 156
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=21.28 E-value=93 Score=27.63 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=47.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHH-HHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhH
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLT-LLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 119 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~-l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~ 119 (585)
.+++..++-.++.|+++||.|-+++-+-|=+| -+..+.+. ++..|.-|+++ +-|..
T Consensus 31 ~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~---------------------a~~~g~~ViIa--~AG~a 87 (182)
T 1u11_A 31 QSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYART---------------------AAERGLNVIIA--GAGGA 87 (182)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHH---------------------TTTTTCCEEEE--EEESS
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHH---------------------HHhCCCcEEEE--ecCch
Confidence 45677889999999999999999998865332 22222110 11112223333 44566
Q ss_pred HHHHHHHHhhhcCCcEEEEeC
Q 044559 120 SVLNAIAGAYSENLPLICIVG 140 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g 140 (585)
+.++|+..+.. ..|||-+--
T Consensus 88 a~LpgvvA~~t-~~PVIgVP~ 107 (182)
T 1u11_A 88 AHLPGMCAAWT-RLPVLGVPV 107 (182)
T ss_dssp CCHHHHHHHHC-SSCEEEEEE
T ss_pred hhhHHHHHhcc-CCCEEEeeC
Confidence 77777776654 678877653
No 157
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=21.12 E-value=89 Score=27.42 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=47.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHH-HHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhH
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLT-LLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 119 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~-l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~ 119 (585)
.+++..++-.++.|+++||.+-.++-+-+=+| -+..+.+. ++..|.-|+++ +-|..
T Consensus 21 ~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~---------------------a~~~g~~ViIa--~AG~a 77 (170)
T 1xmp_A 21 TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAET---------------------ARERGLKVIIA--GAGGA 77 (170)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHH---------------------TTTTTCCEEEE--EEESS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHH---------------------HHhCCCcEEEE--ECCch
Confidence 35667888999999999999999998865332 22222210 11112223443 44566
Q ss_pred HHHHHHHHhhhcCCcEEEEeC
Q 044559 120 SVLNAIAGAYSENLPLICIVG 140 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g 140 (585)
+.++++..+.. ..|||-+--
T Consensus 78 a~LpgvvA~~t-~~PVIgVP~ 97 (170)
T 1xmp_A 78 AHLPGMVAAKT-NLPVIGVPV 97 (170)
T ss_dssp CCHHHHHHTTC-CSCEEEEEE
T ss_pred hhhHHHHHhcc-CCCEEEeeC
Confidence 77888876654 678877653
No 158
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=20.96 E-value=1.1e+02 Score=29.60 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=47.0
Q ss_pred CCCcHHHHHHHHHHH--cCCCEEEecCCC-----ChHHHHHhhhcCCCCeEEeCcchH-------HHHHHHhHHhHhcCc
Q 044559 42 SESTLGRHLARRLVQ--IGATDVFSVPGD-----FNLTLLDHLIAEPGLNLIGCCNEL-------NAGYAADGYARSRGV 107 (585)
Q Consensus 42 ~~~~~a~~i~~~L~~--~GV~~vFg~PG~-----~~~~l~~al~~~~~i~~i~~~~E~-------~A~~~A~Gyar~tg~ 107 (585)
.+-+.+..+++.+.+ .|+.++.++=|. ....+++.|.+++..+.|...-|. .+-|+........+|
T Consensus 160 qSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~~f~~~~~~~~~~K 239 (305)
T 2fp4_A 160 RSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSK 239 (305)
T ss_dssp SCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHHHHHHHSCSTTCC
T ss_pred cchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHHHHHHHHHHhcCCC
Confidence 335666778888877 566778887655 356788888888888888766553 556666543212245
Q ss_pred cEEEEeCC
Q 044559 108 GACVVTFT 115 (585)
Q Consensus 108 ~v~~~tsG 115 (585)
.|++.-+|
T Consensus 240 PVv~~k~G 247 (305)
T 2fp4_A 240 PVVSFIAG 247 (305)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEec
Confidence 55544444
No 159
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=20.92 E-value=3.5e+02 Score=26.58 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEe
Q 044559 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIG 87 (585)
Q Consensus 48 ~~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~ 87 (585)
+..++.|.+.|++-||+.......++.+...+.|+++++.
