RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 044559
(585 letters)
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 746 bits (1928), Expect = 0.0
Identities = 229/562 (40%), Positives = 320/562 (56%), Gaps = 28/562 (4%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+G +LA RLVQIG F+V GD+NL LLD L+ + I CCNELN G++A+GYARS
Sbjct: 4 TVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARS 63
Query: 105 RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ 164
G A VVTF+VG +S +NA+ GAY+ENLP+I I G PNSND GT ILHHTIG D+S
Sbjct: 64 NGAAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSY 123
Query: 165 ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPV 224
+L + VTC + + A ID + TAL+E KP Y+ +ACN+ + P PV
Sbjct: 124 QLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNIAS--EPCVRPGPV 181
Query: 225 PFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVA 284
LS + L+AAV+A L K+ PV++ G K+R A A A LAD AV
Sbjct: 182 SSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVT 241
Query: 285 VMPSAKGLVPEHHPHFIGTYWGAVST-----------------AFFS----VGYSLLLKK 323
+M +AKG PE H F G YWG VS F+ VG+S K
Sbjct: 242 IMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKG 301
Query: 324 EKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEP 383
++ +PDRV + +G A+ ++ FL+AL+++ + + + + VP
Sbjct: 302 PNVILAEPDRVTV-DGRAYDGFTLRAFLQALAEKAPARPASAQ---KSSVPTCSLTATSD 357
Query: 384 KEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGA 443
+ L + + +HI +L+S T ++AETGDSWFN ++ LP+G E +MQ+G IGWSV +
Sbjct: 358 EAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPRGARVELEMQWGHIGWSVPS 417
Query: 444 TLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPY 503
G A +++ + +GDGSFQ+TAQ+V+ M+R IIFLINN GY IE+ IHDGPY
Sbjct: 418 AFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPY 477
Query: 504 NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDT 563
N IKNW+Y GL++ + GEG K +EL EAI A IE + + D
Sbjct: 478 NYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKA-NTRGPTLIECQIDRTDC 536
Query: 564 SKELLEWGSRVSAANSRPPNPQ 585
+ L++WG +V++ N+R
Sbjct: 537 TDMLVQWGRKVASTNARKTTLA 558
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 743 bits (1922), Expect = 0.0
Identities = 237/567 (41%), Positives = 335/567 (59%), Gaps = 30/567 (5%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+G +LA RLVQIG F+V GD+NL LLD+L+ + + CCNELN G++A+GYAR+
Sbjct: 4 TVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARA 63
Query: 105 RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ 164
+G A VVT++VG LS +AI GAY+ENLP+I I G PN+ND+ +LHH +G D+
Sbjct: 64 KGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
Query: 165 ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPV 224
+L + +T + E+A ID + TAL+E KPVY+ +ACN+ ++P + P
Sbjct: 124 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCA--APGPA 181
Query: 225 PFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVA 284
+ + S+E L AAVE +F+ K ++ G K+R A A A V+ ADA G AVA
Sbjct: 182 SALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVA 241
Query: 285 VMPSAKGLVPEHHPHFIGTYWGAVST-----------------AFFS----VGYSLLLKK 323
M +AK PE +PH+IGT WG VS F+ G++ +
Sbjct: 242 TMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDP 301
Query: 324 EKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPP-KCE 382
+K V+ +P VV+ NG F V +KD+L L++++ T A + + + E + +
Sbjct: 302 KKLVLAEPRSVVV-NGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPAD 360
Query: 383 PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVG 442
P PL + + ++ +L+ T VIAETGDSWFN Q++KLP G E++MQ+G IGWSV
Sbjct: 361 PSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVP 420
Query: 443 ATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGP 502
A GYA PE+R I +GDGSFQ+TAQ+V+ M+R IIFLINN GYTIEV IHDGP
Sbjct: 421 AAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGP 480
Query: 503 YNVIKNWNYTGLVDAIHNG----EGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLV 558
YN IKNW+Y GL++ + G K EL EAI+ A D IE +
Sbjct: 481 YNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALA-NTDGPTLIECFI 539
Query: 559 HKDDTSKELLEWGSRVSAANSRPPNPQ 585
++D ++EL++WG RV+AANSR P +
Sbjct: 540 GREDCTEELVKWGKRVAAANSRKPVNK 566
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 690 bits (1782), Expect = 0.0
Identities = 178/568 (31%), Positives = 267/568 (47%), Gaps = 36/568 (6%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
SE TLG++L RL Q+ VF +PGDFNL+LLD + G+ G NELNA YAADGY
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGY 61
Query: 102 ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
AR +G+ + TF VG LS LN IAG+Y+E++ ++ +VG P+ + +LHHT+G D
Sbjct: 62 ARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGD 121
Query: 162 FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSR 221
F+ R ++ A++ ++ A ID + T +PVY+ + NL + P
Sbjct: 122 FTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVP-AKL 180
Query: 222 EPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGY 281
P +S K ++ + ++ A PV++A +L D +
Sbjct: 181 LQTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQF 240
Query: 282 AVAVMPSAKGLVPEHHPHFIGTYWGAVST-----------------AFFS----VGYSLL 320
V P KG + E HP + G Y G +S A S +S
Sbjct: 241 PAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYS 300
Query: 321 LKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPK 380
K + V D + I N F V MK L+ L + A + Y + VP P
Sbjct: 301 YKTKNIVEFHSDHMKIRNA-TFPGVQMKFVLQKLLTTIA---DAAKGYKPVAVPARTPAN 356
Query: 381 CE--PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIG 438
PL+ ++ + L VIAETG S F + P Q+ +GSIG
Sbjct: 357 AAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIG 416
Query: 439 WSVGATLGYA----QSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI 494
++ GATLG A + P+KRVI IGDGS Q+T Q++STM+R G K +F++NN GYTI
Sbjct: 417 FTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTI 476
Query: 495 EVEIH--DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLC 552
+ IH YN I+ W++ L+ G T +V E + ++ + +
Sbjct: 477 QKLIHGPKAQYNEIQGWDHLSLLPTF--GAKDYETHRVATTGEWDKLTQDKSFNDNSKIR 534
Query: 553 FIEVLVHKDDTSKELLEWGSRVSAANSR 580
IEV++ D + L+E +A N++
Sbjct: 535 MIEVMLPVFDAPQNLVEQAKLTAATNAK 562
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 672 bits (1737), Expect = 0.0
Identities = 165/563 (29%), Positives = 264/563 (46%), Gaps = 37/563 (6%)
Query: 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADG 100
+ + +L RL GA +F VPGD+NL LDH+I P + +GC NELNA YAADG
Sbjct: 2 RTPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADG 61
Query: 101 YARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160
YAR +G A + TF VG LS +N IAG+Y+E++P++ IVG P + +LHHT+G
Sbjct: 62 YARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDG 121
Query: 161 DFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFS 220
+F + +T QAV+ +E ID ++T L+E +P Y+ + ++ +
Sbjct: 122 EFRHFYHMSEPITVAQAVLTEQNACYE-IDRVLTTMLRERRPGYLMLPADVAKKA---AT 177
Query: 221 REPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280
+ ++ L+A +AA L + + L+A + +A +
Sbjct: 178 PPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVP 237
Query: 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVST-----------------AFFS----VGYSL 319
A A M KG+ E F GTY G+ ST F+ G++
Sbjct: 238 MAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTH 297
Query: 320 LLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPP 379
L + + +QP + F + M ++ L + K + A + G P
