BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044560
MILVNVQVIDMLLFKGTEELNNILEHAKQRHHVIGQYVLGPQGLVQDLDPKDQGLSSFLK
NFYKSNYF

High Scoring Gene Products

Symbol, full name Information P value
AT3G12260 protein from Arabidopsis thaliana 6.5e-19

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044560
        (68 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2082209 - symbol:AT3G12260 "AT3G12260" species...   227  6.5e-19   1


>TAIR|locus:2082209 [details] [associations]
            symbol:AT3G12260 "AT3G12260" species:3702 "Arabidopsis
            thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0005747 "mitochondrial respiratory
            chain complex I" evidence=IDA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0009060 "aerobic respiration"
            evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
            [GO:0046686 "response to cadmium ion" evidence=RCA] [GO:0051788
            "response to misfolded protein" evidence=RCA] [GO:0080129
            "proteasome core complex assembly" evidence=RCA] EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0022900 TCDB:3.D.1.6.3
            GO:GO:0005747 EMBL:AP002047 EMBL:AC069472 EMBL:AY054576
            EMBL:AY064675 IPI:IPI00533858 RefSeq:NP_566416.1 UniGene:At.48649
            UniGene:At.74053 IntAct:Q9LHI0 STRING:Q9LHI0 PaxDb:Q9LHI0
            PRIDE:Q9LHI0 GeneID:820406 KEGG:ath:AT3G12260 GeneFarm:1865
            TAIR:At3g12260 eggNOG:NOG273612 HOGENOM:HOG000200993
            InParanoid:Q9LHI0 KO:K03950 OMA:IYNLDDV PhylomeDB:Q9LHI0
            ProtClustDB:CLSN2688295 Genevestigator:Q9LHI0 Uniprot:Q9LHI0
        Length = 133

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 42/66 (63%), Positives = 55/66 (83%)

Query:     3 LVNVQVIDMLLFKGTEELNNILEHAKQRHHVIGQYVLGPQGLVQDLDPKDQGLSSFLKNF 62
             + + +VID+L+FKG EEL +I++HAKQRHH+IGQYV+G +GLVQ+   KDQG + FLKNF
Sbjct:    69 ITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDFLKNF 127

Query:    63 YKSNYF 68
             Y SNYF
Sbjct:   128 YTSNYF 133


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.142   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        68   0.00091  102 3  11 22  0.44    28
                                                     29  0.38    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  442 (47 KB)
  Total size of DFA:  79 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.84u 0.10s 8.94t   Elapsed:  00:00:01
  Total cpu time:  8.84u 0.10s 8.94t   Elapsed:  00:00:01
  Start:  Mon May 20 16:41:59 2013   End:  Mon May 20 16:42:00 2013

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