RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 044559
(585 letters)
>gnl|CDD|215311 PLN02573, PLN02573, pyruvate decarboxylase.
Length = 578
Score = 1250 bits (3236), Expect = 0.0
Identities = 494/576 (85%), Positives = 523/576 (90%), Gaps = 21/576 (3%)
Query: 31 SSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCN 90
S+ V+ S++TLGRHLARRLV+IG TDVFSVPGDFNLTLLDHLIAEPGLNLIGCCN
Sbjct: 3 SAPKPATPVSSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCN 62
Query: 91 ELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTN 150
ELNAGYAADGYAR+RGVGACVVTFTVGGLSVLNAIAGAYSENLP+ICIVGGPNSNDYGTN
Sbjct: 63 ELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN 122
Query: 151 RILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACN 210
RILHHTIGLPDFSQELRCFQTVTCYQAV+NNLEDAHELIDTA+STALKESKPVYISV+CN
Sbjct: 123 RILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALKESKPVYISVSCN 182
Query: 211 LPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACN 270
L AIPHPTFSREPVPF L+P+LSN+M LEAAVEAAAEFLNKAVKPVLV GPK+RVAKAC
Sbjct: 183 LAAIPHPTFSREPVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACK 242
Query: 271 AFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFF----------------- 313
AFVELADA GY VAVMPSAKGLVPEHHPHFIGTYWGAVST F
Sbjct: 243 AFVELADASGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIF 302
Query: 314 ----SVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYH 369
SVGYSLLLKKEKA+I+QPDRV I NGPAFGCVLMKDFL+AL+KR+K NTTAYENY
Sbjct: 303 NDYSSVGYSLLLKKEKAIIVQPDRVTIGNGPAFGCVLMKDFLEALAKRVKKNTTAYENYK 362
Query: 370 RIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYE 429
RI+VPEG+P K EP EPLRVNVLF+HIQKMLS +TAVIAETGDSWFNCQKLKLP+GCGYE
Sbjct: 363 RIFVPEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVIAETGDSWFNCQKLKLPEGCGYE 422
Query: 430 FQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
FQMQYGSIGWSVGATLGYAQ+ P+KRVIACIGDGSFQVTAQDVSTM+RCGQK+IIFLINN
Sbjct: 423 FQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIFLINN 482
Query: 490 GGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKD 549
GGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWT KV EEELIEAI ATG KKD
Sbjct: 483 GGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKD 542
Query: 550 CLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 585
CLCFIEV+VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct: 543 CLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 578
>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine
pyrophosphate-requiring enzymes [Carbohydrate transport
and metabolism / Coenzyme metabolism / General function
prediction only].
Length = 557
Score = 524 bits (1352), Expect = 0.0
Identities = 208/568 (36%), Positives = 308/568 (54%), Gaps = 38/568 (6%)
Query: 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADG 100
S T+G +L RL Q+G +F VPGD+NL+LLD + + PGL +G NELNA YAADG
Sbjct: 1 SSPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADG 60
Query: 101 YARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160
YAR G+ A V TF VG LS LN IAG+Y+E++P++ IVG P ++ + +LHHT+G
Sbjct: 61 YARLNGISALVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDG 120
Query: 161 DFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPA--IPHPT 218
DF R + +TC QA++ ++ A ID + TALK+ +PVYI + ++ I P
Sbjct: 121 DFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRRPVYIGLPADVADLPIEAPL 180
Query: 219 FSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADA 278
P L K S+ L ++ AE +NKA KPV++A + +L +A
Sbjct: 181 -----TPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINA 235
Query: 279 CGYAVAVMPSAKGLVPEHHPHFIGTYWGAVS---------------------TAFFSVGY 317
G+ VA +P KG++ E HP+++G Y G +S T F + G+
Sbjct: 236 TGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGF 295
Query: 318 SLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQ 377
+ K + + PD V I + F + MKD L+ L+K++ + + P
Sbjct: 296 TYQYKPANIIEIHPDSVKIKDA-VFTNLSMKDALQELAKKIDKRNLSAPP---VAYPART 351
Query: 378 PPKCEPK--EPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYG 435
PP P EPL L+ +Q L +IAETG S+F ++LPKG + Q +G
Sbjct: 352 PPTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGALDIRLPKGATFISQPLWG 411
Query: 436 SIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIE 495
SIG+++ A LG A + P++RVI IGDGS Q+T Q++STM+R G K IIF++NN GYTIE
Sbjct: 412 SIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNNDGYTIE 471
Query: 496 VEIH--DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCF 553
IH PYN I++W+YT L +A G+ + EEL A++ A D +
Sbjct: 472 RAIHGPTAPYNDIQSWDYTALPEAFGAKNGEA-KFRATTGEELALALDVAFA-NNDRIRL 529
Query: 554 IEVLVHKDDTSKELLEWGSRVSAANSRP 581
IEV++ D + L++ +A N++
Sbjct: 530 IEVMLPVLDAPELLIDQAKATAAQNNKQ 557
>gnl|CDD|132434 TIGR03393, indolpyr_decarb, indolepyruvate decarboxylase, Erwinia
family. A family of closely related, thiamine
pyrophosphate-dependent enzymes includes indolepyruvate
decarboxylase (EC 4.1.1.74), phenylpyruvate
decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC
4.1.1.1), branched-chain alpha-ketoacid decarboxylase,
etc.. Members of this group of homologs may overlap in
specificity. Within the larger family, this model
represents a clade of bacterial indolepyruvate
decarboxylases, part of a pathway for biosynthesis of
the plant hormone indole-3-acetic acid. Typically, these
species interact with plants, as pathogens or as
beneficial, root-associated bacteria [Central
intermediary metabolism, Other].
Length = 539
Score = 304 bits (780), Expect = 2e-96
Identities = 179/545 (32%), Positives = 265/545 (48%), Gaps = 43/545 (7%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+G +L RL IG +F VPGD+NL LDH+I P + +GC NELNA YAADGYAR
Sbjct: 2 TVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARC 61
Query: 105 RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ 164
+G A + TF VG LS +N IAG+Y+E+LP+I IVG P + +LHHT+G DF
Sbjct: 62 KGAAALLTTFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRH 121
Query: 165 ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPV 224
R VT QAV+ ++A ID ++TAL+E +P Y+ + ++ A +
Sbjct: 122 FYRMAAEVTVAQAVL-TEQNATAEIDRVITTALRERRPGYLMLPVDVAAKA---VTPPVN 177
Query: 225 PFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVA 284
P + L A +AA L A + L+A +A + A
Sbjct: 178 PLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHA 237
Query: 285 VMPSAKGLVPEHHPHFIGTYWGAVST-----------AFFSV----------GYSLLLKK 323
+ KG++ E F GTY G+ ST A V G++ L
Sbjct: 238 TLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLTP 297
Query: 324 EKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEP 383
E+ + +QP + N F + M D ++ L + E+ ++ G P +P
Sbjct: 298 EQTIDVQPHAARVGN-VWFTGIPMNDAIETLVE-------LCEHAGLMWSSSGAIPFPQP 349
Query: 384 KEPLRV---NVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWS 440
E +Q +Q L ++A+ G S F L+LP + Q +GSIG++
Sbjct: 350 DESRSALSQENFWQTLQTFLRPGDIILADQGTSAFGAADLRLPADVNFIVQPLWGSIGYT 409
Query: 441 VGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD 500
+ A G + P +RVI IGDGS Q+T Q++ +MLR Q II ++NN GYT+E IH
Sbjct: 410 LPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHG 469
Query: 501 GP--YNVIKNWNYTGLVDAIH-NGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVL 557
YN I WN+T L A+ + + +CW +V E+L + +E ++ L IEV+
Sbjct: 470 AEQRYNDIALWNWTHLPQALSLDPQSECW--RVSEAEQLADVLEKVAAHER--LSLIEVV 525
Query: 558 VHKDD 562
+ K D
Sbjct: 526 LPKAD 530
>gnl|CDD|132921 cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) binding domain of
pyruvate decarboxylase (PDC), indolepyruvate
decarboxylase (IPDC) and related proteins. Thiamine
pyrophosphate (TPP family), pyrimidine (PYR) binding
domain of pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC) subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. PDC
catalyzes the conversion of pyruvate to acetaldehyde and
CO2 in alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. Also belonging to this
group is Mycobacterium tuberculosis alpha-keto acid
decarboxylase (MtKDC) which participates in amino acid
degradation via the Ehrlich pathway, and Lactococcus
lactis branched-chain keto acid decarboxylase (KdcA) an
enzyme identified as being involved in cheese ripening,
which exhibits a very broad substrate range in the
decarboxylation and carboligation reactions.
Length = 162
Score = 267 bits (685), Expect = 2e-87
Identities = 83/162 (51%), Positives = 111/162 (68%)
Query: 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGV 107
+L RL Q+G VF VPGD+NL LLD + PGL +G CNELNAGYAADGYAR +G+
Sbjct: 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKGL 60
Query: 108 GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELR 167
GA V T+ VG LS LN IAGAY+E++P++ IVG P++ + +LHHT+G DF L+
Sbjct: 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK 120
Query: 168 CFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVAC 209
F+ +TC A + + E+A E ID + TAL+ES+PVYI +
Sbjct: 121 MFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family,
PDC_IPDC subfamily, TPP-binding module; composed of
proteins similar to pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC, a key enzyme
in alcoholic fermentation, catalyzes the conversion of
pyruvate to acetaldehyde and CO2. It is able to utilize
other 2-oxo acids as substrates. In plants and various
plant-associated bacteria, IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway, a
tryptophan-dependent biosynthetic route to
indole-3-acetaldehyde (IAA). IPDC catalyzes the
decarboxylation of IPA to IAA. Both PDC and IPDC depend
on TPP and Mg2+ as cofactors.
Length = 183
Score = 263 bits (675), Expect = 2e-85
Identities = 88/185 (47%), Positives = 113/185 (61%), Gaps = 4/185 (2%)
Query: 386 PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATL 445
PL L+Q +Q L ++AETG SWF LKLPKG + Q +GSIG+SV A L
Sbjct: 1 PLTQARLWQQVQNFLKPNDILVAETGTSWFGALDLKLPKGTRFISQPLWGSIGYSVPAAL 60
Query: 446 GYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDG--PY 503
G A + P++RVI +GDGSFQ+T Q++STM+R G IIFLINN GYTIE IH Y
Sbjct: 61 GAALAAPDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASY 120
Query: 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563
N I NWNYT L + G G + +V E EL EA+++A +D L IEV++ KDD
Sbjct: 121 NDIANWNYTKLPEVF-GGGGGGLSFRVKTEGELDEALKDALF-NRDKLSLIEVILPKDDA 178
Query: 564 SKELL 568
+ L
Sbjct: 179 PEALK 183
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 200 bits (511), Expect = 4e-57
Identities = 146/563 (25%), Positives = 227/563 (40%), Gaps = 78/563 (13%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYAR- 103
T L L G VF +PG L L D L G+ I +E A +AADGYAR
Sbjct: 3 TGAEALVEALEANGVDTVFGIPGGSILPLYDALYDS-GIRHILVRHEQGAAFAADGYARA 61
Query: 104 SRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFS 163
+ G C+VT G ++L +A AY +++PL+ I G ++ GT D
Sbjct: 62 TGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGT-----------DAF 110
Query: 164 QEL---RCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-SKPVYISVACNLPAIPHPTF 219
QE+ F+ +T Y V + ED E++ A AL PV + + ++ A
Sbjct: 111 QEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEP 170
Query: 220 SREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
EP P A+ AAE L +A +PV++AG +R A A ELA+
Sbjct: 171 GPEPAI---LPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKL 227
Query: 280 GYAVAVMPSAKGLVPEHHPHFIG------TYWG-----------AVSTAF--FSVGYSLL 320
G V KG VPE HP +G T AV F GYS
Sbjct: 228 GAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTGYSGF 287
Query: 321 LKKEKAVILQPDRVVIANGPAFGCVL---------MKDFLKALSKRLKSNTTAY-----E 366
I+ D + G K L+AL + LK A+ E
Sbjct: 288 APPAA--IIHIDI----DPAEIGKNYPVDVPIVGDAKATLEALLEELKPERAAWLEELLE 341
Query: 367 NYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDS--WFNCQKLKLPK 424
+ + +P V + ++++L + V+ + G W + +
Sbjct: 342 ARAAYRDLALEELADDGIKPQYV---IKVLRELLPDDAIVVTDVGQHQMWAA-RYFDFYR 397
Query: 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTII 484
+ G++G+ + A +G + P+++V+A GDG F + Q++ T +R G I
Sbjct: 398 PRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKI 457
Query: 485 FLINNGGYTI----EVEIHDGPYNVIK--NWNYTGLVDAIHNGEGKCWTTKVFCEEELIE 538
++NNGGY + + + G Y+ N ++ L +A +G +V EEL E
Sbjct: 458 VVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYG-AKG----IRVETPEELEE 512
Query: 539 AIENATGPKKDCLCFIEVLVHKD 561
A+E A D I+V+V +
Sbjct: 513 ALEEAL--ASDGPVLIDVVVDPE 533
>gnl|CDD|217224 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal
TPP binding domain.
Length = 172
Score = 139 bits (353), Expect = 9e-39
Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 9/165 (5%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYAR- 103
T LA L +G VF VPG L LLD L PG+ + +E AG+AADGYAR
Sbjct: 2 TGADALAEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYARA 61
Query: 104 SRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFS 163
+ G +VT G + L +A AY + +P++ I G ++D G GL +
Sbjct: 62 TGKPGVVLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRG-------GLQEEL 114
Query: 164 QELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISV 207
+L F+ VT + V + ++ E +D A AL PVY+ +
Sbjct: 115 DQLALFRPVTKWAERVTSPDEIPEALDRAFRAALSGRPGPVYLEL 159
>gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate
decarboxylase, Azospirillum family. A family of closely
related, thiamine pyrophosphate-dependent enzymes
includes indolepyruvate decarboxylase (EC 4.1.1.74),
phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate
decarboxylase (EC 4.1.1.1), branched-chain
alpha-ketoacid decarboxylase, etc.. Members of this
group of homologs may overlap in specificity. This model
represents a clade that includes a Azospirillum
brasilense member active as both phenylpyruvate
decarboxylase and indolepyruvate decarboxylase.
Length = 535
Score = 145 bits (368), Expect = 2e-37
Identities = 149/563 (26%), Positives = 230/563 (40%), Gaps = 74/563 (13%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPG-LNLIGCCNELNAGYAADGYAR 103
L L R L GA ++F +PGDF L +I E G L L +E G+AAD AR
Sbjct: 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFK-VIEETGILPLHTLSHEPAVGFAADAAAR 59
Query: 104 SRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162
RG +G VT+ G +++NAIAGAY+E P++ I G P + + +LHH D
Sbjct: 60 YRGTLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLD- 118
Query: 163 SQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSRE 222
+ + F+ VTC QAV+++ A I + +A + S+PVY+ + ++ E
Sbjct: 119 -SQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARELSRPVYLEIPRDMVNAE-----VE 172
Query: 223 PVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYA 282
PVP + L+A + + A PV++ ++R ELA G
Sbjct: 173 PVP-DDPAWPVDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVP 231
Query: 283 VAVMPSAKGLVPEHHPHFIGTYWGA----------------------VSTAFFSVGYSLL 320
V +GL+ + +GTY G +S F+V +
Sbjct: 232 VVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVSQRKI 291
Query: 321 LKKEKAVILQPDRVV------IANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVP 374
+ I DR V A+ P G V D L AL L + P
Sbjct: 292 --DLRRTIHAFDRAVTLGYHVYADIPLAGLV---DALLALLCGLPPSDRTTRGKGPHAYP 346
Query: 375 EGQPPKCEPKEPLR----VNVLFQHIQKMLSSETAVIAETGDSWFNCQK-----LKLPKG 425
G EP P+ VN F +M + A+ GD F L P
Sbjct: 347 RGLQADAEPIAPMDIARAVNDRFARHGQM-----PLAADIGDCLFTAMDMDDAGLMAP-- 399
Query: 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIF 485
GY Y +G+ V A +G AQ KR++ +GDG+FQ+T ++ R G I+
Sbjct: 400 -GY-----YAGMGFGVPAGIG-AQCTSGKRILTLVGDGAFQMTGWELGNCRRLGIDPIVI 452
Query: 486 LINNGGY-TIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENAT 544
L NN + + V + +N + +W + + + G+G T+ EL A++ A
Sbjct: 453 LFNNASWEMLRVFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRA----ELAAALDKAF 507
Query: 545 GPKKDCLCFIEVLVHKDDTSKEL 567
+ IE ++ + S L
Sbjct: 508 A-TRGRFQLIEAMLPRGVLSDTL 529
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of
thiamine pyrophosphate (TPP)-dependent enzymes.