Sbjct: 298 QLTPAQTIEVQPHAARV-GDVWFTGIPMNQAIETLVELCKQHVHA----GLMSSSSGAIP 352
Query: 380 KCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGW 439
+P L ++ +Q + ++A+ G S F L+LP + Q +GSIG+
Sbjct: 353 FPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGY 412
Query: 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH 499
++ A G + P +RVI GDG+ Q+T Q++ +MLR Q II ++NN GYT+E IH
Sbjct: 413 TLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIH 472
Query: 500 DGP--YNVIKNWNYTGLVDAIH-NGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEV 556
YN I WN+T + A+ + + +CW +V E+L + +E + L IEV
Sbjct: 473 GAEQRYNDIALWNWTHIPQALSLDPQSECW--RVSEAEQLADVLEKVA--HHERLSLIEV 528
Query: 557 LVHKDDTSKELLEWGSRVSAANS 579
++ K D L + A N+
Sbjct: 529 MLPKADIPPLLGALTKALEACNN 551
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 663 bits (1713), Expect = 0.0
Identities = 164/561 (29%), Positives = 257/561 (45%), Gaps = 36/561 (6%)
Query: 41 PSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADG 100
S T+G +L RL ++G ++F VPGD+NL LD +I+ + IG NELNA Y ADG
Sbjct: 22 ASMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADG 81
Query: 101 YARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160
YAR++ A + TF VG LS +N +AG+Y+ENLP++ IVG P S + +HHT+
Sbjct: 82 YARTKKAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADG 141
Query: 161 DFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFS 220
DF ++ + VT + ++ E+A ID +S LKE KPVYI NLP +
Sbjct: 142 DFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKERKPVYI----NLPVDVAAAKA 196
Query: 221 REPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACG 280
+P + + + E L A KPV++AG ++ +
Sbjct: 197 EKPALSLEKESSTTNTTEQVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETK 256
Query: 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVST-----------------AFFS----VGYSL 319
+ + K V E P F+G Y G +S + ++
Sbjct: 257 LPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTH 316
Query: 320 LLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPP 379
L + K + L D +I N + + +LS+ Y Y+ +
Sbjct: 317 HLDENKMISLNIDEGIIFNK-VVEDFDFRAVVSSLSELKGI------EYEGQYIDKQYEE 369
Query: 380 KCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGW 439
PL + L+Q ++ + S ++AE G S+F + L + Q +GSIG+
Sbjct: 370 FIPSSAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGASTIFLKSNSRFIGQPLWGSIGY 429
Query: 440 SVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH 499
+ A LG + E R + IGDGS Q+T Q++ +R I F+INN GYT+E EIH
Sbjct: 430 TFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIH 489
Query: 500 DG--PYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVL 557
YN I WNY+ L + E + + V E E + ++ A + + +IE++
Sbjct: 490 GPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQA-DVNRMYWIELV 548
Query: 558 VHKDDTSKELLEWGSRVSAAN 578
+ K+D K L + G + N
Sbjct: 549 LEKEDAPKLLKKMGKLFAEQN 569
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 455 bits (1173), Expect = e-155
Identities = 124/583 (21%), Positives = 210/583 (36%), Gaps = 45/583 (7%)
Query: 24 GAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGL 83
G+ S L L R L GA +F +PGDF L L
Sbjct: 2 GSSHHHHHHSSGLV-PRGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQIL 60
Query: 84 NLIGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGP 142
L +E G+AAD AR +G VT+ G +++NA+AGAY+E P++ I G P
Sbjct: 61 PLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAP 120
Query: 143 NSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKP 202
+ + +LHH D + F+ +T QA +++ A I + A +S+P
Sbjct: 121 GTTEGNAGLLLHHQGRTLDTQ--FQVFKEITVAQARLDDPAKAPAEIARVLGAARAQSRP 178
Query: 203 VYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPK 262
VY+ + N+ +P + L A + + A PVL+ +
Sbjct: 179 VYLEIPRNMVNAEVEPVGDDP------AWPVDRDALAACADEVLAAMRSATSPVLMVCVE 232
Query: 263 MRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAF---------- 312
+R ELA G V +GL+ + +GTY G A
Sbjct: 233 VRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDG 292
Query: 313 -FSVG----------YSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSN 361
F +G + K + V + + + + + AL +RL +
Sbjct: 293 LFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTL-GYHTYADIPLAGLVDALLERLPPS 351
Query: 362 TTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLK 421
P G EP P+ + + + A+ GD F +
Sbjct: 352 DRTTRGKEPHAYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTAMDM- 410
Query: 422 LPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQK 481
G Y +G+ V A +G KR++ +GDG+FQ+T ++ R G
Sbjct: 411 --IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGID 468
Query: 482 TIIFLINNGGYTIEVEIH-DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAI 540
I+ L NN + + + +N + +W + + + +V EL A+
Sbjct: 469 PIVILFNNASWEMLRTFQPESAFNDLDDWRFADMAAGMG-----GDGVRVRTRAELKAAL 523
Query: 541 ENATGPKKDCLCFIEVLVHKDDTS---KELLEWGSRVSAANSR 580
+ A + IE ++ + S ++ R+ AA
Sbjct: 524 DKAFA-TRGRFQLIEAMIPRGVLSDTLARFVQGQKRLHAAPRE 565
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 131 bits (332), Expect = 8e-33
Identities = 87/493 (17%), Positives = 160/493 (32%), Gaps = 82/493 (16%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+ ++A+ L G ++ V GD L D L + + +E A +AA A+
Sbjct: 4 TVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQL 63
Query: 105 RG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFS 163
G + C + G L ++N + + ++P++ I I IG +
Sbjct: 64 SGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAA----------HIPSSEIGS-GYF 112
Query: 164 QE---LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPA-IPHPTF 219
QE F+ + Y +V++ E +++ A+ A+ + LP +
Sbjct: 113 QETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVV----LPGDVALKPA 168
Query: 220 SREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
E + A+ L + L+ G A A VE A
Sbjct: 169 PEGATMHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCG--SGCAGAHKELVEFAGKI 226
Query: 280 GYAVAVMPSAKGLVPEHHPHF------IGTY--WGAVSTA--FFSVG----YSLLLKKEK 325
+ K V +P+ IG + + A +G Y
Sbjct: 227 KAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFYPT-D 285
Query: 326 AVILQPD-------RVVIANGPAFGCVLMKDFLKALSKRLKSNT-------------TAY 365
A I+Q D + G + K L+AL ++ A
Sbjct: 286 AKIIQIDINPASIGAHSKVDMALVGDI--KSTLRALLPLVEEKADRKFLDKALEDYRDAR 343
Query: 366 ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDS--WFNCQKLKLP 423
+ + P + P + Q I + + + G W + LK
Sbjct: 344 KGLDDLAKPSEKAIH-----PQYL---AQQISHFAADDAIFTCDVGTPTVWA-ARYLK-- 392
Query: 424 KGCGYEFQMQY------GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLR 477
+ + GS+ ++ LG + PE++V+A GDG F + D ++++
Sbjct: 393 ----MNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQ 448
Query: 478 CGQKTIIFLINNG 490
I + NN
Sbjct: 449 MKLPVKIVVFNNS 461
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 130 bits (330), Expect = 2e-32
Identities = 92/589 (15%), Positives = 194/589 (32%), Gaps = 111/589 (18%)
Query: 39 VNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHL-IAEPGLNLIGCCNELNAGYA 97
+ G + + L G ++ +PG +++D L ++ I +E A
Sbjct: 6 TKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMA 65
Query: 98 ADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHT 156
A A+ G +G C + GG ++N + A +++P++ ++G +
Sbjct: 66 AAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIG----------QFGTTG 115
Query: 157 IGLPDFSQE---LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPA 213
+ + D QE + V Y N +ID A+ A + + +LP
