Query 044560
Match_columns 68
No_of_seqs 94 out of 96
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 07:22:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044560.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044560hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p0za_ d.110.6.1 (A:) Sensor 34.1 15 0.0011 20.6 2.7 42 2-43 19-60 (131)
2 d1vq0a2 g.81.1.1 (A:231-287) H 30.3 17 0.0013 18.4 2.3 21 6-26 6-26 (57)
3 d1vzya2 g.81.1.1 (A:234-290) H 30.0 19 0.0014 18.1 2.4 22 5-26 6-27 (57)
4 d1ulya_ a.4.5.58 (A:) Hypothet 26.7 9.4 0.00069 22.7 0.8 19 1-19 5-23 (190)
5 d1cy5a_ a.77.1.3 (A:) Apoptoti 23.9 29 0.0021 18.3 2.6 23 7-29 55-77 (93)
6 d1xjha_ g.81.1.1 (A:) HSP33, C 22.6 29 0.0021 17.6 2.3 22 5-26 11-32 (62)
7 d2ie7a1 a.65.1.1 (A:2-319) Ann 19.9 36 0.0026 22.2 2.8 27 4-30 102-129 (318)
8 d2dlqa4 g.37.1.1 (A:8-34) GLI- 17.8 6.5 0.00047 18.0 -1.0 9 55-63 7-15 (27)
9 d2g6ba1 c.37.1.8 (A:58-227) Ra 17.6 35 0.0025 19.0 2.0 18 50-67 14-31 (170)
10 d1x1ra1 c.37.1.8 (A:10-178) Ra 16.8 35 0.0025 19.2 1.9 18 50-67 12-29 (169)
No 1
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=34.13 E-value=15 Score=20.57 Aligned_cols=42 Identities=7% Similarity=0.105 Sum_probs=32.6
Q ss_pred cccchhHHHHHHHhhHHHHHHHHHHhhcccchhhhhhcCCCc
Q 044560 2 ILVNVQVIDMLLFKGTEELNNILEHAKQRHHVIGQYVLGPQG 43 (68)
Q Consensus 2 ~VtD~rVID~Lv~KG~~EL~e~~~~wKQ~~Hvm~~~~~~~~~ 43 (68)
+..||.|++.|--+-..+|++.++.++....+-.-|+.+..+
T Consensus 19 lA~~P~v~~al~~~d~~~l~~~~~~l~~~~~~~~i~v~D~~G 60 (131)
T d1p0za_ 19 ISAMPELVEAVQKRDLARIKALIDPMRSFSDATYITVGDASG 60 (131)
T ss_dssp HHTCHHHHHHHHTTCHHHHHHHHHHHHHHSCCSEEEEEETTS
T ss_pred HhCCHHHHHHHhcCCHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 357899999999888999999999998887754445545444
No 2
>d1vq0a2 g.81.1.1 (A:231-287) HSP33, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=30.34 E-value=17 Score=18.40 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.3
Q ss_pred hhHHHHHHHhhHHHHHHHHHH
Q 044560 6 VQVIDMLLFKGTEELNNILEH 26 (68)
Q Consensus 6 ~rVID~Lv~KG~~EL~e~~~~ 26 (68)
-|+.++|..=|..|++++++-
T Consensus 6 er~~~~L~~l~~~el~~m~~e 26 (57)
T d1vq0a2 6 EKAKNALLVLDKKELEDMRKE 26 (57)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHc
Confidence 479999999999999997763
No 3
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=30.03 E-value=19 Score=18.14 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=18.7
Q ss_pred chhHHHHHHHhhHHHHHHHHHH
Q 044560 5 NVQVIDMLLFKGTEELNNILEH 26 (68)
Q Consensus 5 D~rVID~Lv~KG~~EL~e~~~~ 26 (68)
.-|+.++|..=|.+|++++++-
T Consensus 6 ~er~~~~L~~l~~~el~~~~~e 27 (57)
T d1vzya2 6 KERFETAILGLGKKEIQDMIEE 27 (57)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHc
Confidence 3579999999999999997764
No 4
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.66 E-value=9.4 Score=22.68 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=12.1
Q ss_pred CcccchhHHHHHHHhhHHH
Q 044560 1 MILVNVQVIDMLLFKGTEE 19 (68)
Q Consensus 1 ~~VtD~rVID~Lv~KG~~E 19 (68)
++|+||++++.|==.-+.+
T Consensus 5 ~~~~d~~~~~~l~~p~R~~ 23 (190)
T d1ulya_ 5 KVITDPEVIKVMLEDTRRK 23 (190)
T ss_dssp EEECCHHHHHHHHSHHHHH
T ss_pred eecCHHHHHHHhCCHHHHH
Confidence 3678888877765444443
No 5
>d1cy5a_ a.77.1.3 (A:) Apoptotic protease activating factor 1, APAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.86 E-value=29 Score=18.27 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=15.4
Q ss_pred hHHHHHHHhhHHHHHHHHHHhhc
Q 044560 7 QVIDMLLFKGTEELNNILEHAKQ 29 (68)
Q Consensus 7 rVID~Lv~KG~~EL~e~~~~wKQ 29 (68)
+.+|+|.-||...+......-+.