T Consensus 76 ~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~ 115 (356)
T 3s99_A 76 ERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEH 115 (356)
T ss_dssp HHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEE
Confidence 4567788888999888875555555555444445555553
No 160
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=20.82 E-value=1e+02 Score=27.32 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=48.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEecCCCChHH-HHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChhhH
Q 044559 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLT-LLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 119 (585)
Q Consensus 41 ~~~~~~a~~i~~~L~~~GV~~vFg~PG~~~~~-l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~ 119 (585)
.+++...+-.++.|+++||.|-.++-+-+=+| .+..+.+. ++..|.-|+++ |.|..
T Consensus 32 ~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~---------------------a~~~g~~ViIa--~AG~a 88 (181)
T 4b4k_A 32 TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAET---------------------ARERGLKVIIA--GAGGA 88 (181)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHH---------------------TTTTTCCEEEE--EECSS
T ss_pred HhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHH---------------------HHhcCceEEEE--ecccc
Confidence 45677889999999999999999888866433 22222111 11122234443 45567
Q ss_pred HHHHHHHHhhhcCCcEEEEeC
Q 044559 120 SVLNAIAGAYSENLPLICIVG 140 (585)
Q Consensus 120 n~~~~l~~A~~~~~PllvI~g 140 (585)
+.++|+..+ ....|||-+--
T Consensus 89 ahLpGvvAa-~T~~PVIGVPv 108 (181)
T 4b4k_A 89 AHLPGMVAA-KTNLPVIGVPV 108 (181)
T ss_dssp CCHHHHHHT-TCCSCEEEEEC
T ss_pred ccchhhHHh-cCCCCEEEEec
Confidence 788888866 45668887654
No 161
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.70 E-value=1.1e+02 Score=26.75 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCC
Q 044559 238 LEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP 287 (585)
Q Consensus 238 ~~~~v~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~ 287 (585)
+.+.+++++++|.+++| +++.|.|... .....+.....++|.++..-.
T Consensus 25 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~-~~a~~~~~~l~~~g~~~~~~~ 72 (187)
T 3sho_A 25 QPEAIEAAVEAICRADH-VIVVGMGFSA-AVAVFLGHGLNSLGIRTTVLT 72 (187)
T ss_dssp CHHHHHHHHHHHHHCSE-EEEECCGGGH-HHHHHHHHHHHHTTCCEEEEC
T ss_pred CHHHHHHHHHHHHhCCE-EEEEecCchH-HHHHHHHHHHHhcCCCEEEec
Confidence 35678999999999875 6777777643 344555555567888886543
No 162
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=20.24 E-value=77 Score=31.23 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCEEEcCCcccccchHHHHHHHHHHhCCceEeCCCCccccCCCCCCcc
Q 044559 243 EAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFI 301 (585)
Q Consensus 243 ~~~~~~L~~a~rpvIi~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~gkg~~~~~hp~~~ 301 (585)
.++++.|...++..+|+|... +.....+..++++.++|+++...+-..+.+.+|+++
T Consensus 61 ~~~a~~Li~~d~V~aiiG~~~--S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~f 117 (371)
T 4f06_A 61 KALAQELIVKEKVQYLAGLYF--TPNAMAVAPLLQEAKVPMVVMNAATSSITEKSPYIV 117 (371)
T ss_dssp HHHHHHHHHTSCCSEEEECCS--HHHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTTEE
T ss_pred HHHHHHHHhcCCCEEEEeccc--ccchHHHHHHHHhhcCCccccccccchhcccCCcce
Confidence 344555555677878887654 457788889999999999987655444444455543
No 163
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=20.24 E-value=3e+02 Score=23.62 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcC-CCEEEecCCCChHH--HHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcCccEEEEeCChh-hHHH
Q 044559 46 LGRHLARRLVQIG-ATDVFSVPGDFNLT--LLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVG-GLSV 121 (585)
Q Consensus 46 ~a~~i~~~L~~~G-V~~vFg~PG~~~~~--l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG-~~n~ 121 (585)
--+.+++.|.+.+ -=++||+-++.... +...|.+ -++.++...+.. ... .-....+..-++++.|..| ..+.
