RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 044559
(585 letters)
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 204
Score = 135 bits (340), Expect = 2e-37
Identities = 100/201 (49%), Positives = 129/201 (64%), Gaps = 5/201 (2%)
Query: 386 PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATL 445
PL + + ++ +L+ T VIAETGDSWFN Q++KLP G E++MQ+G IGWSV A
Sbjct: 2 PLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAF 61
Query: 446 GYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNV 505
GYA PE+R I +GDGSFQ+TAQ+V+ M+R IIFLINN GYTIEV IHDGPYN
Sbjct: 62 GYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNN 121
Query: 506 IKNWNYTGLVDAI----HNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKD 561
IKNW+Y GL++ G K EL EAI+ A D IE + ++
Sbjct: 122 IKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALA-NTDGPTLIECFIGRE 180
Query: 562 DTSKELLEWGSRVSAANSRPP 582
D ++EL++WG RV+AANSR P
Sbjct: 181 DCTEELVKWGKRVAAANSRKP 201
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 175
Score = 114 bits (287), Expect = 2e-30
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 24/175 (13%)
Query: 233 SNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGL 292
S+E L AAV+ +F+ K ++ G K+R A A A V+ DA G AVA M +AK
Sbjct: 3 SDEASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSF 62
Query: 293 VPEHHPHFIGTYW---------------------GAVSTAFFSVGYSLLLKKEKAVILQP 331
PE + +IGT W V + + G++ + +K V+ +P
Sbjct: 63 FPEENALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEP 122
Query: 332 DRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEP 386
VV+ NG F V +KD+L L++++ T + + + + E K P +P
Sbjct: 123 RSVVV-NGIRFPSVHLKDYLTRLAQKVSKKTGSLDFFKSLNAGE--LKKAAPADP 174
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 111 bits (279), Expect = 3e-29
Identities = 71/176 (40%), Positives = 104/176 (59%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
SE TLG++L RL Q+ VF +PGDFNL+LLD + G+ G NELNA YAADGY
Sbjct: 1 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGY 60
Query: 102 ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
AR +G+ + TF VG LS LN IAG+Y+E++ ++ +VG P+ + +LHHT+G D
Sbjct: 61 ARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGD 120
Query: 162 FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHP 217
F+ R ++ A++ ++ A ID + T +PVY+ + NL + P
Sbjct: 121 FTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVP 176
>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 112 bits (280), Expect = 4e-29
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 8/192 (4%)
Query: 386 PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATL 445
PL+ ++ + L VIAETG S F + P Q+ +GSIG++ GATL
Sbjct: 4 PLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATL 63
Query: 446 GYAQ----SVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH-- 499
G A P+KRVI IGDGS Q+T Q++STM+R G K +F++NN GYTIE IH
Sbjct: 64 GAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGP 123
Query: 500 DGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVH 559
YN I+ W++ L+ G T +V E + ++ + + IE+++
Sbjct: 124 KAQYNEIQGWDHLSLLPTF--GAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLP 181
Query: 560 KDDTSKELLEWG 571
D + L++
Sbjct: 182 VFDAPQNLVKQA 193
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 186
Score = 109 bits (273), Expect = 3e-28
Identities = 80/171 (46%), Positives = 115/171 (67%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T+G +LA RLVQIG F+V GD+NL LLD+L+ + + CCNELN G++A+GYAR+
Sbjct: 3 TVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARA 62
Query: 105 RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQ 164
+G A VVT++VG LS +AI GAY+ENLP+I I G PN+ND+ +LHH +G D+
Sbjct: 63 KGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 122
Query: 165 ELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIP 215
+L + +T + E+A ID + TAL+E KPVY+ +ACN+ ++P
Sbjct: 123 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMP 173
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 196
Score = 105 bits (261), Expect = 1e-26
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 3/198 (1%)
Query: 383 PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVG 442
P L ++ +Q + ++A+ G S F L+LP + Q +GSIG+++
Sbjct: 1 PDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLA 60
Query: 443 ATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGP 502
A G + P +RVI GDG+ Q+T Q++ +MLR Q II ++NN GYT+E IH
Sbjct: 61 AAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAE 120
Query: 503 YNVIKNWNYTGLVDAIHNGE-GKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKD 561
+ + +V E+L + +E + L IEV++ K
Sbjct: 121 QRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVA--HHERLSLIEVMLPKA 178