Sbjct: 116 MNM-DTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPW 174
Query: 214 IPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFV 273
P S L E AV + L A +P++ G KA
Sbjct: 175 QQIPAEDWYASANSYQTPLLPE-PDVQAVTRLTQTLLAAERPLIYYGIG--ARKAGKELE 231
Query: 274 ELADACGYAVA--VMPSAKGLVPEHHPHF------IGTYWG--AVSTA--FFSVG----Y 317
+L+ + AKG+V + +P + + A++ A VG +
Sbjct: 232 QLSKTLKIPLMSTYP--AKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPF 289
Query: 318 SLLLKK--EKAVILQPD-------RVVIANGPAFGCVLMKDFLKALSKRLKSNT------ 362
+ + K LQ D + + + L A+ ++
Sbjct: 290 AEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADA--QKTLAAILAQVSERESTPWWQ 347
Query: 363 TAYENYH--RIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKL 420
N R Y+ + + + PL+ + + + K+ + + GD
Sbjct: 348 ANLANVKNWRAYLASLEDKQ---EGPLQAYQVLRAVNKIAEPDAIYSIDVGDI------- 397
Query: 421 KLPKGCGYEFQM---QY---------------GSIGWSVGATLGYAQSVPEKRVIACIGD 462
+ ++ ++G + + + PE++V GD
Sbjct: 398 ----------NLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGD 447
Query: 463 GSFQVTAQDVSTMLRCGQKTIIFLINNG--GYTIEVE-----IHDGPYN--VIKNWNYTG 513
G +T QD++T ++ I + N G+ ++ + + + +++
Sbjct: 448 GGASMTMQDLATQVQYHLPVINVVFTNCQYGF---IKDEQEDTNQNDFIGVEFNDIDFSK 504
Query: 514 LVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDD 562
+ D +H +V E+L + E A + I+ ++ D
Sbjct: 505 IADGVH-----MQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDR 548
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate
synthase; transferase, metal-binding; HET: TPP; 2.35A
{Bacillus subtilis}
Length = 604
Score = 124 bits (314), Expect = 2e-30
Identities = 90/613 (14%), Positives = 176/613 (28%), Gaps = 78/613 (12%)
Query: 23 NGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPG 82
+ + VNP + G TD PG + L A P
Sbjct: 11 SSGENLYFQGHMLEMTVNPI-THYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPD 69
Query: 83 LNLIGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLN---AIAGAYSENLPLICI 138
+++ +E +AG+ A G A+++ + T G + N A+ A+ +P+I +
Sbjct: 70 ISVHVQIDERSAGFFALGLAKAKQRPVLLICT---SGTAAANFYPAVVEAHYSRVPIIVL 126
Query: 139 VG--GPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTA 196
+ G + ++ L F ++ F + L L A A
Sbjct: 127 TADRPHELREVGAPQAINQH-FL--FGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEA 183
Query: 197 LKESK-PVYISVACNLPAIPHPT---FSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKA 252
K PV+++V P +P + F R +S K + ++ AE L +A
Sbjct: 184 QKRPMGPVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVKTGTQSVDRESLSDVAEMLAEA 243
Query: 253 VKPVLVAGPKMRVAKACNAFVELADACGYAVAVMP-SAKGLVPEHHPHFIGTYWGAVS-- 309
K ++V G + + L+ A Y + P S I Y +
Sbjct: 244 EKGMIVCGE-LHSDADKENIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDD 302
Query: 310 --------TAFFSVGYSLLLKKEKAVILQPD---RVVIANGPA----FGCV------LMK 348
G + K + ++VI
Sbjct: 303 ELKRKLRPDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNAS 362
Query: 349 DFLKALSKRLKSNT---------TAYENYHRIYVPE--GQPPKCEPKEPLRVNVLFQHIQ 397
F + + L + T R ++ + E L++ +Q
Sbjct: 363 VFAEEIMAGLTAATRSSEWLEKWQFVNGRFREHLQTISSEDVSFEGN-------LYRILQ 415
Query: 398 KMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGS--IGWSVGATLGYAQSVPEKR 455
++ +++ + + + G+ I V + +G +
Sbjct: 416 HLVPENSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVC-EGTKAP 474
Query: 456 VIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI----EVEIHDGPYNVI----K 507
V IGD SF + + G + L+NN G I + +
Sbjct: 475 VTLVIGDLSFYHDLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPT 534
Query: 508 NWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKEL 567
++ + G C + +E A L IE+ + +
Sbjct: 535 GLDFKHAAAL-YGGTYSCPASW----DEFKTAYAPQADKPGLHL--IEIKTDRQSRVQLH 587
Query: 568 LEWGSRVSAANSR 580
+ + +
Sbjct: 588 RDMLNEAVREVKK 600
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 123 bits (310), Expect = 7e-30
Identities = 93/581 (16%), Positives = 185/581 (31%), Gaps = 107/581 (18%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPG-LNLIGCCNELNAGYAADGYAR 103
+G + + L GA ++ +P +L+D + E + + +E AA ++
Sbjct: 5 NIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSK 64
Query: 104 SRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162
G +G V + G ++N + A +N+P++ I+G + + D
Sbjct: 65 FGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILG----------SRPQRELNM-DA 113
Query: 163 SQEL---RCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTF 219
QEL + + Y V E +L+D A A+ + + V + +
Sbjct: 114 FQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLEVPGDFAKVEIDND 173
Query: 220 SREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
SL K + ++AA E LN + +PV+ AG A ELA
Sbjct: 174 QWYSSANSL-RKYAPIAPAAQDIDAAVELLNNSKRPVIYAGIG--TMGHGPAVQELARKI 230
Query: 280 GYAV--AVMPSAKGLVPEHHPHF------IGTYWG--AVSTA--FFSVG----YSLLLKK 323
V +G + A G +S +
Sbjct: 231 KAPVITTGK--NFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGT 288
Query: 324 --EKAVILQPD-------RVVIANGPAFGCVLMKDFLKALSKRL--KSNTTAYENYH--- 369
+Q D + A+ G + + ++ + +
Sbjct: 289 FRNVDNFIQIDIDPAMLGKRHHADVAILGDA--ALAIDEILNKVDAVEESAWWTANLKNI 346
Query: 370 ---RIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGC 426
R Y+ + + + +V + I + + G+S
Sbjct: 347 ANWREYINMLETKEEGDLQFYQV---YNAINNHADEDAIYSIDVGNS------------- 390
Query: 427 GYEFQM---QY---------------GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVT 468
++ ++G ++ LG + P+++V IGDG+F +T
Sbjct: 391 ----TQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMT 446
Query: 469 AQDVSTMLRCGQKTIIFLINNGGY-TIEVE---IHDGPYNV-IKNWNYTGLVDAI-HNGE 522
DV T +R I + +N Y I+ + + + V + +Y + +A G
Sbjct: 447 YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKG- 505
Query: 523 GKCWTTKVFCEEELIEAIENATGPKK-DCLCFIEVLVHKDD 562
V E++ + A K I+ + +D
Sbjct: 506 -----FTVSRIEDMDRVMAEAVAANKAGHTVVIDCKITQDR 541
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate
synthase; menaquinone biosynthesis, sephchc synthase,
structural genomics; 2.60A {Listeria monocytogenes}
Length = 578
Score = 116 bits (292), Expect = 1e-27
Identities = 88/597 (14%), Positives = 176/597 (29%), Gaps = 101/597 (16%)
Query: 48 RHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG- 106
LVQ G + PG + L + P L + +E +AG+ A G A++
Sbjct: 15 AAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKR 74
Query: 107 VGACVVTFTVGGLSVLN---AIAGAYSENLPLICIVG--GPNSNDYGTNRILHHTIGLPD 161
+ T G + N A+A A +PLI + + G
Sbjct: 75 PVVLLCT---SGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAP----------- 120
Query: 162 FSQELR---CFQTVTCYQA---VVNNLEDAHELIDTAVSTALKESK-----PVYISVACN 210
Q + + + + N E+ S A+ + PV+++
Sbjct: 121 --QAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178
Query: 211 LPAIP----HPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVA 266
P +P P + + ++E+ +++++ K V V GP +
Sbjct: 179 EPLVPILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTGK-KGVFVVGP-IDKK 236
Query: 267 KACNAFVELADACGYAVAVMP-SAKGLVPEHHPHFIGTY--WGAVSTAF--------FSV 315
+ V+LA G+ + P S I Y + +
Sbjct: 237 ELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRF 296
Query: 316 GYSLLLKKEKAVILQPDRVVIANGPAFGCVL-------------MKDFLKALSKRLKSNT 362
G + K K + Q + + L + + + +
Sbjct: 297 GSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDA 356
Query: 363 --TAYENYHRIY---VPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDS---- 413
A+ N Y E + L + ++++L + + G+S
Sbjct: 357 KDAAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVAELRRLLPDKAGLF--IGNSMPIR 414
