BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044560
         (68 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F6O|A Chain A, Crystal Structure Of Arsr Family Transcriptional
          Regulator, Rha00566
 pdb|3F6O|B Chain B, Crystal Structure Of Arsr Family Transcriptional
          Regulator, Rha00566
          Length = 118

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 18 EELNNILEHAK--QRHHVIGQYVLGPQGLVQDLDPKDQGLSSFLKNFY 63
          E+LN I +      R  V+G+   GP  + +   P D  L SF+K+ +
Sbjct: 6  EQLNGIFQALADPTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIH 53


>pdb|3JU8|A Chain A, Crystal Structure Of Succinylglutamic Semialdehyde
          Dehydrogenase From Pseudomonas Aeruginosa.
 pdb|3JU8|B Chain B, Crystal Structure Of Succinylglutamic Semialdehyde
          Dehydrogenase From Pseudomonas Aeruginosa
          Length = 490

 Score = 25.4 bits (54), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 31 HHVIGQYVLGPQGLVQDLDPKDQGL 55
          H++ GQ++ G    ++ LDP  QG+
Sbjct: 8  HYIAGQWLAGQGETLESLDPVGQGV 32


>pdb|2JU5|A Chain A, Dsbh Oxidoreductase
          Length = 154

 Score = 25.4 bits (54), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 18 EELNNILEHAKQRHHVIGQYVLGPQGLVQDLDPKDQGL-SSFLKNF 62
          E     LEH+KQ H  IG +  G    +  +  +DQ L SS  K+F
Sbjct: 34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHF 79


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.142    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,122,970
Number of Sequences: 62578
Number of extensions: 71814
Number of successful extensions: 165
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 4
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)