T Consensus 55 ~LL~~L~~kg~~af~~F~~aL~~ 77 (93)
T d1cy5a_ 55 MLIKMILKKDNDSYVSFYNALLH 77 (93)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhHHHHHHHHHHh
Confidence 56777777777777666655544
No 6
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.58 E-value=29 Score=17.64 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.7
Q ss_pred chhHHHHHHHhhHHHHHHHHHH
Q 044560 5 NVQVIDMLLFKGTEELNNILEH 26 (68)
Q Consensus 5 D~rVID~Lv~KG~~EL~e~~~~ 26 (68)
--|+.++|..=|..|++++++-
T Consensus 11 ~er~~~~L~~l~~~El~~~~~e 32 (62)
T d1xjha_ 11 RERCADALKTLPDEEVDSILAE 32 (62)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHhc
Confidence 3579999999999999997764
No 7
>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.90 E-value=36 Score=22.22 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=23.3
Q ss_pred cchh-HHHHHHHhhHHHHHHHHHHhhcc
Q 044560 4 VNVQ-VIDMLLFKGTEELNNILEHAKQR 30 (68)
Q Consensus 4 tD~r-VID~Lv~KG~~EL~e~~~~wKQ~ 30 (68)
||.+ +||+|+.+...|+.++-..|++.
T Consensus 102 tde~~Lieil~trs~~e~~~ik~aY~~~ 129 (318)
T d2ie7a1 102 TDEKVLTEIIASRTPEELRAIKQAYEEE 129 (318)
T ss_dssp CCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 4554 89999999999999999999876
No 8
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.78 E-value=6.5 Score=18.02 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=6.9
Q ss_pred cchHHHHHh
Q 044560 55 LSSFLKNFY 63 (68)
Q Consensus 55 ~sdFL~kFy 63 (68)
-+.||+|+|
T Consensus 7 ~k~f~skyy 15 (27)
T d2dlqa4 7 HKKFLSKYY 15 (27)
T ss_dssp CCCCSSHHH
T ss_pred HHHHHHhHh
Confidence 357999987
No 9
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.56 E-value=35 Score=18.99 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=14.3
Q ss_pred CCCCCcchHHHHHhhcCC
Q 044560 50 PKDQGLSSFLKNFYKSNY 67 (68)
Q Consensus 50 ~~~~~~sdFL~kFy~G~~ 67 (68)
...-++|.|+.+|..|++
T Consensus 14 ~~~vGKTsli~~~~~~~~ 31 (170)
T d2g6ba1 14 DSGVGKTCLLVRFKDGAF 31 (170)
T ss_dssp STTSSHHHHHHHHHHSCC
T ss_pred CCCcCHHHHHHHHHhCCC
Confidence 445679999999998864
No 10
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.75 E-value=35 Score=19.16 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=13.9
Q ss_pred CCCCCcchHHHHHhhcCC
Q 044560 50 PKDQGLSSFLKNFYKSNY 67 (68)
Q Consensus 50 ~~~~~~sdFL~kFy~G~~ 67 (68)
...-++|.||.+|..+.+
T Consensus 12 ~~~vGKTsll~~~~~~~~ 29 (169)
T d1x1ra1 12 DGGVGKSALTIQFFQKIF 29 (169)
T ss_dssp CTTSSHHHHHHHHHHSSC
T ss_pred CCCcCHHHHHHHHHhCCC
Confidence 445679999999998753
Done!