Query: 562 DTSKELLEWGSRVSAANS 579
D L + A N+
Sbjct: 179 DIPPLLGALTKALEACNN 196
>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 175
Score = 94.4 bits (234), Expect = 4e-23
Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 14/183 (7%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T G+ + + VF PG L + D + N + +E AG+ A+GYAR+
Sbjct: 5 TGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARA 64
Query: 105 RG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFS 163
G G +VT G +V+ +A A+++ +P++ G ++ GT+ +
Sbjct: 65 SGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADV------ 118
Query: 164 QELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISVACNLPAIPHPTFSRE 222
+ ++ T + +V ++E+ I+ A A PV + + ++ A R
Sbjct: 119 --VGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAI----LRN 172
Query: 223 PVP 225
P+P
Sbjct: 173 PIP 175
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 178
Score = 91.1 bits (225), Expect = 6e-22
Identities = 69/174 (39%), Positives = 102/174 (58%), Gaps = 1/174 (0%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGY 101
+ + +L RL GA +F VPGD+NL LDH+I P + +GC NELNA YAADGY
Sbjct: 1 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGY 60
Query: 102 ARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPD 161
AR +G A + TF VG LS +N IAG+Y+E++P++ IVG P + +LHHT+G +
Sbjct: 61 ARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGE 120
Query: 162 FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIP 215
F + +T QAV+ +E ID ++T L+E +P Y+ + ++
Sbjct: 121 FRHFYHMSEPITVAQAVLTEQNACYE-IDRVLTTMLRERRPGYLMLPADVAKKA 173
>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana), chloroplast
[TaxId: 3702]}
Length = 195
Score = 91.0 bits (225), Expect = 1e-21
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 13/176 (7%)
Query: 47 GRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG 106
L L + G VF+ PG ++ + L + + +E +AA+GYARS G
Sbjct: 15 ADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSG 74
Query: 107 -VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE 165
G C+ T G ++++ +A A +++PL+ I G GT+
Sbjct: 75 KPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQET--------PI 126
Query: 166 LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISVACNL---PAIPHP 217
+ +++T + +V ++ED +I+ A A PV + V ++ AIP+
Sbjct: 127 VEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPNW 182
>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 179
Score = 85.7 bits (211), Expect = 6e-20
Identities = 39/184 (21%), Positives = 62/184 (33%), Gaps = 27/184 (14%)
Query: 224 VPFSLSPKLSNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAV 283
P +S K ++ + ++ + A PV++A +L D +
Sbjct: 2 TPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPA 61
Query: 284 AVMPSAKGLVPEHHPHFIGTYW---------------------GAVSTAFFSVGYSLLLK 322
V P KG + E HP + G Y GA+ + F + +S K
Sbjct: 62 FVTPMGKGSISEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYK 121
Query: 323 KEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCE 382
+ V D + I N F V MK L+ L + A + Y + VP P
Sbjct: 122 TKNIVEFHSDHMKIRNA-TFPGVQMKFVLQKLLTNI---ADAAKGYKPVAVPARTPA--N 175
Query: 383 PKEP 386
P
Sbjct: 176 AAVP 179
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 161
Score = 82.1 bits (202), Expect = 6e-19
Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 22/153 (14%)
Query: 233 SNEMGLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGL 292
++ L+A +AA L + + L+A + +A + A A M KG+
Sbjct: 10 ADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGI 69
Query: 293 VPEHHPHFIGTYWGAVSTA-----------FFSVG----------YSLLLKKEKAVILQP 331
E F GTY G+ ST VG ++ L + + +QP
Sbjct: 70 FDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQP 129
Query: 332 DRVVIANGPAFGCVLMKDFLKALSKRLKSNTTA 364
+ F + M ++ L + K + A
Sbjct: 130 HAARV-GDVWFTGIPMNQAIETLVELCKQHVHA 161
>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 174
Score = 63.1 bits (152), Expect = 3e-12
Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 10/168 (5%)
Query: 42 SESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-PGLNLIGCCNELNAGYAADG 100
+ G + + L G ++ +PG +++D L AE ++ I +E AA
Sbjct: 1 TNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAA 60
Query: 101 YARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGL 159
A+ G +G C + GG ++N + A +++P++ ++G + +
Sbjct: 61 DAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEM---- 116
Query: 160 PDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISV 207
E + V Y N +ID A+ A + +
Sbjct: 117 ----NENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQI 160
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 184