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR)
binding domain; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. A polar interaction between the
conserved glutamate of the PYR domain and the N1' of the
TPP aminopyrimidine ring is shared by most TPP-dependent
enzymes, and participates in the activation of TPP. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this group. Most TPP-dependent enzymes have
the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. In the case of 2-oxoisovalerate
dehydrogenase (2OXO), sulfopyruvate decarboxylase
(ComDE), and the E1 component of human pyruvate
dehydrogenase complex (E1- PDHc) the PYR and PP domains
appear on different subunits. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. For many of these enzymes the
active sites lie between PP and PYR domains on different
subunits. However, for the homodimeric enzymes
1-deoxy-D-xylulose 5-phosphate synthase (DXS) and
Desulfovibrio africanus pyruvate:ferredoxin
oxidoreductase (PFOR), each active site lies at the
interface of the PYR and PP domains from the same
subunit.
Length = 154
Score = 116 bits (292), Expect = 2e-30
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 8/160 (5%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGA 109
A L G VF PGD +LLD L + +EL A AA GYAR+ G
Sbjct: 3 FAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPV 62
Query: 110 CVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 169
+VT G L+ +N +A A +E+LP++ ++G + +L +
Sbjct: 63 VIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGISAQAK--------QTFQSMFDLGMY 114
Query: 170 QTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVAC 209
+++ + + ID A+ TA PV + +
Sbjct: 115 RSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLPR 154
>gnl|CDD|132918 cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) binding domain of POX
and related proteins. Thiamine pyrophosphate (TPP
family), pyrimidine (PYR) binding domain of pyruvate
oxidase (POX) and related protiens subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. A
polar interaction between the conserved glutamate of the
PYR domain and the N1' of the TPP aminopyrimidine ring
is shared by most TPP-dependent enzymes, and
participates in the activation of TPP. For glyoxylate
carboligase, which belongs to this subfamily, but lacks
this conserved glutamate, the rate of the initial TPP
activation step is reduced but the ensuing steps of the
enzymic reaction proceed efficiently. The PYR and PP
domains have a common fold, but do not share strong
sequence conservation. The PP domain is not included in
this sub-family. Most TPP-dependent enzymes have the PYR
and PP domains on the same subunit although these
domains can be alternatively arranged in the primary
structure. TPP-dependent enzymes are multisubunit
proteins, the smallest catalytic unit being a
dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. POX
decarboxylates pyruvate, producing hydrogen peroxide and
the energy-storage metabolite acetylphosphate. This
subfamily includes pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC catalyzes the
conversion of pyruvate to acetaldehyde and CO2 in
alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. This subfamily also
includes the large catalytic subunit of acetohydroxyacid
synthase (AHAS). AHAS catalyzes the condensation of two
molecules of pyruvate to give the acetohydroxyacid,
2-acetolactate, a precursor of the branched chain amino
acids, valine and leucine. AHAS also catalyzes the
condensation of pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis.
Methanococcus jannaschii sulfopyruvate decarboxylase
(MjComDE) and phosphonopyruvate decarboxylase (PpyrDc)
also belong to this subfamily. PpyrDc is a homotrimeric
enzyme having the PP and PYR domains tandemly arranged
on the same subunit. It functions in the biosynthesis of
C-P compounds such as bialaphos tripeptide in
Streptomyces hygroscopicus. MjComDE is a dodecamer
having the PYR and PP domains on different subunits, it
has six alpha (PYR/ComD) subunits and six beta (PP/ComE)
subunits. MjComDE catalyzes the decarboxylation of
sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M
pathway.
Length = 155
Score = 114 bits (287), Expect = 1e-29
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 11/160 (6%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYAR-SRGVG 108
L L G VF VPG L LLD L A G+ I +E A ADGYAR + G
Sbjct: 3 LVEALKAEGVDHVFGVPGGAILPLLDAL-ARSGIRYILVRHEQGAVGMADGYARATGKPG 61
Query: 109 ACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 168
+VT G + + +A AY +++PL+ I G + G + Q +
Sbjct: 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGA-------FQEIDQ-VAL 113
Query: 169 FQTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISV 207
F+ +T + V + E+ E + A AL PV + +
Sbjct: 114 FRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDL 153
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 95.2 bits (237), Expect = 1e-20
Identities = 119/496 (23%), Positives = 194/496 (39%), Gaps = 90/496 (18%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VG 108
+ L G VF PG L + D L + G+ I +E A +AADGYAR+ G VG
Sbjct: 7 IIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVG 66
Query: 109 ACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE--- 165
+VT G +++ IA AY +++P++ G ++ IG F QE
Sbjct: 67 VVLVTSGPGATNLVTGIATAYMDSIPMVVFTG----------QVPTSLIGSDAF-QEADI 115
Query: 166 LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNLPA-IPHPTFSREP 223
L +T + V + ED +I A A PV + +LP + P
Sbjct: 116 LGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLV----DLPKDVTTAEI-EYP 170
Query: 224 VPFSLS-----PKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADA 278
P ++ P + G ++ AAE +N A KPV++ G + +A A ELA+
Sbjct: 171 YPEKVNLPGYRPTVK---GHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAER 227
Query: 279 CGYAVAVMPSAKGLVPEHHPHFI------GTYWG--AVSTA--FFSVGYSLL------LK 322
V G PE HP + GT AV +VG L
Sbjct: 228 IQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVTGNLA 287
Query: 323 K--EKAVILQPD-------RVVIANGPAFGCV--LMKDFLKALSKRLKSNTTAYENYHRI 371
K A I+ D + V + P G ++++ LK L + + +A+ +I
Sbjct: 288 KFAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLFELKERKESAWLE--QI 345
Query: 372 Y-VPEGQPPKCE-PKEPLRVNVLFQHIQKMLSSETAVIAETG---------------DSW 414
+ P K + +E ++ + + + ++ E V + G +
Sbjct: 346 NKWKKEYPLKMDYTEEGIKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRF 405
Query: 415 FNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVST 474
L G++G+ + A +G + PE VI GDGSFQ+ Q++ST
Sbjct: 406 ITSGGL--------------GTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELST 451
Query: 475 MLRCGQKTIIFLINNG 490
++ I ++NN
Sbjct: 452 AVQYDIPVKILILNNR 467
>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase.
Members of this protein family are sulfoacetaldehyde
acetyltransferase, an enzyme of taurine utilization.
Taurine, or 2-aminoethanesulfonate, can be used by
bacteria as a source of carbon, nitrogen, and sulfur
[Central intermediary metabolism, Other].
Length = 579
Score = 94.9 bits (236), Expect = 2e-20
Identities = 104/502 (20%), Positives = 179/502 (35%), Gaps = 95/502 (18%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVT 113
LV G T F + G + +D L G+ I +E AG+ ADG+AR G + V+
Sbjct: 12 LVANGVTHAFGIMGSAFMDAMD-LFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIG 70
Query: 114 FTVGGLS-VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ--ELRCFQ 170
G++ + AIA AY + P++ + P + GT TIGL F + +L FQ
Sbjct: 71 QNGPGVTNCVTAIAAAYWAHTPVVIV--TPEA---GTK-----TIGLGGFQEADQLPMFQ 120
Query: 171 TVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSRE-------P 223
T YQ V + E+++ A +E P ++ IP F E P
Sbjct: 121 EFTKYQGHVRHPSRMAEVLNRCFERAWREMGPAQLN-------IPRDYFYGEIDVEIPRP 173
Query: 224 VPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAV 283
V G ++ AA L +A PV+++G + + A LA+ G V
Sbjct: 174 VRLDRGA------GGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPV 227
Query: 284 AVMPSAKGLVPEHHPHFIGT--YWGAVSTAF-----------------FSV--GYSLLLK 322
P HP ++G Y G+ + F Y +
Sbjct: 228 VNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYW 287
Query: 323 KEKAVILQ----PDRVVIANGPAFG-CVLMKDFLKALSKRLKSNTTAYENYHRI------ 371
+ A I+Q + + G C K + +RL R
Sbjct: 288 PKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAE 347
Query: 372 ----------YVPEGQPPKC--------EPKEPLRVNVLFQHIQK------MLSSETAVI 407
E P E L + + ++K ++S++ I
Sbjct: 348 RSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLRELEKAMPEDAIVSTDIGNI 407
Query: 408 AETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQV 467
+S+ + K + M +G+ G++ +G + P++ V+A GDG++ +
Sbjct: 408 NSVANSYL-----RFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGM 462
Query: 468 TAQDVSTMLRCGQKTIIFLINN 489
+ ++ T +R + N
Sbjct: 463 SMNEIMTAVRHDIPVTAVVFRN 484
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 91.2 bits (227), Expect = 2e-19
Identities = 81/276 (29%), Positives = 108/276 (39%), Gaps = 30/276 (10%)
Query: 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPG-LNLIGCCNELNAGYAAD 99
+ T G + LV G VF +PG L D L + +I +E AGY A
Sbjct: 1 MTTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAF 60
Query: 100 GYARSRG-VGACVVTFTVGGLSVLNAIAG---AYSENLPLICIVGGPNSNDYGTNR-ILH 154
GYARS G G C V V G VLNA A AY N P++C+ G S G R LH
Sbjct: 61 GYARSTGRPGVCSV---VPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLH 117
Query: 155 HTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNLPA 213
+PD LR F T + + + +A L+ A L +PV +
Sbjct: 118 E---MPDQLATLRSF---TKWAERIEHPSEAPALVAEAFQQMLSGRPRPVAL-------E 164
Query: 214 IPHPTF-SREPV-PFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNA 271
+P F R PV A+ AAA + A P++ G A
Sbjct: 165 MPWDVFGQRAPVAAAPPLRPAPPPAPDPDAIAAAAALIAAAKNPMIFVGGGAAGAGE--E 222
Query: 272 FVELADACGYAVAVMPSAKGLVPEHHP---HFIGTY 304
ELA+ V S +G+V + HP +F Y
Sbjct: 223 IRELAEMLQAPVVAFRSGRGIVSDRHPLGLNFAAAY 258
Score = 42.7 bits (101), Expect = 5e-04
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTII 484
CGY+ G++G+ LG + P++ V++ GDG F Q+++T ++ +
Sbjct: 397 TCGYQ-----GTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVT 451
Query: 485 FLINNGGY----TIEVEIHDGPY 503
+ NN Y + G
Sbjct: 452 VVFNNNAYGNVRRDQKRRFGGRV 474
>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 84.1 bits (208), Expect = 5e-17
Identities = 112/513 (21%), Positives = 195/513 (38%), Gaps = 74/513 (14%)
Query: 98 ADGYARS---RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILH 154
ADGYAR+ VG V + G + +A AY +++P++ + G R
Sbjct: 70 ADGYARATSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTG-------YPRGST 122
Query: 155 HTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKES-KPVYISVACNLPA 213
P+F LR ++ +T + V ++ EL+ A + PV + + ++ A
Sbjct: 123 DV--APNFES-LRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVDVLA 179
Query: 214 IPHPTFSREPVPFSLSPKLSNEMGLE-AAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAF 272
+P P + G + V AA L A +PV+ AG + A+A
Sbjct: 180 EELDE-----LPLDHRPSRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPEL 234
Query: 273 VELADACGYAVAVMPSAKGLVPEHHPHFIGT---YWGAVSTAF-------FSVG------ 316
ELA+ V + K PE HP +G+ A F F +G
Sbjct: 235 KELAELLEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRS 294
Query: 317 -YSLLLKKEKAVI--------LQPDRVVIANG-PAFGCVLMKDFLKALSKRL-----KSN 361
Y L + + K +I L D I +G +++K ++ L +R+ ++
Sbjct: 295 YYGLPMPEGKTIIHSTLDDADLNKD-YPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQ 353
Query: 362 TTAYE--NYHRIYVPEGQP---PKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDS--- 413
A E ++ + P P P RV +Q + +T +I S
Sbjct: 354 QVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRV---VWELQHAVDIKTVIITHDAGSPRD 410
Query: 414 ----WFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTA 469
++ + G G Q+ YG +G ++GA L + P+ VI GD +F +T
Sbjct: 411 QLSPFYVASRPGSYLGWGKTTQLGYG-LGLAMGAKL----ARPDALVINLWGDAAFGMTG 465
Query: 470 QDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTK 529
D T +R + L+NN ++ + + +G AI G + +
Sbjct: 466 MDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARALG-GYGER 524
Query: 530 VFCEEELIEAIENATGPKKDCL-CFIEVLVHKD 561
V E L+ A+ A K+ +EV+ ++
Sbjct: 525 VEDPEMLVPALLRALRKVKEGTPALLEVITSEE 557
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 83.1 bits (206), Expect = 1e-16
Identities = 70/262 (26%), Positives = 106/262 (40%), Gaps = 55/262 (20%)
Query: 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADG 100
PSE+ L G T F + G + D L G+ I +E NAG+ ADG
Sbjct: 8 PSEA-----FVETLQAHGITHAFGIIGSAFMDASD-LFPPAGIRFIDVAHEQNAGHMADG 61
Query: 101 YARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGL 159
Y R G +G + G + + A+A AY + P++ + T + TIG
Sbjct: 62 YTRVTGRMGMVIGQNGPGITNFVTAVATAYWAHTPVVLV----------TPQAGTKTIGQ 111
Query: 160 PDFSQE---LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLP---- 212
F QE + F+ +T YQ V + E+++ A +ES P I N+P
Sbjct: 112 GGF-QEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRESGPAQI----NIPRDYF 166
Query: 213 ------AIPHPT-FSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRV 265
IP P R G E ++ AAE L++A PV+++G + +
Sbjct: 167 YGVIDVEIPQPVRLERGA-------------GGEQSLAEAAELLSEAKFPVILSGAGVVL 213
Query: 266 AKACNAFVELAD------ACGY 281
+ A LA+ ACGY
Sbjct: 214 SDAIEECKALAERLDAPVACGY 235
Score = 33.4 bits (77), Expect = 0.38
Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 399 MLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIA 458
++S++ +S+ L+ KG Y +G+ G++ A +G + P++ V+
Sbjct: 404 IVSTDIGNNCSIANSY-----LRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVG 458
Query: 459 CIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIE----VEIHDGPY---NVIKNWNY 511
GDG++ ++ +V T +R + N + E V+ ++ + + N +Y
Sbjct: 459 FAGDGAWGISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSY 518
Query: 512 TGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCL-CFIEVLV 558
G+ +A+ EG V +EEL A++ A + + IE++
Sbjct: 519 AGIAEAM-GAEG----VVVDTQEELGPALKRAIDAQNEGKTTVIEIMC 561
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 76.5 bits (189), Expect = 2e-16
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 392 LFQHIQKMLSSETAVIAETGDS--WFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQ 449
+ ++ L + V+ + G+S W + L L +G + +G++G+ + A +G A
Sbjct: 2 VLAALRAALPEDAIVVNDAGNSAYWAY-RYLPLRRGRRFLTSTGFGAMGYGLPAAIGAAL 60
Query: 450 SVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNV---- 505
+ P++ V+ GDG F +T Q+++T +R G I+ + NNGGY + Y
Sbjct: 61 AAPDRPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSG 120
Query: 506 --IKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLV 558
+ N ++ L +A +V E+L A+ A L IEV
Sbjct: 121 TDLSNPDFAALAEAYG-----AKGVRVEDPEDLEAALAEALAAGGPAL--IEVKT 168
>gnl|CDD|132922 cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding domain of POX.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of pyruvate oxidase (POX) subfamily. The
PYR domain is found in many key metabolic enzymes which
use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Most TPP-dependent enzymes have the PYR and
PP domains on the same subunit although these domains
can be alternatively arranged in the primary structure.