Query: 414 WFNCQKLKLPKGCGYEFQMQYGS-----IGWSVGATLGYAQSVPEKRVIACIGDGSFQVT 468
+ ++ K + I V + LG + V + + IGD SF
Sbjct: 415 DVDTYFSQIDKKI-----KMLANRGANGIDGVVSSALGAS--VVFQPMFLLIGDLSFYHD 467
Query: 469 AQDVSTMLRCGQKTIIFLINNGGYTI----EVEIHDGPYNVI----KNWNYTGLVDAIHN 520
+ + I ++NN G I + + ++ ++
Sbjct: 468 MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDFRFAAAF-YD 526
Query: 521 GEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAA 577
+ + +EL EAI+ A+ K + IEV ++ +
Sbjct: 527 ADYHEAKSV----DELEEAIDKASYHKGLDI--IEVKTNRHENKANHQALEGHHHHH 577
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 108 bits (271), Expect = 6e-25
Identities = 105/582 (18%), Positives = 180/582 (30%), Gaps = 110/582 (18%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VG 108
+ L Q ++ V G + H AE G+ IG +E +AGYAA G
Sbjct: 14 IVEALKQNNIDTIYGVVGIPVTDMARHAQAE-GIRYIGFRHEQSAGYAAAASGFLTQKPG 72
Query: 109 ACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP--DFSQEL 166
C+ G L+ L A+A A P+I I G + + L D+ +E
Sbjct: 73 ICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDR----------AIVDLQQGDY-EE- 120
Query: 167 RCFQT-----VTCYQAVVNNLEDAHELIDTAVSTALKESK---PVYISVACNLPAIPHPT 218
Q VN +D + A+ + S VY+ + N+ A
Sbjct: 121 -LDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVS--VSGRPGGVYLDLPANVLAATMEK 177
Query: 219 FSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADA 278
+ + +V +A L KA +P+++ G ++A E ++
Sbjct: 178 DEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIES 237
Query: 279 CGYAVAVMPSAKGLVPEHHP-HFIGTYWG--AVSTA--FFSVGYSL------LLKK--EK 325
M AKG++ + HP A++ A VG L K
Sbjct: 238 AQIPFLPMSMAKGILEDTHPLS--AAAARSFALANADVVMLVGARLNWLLAHGKKGWAAD 295
Query: 326 AVILQPD-------RVVIANGPAFGCVLMKDFLKALSKRLKSNTTAY--------ENYHR 370
+Q D P G + ++ + LK NT + +
Sbjct: 296 TQFIQLDIEPQEIDSNRPIAVPVVGDI--ASSMQGMLAELKQNTFTTPLVWRDILNIHKQ 353
Query: 371 IYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDS----WFNCQ--KLKLPK 424
+ +PL ++ +L + + + P+
Sbjct: 354 QNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYL-VNEGANTLDNARNIIDMYKPR 412
Query: 425 ------GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRC 478
G M G +G +G A V+A GD +F + ++ T+ R
Sbjct: 413 RRLDCGTWG---VMGIG-----MGYAIG-ASVTSGSPVVAIEGDSAFGFSGMEIETICRY 463
Query: 479 GQKTIIFLINNGG--------------YTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGK 524
I + NNGG + ++ Y L+DA G G
Sbjct: 464 NLPVTIVIFNNGGIYRGDGVDLSGAGAPS-PTDLLHHA-------RYDKLMDA-FRGVGY 514
Query: 525 CWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKE 566
TT +EL A+ + I V++ ++
Sbjct: 515 NVTTT----DELRHALTTGI--QSRKPTIINVVIDPAAGTES 550
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 102 bits (256), Expect = 4e-23
Identities = 87/495 (17%), Positives = 151/495 (30%), Gaps = 100/495 (20%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VG 108
L + G VF PG L L + I E ADGYA++
Sbjct: 8 TYELLRRQGIDTVFGNPGSNALPFLKDFPED--FRYILALQEACVVGIADGYAQASRKPA 65
Query: 109 ACVVTF------TVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162
+ +G ++ A++ + PLI G IG+
Sbjct: 66 FINLHSAAGTGNAMGA------LSNAWNSHSPLIVTAGQQTR----------AMIGVEAL 109
Query: 163 SQELRCFQT---VTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISV-----ACNLPA 213
+ + + + + + A+ A + PVY+SV +
Sbjct: 110 LTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADP 169
Query: 214 IPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFV 273
H F R + + ++ + LN A P +V GP + A A V
Sbjct: 170 QSHHLFDRHVSS--------SVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCV 221
Query: 274 ELADACGYAVAVMPS-AKGLVPEHHPHFIG-----TYWG--AVSTA--FFSVGYSLL--- 320
LA+ V V PS + P HP F G + +G +
Sbjct: 222 MLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYH 281
Query: 321 ------LKKEKAVILQPD-------RVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYEN 367
K ++ R + + + AL+ ++ E+
Sbjct: 282 QYDPGQYLKPGTRLISVTCDPLEAARAPMGD-AIVADI--GAMASALANLVE------ES 332
Query: 368 YHRIYVPEGQPPK-CEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSW---FNCQKLKLP 423
++ +P K + L +F + M + E+ + + ++ P
Sbjct: 333 SRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNP 392
Query: 424 KGCGYEFQMQYGSIGWSVGATLGY-------AQ-SVPEKRVIACIGDGSFQVTAQDVSTM 475
Y LG+ Q + PE++VIA IGDGS + + T
Sbjct: 393 G--------SYYFCA---AGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTA 441
Query: 476 LRCGQKTIIFLINNG 490
+ TI ++NNG
Sbjct: 442 AQYNIPTIFVIMNNG 456
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 99 bits (250), Expect = 2e-22
Identities = 89/503 (17%), Positives = 171/503 (33%), Gaps = 102/503 (20%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VG 108
+ +L G VF +PG + D L+ + + +I +E NA + A R G G
Sbjct: 17 VVSQLEAQGVRQVFGIPGAKIDKVFDSLL-DSSIRIIPVRHEANAAFMAAAVGRITGKAG 75
Query: 109 ACVVT----FTVGGLSVLNA---IAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
+VT + N +A A SE P++ + G D
Sbjct: 76 VALVTSGPGCS-------NLITGMATANSEGDPVVALGGAVKRADKAK-----------Q 117
Query: 162 FSQE---LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISVACNLPAIPHP 217
Q + F VT Y V + E++ A A + ++S+ + +
Sbjct: 118 VHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD---VVDG 174
Query: 218 TFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELAD 277
S + +P S +P++ + A++ A+ + +A P+ + G + A L +
Sbjct: 175 PVSGKVLPASGAPQMGA--APDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLE 232
Query: 278 ACGYAVA--VMPSAKGLVPE-HHPHFIG------TYWG--AVSTA--FFSVGYSL----- 319
V A G V + + F G G + A +GYS
Sbjct: 233 TSHIPVTSTYQ--AAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEP 290
Query: 320 -LLKKEKAVILQPD-------RVVIANGPAFGCVLMKDFLKALSKRLKSNTTAY------ 365
+ A ++ D R + G + L L++ +
Sbjct: 291 AMWNSGNATLVHIDVLPAYEERNYTPDVELVGDI--AGTLNKLAQNIDHRLVLSPQAAEI 348
Query: 366 ----ENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDS--W----F 415
++ + G PLR+ + +Q +++S+ + + G W
Sbjct: 349 LRDRQHQRELLDRRGAQLNQFALHPLRI---VRAMQDIVNSDVTLTVDMGSFHIWIARYL 405
Query: 416 NCQKLKLPK------GCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTA 469
+ + G M + W++GA L PE++V++ GDG F ++
Sbjct: 406 YTFR---ARQVMISNGQQ---TMGVA-LPWAIGAWLVN----PERKVVSVSGDGGFLQSS 454
Query: 470 QDVSTMLRCGQKTIIFLINNGGY 492
++ T +R + + + GY
Sbjct: 455 MELETAVRLKANVLHLIWVDNGY 477
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 99.5 bits (248), Expect = 4e-22
Identities = 88/593 (14%), Positives = 162/593 (27%), Gaps = 107/593 (18%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
+ L + G + PG + L +E G+ A G A+
Sbjct: 9 RWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKV 68
Query: 105 RG-VGACVVTFTVGGLSVLN---AIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160
A +VT G +V N A+ A LI + +R I
Sbjct: 69 SKQPVAVIVT---SGTAVANLYPALIEAGLTGEKLILLTA---------DR-PPELIDCG 115
Query: 161 DFSQELR---CFQTVTCYQA---VVNNLEDAHELIDTAVSTALK-ESKPVYISVACNLPA 213
Q +R F + + A L+ T + V+I+ P
Sbjct: 116 AN-QAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPL 174
Query: 214 IPHPTFSREPVPFSLSPKLSN------EMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAK 267
+ L + E + + F + + V+VAG A+
Sbjct: 175 YGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMS--AE 232
Query: 268 ACNAFVELADACGYAV-AVMPSAKGLVPEHHPHFIGTY----WGAVSTAFFSVGYSLLLK 322
A G+ + + S G ++G + +G SL K
Sbjct: 233 EGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGK 292
Query: 323 KEKAVILQPDRVVIANGPAFGCVL-------------MKDFLKALSKR-----LKSNTTA 364