Score = 61.1 bits (147), Expect = 2e-11
Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 10/165 (6%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAE-PGLNLIGCCNELNAGYAADGYAR 103
+G + + L GA ++ +P +L+D + E + + +E AA ++
Sbjct: 5 NIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSK 64
Query: 104 SR-GVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162
+G V + G ++N + A +N+P++ I+G +
Sbjct: 65 FGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQR--------ELNMDAFQE 116
Query: 163 SQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISV 207
+ + + Y V E +L+D A A+ + + V
Sbjct: 117 LNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLEV 161
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 228
Score = 61.1 bits (147), Expect = 3e-11
Identities = 36/204 (17%), Positives = 75/204 (36%), Gaps = 3/204 (1%)
Query: 382 EPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFN-CQKLKLPKGCGYEFQMQYGSIGWS 440
+ + PL+ + + + K+ + + GD N + LKL + + ++G
Sbjct: 1 KQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVG 60
Query: 441 VGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHD 500
+ + + PE++V GDG +T QD++T ++ I + N Y + +
Sbjct: 61 IPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGWIKDEQE 120
Query: 501 GPY-NVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVH 559
N + + + +V E+L + E A + I+ ++
Sbjct: 121 DTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVIT 180
Query: 560 KDD-TSKELLEWGSRVSAANSRPP 582
D E L S +S+A
Sbjct: 181 GDRPLPAEKLRLDSAMSSAADIEA 204
>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 181
Score = 58.8 bits (141), Expect = 9e-11
Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 14/188 (7%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
+ +L G VF +PG + D L + + +I +E NA + A R
Sbjct: 6 HGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSL-LDSSIRIIPVRHEANAAFMAAAVGRI 64
Query: 105 RG-VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFS 163
G G +VT G +++ +A A SE P++ + G D
Sbjct: 65 TGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSM-------- 116
Query: 164 QELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISVACNLPAIPHPTFSRE 222
+ F VT Y V + E++ A A + ++S+ ++ P S +
Sbjct: 117 DTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGP---VSGK 173
Query: 223 PVPFSLSP 230
+P S +P
Sbjct: 174 VLPASGAP 181
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 198
Score = 56.5 bits (135), Expect = 8e-10
Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 10/189 (5%)
Query: 382 EPKEPLRVNVLFQHIQKMLS-----SETAVIAETGDS-WFNCQKLKLPKGCGYEFQMQYG 435
++ +RV+ + + ++ E ++++ G + + + G+
Sbjct: 3 TYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCS 62
Query: 436 SIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLR-CGQKTIIFLINNGGYTI 494
S G+ + A +G + P++ GDG F + D+ T+ R + + N+ I
Sbjct: 63 SFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNGLI 122
Query: 495 EVEIHDGPYNVIKNWNYTGLVD-AIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCF 553
E+ + G + G VD T+ EEL+ A+ +
Sbjct: 123 ELYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGA--ELGRPFL 180
Query: 554 IEVLVHKDD 562
IEV V+ D
Sbjct: 181 IEVPVNYDF 189
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana), chloroplast
[TaxId: 3702]}
Length = 208
Score = 55.6 bits (133), Expect = 2e-09
Identities = 30/189 (15%), Positives = 68/189 (35%), Gaps = 14/189 (7%)
Query: 385 EPLRVNVLFQHIQKMLSSETAVIAETGDS--WFNCQKLKLPKGCGYEFQMQYGSIGWSVG 442
E + + + ++ + + G W Q K + G++G+ +
Sbjct: 1 EAIPPQYAIKVLDELTDGKAIISTGVGQHQMWA-AQFYNYKKPRQWLSSGGLGAMGFGLP 59
Query: 443 ATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGP 502
A +G + + P+ V+ GDGSF + Q+++T+ + L+NN + ++ D
Sbjct: 60 AAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRF 119
Query: 503 YNVIKNWNYTGLVD---------AIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCF 553
Y + + G + +V + +L EAI+
Sbjct: 120 YKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTML--DTPGPYL 177
Query: 554 IEVLVHKDD 562
++V+ +
Sbjct: 178 LDVICPHQE 186
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 177
Score = 54.6 bits (130), Expect = 3e-09
Identities = 22/69 (31%), Positives = 29/69 (42%)
Query: 237 GLEAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEH 296
G + A + AA L +A PVLV G + A A LA+ V AKG++P
Sbjct: 4 GWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVG 63
Query: 297 HPHFIGTYW 305
H G
Sbjct: 64 HELNYGAVT 72
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 186
Score = 51.2 bits (121), Expect = 5e-08
Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 21/192 (10%)
Query: 45 TLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARS 104