TPP-dependent enzymes are multisubunit proteins, the
smallest catalytic unit being a dimer-of-active sites.
Lactobacillus plantarum POX is a homotetramer
(dimer-of-homodimers), having two active sites per
homodimer lying between PYR and PP domains of different
subunits. POX decarboxylates pyruvate, producing
hydrogen peroxide and the energy-storage metabolite
acetylphosphate.
Length = 164
Score = 75.3 bits (186), Expect = 6e-16
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+ + L G V+ +PGD L+D L E + I +E A +AA A+
Sbjct: 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKL 60
Query: 105 RG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFS 163
G +G C+ + G + +LN + A + P++ I G +++ GT D+
Sbjct: 61 TGKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGT-----------DYF 109
Query: 164 QE---LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISV 207
QE L F+ V Y V + E EL+D A+ TA+ + + +
Sbjct: 110 QEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVAVLIL 156
>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central
domain. The central domain of TPP enzymes contains a
2-fold Rossman fold.
Length = 136
Score = 71.4 bits (176), Expect = 6e-15
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFI 301
++ AAE L A +PV++AG +R + A LA+ G V KG PE HP ++
Sbjct: 1 IDKAAELLASAKRPVILAGGGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYL 60
Query: 302 GTYWGAVSTA 311
G G T
Sbjct: 61 G-MLGMHGTP 69
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 77.0 bits (190), Expect = 8e-15
Identities = 76/272 (27%), Positives = 126/272 (46%), Gaps = 39/272 (14%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEP-GLNLIGCCNELNAGYAADGYAR 103
G L + L G V+ +PGD ++D L E + I +E A AA YA+
Sbjct: 5 KAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAK 64
Query: 104 SRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162
G +G C+ G + +LN + A +++P++ + G S+ GT DF
Sbjct: 65 LTGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGT-----------DF 113
Query: 163 SQEL---RCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPA------ 213
QE+ + F+ V Y + + E+ E+++ A+ TA ++ +++ +LPA
Sbjct: 114 FQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDLPAQKIKDT 173
Query: 214 --IPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAK-ACN 270
TF R VP PK ++ AA+ +NKA KPV++AG + AK
Sbjct: 174 TNKTVDTF-RPTVPS---PK-------PKDIKKAAKLINKAKKPVILAGLGAKHAKEELL 222
Query: 271 AFVELADACGYAVAVMPSAKGLVPEHHPHFIG 302
AF E A + +P AKG++P+ HP+ +G
Sbjct: 223 AFAEKAKIP--IIHTLP-AKGIIPDDHPYSLG 251
Score = 38.4 bits (90), Expect = 0.009
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 452 PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
P+++ IA GDG F + QD T ++ ++ ++NN
Sbjct: 425 PDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNN 462
Score = 29.6 bits (67), Expect = 6.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 186 HELIDTAVSTALKESKPVYISVACNLPAIPHP 217
E +D A AL + KPV I V + A P P
Sbjct: 506 AEELDPAFEEALAQDKPVIIDVYVDPNAAPLP 537
>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 74.6 bits (184), Expect = 5e-14
Identities = 88/306 (28%), Positives = 132/306 (43%), Gaps = 40/306 (13%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T G L R L G VF +PG + L L A G+ + +E AG+ ADGYAR
Sbjct: 3 TCGEALVRLLEAYGVETVFGIPGVHTVELYRGL-AGSGIRHVTPRHEQGAGFMADGYARV 61
Query: 105 RG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNR-ILHHTIGLPDF 162
G G C + G ++ A+ AY++++P++ I G R LH LPD
Sbjct: 62 SGKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHE---LPD- 117
Query: 163 SQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKES---KPVYISVACNLPA--IPHP 217
+ V + + + ED E++ A A+ +S +PV+I + ++ A H
Sbjct: 118 --QRAMVAGVAAFSHTLMSAEDLPEVLARAF--AVFDSARPRPVHIEIPLDVLAAPADHL 173
Query: 218 TFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELAD 277
+ P P AA+ AAE L A +P+++AG A A A LA+
Sbjct: 174 LPAPPTRPARPGPAP-------AALAQAAERLAAARRPLILAGGGALAAAA--ALRALAE 224
Query: 278 ACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFFSVGYSLLLKKEKAVILQPDRVVIA 337
VA+ +AKGL+P HP +G S L +A+I + D VV+A
Sbjct: 225 RLDAPVALTINAKGLLPAGHP--------------LLLGASQSLPAVRALIAEAD-VVLA 269
Query: 338 NGPAFG 343
G G
Sbjct: 270 VGTELG 275
Score = 45.4 bits (108), Expect = 7e-05
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 413 SWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDV 472
WFN G YG++G+ + A +G A PE+ V+ +GDG Q T ++
Sbjct: 398 RWFNA-----STG--------YGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPEL 444
Query: 473 STMLRCGQKTIIFLINNGGY 492
++ + I+ L NN GY
Sbjct: 445 ASAVEADLPLIVLLWNNDGY 464
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 72.9 bits (179), Expect = 2e-13
Identities = 112/487 (22%), Positives = 200/487 (41%), Gaps = 85/487 (17%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VGACVV 112
L +G +F PG L L D + G+ I +E A + A+GYA+S G +G VV
Sbjct: 20 LRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVV 79
Query: 113 TFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE---LRCF 169
T G + + IA A S+++PL+ G ++ IG F QE +
Sbjct: 80 TSGPGATNAITGIADAMSDSVPLLVFTG----------QVARAGIGKDAF-QEADIVGIT 128
Query: 170 QTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNLPAIPHPTFSREP---VP 225
+T Y + D +I AV A PV I + ++ A+ F +P +P
Sbjct: 129 MPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVSAL-ETDFIYDPEVNLP 187
Query: 226 FSLSPKL-SNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVA 284
S P L N+M ++ ++ L+KA KPV++AG + A+A A+ Y +
Sbjct: 188 -SYQPTLEPNDMQIKKILKQ----LSKAKKPVILAGGGINYAEAATELNAFAER--YQIP 240
Query: 285 VMPSAKGL--VPEHHPHFI------GTYWGAVSTAFFSVGYSLLLK-------------- 322
V+ + G + HP F+ G+Y A + A + + +
Sbjct: 241 VVTTLLGQGTIATSHPLFLGMGGMHGSY--AANIAMTEADFMINIGSRFDDRLTGNPKTF 298
Query: 323 KEKAVILQPD-------RVVIANGPAFGCVLMKDFLKALSKRLKSNT--TAYENY-HRIY 372
+ A + D +++ + P G D KAL L T E + ++
Sbjct: 299 AKNAKVAHIDIDPAEIGKIIKTDIPVVG-----DAKKALQMLLAEPTVHNNTEKWIEKVT 353
Query: 373 VPEGQPPKCEPKEP-LRVNVLFQHIQKMLSSETAVIAETGDS--WF-------NCQKLKL 422
+ + + KE ++ + + I ++ + + V+ + G W N ++L
Sbjct: 354 KDKNRVRSYDKKERVVQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVT 413
Query: 423 PKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKT 482
G G++G+ + A +G + P+K VI +GDG FQ+T Q+++ +
Sbjct: 414 SGG--------LGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPI 465
Query: 483 IIFLINN 489
+ ++NN
Sbjct: 466 KVVMLNN 472
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 70.0 bits (172), Expect = 1e-12
Identities = 83/352 (23%), Positives = 134/352 (38%), Gaps = 72/352 (20%)
Query: 183 EDAHELIDTAVSTALKESK-PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLE-A 240
ED I A A++ + PV++S IP+ + + P + +S+ + + A
Sbjct: 143 EDVPAAIARAYHIAMQPPRGPVFVS-------IPYDDWDQ-PAEPLPARTVSSAVRPDPA 194
Query: 241 AVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP-SAKGLVPEHHPH 299
A+ + L+ A +P LV GP + A A + V LA+ V V P S + PE HP
Sbjct: 195 ALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPEDHPL 254
Query: 300 FIGTYWGAVSTAFFSVGYSLLLKKEKAVILQPDRVVIANGPAF-------------GCVL 346
F G + S LL D V++ P F G L
Sbjct: 255 FAGFLPASRE------KISALLDGH-------DLVLVIGAPVFTYHVEGPGPHLPEGAEL 301
Query: 347 ----------------------MKDFLKALSKRLKSNTTAYENYHRIYVPEGQP---PKC 381
++ L+ L L + P +P P
Sbjct: 302 VQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLPPSARP--------APPARPMPPPAP 353
Query: 382 EPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLP-KGCGYEFQMQYGSIGWS 440
P EPL V + Q + + ++ V+ E + Q+ LP + G + M G +G+
Sbjct: 354 APGEPLSVAFVLQTLAALRPADAIVVEEAPSTRPAMQE-HLPMRRQGSFYTMASGGLGYG 412
Query: 441 VGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
+ A +G A + P +RVI IGDGS + Q + + + ++NNG Y
Sbjct: 413 LPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNNGRY 464
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 69.6 bits (171), Expect = 1e-12
Identities = 75/268 (27%), Positives = 104/268 (38%), Gaps = 27/268 (10%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+G +A L Q G F V N+ +LD + + + E A AD +AR
Sbjct: 4 TVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARV 63
Query: 105 RGVGACVVTFTVGGLSVLNAIAGAYSENL----PLICIVGGPNSNDYGTNR-ILHHTIGL 159
G +T T G NA AGA E L PL+ I G + + +H
Sbjct: 64 SGGLGVALTST--GTGAGNA-AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEA--- 117
Query: 160 PDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKE-SKPVYISVACNLPA--IPH 216
PD +L + V+ V + E A I AV AL + PV + + ++ A I
Sbjct: 118 PD---QLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDIQAAEIEL 174
Query: 217 PTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELA 276
P P AAV AE L A +P+L G R A A L
Sbjct: 175 PDDLAPVHVAVPEPD-------AAAVAELAERLAAARRPLLWLGGGARHAGA--EVKRLV 225
Query: 277 DACGYAVAVMPSAKGLVPEHHPHFIGTY 304
D G+ V +G+VPE HP +G +
Sbjct: 226 DL-GFGVVTSTQGRGVVPEDHPASLGAF 252
Score = 34.6 bits (80), Expect = 0.14
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI 494
G IG + +G A + P ++ + +GDG + +++T ++ +I L+N+GGY +
Sbjct: 405 GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLMNDGGYGV 464
Query: 495 EVEIHDGPYN 504
I D Y
Sbjct: 465 IRNIQDAQYG 474
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 69.5 bits (171), Expect = 2e-12
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 25/248 (10%)
Query: 62 VFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 120
+F +PG+ NL LL+ L + + LI +E A + A Y R G G C+ T G +
Sbjct: 19 IFGIPGEENLDLLEAL-RDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATN 77
Query: 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRI---LHHTIGLPDFSQELRCFQTVTCYQA 177
++ +A A +P++ I G R + + + +T +
Sbjct: 78 LVTGVAYAQLGGMPMVAITG-----QKPIKRSKQGSFQIVDV------VAMMAPLTKWTR 126
Query: 178 VVNNLEDAHELIDTAVSTALKESKP--VYISVACNLPAIPHPTFSREPVPFSLSPKLSNE 235
+ + ++ E++ A A +E +P V++ + ++ A +P+P S S +
Sbjct: 127 QIVSPDNIPEVVREAFRLA-EEERPGAVHLELPEDIAAEETDG---KPLPRSYSRRPYAS 182
Query: 236 MGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPE 295
A+E AAE + A P+++ G A A E D G KG++PE
Sbjct: 183 ---PKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPE 239
Query: 296 HHPHFIGT 303
HP +GT
Sbjct: 240 THPLSLGT 247
Score = 39.4 bits (93), Expect = 0.005
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 452 PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
P+++V+A GDG F + +Q++ T +R G ++ ++N+ Y
Sbjct: 423 PDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDNAY 463
>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit;
Reviewed.
