Query 044560
Match_columns 68
No_of_seqs 94 out of 96
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 27.7 10 0.00035 26.4 -0.5 58 11-68 42-104 (316)
2 1bm4_A Protein (moloney murine 24.4 22 0.00075 18.1 0.5 14 52-65 12-25 (32)
3 2o6n_A RH4B designed peptide; 23.5 82 0.0028 15.9 2.9 24 7-30 9-32 (35)
4 2wpv_B Ubiquitin-like protein 23.0 29 0.00098 19.8 0.9 10 55-64 9-18 (59)
5 2dpr_A CON-T(K7GLA); conantoxi 19.5 35 0.0012 16.3 0.7 11 16-26 1-11 (26)
6 3r6n_A Desmoplakin; spectrin r 19.1 85 0.0029 23.4 3.0 31 4-35 338-368 (450)
7 1p0z_A Sensor kinase CITA; tra 17.5 94 0.0032 18.2 2.5 42 2-43 19-60 (131)
8 1yii_A Annexin A5, annexin V, 15.5 1E+02 0.0036 21.4 2.6 28 4-31 104-132 (320)
9 4esb_A Transcriptional regulat 15.2 92 0.0032 18.4 2.0 27 14-40 78-104 (115)
10 3bj5_A Protein disulfide-isome 14.9 60 0.0021 19.9 1.1 12 55-66 118-129 (147)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=27.71 E-value=10 Score=26.35 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=24.1
Q ss_pred HHHHhhHHHHHHHHHHhhcccchhhhhhcCCCccccCC-----CCCCCCcchHHHHHhhcCCC
Q 044560 11 MLLFKGTEELNNILEHAKQRHHVIGQYVLGPQGLVQDL-----DPKDQGLSSFLKNFYKSNYF 68 (68)
Q Consensus 11 ~Lv~KG~~EL~e~~~~wKQ~~Hvm~~~~~~~~~~~~~~-----g~~~~~~sdFL~kFy~G~~~ 68 (68)
-+.-++.+||.|+-+.-.|.---|+.+...+..+..+. ....+....||-+||.+++|
T Consensus 42 ~~~~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkf 104 (316)
T 3hx3_A 42 HTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKF 104 (316)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCC
Confidence 45667788888876666666666666664321100000 00123466899999999865
No 2
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=24.44 E-value=22 Score=18.06 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=11.0
Q ss_pred CCCcchHHHHHhhc
Q 044560 52 DQGLSSFLKNFYKS 65 (68)
Q Consensus 52 ~~~~sdFL~kFy~G 65 (68)
...||.||+.++++
T Consensus 12 ~EsPs~FlerL~ea 25 (32)
T 1bm4_A 12 NESPSAFLERLKEA 25 (32)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHH
Confidence 34599999999875
No 3
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=23.55 E-value=82 Score=15.91 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.1
Q ss_pred hHHHHHHHhhHHHHHHHHHHhhcc
Q 044560 7 QVIDMLLFKGTEELNNILEHAKQR 30 (68)
Q Consensus 7 rVID~Lv~KG~~EL~e~~~~wKQ~ 30 (68)
+-|--|+-|+.+|+-|-+...||.
T Consensus 9 keiaylikkakeeileeikkakqe 32 (35)
T 2o6n_A 9 KEIAYLIKKAKEEILEEIKKAKQE 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999988878777774
No 4
>2wpv_B Ubiquitin-like protein MDY2; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_B
Probab=23.02 E-value=29 Score=19.82 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=8.6
Q ss_pred cchHHHHHhh
Q 044560 55 LSSFLKNFYK 64 (68)
Q Consensus 55 ~sdFL~kFy~ 64 (68)
..+|.+|||+
T Consensus 9 E~EFvsKFLt 18 (59)
T 2wpv_B 9 EHEFVSKFLT 18 (59)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5799999985
No 5
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=19.54 E-value=35 Score=16.31 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=7.3
Q ss_pred hHHHHHHHHHH
Q 044560 16 GTEELNNILEH 26 (68)
Q Consensus 16 G~~EL~e~~~~ 26 (68)
|.+|+||.++.