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~-~~~--~~~~~~~~~d~vI~iS~sG~t~~~ 112 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFAS-TGTPSFFVHPGE-AAH--GDLGMVTPQDVVIAISNSGESSEI 112 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHT-TTCCEEECCTTH-HHH--HTSTTCCTTCEEEEECSSSCCHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHh-cCceEEEeCchH-Hhh--hhhccCCCCCEEEEEeCCCCCHHH
Confidence 4566788888875 55677765444322 1222332 355554443211 111 1112233334555555666 4467
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCC
Q 044559 122 LNAIAGAYSENLPLICIVGGPNS 144 (585)
Q Consensus 122 ~~~l~~A~~~~~PllvI~g~~~~ 144 (585)
+..+..|...+.++|.||+....
T Consensus 113 ~~~~~~ak~~g~~vi~IT~~~~s 135 (183)
T 2xhz_A 113 TALIPVLKRLHVPLICITGRPES 135 (183)
T ss_dssp HHHHHHHHTTTCCEEEEESCTTS
T ss_pred HHHHHHHHHCCCCEEEEECCCCC
Confidence 78888899999999999986543
No 164
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=20.18 E-value=1.3e+02 Score=27.52 Aligned_cols=75 Identities=12% Similarity=-0.003 Sum_probs=39.6
Q ss_pred cEEEEEccchhcccHHHHHHHHHhCC--ceEEEEEeCCcceeeeeecCCCcCCCCCCChHHHHHHhcCCCCCceeEEEc-
Q 044559 455 RVIACIGDGSFQVTAQDVSTMLRCGQ--KTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF- 531 (585)
Q Consensus 455 ~vv~v~GDGsf~~~~~eL~ta~~~~l--pv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~V~- 531 (585)
-+|++.|-|+++..+ ..+.+.++ .|..||-|+..+ -.+.|+.+|+ ..+.++
T Consensus 15 i~vl~SG~gsnl~al---l~~~~~~~~~eI~~Vis~~~a~------------------~~~~A~~~gI-----p~~~~~~ 68 (215)
T 3da8_A 15 LVVLASGTGSLLRSL---LDAAVGDYPARVVAVGVDRECR------------------AAEIAAEASV-----PVFTVRL 68 (215)
T ss_dssp EEEEESSCCHHHHHH---HHHSSTTCSEEEEEEEESSCCH------------------HHHHHHHTTC-----CEEECCG
T ss_pred EEEEEeCChHHHHHH---HHHHhccCCCeEEEEEeCCchH------------------HHHHHHHcCC-----CEEEeCc
Confidence 356667999876544 33332234 454444444322 2567888888 666663
Q ss_pred ----CHHHHHHHHHhhcCCCCCCeEEEEEE
Q 044559 532 ----CEEELIEAIENATGPKKDCLCFIEVL 557 (585)
Q Consensus 532 ----~~~eL~~aL~~a~~~~~~gp~vIeV~ 557 (585)
+.+++++.+.+.++ .-+|-+|-+.