Length = 572
Score = 68.7 bits (168), Expect = 3e-12
Identities = 106/494 (21%), Positives = 186/494 (37%), Gaps = 106/494 (21%)
Query: 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLI---AEPGLNLIGCCNELNAGYAADGYARS 104
R L L + G +F +PG N+ + D + A L + +E A +AADGYAR+
Sbjct: 6 RILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARA 65
Query: 105 RGV-GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILH-HTIGLPDF 162
GV G C T G +++ + AY ++ P+I I G + G +G+
Sbjct: 66 SGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGV--- 122
Query: 163 SQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNL---------- 211
F+ VT Y + +++ + I A A PV I + ++
Sbjct: 123 ------FENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEEIKW 176
Query: 212 PAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNA 271
P P R P + A++ AAE L A +P+++ G + + A
Sbjct: 177 PEKPLVKGYR-DFPTRIDRL---------ALKKAAEILINAERPIILVGTGVVWSNATPE 226
Query: 272 FVELADACGYAVAVMPSAKGLVPEHHPHFIGT--YWGAV--------STAFFSVG----- 316
+ELA+ + K +P HP + G Y+G S A VG
Sbjct: 227 VLELAELLHIPIVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSD 286
Query: 317 -----YSLLLKKEKAVI------------LQPDRVVIANGPAFGCVLMKDFLKAL----- 354
Y +++ K I ++ D + N +++++ +KA+
Sbjct: 287 RTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAK----IILRELIKAITELGQ 342
Query: 355 -------SKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVI 407
KR+K Y ++ Y E K +P + ++ I++ L + V
Sbjct: 343 KRDRSAWLKRVKEYKEYYSQFY--YTEE--NGKLKPWKIMKT------IRQALPRDAIVT 392
Query: 408 AETGDS-------WFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACI 460
G W + G G++G+ + A +G + P+K V+
Sbjct: 393 TGVGQHQMWAEVFWEVLEPRTFLTSSG------MGTMGFGLPAAMGAKLARPDKVVVDLD 446
Query: 461 GDGSFQVTAQDVST 474
GDGSF +T +++T
Sbjct: 447 GDGSFLMTGTNLAT 460
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 68.8 bits (169), Expect = 4e-12
Identities = 73/271 (26%), Positives = 111/271 (40%), Gaps = 45/271 (16%)
Query: 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG- 106
+ + L G VF PG + + D L + G+ + C +E A AA GYAR+ G
Sbjct: 5 QWVVHALRAQGVDTVFGYPGGAIMPVYDALY-DGGVEHLLCRHEQGAAMAAIGYARATGK 63
Query: 107 VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQEL 166
VG C+ T G +++ +A A +++P++ I G +S GT D QE+
Sbjct: 64 VGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGT-----------DAFQEI 112
Query: 167 RCFQ---TVTCYQAVVNNLEDAHELIDTAVSTALKESK--PVYISVA-----CNLPAIPH 216
T + +V +LE+ E++ A A + PV + + PH
Sbjct: 113 DVLGLSLACTKHSFLVQSLEELPEIMAEAFEIA-SSGRPGPVLVDIPKDIQLAEGELEPH 171
Query: 217 PTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELA 276
T F A +E A L +A KPVL G + +A A A E
Sbjct: 172 LTTVENEPAFP-----------AAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFL 220
Query: 277 DACGYAVAVMPSA---KGL--VPEHHPHFIG 302
A G MP+ KGL V HP+++G
Sbjct: 221 AATG-----MPAVATLKGLGAVEADHPYYLG 246
Score = 37.2 bits (87), Expect = 0.027
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
G++G+ + A +G + P+ VI GDGSF + Q++ T+ R I L++N
Sbjct: 401 GTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDN 455
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 66.3 bits (162), Expect = 2e-11
Identities = 72/266 (27%), Positives = 113/266 (42%), Gaps = 26/266 (9%)
Query: 47 GRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG 106
+ + L G +F PG L D L L I +E A +AADGYAR+ G
Sbjct: 4 AEAIIKALEAEGVKIIFGYPGGALLPFYDALYDS-DLIHILTRHEQAAAHAADGYARASG 62
Query: 107 -VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE 165
VG CV T G +++ IA AY+++ P+I + G ++ IG F QE
Sbjct: 63 KVGVCVATSGPGATNLVTGIATAYADSSPVIALTG----------QVPTKLIGNDAF-QE 111
Query: 166 ---LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVA-----CNLPAIPH 216
L F +T + + E+ E+ A A PV+I + L +
Sbjct: 112 IDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGELDLEKY 171
Query: 217 PTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELA 276
P ++ +P P G ++ AAE + +A +PV++AG + ++ A +EL+
Sbjct: 172 PIPAKIDLP-GYKPTT---FGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELS 227
Query: 277 DACGYAVAVMPSAKGLVPEHHPHFIG 302
+ V KG PE HP +G
Sbjct: 228 ELVKIPVCTTLMGKGAFPEDHPLALG 253
Score = 37.0 bits (86), Expect = 0.030
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
G++G+ A +G + P+ VIA GDG F + +Q+++T+ +I + +N
Sbjct: 419 GTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPVVICIFDN 473
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 66.3 bits (162), Expect = 2e-11
Identities = 69/263 (26%), Positives = 110/263 (41%), Gaps = 34/263 (12%)
Query: 52 RRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGA-C 110
R L + G V +PG L L D L + I +E AG+ A G AR+ G A C
Sbjct: 21 RLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVC 80
Query: 111 VVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQ 170
+ G +++ AIA A +++PL+CI G ++ GT D QE+ +
Sbjct: 81 MACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGT-----------DAFQEVDTYG 129
Query: 171 T---VTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISV-------ACNLPAIPHPTF 219
+T + +V ++E+ ++I A A PV+I + L A+P P
Sbjct: 130 ISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDVQTAVIELEALPAPAE 189
Query: 220 SREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
F E ++ AA +N A +PVL G + + A ELA+
Sbjct: 190 KDAAPAFD-----------EESIRDAAAMINAAKRPVLYLGGGVINSGAPARARELAEKA 238
Query: 280 GYAVAVMPSAKGLVPEHHPHFIG 302
+ A G++P+ HP +G
Sbjct: 239 QLPTTMTLMALGMLPKAHPLSLG 261
Score = 38.2 bits (89), Expect = 0.013
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
G++G+ + A +G A + PE++V+ GDGS + Q+++T I L+NN
Sbjct: 419 GTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNN 473
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 65.9 bits (161), Expect = 3e-11
Identities = 68/261 (26%), Positives = 113/261 (43%), Gaps = 28/261 (10%)
Query: 47 GRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYAR-SR 105
GR ARRL G +F++ G L D E G+ LI +E A +AA+ +A+ +R
Sbjct: 8 GRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREE-GIRLIDVRHEQTAAFAAEAWAKLTR 66
Query: 106 GVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE 165
G V+T G + ++A+A A PL+ + G + +G + QE
Sbjct: 67 VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSL-----------QE 115
Query: 166 LR---CFQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISV----ACNLPAIPHP 217
+ VT + A + E+A L+D A+ A+ PV++ A ++
Sbjct: 116 IDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHAFSMADDDGR 175
Query: 218 TFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELAD 277
+ +P +P A+ AA L +A +PV++AG + A A + LA+
Sbjct: 176 PGALTELPAGPTPD-------PDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAE 228
Query: 278 ACGYAVAVMPSAKGLVPEHHP 298
G V + +G+VP HP
Sbjct: 229 ELGIPVLMNGMGRGVVPADHP 249
Score = 35.5 bits (82), Expect = 0.087
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 434 YGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT 493
+G +G G L + P ++V+ GDG+F + DV T++R + + NNG +
Sbjct: 406 FGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNNGIWG 465
Query: 494 IE 495
+E
Sbjct: 466 LE 467
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 60.7 bits (148), Expect = 5e-11
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 434 YGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY- 492
G++G+ + A +G + P++ V+A GDG FQ+ Q+++T +R + ++NNGGY
Sbjct: 27 LGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQMNLQELATAVRYNLPITVVVLNNGGYG 86
Query: 493 ---TIEVEIHDGPY-----NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENAT 544
+ G Y + ++ L +A +V EEL EA++ A
Sbjct: 87 MTRGQQTPFGGGRYSGPDGKDLPPVDFAKLAEAYG-----AKGARVESPEELEEALKEAL 141
Query: 545 GPKKDCLCFIEV 556
+ D I+V
Sbjct: 142 --EHDGPALIDV 151
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 64.0 bits (156), Expect = 1e-10
Identities = 111/523 (21%), Positives = 195/523 (37%), Gaps = 110/523 (21%)
Query: 46 LGRHLARRLVQIGATD-----VFSVPGDFNLTLLDH-LIAEPG-LNLIGCCNELNAGYAA 98
L R LA+++ +IG VF++ G N+ + L L NE +AA
Sbjct: 13 LVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAA 72
Query: 99 DGYA---RSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHH 155
YA R R + A + G +++ A A A+ LP++ + G D R
Sbjct: 73 IAYAKQHRRRRIYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPG-----DVFATRQ--- 124
Query: 156 TIGLPD-FSQELR-----------CFQTVTCYQAVVNNLEDAHELIDTA-----VSTALK 198
PD Q+L CF+ V+ Y + E +L+ V T
Sbjct: 125 ----PDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPE---QLMSALPRAMRVMTDPA 177
Query: 199 ESKPVYISVACNLPAIPHP---TFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKP 255
+ PV +++ ++ A + +F + V P E + AA + A KP
Sbjct: 178 DCGPVTLALCQDVQAEAYDYPESFFEKRVWRIRRPPPD-----ERELADAAALIKSAKKP 232
Query: 256 VLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWG--------- 306
++VAG + + A A A+ G V + K + HP +G G
Sbjct: 233 LIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGV-GVTGTLAANR 291
Query: 307 ---------AVSTAF--FSVGYSLLLKKEKAVILQPD-----------RVVIANGPAFGC 344
+ T F+ G L K L + ++A+
Sbjct: 292 AAEEADLVIGIGTRLQDFTTGSKALFKNPGVKFLNLNVQPFDAYKHDALPLVADA----- 346
Query: 345 VLMKDFLKALSKRLKSNTTAYENYHRI------YVPEGQPPKCEPK----EPLRVNVLFQ 394
+ L+ALS+ L TA + E P + P + V+
Sbjct: 347 ---RAGLEALSEALGGYRTAAGWTDERERLKAAWDAEADAPTAKNHFLNTLPTQTQVIGA 403
Query: 395 HIQKMLSSETAVIAETGDSWFNCQKL---KLPKGCGYEFQMQYG--SIGWSVGATLGYAQ 449
+Q+ +S ++ V+ G + KL +P + ++YG +G+ + LG
Sbjct: 404 -VQRTISDDSVVVCAAGSLPGDLHKLWRAGVPGT----YHLEYGFSCMGYEIAGGLGAKA 458
Query: 450 SVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
+ P++ V +GDGS+ + +++T + G+K I+ L++N GY
Sbjct: 459 AEPDREVYVMVGDGSYMMLNSELATSVMLGKKIIVVLLDNRGY 501
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 63.3 bits (154), Expect = 2e-10
Identities = 74/261 (28%), Positives = 112/261 (42%), Gaps = 22/261 (8%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VG 108
+ R L+ G +F PG L + D L + G+ I +E A + ADGYAR+ G VG
Sbjct: 10 IVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVG 69
Query: 109 ACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE--- 165
+VT G + + IA AY +++P++ + G SN G D QE
Sbjct: 70 VVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGN-----------DAFQECDM 118
Query: 166 LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVA--CNLPAIPHPTFSRE 222
+ + V + +V + ED E+I A A PV I + C PAI HP E
Sbjct: 119 IGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDCLNPAILHPYEYPE 178
Query: 223 PVPF-SLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281
+ S +P S G + ++ + L A KPVL G ++ A ++LA+
Sbjct: 179 SIKMRSYNPTTS---GHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNL 235
Query: 282 AVAVMPSAKGLVPEHHPHFIG 302
V G P H + +G
Sbjct: 236 PVVSTLMGLGAFPGTHKNSLG 256
Score = 38.6 bits (90), Expect = 0.009
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
G++G+ + A +G ++P++ V+ GDGS Q+ Q++ST L+ I +NN
Sbjct: 421 GTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKIINLNN 475
>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family,
BZL_OCoD_HPCL subfamily, TPP-binding module; composed of
proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA
decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase
(2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves
the acyloin linkage of benzoin producing 2 molecules of
benzaldehyde and enabling the Pseudomonas to grow on
benzoin as the sole carbon and energy source. OCoD has a
role in the detoxification of oxalate, catalyzing the
decarboxylation of oxalyl-CoA to formate. 2-HPCL is a
peroxisomal enzyme which plays a role in the
alpha-oxidation of 3-methyl-branched fatty acids,
catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA
into formyl-CoA and a 2-methyl-branched fatty aldehyde.
All these enzymes depend on Mg2+ and TPP for activity.
Length = 172
Score = 59.5 bits (145), Expect = 2e-10
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 386 PLRVNVLFQHIQKMLSSETAVIAETGD------SWFNCQKLKLPKGCGYEFQMQYGSIGW 439
P RV +Q+ L + ++++ G+ +K + G +G++G
Sbjct: 1 PYRV---LHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGT-----FGTLGV 52
Query: 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEI 498
+G + A + P+KRV+ GDG+F + ++ T +R ++ + NNGG+ ++
Sbjct: 53 GLGYAIAAALARPDKRVVLVEGDGAFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDG 111
>gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase. Glyoxylate
carboligase, also called tartronate-semialdehyde
synthase, releases CO2 while synthesizing a single
molecule of tartronate semialdehyde from two molecules
of glyoxylate. It is a thiamine pyrophosphate-dependent
enzyme, closely related in sequence to the large subunit
of acetolactate synthase. In the D-glycerate pathway,
part of allantoin degradation in the Enterobacteriaceae,
tartronate semialdehyde is converted to D-glycerate and
then 3-phosphoglycerate, a product of glycolysis and
entry point in the general metabolism.