+ + L + D+L+
Sbjct: 293 RLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQPWCVEIPRL 352
Query: 365 YENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETG------DSWFNCQ 418
E + V + E + L I L + + D+
Sbjct: 353 AEQAMQ-AVIARRDAFGEAQ-------LAHRICDYLPEQGQLFVGNSLVVRLIDALS--- 401
Query: 419 KLKLPKGCGYEFQMQYGS-----IGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVS 473
+LP G Y + I + G Q K +A +GD S ++
Sbjct: 402 --QLPAG-----YPVYSNRGASGIDGLLSTAAG-VQRASGKPTLAIVGDLSALYDLNALA 453
Query: 474 TMLRCGQKTIIFLINNGGYTI----EVEIHDG------PYNVIKNWNYTGLVDAIHNGEG 523
+ + ++ ++NN G I + P NV ++ +
Sbjct: 454 LLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNV----HFEHAAAM-FELKY 508
Query: 524 KCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSA 576
+ +EL A +A + IE++V+ D ++ L + ++VS
Sbjct: 509 H----RPQNWQELETAFADAWRTPTTTV--IEMVVNDTDGAQTLQQLLAQVSH 555
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 94.5 bits (236), Expect = 1e-20
Identities = 98/513 (19%), Positives = 161/513 (31%), Gaps = 111/513 (21%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLL-DHLIAEPGLNLIGCCNELNAGYAADGYARSRG-V 107
L RL G VF V G ++L D + G++ + +E AG AAD AR G
Sbjct: 18 LLSRLRDHGVGKVFGVVGREAASILFDEV---EGIDFVLTRHEFTAGVAADVLARITGRP 74
Query: 108 GACVVT----FTVGGLSVLNA---IAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP 160
AC T T N IA + + P+I + H
Sbjct: 75 QACWATLGPGMT-------NLSTGIATSVLDRSPVIALAA---------QSESHDIFPND 118
Query: 161 DFSQELRCF---QTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISV---ACNLPA 213
Q L ++ Y + + +L+D+AV+ A+ E P +IS+
Sbjct: 119 TH-QCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSE 177
Query: 214 IPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFV 273
T P P G + A + AA L +A PVLV G + A A
Sbjct: 178 GIDTTVPNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIR 237
Query: 274 ELADACGYAVA--VMPSAKGLVPEHHPHFI-----------GTYWG--AVSTA--FFSVG 316
LA+ V + AKG++P H + +VG
Sbjct: 238 ALAERLNIPVITTYI--AKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVG 295
Query: 317 Y--------SLLLKKEKAVILQPD-------RVVIANGPAFGCVLMKDFLKALSKRLKSN 361
Y S+ K + ++ RV + V F++ S
Sbjct: 296 YDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDV--LAFVEHFETATASF 353
Query: 362 TTAYENYH---RIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNC- 417
+ R + E ++ +RV + +++ AE G+
Sbjct: 354 GAKQRHDIEPLRARIAEFLADPETYEDGMRV----HQVIDSMNTVMEEAAEPGEGTIVSD 409
Query: 418 --QKLKLPKGCGYEFQM---QY---------------GSIGWSVGATLGYAQSVPEKRVI 457
F+ + S G+ + A +G + P++
Sbjct: 410 IGF-----------FRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTF 458
Query: 458 ACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490
GDG F + D+ T+ R + ++NN
Sbjct: 459 LIAGDGGFHSNSSDLETIARLNLPIVTVVVNND 491
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 83.0 bits (206), Expect = 8e-17
Identities = 78/529 (14%), Positives = 140/529 (26%), Gaps = 147/529 (27%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLI-AEPGLNLIGCCNELNAGYAADGYARSRG-V 107
+ L + G V G + + D + G +I EL + +GY +
Sbjct: 10 IVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRS 69
Query: 108 GACVVTFTVGGLSVLNAIAGAYSENLPLICI---VGGPNSNDYGTNRILHHTIGLPDFSQ 164
A VG L + A+ A + +P + I G G +
Sbjct: 70 AAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDG-------------RLAGRSE--- 113
Query: 165 ELRCFQ-------T-VTCYQAVVNNLEDAHELIDTAVSTALKES---------KPVYISV 207
Q T + V L+ V A+ E+ P Y+ +
Sbjct: 114 ---AAQQVPWQSFTPIARSTQRVERLDK--------VGEAIHEAFRVAEGHPAGPAYVDI 162
Query: 208 ACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAK 267
+L A VP + S V AA L A PV++AG + +
Sbjct: 163 PFDLTA-DQIDDK-ALVPRGATRAKSVLHAPNEDVREAAAQLVAAKNPVILAGGGVARSG 220
Query: 268 ACNAFVELADACGYAVA--VMPSAKGLVPEHHPHFI------GTYW-------------- 305
A ++LA+ G V G+ PE H + G
Sbjct: 221 GSEALLKLAEMVGVPVVTTST--GAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVL 278
Query: 306 GA------VSTAFFSVGYSLLLKKEKAVILQPD-------RVVIANGPAFGCVLMKDFLK 352
G+ ++ + + + + D K F++
Sbjct: 279 GSRLSDWGIAQGYIT---------KMPKFVHVDTDPAVLGTFYFPLLSVVADA--KTFME 327
Query: 353 ALSKRLKSNTTAY-------ENYHRI------YVPEGQPPKCEPKEPLRVNVLFQHIQKM 399
L + L + EN+ + + + + P + ++K+
Sbjct: 328 QLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDGWVREQESGDGMPASMFRAMAEVRKV 387
Query: 400 LSSETAVIAETGDSWFNCQKLKLPKGCGYEFQM---QY---------------GSIGWSV 441
E ++ + G + G +G
Sbjct: 388 QRPEDIIVTDIG------NH-----------TLPMFGGAILQRPRRLVTSMAEGILGCGF 430
Query: 442 GATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490
LG + P RV GDG+ + + I + N
Sbjct: 431 PMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVEHKLPVITMVFTNE 479
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 77.9 bits (193), Expect = 2e-15
Identities = 61/275 (22%), Positives = 99/275 (36%), Gaps = 42/275 (15%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VG 108
L L ++ V G L + G +E +AGYAA G G
Sbjct: 16 LIDALKMNDIDTMYGVVGIPITNLARMWQDD-GQRFYSFRHEQHAGYAASIAGYIEGKPG 74
Query: 109 ACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP--DFSQEL 166
C+ G L+ + ++A A + P+I + G + L D+ +E
Sbjct: 75 VCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSER----------EIVDLQQGDY-EE- 122
Query: 167 RCFQT-----VTCYQAVVNNLEDAHELIDTAVSTALKESK-----PVYISVACNLPA-IP 215
Q +N+++D I AV TA VY+ +LPA +
Sbjct: 123 -MDQMNVARPHCKASFRINSIKDIPIGIARAVRTA----VSGRPGGVYV----DLPAKLF 173
Query: 216 HPTFSREPVPFSLSPKLS---NEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAF 272
T S E L + ++ E A+ AA+ + A +PV++ G A+ +
Sbjct: 174 GQTISVEEANKLLFKPIDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEI 233
Query: 273 VELADACGYAVAVMPSAKGLVPEHHP-HFIGTYWG 306
L + G M AKGL+P++HP
Sbjct: 234 RALVEETGIPFLPMGMAKGLLPDNHPQS--AAATR 266
Score = 59.8 bits (146), Expect = 1e-09
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 16/134 (11%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTI 494
G +G +G + A +V K VIA GD +F + ++ T+ R + ++NNGG I
Sbjct: 426 GVMGIGMGYCVA-AAAVTGKPVIAVEGDSAFGFSGMELETICRYNLPVTVIIMNNGG--I 482
Query: 495 ----EVEIHDGPYN--VIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKK 548
E + G + + Y +++A G+G EL A+E A
Sbjct: 483 YKGNEADPQPGVISCTRLTRGRYDMMMEA-FGGKGY----VANTPAELKAALEEAV--AS 535
Query: 549 DCLCFIEVLVHKDD 562
C I ++ D
Sbjct: 536 GKPCLINAMIDPDA 549
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 67.6 bits (166), Expect = 5e-12
Identities = 59/316 (18%), Positives = 98/316 (31%), Gaps = 101/316 (31%)
Query: 242 VEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVA--VMPSAKGLVPEHHPH 299
+E A E L +A +PV+VAG + A A + A+ V +M G +P+ H
Sbjct: 216 IEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLM--GWGCIPDDHEL 273
Query: 300 FI------GTYWGAVSTA-----FFSVG-------------YSLLLKKEKAVILQPD--- 332
+ +T F +G Y+ E I+ D
Sbjct: 274 MAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYT-----EGRKIVHIDIEP 328
Query: 333 ----RVVIANGPAFGCVLMKDFLKALSKRLKSNTTAY----------------ENYHRIY 372
RV+ + K L L + + A R
Sbjct: 329 TQIGRVLCPDLGIVSDA--KAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKT 386
Query: 373 VPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQM 432
+ P K P RV ++ + K + + G S Q+
Sbjct: 387 HFDNVPVK-----PQRV---YEEMNKAFGRDVCYVTTIGLS-----------------QI 421
Query: 433 ---QY---------------GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVST 474
Q G +GW++ A LG + P++ V+A GD FQ ++++