T Consensus 69 ~~~~~r~~~d~~~~~~l~--~~~~Dlivla 96 (215)
T 3da8_A 69 ADHPSRDAWDVAITAATA--AHEPDLVVSA 96 (215)
T ss_dssp GGSSSHHHHHHHHHHHHH--TTCCSEEEEE
T ss_pred ccccchhhhhHHHHHHHH--hhCCCEEEEc
Confidence 23455555544443 3345444443
No 165
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=20.09 E-value=1.5e+02 Score=29.15 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=42.4
Q ss_pred CCCEEEecCCCChHHHHHhhhcCCCCeEEeCcchHHHHHHHhHHhHhcC-ccEEEEeCChhh--HHHHHHHHHhhhcCCc
Q 044559 58 GATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VGACVVTFTVGG--LSVLNAIAGAYSENLP 134 (585)
Q Consensus 58 GV~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~--~n~~~~l~~A~~~~~P 134 (585)
.|.-+..+||+....+++++.+. | +|+++.+.|.|- ..++.+|.+|...++|
T Consensus 222 ~V~il~~~pG~~~~~~l~a~~~~-------------------------g~~GiVle~~G~Gn~p~~~~~~l~~a~~~Gi~ 276 (334)
T 3nxk_A 222 KVDILYSYSNDGSGVAAKALFEH-------------------------GTKGIVVAGSGAGSIHKNQKDVLKELLKKGLK 276 (334)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHT-------------------------TCCEEEEEEBTTTBCCHHHHHHHHHHHTTTCE
T ss_pred cEEEEEEeCCCCCHHHHHHHHhC-------------------------CCCEEEEeeECCCCCcHHHHHHHHHHHHCCCE
Confidence 47777788885445566655432 3 378888888773 3577888999999999
Q ss_pred EEEEeCC
Q 044559 135 LICIVGG 141 (585)
Q Consensus 135 llvI~g~ 141 (585)
|++.|-.
T Consensus 277 VV~~Src 283 (334)
T 3nxk_A 277 VVVSSRV 283 (334)
T ss_dssp EEEEESS
T ss_pred EEEeCCC
Confidence 9998843
No 166
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=20.02 E-value=83 Score=30.79 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEcCCcccc
Q 044559 236 MGLEAAVEAAAEFLNKAVKPVLVAGPKMRV 265 (585)
Q Consensus 236 ~~~~~~v~~~~~~L~~a~rpvIi~G~g~~~ 265 (585)
......+++++++|.++++.+++.|.|...
T Consensus 28 ~~l~~~i~~l~~~i~~a~~ivvlTGAGISt 57 (318)
T 3k35_A 28 EELERKVWELARLVWQSSSVVFHTGAGIST 57 (318)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEECGGGSG
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeccccCh
Confidence 445677899999999999999999999864
No 167
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=20.01 E-value=2.3e+02 Score=21.60 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=31.9
Q ss_pred eeEEEcCHHHHHHHHHhhcCCCCCCeEEEEEEcCCCCChHHHHHHHHHh
Q 044559 526 WTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRV 574 (585)
Q Consensus 526 ~~~~V~~~~eL~~aL~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~ 574 (585)
....+.+.+++.+.++.+.. .++++||....+.-..-..+...++++
T Consensus 5 ~v~~i~~~~~~~~~~~~~~~--~~~~~vv~f~~~~C~~C~~~~~~l~~~ 51 (113)
T 1ti3_A 5 QVIACHTVDTWKEHFEKGKG--SQKLIVVDFTASWCPPCKMIAPIFAEL 51 (113)
T ss_dssp CEEEECSHHHHHHHHHHHTT--SSSEEEEEEECSSCHHHHHHHHHHHHH
T ss_pred ceeEeccHHHHHHHHHHhhh--cCCeEEEEEECCCCHHHHHHHHHHHHH
Confidence 56778899999999988764 678999888876433333344444433
No 168
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=20.00 E-value=1.1e+02 Score=25.27 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEe
Q 044559 49 HLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIG 87 (585)
Q Consensus 49 ~i~~~L~~~GV~~vFg~PG~~~~~l~~al~~~~~i~~i~ 87 (585)
.+++.+.+.|++.|.-.+|.....+.+..++ .+|+++.
T Consensus 73 ~~v~e~~~~g~k~v~~~~G~~~~e~~~~a~~-~Girvv~ 110 (122)
T 3ff4_A 73 SEYNYILSLKPKRVIFNPGTENEELEEILSE-NGIEPVI 110 (122)
T ss_dssp GGHHHHHHHCCSEEEECTTCCCHHHHHHHHH-TTCEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCChHHHHHHHHH-cCCeEEC
Confidence 4567778899999999999988888887765 4799883
Done!