T Consensus 1 geeeyqemlen 11 (26)
T 2dpr_A 1 GEEEYQEMLEN 11 (26)
T ss_dssp CCHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 45778876654
No 6
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=19.07 E-value=85 Score=23.38 Aligned_cols=31 Identities=19% Similarity=0.037 Sum_probs=25.2
Q ss_pred cchhHHHHHHHhhHHHHHHHHHHhhcccchhh
Q 044560 4 VNVQVIDMLLFKGTEELNNILEHAKQRHHVIG 35 (68)
Q Consensus 4 tD~rVID~Lv~KG~~EL~e~~~~wKQ~~Hvm~ 35 (68)
.||.+||.. -+=..+|+.++..|.|+|.=|.
T Consensus 338 pd~eai~~a-~~l~~~~~~~~~lw~~~~~~~~ 368 (450)
T 3r6n_A 338 PNPLAVDLS-CKIEQYYEAILALWNQLYINMK 368 (450)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 489999985 4455899999999999997554
No 7
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=17.47 E-value=94 Score=18.16 Aligned_cols=42 Identities=7% Similarity=0.105 Sum_probs=30.1
Q ss_pred cccchhHHHHHHHhhHHHHHHHHHHhhcccchhhhhhcCCCc
Q 044560 2 ILVNVQVIDMLLFKGTEELNNILEHAKQRHHVIGQYVLGPQG 43 (68)
Q Consensus 2 ~VtD~rVID~Lv~KG~~EL~e~~~~wKQ~~Hvm~~~~~~~~~ 43 (68)
+..||.|++.|--....+|+..++..+....+-.-++....+
T Consensus 19 lA~~p~v~~~l~~~~~~~l~~~~~~~~~~~~~~~i~v~d~~G 60 (131)
T 1p0z_A 19 ISAMPELVEAVQKRDLARIKALIDPMRSFSDATYITVGDASG 60 (131)
T ss_dssp HHTCHHHHHHHHTTCHHHHHHHHHHHHHHSCCSEEEEEETTS
T ss_pred HHCCHHHHHHHHcCCHHHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 346899999987554478999999998887766444444333
No 8
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=15.49 E-value=1e+02 Score=21.43 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=24.1
Q ss_pred cchh-HHHHHHHhhHHHHHHHHHHhhccc
Q 044560 4 VNVQ-VIDMLLFKGTEELNNILEHAKQRH 31 (68)
Q Consensus 4 tD~r-VID~Lv~KG~~EL~e~~~~wKQ~~ 31 (68)
||.. +|++|..+...+++++.+.+++..
T Consensus 104 tde~~lieIL~~Rs~~ql~~I~~aY~~~y 132 (320)
T 1yii_A 104 TNEKVLTEILASRTPAEVQNIKQVYMQEY 132 (320)
T ss_dssp CCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CchHHHhHHHhcCCHHHHHHHHHHHHHhh
Confidence 5555 899999999999999999988764
No 9
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=15.19 E-value=92 Score=18.42 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.7
Q ss_pred HhhHHHHHHHHHHhhcccchhhhhhcC
Q 044560 14 FKGTEELNNILEHAKQRHHVIGQYVLG 40 (68)
Q Consensus 14 ~KG~~EL~e~~~~wKQ~~Hvm~~~~~~ 40 (68)
=+|+..|.+....|.+-.-.|..+..+
T Consensus 78 ~~G~~~l~~~~~~~~~~~~~i~~il~~ 104 (115)
T 4esb_A 78 DKGLEQLEEFKQSWGMVSTTVNNLLQG 104 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 379999999999999999889988854
No 10
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=14.86 E-value=60 Score=19.87 Aligned_cols=12 Identities=17% Similarity=0.564 Sum_probs=10.0
Q ss_pred cchHHHHHhhcC
Q 044560 55 LSSFLKNFYKSN 66 (68)
Q Consensus 55 ~sdFL~kFy~G~ 66 (68)
-+.|+++|++|+
T Consensus 118 i~~Fv~d~l~Gk 129 (147)
T 3bj5_A 118 ITEFCHRFLEGK 129 (147)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 568999999985
Done!