Sbjct: 422 AAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAV 481
Query: 475 MLRCGQKTIIFLINNG 490
+ I L+NN
Sbjct: 482 GAQFNIPYIHVLVNNA 497
Score = 48.0 bits (115), Expect = 7e-06
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG--V 107
L + G T F VPG + G+ I + A + A+GY R+ +
Sbjct: 33 AMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNI 92
Query: 108 GACVVTFTVGGLSVLNAIAGAYSENLPLICIVG 140
G C+ T G ++ A+ A ++++P++CI G
Sbjct: 93 GVCLGTSGPAGTDMITALYSASADSIPILCITG 125
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 51.5 bits (124), Expect = 6e-07
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%)
Query: 10 TCKPPCSDLASPPNGAVSTIQSSVPATPLVNPSESTL--GRHLARRLVQIGATDVFSVPG 67
P + S + + A P ++ S L G+ + + VF PG
Sbjct: 46 GSAPSFNVDPLEQPAEPSKLAKKLRAEPDMDTSFVGLTGGQIFNEMMSRQNVDTVFGYPG 105
Query: 68 DFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIA 126
L + D + N + +E AG+ A+GYAR+ G G +VT G +V+ +A
Sbjct: 106 GAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMA 165
Query: 127 GAYSENLPLICIVG 140
A+++ +P++ G
Sbjct: 166 DAFADGIPMVVFTG 179
Score = 47.3 bits (113), Expect = 1e-05
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490
G++G+ + A +G + PE VI GD SF +T ++S+ ++ G I ++NN
Sbjct: 513 GTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNE 568
Score = 39.6 bits (93), Expect = 0.003
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 237 GLEAAVEAAAEFLNKAVKPVL-VAGPKMRVAKACNAFVELADACGYAVA--VMPSAKGLV 293
+ ++ AA+ +N A KPVL V + A EL+D V + G
Sbjct: 274 FVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQ--GLGSF 331
Query: 294 PEHHPHFIG 302
+ P +
Sbjct: 332 DQEDPKSLD 340
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 2e-06
Identities = 73/407 (17%), Positives = 116/407 (28%), Gaps = 164/407 (40%)
Query: 12 KPPCSDLASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNL 71
P L S P +S PL +G ++Q+ V + F
Sbjct: 225 TPDKDYLLSIP---IS--------CPL-------IG------VIQLAHYVVTAKLLGFT- 259
Query: 72 TLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYS- 130
PG EL + + G +VT +V AIA S
Sbjct: 260 ---------PG--------ELRSYLKG-----ATGHSQGLVT------AV--AIAETDSW 289
Query: 131 ENLPLICIVGGPNSNDYGTNRILHHTIGL------PDFSQELRCFQ-------TVTCYQA 177
E+ + +L IG+ P+ S + V
Sbjct: 290 ESF---------FVSVRKAITVLFF-IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 178 VVNNLEDAH--ELIDTAVSTALKESKPVYIS--------VACNLPA-------------- 213
++NL + ++ ++ L K V IS V P
Sbjct: 340 SISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 214 --------IPH----PTFSRE--PV--PF-S--LSPKLSNEMGLEAAVEAAAEFLNKAVK 254
IP FS PV PF S L P ++++ + V+ F K ++
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP--ASDLINKDLVKNNVSFNAKDIQ 456
Query: 255 -PVL--VAGPKMRVAKACNAFVELADACGYAVAVMP----SAKGLVPEHHPHFI--GTYW 305
PV G +RV + + D + +P + H + G
Sbjct: 457 IPVYDTFDGSDLRVLSG-SISERIVD----CIIRLPVKWETT---TQFKATHILDFGP-- 506
Query: 306 GAVSTAFFSVGYSLLLKKEKA---VILQPDRVVIA----NGPA--FG 343
G S G +L + K V RV++A P +G
Sbjct: 507 GGAS------GLGVLTHRNKDGTGV-----RVIVAGTLDINPDDDYG 542
Score = 49.7 bits (118), Expect = 2e-06
Identities = 68/424 (16%), Positives = 120/424 (28%), Gaps = 157/424 (37%)
Query: 192 AVSTALKESKPVYI---SVACNLPAIPHPTFS-----REPVPFSLS-PKLSNEMGLE--- 239
A ST +P+ + S+ L +P +F +E F+ P+ + +
Sbjct: 3 AYST-----RPLTLSHGSLEHVLL-VPTASFFIASQLQEQ--FNKILPEPTEGFAADDEP 54
Query: 240 -AAVEAAAEFL---NKAVKPVLVAGPKMRVAKAC-NAFVELADACGY--------AVAVM 286
E +FL + V+P G +V C F Y A +
Sbjct: 55 TTPAELVGKFLGYVSSLVEP-SKVGQFDQVLNLCLTEFEN-----CYLEGNDIHALAAKL 108
Query: 287 PSAKGLVPEHHPHFIGTYWGAVSTA---FFSVGYSLLLKKEKAVILQPDRVVIANGPA-- 341
I Y A A F S L + + G A
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA------------VGEGNAQL 156
Query: 342 ---FG-------------------CVLMKDFLKALSKRLKSNTTAYENYHRIYV------ 373
FG VL+ D +K ++ L + +++
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 374 -----PEGQPPK------------------------CE-----PKEPLRVNV--LFQHIQ 397
P P K + P E LR + H Q
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE-LRSYLKGATGHSQ 275
Query: 398 KMLSSETAVIAETGDSW--F--NCQK-LKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVP 452
++++ IA DSW F + +K + + G Y + S+P
Sbjct: 276 GLVTA--VAIA-ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT------------SLP 320
Query: 453 EKRVIACIGDGSFQVTAQDVST-MLRC-G--QKTIIFLIN--N----GGYTIEVEIHDGP 502
+ + + + V + ML Q+ + +N N G +E+ + +G
Sbjct: 321 PSILEDSLENN------EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 503 YNVI 506
N++
Sbjct: 375 KNLV 378
Score = 33.9 bits (77), Expect = 0.17
Identities = 36/259 (13%), Positives = 69/259 (26%), Gaps = 102/259 (39%)
Query: 40 NPSESTL------GRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCC---- 89
NP T+ G+ + + +F D L + + E +
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAM----IFETIVDGKLKT-EKIFKEINEHSTSYTFRSE 1722
Query: 90 -NELN-----------AGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLIC 137
L+ AA +S+G+ TF G S+ G Y+ L
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF--AGHSL-----GEYA---ALAS 1772
Query: 138 IVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDT---AVS 194
+ V ++E E++ +
Sbjct: 1773 LAD--------------------------------------VMSIESLVEVVFYRGMTMQ 1794
Query: 195 TALKESKP---VYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMG--LEA--------- 240
A+ + Y +A N P +FS+E + + + ++ G +E
Sbjct: 1795 VAVPRDELGRSNYGMIAIN-PGRVAASFSQEALQYVVE-RVGKRTGWLVEIVNYNVENQQ 1852
Query: 241 --------AVEAAAEFLNK 251
A++ LN
Sbjct: 1853 YVAAGDLRALDTVTNVLNF 1871
Score = 32.7 bits (74), Expect = 0.49
Identities = 59/335 (17%), Positives = 97/335 (28%), Gaps = 148/335 (44%)
Query: 281 YAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFFSVGYSLLLKKEKAVILQPDRVVIANGP 340
Y + +A+ + HF TY G+S+L VI P + I G
Sbjct: 1636 YKTS--KAAQDVWNRADNHFKDTY-----------GFSIL----DIVINNPVNLTIHFGG 1678
Query: 341 AFGCVLMKDFLKALSKRLKSNTTA--YENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQK 398
G KR++ N +A +E +G+ K E +F+ I +
Sbjct: 1679 EKG------------KRIRENYSAMIFETI-----VDGKL-KTEK--------IFKEINE 1712
Query: 399 MLSSETAVIAETGDSWFNCQK--LKLPKGCGYEF-Q--MQYGSIGWSVGATLGYAQ---- 449
+S T F +K L +F Q + + A
Sbjct: 1713 HSTSYT----------FRSEKGLLSAT-----QFTQPAL----------TLMEKAAFEDL 1747
Query: 450 ----SVPEKRVIA-----------CIGDG-SFQVTAQDVSTMLRCGQKTIIFLINNGGYT 493
+P A + D S + + V R G T
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF--YR-------------GMT 1792
Query: 494 IEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEE---ELIEAIENATGPKKDC 550
++V + P + + NY G++ AI+ G F +E ++E + TG
Sbjct: 1793 MQVAV---PRDELGRSNY-GMI-AINPGR----VAASFSQEALQYVVERVGKRTG----- 1838
Query: 551 LCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 585
L+E N N Q
Sbjct: 1839 ---------------WLVE------IVNYNVENQQ 1852
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 49.0 bits (118), Expect = 3e-06
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VG 108
L L + G VF+ PG ++ + L + + +E +AA+GYARS G G
Sbjct: 18 LVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPG 77
Query: 109 ACVVTFTVGGLSVLNAIAGAYSENLPLICIVG 140
C+ T G ++++ +A A +++PL+ I G
Sbjct: 78 ICIATSGPGATNLVSGLADALLDSVPLVAITG 109
Score = 48.3 bits (116), Expect = 5e-06
Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 25/144 (17%)
Query: 435 GSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG--G- 491
G++G+ + A +G + + P+ V+ GDGSF + Q+++T+ + L+NN G
Sbjct: 426 GAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHLGM 485