Length = 588
Score = 63.4 bits (154), Expect = 2e-10
Identities = 121/547 (22%), Positives = 198/547 (36%), Gaps = 87/547 (15%)
Query: 58 GATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG--VGACVVTFT 115
G T F VPG L A G+ I + A + A+GY R+ +G C+ T
Sbjct: 17 GITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSG 76
Query: 116 VGGLSVLNAIAGAYSENLPLICIVG-GP----NSNDYGTNRILHHTIGLPDFSQELRCFQ 170
G ++ + A ++++P++CI G P + D+ I I P +
Sbjct: 77 PAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDI--AAIAKPVSKMAV---- 130
Query: 171 TVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSP 230
TV V L+ A L+ + + P + VA I + EP+P P
Sbjct: 131 TVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVA----EIEFDPDTYEPLP-VYKP 185
Query: 231 KLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAK 290
+ A +E A E LN A +P++VAG + A A + E A+ G V
Sbjct: 186 AAT-----RAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTLMGW 240
Query: 291 GLVPEHHPHF-------------------------IGTYWGAVSTAFFSVGYSLLLKKEK 325
G +P+ H IG W T SV +K
Sbjct: 241 GCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTG--SVDVYTEGRKFV 298
Query: 326 AVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKE 385
V ++P ++ P G V KA K L + R+ C+ ++
Sbjct: 299 HVDIEPTQIGRVFAPDLGIV---SDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRK 355
Query: 386 ------------PLRVNVLFQHIQKMLSSETAVIAETGDSWF-NCQKLKLPK-----GCG 427
P++ +++ + K + + G S Q L + K CG
Sbjct: 356 RTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAGAQMLHVYKPRHWINCG 415
Query: 428 YEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLI 487
Q G +GW++ A LG + P++ V+A GD FQ ++++ + I L+
Sbjct: 416 -----QAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYIHVLV 470
Query: 488 NNG----------GYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEG-KCWTTKVFCEEEL 536
NN + ++ + N+ + VD + EG C +VF EE+
Sbjct: 471 NNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEEI 530
Query: 537 IEAIENA 543
A E A
Sbjct: 531 APAFEQA 537
>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 570
Score = 63.1 bits (153), Expect = 2e-10
Identities = 113/499 (22%), Positives = 188/499 (37%), Gaps = 70/499 (14%)
Query: 35 ATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNA 94
+ E T H+ + L ++G T VF PG L + D L E GL I +E A
Sbjct: 6 TYEKLQCEEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALY-ESGLKHILTRHEQAA 64
Query: 95 GYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRIL 153
+AA+GYAR+ G VG T G +++ +A AY +++PL+ I T ++
Sbjct: 65 IHAAEGYARASGKVGVVFATSGPGATNLVTGLADAYMDSIPLVVI----------TGQVA 114
Query: 154 HHTIGLPDFSQE--LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVACN 210
IG F + + VT + V ++ ++ A A PV I + +
Sbjct: 115 TPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKD 174
Query: 211 LP----------AIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAG 260
+ + P + EP P + M L +A ++KA +P+L G
Sbjct: 175 VQNEKVTSFYNEVVEIPGYKPEPRP--------DSMKLREVAKA----ISKAKRPLLYIG 222
Query: 261 PKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFI------GTYWGAVSTA--- 311
+ + +E A V G P P F+ GTY ++
Sbjct: 223 GGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECD 282
Query: 312 -FFSVG----------YSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKS 360
++G L K V + D A ++ D KAL L
Sbjct: 283 LLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHM 342
Query: 361 N--TTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSS----ETAVIAETGDS- 413
+ T E ++ + + P ++ + QH+ ++S E V E G
Sbjct: 343 SIHTQTDEWLQKVKTWKEEYPLSYKQKESELKP--QHVINLVSELTNGEAIVTTEVGQHQ 400
Query: 414 -WF-NCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQD 471
W + K K P+ + G++G+ A +G + E+ VI GD SFQ+ Q+
Sbjct: 401 MWAAHFYKAKNPRT--FLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQE 458
Query: 472 VSTMLRCGQKTIIFLINNG 490
+ T+ +F+INN
Sbjct: 459 LQTIAENNIPVKVFIINNK 477
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 62.8 bits (153), Expect = 2e-10
Identities = 131/548 (23%), Positives = 221/548 (40%), Gaps = 82/548 (14%)
Query: 62 VFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 120
VF PG L + D + + I +E A +AADGYAR+ G VG +VT G +
Sbjct: 21 VFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTN 80
Query: 121 VLNAIAGAYSENLPLICIVGG-PNSNDYGTNRILHHTIGLPDFSQELRCF---QTVTCYQ 176
+ +A AY +++PL+ I G PNS IG F QE+ + +
Sbjct: 81 AVTGLATAYMDSIPLVLISGQVPNS-----------LIGTDAF-QEIDAVGISRPCVKHN 128
Query: 177 AVVNNLEDAHELIDTAVSTALKESK-PVYISVACNLPA-IPHPTFSREPVPFSLSPKLSN 234
+V ++E+ ++ A A PV+I + ++ A + + +E SL
Sbjct: 129 YLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTATLGEFEYPKE---ISLKTYKPT 185
Query: 235 EMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVP 294
G ++ AAE + +A KP+ G ++ A EL G A+G++
Sbjct: 186 YKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLR 245
Query: 295 EHHPHFI------GTYWG--AVSTA--FFSVG----------YSLLLKKEKAVILQPD-- 332
P + G+Y A+S S+G S K K + + D
Sbjct: 246 SDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPS 305
Query: 333 ---RVVIANGPAFGCVLMKDFLKALSKRLKS-NTTAYENYHRIY--VPEGQPPKCE-PKE 385
++V A+ P G + K+ LK + + LK N T Y+ + I E P E E
Sbjct: 306 SISKIVNADYPIVGDL--KNVLKEMLEELKEENPTTYKEWREILKRYNELHPLSYEDSDE 363
Query: 386 PLRVNVLFQHIQKMLSSETAVIAETGDS--W------FNCQKLKLPKGCGYEFQMQYGSI 437
L+ + + + ++L + + + G W FN + G G++
Sbjct: 364 VLKPQWVIERVGELLGDDAIISTDVGQHQMWVAQFYPFNYPRQLATSG-------GLGTM 416
Query: 438 GWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG------- 490
G+ + A LG +VP+K VI GDGS + Q++ T + I ++NN
Sbjct: 417 GYGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINIILNNNFLGMVRQ 476
Query: 491 GYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDC 550
T E ++ ++ L ++ G G TTK EE +A++ A + D
Sbjct: 477 WQTFFYEERYSETDLSTQPDFVKLAESFG-GIGFRVTTK----EEFDKALKEAL--ESDK 529
Query: 551 LCFIEVLV 558
+ I+V +
Sbjct: 530 VALIDVKI 537
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 61.2 bits (149), Expect = 7e-10
Identities = 99/468 (21%), Positives = 173/468 (36%), Gaps = 91/468 (19%)
Query: 85 LIGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVG-GP 142
+ C +E+ A A GYA G A +V VG + L + A +P++ G P
Sbjct: 53 FVICPHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSP 112
Query: 143 NSND--YGT-NRILHHTIGLPDFSQELRCFQTVTCYQAV-----VNNLEDAHELIDTAVS 194
+ + G+ N +H ++QE+R Q + V + + E++ A+
Sbjct: 113 YTEEGELGSRNTRIH-------WTQEMRD-QGGLVREYVKWDYEIRRGDQIGEVVARAIQ 164
Query: 195 TALKESK-PVYISVACNLP----------AIPHPTFSREPVPFSLSPKLSNEMGLEAAVE 243
A+ E K PVY++ LP P P + P +
Sbjct: 165 IAMSEPKGPVYLT----LPREVLAEEVPEVKADAGRQMAPAPPAPDP---------EDIA 211
Query: 244 AAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAV-------AVMPSAKGLVPEH 296
AAE L A +PV++ R A+ + LA+ V PS
Sbjct: 212 RAAEMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVVNYPSD------- 264
Query: 297 HPHFIGTYWGA-VSTAFF------SVGY--SLLLKKEKAVILQ---------------PD 332
HP +G A ++ A V + + A ++Q P
Sbjct: 265 HPLHLGPDPRADLAEADLVLVVDSDVPWIPKKIRPDADARVIQIDVDPLKSRIPLWGFPC 324
Query: 333 RVVIANGPAFGCVLMKDFLKAL---SKRLKSNTTAYENYHRIYVPEGQ---PPKCEPKEP 386
+ I + +++ LK+L +R A RI + + + + P
Sbjct: 325 DLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Query: 387 LRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLG 446
+ L + ++ A++ E F ++ +L K Y G +GW++GA LG
Sbjct: 385 ITPAYLSYCLGEVADEYDAIVTEYP---FVPRQARLNKPGSYFGDGSAGGLGWALGAALG 441
Query: 447 YAQSVPEKRVIACIGDGSFQVTAQDVSTML--RCGQKTIIFLINNGGY 492
+ P++ VIA +GDGSF + + + R G ++ + NNGG+
Sbjct: 442 AKLATPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGW 489
>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 587
Score = 61.0 bits (148), Expect = 9e-10
Identities = 74/293 (25%), Positives = 118/293 (40%), Gaps = 48/293 (16%)
Query: 29 IQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGC 88
++ +P ++S L + L G ++ PG L + D L + + +
Sbjct: 8 FSTAESLSP--PAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLV 65
Query: 89 CNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDY 147
+E A +AADGYAR+ G VG +VT G + + IA AY +++P++ I G
Sbjct: 66 RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISG------- 118
Query: 148 GTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNN---LEDAHELIDTAVSTALKESKPVY 204
++ IG F QE C TV + +V + ++D +L +T K Y
Sbjct: 119 ---QVPTAAIGQDAF-QE--C-DTVGITRPIVKHNFLVKDVRDLAETV-------KKAFY 164
Query: 205 IS-------VACNLPAIPHPTFSREPVPFSLSPKLSNEM--------GLEAAVEAAAEFL 249
I+ V ++P S+ P + PK S EM G + A L
Sbjct: 165 IARTGRPGPVVVDIPK----DVSKTPCEYEY-PK-SVEMRSYNPVTKGHSGQIRKAVSLL 218
Query: 250 NKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIG 302
A +P + G + +A A +LAD GY V G P F+G
Sbjct: 219 LSAKRPYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLG 271
Score = 32.9 bits (75), Expect = 0.51
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490
G++G + +G + P+ V+ G+GS Q+ Q++ST L+ I +NN
Sbjct: 437 GTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDTPVKIISLNNR 492
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 57.6 bits (140), Expect = 1e-09
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI 494
G +GW + A +G A + P+++V+A IGDGSF T Q + T R G + ++NN GY
Sbjct: 49 GGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTIQALWTAARYGLPVTVVILNNRGYGA 108
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 58.3 bits (142), Expect = 5e-09
Identities = 69/271 (25%), Positives = 101/271 (37%), Gaps = 30/271 (11%)
Query: 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADG 100
P T G+ L L G VF VPG+ L +LD L E + +I C E A A+
Sbjct: 5 PRARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEA 64
Query: 101 YARSRG-VGACVVTFTVGGLSVLNAIAG---AYSENLPLICIVGGPNSNDYGTNRILHHT 156
Y + G G C VT G NA G A+ ++ P+I VG ++
Sbjct: 65 YGKLTGRPGICFVTRGPGA---TNASIGVHTAFQDSTPMILFVG----------QVARDF 111
Query: 157 IGLPDFSQEL---RCFQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNLP 212
F QE+ R F + + A +++ EL+ A A PV +
Sbjct: 112 REREAF-QEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVL------- 163
Query: 213 AIPHPTFSREPVPFSLSPKLSNEMGLEAA-VEAAAEFLNKAVKPVLVAGPKMRVAKACNA 271
A+P S P AA + AE L +A +P+++ G A
Sbjct: 164 ALPEDVLSETAEVPDAPPYRRVAAAPGAADLARLAELLARAERPLVILGGSGWTEAAVAD 223
Query: 272 FVELADACGYAVAVMPSAKGLVPEHHPHFIG 302
A+ G VA + L HP++ G
Sbjct: 224 LRAFAERWGLPVACAFRRQDLFDNRHPNYAG 254
Score = 46.4 bits (111), Expect = 3e-05
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY-T 493
GS+G+ + A + PE+ V+A GDG F + Q+++T ++ G I+ ++NNG Y T
Sbjct: 415 GSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYGLPIIVIVVNNGMYGT 474
Query: 494 I 494
I
Sbjct: 475 I 475
>gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit;
Validated.
Length = 612
Score = 58.5 bits (142), Expect = 6e-09
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 12 KPPCSDLASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNL 71
P + A+ + +V P T + + R L ++G VF +PG L
Sbjct: 1 PSPPTPAAAASAAPPPA--APAARPRIVAPERMTGAQAVVRSLEELGVDVVFGIPGGAIL 58
Query: 72 TLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYS 130
+ D L + + +E AG+AA+GYA++ G VG C+ T G +++ IA A
Sbjct: 59 PVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIADANM 118
Query: 131 ENLPLICIVGGPNSNDYGT 149
+++P++ I G GT
Sbjct: 119 DSVPVVAITGQVGRGLIGT 137
Score = 41.5 bits (98), Expect = 0.001
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTI---IFLINNGG 491
G++G++V A +G P+K V A GDG FQ+T Q+++T C + I + LINNG
Sbjct: 447 GTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELAT---CAIEGIPIKVALINNGN 503
Query: 492 Y 492
Sbjct: 504 L 504
Score = 35.7 bits (83), Expect = 0.071
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFI 301
+ AA+ + A +PVL G + A+A ELA+ G V A+G P+ HP +
Sbjct: 221 IREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHL 280
Query: 302 G 302
G
Sbjct: 281 G 281
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 57.6 bits (139), Expect = 9e-09
Identities = 68/249 (27%), Positives = 101/249 (40%), Gaps = 14/249 (5%)
Query: 58 GATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VGACVVTFTV 116
G VF PG L + D + G+ + +E A + ADGYARS G VG +VT
Sbjct: 18 GVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGP 77
Query: 117 GGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILH-HTIGLPDFSQELRCFQTVTCY 175
G + + IA AY++++PL+ + G SN GT+ +G+ + V +
Sbjct: 78 GATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGIS---------RPVVKH 128
Query: 176 QAVVNNLEDAHELIDTAVSTA-LKESKPVYISVACNLPAIPHPTFSRE-PVPFSLSPKLS 233
+V N ED I A A PV I + ++ P F+ E P SL
Sbjct: 129 SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM-VNPANKFTYEYPEEVSLRSYNP 187
Query: 234 NEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLV 293
G + ++ A + L A KPVL G + A+ + A V G
Sbjct: 188 TVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAY 247
Query: 294 PEHHPHFIG 302
P F+G
Sbjct: 248 PSTDKQFLG 256
Score = 41.1 bits (96), Expect = 0.002
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
G++G+ + A +G + PE V+ GDGS Q+ Q++ST + +I +NN
Sbjct: 421 GTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIVSLNN 475
>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function
prediction only].
Length = 592
Score = 57.2 bits (138), Expect = 1e-08
Identities = 120/557 (21%), Positives = 203/557 (36%), Gaps = 99/557 (17%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSR--GVGACV 111
L + G T F VPG L G+ I + A + A+GY R+ +G C+
Sbjct: 14 LEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCI 73
Query: 112 VTFTVGGLSVLNAIAGAYSENLPLICIVG-GP----NSNDYGTNRILHHTIGLPDFSQEL 166
T G ++ + A ++++P++CI G P + D+ I I P +
Sbjct: 74 GTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDI--EAIAKPVSKWAV 131
Query: 167 RCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPF 226
TV V L+ A L+ + + P + VA I EP+P
Sbjct: 132 ----TVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVA----EIEFDPDMYEPLPV 183
Query: 227 SLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVM 286
P + E A L +A +P++VAG + A A E A+ G V V+
Sbjct: 184 Y-KPAAT-----RVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTG--VPVI 235
Query: 287 PS--AKGLVPEHHPHF-------------------------IGTYWGAVSTAFFSVGYSL 319
P+ G +P+ HP IG W T SV
Sbjct: 236 PTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTG--SVEVYT 293
Query: 320 LLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPP 379
+K V ++P ++ P G V D AL L ++ ++ +
Sbjct: 294 EGRKFIHVDIEPTQIGRVFCPDLGIV--SDAKAAL-TLLLDVAQEWKKAGKLPCRKAWVA 350
Query: 380 KCEPKE------------PLRVNVLFQHIQKMLSSETAVIAETGDSWF-NCQKLKLPK-- 424
C+ ++ P++ +++ + K + + G S Q L + K
Sbjct: 351 DCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPR 410
Query: 425 ---GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQK 481
CG Q G +GW++ A LG + P++ V+A GD FQ ++++ +
Sbjct: 411 HWINCG-----QAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIP 465
Query: 482 TIIFLINNG----------GYTIEVEIHDGPYNVIKNWNYTGL----VDAIHNGEG-KCW 526
I L+NN + ++ + +N N + + VD + EG C
Sbjct: 466 YIHVLVNNAYLGLIRQAQRAFDMDYCVQLA----FENINSSEVNGYGVDHVKVAEGLGCK 521
Query: 527 TTKVFCEEELIEAIENA 543
+VF E++ A E A
Sbjct: 522 AIRVFKPEDIAPAFEQA 538
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 57.1 bits (138), Expect = 2e-08
Identities = 70/271 (25%), Positives = 113/271 (41%), Gaps = 25/271 (9%)
Query: 42 SESTLGRHLARRLVQI----GATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYA 97
+ ST AR +++ G +F PG + + D L + L I +E A +A
Sbjct: 2 TGSTEKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELY-DSDLRHILVRHEQAAAHA 60
Query: 98 ADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHT 156
ADGYAR+ G VG CV T G +++ IA AY +++P++ + T ++
Sbjct: 61 ADGYARATGKVGVCVATSGPGATNLVTGIATAYMDSVPIVAL----------TGQVPRSM 110
Query: 157 IGLPDFSQELRC---FQTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISVACNLP 212
IG F QE +T + +V + +D +I A A PV I + ++
Sbjct: 111 IGNDAF-QEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVT 169
Query: 213 AIPHPTFSREPVPF-SLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNA 271
+ V P G ++ AAE + KA +P++ AG + + A
Sbjct: 170 TAEIDFDYPDKVELRGYKPTYK---GNPQQIKRAAELIMKAERPIIYAGGGVISSNASEE 226
Query: 272 FVELADACGYAVAVMPSAKGLVPEHHPHFIG 302
VELA+ V G +P HP +G
Sbjct: 227 LVELAETIPAPVTTTLMGIGAIPTEHPLSLG 257
Score = 45.9 bits (109), Expect = 5e-05
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490
G++G+ A +G P+K VI GDGSFQ+ +Q+++T ++ I+ ++NNG
Sbjct: 414 GTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVAILNNG 469
>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
Acetolactate synthase (EC 2.2.1.6) combines two
molecules of pyruvate to yield 2-acetolactate with the
release of CO2. This reaction may be involved in either
valine biosynthesis (biosynthetic) or conversion of
pyruvate to acetoin and possibly to 2,3-butanediol
(catabolic). The biosynthetic type, described by
TIGR00118, is also capable of forming
acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
isoleucine biosynthesis. The family described here, part
of the same larger family of thiamine
pyrophosphate-dependent enzymes (pfam00205, pfam02776)
is the catabolic form, generally found associated with
in species with acetolactate decarboxylase and usually
found in the same operon. The model may not encompass
all catabolic acetolactate synthases, but rather one
particular clade in the larger TPP-dependent enzyme
family [Energy metabolism, Fermentation].
