BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044560
         (68 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LHI0|NDUA6_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
           OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1
          Length = 133

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 55/66 (83%), Gaps = 1/66 (1%)

Query: 3   LVNVQVIDMLLFKGTEELNNILEHAKQRHHVIGQYVLGPQGLVQDLDPKDQGLSSFLKNF 62
           + + +VID+L+FKG EEL +I++HAKQRHH+IGQYV+G +GLVQ+   KDQG + FLKNF
Sbjct: 69  ITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDFLKNF 127

Query: 63  YKSNYF 68
           Y SNYF
Sbjct: 128 YTSNYF 133


>sp|Q9KK91|CHIP_VIBFU Chitoporin OS=Vibrio furnissii GN=chiP PE=1 SV=1
          Length = 366

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 14  FKGTEELNNILEHAKQRHHVIGQYVLGPQGL----VQDLDPKDQGL 55
           FKG E  N I +H +    ++GQY  GP G+      +LD K  G+
Sbjct: 271 FKGEELDNGIRKHKQDSFSIVGQYWNGPLGIKIGYAANLDSKIDGV 316


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.142    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,644,947
Number of Sequences: 539616
Number of extensions: 887884
Number of successful extensions: 2179
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2176
Number of HSP's gapped (non-prelim): 2
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)