T L RL G VF V G ++L G++ + +E AG AAD AR
Sbjct: 2 TAAHALLSRLRDHGVGKVFGVVGREAASILFD--EVEGIDFVLTRHEFTAGVAADVLARI 59
Query: 105 RG--VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162
G + + + +
Sbjct: 60 TGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHD--------IFPNDTHQC 111
Query: 163 SQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISVACNL--------PA 213
+ ++ Y + + +L+D+AV+ A+ E P +IS+ +L
Sbjct: 112 LDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTT 171
Query: 214 IPHPTFSREPVP 225
+P+P + P
Sbjct: 172 VPNPPANTPAKP 183
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter
formigenes [TaxId: 847]}
Length = 175
Score = 47.7 bits (112), Expect = 6e-07
Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHP 298
E A+ AA+ + A +PV++ G A+ + L + G M AKGL+P++HP
Sbjct: 6 EDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHP 65
Query: 299 HFIGTYWG-------AVSTAFFSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVL----- 346
+ + + K K + + V + A
Sbjct: 66 QSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIA 125
Query: 347 ------MKDFLKALSKRLKSNTTAYENYH 369
+K + L K LK A +
Sbjct: 126 APVVGDIKSAVSLLRKALKGAPKADAEWT 154
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 179
Score = 46.1 bits (108), Expect = 2e-06
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 12/135 (8%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHP 298
+ A++ A+ + +A P+ + G + A L + V A G V + +
Sbjct: 7 DDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNF 66
Query: 299 HFIGTYWGAVSTAFFSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRL 358
G + Q +VI G + + + +
Sbjct: 67 SRFAGRVGLFNNQAGDRLL------------QLADLVICIGYSPVEYEPAMWNSGNATLV 114
Query: 359 KSNTTAYENYHRIYV 373
+
Sbjct: 115 HIDVLPAYEERNYTP 129
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter
formigenes [TaxId: 847]}
Length = 188
Score = 44.6 bits (104), Expect = 7e-06
Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 9/167 (5%)
Query: 47 GRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRG 106
L L ++ V G L + G +E +AGYAA G
Sbjct: 7 FHVLIDALKMNDIDTMYGVVGIPITNLARMW-QDDGQRFYSFRHEQHAGYAASIAGYIEG 65
Query: 107 -VGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQE 165
G C+ G L+ + ++A A + P+I + G + + + +
Sbjct: 66 KPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEM------DQ 119
Query: 166 LRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISVACNL 211
+ + +N+++D I AV TA+ VY+ + L
Sbjct: 120 MNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKL 166
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase
complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 158
Score = 43.8 bits (103), Expect = 9e-06
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
Query: 241 AVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVA------VMPSAKGLVP 294
+ A + KA +P+L+ GP + V+ V GL
Sbjct: 8 KGKPVANMIKKAKRPLLIVGPD--MTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGE 65
Query: 295 EHHPHFIG 302
+ + +
Sbjct: 66 KVNYAVLH 73
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 180
Score = 43.8 bits (102), Expect = 1e-05
Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 11/166 (6%)
Query: 44 STLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYAR 103
+++ L + G VF PG L L I E ADGYA+
Sbjct: 1 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDF--PEDFRYILALQEACVVGIADGYAQ 58
Query: 104 SRGVGACVVTFTV-GGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDF 162
+ A + + G + + A++ A++ + PLI G G +L +
Sbjct: 59 ASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNV------ 112
Query: 163 SQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESK-PVYISV 207
+ + + + + + A+ A + PVY+SV
Sbjct: 113 -DAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSV 157
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 42.5 bits (99), Expect = 2e-05
Identities = 19/77 (24%), Positives = 27/77 (35%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHP 298
+ ++ + LN A P +V GP + A A V LA+ V V PSA
Sbjct: 6 DQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRH 65
Query: 299 HFIGTYWGAVSTAFFSV 315
A A +
Sbjct: 66 PCFRGLMPAGIAAISQL 82
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana), chloroplast
[TaxId: 3702]}
Length = 179
Score = 37.6 bits (86), Expect = 0.001
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHP 298
++ +E ++++ KPVL G + + + G VA G P
Sbjct: 6 DSHLEQIVRLISESKKPVLYVG--GGCLNSSDELGRFVELTGIPVASTLMGLGSYPCDDE 63
Query: 299 HF 300
Sbjct: 64 LS 65
>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 171
Score = 35.8 bits (81), Expect = 0.006
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 245 AAEFLNKAVKPVLVAGP-KMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGT 303