Query: 492 ------------YTIEVEIHDGPYNVIKNWNYTGLVDAI-HNGEGKCWTTKVFCEEELIE 538
+ D N A +V + +L E
Sbjct: 486 VMQWEDRFYKANRA-HTFLGDPAQEDEIFPNMLLFAAACGIPAA------RVTKKADLRE 538
Query: 539 AIENATGPKKDCLCFIEVLVHKDD 562
AI+ ++V+ +
Sbjct: 539 AIQTML--DTPGPYLLDVICPHQE 560
Score = 37.9 bits (89), Expect = 0.009
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVA--VMPSAKGLVPEH 296
++ +E ++++ KPVL G + + + G VA +M G P
Sbjct: 201 DSHLEQIVRLISESKKPVLYVGGG--CLNSSDELGRFVELTGIPVASTLM--GLGSYPAD 256
Query: 297 HPHFIG 302
+
Sbjct: 257 DELSLH 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 1e-05
Identities = 65/487 (13%), Positives = 121/487 (24%), Gaps = 159/487 (32%)
Query: 143 NSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKP 202
+ Y IL F C +D ++ + +S +E
Sbjct: 12 GEHQYQYKDILSVF--EDAFVDNFDC--------------KDVQDMPKSILSK--EEIDH 53
Query: 203 VYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAAAE----FLNKAVKPVLV 258
+ +S S F E ++ VE FL +K
Sbjct: 54 IIMS--------KDAV-SGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 259 AGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFFSVGYS 318
P M ++E D V K V P+
Sbjct: 104 -QPSMMTRM----YIEQRDRLYNDNQVFA--KYNVSRLQPY------------------- 137
Query: 319 LLLKKEKAVILQPDRVVIANGPAFGC---VLMKDFLKALSKRLKSNTTAY---------- 365
L L++ + L+P + V+ +G G + D + + K + +
Sbjct: 138 LKLRQ-ALLELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 366 -------EN-YHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETA-----VIAETGD 412
+ ++I LR++ + ++++L S+ V+ +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 413 SW----FN--CQKL----------KLPKGCGYEFQMQYGSIGWSVGATLGY--------A 448
+ FN C+ L L + + S+ +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 449 QSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKN 508
Q +P + T ++ I I DG N
Sbjct: 316 QDLPRE---VL---------------------TTNPRRLS----IIAESIRDGL-ATWDN 346
Query: 509 WNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDT--SKE 566
W + D + +IE+ N P + F + V
Sbjct: 347 WKHVNC-DKL---------------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 567 LLE--WG 571
LL W
Sbjct: 391 LLSLIWF 397
Score = 44.8 bits (105), Expect = 9e-05
Identities = 76/486 (15%), Positives = 136/486 (27%), Gaps = 162/486 (33%)
Query: 131 ENLPLICIVGGPNSN---DYGTNRILHHTIGLPDFSQELRCFQTVTCYQA---VVNNLED 184
E L + PN D+ +N L + ELR Y+ V+ N+++
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLR----IHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 185 AHELID-------TAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMG 237
A + + ++T + V L A S + +L+P +
Sbjct: 256 A-KAWNAFNLSCKILLTTR-------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL- 306
Query: 238 LEAAVEAAAEFL-NKAVK--PVLVA--GPKMRVAKA---------CNAFVELADAC---- 279
L ++ + L + + P ++ +R A C+ + ++
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 280 -------GY-AVAVMP-SAKGLVPEHHPHFIGTYWGAVST------AFFSVGYSLLLKKE 324
+ ++V P SA +P + W V YSL+ K
Sbjct: 367 EPAEYRKMFDRLSVFPPSAH--IPTI---LLSLIWFDVIKSDVMVVVNKLHKYSLVEK-- 419
Query: 325 KAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPK 384
QP I + ++ LK HR V PK
Sbjct: 420 -----QPKESTI-------------SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 385 EPLRVNVL----FQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWS 440
+ L L + HI L + E + F+M + +
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKN-----IEHPERM-------------TLFRMVFLDFRF- 502
Query: 441 VGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD 500
+ + + + A GS T Q L Y + +D
Sbjct: 503 LEQKIRHDST-------AWNASGSILNTLQQ--------------LKFYKPYICD---ND 538
Query: 501 GPYNVIKNWNYTGLVDAIHNGEGKCWTTKVF---CEEELIEAIENATGPKKDCLCFIEV- 556
Y LV+AI + F EE LI + + +
Sbjct: 539 P--------KYERLVNAILD----------FLPKIEENLICS---------KYTDLLRIA 571
Query: 557 LVHKDD 562
L+ +D+
Sbjct: 572 LMAEDE 577
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 46.4 bits (111), Expect = 2e-05
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 435 GSIGWSVGATLGYAQSVPE--KRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNG 490
GS+G G LG + E +R I GDGS + + T++R I+ ++NN
Sbjct: 419 GSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVIIMNNQ 476
Score = 46.0 bits (110), Expect = 3e-05
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 50 LARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG-VG 108
+ R L++ G +F + G T+ + + +I +E AG+AA+GYAR+ +G
Sbjct: 10 VVRTLIKAGVEHLFGLHGAHIDTIFQACLDHD-VPIIDTRHEAAAGHAAEGYARAGAKLG 68
Query: 109 ACVVT----FTVGGLSVLNA---IAGAYSENLPLICIVG 140
+VT FT NA IA A+ + P++ + G
Sbjct: 69 VALVTAGGGFT-------NAVTPIANAWLDRTPVLFLTG 100
Score = 44.4 bits (106), Expect = 9e-05
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 4/82 (4%)
Query: 223 PVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYA 282
+ L A ++ A L KA +PV+V G + A A G
Sbjct: 175 VIIPDLVLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVP 234
Query: 283 VAV--MPSAKGLVPEHHPHFIG 302
V ++ G
Sbjct: 235 VFADYE--GLSMLSGLPDAMRG 254
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.031
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 11/31 (35%)
Query: 348 KDFLKALSKRLKSNTTAYENYHRIYVPEGQP 378
K LK L LK +Y + P
Sbjct: 19 KQALKKLQASLK-----------LYADDSAP 38
Score = 27.6 bits (60), Expect = 7.2
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 20/44 (45%)
Query: 231 KLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVE 274
KL + L A ++A P L A A +E
Sbjct: 24 KLQASLKLYAD-DSA---------PAL----------AIKATME 47
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 170
Score = 34.0 bits (77), Expect = 0.057
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 220 SREPVPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
++ F+ + E AA+ ++KA +P+L+ G + + V+++ A
Sbjct: 5 TKNTKLFTSY---GVNTSKAVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAA 61
Query: 280 GYAVAVMPSAKGLVPEHHP 298
+A S+ ++ +
Sbjct: 62 NIPIAATGSSLAVLADKDV 80
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase
subunits, oxidoreductas; HET: NAD NAP; 2.30A
{Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A*
1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Length = 203
Score = 31.7 bits (72), Expect = 0.47
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
+ E AA + A K ++V G M VA+A +A E+AD
Sbjct: 33 AGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVL 73
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold,
oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum}
SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C*
2oo5_C*
Length = 180
Score = 31.3 bits (71), Expect = 0.56
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
+ E AA + A K ++V G M VA+A +A E+AD
Sbjct: 10 AGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVL 50
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 28.8 bits (65), Expect = 1.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 345 VLMKDFLKALSKRLKSNTTAYENY 368
VL KDF KA +K + +E Y
Sbjct: 59 VLAKDFEKAYKTVIKKDEQEHEFY 82
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H)
complex, inverted binding of NADP(H), oxidoreductase;
HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Length = 184
Score = 30.2 bits (68), Expect = 1.4
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
E ++ A + + +A ++ G + AKA +L
Sbjct: 9 EINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKML 49