Length = 539
Score = 56.3 bits (136), Expect = 3e-08
Identities = 109/521 (20%), Positives = 183/521 (35%), Gaps = 123/521 (23%)
Query: 50 LARRLVQIGATDVFSVPGD-----FNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
+ +L G VF +PG F+ L D G+ LI +E NA + A R
Sbjct: 5 VVDQLENQGVRYVFGIPGAKIDRVFD-ALED-----KGIELIVVRHEQNAAFMAQAVGRI 58
Query: 105 RG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFS 163
G G +VT G +++ +A A SE P++ I G D ++ H ++
Sbjct: 59 TGKPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRAD--LLKLTHQSM------ 110
Query: 164 QELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKP--VYISVACNLPAIPHPTFSR 221
+ F+ +T Y A V + + E++ A A + KP ++S+ ++ P S
Sbjct: 111 DNVALFRPITKYSAEVQDPDALSEVVANAFRAA-ESGKPGAAFVSLPQDVVDSP---VSV 166
Query: 222 EPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281
+ +P S +PKL + A++ AE + A PVL+ G + + A L
Sbjct: 167 KAIPASYAPKL--GAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQL 224
Query: 282 AVAVMPSAKGLVP-EHHPHFIGTYWGAVSTAFF--SVGYSLLLKKEKAVI---------- 328
V G V E HF G F G LLK+ VI
Sbjct: 225 PVVETFQGAGAVSRELEDHFFG------RVGLFRNQPG-DRLLKQADLVITIGYDPIEYE 277
Query: 329 -------------------------LQPDRVVIAN---------GPAFGCVLMKDFLKAL 354
QPD ++ + G L D L L
Sbjct: 278 PRNWNSENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIPGYELPPDALAIL 337
Query: 355 SKRLKSNTTAYENYHRIYVPEGQPPKCEPKE----PLRVNVLFQHIQKMLSSETAVIAET 410
+ K+ PL + + +Q +++ + V +
Sbjct: 338 EDL------------KQQREALDRVPATLKQAHLHPLE---IIKAMQAIVTDDVTVTVDM 382
Query: 411 GDS--W-------FNCQKLKLPKGCGYEFQMQYGSIG--WSVGATLGYAQSVPEKRVIAC 459
G W + + L + G MQ + W++GA L P +V++
Sbjct: 383 GSHYIWMARYFRSYRARHLLISNG------MQTLGVALPWAIGAAL----VRPNTKVVSV 432
Query: 460 IGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD 500
GDG F ++ ++ T +R + + N+ GY + VE +
Sbjct: 433 SGDGGFLFSSMELETAVRLKLNIVHIIWNDNGYNM-VEFQE 472
>gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 595
Score = 55.9 bits (135), Expect = 4e-08
Identities = 67/262 (25%), Positives = 108/262 (41%), Gaps = 41/262 (15%)
Query: 40 NPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAAD 99
P + T + + L G +F PG L + D + + + I +E AG+AA+
Sbjct: 7 MPRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAE 66
Query: 100 GYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIG 158
GYARS G G +VT G + + + A +++PL+CI G ++ H IG
Sbjct: 67 GYARSTGKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITG----------QVPTHLIG 116
Query: 159 LPDFSQELRCFQTV------TCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNL 211
F QE C TV T + +V ++ D +I A A PV + + ++
Sbjct: 117 SDAF-QE--C-DTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172
Query: 212 ---PAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLV-------AGP 261
P + PV S PK+ + A+ A E L A +PV+ +GP
Sbjct: 173 QFATGTYTPP-QKAPVHVSYQPKVKGDA---EAITEAVELLANAKRPVIYSGGGVINSGP 228
Query: 262 KMRVAKACNAFVELADACGYAV 283
+A EL + G+ +
Sbjct: 229 -----EASRLLRELVELTGFPI 245
Score = 36.6 bits (85), Expect = 0.036
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
G++G+ + A LG + P+ VI GD S Q+ Q++ST ++ IF++NN
Sbjct: 430 GTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLPVKIFILNN 484
>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit;
Validated.
Length = 578
Score = 55.9 bits (135), Expect = 4e-08
Identities = 80/288 (27%), Positives = 110/288 (38%), Gaps = 46/288 (15%)
Query: 35 ATPLVNP---SESTLGRHLARRLVQIGATDVF--SVPGDFNLTLLDHLIAEP-GLNLIGC 88
+ PL P T+ +AR L + G +F S+P L AE G+ I
Sbjct: 2 SKPLSAPGFTLNGTVAHAIARALKRHGVEQIFGQSLPSAL------FLAAEAIGIRQIAY 55
Query: 89 CNELNAGYAADGYAR-SRGVGACVVTFTVGGLSVL--NAIAGAYSENLPLICIVGGPNSN 145
E G ADGYAR S V VVT G + L +A A ++P++ +V N +
Sbjct: 56 RTENAGGAMADGYARVSGKVA--VVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRD 113
Query: 146 DYGTNRI--LHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPV 203
N L H I L FQ+ T + V E + +D A TA +P
Sbjct: 114 QTDRNAFQELDH-IAL---------FQSCTKWVRRVTVAERIDDYVDQAF-TAATSGRPG 162
Query: 204 YISVACNLPAIPHPTFSREPVPFSLSPKLSNEMG---------LEAAVEAAAEFLNKAVK 254
V LPA + SN +G + AA L +A +
Sbjct: 163 --PVVLLLPA----DLLTAAAAAP-AAPRSNSLGHFPLDRTVPAPQRLAEAASLLAQAQR 215
Query: 255 PVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIG 302
PV+VAG + ++ A A L G VA KG V E HP +G
Sbjct: 216 PVVVAGGGVHISGASAALAALQSLAGLPVATTNMGKGAVDETHPLSLG 263
Score = 48.2 bits (115), Expect = 1e-05
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 386 PLRVNVLFQHIQKMLSSETAVIAETGDS--WFNCQKLKLPKGCGYEFQMQYG--SIGWSV 441
P+R + +Q +L+ +T V+A+ S W L + G F G +GW V
Sbjct: 386 PIRPERIMAELQAVLTGDTIVVADASYSSIWV-ANFLTARRA-GMRFLTPRGLAGLGWGV 443
Query: 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG--GYTIEVE 497
+G + P VI +GDG F ++ T R G I ++NNG G+ E
Sbjct: 444 PMAIGAKVARPGAPVICLVGDGGFAHVWAELETARRMGVPVTIVVLNNGILGFQKHAE 501
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 54.0 bits (130), Expect = 1e-07
Identities = 63/262 (24%), Positives = 99/262 (37%), Gaps = 18/262 (6%)
Query: 47 GRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG 106
L R L G ++ PG L + D L + + I +E A + ADGYAR+ G
Sbjct: 7 AEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATG 66
Query: 107 -VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE 165
G +VT G + + IA AY +++P++ + G S G D QE
Sbjct: 67 KTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGE-----------DAFQE 115
Query: 166 ---LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALK-ESKPVYISVACNLPAIPHPTFSR 221
+ + + + +V + + E+I A A PV + + ++ P F
Sbjct: 116 TDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDMTN-PAEKFEY 174
Query: 222 E-PVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280
E P L G + A E L A +PV+ +G + + A ELA
Sbjct: 175 EYPKKVKLRSYSPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLN 234
Query: 281 YAVAVMPSAKGLVPEHHPHFIG 302
V G P F+G
Sbjct: 235 LPVTNTLMGLGGFPGTDRQFLG 256
Score = 36.6 bits (85), Expect = 0.037
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490
G++G+ + A +G + P++ V G+GS Q+ Q++ST L+ G I +NNG
Sbjct: 423 GTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVKIINLNNG 478
>gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional.
Length = 597
Score = 53.4 bits (129), Expect = 2e-07
Identities = 63/271 (23%), Positives = 106/271 (39%), Gaps = 27/271 (9%)
Query: 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLI-AEPGLNLIGCCNELNAGYAADGYA 102
T+ + RL + G VF PGD LL L A+ + +E A + A +A
Sbjct: 3 QTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHA 62
Query: 103 R-SRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
+ + VG C+ T G + +LN + A +++P++ IVG G
Sbjct: 63 KFTGEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAALGG-----------H 111
Query: 162 FSQEL---RCFQTVTC-YQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHP 217
+ QE+ F+ V + +V E L+D AV TAL E + + ++ + +
Sbjct: 112 YQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDVQELEYE 171
Query: 218 TFSRE--PVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNA---F 272
V + + + + AAE LN K ++ G A A A
Sbjct: 172 PPPHAHGTVHSGVGYTRPRVVPYDEDLRRAAEVLNAGRKVAILVG-----AGALGATDEV 226
Query: 273 VELADACGYAVAVMPSAKGLVPEHHPHFIGT 303
+ +A+ G VA K +P+ P G+
Sbjct: 227 IAVAERLGAGVAKALLGKAALPDDLPWVTGS 257
>gnl|CDD|232855 TIGR00173, menD,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylic-acid synthase. MenD was thought until
recently to act as SHCHC synthase, but has recently been
shown to act instead as SEPHCHC synthase. Conversion of
SEPHCHC into SHCHC and pyruvate may occur spontaneously
but is catalyzed efficiently, at least in some
organisms, by MenH (see TIGR03695). 2-oxoglutarate
decarboxylase/SHCHC synthase (menD) is a thiamine
pyrophosphate enzyme involved in menaquinone
biosynthesis [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 430
Score = 52.2 bits (126), Expect = 5e-07
Identities = 83/342 (24%), Positives = 128/342 (37%), Gaps = 79/342 (23%)
Query: 46 LGRHLARRLVQIGATDVFSVPGDFN--LTLLDHLIAEPGLNLIGCCNELNAGYAADGYAR 103
L LV++G V PG + L L L P L + +E +AG+ A G A+
Sbjct: 1 WASVLVEELVRLGVRHVVISPGSRSTPLALA--LAEHPRLRVHVHIDERSAGFFALGLAK 58
Query: 104 SRGVGACVVTFTVGGLSVLN---AIAGAYSENLPLICI----------VGGPNSND---- 146
+ G VV T G +V N A+ AY +PLI + G + D
Sbjct: 59 ASGRPVAVVC-T-SGTAVANLLPAVIEAYYSGVPLIVLTADRPPELRGCGANQTIDQPGL 116
Query: 147 YGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYI 205
+G+ + LP+ + LR +D AV+ A PV+I
Sbjct: 117 FGSYVRWSVDLPLPEADEPLR----------------YLRSTVDRAVAQAQGAPPGPVHI 160
Query: 206 SVA-------CNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLV 258
+V L P + R VP + + +++ + L +A + +++
Sbjct: 161 NVPFREPLYPDPLLQ-PLQPWLRSGVPTVSTGPPVLD---PESLDDLWDRLRQAKRGLII 216
Query: 259 AGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFFSVGYS 318
AGP + A+ A LA+A G+ + P + GL HP I Y
Sbjct: 217 AGP-LAGAEDAEALAALAEALGWPLLADPLS-GLRGGPHPLVIDH-------------YD 261
Query: 319 LLLKKEKAVI-LQPDRVVIANGPAFGCVLMKDFLKALSKRLK 359
LLL + LQPD V+ FG +SKRL+
Sbjct: 262 LLLANAELREELQPDLVIR-----FGGPP-------VSKRLR 291
>gnl|CDD|238961 cd02003, TPP_IolD, Thiamine pyrophosphate (TPP) family, IolD
subfamily, TPP-binding module; composed of proteins
similar to Rhizobium leguminosarum bv. viciae IolD. IolD
plays an important role in myo-inositol catabolism.
Length = 205
Score = 50.4 bits (121), Expect = 5e-07
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 427 GYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFL 486
GY + Y +G+ + A LG + P++ V +GDGS+ + ++ T ++ G K II L
Sbjct: 40 GYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLHSEIVTAVQEGLKIIIVL 99
Query: 487 INNGGY 492
+N G+
Sbjct: 100 FDNHGF 105
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 51.4 bits (123), Expect = 8e-07
Identities = 102/487 (20%), Positives = 187/487 (38%), Gaps = 94/487 (19%)
Query: 52 RRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VGAC 110
R L G ++ +PGD L+D I + + + +E A AA A+ G AC
Sbjct: 10 RVLEDNGIQRIYGIPGDSIDPLVD-AIRKSKVKYVQVRHEEGAALAASVEAKITGKPSAC 68
Query: 111 VVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQEL---R 167
+ T G + +LN + A ++ P+I + G S+ ++ H D+ QE+ +
Sbjct: 69 MGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESD------MIGH-----DYFQEVNLTK 117
Query: 168 CFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLP------AIPHPTFSR 221
F V + ++ N E+A +I A+ A+ + +I NLP + +
Sbjct: 118 LFDDVAVFNQILINPENAEYIIRRAIREAISKRGVAHI----NLPVDILRKSSEYKGSKN 173
Query: 222 EPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMR-VAKACNAFVELADACG 280
V K S + A E + ++ KPVL+ G R + K N F A+ G
Sbjct: 174 TEVG---KVKYSIDFS------RAKELIKESEKPVLLIGGGTRGLGKEINRF---AEKIG 221
Query: 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFFSVGYSLLLKKEKAVILQPDRVVIANGP 340
+ + KG++P+ P +G G LL K + ++I G
Sbjct: 222 APIIYTLNGKGILPDLDPKVMG-------------GIGLLGTKPSIEAMDKADLLIMLGT 268
Query: 341 AFGCVLMKDFLKALSKRLKSNTTAYENYHRIYV------PEGQPPKCEPKE--------- 385
+F V +FL +K ++ + R+ V P + + +E
Sbjct: 269 SFPYV---NFLNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNIDIEEKSDKFYEEL 325
Query: 386 --------------------PLRVNVLFQHIQKMLSSETAVIAETGDS--WFNCQKLKLP 423
P++ + + + + ++ +TG+ W + +
Sbjct: 326 KGKKEDWLDSISKQENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTA-RHFRAS 384
Query: 424 KGCGYEFQMQYGSIGWSVGATLGYAQSVPEKR-VIACIGDGSFQVTAQDVSTMLRCGQKT 482
+ F GS+G V ++G + +V KR VI+ +GDG F +T ++ T +
Sbjct: 385 GEQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPV 444
Query: 483 IIFLINN 489
I + NN
Sbjct: 445 KIIIYNN 451
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 51.0 bits (122), Expect = 1e-06
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 52 RRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VGAC 110
R L+ G VF PG L + D L G++ + +E A + ADG AR+ G VG
Sbjct: 12 RSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVV 71
Query: 111 VVTFTVGGLSVLNAIAGAYSENLPLICIVG 140
+VT G + + IA AY +++PL+ + G
Sbjct: 72 LVTSGPGATNAITGIATAYMDSIPLVVLSG 101
Score = 42.5 bits (100), Expect = 5e-04
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
G++G+ + A LG ++PE+ V+ GDGS Q+ Q++ST L+ ++ +NN
Sbjct: 421 GTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNN 475
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 50.9 bits (122), Expect = 1e-06
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 54 LVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIG---CCNELNAGYAADGYARSRG-VGA 109
LV+ G +F PG L + D L A LI +E A +AADGYARS G VG
Sbjct: 20 LVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGV 79
Query: 110 CVVTFTVGGLSVLNAIAGAYSENLPLICIVG 140
C T G +++ IA A +++PL+ I G
Sbjct: 80 CFATSGPGATNLVTGIATAQMDSVPLLVITG 110
Score = 39.3 bits (92), Expect = 0.005
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490
G++G+ + A +G + P + VI GD SFQ+ Q++ T+ + I +INN
Sbjct: 430 GTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNLPIKIIIINNK 485
>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the
condensation of two molecules of pyruvate to give the
acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the
precursor of the branched chain amino acids, valine and
leucine. AHAS also catalyzes the condensation of
pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In
addition to requiring TPP and a divalent metal ion as
cofactors, AHAS requires FAD.