AA+ +N A KPVL G + A EL+D V G + P +
Sbjct: 3 AADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDM 62
Query: 304 YW 305
Sbjct: 63 LG 64
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 177
Score = 34.6 bits (78), Expect = 0.014
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHP 298
++AA E LN + +PV+ AG + A ELA V
Sbjct: 8 AQDIDAAVELLNNSKRPVIYAG--IGTMGHGPAVQELARKIKAPVITTGKNFETFEWDFE 65
Query: 299 HFIGTYWGAVSTAFF 313
G+ +
Sbjct: 66 ALTGSTYRVGWKPAN 80
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 183
Score = 34.2 bits (77), Expect = 0.022
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHP 298
AV + L A +P++ G + KA +L+ + AKG+V + +P
Sbjct: 17 VQAVTRLTQTLLAAERPLIYYG--IGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYP 74
Query: 299 HFIGTYW 305
++G+
Sbjct: 75 AYLGSAN 81
>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 177
Score = 30.9 bits (70), Expect = 0.23
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
E ++ A + + +A ++ G + AKA +L
Sbjct: 5 EINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKML 45
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 30.7 bits (67), Expect = 0.55
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 46 LGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLI 86
+G HL RL++ +V+ + D + + P + +
Sbjct: 12 IGNHLTERLLREDHYEVYGL--DIGSDAISRFLNHPHFHFV 50
>d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII)
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 180
Score = 28.2 bits (63), Expect = 2.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 239 EAAVEAAAEFLNKAVKPVLVAGPKMRVAKACNAFVELADAC 279
+ E AA + A K ++V G M VA+A +A E+AD
Sbjct: 10 AGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVL 50
>d2b4wa1 b.67.2.5 (A:2-311) Hypothetical protein LmjF10.1260
{Leishmania major [TaxId: 5664]}
Length = 310
Score = 28.2 bits (63), Expect = 2.6
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 358 LKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLF 393
L + A I PP CEPK PL + +F
Sbjct: 230 LDPQSRAITGAKIIGTKSCYPP-CEPKVPLLADCVF 264
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c
{Streptococcus mutans [TaxId: 1309]}
Length = 253
Score = 27.7 bits (60), Expect = 3.2
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 469 AQDVSTMLRCGQKTIIFLINNGGYT----IEVEIHDGPYNVIKNWNYTGLVDAIH--NGE 522
+D L+ Q I + NN T E+ YT + I N
Sbjct: 23 GEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDM 82
Query: 523 GKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEW 570
+ T V E L +A+ A + V+ + + E L
Sbjct: 83 KRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNLTYEKLTL 130
>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio
cholerae [TaxId: 666]}
Length = 191
Score = 27.5 bits (60), Expect = 3.4
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 10/94 (10%)
Query: 430 FQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGS-FQVTAQDVSTMLRCGQKTIIFLIN 488
G+ + + V+ + + + G KTI
Sbjct: 88 LSCVSNDFGYDYVFSRYVEAVGAKGDVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGK 147
Query: 489 NGGYTIE---VEIHDGPYNVIKNWNYTGLVDAIH 519
+GG VEI + ++ Y + +H
Sbjct: 148 DGGKMAGLADVEIR------VPHFGYADRIQEVH 175
>d1eexb_ c.51.3.1 (B:) Diol dehydratase, beta subunit {Klebsiella
oxytoca [TaxId: 571]}
Length = 178
Score = 26.7 bits (59), Expect = 5.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 330 QPDRVVIANGPAFGCVLMK 348
Q D V+IA GPAFG
Sbjct: 14 QQDEVIIAVGPAFGLAQTV 32
>d1iwpb_ c.51.3.1 (B:) Diol dehydratase, beta subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 184
Score = 26.3 bits (58), Expect = 7.3
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 330 QPDRVVIANGPAFGCVLMK 348
+ D VVI GPAF
Sbjct: 16 RADEVVIGVGPAFDKHQHH 34
>d1sh8a_ d.38.1.5 (A:) Hypothetical protein PA5026 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 153
Score = 25.9 bits (56), Expect = 9.9
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 280 GYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFFSVGYSLLL 321
GY MP + H Y GA+ T G +L L
Sbjct: 33 GYVRLRMP-----GAGNENHIGSMYAGALFTLAELPGGALFL 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.414
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,190,381
Number of extensions: 103975
Number of successful extensions: 443
Number of sequences better than 10.0: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 45
Length of query: 585
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 495
Effective length of database: 1,171,896
Effective search space: 580088520
Effective search space used: 580088520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)