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus} PDB: 2hf6_A
Length = 153
Score = 29.9 bits (67), Expect = 1.4
Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 135 LICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELID 190
++G N+ +L+ + + +A++ N+E +D
Sbjct: 76 YFYVIGSSYENELMLMTVLNCLFDSLS-----QMLRKNVEKRALLENMEGLFLAVD 126
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic
transhydrogenase, inner membrane, membrane,
oxidoreductase, transmembrane; HET: NAD NAP; NMR
{Escherichia coli}
Length = 186
Score = 30.2 bits (68), Expect = 1.4
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
E E AE L + ++ G M VA+A E+ +
Sbjct: 17 EITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKL 57
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold
reverse binding of N oxidoreductase; HET: NAP; 2.00A
{Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Length = 207
Score = 30.1 bits (68), Expect = 1.5
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
E ++ A + + +A ++ G + AKA +L
Sbjct: 32 EINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKML 72
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 30.1 bits (68), Expect = 2.1
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 46 LGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLI 86
+G HL RL++ +V+ + D + + P + +
Sbjct: 12 IGNHLTERLLREDHYEVYGL--DIGSDAISRFLNHPHFHFV 50
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, structural genomics,
infectious diseases; 1.75A {Bacillus anthracis} PDB:
3osc_A*
Length = 234
Score = 29.0 bits (65), Expect = 3.5
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 36 TPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLT 72
T + + + + +A L++IGA F +
Sbjct: 15 TENLYFQSNAMKKEIASHLLEIGAVF-LQPNDPFTWS 50
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
structural genomics, PSI-2, protein genomics, MCSG,
glycolysis isomerase; 2.60A {Thermoplasma acidophilum}
PDB: 3idd_A
Length = 399
Score = 29.3 bits (65), Expect = 3.6
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 187 ELIDTAVSTALKESKPVYISVACNLP-AIPHPTFSREPVPFSLSPKLSNEMGLEAAVEAA 245
E ID A+ I V + S +PVP G+ E +
Sbjct: 318 EDIDRAMEPLKSIGDHAVICVTGDHSTPCSFKDHSGDPVPIVFYTDGVMNDGVHLFDELS 377
Query: 246 AE 247
+
Sbjct: 378 SA 379
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 29.1 bits (65), Expect = 4.0
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 47 GRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEP 81
G++L L +F V L+ + +
Sbjct: 13 GKNLKADLTSTTDHHIFEVHRQTKEEELESALLKA 47
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 29.2 bits (66), Expect = 4.6
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 348 KDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVL 392
KDF KA+S R YEN+ V + + L + ++
Sbjct: 355 KDFDKAISLRDTEFIELYENFLSTTVKDDGSELLPVSDRLNIGIV 399
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831,
PSI, protein structure initiative; 2.50A {Neisseria
meningitidis serogroup A} SCOP: c.141.1.1
Length = 371
Score = 28.7 bits (65), Expect = 5.7
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 242 VEAAAEFLNKAVKPVLVAGPKMRVAKAC------NAFVELADACG 280
V+A L+ K + V G + A E+AD G
Sbjct: 49 VDAIRHSLDLEEKCLQVTGSFGQKEVMRYFQKEQLALFEVADLVG 93
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK
SGX research center for structural genomics, NYSGXRC,
function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Length = 145
Score = 27.6 bits (61), Expect = 7.1
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 181 NLEDAHELIDTAVSTALKESKPVYISV 207
L A ++ A + + V SV
Sbjct: 13 TLAAAQQMAAAVEKKATEINVAVVFSV 39
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Length = 509
Score = 28.5 bits (63), Expect = 8.1
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 108 GACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLP------- 160
V T ++V +A + +C + G + G I +G P
Sbjct: 28 TEKVDTILERNVTVTHAKDILEKTHNGKLCRLSGIPPLELGDCSIAGWLLGNPECDRLLS 87
Query: 161 ----DFSQELRCFQTVTCYQAVVNNLEDAHELI 189
+ E CY N+ E+ LI
Sbjct: 88 VPEWSYIVEKENPVNGLCYPGSFNDYEELKHLI 120
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 28.3 bits (64), Expect = 8.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 97 AADGYARSRGVGACVV 112
A +GY RS GV A ++
Sbjct: 220 AGNGYCRSEGVVAVLL 235
>3cwc_A Putative glycerate kinase 2; structural genomics, center for
structural genomics of infec diseases, csgid, IDP122,
transferase; 2.23A {Salmonella typhimurium LT2}
Length = 383
Score = 28.3 bits (64), Expect = 8.9
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 242 VEAAAEFLNKAVKPVLVAGPKMRVAKAC--------NAFVELADACG 280
VEA E + V V GP A +AF+E+A A G
Sbjct: 52 VEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASG 98
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein,
oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB:
3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A*
3b0j_A* 3b0l_A* 3b0h_A*
Length = 591
Score = 28.1 bits (63), Expect = 9.0
Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 46/177 (25%)
Query: 144 SNDYGTNRILH---------HTIGLPDFSQELRCFQTV--TCYQAVVNNL---------- 182
YG + LPD + L+ V T Q+ ++N+
Sbjct: 158 IRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAG 217
Query: 183 EDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREP----VPFSLSPKLS----- 233
D E++DT +I+ + +P S P S L
Sbjct: 218 IDPEEIVDT---RPYTNLLSQFITGN----SRGNPAVSNLPRKWNPCVVGSHDLYEHPHI 270
Query: 234 NEMGLEAAVEAAAEFLNKAVKPVLVAG----PKMRVAKACNAFVELADACGYAVAVM 286
N++ A + N +LV G + A +A+V D A++
Sbjct: 271 NDLAYMPATKDGRFGFN-----LLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAIL 322
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase;
monomer: alpha/beta domain, helix bundle, trimer of
dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus
kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A*
3iqe_A* 3iqf_A* 3iqz_A*
Length = 283
Score = 28.1 bits (62), Expect = 9.0
Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 26/188 (13%)
Query: 183 EDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSP----------KL 232
+ E ++ +P +I PA P P+ +RE + S P K+
Sbjct: 46 PECVEAAVEMALDIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKV 105
Query: 233 SNEM---GL-------EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYA 282
+EM GL +A + A EFL+ V+ + M+V A F + +A
Sbjct: 106 KDEMEEQGLGYILVKPDAMLGARREFLD-PVEMAIYNADLMKVLAATGVFRVVQEAFDEL 164
Query: 283 VAVMPSAKGLVPEHHPHFIGTYWGAVSTAFFSVGYSLLLKKEKAVILQPDRVVIANGPAF 342
+ + + P + + F Y+ KA+ +A+
Sbjct: 165 IEKAKEDEISEND-LPKLVIDRNTLLEREEFENPYA----MVKAMAALEIAENVADVSVE 219
Query: 343 GCVLMKDF 350
GC + +D
Sbjct: 220 GCFVEQDK 227
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 28.1 bits (62), Expect = 9.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 418 QKLKLPKGCGYEFQMQYGSIGW 439
++ K P Y+F + IGW
Sbjct: 485 REAKTPITTWYQFSIGGKVIGW 506
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.414
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,098,375
Number of extensions: 565601
Number of successful extensions: 1801
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1723
Number of HSP's successfully gapped: 92
Length of query: 585
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 486
Effective length of database: 3,937,614
Effective search space: 1913680404
Effective search space used: 1913680404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)