Length = 186
Score = 47.1 bits (113), Expect = 5e-06
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490
G++G+ + A +G + P+K VI CI GDGSFQ+ Q+++T + I ++NNG
Sbjct: 50 GTMGFGLPAAIGAKVARPDKTVI-CIDGDGSFQMNIQELATAAQYNLPVKIVILNNG 105
>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate
synthase (ALS) subfamily, TPP-binding module; composed
of proteins similar to Klebsiella pneumoniae ALS, a
catabolic enzyme required for butanediol fermentation.
ALS catalyzes the conversion of 2 molecules of pyruvate
to acetolactate and carbon dioxide. ALS does not contain
FAD, and requires TPP and a divalent metal cation for
activity.
Length = 177
Score = 46.5 bits (111), Expect = 6e-06
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 439 WSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
++GA L Y P+++V+A GDG F + +Q++ T +R ++ + N+ GY
Sbjct: 56 GAIGAKLVY----PDRKVVAVSGDGGFMMNSQELETAVRLKIPLVVLIWNDNGY 105
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase [Cellular processes, Detoxification].
Length = 554
Score = 48.3 bits (115), Expect = 8e-06
Identities = 117/501 (23%), Positives = 186/501 (37%), Gaps = 81/501 (16%)
Query: 43 ESTLGRHLA-RRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
T G HL L G ++ V G +T L L G+ IG +E +AGYAA
Sbjct: 1 ALTDGFHLVIDALKLNGINTIYGVVG-IPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAA 59
Query: 102 A-RSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160
++ G C+ G L+ L A+A A + P+I I G S++ H + L
Sbjct: 60 GFLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISG---SSE-------RHIVDLQ 109
Query: 161 --DFSQELRCFQTVTCYQAV---VNNLEDAHELIDTAVSTALKESKP--VYISVACNLPA 213
D+ +E+ + V ED I A+ TA+ +P VY+ + +
Sbjct: 110 QGDY-EEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAV-SGRPGGVYLDLPAAVLG 167
Query: 214 IPHPTFSREPVPFSL------SPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAK 267
T E +L +PK + +V+ A E L A +P+++ G A+
Sbjct: 168 ---QTMEAEKAKKTLVKVVDPAPKQ---LPSPDSVDRAVELLKDAKRPLILLGKGAAYAQ 221
Query: 268 ACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF------FSVGYSL-- 319
A E + G M AKGL+P+ HP A S A VG L
Sbjct: 222 ADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAA---ARSFALAEADVVMLVGARLNW 278
Query: 320 LLKKEKAVILQPDRVVI----------ANGPAFGCVL--MKDFLKALSKRLKSN--TTAY 365
LL K + D I +N P V+ + ++AL K+
Sbjct: 279 LLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPA 338
Query: 366 ENYHRIYV-PEGQPPKCEPK--------------EPLRVNVLFQHIQKMLSSETAVIAET 410
+ + I E K + E +R +VL + L +E A +
Sbjct: 339 DWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIR-DVLKDNPDIYLVNEGANTLDL 397
Query: 411 GDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQ 470
+ + K + G M G +G+++ A + K V+A GD +F +
Sbjct: 398 ARNVIDMYKPRHRLDVGTWGVMGIG-MGYAIAAAVETG-----KPVVALEGDSAFGFSGM 451
Query: 471 DVSTMLRCGQKTIIFLINNGG 491
+V T+ R + + NNGG
Sbjct: 452 EVETICRYNLPVCVVIFNNGG 472
>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate
oxidase (POX) subfamily, TPP-binding module; composed of
proteins similar to Lactobacillus plantarum POX, which
plays a key role in controlling acetate production under
aerobic conditions. POX decarboxylates pyruvate,
producing hydrogen peroxide and the energy-storage
metabolite acetylphosphate. It requires FAD in addition
to TPP and a divalent cation as cofactors.
Length = 178
Score = 44.8 bits (107), Expect = 2e-05
Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 386 PLRVNVLFQHIQKMLSSETAVIAETGDS--WFNCQKLKLPKGCGYEFQMQYGSIGWSVGA 443
P+ + + K + + G+ W + L++ + ++G +
Sbjct: 1 PIHPERVAAELNKRAPDDAIFTIDVGNVTVWAA-RHLRMNGKQRFILSGLLATMGNGLPG 59
Query: 444 TLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490
+ + P+++VIA GDG F + D+ T ++ I+ + NN
Sbjct: 60 AIAAKLAYPDRQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVFNNS 106
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 45.9 bits (109), Expect = 5e-05
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 58 GATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VGACVVTFTV 116
G VF+ PG ++ + L + + C +E +AA+GYA++ G VG C+ T
Sbjct: 27 GVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGP 86
Query: 117 GGLSVLNAIAGAYSENLPLICIVG 140
G +++ +A A +++PL+ I G
Sbjct: 87 GATNLVTGLADALLDSVPLVAITG 110
Score = 33.6 bits (77), Expect = 0.30
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
G++G+ + A +G A + P+ V+ GDGSF + Q+++T+ I ++NN
Sbjct: 426 GAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIMVLNN 480
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 45.2 bits (108), Expect = 7e-05
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQK--TIIFLINNGGY 492
G+IG + G A + P+++V+A GDGS T Q + T R T+IF N Y
Sbjct: 385 GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIF--ANRAY 442
Query: 493 TI 494
I
Sbjct: 443 AI 444
Score = 34.4 bits (80), Expect = 0.17
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGA 109
L R LV G F+ PG + + L PG+ + E A AADGYAR G A
Sbjct: 7 LVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPA 66
Query: 110 CVVTFTVGGLSVLNAIAGAYSENL--------PLICIVG 140
+ GL+ N +A NL P++ IVG
Sbjct: 67 ATLLHLGPGLA--NGLA-----NLHNARRARTPIVNIVG 98
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 44.8 bits (107), Expect = 9e-05
Identities = 62/239 (25%), Positives = 94/239 (39%), Gaps = 45/239 (18%)
Query: 54 LVQIGATDVFSVPG---D--FNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-V 107
L+ G VF +PG D F+ L D G LI +E NA + A R G
Sbjct: 15 LINQGVKYVFGIPGAKIDRVFD-ALED-----SGPELIVTRHEQNAAFMAAAIGRLTGKP 68
Query: 108 GACVVTFTVGGLSVLNAIAG---AYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ 164
G +VT G V N G A +E P++ I G D + H ++ +
Sbjct: 69 GVVLVT---SGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRL--KRTHQSMD----NV 119
Query: 165 ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKP--VYISVACNLPA--IPHPTFS 220
L F+ +T Y A V + ++ E++ A A + +P ++S LP + P +
Sbjct: 120 AL--FRPITKYSAEVQDPDNLSEVLANAFRAA-ESGRPGAAFVS----LPQDVVDAPV-T 171
Query: 221 REPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMR-----VAKACNAFVE 274
+ + PKL + AE + A PVL+ G MR V A +E
Sbjct: 172 SKAIAPLSKPKLGP--ASPEDINYLAELIKNAKLPVLLLG--MRASSPEVTAAIRRLLE 226
Score = 31.7 bits (73), Expect = 1.1
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 439 WSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGY 492
W++ A L P K+V++ GDG F +A ++ T +R + + N+G Y
Sbjct: 422 WAIAAALVR----PGKKVVSVSGDGGFLFSAMELETAVRLKLNIVHIIWNDGHY 471
>gnl|CDD|238964 cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) family, Gcl
subfamily, TPP-binding module; composed of proteins
similar to Escherichia coli glyoxylate carboligase
(Gcl). E. coli glyoxylate carboligase, plays a key role
in glyoxylate metabolism where it catalyzes the
condensation of two molecules of glyoxylate to give
tartronic semialdehyde and carbon dioxide. This enzyme
requires TPP, magnesium ion and FAD as cofactors.
Length = 202
Score = 43.4 bits (102), Expect = 1e-04
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 33/182 (18%)
Query: 383 PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWF-NCQKLKLPK-----GCGYEFQMQYGS 436
P +P RV ++ + K + + G S Q L + K CG Q G
Sbjct: 7 PIKPQRV---YEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCG-----QAGP 58
Query: 437 IGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG------ 490
+GW+V A LG A + P+++V+A GD FQ ++++ + I L+NN
Sbjct: 59 LGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIR 118
Query: 491 ----GYTIEVEIHDGPYNVIKNWNYTGL----VDAIHNGEG-KCWTTKVFCEEELIEAIE 541
+ ++ +++ +N N + L VD + EG C +V EEL A E
Sbjct: 119 QAQRAFDMDYQVNLA----FENINSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFE 174
Query: 542 NA 543
A
Sbjct: 175 QA 176
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 44.7 bits (106), Expect = 1e-04
Identities = 76/287 (26%), Positives = 111/287 (38%), Gaps = 26/287 (9%)
Query: 28 TIQSSVPATPLVNPSESTLGRH-LARRLVQIGATDVFSVPGDFNLTLLDHL-IAEPG--L 83
T + G + L L + G +F PG L + D L AE L
Sbjct: 2 TSSPPKIGDSTTVTPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWL 61
Query: 84 NLIGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGP 142
I +E A +AADGYAR+ G VG C T G +++ IA A +++P++ I G
Sbjct: 62 KHILVRHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITG-- 119
Query: 143 NSNDYGTNRILHHTIGLPDFSQELRCFQT---VTCYQAVVNNLEDAHELIDTAVSTALK- 198
++ IG F QE F + + VV + D ++ A A
Sbjct: 120 --------QVPRPAIGTDAF-QETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSG 170
Query: 199 ESKPVYISVACNLPAIPHPTFSREPV-PFSLSPK--LSNEMGLEAAVEAAAEFLNKAVKP 255
PV I + + + F PV P S+ P G + AA + + +A +P
Sbjct: 171 RPGPVLIDIPKD---VGQEEFDYVPVEPGSVKPPGYRPTVKGNPRQINAALKLIEEAERP 227
Query: 256 VLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIG 302
+L G A A ELA+ V KG EHHP +G
Sbjct: 228 LLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVG 274
Score = 38.9 bits (91), Expect = 0.007
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490
G++G+ + A +G ++P++ VI CI GD SF + Q++ T+ + G +INNG
Sbjct: 434 GTMGFGMPAAMGVKVALPDEEVI-CIAGDASFLMNIQELGTLAQYGINVKTVIINNG 489
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 44.4 bits (105), Expect = 1e-04
Identities = 46/220 (20%), Positives = 83/220 (37%), Gaps = 25/220 (11%)
Query: 91 ELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTN 150
E+ A AA + +G C + G +LN + A +++P++ +VG T
Sbjct: 48 EVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVG-----QVPTT 102
Query: 151 RILHHTIGLPDFSQELR---CFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISV 207
+ D QE+ + V Y E +ID A+ A + +++
Sbjct: 103 GMNM------DTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTI 156
Query: 208 ACNLP--AIPHPTFSREPVPFSLS--PKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKM 263
+ IP + V + P E AV A + L A +PV+ G
Sbjct: 157 PVDFGWQEIPDNDYYASSVSYQTPLLPAPDVE-----AVTRAVQTLKAAERPVIYYGIGA 211
Query: 264 RVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGT 303
R KA L++ + AKG++ + +P ++G+
Sbjct: 212 R--KAGEELEALSEKLKIPLISTGLAKGIIEDRYPAYLGS 249
Score = 30.6 bits (69), Expect = 2.8
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 386 PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQK-LKLPKGCGYEFQMQYGSIGWSVGAT 444
PL+ +++ I K+ + + GD N + LK+ + + ++G V
Sbjct: 358 PLQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWITSNLFATMGVGVPGA 417
Query: 445 LGYAQSVPEKRVIACIGDGSFQVTAQDVST 474
+ + P+++V GDG+F +T QD+ T
Sbjct: 418 IAAKLNYPDRQVFNLAGDGAFSMTMQDLLT 447
>gnl|CDD|235721 PRK06163, PRK06163, hypothetical protein; Provisional.
Length = 202
Score = 42.9 bits (101), Expect = 2e-04
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 400 LSSETAVIAETG----DSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKR 455
L E AVI G D W Q+ P+ F M GS+G + LG A + P++R
Sbjct: 26 LKDEEAVIGGIGNTNFDLWAAGQR---PQ----NFYM-LGSMGLAFPIALGVALAQPKRR 77
Query: 456 VIACIGDGSFQVTAQDVSTMLRCGQKTIIFLI-NNGGYTI 494
VIA GDGS + + T+ K + ++ +NG Y I
Sbjct: 78 VIALEGDGSLLMQLGALGTIAALAPKNLTIIVMDNGVYQI 117
>gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional.
Length = 591
Score = 42.7 bits (101), Expect = 5e-04
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 240 AAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPS--AKGLVPEHH 297
A +E A E LN A +P++VAG + A A + VE A+ G V V+P+ G +P+ H
Sbjct: 191 AQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTG--VPVIPTLMGWGAIPDDH 248
Query: 298 PHFIG 302
P G
Sbjct: 249 PLMAG 253
Score = 36.9 bits (86), Expect = 0.033
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 58 GATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSR--GVGACVVTFT 115
G T F VPG + G+ I + A + A+GY R+ +G C+ T
Sbjct: 18 GVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGT-- 75
Query: 116 VGGLSVLNAIAGAYS---ENLPLICIVG 140
G + + I G YS +++P++CI G
Sbjct: 76 -SGPAGTDMITGLYSASADSIPILCITG 102
Score = 36.9 bits (86), Expect = 0.034
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 426 CGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQ 466
CG Q G +GW++ A LG + P++ V+A GD FQ
Sbjct: 415 CG-----QAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQ 450
>gnl|CDD|132920 cd07037, TPP_PYR_MenD, Pyrimidine (PYR) binding domain of
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-
carboxylate synthase (MenD) and related proteins.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-
carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. Escherichia coli MenD (EcMenD)
is a homotetramer (dimer-of-homodimers), having two
active sites per homodimer lying between PYR and PP
domains of different subunits. EcMenD catalyzes a
Stetter-like conjugate addition of alpha-ketoglutarate
to isochorismate, leading to the formation of SEPHCHC
and carbon dioxide, this addition is the first committed
step in the biosynthesis of vitamin K2 (menaquinone).
Length = 162
Score = 40.2 bits (95), Expect = 7e-04
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 48 RHLARRLVQIGATDVFSVPGDFN--LTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSR 105
+ L L ++G DV PG + L L P L +E +A + A G A++
Sbjct: 1 QALVEELKRLGVRDVVISPGSRSAPLALA--AAEHPEFRLHVRVDERSAAFFALGLAKAS 58
Query: 106 GVGACVVTFTVGGLSVLN---AIAGAYSENLPLI 136
G VV T G +V N A+ AY +PL+
Sbjct: 59 GRPVAVVC-T-SGTAVANLLPAVVEAYYSGVPLL 90
>gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family,
Xsc-like subfamily, TPP-binding module; composed of
proteins similar to Alcaligenes defragrans
sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a
key role in the degradation of taurine, catalyzing the
desulfonation of 2-sulfoacetaldehyde into sulfite and
acetyl phosphate. This enzyme requires TPP and divalent
metal ions for activity.
Length = 196
Score = 36.3 bits (84), Expect = 0.019
Identities = 18/91 (19%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 399 MLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIA 458
++S++ I +S+ L+ K + + +G+ G+++ A +G + P++ V+A
Sbjct: 22 IVSTDIGNICSVANSY-----LRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVA 76
Query: 459 CIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
GDG++ ++ ++ T +R + N
Sbjct: 77 IAGDGAWGMSMMEIMTAVRHKLPVTAVVFRN 107
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 37.4 bits (87), Expect = 0.020
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINN 489
G++G+ + A +G + P++ V+A +GDG FQ+T Q++S + + ++NN
Sbjct: 424 GTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNN 478
Score = 36.3 bits (84), Expect = 0.043
Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 29/251 (11%)
Query: 62 VFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS 120
+F PG L L D L + G+ I +E A +AA+GYAR G G + T G +
Sbjct: 34 IFGYPGGAVLPLYDALY-DCGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGATN 92
Query: 121 VLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE---LRCFQTVTCYQA 177
V+ +A A ++LPL+ G ++ G+ D QE + VT +
Sbjct: 93 VVTGLADAMIDSLPLVVFTGQVATSVIGS-----------DAFQEADIMGITMPVTKHNY 141
Query: 178 VVNNLEDAHELIDTAVSTALK-ESKPVYISVACNLPAIPHPTFSRE---PVPFSLSPKLS 233
V D +I A A PV I + ++ + F + +P
Sbjct: 142 QVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM-VVEEGEFCYDVQMDLPGYQPNYEP 200
Query: 234 NEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGL- 292
N + + V+A + A KPV++AG + AKA A+ + V+ + GL
Sbjct: 201 NLLQIRKLVQAVS----VAKKPVILAGAGVLHAKASKELTSYAEQ--QEIPVVHTLLGLG 254
Query: 293 -VPEHHPHFIG 302
P HP F+G
Sbjct: 255 GFPADHPLFLG 265
>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 37.3 bits (87), Expect = 0.026
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 240 AAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPH 299
AV+ A + L KA +P+++ G A+A E + G M AKGL+P+ HP
Sbjct: 201 EAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQ 260
Score = 35.3 bits (82), Expect = 0.086
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 36 TPLVNPSESTLGRHL-ARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNA 94
T + + + T G HL L G ++ V G +T L L G+ IG +E +A
Sbjct: 1 TAMSDQLQLTDGFHLVIDALKLNGIDTIYGVVG-IPITDLARLAQAEGIRYIGFRHEQSA 59
Query: 95 GYAA--DGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVG 140
G AA G+ + G C+ G L+ L A+A A + P+I I G
Sbjct: 60 GNAAAAAGFLTQKP-GVCLTVSAPGFLNGLTALANATTNCFPMIMISG 106
>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional.
Length = 574
Score = 36.1 bits (84), Expect = 0.058
Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 32/247 (12%)
Query: 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYAR 103
T+ ++A+ L Q G ++ V GD L D L + + +E A +AA A+
Sbjct: 3 QTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQ 62
Query: 104 SRGVGA-CVVTFTVGGLSVLNAIAGAYSENLPLICIVGG-PNSNDYGTNRILHHTIGLPD 161
G A C + G L ++N + + ++P++ I P+S IG
Sbjct: 63 LTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSE-----------IGSGY 111
Query: 162 FS----QELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHP 217
F QEL F+ + Y +V+N E ++ A+ A+ + V + V +P
Sbjct: 112 FQETHPQEL--FRECSHYCELVSNPEQLPRVLAIAMRKAILN-RGVAVVV------LPGD 162
Query: 218 TFSRE----PVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFV 273
+ P E + A LN + L+ G A A + V
Sbjct: 163 VALKPAPERATPHWYHAPQPVVTPAEEELRKLAALLNGSSNITLLCGSG--CAGAHDELV 220
Query: 274 ELADACG 280
LA+
Sbjct: 221 ALAETLK 227
>gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional.
Length = 518
Score = 32.9 bits (75), Expect = 0.54
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 18/137 (13%)
Query: 374 PEGQPPKCEPKEP------LRVNVLFQHIQKMLSSETAVIAE---TGDSWFNCQKLKLPK 424
P + P P P L V L H + + A+ A+ T +F+ +
Sbjct: 325 PAARTPLALPALPKGALNSLGVAQLIAH----RTPDQAIYADEALTSGLFFDMS---YDR 377
Query: 425 GCGYEF-QMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTI 483
+ + GSIG + G A + P+++V+ GDG T Q + TM R
Sbjct: 378 ARPHTHLPLTGGSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVT 437
Query: 484 IFLINNGGY-TIEVEIH 499
+ + N Y + E+
Sbjct: 438 VVIFANRSYAILNGELQ 454
Score = 32.9 bits (75), Expect = 0.55
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGA 109
+ L+ G F+ PG + + L P + + C E AADGY R G A
Sbjct: 11 VVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPA 70
Query: 110 CVVTFTVGGLSVLNAIA---GAYSENLPLICIVG 140
VT G + N +A A P++ IVG
Sbjct: 71 --VTLLHLGPGLANGLANLHNARRAASPIVNIVG 102
>gnl|CDD|238966 cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TPP) family,
IOR-alpha subfamily, TPP-binding module; composed of
proteins similar to indolepyruvate ferredoxin
oxidoreductase (IOR) alpha subunit. IOR catalyzes the
oxidative decarboxylation of arylpyruvates, such as
indolepyruvate or phenylpyruvate, which are generated by
the transamination of aromatic amino acids, to the
corresponding aryl acetyl-CoA.
Length = 178
Score = 31.5 bits (72), Expect = 0.83
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 438 GWSVGATLGYAQSVPEKRVIACIGDGSF 465
G S+G +G A++ +K+V+A IGD +F
Sbjct: 54 GASIGVAIGMAKASEDKKVVAVIGDSTF 81
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 641
Score = 32.0 bits (73), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 436 SIGWSVGATLGYAQSVPEKRVIACIGDGS 464
SI ++G A P+ V+A IGDGS
Sbjct: 124 SISAALGFAKARALGQPDGDVVAVIGDGS 152
>gnl|CDD|237179 PRK12709, flgJ, flagellar rod assembly protein/muramidase FlgJ;
Provisional.
Length = 320
Score = 31.0 bits (70), Expect = 1.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 93 NAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYS 130
NAG AA + G + GGL+ +NA+A AY+
Sbjct: 103 NAGVAAGAQGDAGAGGMGGLGGNEGGLAAMNALAKAYA 140
>gnl|CDD|239162 cd02761, MopB_FmdB-FwdB, The MopB_FmdB-FwdB CD contains the
molybdenum/tungsten formylmethanofuran dehydrogenases,
subunit B (FmdB/FwdB), and other related proteins.
Formylmethanofuran dehydrogenase catalyzes the first
step in methane formation from CO2 in methanogenic
archaea and some eubacteria. Members of this CD belong
to the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 415
Score = 31.1 bits (71), Expect = 1.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 238 LEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280
LE A+E AAE L +A +P+ V +A A +ELA+ G
Sbjct: 56 LEEAIEKAAEILKEAKRPLFYGLGTT-VCEAQRAGIELAEKLG 97
>gnl|CDD|132340 TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This
family consists of examples of phosphonopyruvate an
decarboxylase enzyme that produces phosphonoacetaldehyde
(Pald), the second step in the biosynthesis
phosphonate-containing compounds. Since the preceding
enzymate step, PEP phosphomutase (AepX, TIGR02320)
favors the substrate PEP energetically, the
decarboxylase is required to drive the reaction in the
direction of phosphonate production. Pald is a precursor
of natural products including antibiotics like bialaphos
and phosphonothricin in Streptomyces species,
phosphonate-modified molecules such as the
polysaccharide B of Bacteroides fragilis, the
phosphonolipids of Tetrahymena pyroformis, the
glycosylinositolphospholipids of Trypanosoma cruzi. This
gene generally occurs in prokaryotic organisms adjacent
to the gene for AepX. Most often an aminotansferase
(aepZ) is also present which leads to the production of
the most common phosphonate compound,
2-aminoethylphosphonate (AEP).
Length = 361
Score = 30.8 bits (70), Expect = 1.9
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 21/185 (11%)
Query: 383 PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYE--FQMQYGSIGWS 440
P R + I L T +++ TG + +L+ G G+ F GS+G +
Sbjct: 169 PTLMTREEAI-AAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFLTV-GSMGHA 226
Query: 441 VGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTII-FLINNGGYTIEVEIH 499
LG A + P++RV+ GDG+ + ++T+ G +I L NNG H
Sbjct: 227 SQIALGLALARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNG-------AH 279
Query: 500 D---GPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEV 556
D G V ++ ++ + A G +V EEL A+ A+ + IEV
Sbjct: 280 DSVGGQPTVSQHLDFAQIAKAC----GYAKVYEVSTLEELETALTAAS--SANGPRLIEV 333
Query: 557 LVHKD 561
V
Sbjct: 334 KVRPG 338
>gnl|CDD|239468 cd03371, TPP_PpyrDC, Thiamine pyrophosphate (TPP) family, PpyrDC
subfamily, TPP-binding module; composed of proteins
similar to phosphonopyruvate decarboxylase (PpyrDC)
proteins. PpyrDC is a homotrimeric enzyme which
functions in the biosynthesis of C-P compounds such as
bialaphos tripeptide in Streptomyces hygroscopicus.
These proteins require TPP and divalent metal cation
cofactors.
Length = 188
Score = 30.4 bits (69), Expect = 2.0
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 425 GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACI-GDGSFQVTAQDVSTMLRCGQKTI 483
G +F GS+G + LG A + P+++V+ CI GDG+ + ++T+ +
Sbjct: 39 GHAQDFLTV-GSMGHASQIALGIALARPDRKVV-CIDGDGAALMHMGGLATIGGLAPANL 96
Query: 484 I-FLINNGGYTIEVEIHD---GPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEA 539
I ++NNG HD G V + + + A G + V EEL+ A
Sbjct: 97 IHIVLNNG-------AHDSVGGQPTVSFDVSLPAIAKA--CGYRAVYE--VPSLEELVAA 145
Query: 540 IENATGPKKDCLCFIEVLVHKDDTS 564
+ A D FIEV V S
Sbjct: 146 LAKA--LAADGPAFIEVKVRPGSRS 168
>gnl|CDD|205731 pfam13553, FIIND, Function to find. The function to find (FIIND)
was initially discovered in two proteins, NLRP1 (aka
NALP1, CARD7, NAC, DEFCAP) and CARD8 (aka TUCAN,
Cardinal). NLRP1 is a member of the Nod-like receptor
(NLR) protein superfamily and is involved in apoptosis
and inflammation. To date, it is the only NLR protein
known to have a FIIND domain. The FIIND domain is also
present in the CARD8 protein where, like in NLRP1, it is
followed by a C-terminal CARD domain. Both proteins are
described to form an "inflammasome", a macro-molecular
complex able to process caspase 1 and activate
pro-IL1beta. The FIIND domain is present in only a very
small subset of the kingdom of life, comprising
primates, rodents (mouse, rat), carnivores (dog) and a
few more, such as horse. The function of this domain is
yet to be determined. Publications describing the newly
discovered NLRP1 protein failed to identify it as a
separate domain; for example, it was taken as part of
the adjacent leucine rich repeat domain (LRR). Upon
discovery of CARD8 it was noted that the N-terminal
region shared significant sequence identity with an
undescribed region in NLRP1. Before getting its final
name, FIIND, this domain was termed NALP1-associated
domain (NAD).
Length = 255
Score = 29.4 bits (66), Expect = 4.4
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 296 HHPHFIGTYWGAVSTAFFSVGYSLLLKKEKAVILQPDRV----VIANGPAFGCVLMKDFL 351
H PHF+ G V T+ F V + K+E V+ P RV V+ P+F M L
Sbjct: 67 HLPHFVSLQAGHVDTSLFRVAH---FKEEGMVLEAPARVEPFYVVLENPSFS--PMGVLL 121
Query: 352 KALSKRLKSN--TTAYENYHRIYVPE 375
+ +S + T+A Y+ I+ +
Sbjct: 122 RIISAVRRFIPITSATLIYYHIHPED 147
>gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units).
Length = 332
Score = 29.5 bits (66), Expect = 5.1
Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 49 HLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLI---GCCNELNAGYAADGYARSR 105
LA VQ G D+ G L + L +A AADG+
Sbjct: 104 SLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALSTPEKASRTFDA--AADGFVFGD 161
Query: 106 GVGACVV 112
G GA VV
Sbjct: 162 GAGALVV 168
>gnl|CDD|237886 PRK15042, pduD, propanediol dehydratase medium subunit;
Provisional.
Length = 219
Score = 28.9 bits (65), Expect = 5.8
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 330 QPDRVVIANGPAFG 343
Q D VVIA GPAFG
Sbjct: 54 QQDEVVIAVGPAFG 67
>gnl|CDD|224087 COG1165, MenD,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase [Coenzyme metabolism].
Length = 566
Score = 29.2 bits (66), Expect = 6.7
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 448 AQSVPEKRVIACIGDGSFQVTAQDVSTML---RCGQKTIIFLINNGG 491
+K +A IGD SF D++ +L + Q I ++NN G
Sbjct: 434 IARATQKPTVALIGDLSF---LHDLNGLLLLKKVPQPLTIVVVNNNG 477
>gnl|CDD|180263 PRK05799, PRK05799, coproporphyrinogen III oxidase; Provisional.
Length = 374
Score = 28.8 bits (65), Expect = 8.6
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 346 LMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETA 405
LM +++KALSK ++++T I++ G P + + +L + I+K+ E
Sbjct: 31 LMMEYIKALSKEIRNSTKNK-KIKSIFIGGGTPTYLSLEA---LEILKETIKKLNKKEDL 86
Query: 406 VIA-ETGDSWFNCQKLKLPK 424
E F +KLK+ K
Sbjct: 87 EFTVEGNPGTFTEEKLKILK 106
>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 314
Score = 28.8 bits (64), Expect = 8.9
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 46 LGRHLARRLVQIG----ATDVFSVPGDFNLTLLDHLIA 79
+G HL RL+ G D D L+ ++ ++
Sbjct: 12 IGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVL 49
>gnl|CDD|238967 cd02009, TPP_SHCHC_synthase, Thiamine pyrophosphate (TPP) family,
SHCHC synthase subfamily, TPP-binding module; composed
of proteins similar to Escherichia coli
2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic
acid (SHCHC) synthase (also called MenD). SHCHC synthase
plays a key role in the menaquinone biosynthetic
pathway, converting isochorismate and 2-oxoglutarate to
SHCHC, pyruvate and carbon dioxide. The enzyme requires
TPP and a divalent metal cation for activity.
Length = 175
Score = 27.9 bits (63), Expect = 9.2
Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 24/120 (20%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTML---RCGQKTIIFLINNGG 491
G++ ++G L + + GD SF D++ +L + I +INN G
Sbjct: 55 GTLSTALGIALATDK-----PTVLLTGDLSFL---HDLNGLLLGKQEPLNLTIVVINNNG 106
Query: 492 YTI----EVEIHDGPYNVI----KNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENA 543
I + + + + ++ L A + E + ++ +EL +A+E+A
Sbjct: 107 GGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKA-YGLEYRRVSSL----DELEQALESA 161
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.414
Gapped
Lambda K H
0.267 0.0940 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,443,354
Number of extensions: 2888007
Number of successful extensions: 3087
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2995
Number of HSP's successfully gapped: 156
Length of query: 585
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 483
Effective length of database: 6,413,494
Effective search space: 3097717602
Effective search space used: 3097717602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.3 bits)